AMK58_21235 48b4d1c507c1c51576b32198715fd7f4 972 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 80 97 - T 11-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 AMK58_21235 48b4d1c507c1c51576b32198715fd7f4 972 Gene3D G3DSA:2.20.25.90 77 128 2.8E-9 T 11-10-2018 AMK58_21235 48b4d1c507c1c51576b32198715fd7f4 972 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 78 126 5.5E-10 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_21235 48b4d1c507c1c51576b32198715fd7f4 972 SMART SM00926 75 129 2.9E-10 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_21235 48b4d1c507c1c51576b32198715fd7f4 972 Pfam PF00384 Molybdopterin oxidoreductase 132 572 3.8E-56 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_21235 48b4d1c507c1c51576b32198715fd7f4 972 SUPERFAMILY SSF53706 74 625 4.84E-189 T 11-10-2018 AMK58_21235 48b4d1c507c1c51576b32198715fd7f4 972 Gene3D G3DSA:3.40.228.10 209 408 9.0E-132 T 11-10-2018 AMK58_21235 48b4d1c507c1c51576b32198715fd7f4 972 SUPERFAMILY SSF50692 769 972 1.02E-37 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily AMK58_21235 48b4d1c507c1c51576b32198715fd7f4 972 Pfam PF01568 Molydopterin dinucleotide binding domain 837 965 2.1E-20 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 AMK58_21235 48b4d1c507c1c51576b32198715fd7f4 972 Gene3D G3DSA:3.40.50.740 141 625 9.0E-132 T 11-10-2018 AMK58_21235 48b4d1c507c1c51576b32198715fd7f4 972 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 34 66 9.3E-5 T 11-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal AMK58_21235 48b4d1c507c1c51576b32198715fd7f4 972 Gene3D G3DSA:2.40.40.20 783 972 2.3E-40 T 11-10-2018 AMK58_15880 4f9b9a3bea946f0d8158792e57fa7cbb 772 SMART SM00091 263 329 2.7E-9 T 11-10-2018 IPR000014 PAS domain AMK58_15880 4f9b9a3bea946f0d8158792e57fa7cbb 772 SUPERFAMILY SSF47384 401 478 1.33E-12 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_15880 4f9b9a3bea946f0d8158792e57fa7cbb 772 SMART SM00086 339 379 4.0E-4 T 11-10-2018 IPR001610 PAC motif AMK58_15880 4f9b9a3bea946f0d8158792e57fa7cbb 772 SMART SM00388 413 478 4.7E-12 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_15880 4f9b9a3bea946f0d8158792e57fa7cbb 772 Pfam PF03707 Bacterial signalling protein N terminal repeat 50 108 1.1E-15 T 11-10-2018 IPR005330 MHYT domain AMK58_15880 4f9b9a3bea946f0d8158792e57fa7cbb 772 Pfam PF03707 Bacterial signalling protein N terminal repeat 113 171 1.7E-19 T 11-10-2018 IPR005330 MHYT domain AMK58_15880 4f9b9a3bea946f0d8158792e57fa7cbb 772 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 524 630 7.5E-21 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_15880 4f9b9a3bea946f0d8158792e57fa7cbb 772 PRINTS PR00344 Bacterial sensor protein C-terminal signature 558 572 3.7E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_15880 4f9b9a3bea946f0d8158792e57fa7cbb 772 PRINTS PR00344 Bacterial sensor protein C-terminal signature 593 611 3.7E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_15880 4f9b9a3bea946f0d8158792e57fa7cbb 772 PRINTS PR00344 Bacterial sensor protein C-terminal signature 617 630 3.7E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_15880 4f9b9a3bea946f0d8158792e57fa7cbb 772 Gene3D G3DSA:3.30.450.20 260 379 3.9E-39 T 11-10-2018 AMK58_15880 4f9b9a3bea946f0d8158792e57fa7cbb 772 SUPERFAMILY SSF55874 467 631 5.24E-38 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_15880 4f9b9a3bea946f0d8158792e57fa7cbb 772 Gene3D G3DSA:1.10.287.130 380 476 1.4E-14 T 11-10-2018 AMK58_15880 4f9b9a3bea946f0d8158792e57fa7cbb 772 Gene3D G3DSA:3.40.50.2300 654 772 9.2E-19 T 11-10-2018 AMK58_15880 4f9b9a3bea946f0d8158792e57fa7cbb 772 Gene3D G3DSA:3.30.565.10 483 631 5.6E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_15880 4f9b9a3bea946f0d8158792e57fa7cbb 772 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 261 386 3.9E-36 T 11-10-2018 IPR000014 PAS domain AMK58_15880 4f9b9a3bea946f0d8158792e57fa7cbb 772 SMART SM00448 654 768 2.0E-16 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_15880 4f9b9a3bea946f0d8158792e57fa7cbb 772 Pfam PF00512 His Kinase A (phospho-acceptor) domain 413 478 2.4E-10 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_15880 4f9b9a3bea946f0d8158792e57fa7cbb 772 SMART SM00387 522 633 7.1E-27 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_15880 4f9b9a3bea946f0d8158792e57fa7cbb 772 SUPERFAMILY SSF55785 274 388 1.39E-30 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_15880 4f9b9a3bea946f0d8158792e57fa7cbb 772 Pfam PF00989 PAS fold 264 376 3.3E-16 T 11-10-2018 IPR013767 PAS fold GO:0006355 AMK58_15880 4f9b9a3bea946f0d8158792e57fa7cbb 772 SUPERFAMILY SSF52172 656 771 2.56E-20 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_15880 4f9b9a3bea946f0d8158792e57fa7cbb 772 Pfam PF00072 Response regulator receiver domain 656 768 1.1E-11 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_28720 f4dd7a17d61d01a9ae38de9053b3cfbf 208 SUPERFAMILY SSF143555 34 193 6.02E-6 T 11-10-2018 AMK58_28720 f4dd7a17d61d01a9ae38de9053b3cfbf 208 Pfam PF02663 FmdE, Molybdenum formylmethanofuran dehydrogenase operon 43 189 5.1E-6 T 11-10-2018 IPR003814 Formylmethanofuran dehydrogenase, subunit E domain AMK58_27845 f4dd7a17d61d01a9ae38de9053b3cfbf 208 SUPERFAMILY SSF143555 34 193 6.02E-6 T 11-10-2018 AMK58_27845 f4dd7a17d61d01a9ae38de9053b3cfbf 208 Pfam PF02663 FmdE, Molybdenum formylmethanofuran dehydrogenase operon 43 189 5.1E-6 T 11-10-2018 IPR003814 Formylmethanofuran dehydrogenase, subunit E domain AMK58_18355 3b829d049dba2ebf1558320486496163 375 Gene3D G3DSA:2.102.10.10 38 164 7.0E-29 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMK58_18355 3b829d049dba2ebf1558320486496163 375 Pfam PF00355 Rieske [2Fe-2S] domain 41 122 1.3E-13 T 11-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMK58_18355 3b829d049dba2ebf1558320486496163 375 SUPERFAMILY SSF55961 156 374 1.33E-26 T 11-10-2018 AMK58_18355 3b829d049dba2ebf1558320486496163 375 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 185 373 3.0E-24 T 11-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 AMK58_18355 3b829d049dba2ebf1558320486496163 375 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 25 50 1.6E-7 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 AMK58_18355 3b829d049dba2ebf1558320486496163 375 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 95 115 1.6E-7 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 AMK58_18355 3b829d049dba2ebf1558320486496163 375 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 55 70 1.6E-7 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 AMK58_18355 3b829d049dba2ebf1558320486496163 375 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 139 165 1.6E-7 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 AMK58_18355 3b829d049dba2ebf1558320486496163 375 SUPERFAMILY SSF50022 12 153 1.44E-33 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMK58_18355 3b829d049dba2ebf1558320486496163 375 Gene3D G3DSA:3.90.380.10 216 375 1.5E-11 T 11-10-2018 AMK58_07765 5f7cf0fba49c58ef6978a696cf87a019 314 Pfam PF05036 Sporulation related domain 241 302 6.6E-12 T 11-10-2018 IPR007730 Sporulation-like domain GO:0042834 AMK58_07765 5f7cf0fba49c58ef6978a696cf87a019 314 Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. 20 155 24.803 T 11-10-2018 IPR034718 Endolytic peptidoglycan transglycosylase RlpA GO:0016829 AMK58_07765 5f7cf0fba49c58ef6978a696cf87a019 314 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 65 162 7.9E-43 T 11-10-2018 IPR012997 Rare lipoprotein A AMK58_07765 5f7cf0fba49c58ef6978a696cf87a019 314 SUPERFAMILY SSF110997 239 312 1.02E-14 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 AMK58_07765 5f7cf0fba49c58ef6978a696cf87a019 314 Gene3D G3DSA:2.40.40.10 62 156 3.8E-37 T 11-10-2018 IPR036908 RlpA-like domain superfamily AMK58_07765 5f7cf0fba49c58ef6978a696cf87a019 314 Pfam PF03330 Lytic transglycolase 63 152 8.8E-24 T 11-10-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain AMK58_07765 5f7cf0fba49c58ef6978a696cf87a019 314 Gene3D G3DSA:3.30.70.1070 235 313 3.5E-9 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 AMK58_07765 5f7cf0fba49c58ef6978a696cf87a019 314 SUPERFAMILY SSF50685 57 152 2.89E-10 T 11-10-2018 IPR036908 RlpA-like domain superfamily AMK58_03700 ac762b9ca74d4e986de403a4966dd5ff 288 SUPERFAMILY SSF53187 14 277 3.14E-82 T 11-10-2018 AMK58_03700 ac762b9ca74d4e986de403a4966dd5ff 288 Pfam PF05013 N-formylglutamate amidohydrolase 20 249 2.3E-66 T 11-10-2018 IPR007709 N-formylglutamate amidohydrolase AMK58_03700 ac762b9ca74d4e986de403a4966dd5ff 288 Gene3D G3DSA:3.40.630.40 5 282 2.4E-102 T 11-10-2018 AMK58_29280 8a1fc6a7ec60eb3e36c81191955b5a40 402 Gene3D G3DSA:3.40.50.2000 200 364 3.0E-53 T 11-10-2018 AMK58_29280 8a1fc6a7ec60eb3e36c81191955b5a40 402 Gene3D G3DSA:3.40.50.2000 104 381 3.0E-53 T 11-10-2018 AMK58_29280 8a1fc6a7ec60eb3e36c81191955b5a40 402 Pfam PF13439 Glycosyltransferase Family 4 62 204 4.9E-9 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AMK58_29280 8a1fc6a7ec60eb3e36c81191955b5a40 402 Pfam PF00534 Glycosyl transferases group 1 215 362 3.8E-28 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 AMK58_29280 8a1fc6a7ec60eb3e36c81191955b5a40 402 SUPERFAMILY SSF53756 56 387 9.11E-62 T 11-10-2018 AMK58_28745 8a1fc6a7ec60eb3e36c81191955b5a40 402 Gene3D G3DSA:3.40.50.2000 200 364 3.0E-53 T 11-10-2018 AMK58_28745 8a1fc6a7ec60eb3e36c81191955b5a40 402 Gene3D G3DSA:3.40.50.2000 104 381 3.0E-53 T 11-10-2018 AMK58_28745 8a1fc6a7ec60eb3e36c81191955b5a40 402 Pfam PF13439 Glycosyltransferase Family 4 62 204 4.9E-9 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AMK58_28745 8a1fc6a7ec60eb3e36c81191955b5a40 402 Pfam PF00534 Glycosyl transferases group 1 215 362 3.8E-28 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 AMK58_28745 8a1fc6a7ec60eb3e36c81191955b5a40 402 SUPERFAMILY SSF53756 56 387 9.11E-62 T 11-10-2018 AMK58_25715 5ad827bb62a6bc2ea955c7c18edf9bc1 302 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 146 284 3.1E-12 T 11-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain AMK58_25715 5ad827bb62a6bc2ea955c7c18edf9bc1 302 SUPERFAMILY SSF52210 121 288 5.89E-43 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMK58_25715 5ad827bb62a6bc2ea955c7c18edf9bc1 302 Pfam PF02629 CoA binding domain 5 97 3.4E-24 T 11-10-2018 IPR003781 CoA-binding GO:0048037 AMK58_25715 5ad827bb62a6bc2ea955c7c18edf9bc1 302 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 288 33.424 T 11-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMK58_25715 5ad827bb62a6bc2ea955c7c18edf9bc1 302 PIRSF PIRSF001553 1 291 2.8E-101 T 11-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMK58_25715 5ad827bb62a6bc2ea955c7c18edf9bc1 302 PRINTS PR01798 Succinyl-CoA synthase signature 80 97 2.3E-28 T 11-10-2018 AMK58_25715 5ad827bb62a6bc2ea955c7c18edf9bc1 302 PRINTS PR01798 Succinyl-CoA synthase signature 178 196 2.3E-28 T 11-10-2018 AMK58_25715 5ad827bb62a6bc2ea955c7c18edf9bc1 302 PRINTS PR01798 Succinyl-CoA synthase signature 209 222 2.3E-28 T 11-10-2018 AMK58_25715 5ad827bb62a6bc2ea955c7c18edf9bc1 302 PRINTS PR01798 Succinyl-CoA synthase signature 240 257 2.3E-28 T 11-10-2018 AMK58_25715 5ad827bb62a6bc2ea955c7c18edf9bc1 302 Gene3D G3DSA:3.40.50.261 122 289 2.1E-53 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMK58_25715 5ad827bb62a6bc2ea955c7c18edf9bc1 302 SUPERFAMILY SSF51735 3 120 2.28E-37 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_25715 5ad827bb62a6bc2ea955c7c18edf9bc1 302 Gene3D G3DSA:3.40.50.720 1 121 2.1E-45 T 11-10-2018 AMK58_25715 5ad827bb62a6bc2ea955c7c18edf9bc1 302 SMART SM00881 2 98 4.2E-26 T 11-10-2018 IPR003781 CoA-binding GO:0048037 AMK58_00100 2c96be894e63c373727de3e657d8cd13 524 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 4 503 1.3E-126 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMK58_00100 2c96be894e63c373727de3e657d8cd13 524 PIRSF PIRSF002869 1 514 2.8E-145 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMK58_00100 2c96be894e63c373727de3e657d8cd13 524 Pfam PF03023 MviN-like protein 29 469 2.9E-114 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMK58_00100 2c96be894e63c373727de3e657d8cd13 524 PRINTS PR01806 Virulence factor MviN signature 157 178 3.4E-70 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMK58_00100 2c96be894e63c373727de3e657d8cd13 524 PRINTS PR01806 Virulence factor MviN signature 409 426 3.4E-70 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMK58_00100 2c96be894e63c373727de3e657d8cd13 524 PRINTS PR01806 Virulence factor MviN signature 357 376 3.4E-70 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMK58_00100 2c96be894e63c373727de3e657d8cd13 524 PRINTS PR01806 Virulence factor MviN signature 33 52 3.4E-70 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMK58_00100 2c96be894e63c373727de3e657d8cd13 524 PRINTS PR01806 Virulence factor MviN signature 259 285 3.4E-70 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMK58_00100 2c96be894e63c373727de3e657d8cd13 524 PRINTS PR01806 Virulence factor MviN signature 52 68 3.4E-70 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMK58_00100 2c96be894e63c373727de3e657d8cd13 524 PRINTS PR01806 Virulence factor MviN signature 133 157 3.4E-70 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMK58_00100 2c96be894e63c373727de3e657d8cd13 524 Hamap MF_02078 Probable lipid II flippase MurJ [murJ]. 3 467 19.285 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMK58_04500 9e793f15ee605fb6f805cc8a9f62ac1e 726 Gene3D G3DSA:3.30.450.20 73 237 1.2E-55 T 11-10-2018 AMK58_04500 9e793f15ee605fb6f805cc8a9f62ac1e 726 Gene3D G3DSA:1.10.287.950 435 720 1.4E-50 T 11-10-2018 AMK58_04500 9e793f15ee605fb6f805cc8a9f62ac1e 726 Gene3D G3DSA:3.30.450.20 63 340 1.2E-55 T 11-10-2018 AMK58_04500 9e793f15ee605fb6f805cc8a9f62ac1e 726 SMART SM00304 380 432 1.1E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_04500 9e793f15ee605fb6f805cc8a9f62ac1e 726 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 528 689 9.6E-29 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_04500 9e793f15ee605fb6f805cc8a9f62ac1e 726 Gene3D G3DSA:1.20.1480.50 352 434 1.0E-12 T 11-10-2018 AMK58_04500 9e793f15ee605fb6f805cc8a9f62ac1e 726 Pfam PF02743 Cache domain 48 331 2.5E-22 T 11-10-2018 IPR033479 Double Cache domain 1 AMK58_04500 9e793f15ee605fb6f805cc8a9f62ac1e 726 SUPERFAMILY SSF58104 400 719 3.53E-61 T 11-10-2018 AMK58_04500 9e793f15ee605fb6f805cc8a9f62ac1e 726 Pfam PF00672 HAMP domain 381 429 3.3E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_04500 9e793f15ee605fb6f805cc8a9f62ac1e 726 SMART SM00283 473 720 4.5E-45 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_04135 62a01f30e0f874367d6d09c65cb3f113 686 Gene3D G3DSA:1.50.10.10 334 676 2.4E-37 T 11-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 AMK58_04135 62a01f30e0f874367d6d09c65cb3f113 686 Pfam PF12439 Glycogen debranching enzyme N terminal 23 251 2.6E-57 T 11-10-2018 IPR024742 Glycogen debranching enzyme, bacterial and archaeal type, N-terminal AMK58_04135 62a01f30e0f874367d6d09c65cb3f113 686 TIGRFAM TIGR01561 gde_arch: putative glycogen debranching enzyme, archaeal type 24 620 6.9E-115 T 11-10-2018 IPR006451 Glycogen debranching enzyme, archaeal type AMK58_04135 62a01f30e0f874367d6d09c65cb3f113 686 SUPERFAMILY SSF48208 211 679 3.21E-75 T 11-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 AMK58_04135 62a01f30e0f874367d6d09c65cb3f113 686 Pfam PF06202 Amylo-alpha-1,6-glucosidase 321 677 2.0E-120 T 11-10-2018 IPR032790 Glycogen debranching enzyme, C-terminal KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-6798695|Reactome: R-HSA-70221 AMK58_24150 c7dd993c46399bc4495fdd57d76b8ae8 699 Gene3D G3DSA:3.40.228.10 143 353 3.2E-111 T 11-10-2018 AMK58_24150 c7dd993c46399bc4495fdd57d76b8ae8 699 Pfam PF01568 Molydopterin dinucleotide binding domain 580 683 1.5E-21 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 AMK58_24150 c7dd993c46399bc4495fdd57d76b8ae8 699 Pfam PF00384 Molybdopterin oxidoreductase 66 477 5.0E-48 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_24150 c7dd993c46399bc4495fdd57d76b8ae8 699 Gene3D G3DSA:2.40.40.20 557 699 1.3E-24 T 11-10-2018 AMK58_24150 c7dd993c46399bc4495fdd57d76b8ae8 699 Gene3D G3DSA:3.40.50.740 77 482 3.2E-111 T 11-10-2018 AMK58_24150 c7dd993c46399bc4495fdd57d76b8ae8 699 SUPERFAMILY SSF50692 571 697 8.36E-31 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily AMK58_24150 c7dd993c46399bc4495fdd57d76b8ae8 699 SMART SM00926 7 63 1.9E-14 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_24150 c7dd993c46399bc4495fdd57d76b8ae8 699 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 11 63 3.9E-7 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_24150 c7dd993c46399bc4495fdd57d76b8ae8 699 SUPERFAMILY SSF53706 11 581 2.49E-138 T 11-10-2018 AMK58_24150 c7dd993c46399bc4495fdd57d76b8ae8 699 Gene3D G3DSA:3.30.2070.10 437 516 3.2E-111 T 11-10-2018 AMK58_24150 c7dd993c46399bc4495fdd57d76b8ae8 699 Gene3D G3DSA:2.20.25.90 6 68 1.7E-7 T 11-10-2018 AMK58_13760 fc213762196875ee6b8faec16ac1ff0e 239 Pfam PF03725 3' exoribonuclease family, domain 2 159 224 3.0E-10 T 11-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMK58_13760 fc213762196875ee6b8faec16ac1ff0e 239 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 2 236 6.6E-114 T 11-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 AMK58_13760 fc213762196875ee6b8faec16ac1ff0e 239 Hamap MF_00564 Ribonuclease PH [rph]. 11 237 43.333 T 11-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 AMK58_13760 fc213762196875ee6b8faec16ac1ff0e 239 Pfam PF01138 3' exoribonuclease family, domain 1 10 139 3.7E-21 T 11-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMK58_13760 fc213762196875ee6b8faec16ac1ff0e 239 SUPERFAMILY SSF54211 1 181 2.63E-43 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMK58_13760 fc213762196875ee6b8faec16ac1ff0e 239 ProSitePatterns PS01277 Ribonuclease PH signature. 116 129 - T 11-10-2018 IPR018336 Ribonuclease PH, conserved site AMK58_13760 fc213762196875ee6b8faec16ac1ff0e 239 SUPERFAMILY SSF55666 153 236 1.7E-23 T 11-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMK58_13760 fc213762196875ee6b8faec16ac1ff0e 239 Gene3D G3DSA:3.30.230.70 10 238 2.3E-58 T 11-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMK58_17630 dbfdcbb3a6abda048d7fc1c17b1fe95f 155 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 10 135 6.1E-31 T 11-10-2018 IPR005031 Coenzyme Q-binding protein COQ10, START domain Reactome: R-HSA-611105 AMK58_17630 dbfdcbb3a6abda048d7fc1c17b1fe95f 155 SUPERFAMILY SSF55961 1 143 3.06E-38 T 11-10-2018 AMK58_17630 dbfdcbb3a6abda048d7fc1c17b1fe95f 155 Gene3D G3DSA:3.30.530.20 2 144 3.2E-48 T 11-10-2018 IPR023393 START-like domain superfamily AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Gene3D G3DSA:2.150.10.10 4583 4640 5.2E-13 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Gene3D G3DSA:2.60.40.10 4065 4162 6.6E-12 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Gene3D G3DSA:2.60.40.10 3303 3398 1.8E-13 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Gene3D G3DSA:2.60.40.10 3969 4064 2.9E-12 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Gene3D G3DSA:2.60.40.10 3588 3683 8.0E-13 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Gene3D G3DSA:2.60.40.10 3206 3302 1.3E-12 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Gene3D G3DSA:2.60.40.10 3874 3968 1.7E-12 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Gene3D G3DSA:2.60.40.10 3684 3778 3.4E-12 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Gene3D G3DSA:2.60.40.10 3779 3873 1.8E-13 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Gene3D G3DSA:2.60.40.10 3494 3587 1.3E-12 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Gene3D G3DSA:2.60.40.10 3399 3493 7.6E-13 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Gene3D G3DSA:2.150.10.10 4641 4758 3.3E-23 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Gene3D G3DSA:2.150.10.10 4536 4582 2.8E-11 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Pfam PF13753 Putative flagellar system-associated repeat 795 872 2.8E-26 T 11-10-2018 IPR028059 Putative flagellar system-associated repeat AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Pfam PF13753 Putative flagellar system-associated repeat 2168 2247 1.1E-17 T 11-10-2018 IPR028059 Putative flagellar system-associated repeat AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Pfam PF13753 Putative flagellar system-associated repeat 2647 2724 2.3E-20 T 11-10-2018 IPR028059 Putative flagellar system-associated repeat AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Pfam PF13753 Putative flagellar system-associated repeat 1586 1665 6.3E-25 T 11-10-2018 IPR028059 Putative flagellar system-associated repeat AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Pfam PF13753 Putative flagellar system-associated repeat 1695 1772 2.4E-20 T 11-10-2018 IPR028059 Putative flagellar system-associated repeat AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Pfam PF13753 Putative flagellar system-associated repeat 1198 1275 3.9E-24 T 11-10-2018 IPR028059 Putative flagellar system-associated repeat AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Pfam PF13753 Putative flagellar system-associated repeat 175 260 1.6E-4 T 11-10-2018 IPR028059 Putative flagellar system-associated repeat AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 SUPERFAMILY SSF51120 4600 4756 1.7E-30 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 SUPERFAMILY SSF51120 4497 4635 2.3E-25 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Gene3D G3DSA:2.150.10.10 4421 4535 1.2E-8 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 4674 4692 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Pfam PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella 2886 2952 9.4E-12 T 11-10-2018 AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Pfam PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella 2776 2842 3.9E-11 T 11-10-2018 AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Pfam PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella 1880 1945 1.8E-10 T 11-10-2018 AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Pfam PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella 2468 2533 1.7E-9 T 11-10-2018 AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Pfam PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella 1990 2055 1.4E-8 T 11-10-2018 AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Pfam PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella 2358 2424 5.8E-11 T 11-10-2018 AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 PRINTS PR00313 NodO calcium binding signature 4660 4668 1.7E-8 T 11-10-2018 AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 PRINTS PR00313 NodO calcium binding signature 4669 4678 1.7E-8 T 11-10-2018 AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 PRINTS PR00313 NodO calcium binding signature 4642 4650 1.7E-8 T 11-10-2018 AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 PRINTS PR00313 NodO calcium binding signature 4585 4596 1.7E-8 T 11-10-2018 AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 SUPERFAMILY SSF69318 2271 2546 4.32E-34 T 11-10-2018 AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 TIGRFAM TIGR02059 swm_rep_I: cyanobacterial long protein repeat 1593 1667 2.4E-17 T 11-10-2018 IPR011801 Cyanobacterial long protein repeat AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 TIGRFAM TIGR02059 swm_rep_I: cyanobacterial long protein repeat 800 874 1.7E-16 T 11-10-2018 IPR011801 Cyanobacterial long protein repeat AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 TIGRFAM TIGR02059 swm_rep_I: cyanobacterial long protein repeat 179 262 5.8E-5 T 11-10-2018 IPR011801 Cyanobacterial long protein repeat AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 TIGRFAM TIGR02059 swm_rep_I: cyanobacterial long protein repeat 1190 1277 4.9E-14 T 11-10-2018 IPR011801 Cyanobacterial long protein repeat AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 TIGRFAM TIGR02059 swm_rep_I: cyanobacterial long protein repeat 2633 2725 7.6E-7 T 11-10-2018 IPR011801 Cyanobacterial long protein repeat AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 TIGRFAM TIGR02059 swm_rep_I: cyanobacterial long protein repeat 1693 1773 4.6E-8 T 11-10-2018 IPR011801 Cyanobacterial long protein repeat AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 TIGRFAM TIGR02059 swm_rep_I: cyanobacterial long protein repeat 2166 2248 3.3E-7 T 11-10-2018 IPR011801 Cyanobacterial long protein repeat AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Gene3D G3DSA:2.60.40.10 3022 3119 1.7E-13 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Gene3D G3DSA:2.60.40.10 2552 2652 1.2E-11 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Gene3D G3DSA:2.60.40.10 2076 2173 6.3E-15 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 SUPERFAMILY SSF69318 1787 2068 3.79E-36 T 11-10-2018 AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Gene3D G3DSA:2.60.40.10 3120 3203 2.6E-12 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4534 4549 0.003 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4588 4604 0.003 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4605 4621 0.22 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4569 4586 0.057 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4678 4694 0.25 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4659 4676 0.0027 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4552 4568 13.0 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4499 4514 0.058 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4642 4658 0.0049 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4518 4532 0.25 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 Pfam PF14252 Domain of unknown function (DUF4347) 14 165 2.2E-43 T 11-10-2018 IPR025592 Domain of unknown function DUF4347 AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 4656 4674 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_18495 bb04688c4d9e3e40f0cfb2e76ec9261f 4762 SUPERFAMILY SSF69318 2749 3020 1.57E-33 T 11-10-2018 AMK58_11585 553a2fee317aa07f67cd33347ca24e1e 669 SMART SM01358 39 291 2.2E-43 T 11-10-2018 IPR032255 Helical bimodular sensor domain AMK58_11585 553a2fee317aa07f67cd33347ca24e1e 669 Gene3D G3DSA:1.20.1480.50 281 378 2.7E-18 T 11-10-2018 AMK58_11585 553a2fee317aa07f67cd33347ca24e1e 669 Pfam PF00672 HAMP domain 321 368 1.5E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_11585 553a2fee317aa07f67cd33347ca24e1e 669 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 476 633 1.2E-29 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_11585 553a2fee317aa07f67cd33347ca24e1e 669 Gene3D G3DSA:1.10.287.950 379 663 2.8E-57 T 11-10-2018 AMK58_11585 553a2fee317aa07f67cd33347ca24e1e 669 Pfam PF12729 Four helix bundle sensory module for signal transduction 7 140 7.2E-7 T 11-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain AMK58_11585 553a2fee317aa07f67cd33347ca24e1e 669 SMART SM00304 320 373 2.4E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_11585 553a2fee317aa07f67cd33347ca24e1e 669 SMART SM00283 409 663 3.9E-50 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_11585 553a2fee317aa07f67cd33347ca24e1e 669 SUPERFAMILY SSF58104 349 662 7.32E-65 T 11-10-2018 AMK58_18335 15b0e4809620e902572031beefe08385 654 Gene3D G3DSA:1.25.40.10 295 381 8.9E-8 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_18335 15b0e4809620e902572031beefe08385 654 Gene3D G3DSA:1.25.40.10 116 197 2.8E-13 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_18335 15b0e4809620e902572031beefe08385 654 Gene3D G3DSA:1.25.40.10 198 291 9.0E-13 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_18335 15b0e4809620e902572031beefe08385 654 SMART SM00028 78 111 11.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18335 15b0e4809620e902572031beefe08385 654 SMART SM00028 309 342 110.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18335 15b0e4809620e902572031beefe08385 654 SMART SM00028 213 246 0.0089 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18335 15b0e4809620e902572031beefe08385 654 SMART SM00028 44 77 31.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18335 15b0e4809620e902572031beefe08385 654 SMART SM00028 146 179 2.2 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18335 15b0e4809620e902572031beefe08385 654 SUPERFAMILY SSF48452 201 352 3.03E-12 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_18335 15b0e4809620e902572031beefe08385 654 SUPERFAMILY SSF53756 396 648 1.38E-23 T 11-10-2018 AMK58_18335 15b0e4809620e902572031beefe08385 654 Gene3D G3DSA:3.40.50.2000 520 649 3.0E-7 T 11-10-2018 AMK58_18335 15b0e4809620e902572031beefe08385 654 Gene3D G3DSA:1.25.40.10 7 115 1.9E-17 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_18335 15b0e4809620e902572031beefe08385 654 Pfam PF13428 Tetratricopeptide repeat 149 188 5.1E-5 T 11-10-2018 AMK58_18335 15b0e4809620e902572031beefe08385 654 Pfam PF13432 Tetratricopeptide repeat 217 280 1.1E-5 T 11-10-2018 AMK58_18335 15b0e4809620e902572031beefe08385 654 Pfam PF13432 Tetratricopeptide repeat 14 76 1.1E-6 T 11-10-2018 AMK58_18335 15b0e4809620e902572031beefe08385 654 SUPERFAMILY SSF48452 9 247 2.97E-28 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_05695 0e703974eb70ab3c1949d62ceb549d14 259 SUPERFAMILY SSF52172 137 250 2.42E-24 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_05695 0e703974eb70ab3c1949d62ceb549d14 259 Gene3D G3DSA:1.20.140.160 3 134 4.2E-32 T 11-10-2018 AMK58_05695 0e703974eb70ab3c1949d62ceb549d14 259 Pfam PF00072 Response regulator receiver domain 138 246 3.3E-15 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_05695 0e703974eb70ab3c1949d62ceb549d14 259 SUPERFAMILY SSF88659 80 134 3.36E-7 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMK58_05695 0e703974eb70ab3c1949d62ceb549d14 259 Pfam PF08281 Sigma-70, region 4 80 115 1.1E-7 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMK58_05695 0e703974eb70ab3c1949d62ceb549d14 259 SMART SM00448 136 246 1.1E-19 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_05695 0e703974eb70ab3c1949d62ceb549d14 259 Gene3D G3DSA:3.40.50.2300 135 254 3.9E-31 T 11-10-2018 AMK58_15660 82c3a5c2cfbcc0dce3860e41a7eab576 343 Gene3D G3DSA:3.40.50.920 202 334 9.9E-43 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMK58_15660 82c3a5c2cfbcc0dce3860e41a7eab576 343 Pfam PF02779 Transketolase, pyrimidine binding domain 4 189 4.9E-55 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMK58_15660 82c3a5c2cfbcc0dce3860e41a7eab576 343 SUPERFAMILY SSF52518 2 212 1.34E-64 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMK58_15660 82c3a5c2cfbcc0dce3860e41a7eab576 343 Gene3D G3DSA:3.40.50.970 1 201 1.4E-81 T 11-10-2018 AMK58_15660 82c3a5c2cfbcc0dce3860e41a7eab576 343 Pfam PF02780 Transketolase, C-terminal domain 203 325 4.2E-38 T 11-10-2018 IPR033248 Transketolase, C-terminal domain AMK58_15660 82c3a5c2cfbcc0dce3860e41a7eab576 343 SUPERFAMILY SSF52922 198 333 3.93E-38 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMK58_15660 82c3a5c2cfbcc0dce3860e41a7eab576 343 SMART SM00861 5 189 2.6E-63 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMK58_01905 d6d960f1b428fa5f7061dac9b3aa5f16 262 SUPERFAMILY SSF161098 64 248 4.58E-28 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_01905 d6d960f1b428fa5f7061dac9b3aa5f16 262 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 255 4.9E-25 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_01905 d6d960f1b428fa5f7061dac9b3aa5f16 262 Gene3D G3DSA:1.10.3720.10 61 255 6.9E-21 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_28880 6cc4ad80ae6269441adeabb20cb1bf84 1396 Pfam PF13439 Glycosyltransferase Family 4 687 895 2.4E-7 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AMK58_28880 6cc4ad80ae6269441adeabb20cb1bf84 1396 SUPERFAMILY SSF53756 685 1049 1.57E-26 T 11-10-2018 AMK58_28880 6cc4ad80ae6269441adeabb20cb1bf84 1396 Gene3D G3DSA:3.40.50.2000 910 1057 2.9E-9 T 11-10-2018 AMK58_28880 6cc4ad80ae6269441adeabb20cb1bf84 1396 SUPERFAMILY SSF48452 22 131 2.53E-6 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_28880 6cc4ad80ae6269441adeabb20cb1bf84 1396 Gene3D G3DSA:3.90.550.10 391 626 3.2E-32 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_28880 6cc4ad80ae6269441adeabb20cb1bf84 1396 Gene3D G3DSA:1.25.40.10 18 143 1.6E-6 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_28880 6cc4ad80ae6269441adeabb20cb1bf84 1396 Pfam PF00535 Glycosyl transferase family 2 399 512 4.0E-13 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMK58_28880 6cc4ad80ae6269441adeabb20cb1bf84 1396 SUPERFAMILY SSF53448 398 622 3.54E-36 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_28880 6cc4ad80ae6269441adeabb20cb1bf84 1396 Gene3D G3DSA:3.40.50.2000 678 898 2.6E-6 T 11-10-2018 AMK58_25135 5a0ded64757570de9e16679686f19812 470 Pfam PF13400 Putative Flp pilus-assembly TadE/G-like 14 59 3.2E-13 T 11-10-2018 IPR028087 Putative Flp pilus-assembly TadG-like, N-terminal AMK58_25135 5a0ded64757570de9e16679686f19812 470 SUPERFAMILY SSF53300 124 463 5.29E-18 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMK58_09370 52be01dedc9e8c21dfc2db5195d43b50 188 Pfam PF09285 Elongation factor P, C-terminal 130 185 1.5E-23 T 11-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 AMK58_09370 52be01dedc9e8c21dfc2db5195d43b50 188 Gene3D G3DSA:2.30.30.30 3 64 8.0E-19 T 11-10-2018 IPR014722 Ribosomal protein L2, domain 2 AMK58_09370 52be01dedc9e8c21dfc2db5195d43b50 188 ProSitePatterns PS01275 Elongation factor P signature. 151 170 - T 11-10-2018 IPR013852 Translation elongation factor P/YeiP, conserved site AMK58_09370 52be01dedc9e8c21dfc2db5195d43b50 188 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 5 61 3.4E-19 T 11-10-2018 IPR013185 Translation elongation factor, KOW-like AMK58_09370 52be01dedc9e8c21dfc2db5195d43b50 188 SUPERFAMILY SSF50249 66 127 1.67E-17 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_09370 52be01dedc9e8c21dfc2db5195d43b50 188 SMART SM01185 68 122 1.7E-25 T 11-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 AMK58_09370 52be01dedc9e8c21dfc2db5195d43b50 188 Gene3D G3DSA:2.40.50.140 65 128 1.1E-21 T 11-10-2018 AMK58_09370 52be01dedc9e8c21dfc2db5195d43b50 188 Pfam PF01132 Elongation factor P (EF-P) OB domain 70 122 3.9E-20 T 11-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 AMK58_09370 52be01dedc9e8c21dfc2db5195d43b50 188 SUPERFAMILY SSF50249 130 186 7.02E-17 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_09370 52be01dedc9e8c21dfc2db5195d43b50 188 PIRSF PIRSF005901 1 187 1.8E-67 T 11-10-2018 IPR020599 Translation elongation factor P/YeiP AMK58_09370 52be01dedc9e8c21dfc2db5195d43b50 188 Hamap MF_00141 Elongation factor P [efp]. 2 186 43.607 T 11-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 AMK58_09370 52be01dedc9e8c21dfc2db5195d43b50 188 SMART SM00841 130 185 2.6E-30 T 11-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 AMK58_09370 52be01dedc9e8c21dfc2db5195d43b50 188 SUPERFAMILY SSF50104 3 64 9.63E-16 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily AMK58_09370 52be01dedc9e8c21dfc2db5195d43b50 188 TIGRFAM TIGR00038 efp: translation elongation factor P 4 186 1.2E-70 T 11-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 AMK58_09370 52be01dedc9e8c21dfc2db5195d43b50 188 Gene3D G3DSA:2.40.50.140 130 187 2.1E-23 T 11-10-2018 AMK58_14110 9ce190ed20ba2ed12d3e7cfbae01508b 353 ProSitePatterns PS00356 LacI-type HTH domain signature. 25 43 - T 11-10-2018 AMK58_14110 9ce190ed20ba2ed12d3e7cfbae01508b 353 SMART SM00354 22 92 9.5E-19 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMK58_14110 9ce190ed20ba2ed12d3e7cfbae01508b 353 Gene3D G3DSA:1.10.260.40 14 80 3.8E-19 T 11-10-2018 AMK58_14110 9ce190ed20ba2ed12d3e7cfbae01508b 353 SUPERFAMILY SSF47413 22 80 6.44E-16 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMK58_14110 9ce190ed20ba2ed12d3e7cfbae01508b 353 Pfam PF00356 Bacterial regulatory proteins, lacI family 24 69 1.3E-13 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMK58_14110 9ce190ed20ba2ed12d3e7cfbae01508b 353 Pfam PF13377 Periplasmic binding protein-like domain 189 352 1.0E-28 T 11-10-2018 AMK58_14110 9ce190ed20ba2ed12d3e7cfbae01508b 353 SUPERFAMILY SSF53822 79 339 9.85E-50 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMK58_14110 9ce190ed20ba2ed12d3e7cfbae01508b 353 Gene3D G3DSA:3.40.50.2300 180 313 3.2E-59 T 11-10-2018 AMK58_14110 9ce190ed20ba2ed12d3e7cfbae01508b 353 Gene3D G3DSA:3.40.50.2300 84 329 3.2E-59 T 11-10-2018 AMK58_19925 385bb38184ba0886ab16df4f0b4c9531 299 SUPERFAMILY SSF103481 51 153 9.68E-17 T 11-10-2018 AMK58_19925 385bb38184ba0886ab16df4f0b4c9531 299 Pfam PF00892 EamA-like transporter family 22 150 4.1E-22 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_19925 385bb38184ba0886ab16df4f0b4c9531 299 Pfam PF00892 EamA-like transporter family 162 297 5.2E-20 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_19925 385bb38184ba0886ab16df4f0b4c9531 299 SUPERFAMILY SSF103481 197 298 2.22E-13 T 11-10-2018 AMK58_24930 02b7bdfa7211e8d427152c6611b1824a 374 Gene3D G3DSA:3.40.50.2000 8 179 2.7E-21 T 11-10-2018 AMK58_24930 02b7bdfa7211e8d427152c6611b1824a 374 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 144 304 9.8E-20 T 11-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 AMK58_24930 02b7bdfa7211e8d427152c6611b1824a 374 Gene3D G3DSA:3.40.50.2000 185 370 9.4E-29 T 11-10-2018 AMK58_24930 02b7bdfa7211e8d427152c6611b1824a 374 SUPERFAMILY SSF53756 12 368 1.16E-61 T 11-10-2018 AMK58_27795 02b7bdfa7211e8d427152c6611b1824a 374 Gene3D G3DSA:3.40.50.2000 8 179 2.7E-21 T 11-10-2018 AMK58_27795 02b7bdfa7211e8d427152c6611b1824a 374 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 144 304 9.8E-20 T 11-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 AMK58_27795 02b7bdfa7211e8d427152c6611b1824a 374 Gene3D G3DSA:3.40.50.2000 185 370 9.4E-29 T 11-10-2018 AMK58_27795 02b7bdfa7211e8d427152c6611b1824a 374 SUPERFAMILY SSF53756 12 368 1.16E-61 T 11-10-2018 AMK58_24355 b38603907b24278e889907e615fce681 227 Pfam PF01966 HD domain 34 141 2.2E-12 T 11-10-2018 IPR006674 HD domain AMK58_24355 b38603907b24278e889907e615fce681 227 SMART SM00471 28 152 6.9E-12 T 11-10-2018 IPR003607 HD/PDEase domain AMK58_24355 b38603907b24278e889907e615fce681 227 SUPERFAMILY SSF109604 13 225 8.98E-58 T 11-10-2018 AMK58_24355 b38603907b24278e889907e615fce681 227 Gene3D G3DSA:1.10.3210.50 9 227 6.8E-66 T 11-10-2018 AMK58_27295 d52ef8562b083d181bcc70a596347d5b 897 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 70 376 8.4E-54 T 11-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 AMK58_27295 d52ef8562b083d181bcc70a596347d5b 897 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 26 63 2.9E-10 T 11-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 AMK58_27295 d52ef8562b083d181bcc70a596347d5b 897 PIRSF PIRSF000853 6 896 0.0 T 11-10-2018 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMK58_27295 d52ef8562b083d181bcc70a596347d5b 897 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 535 887 3.0E-90 T 11-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 AMK58_27295 d52ef8562b083d181bcc70a596347d5b 897 Gene3D G3DSA:3.50.30.10 403 527 7.0E-79 T 11-10-2018 AMK58_27295 d52ef8562b083d181bcc70a596347d5b 897 SUPERFAMILY SSF56059 7 398 6.71E-148 T 11-10-2018 AMK58_27295 d52ef8562b083d181bcc70a596347d5b 897 Gene3D G3DSA:1.10.189.10 365 547 7.0E-79 T 11-10-2018 AMK58_27295 d52ef8562b083d181bcc70a596347d5b 897 Gene3D G3DSA:3.30.470.20 252 361 3.5E-39 T 11-10-2018 AMK58_27295 d52ef8562b083d181bcc70a596347d5b 897 Gene3D G3DSA:3.20.20.60 550 891 1.2E-150 T 11-10-2018 AMK58_27295 d52ef8562b083d181bcc70a596347d5b 897 Pfam PF00391 PEP-utilising enzyme, mobile domain 440 521 3.5E-26 T 11-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AMK58_27295 d52ef8562b083d181bcc70a596347d5b 897 Gene3D G3DSA:1.20.80.30 119 206 5.8E-106 T 11-10-2018 AMK58_27295 d52ef8562b083d181bcc70a596347d5b 897 SUPERFAMILY SSF51621 529 889 6.91E-131 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMK58_27295 d52ef8562b083d181bcc70a596347d5b 897 TIGRFAM TIGR01828 pyru_phos_dikin: pyruvate, phosphate dikinase 7 889 0.0 T 11-10-2018 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMK58_27295 d52ef8562b083d181bcc70a596347d5b 897 SUPERFAMILY SSF52009 406 530 1.44E-38 T 11-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 AMK58_27295 d52ef8562b083d181bcc70a596347d5b 897 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 468 479 - T 11-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 AMK58_27295 d52ef8562b083d181bcc70a596347d5b 897 Gene3D G3DSA:3.30.1490.20 19 251 5.8E-106 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMK58_08900 3d26812f37e940de04f2dbd36ebf6703 265 Pfam PF04305 Protein of unknown function (DUF455) 15 261 3.0E-105 T 11-10-2018 IPR007402 Protein of unknown function DUF455 AMK58_08900 3d26812f37e940de04f2dbd36ebf6703 265 PIRSF PIRSF012318 1 265 1.1E-96 T 11-10-2018 IPR011197 Uncharacterised conserved protein UCP012318 AMK58_08900 3d26812f37e940de04f2dbd36ebf6703 265 SUPERFAMILY SSF47240 73 218 4.78E-21 T 11-10-2018 IPR009078 Ferritin-like superfamily AMK58_26945 04db380f2b7ceaad4fa95bc9190c7ca5 266 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 88 252 2.8E-10 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_26945 04db380f2b7ceaad4fa95bc9190c7ca5 266 SUPERFAMILY SSF161098 4 252 2.06E-48 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_26945 04db380f2b7ceaad4fa95bc9190c7ca5 266 Gene3D G3DSA:1.10.3720.10 1 255 4.0E-43 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_14765 0ecc37f9e894d51e400da7892de7b606 122 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 42 89 5.6E-15 T 11-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMK58_14765 0ecc37f9e894d51e400da7892de7b606 122 Pfam PF02627 Carboxymuconolactone decarboxylase family 24 106 8.1E-21 T 11-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMK58_14765 0ecc37f9e894d51e400da7892de7b606 122 Gene3D G3DSA:1.20.1290.10 2 115 6.1E-34 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMK58_14765 0ecc37f9e894d51e400da7892de7b606 122 SUPERFAMILY SSF69118 7 108 1.03E-28 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMK58_21580 af9e2a647b80b45ad4791d87ad358c9f 558 SMART SM00304 229 281 5.7E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_21580 af9e2a647b80b45ad4791d87ad358c9f 558 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 423 452 1.7E-15 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_21580 af9e2a647b80b45ad4791d87ad358c9f 558 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 394 421 1.7E-15 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_21580 af9e2a647b80b45ad4791d87ad358c9f 558 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 313 342 1.7E-15 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_21580 af9e2a647b80b45ad4791d87ad358c9f 558 SUPERFAMILY SSF58104 249 558 3.66E-57 T 11-10-2018 AMK58_21580 af9e2a647b80b45ad4791d87ad358c9f 558 Gene3D G3DSA:1.10.287.950 229 558 6.3E-58 T 11-10-2018 AMK58_21580 af9e2a647b80b45ad4791d87ad358c9f 558 SMART SM00283 296 557 8.4E-39 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_21580 af9e2a647b80b45ad4791d87ad358c9f 558 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 341 523 9.9E-31 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_21580 af9e2a647b80b45ad4791d87ad358c9f 558 Pfam PF00672 HAMP domain 230 277 2.3E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_09135 d81b010a3eeee4e8706cc28e20d41ed5 132 Pfam PF09345 Domain of unknown function (DUF1987) 7 125 2.3E-43 T 11-10-2018 IPR018530 Domain of unknown function DUF1987 AMK58_11935 cbba3714f163fcde0470bf7efcc0c4ce 370 SUPERFAMILY SSF161098 142 329 5.76E-20 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_11935 cbba3714f163fcde0470bf7efcc0c4ce 370 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 165 347 2.2E-29 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_11935 cbba3714f163fcde0470bf7efcc0c4ce 370 Gene3D G3DSA:1.10.3720.10 136 347 6.3E-17 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_26055 46763f0065543e84c2485958c86ec788 484 Gene3D G3DSA:3.40.309.10 256 448 3.8E-152 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMK58_26055 46763f0065543e84c2485958c86ec788 484 Gene3D G3DSA:3.40.605.10 23 474 3.8E-152 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMK58_26055 46763f0065543e84c2485958c86ec788 484 SUPERFAMILY SSF53720 8 481 2.75E-148 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMK58_26055 46763f0065543e84c2485958c86ec788 484 Pfam PF00171 Aldehyde dehydrogenase family 18 479 1.0E-149 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMK58_26055 46763f0065543e84c2485958c86ec788 484 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 280 291 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AMK58_14155 cdb51c3ed9c7a4a81aa9b20ba4d9ba64 390 Pfam PF13823 Alcohol dehydrogenase GroES-associated 1 23 5.4E-11 T 11-10-2018 IPR027399 Alcohol dehydrogenase GroES-associated AMK58_14155 cdb51c3ed9c7a4a81aa9b20ba4d9ba64 390 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 11-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AMK58_14155 cdb51c3ed9c7a4a81aa9b20ba4d9ba64 390 Gene3D G3DSA:3.90.180.10 9 376 1.1E-131 T 11-10-2018 AMK58_14155 cdb51c3ed9c7a4a81aa9b20ba4d9ba64 390 SUPERFAMILY SSF51735 164 352 7.04E-65 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_14155 cdb51c3ed9c7a4a81aa9b20ba4d9ba64 390 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 150 3.5E-29 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMK58_14155 cdb51c3ed9c7a4a81aa9b20ba4d9ba64 390 Pfam PF00107 Zinc-binding dehydrogenase 197 274 1.2E-11 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMK58_14155 cdb51c3ed9c7a4a81aa9b20ba4d9ba64 390 SUPERFAMILY SSF50129 1 197 2.74E-60 T 11-10-2018 IPR011032 GroES-like superfamily AMK58_14155 cdb51c3ed9c7a4a81aa9b20ba4d9ba64 390 Gene3D G3DSA:3.40.50.720 178 341 1.1E-131 T 11-10-2018 AMK58_26290 29b291746061ece897d810e312203d72 584 Gene3D G3DSA:3.40.50.970 357 572 1.9E-58 T 11-10-2018 AMK58_26290 29b291746061ece897d810e312203d72 584 SUPERFAMILY SSF52467 157 357 1.01E-39 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AMK58_26290 29b291746061ece897d810e312203d72 584 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 169 3.3E-44 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AMK58_26290 29b291746061ece897d810e312203d72 584 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 200 327 1.2E-27 T 11-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AMK58_26290 29b291746061ece897d810e312203d72 584 Gene3D G3DSA:3.40.50.970 1 180 3.4E-56 T 11-10-2018 AMK58_26290 29b291746061ece897d810e312203d72 584 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 389 536 7.8E-37 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMK58_26290 29b291746061ece897d810e312203d72 584 SUPERFAMILY SSF52518 366 555 4.29E-58 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMK58_26290 29b291746061ece897d810e312203d72 584 Gene3D G3DSA:3.40.50.1220 188 343 2.9E-41 T 11-10-2018 AMK58_26290 29b291746061ece897d810e312203d72 584 SUPERFAMILY SSF52518 4 175 3.34E-46 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMK58_14255 23cc6a85d9d2935830c7ad1c402bc552 302 Gene3D G3DSA:3.40.190.10 168 265 2.4E-53 T 11-10-2018 AMK58_14255 23cc6a85d9d2935830c7ad1c402bc552 302 Gene3D G3DSA:1.10.10.10 1 86 2.0E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_14255 23cc6a85d9d2935830c7ad1c402bc552 302 Gene3D G3DSA:3.40.190.10 92 289 2.4E-53 T 11-10-2018 AMK58_14255 23cc6a85d9d2935830c7ad1c402bc552 302 SUPERFAMILY SSF46785 3 82 2.45E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_14255 23cc6a85d9d2935830c7ad1c402bc552 302 SUPERFAMILY SSF53850 91 291 3.8E-36 T 11-10-2018 AMK58_14255 23cc6a85d9d2935830c7ad1c402bc552 302 Pfam PF03466 LysR substrate binding domain 93 293 8.3E-25 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_14255 23cc6a85d9d2935830c7ad1c402bc552 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 1.8E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_14980 b5551632c807899f994a1a799595688c 659 Pfam PF13193 AMP-binding enzyme C-terminal domain 549 621 4.6E-9 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMK58_14980 b5551632c807899f994a1a799595688c 659 SUPERFAMILY SSF56801 45 633 1.57E-123 T 11-10-2018 AMK58_14980 b5551632c807899f994a1a799595688c 659 ProSitePatterns PS00455 Putative AMP-binding domain signature. 277 288 - T 11-10-2018 IPR020845 AMP-binding, conserved site AMK58_14980 b5551632c807899f994a1a799595688c 659 Gene3D G3DSA:3.40.50.12780 85 529 3.3E-55 T 11-10-2018 AMK58_14980 b5551632c807899f994a1a799595688c 659 TIGRFAM TIGR01217 ac_ac_CoA_syn: acetoacetate-CoA ligase 12 657 8.4E-290 T 11-10-2018 IPR005914 Acetoacetyl-CoA synthase GO:0006629|GO:0030729 KEGG: 00280+6.2.1.16|KEGG: 00650+6.2.1.16|Reactome: R-HSA-77111 AMK58_14980 b5551632c807899f994a1a799595688c 659 Gene3D G3DSA:3.30.300.30 532 655 6.0E-17 T 11-10-2018 AMK58_14980 b5551632c807899f994a1a799595688c 659 Pfam PF00501 AMP-binding enzyme 105 533 4.1E-42 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMK58_03830 561f77f9a63a50301e3568fab56464d0 676 SUPERFAMILY SSF53092 240 360 4.71E-5 T 11-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal AMK58_03830 561f77f9a63a50301e3568fab56464d0 676 SUPERFAMILY SSF53092 77 204 2.09E-12 T 11-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal AMK58_03830 561f77f9a63a50301e3568fab56464d0 676 Pfam PF00557 Metallopeptidase family M24 388 600 7.8E-49 T 11-10-2018 IPR000994 Peptidase M24 AMK58_03830 561f77f9a63a50301e3568fab56464d0 676 Pfam PF01321 Creatinase/Prolidase N-terminal domain 83 215 5.8E-18 T 11-10-2018 IPR000587 Creatinase, N-terminal GO:0016787 AMK58_03830 561f77f9a63a50301e3568fab56464d0 676 Pfam PF16188 C-terminal region of peptidase_M24 611 674 6.7E-23 T 11-10-2018 IPR032416 Peptidase M24, C-terminal domain AMK58_03830 561f77f9a63a50301e3568fab56464d0 676 Gene3D G3DSA:3.90.230.10 378 675 1.4E-101 T 11-10-2018 AMK58_03830 561f77f9a63a50301e3568fab56464d0 676 SUPERFAMILY SSF55920 381 636 1.24E-59 T 11-10-2018 IPR036005 Creatinase/aminopeptidase-like AMK58_03830 561f77f9a63a50301e3568fab56464d0 676 Pfam PF16189 Creatinase/Prolidase N-terminal domain 224 384 6.9E-39 T 11-10-2018 AMK58_03830 561f77f9a63a50301e3568fab56464d0 676 Gene3D G3DSA:3.40.350.10 223 366 8.9E-28 T 11-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal AMK58_03830 561f77f9a63a50301e3568fab56464d0 676 Gene3D G3DSA:3.40.350.10 77 222 2.8E-37 T 11-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal AMK58_10875 6a9553de2907154d8e1ef28034355b9a 158 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 55 92 - T 11-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 AMK58_10875 6a9553de2907154d8e1ef28034355b9a 158 SUPERFAMILY SSF53927 2 155 2.17E-47 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 AMK58_10875 6a9553de2907154d8e1ef28034355b9a 158 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 5 103 1.2E-24 T 11-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain AMK58_10875 6a9553de2907154d8e1ef28034355b9a 158 Gene3D G3DSA:3.40.140.10 5 158 7.4E-59 T 11-10-2018 AMK58_00790 91bbd0723138fd42c6bcbb002d40e566 269 Pfam PF04228 Putative neutral zinc metallopeptidase 11 264 2.7E-111 T 11-10-2018 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative AMK58_00790 91bbd0723138fd42c6bcbb002d40e566 269 SUPERFAMILY SSF55486 67 200 1.47E-5 T 11-10-2018 AMK58_10930 4efd542bd3069a928aa111af6d40372b 204 Gene3D G3DSA:2.40.40.10 55 147 7.9E-37 T 11-10-2018 IPR036908 RlpA-like domain superfamily AMK58_10930 4efd542bd3069a928aa111af6d40372b 204 SUPERFAMILY SSF50685 61 144 4.19E-12 T 11-10-2018 IPR036908 RlpA-like domain superfamily AMK58_10930 4efd542bd3069a928aa111af6d40372b 204 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 58 175 5.4E-39 T 11-10-2018 IPR012997 Rare lipoprotein A AMK58_10930 4efd542bd3069a928aa111af6d40372b 204 Pfam PF03330 Lytic transglycolase 57 145 4.8E-24 T 11-10-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain AMK58_10930 4efd542bd3069a928aa111af6d40372b 204 Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. 8 148 21.62 T 11-10-2018 IPR034718 Endolytic peptidoglycan transglycosylase RlpA GO:0016829 AMK58_20875 b00003a978713a1cb4370c4e4d413596 514 Pfam PF02885 Glycosyl transferase family, helical bundle domain 193 245 1.2E-15 T 11-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMK58_20875 b00003a978713a1cb4370c4e4d413596 514 SUPERFAMILY SSF46785 40 116 4.76E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_20875 b00003a978713a1cb4370c4e4d413596 514 Gene3D G3DSA:1.20.970.10 191 248 2.3E-18 T 11-10-2018 AMK58_20875 b00003a978713a1cb4370c4e4d413596 514 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 41 99 4.5E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_20875 b00003a978713a1cb4370c4e4d413596 514 SUPERFAMILY SSF52418 255 502 2.49E-34 T 11-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMK58_20875 b00003a978713a1cb4370c4e4d413596 514 SUPERFAMILY SSF47648 192 246 3.01E-14 T 11-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMK58_20875 b00003a978713a1cb4370c4e4d413596 514 Gene3D G3DSA:3.40.1030.10 274 510 6.3E-27 T 11-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMK58_20875 b00003a978713a1cb4370c4e4d413596 514 Gene3D G3DSA:1.10.10.10 36 118 1.7E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_01910 0e06aeb142d07f9bb3e5518739d7ee64 310 Gene3D G3DSA:3.40.190.10 15 128 3.1E-13 T 11-10-2018 AMK58_01910 0e06aeb142d07f9bb3e5518739d7ee64 310 Gene3D G3DSA:3.40.190.10 129 310 5.9E-36 T 11-10-2018 AMK58_01910 0e06aeb142d07f9bb3e5518739d7ee64 310 SUPERFAMILY SSF53850 20 237 3.01E-42 T 11-10-2018 AMK58_01910 0e06aeb142d07f9bb3e5518739d7ee64 310 SMART SM00062 22 242 1.7E-6 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMK58_01910 0e06aeb142d07f9bb3e5518739d7ee64 310 Pfam PF09084 NMT1/THI5 like 30 236 6.4E-25 T 11-10-2018 IPR015168 SsuA/THI5-like AMK58_29015 1c99bfe8d7711632bab98b288e684da8 828 Gene3D G3DSA:3.90.550.10 153 405 2.7E-29 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_29015 1c99bfe8d7711632bab98b288e684da8 828 Pfam PF00534 Glycosyl transferases group 1 745 814 3.8E-6 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 AMK58_29015 1c99bfe8d7711632bab98b288e684da8 828 Gene3D G3DSA:3.40.50.2000 682 825 3.4E-8 T 11-10-2018 AMK58_29015 1c99bfe8d7711632bab98b288e684da8 828 Pfam PF00535 Glycosyl transferase family 2 170 347 6.7E-16 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMK58_29015 1c99bfe8d7711632bab98b288e684da8 828 SUPERFAMILY SSF53448 168 397 7.07E-36 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_29015 1c99bfe8d7711632bab98b288e684da8 828 SUPERFAMILY SSF53756 456 821 1.57E-19 T 11-10-2018 AMK58_02140 bf9fda0dc9629e7bc88d7bc7bf2e926a 1618 Pfam PF05088 Bacterial NAD-glutamate dehydrogenase 78 1613 0.0 T 11-10-2018 IPR028971 NAD-glutamate dehydrogenase GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 AMK58_02140 bf9fda0dc9629e7bc88d7bc7bf2e926a 1618 SUPERFAMILY SSF51735 958 1294 9.19E-32 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_02140 bf9fda0dc9629e7bc88d7bc7bf2e926a 1618 PIRSF PIRSF036761 2 1618 0.0 T 11-10-2018 IPR007780 NAD-glutamate dehydrogenase, bacteria GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 AMK58_02140 bf9fda0dc9629e7bc88d7bc7bf2e926a 1618 SUPERFAMILY SSF53223 766 953 3.36E-23 T 11-10-2018 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Gene3D G3DSA:2.150.10.10 2988 3058 1.4E-12 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2171 2189 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2180 2198 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 833 851 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Gene3D G3DSA:2.150.10.10 1496 1622 8.9E-22 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Gene3D G3DSA:2.150.10.10 304 456 1.1E-27 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Gene3D G3DSA:2.150.10.10 1137 1287 1.6E-28 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Gene3D G3DSA:2.150.10.10 473 631 1.5E-26 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Gene3D G3DSA:2.150.10.10 979 1128 1.8E-26 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 SUPERFAMILY SSF51120 2489 2610 5.1E-26 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 SUPERFAMILY SSF51120 4705 4807 2.22E-16 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 515 533 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 506 524 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 SUPERFAMILY SSF51120 447 622 1.27E-22 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Gene3D G3DSA:2.150.10.10 4783 4853 4.6E-13 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Gene3D G3DSA:2.150.10.10 4708 4782 1.8E-7 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 SUPERFAMILY SSF51120 2834 2985 1.22E-22 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Gene3D G3DSA:2.150.10.10 2479 2528 3.1E-10 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 SUPERFAMILY SSF51120 639 789 2.88E-23 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2189 2207 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 SUPERFAMILY SSF141072 4407 4527 7.98E-23 T 11-10-2018 IPR038081 CalX-like domain superfamily AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 SUPERFAMILY SSF51120 3000 3187 7.25E-25 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 4887 4905 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2369 2387 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Gene3D G3DSA:2.150.10.10 1630 1658 6.6E-6 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00094 von Willebrand factor type D domain 3893 4049 1.9E-13 T 11-10-2018 IPR001846 von Willebrand factor, type D domain AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2541 2559 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2008 2026 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 185 203 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1183 1201 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 332 350 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 3227 3245 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2360 2378 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 341 359 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2351 2369 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 SUPERFAMILY SSF51120 967 1121 4.45E-23 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 3080 3098 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1345 1363 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1677 1695 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Gene3D G3DSA:2.150.10.10 130 289 1.0E-26 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1999 2017 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 SUPERFAMILY SSF51120 2308 2464 3.66E-28 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1508 1526 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 SUPERFAMILY SSF51120 2671 2817 1.19E-21 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Gene3D G3DSA:2.150.10.10 3418 3521 1.4E-13 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Gene3D G3DSA:2.150.10.10 2302 2350 3.2E-11 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 SUPERFAMILY SSF51120 1300 1446 5.49E-23 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1845 1863 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1499 1517 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 SUPERFAMILY SSF51120 4798 4965 8.97E-33 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 4842 4860 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 668 686 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1011 1029 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2852 2870 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 677 695 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 SUPERFAMILY SSF51120 3179 3347 3.27E-24 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1165 1183 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1490 1508 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2843 2861 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Gene3D G3DSA:2.150.10.10 795 962 2.1E-28 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Gene3D G3DSA:2.150.10.10 1799 1951 1.9E-28 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Gene3D G3DSA:2.150.10.10 3188 3354 1.6E-26 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Gene3D G3DSA:2.150.10.10 1299 1451 1.2E-26 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Gene3D G3DSA:2.150.10.10 2529 2658 2.1E-23 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Gene3D G3DSA:2.150.10.10 2169 2274 2.0E-22 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1020 1038 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 SUPERFAMILY SSF51120 2128 2247 4.97E-30 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 4833 4851 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 686 704 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 3062 3080 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2861 2879 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1002 1020 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 3083 3100 0.024 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2883 2899 0.037 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2544 2560 5.3 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4872 4889 0.0041 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 855 871 6.8 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1804 1820 1.7 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 672 688 0.049 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1331 1347 0.89 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 354 370 0.028 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 3011 3028 10.0 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 3212 3229 0.21 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2328 2344 0.095 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4893 4907 6.6 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2157 2173 13.0 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 482 499 0.011 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 153 169 1.7 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 987 1004 0.02 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1511 1528 0.0054 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1312 1329 0.35 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1975 1992 0.062 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 318 334 0.11 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4855 4871 4.2 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1169 1185 0.024 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1349 1365 2.0 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 690 706 6.8 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1466 1483 0.93 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 837 853 0.16 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2372 2389 0.57 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 3048 3064 0.55 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2138 2155 0.0072 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1186 1202 0.016 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4801 4817 0.8 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1635 1652 0.4 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4783 4799 0.27 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 171 187 0.38 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2309 2326 1.4 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4748 4763 3.1 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2011 2028 0.04 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2526 2543 0.061 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2490 2507 1.3 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 3065 3082 0.66 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 3424 3440 0.05 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2838 2854 0.052 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2864 2881 0.13 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2508 2525 0.25 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 819 835 0.15 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 501 517 0.16 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 3388 3404 0.084 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2354 2371 0.3 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4836 4853 0.69 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2193 2209 0.0087 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1151 1167 0.18 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 336 352 0.82 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1654 1670 0.082 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1849 1864 1.5 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2175 2191 0.016 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 653 670 0.49 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1024 1040 3.9 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 3231 3247 0.22 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 3249 3265 0.24 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 24 40 1.8 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 3406 3422 0.13 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1006 1022 0.87 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2702 2719 0.093 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 3030 3046 1.2 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1494 1510 1.1 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2684 2701 0.075 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4818 4835 0.12 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1682 1697 0.33 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2720 2736 0.074 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 5 22 0.056 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1831 1847 2.8 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 189 205 0.095 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 519 535 0.012 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Gene3D G3DSA:2.150.10.10 4854 4972 5.7E-24 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF03160 Calx-beta domain 4277 4383 6.6E-5 T 11-10-2018 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF03160 Calx-beta domain 4423 4503 1.3E-5 T 11-10-2018 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF03160 Calx-beta domain 3758 3853 1.2E-6 T 11-10-2018 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF03160 Calx-beta domain 4166 4260 0.0014 T 11-10-2018 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 4851 4869 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 SUPERFAMILY SSF51120 1632 1783 1.96E-21 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 SUPERFAMILY SSF141072 4291 4406 4.45E-20 T 11-10-2018 IPR038081 CalX-like domain superfamily AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 SUPERFAMILY SSF51120 1138 1283 6.93E-24 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 SUPERFAMILY SSF51120 1964 2112 3.53E-24 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1836 1854 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1336 1354 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 SUPERFAMILY SSF51120 1463 1612 1.03E-24 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Gene3D G3DSA:2.150.10.10 3366 3417 4.3E-10 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 SMART SM00237 4396 4503 0.007 T 11-10-2018 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 SMART SM00237 4276 4383 0.0064 T 11-10-2018 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 SMART SM00237 3753 3854 4.8E-6 T 11-10-2018 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 SMART SM00237 4156 4260 0.024 T 11-10-2018 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2870 2888 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 SUPERFAMILY SSF51120 273 440 4.97E-22 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 3420 3438 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 176 194 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2717 2735 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 3429 3447 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Gene3D G3DSA:2.150.10.10 3059 3187 6.6E-26 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Gene3D G3DSA:2.150.10.10 1659 1789 2.9E-21 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Gene3D G3DSA:2.150.10.10 2669 2705 1.1E-6 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Gene3D G3DSA:2.150.10.10 2706 2822 1.9E-22 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Gene3D G3DSA:2.150.10.10 2118 2168 6.6E-10 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Gene3D G3DSA:2.150.10.10 1956 2114 2.2E-28 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Gene3D G3DSA:2.150.10.10 661 794 2.4E-26 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 SUPERFAMILY SSF141072 4165 4285 1.83E-19 T 11-10-2018 IPR038081 CalX-like domain superfamily AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1174 1192 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 497 515 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 3236 3254 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Gene3D G3DSA:2.150.10.10 2829 2869 1.8E-8 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Gene3D G3DSA:2.150.10.10 1461 1495 6.3E-6 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Gene3D G3DSA:2.150.10.10 2 125 1.2E-23 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Gene3D G3DSA:2.150.10.10 2870 2987 7.8E-20 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Gene3D G3DSA:2.150.10.10 2351 2474 3.4E-28 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 851 869 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 842 860 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1659 1677 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 SUPERFAMILY SSF141072 3758 3879 1.96E-24 T 11-10-2018 IPR038081 CalX-like domain superfamily AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Gene3D G3DSA:2.60.40.2030 3759 3878 7.0E-19 T 11-10-2018 IPR038081 CalX-like domain superfamily AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Gene3D G3DSA:2.60.40.2030 4166 4285 1.7E-13 T 11-10-2018 IPR038081 CalX-like domain superfamily AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Gene3D G3DSA:2.60.40.2030 4417 4524 5.1E-17 T 11-10-2018 IPR038081 CalX-like domain superfamily AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 SUPERFAMILY SSF51120 1800 1946 3.53E-24 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 350 368 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Pfam PF06119 Nidogen-like 3659 3746 3.9E-8 T 11-10-2018 IPR003886 NIDO domain GO:0007160 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 167 185 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 3245 3263 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1327 1345 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 SMART SM00539 3605 3751 0.0026 T 11-10-2018 IPR003886 NIDO domain GO:0007160 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 Gene3D G3DSA:2.60.40.2030 4291 4416 6.9E-15 T 11-10-2018 IPR038081 CalX-like domain superfamily AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 20 38 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2708 2726 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 SMART SM00216 3878 4048 1.6E-6 T 11-10-2018 IPR001846 von Willebrand factor, type D domain AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 SUPERFAMILY SSF51120 3367 3484 1.4E-17 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 SUPERFAMILY SSF51120 804 957 2.62E-25 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 SUPERFAMILY SSF51120 137 281 1.16E-22 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 PRINTS PR00313 NodO calcium binding signature 363 372 2.6E-9 T 11-10-2018 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 PRINTS PR00313 NodO calcium binding signature 345 353 2.6E-9 T 11-10-2018 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 PRINTS PR00313 NodO calcium binding signature 354 362 2.6E-9 T 11-10-2018 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 PRINTS PR00313 NodO calcium binding signature 186 197 2.6E-9 T 11-10-2018 AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1827 1845 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2532 2550 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_25315 560f28207ff3824ef6d655e4e631e59b 4975 SUPERFAMILY SSF51120 4 120 1.24E-15 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_22625 ca4006d8f6a1acf744e71112d58aaa0c 224 Gene3D G3DSA:1.10.287.470 40 99 1.1E-35 T 11-10-2018 AMK58_22625 ca4006d8f6a1acf744e71112d58aaa0c 224 SUPERFAMILY SSF111369 3 190 5.62E-21 T 11-10-2018 AMK58_22625 ca4006d8f6a1acf744e71112d58aaa0c 224 Gene3D G3DSA:2.40.30.170 2 216 1.1E-35 T 11-10-2018 AMK58_22625 ca4006d8f6a1acf744e71112d58aaa0c 224 Gene3D G3DSA:2.40.50.100 6 138 1.1E-35 T 11-10-2018 AMK58_22625 ca4006d8f6a1acf744e71112d58aaa0c 224 Pfam PF13437 HlyD family secretion protein 104 200 9.1E-18 T 11-10-2018 AMK58_22625 ca4006d8f6a1acf744e71112d58aaa0c 224 Pfam PF13533 Biotin-lipoyl like 10 54 8.7E-8 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain AMK58_22625 ca4006d8f6a1acf744e71112d58aaa0c 224 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 2 216 9.0E-34 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMK58_14205 b75f2e1b04d2a5decf4f6dd9f8af4ea2 682 Pfam PF02540 NAD synthase 349 523 6.9E-22 T 11-10-2018 IPR022310 NAD/GMP synthase AMK58_14205 b75f2e1b04d2a5decf4f6dd9f8af4ea2 682 Hamap MF_02090 Glutamine-dependent NAD(+) synthetase [nadE]. 12 670 28.332 T 11-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 AMK58_14205 b75f2e1b04d2a5decf4f6dd9f8af4ea2 682 SUPERFAMILY SSF52402 327 649 4.93E-64 T 11-10-2018 AMK58_14205 b75f2e1b04d2a5decf4f6dd9f8af4ea2 682 Gene3D G3DSA:1.10.10.1140 560 682 4.3E-51 T 11-10-2018 AMK58_14205 b75f2e1b04d2a5decf4f6dd9f8af4ea2 682 SUPERFAMILY SSF56317 11 300 3.01E-49 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMK58_14205 b75f2e1b04d2a5decf4f6dd9f8af4ea2 682 Gene3D G3DSA:3.60.110.10 1 324 7.5E-86 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMK58_14205 b75f2e1b04d2a5decf4f6dd9f8af4ea2 682 PIRSF PIRSF006630 9 672 7.1E-165 T 11-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 AMK58_14205 b75f2e1b04d2a5decf4f6dd9f8af4ea2 682 Gene3D G3DSA:3.40.50.620 326 545 2.8E-64 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_14205 b75f2e1b04d2a5decf4f6dd9f8af4ea2 682 Pfam PF00795 Carbon-nitrogen hydrolase 13 286 1.2E-13 T 11-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 AMK58_15645 037646fc7912c3666b32577e6c3d8b1d 644 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 356 369 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AMK58_15645 037646fc7912c3666b32577e6c3d8b1d 644 Gene3D G3DSA:3.40.50.300 323 504 5.2E-59 T 11-10-2018 AMK58_15645 037646fc7912c3666b32577e6c3d8b1d 644 Pfam PF01590 GAF domain 79 199 5.6E-6 T 11-10-2018 IPR003018 GAF domain GO:0005515 AMK58_15645 037646fc7912c3666b32577e6c3d8b1d 644 SUPERFAMILY SSF55781 62 203 1.37E-5 T 11-10-2018 AMK58_15645 037646fc7912c3666b32577e6c3d8b1d 644 SMART SM00091 220 288 0.0094 T 11-10-2018 IPR000014 PAS domain AMK58_15645 037646fc7912c3666b32577e6c3d8b1d 644 Gene3D G3DSA:3.30.450.20 223 306 2.3E-6 T 11-10-2018 AMK58_15645 037646fc7912c3666b32577e6c3d8b1d 644 Pfam PF00158 Sigma-54 interaction domain 333 496 2.4E-64 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AMK58_15645 037646fc7912c3666b32577e6c3d8b1d 644 SUPERFAMILY SSF46689 602 637 7.17E-6 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_15645 037646fc7912c3666b32577e6c3d8b1d 644 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 544 553 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site AMK58_15645 037646fc7912c3666b32577e6c3d8b1d 644 SUPERFAMILY SSF55785 229 301 5.41E-7 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_15645 037646fc7912c3666b32577e6c3d8b1d 644 Gene3D G3DSA:1.10.8.60 505 580 1.1E-12 T 11-10-2018 AMK58_15645 037646fc7912c3666b32577e6c3d8b1d 644 SMART SM00382 352 496 6.6E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_15645 037646fc7912c3666b32577e6c3d8b1d 644 Gene3D G3DSA:1.10.10.60 601 638 8.3E-8 T 11-10-2018 AMK58_15645 037646fc7912c3666b32577e6c3d8b1d 644 Gene3D G3DSA:3.30.450.40 16 207 2.1E-41 T 11-10-2018 IPR029016 GAF-like domain superfamily AMK58_15645 037646fc7912c3666b32577e6c3d8b1d 644 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 419 434 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AMK58_15645 037646fc7912c3666b32577e6c3d8b1d 644 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 601 618 3.8E-5 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMK58_15645 037646fc7912c3666b32577e6c3d8b1d 644 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 618 638 3.8E-5 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMK58_15645 037646fc7912c3666b32577e6c3d8b1d 644 SUPERFAMILY SSF52540 333 574 1.38E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_15645 037646fc7912c3666b32577e6c3d8b1d 644 Pfam PF02954 Bacterial regulatory protein, Fis family 603 635 4.0E-5 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMK58_05715 a265d27cb18a9a3fbd620a39f39019c7 337 TIGRFAM TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein 2 337 1.1E-165 T 11-10-2018 IPR014182 Alcohol dehydrogenase, zinc-binding type 1 GO:0008270 AMK58_05715 a265d27cb18a9a3fbd620a39f39019c7 337 SMART SM00829 13 334 3.6E-11 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMK58_05715 a265d27cb18a9a3fbd620a39f39019c7 337 Pfam PF13602 Zinc-binding dehydrogenase 194 334 5.8E-21 T 11-10-2018 AMK58_05715 a265d27cb18a9a3fbd620a39f39019c7 337 Gene3D G3DSA:3.40.50.720 128 273 1.2E-110 T 11-10-2018 AMK58_05715 a265d27cb18a9a3fbd620a39f39019c7 337 SUPERFAMILY SSF51735 117 286 3.7E-36 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_05715 a265d27cb18a9a3fbd620a39f39019c7 337 Gene3D G3DSA:3.90.180.10 22 334 1.2E-110 T 11-10-2018 AMK58_05715 a265d27cb18a9a3fbd620a39f39019c7 337 SUPERFAMILY SSF50129 10 147 3.65E-33 T 11-10-2018 IPR011032 GroES-like superfamily AMK58_05715 a265d27cb18a9a3fbd620a39f39019c7 337 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 32 93 4.2E-5 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMK58_10420 347f17d37faa75a80615c76292fa2a88 1389 Gene3D G3DSA:1.10.274.100 491 560 5.6E-23 T 11-10-2018 AMK58_10420 347f17d37faa75a80615c76292fa2a88 1389 Gene3D G3DSA:1.10.274.100 561 639 1.5E-14 T 11-10-2018 AMK58_10420 347f17d37faa75a80615c76292fa2a88 1389 Pfam PF04998 RNA polymerase Rpb1, domain 5 756 1303 1.7E-76 T 11-10-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMK58_10420 347f17d37faa75a80615c76292fa2a88 1389 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 10 1365 18.956 T 11-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMK58_10420 347f17d37faa75a80615c76292fa2a88 1389 Pfam PF05000 RNA polymerase Rpb1, domain 4 672 752 1.2E-16 T 11-10-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMK58_10420 347f17d37faa75a80615c76292fa2a88 1389 SMART SM00663 236 515 4.1E-185 T 11-10-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMK58_10420 347f17d37faa75a80615c76292fa2a88 1389 Pfam PF04983 RNA polymerase Rpb1, domain 3 490 643 1.1E-27 T 11-10-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMK58_10420 347f17d37faa75a80615c76292fa2a88 1389 Gene3D G3DSA:2.40.50.100 938 1012 3.3E-23 T 11-10-2018 AMK58_10420 347f17d37faa75a80615c76292fa2a88 1389 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 19 1351 0.0 T 11-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMK58_10420 347f17d37faa75a80615c76292fa2a88 1389 Gene3D G3DSA:1.10.150.390 1304 1366 7.6E-28 T 11-10-2018 AMK58_10420 347f17d37faa75a80615c76292fa2a88 1389 Pfam PF00623 RNA polymerase Rpb1, domain 2 345 393 6.4E-8 T 11-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMK58_10420 347f17d37faa75a80615c76292fa2a88 1389 Pfam PF00623 RNA polymerase Rpb1, domain 2 394 486 8.2E-27 T 11-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMK58_10420 347f17d37faa75a80615c76292fa2a88 1389 Gene3D G3DSA:1.10.1790.20 1123 1302 1.6E-67 T 11-10-2018 AMK58_10420 347f17d37faa75a80615c76292fa2a88 1389 Gene3D G3DSA:1.10.40.90 375 417 4.4E-22 T 11-10-2018 AMK58_10420 347f17d37faa75a80615c76292fa2a88 1389 Gene3D G3DSA:2.40.50.100 1013 1114 2.9E-27 T 11-10-2018 AMK58_10420 347f17d37faa75a80615c76292fa2a88 1389 Gene3D G3DSA:2.40.50.100 1139 1203 1.6E-67 T 11-10-2018 AMK58_10420 347f17d37faa75a80615c76292fa2a88 1389 Gene3D G3DSA:1.10.132.30 640 780 7.3E-64 T 11-10-2018 IPR038120 RNA polymerase Rpb1, funnel domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMK58_10420 347f17d37faa75a80615c76292fa2a88 1389 SUPERFAMILY SSF64484 15 1351 0.0 T 11-10-2018 AMK58_10420 347f17d37faa75a80615c76292fa2a88 1389 Pfam PF04997 RNA polymerase Rpb1, domain 1 15 343 1.5E-88 T 11-10-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMK58_20460 4478f92798772121c43133a2237a2679 354 SMART SM00382 32 220 1.5E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_20460 4478f92798772121c43133a2237a2679 354 Pfam PF00005 ABC transporter 23 171 3.8E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_20460 4478f92798772121c43133a2237a2679 354 Pfam PF09383 NIL domain 270 341 2.0E-22 T 11-10-2018 IPR018449 NIL domain AMK58_20460 4478f92798772121c43133a2237a2679 354 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_20460 4478f92798772121c43133a2237a2679 354 Gene3D G3DSA:3.40.50.300 1 234 5.6E-74 T 11-10-2018 AMK58_20460 4478f92798772121c43133a2237a2679 354 SMART SM00930 267 342 1.8E-23 T 11-10-2018 IPR018449 NIL domain AMK58_20460 4478f92798772121c43133a2237a2679 354 SUPERFAMILY SSF55021 250 345 2.17E-24 T 11-10-2018 AMK58_20460 4478f92798772121c43133a2237a2679 354 SUPERFAMILY SSF52540 1 242 2.73E-82 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_20460 4478f92798772121c43133a2237a2679 354 Gene3D G3DSA:3.30.70.260 235 345 7.7E-31 T 11-10-2018 AMK58_01670 c33c1c16f6e9005a596e3ee4f49ec7e6 514 Gene3D G3DSA:3.30.565.10 340 501 5.6E-33 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_01670 c33c1c16f6e9005a596e3ee4f49ec7e6 514 SMART SM00388 252 341 8.5E-17 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_01670 c33c1c16f6e9005a596e3ee4f49ec7e6 514 SUPERFAMILY SSF55874 331 498 5.63E-37 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_01670 c33c1c16f6e9005a596e3ee4f49ec7e6 514 Gene3D G3DSA:1.10.287.130 219 339 1.2E-23 T 11-10-2018 AMK58_01670 c33c1c16f6e9005a596e3ee4f49ec7e6 514 Pfam PF00512 His Kinase A (phospho-acceptor) domain 252 341 4.5E-15 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_01670 c33c1c16f6e9005a596e3ee4f49ec7e6 514 SUPERFAMILY SSF47384 236 342 6.08E-17 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_01670 c33c1c16f6e9005a596e3ee4f49ec7e6 514 SMART SM00387 387 500 9.7E-34 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_01670 c33c1c16f6e9005a596e3ee4f49ec7e6 514 PRINTS PR00344 Bacterial sensor protein C-terminal signature 443 453 1.2E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_01670 c33c1c16f6e9005a596e3ee4f49ec7e6 514 PRINTS PR00344 Bacterial sensor protein C-terminal signature 460 478 1.2E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_01670 c33c1c16f6e9005a596e3ee4f49ec7e6 514 PRINTS PR00344 Bacterial sensor protein C-terminal signature 425 439 1.2E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_01670 c33c1c16f6e9005a596e3ee4f49ec7e6 514 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 388 499 3.5E-21 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_14040 bb06e7f09712f5280499bfab8f0fe790 461 Gene3D G3DSA:1.10.287.470 244 312 9.1E-18 T 11-10-2018 AMK58_14040 bb06e7f09712f5280499bfab8f0fe790 461 Pfam PF13437 HlyD family secretion protein 313 415 4.1E-18 T 11-10-2018 AMK58_14040 bb06e7f09712f5280499bfab8f0fe790 461 Gene3D G3DSA:2.40.30.170 73 83 5.8E-9 T 11-10-2018 AMK58_14040 bb06e7f09712f5280499bfab8f0fe790 461 SUPERFAMILY SSF111369 254 378 5.89E-6 T 11-10-2018 AMK58_14040 bb06e7f09712f5280499bfab8f0fe790 461 Gene3D G3DSA:1.10.287.470 119 210 5.8E-9 T 11-10-2018 AMK58_14040 bb06e7f09712f5280499bfab8f0fe790 461 Gene3D G3DSA:2.40.50.100 243 349 9.1E-18 T 11-10-2018 AMK58_14040 bb06e7f09712f5280499bfab8f0fe790 461 Gene3D G3DSA:2.40.50.100 84 118 5.8E-9 T 11-10-2018 AMK58_14040 bb06e7f09712f5280499bfab8f0fe790 461 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 48 461 3.7E-113 T 11-10-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 AMK58_14040 bb06e7f09712f5280499bfab8f0fe790 461 Pfam PF13533 Biotin-lipoyl like 94 129 4.5E-6 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain AMK58_14040 bb06e7f09712f5280499bfab8f0fe790 461 SUPERFAMILY SSF111369 94 148 4.71E-5 T 11-10-2018 AMK58_14040 bb06e7f09712f5280499bfab8f0fe790 461 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 382 405 5.3E-43 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMK58_14040 bb06e7f09712f5280499bfab8f0fe790 461 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 55 78 5.3E-43 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMK58_14040 bb06e7f09712f5280499bfab8f0fe790 461 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 425 440 5.3E-43 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMK58_14040 bb06e7f09712f5280499bfab8f0fe790 461 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 325 346 5.3E-43 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMK58_14040 bb06e7f09712f5280499bfab8f0fe790 461 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 358 382 5.3E-43 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMK58_14040 bb06e7f09712f5280499bfab8f0fe790 461 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 97 117 5.3E-43 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMK58_14040 bb06e7f09712f5280499bfab8f0fe790 461 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 440 460 5.3E-43 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMK58_14040 bb06e7f09712f5280499bfab8f0fe790 461 Gene3D G3DSA:2.40.30.170 350 412 9.1E-18 T 11-10-2018 AMK58_17165 5f688c3ed3bfd26547ac6ed5ad75d944 885 Gene3D G3DSA:1.25.50.10 557 882 4.2E-134 T 11-10-2018 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily AMK58_17165 5f688c3ed3bfd26547ac6ed5ad75d944 885 TIGRFAM TIGR02414 pepN_proteo: aminopeptidase N 13 881 0.0 T 11-10-2018 IPR012779 Peptidase M1, alanyl aminopeptidase GO:0008270 AMK58_17165 5f688c3ed3bfd26547ac6ed5ad75d944 885 Gene3D G3DSA:2.60.40.1840 451 555 1.3E-35 T 11-10-2018 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily AMK58_17165 5f688c3ed3bfd26547ac6ed5ad75d944 885 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 265 275 2.3E-8 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMK58_17165 5f688c3ed3bfd26547ac6ed5ad75d944 885 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 301 316 2.3E-8 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMK58_17165 5f688c3ed3bfd26547ac6ed5ad75d944 885 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 320 332 2.3E-8 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMK58_17165 5f688c3ed3bfd26547ac6ed5ad75d944 885 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 133 148 2.3E-8 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMK58_17165 5f688c3ed3bfd26547ac6ed5ad75d944 885 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 183 198 2.3E-8 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMK58_17165 5f688c3ed3bfd26547ac6ed5ad75d944 885 SUPERFAMILY SSF55486 211 457 5.57E-77 T 11-10-2018 AMK58_17165 5f688c3ed3bfd26547ac6ed5ad75d944 885 Pfam PF01433 Peptidase family M1 domain 215 446 5.7E-57 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMK58_17165 5f688c3ed3bfd26547ac6ed5ad75d944 885 SUPERFAMILY SSF63737 7 199 1.96E-42 T 11-10-2018 AMK58_17165 5f688c3ed3bfd26547ac6ed5ad75d944 885 Pfam PF11940 Domain of unknown function (DUF3458) Ig-like fold 451 555 7.3E-31 T 11-10-2018 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold AMK58_17165 5f688c3ed3bfd26547ac6ed5ad75d944 885 Gene3D G3DSA:1.10.1740.60 203 286 5.2E-40 T 11-10-2018 AMK58_17165 5f688c3ed3bfd26547ac6ed5ad75d944 885 Gene3D G3DSA:2.60.40.1730 16 201 6.0E-75 T 11-10-2018 AMK58_17165 5f688c3ed3bfd26547ac6ed5ad75d944 885 Gene3D G3DSA:1.10.390.10 287 450 3.7E-66 T 11-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily AMK58_17165 5f688c3ed3bfd26547ac6ed5ad75d944 885 Pfam PF17432 Domain of unknown function (DUF3458_C) ARM repeats 560 882 7.2E-133 T 11-10-2018 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal AMK58_02650 f3aa016ba4ffd11df4983a56630540a9 292 SUPERFAMILY SSF48179 168 290 3.74E-34 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMK58_02650 f3aa016ba4ffd11df4983a56630540a9 292 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 170 289 1.2E-31 T 11-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 AMK58_02650 f3aa016ba4ffd11df4983a56630540a9 292 Gene3D G3DSA:3.40.50.720 8 167 6.5E-53 T 11-10-2018 AMK58_02650 f3aa016ba4ffd11df4983a56630540a9 292 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 14 27 - T 11-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 AMK58_02650 f3aa016ba4ffd11df4983a56630540a9 292 Gene3D G3DSA:1.10.1040.10 168 292 5.2E-36 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMK58_02650 f3aa016ba4ffd11df4983a56630540a9 292 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 11 167 8.7E-50 T 11-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 AMK58_02650 f3aa016ba4ffd11df4983a56630540a9 292 SUPERFAMILY SSF51735 11 168 2.51E-46 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_02650 f3aa016ba4ffd11df4983a56630540a9 292 PIRSF PIRSF000103 7 292 5.7E-70 T 11-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 AMK58_25355 b4bda17ee380943c1cf4928c91862aec 246 Pfam PF13144 Chaperone for flagella basal body P-ring formation 92 230 1.3E-32 T 11-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal AMK58_25355 b4bda17ee380943c1cf4928c91862aec 246 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 97 230 7.1E-35 T 11-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal AMK58_25355 b4bda17ee380943c1cf4928c91862aec 246 Gene3D G3DSA:2.30.30.760 174 232 1.5E-9 T 11-10-2018 AMK58_25355 b4bda17ee380943c1cf4928c91862aec 246 SMART SM00858 107 169 7.4E-6 T 11-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 AMK58_07730 e0d543ead7197345c613161a9824119e 218 SUPERFAMILY SSF53335 2 208 5.88E-41 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_07730 e0d543ead7197345c613161a9824119e 218 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 15 195 2.6E-39 T 11-10-2018 AMK58_07730 e0d543ead7197345c613161a9824119e 218 Gene3D G3DSA:3.40.50.150 3 212 6.1E-51 T 11-10-2018 AMK58_20305 fe0802f0d9567498382237e72cc64bae 485 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 283 294 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AMK58_20305 fe0802f0d9567498382237e72cc64bae 485 Gene3D G3DSA:3.40.309.10 259 448 1.4E-187 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMK58_20305 fe0802f0d9567498382237e72cc64bae 485 SUPERFAMILY SSF53720 6 483 9.69E-178 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMK58_20305 fe0802f0d9567498382237e72cc64bae 485 Gene3D G3DSA:3.40.605.10 25 473 1.4E-187 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMK58_20305 fe0802f0d9567498382237e72cc64bae 485 Pfam PF00171 Aldehyde dehydrogenase family 19 478 5.4E-173 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMK58_20305 fe0802f0d9567498382237e72cc64bae 485 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 255 262 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AMK58_20305 fe0802f0d9567498382237e72cc64bae 485 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 30 477 1.8E-226 T 11-10-2018 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 AMK58_01860 b4f62f64b4bcfc087ac78867c455ff6a 688 Pfam PF02384 N-6 DNA Methylase 548 643 2.8E-5 T 11-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 AMK58_01860 b4f62f64b4bcfc087ac78867c455ff6a 688 Pfam PF02384 N-6 DNA Methylase 311 488 3.9E-16 T 11-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 AMK58_01860 b4f62f64b4bcfc087ac78867c455ff6a 688 SUPERFAMILY SSF53335 265 685 1.75E-53 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_01860 b4f62f64b4bcfc087ac78867c455ff6a 688 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 467 479 2.3E-17 T 11-10-2018 AMK58_01860 b4f62f64b4bcfc087ac78867c455ff6a 688 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 546 570 2.3E-17 T 11-10-2018 AMK58_01860 b4f62f64b4bcfc087ac78867c455ff6a 688 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 333 349 2.3E-17 T 11-10-2018 AMK58_01860 b4f62f64b4bcfc087ac78867c455ff6a 688 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 375 389 2.3E-17 T 11-10-2018 AMK58_12720 224d3d759ef00b2d59423214d47f14c7 896 Pfam PF00330 Aconitase family (aconitate hydratase) 79 565 6.5E-188 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMK58_12720 224d3d759ef00b2d59423214d47f14c7 896 Gene3D G3DSA:3.30.499.20 9 378 6.9E-163 T 11-10-2018 AMK58_12720 224d3d759ef00b2d59423214d47f14c7 896 SUPERFAMILY SSF52016 633 894 4.12E-90 T 11-10-2018 AMK58_12720 224d3d759ef00b2d59423214d47f14c7 896 Gene3D G3DSA:1.10.1440.20 594 654 4.1E-16 T 11-10-2018 AMK58_12720 224d3d759ef00b2d59423214d47f14c7 896 SUPERFAMILY SSF53732 8 629 2.75E-230 T 11-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 AMK58_12720 224d3d759ef00b2d59423214d47f14c7 896 Gene3D G3DSA:3.30.499.10 379 593 4.2E-98 T 11-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 AMK58_12720 224d3d759ef00b2d59423214d47f14c7 896 PRINTS PR00415 Aconitase family signature 496 509 1.9E-44 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMK58_12720 224d3d759ef00b2d59423214d47f14c7 896 PRINTS PR00415 Aconitase family signature 378 392 1.9E-44 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMK58_12720 224d3d759ef00b2d59423214d47f14c7 896 PRINTS PR00415 Aconitase family signature 284 297 1.9E-44 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMK58_12720 224d3d759ef00b2d59423214d47f14c7 896 PRINTS PR00415 Aconitase family signature 298 311 1.9E-44 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMK58_12720 224d3d759ef00b2d59423214d47f14c7 896 PRINTS PR00415 Aconitase family signature 174 182 1.9E-44 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMK58_12720 224d3d759ef00b2d59423214d47f14c7 896 PRINTS PR00415 Aconitase family signature 208 221 1.9E-44 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMK58_12720 224d3d759ef00b2d59423214d47f14c7 896 PRINTS PR00415 Aconitase family signature 222 237 1.9E-44 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMK58_12720 224d3d759ef00b2d59423214d47f14c7 896 PRINTS PR00415 Aconitase family signature 434 445 1.9E-44 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMK58_12720 224d3d759ef00b2d59423214d47f14c7 896 PRINTS PR00415 Aconitase family signature 150 163 1.9E-44 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMK58_12720 224d3d759ef00b2d59423214d47f14c7 896 ProSitePatterns PS01244 Aconitase family signature 2. 496 509 - T 11-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AMK58_12720 224d3d759ef00b2d59423214d47f14c7 896 ProSitePatterns PS00450 Aconitase family signature 1. 430 446 - T 11-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AMK58_12720 224d3d759ef00b2d59423214d47f14c7 896 Pfam PF00694 Aconitase C-terminal domain 696 822 1.1E-46 T 11-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 AMK58_12720 224d3d759ef00b2d59423214d47f14c7 896 Gene3D G3DSA:3.20.19.10 657 896 2.5E-106 T 11-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 AMK58_12720 224d3d759ef00b2d59423214d47f14c7 896 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 22 894 0.0 T 11-10-2018 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-917937 AMK58_24020 30436cfe575cd21afef8786bf2b24e78 246 Pfam PF00106 short chain dehydrogenase 4 197 1.5E-66 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_24020 30436cfe575cd21afef8786bf2b24e78 246 TIGRFAM TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase 4 244 9.5E-124 T 11-10-2018 IPR011283 Acetoacetyl-CoA reductase GO:0005737|GO:0018454|GO:0042619|GO:0055114 KEGG: 00630+1.1.1.36|KEGG: 00650+1.1.1.36|MetaCyc: PWY-5676|MetaCyc: PWY-5741|MetaCyc: PWY-7216|MetaCyc: PWY-7948 AMK58_24020 30436cfe575cd21afef8786bf2b24e78 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 5.4E-49 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_24020 30436cfe575cd21afef8786bf2b24e78 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 207 227 5.4E-49 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_24020 30436cfe575cd21afef8786bf2b24e78 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 5.4E-49 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_24020 30436cfe575cd21afef8786bf2b24e78 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 5.4E-49 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_24020 30436cfe575cd21afef8786bf2b24e78 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 5.4E-49 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_24020 30436cfe575cd21afef8786bf2b24e78 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 5.4E-49 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_24020 30436cfe575cd21afef8786bf2b24e78 246 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4 184 8.3E-5 T 11-10-2018 AMK58_24020 30436cfe575cd21afef8786bf2b24e78 246 Gene3D G3DSA:3.40.50.720 1 245 8.4E-84 T 11-10-2018 AMK58_24020 30436cfe575cd21afef8786bf2b24e78 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 2.1E-17 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_24020 30436cfe575cd21afef8786bf2b24e78 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 2.1E-17 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_24020 30436cfe575cd21afef8786bf2b24e78 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 2.1E-17 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_24020 30436cfe575cd21afef8786bf2b24e78 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMK58_24020 30436cfe575cd21afef8786bf2b24e78 246 SUPERFAMILY SSF51735 3 244 3.98E-83 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_09650 efa9fc0aeb1aa88d4beecf7406415f1c 282 PIRSF PIRSF000094 5 263 1.2E-112 T 11-10-2018 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AMK58_09650 efa9fc0aeb1aa88d4beecf7406415f1c 282 Gene3D G3DSA:3.40.50.720 12 204 1.2E-42 T 11-10-2018 AMK58_09650 efa9fc0aeb1aa88d4beecf7406415f1c 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 5.9E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_09650 efa9fc0aeb1aa88d4beecf7406415f1c 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 136 152 5.9E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_09650 efa9fc0aeb1aa88d4beecf7406415f1c 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 87 98 5.9E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_09650 efa9fc0aeb1aa88d4beecf7406415f1c 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 5.9E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_09650 efa9fc0aeb1aa88d4beecf7406415f1c 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 5.9E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_09650 efa9fc0aeb1aa88d4beecf7406415f1c 282 SUPERFAMILY SSF51735 9 258 1.37E-69 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_09650 efa9fc0aeb1aa88d4beecf7406415f1c 282 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 255 1.6E-90 T 11-10-2018 AMK58_09650 efa9fc0aeb1aa88d4beecf7406415f1c 282 Gene3D G3DSA:1.10.8.400 206 261 9.9E-16 T 11-10-2018 AMK58_11135 7d260f34afd7199dadbdb86f4a0fb5c7 241 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 188 5.7E-5 T 11-10-2018 AMK58_11135 7d260f34afd7199dadbdb86f4a0fb5c7 241 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 9 240 6.5E-56 T 11-10-2018 AMK58_11135 7d260f34afd7199dadbdb86f4a0fb5c7 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 1.2E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_11135 7d260f34afd7199dadbdb86f4a0fb5c7 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 1.2E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_11135 7d260f34afd7199dadbdb86f4a0fb5c7 241 SUPERFAMILY SSF51735 2 240 4.26E-72 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_11135 7d260f34afd7199dadbdb86f4a0fb5c7 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 1.1E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_11135 7d260f34afd7199dadbdb86f4a0fb5c7 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 204 224 1.1E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_11135 7d260f34afd7199dadbdb86f4a0fb5c7 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 1.1E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_11135 7d260f34afd7199dadbdb86f4a0fb5c7 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 1.1E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_11135 7d260f34afd7199dadbdb86f4a0fb5c7 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 1.1E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_11135 7d260f34afd7199dadbdb86f4a0fb5c7 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 1.1E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_11135 7d260f34afd7199dadbdb86f4a0fb5c7 241 Gene3D G3DSA:3.40.50.720 2 241 3.9E-75 T 11-10-2018 AMK58_11135 7d260f34afd7199dadbdb86f4a0fb5c7 241 TIGRFAM TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase 5 241 4.6E-120 T 11-10-2018 IPR011285 3-oxoacyl-(acyl-carrier-protein) reductase, putative KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AMK58_13345 9ae1725a0e60505be4c588e0bb11a59e 132 SUPERFAMILY SSF48295 11 62 1.41E-10 T 11-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMK58_13345 9ae1725a0e60505be4c588e0bb11a59e 132 Pfam PF01527 Transposase 13 79 5.7E-17 T 11-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMK58_26495 4c5e22a85b9ec9a53ae0703d45783256 760 Pfam PF01228 Glycine radical 635 741 5.1E-43 T 11-10-2018 IPR001150 Glycine radical domain GO:0003824 AMK58_26495 4c5e22a85b9ec9a53ae0703d45783256 760 Pfam PF02901 Pyruvate formate lyase-like 34 619 8.0E-198 T 11-10-2018 IPR004184 Pyruvate formate lyase domain GO:0003824 AMK58_26495 4c5e22a85b9ec9a53ae0703d45783256 760 PIRSF PIRSF000379 17 760 0.0 T 11-10-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 AMK58_26495 4c5e22a85b9ec9a53ae0703d45783256 760 TIGRFAM TIGR01255 pyr_form_ly_1: formate acetyltransferase 21 757 0.0 T 11-10-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 AMK58_26495 4c5e22a85b9ec9a53ae0703d45783256 760 SUPERFAMILY SSF51998 15 758 1.42E-278 T 11-10-2018 AMK58_26495 4c5e22a85b9ec9a53ae0703d45783256 760 ProSitePatterns PS00850 Glycine radical domain signature. 730 738 - T 11-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site AMK58_26495 4c5e22a85b9ec9a53ae0703d45783256 760 Gene3D G3DSA:3.20.70.20 12 759 4.0E-290 T 11-10-2018 AMK58_11790 2005a2cf4f93498d5de83f924b37b378 319 SUPERFAMILY SSF47823 25 112 9.22E-11 T 11-10-2018 AMK58_11790 2005a2cf4f93498d5de83f924b37b378 319 SUPERFAMILY SSF56349 126 313 3.24E-48 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMK58_11790 2005a2cf4f93498d5de83f924b37b378 319 Gene3D G3DSA:1.10.443.10 130 309 2.5E-49 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMK58_11790 2005a2cf4f93498d5de83f924b37b378 319 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 19 315 50.731 T 11-10-2018 IPR023009 Tyrosine recombinase XerC/XerD AMK58_11790 2005a2cf4f93498d5de83f924b37b378 319 Pfam PF00589 Phage integrase family 136 300 1.3E-35 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMK58_11790 2005a2cf4f93498d5de83f924b37b378 319 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 24 107 1.7E-13 T 11-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 AMK58_11790 2005a2cf4f93498d5de83f924b37b378 319 Gene3D G3DSA:1.10.150.130 18 116 2.6E-16 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal AMK58_26570 b0468e657395456cb7d6b8d2394b9be2 352 SUPERFAMILY SSF51735 148 351 1.84E-52 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_26570 b0468e657395456cb7d6b8d2394b9be2 352 PIRSF PIRSF000188 2 352 2.2E-145 T 11-10-2018 IPR016211 Glutamate/phenylalanine/leucine/valine dehydrogenase, bacterial/archaeal GO:0016639|GO:0055114 AMK58_26570 b0468e657395456cb7d6b8d2394b9be2 352 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 14 131 6.2E-26 T 11-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AMK58_26570 b0468e657395456cb7d6b8d2394b9be2 352 Gene3D G3DSA:3.40.50.10860 11 348 1.5E-141 T 11-10-2018 AMK58_26570 b0468e657395456cb7d6b8d2394b9be2 352 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 74 87 - T 11-10-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AMK58_26570 b0468e657395456cb7d6b8d2394b9be2 352 Gene3D G3DSA:3.40.50.720 134 341 1.5E-141 T 11-10-2018 AMK58_26570 b0468e657395456cb7d6b8d2394b9be2 352 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 181 201 6.6E-17 T 11-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AMK58_26570 b0468e657395456cb7d6b8d2394b9be2 352 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 66 80 6.6E-17 T 11-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AMK58_26570 b0468e657395456cb7d6b8d2394b9be2 352 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 291 302 6.6E-17 T 11-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AMK58_26570 b0468e657395456cb7d6b8d2394b9be2 352 SMART SM00839 149 352 3.8E-75 T 11-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AMK58_26570 b0468e657395456cb7d6b8d2394b9be2 352 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 223 304 8.2E-9 T 11-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AMK58_26570 b0468e657395456cb7d6b8d2394b9be2 352 SUPERFAMILY SSF53223 4 136 3.13E-44 T 11-10-2018 AMK58_13675 cd67d965dee5e23754c1716c69d513b1 416 Gene3D G3DSA:3.50.50.60 15 350 5.8E-99 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_13675 cd67d965dee5e23754c1716c69d513b1 416 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 15 402 1.1E-129 T 11-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 AMK58_13675 cd67d965dee5e23754c1716c69d513b1 416 Pfam PF01494 FAD binding domain 14 326 7.3E-33 T 11-10-2018 IPR002938 FAD-binding domain GO:0071949 AMK58_13675 cd67d965dee5e23754c1716c69d513b1 416 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 292 307 1.3E-21 T 11-10-2018 AMK58_13675 cd67d965dee5e23754c1716c69d513b1 416 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 307 323 1.3E-21 T 11-10-2018 AMK58_13675 cd67d965dee5e23754c1716c69d513b1 416 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 15 37 1.3E-21 T 11-10-2018 AMK58_13675 cd67d965dee5e23754c1716c69d513b1 416 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 168 183 1.3E-21 T 11-10-2018 AMK58_13675 cd67d965dee5e23754c1716c69d513b1 416 SUPERFAMILY SSF51905 14 398 5.99E-63 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_13675 cd67d965dee5e23754c1716c69d513b1 416 Gene3D G3DSA:3.30.9.50 88 281 5.8E-99 T 11-10-2018 AMK58_13675 cd67d965dee5e23754c1716c69d513b1 416 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 306 319 - T 11-10-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 AMK58_17760 2667e938052e33028904122cc9c5b1b1 695 SUPERFAMILY SSF46626 347 695 5.07E-5 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_17760 2667e938052e33028904122cc9c5b1b1 695 SUPERFAMILY SSF46626 346 695 1.88E-12 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_06955 40fc3d1954bf545cd9921f7024ead926 302 TIGRFAM TIGR01505 tartro_sem_red: 2-hydroxy-3-oxopropionate reductase 3 291 3.8E-127 T 11-10-2018 IPR006398 2-hydroxy-3-oxopropionate reductase GO:0008679|GO:0046487|GO:0055114 KEGG: 00630+1.1.1.60 AMK58_06955 40fc3d1954bf545cd9921f7024ead926 302 SUPERFAMILY SSF51735 1 160 1.75E-48 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_06955 40fc3d1954bf545cd9921f7024ead926 302 Gene3D G3DSA:3.40.50.720 1 158 6.4E-58 T 11-10-2018 AMK58_06955 40fc3d1954bf545cd9921f7024ead926 302 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 160 1.1E-52 T 11-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 AMK58_06955 40fc3d1954bf545cd9921f7024ead926 302 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 163 283 9.3E-39 T 11-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 AMK58_06955 40fc3d1954bf545cd9921f7024ead926 302 Gene3D G3DSA:1.10.1040.10 159 292 1.8E-38 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMK58_06955 40fc3d1954bf545cd9921f7024ead926 302 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 5 18 - T 11-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 AMK58_06955 40fc3d1954bf545cd9921f7024ead926 302 SUPERFAMILY SSF48179 162 291 5.33E-36 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMK58_06955 40fc3d1954bf545cd9921f7024ead926 302 PIRSF PIRSF000103 1 292 2.8E-74 T 11-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 AMK58_11410 53d73d01db5d8a4ae062059cfa6c99ad 254 ProSitePatterns PS01057 SAICAR synthetase signature 1. 86 100 - T 11-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMK58_11410 53d73d01db5d8a4ae062059cfa6c99ad 254 ProSitePatterns PS01058 SAICAR synthetase signature 2. 173 181 - T 11-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMK58_11410 53d73d01db5d8a4ae062059cfa6c99ad 254 Pfam PF01259 SAICAR synthetase 7 235 1.4E-59 T 11-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMK58_11410 53d73d01db5d8a4ae062059cfa6c99ad 254 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 4 238 31.44 T 11-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMK58_11410 53d73d01db5d8a4ae062059cfa6c99ad 254 Gene3D G3DSA:3.30.470.20 85 224 2.8E-94 T 11-10-2018 AMK58_11410 53d73d01db5d8a4ae062059cfa6c99ad 254 Gene3D G3DSA:3.30.200.20 7 235 2.8E-94 T 11-10-2018 AMK58_11410 53d73d01db5d8a4ae062059cfa6c99ad 254 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 4 237 1.0E-62 T 11-10-2018 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 AMK58_11410 53d73d01db5d8a4ae062059cfa6c99ad 254 SUPERFAMILY SSF56104 4 236 1.01E-76 T 11-10-2018 AMK58_17965 bdad45856dc2bcf67db2173d144cbc86 125 Pfam PF00072 Response regulator receiver domain 10 117 1.7E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_17965 bdad45856dc2bcf67db2173d144cbc86 125 Gene3D G3DSA:3.40.50.2300 4 125 4.5E-28 T 11-10-2018 AMK58_17965 bdad45856dc2bcf67db2173d144cbc86 125 SUPERFAMILY SSF52172 7 122 3.98E-30 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_17965 bdad45856dc2bcf67db2173d144cbc86 125 SMART SM00448 8 117 7.2E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_11275 40f6462b8039d7ab6557c41cddf05462 391 SUPERFAMILY SSF55486 119 216 2.88E-5 T 11-10-2018 AMK58_11275 40f6462b8039d7ab6557c41cddf05462 391 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 303 321 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_11275 40f6462b8039d7ab6557c41cddf05462 391 Gene3D G3DSA:2.150.10.10 229 275 1.0E-12 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_11275 40f6462b8039d7ab6557c41cddf05462 391 PRINTS PR00313 NodO calcium binding signature 289 297 4.4E-12 T 11-10-2018 AMK58_11275 40f6462b8039d7ab6557c41cddf05462 391 PRINTS PR00313 NodO calcium binding signature 262 270 4.4E-12 T 11-10-2018 AMK58_11275 40f6462b8039d7ab6557c41cddf05462 391 PRINTS PR00313 NodO calcium binding signature 241 252 4.4E-12 T 11-10-2018 AMK58_11275 40f6462b8039d7ab6557c41cddf05462 391 PRINTS PR00313 NodO calcium binding signature 316 325 4.4E-12 T 11-10-2018 AMK58_11275 40f6462b8039d7ab6557c41cddf05462 391 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 270 287 9.4E-4 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_11275 40f6462b8039d7ab6557c41cddf05462 391 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 235 251 0.0082 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_11275 40f6462b8039d7ab6557c41cddf05462 391 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 253 269 0.0012 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_11275 40f6462b8039d7ab6557c41cddf05462 391 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 288 305 0.0027 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_11275 40f6462b8039d7ab6557c41cddf05462 391 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 306 322 5.1E-4 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_11275 40f6462b8039d7ab6557c41cddf05462 391 Gene3D G3DSA:2.150.10.10 276 389 1.7E-27 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_11275 40f6462b8039d7ab6557c41cddf05462 391 SUPERFAMILY SSF51120 229 377 1.72E-31 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_20955 91969dfc0345a8975bafa5f108904aad 619 SUPERFAMILY SSF52540 356 602 1.16E-92 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_20955 91969dfc0345a8975bafa5f108904aad 619 Gene3D G3DSA:3.40.50.300 358 611 1.9E-95 T 11-10-2018 AMK58_20955 91969dfc0345a8975bafa5f108904aad 619 ProSitePatterns PS00211 ABC transporters family signature. 504 518 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_20955 91969dfc0345a8975bafa5f108904aad 619 SUPERFAMILY SSF90123 30 355 4.58E-63 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMK58_20955 91969dfc0345a8975bafa5f108904aad 619 Pfam PF00005 ABC transporter 383 532 6.8E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_20955 91969dfc0345a8975bafa5f108904aad 619 Gene3D G3DSA:1.20.1560.10 33 355 2.1E-126 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMK58_20955 91969dfc0345a8975bafa5f108904aad 619 Pfam PF00664 ABC transporter transmembrane region 47 321 3.7E-40 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMK58_20955 91969dfc0345a8975bafa5f108904aad 619 SMART SM00382 392 578 6.0E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_12595 d2b018580ff5207af338fb7916619457 318 Gene3D G3DSA:3.30.1780.10 6 309 2.0E-92 T 11-10-2018 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 AMK58_12595 d2b018580ff5207af338fb7916619457 318 PIRSF PIRSF001439 3 317 1.5E-78 T 11-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 AMK58_12595 d2b018580ff5207af338fb7916619457 318 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 16 311 5.4E-73 T 11-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 AMK58_12595 d2b018580ff5207af338fb7916619457 318 SUPERFAMILY SSF51735 1 312 4.07E-94 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_12595 d2b018580ff5207af338fb7916619457 318 Gene3D G3DSA:3.40.50.720 122 295 2.0E-92 T 11-10-2018 AMK58_18725 d61e9b68ebd5b0e6e8a8ff700527e1ce 363 Gene3D G3DSA:2.40.50.100 293 359 2.6E-11 T 11-10-2018 AMK58_18725 d61e9b68ebd5b0e6e8a8ff700527e1ce 363 SUPERFAMILY SSF52540 10 226 2.72E-57 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_18725 d61e9b68ebd5b0e6e8a8ff700527e1ce 363 SUPERFAMILY SSF50331 238 358 4.37E-18 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMK58_18725 d61e9b68ebd5b0e6e8a8ff700527e1ce 363 TIGRFAM TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein 3 358 3.0E-132 T 11-10-2018 IPR011868 Molybdate ABC transporter, ATP-binding protein GO:0005524|GO:0015098|GO:0015689|GO:0016020 AMK58_18725 d61e9b68ebd5b0e6e8a8ff700527e1ce 363 Gene3D G3DSA:3.40.50.300 3 240 1.9E-55 T 11-10-2018 AMK58_18725 d61e9b68ebd5b0e6e8a8ff700527e1ce 363 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_18725 d61e9b68ebd5b0e6e8a8ff700527e1ce 363 Pfam PF00005 ABC transporter 21 160 3.1E-24 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_18725 d61e9b68ebd5b0e6e8a8ff700527e1ce 363 SMART SM00382 24 210 4.1E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_18725 d61e9b68ebd5b0e6e8a8ff700527e1ce 363 Pfam PF03459 TOBE domain 293 357 9.9E-13 T 11-10-2018 IPR005116 Transport-associated OB, type 1 AMK58_24350 3f717fd1526f9d437b7e0937eb9c7bdc 308 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_24350 3f717fd1526f9d437b7e0937eb9c7bdc 308 Pfam PF00005 ABC transporter 21 163 6.8E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_24350 3f717fd1526f9d437b7e0937eb9c7bdc 308 Gene3D G3DSA:3.40.50.300 1 236 1.1E-63 T 11-10-2018 AMK58_24350 3f717fd1526f9d437b7e0937eb9c7bdc 308 SUPERFAMILY SSF52540 2 229 4.34E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_24350 3f717fd1526f9d437b7e0937eb9c7bdc 308 SMART SM00382 30 218 3.9E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_15970 0f65ed14ebfd89a7790e905fa7a4089c 353 Pfam PF01594 AI-2E family transporter 14 334 1.5E-66 T 11-10-2018 IPR002549 Transmembrane protein TqsA-like AMK58_12060 5e3f7e1ebbf762008ffddcadea279f84 321 SUPERFAMILY SSF161098 93 298 8.24E-19 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_12060 5e3f7e1ebbf762008ffddcadea279f84 321 Gene3D G3DSA:1.10.3720.10 86 308 9.6E-26 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_12060 5e3f7e1ebbf762008ffddcadea279f84 321 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 315 6.4E-44 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_09965 2f1c077a83e8701465e31808235fce41 234 SUPERFAMILY SSF48097 117 199 2.5E-7 T 11-10-2018 IPR036305 RGS domain superfamily AMK58_09965 2f1c077a83e8701465e31808235fce41 234 Gene3D G3DSA:1.20.58.1850 111 216 2.9E-5 T 11-10-2018 AMK58_01185 5d87333edacaf20e224b7697f6f4ac11 145 SMART SM00363 23 86 5.3E-10 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_01185 5d87333edacaf20e224b7697f6f4ac11 145 SUPERFAMILY SSF55174 22 107 1.83E-23 T 11-10-2018 AMK58_01185 5d87333edacaf20e224b7697f6f4ac11 145 Gene3D G3DSA:3.10.290.10 17 118 4.2E-34 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AMK58_01185 5d87333edacaf20e224b7697f6f4ac11 145 Pfam PF01479 S4 domain 24 70 2.3E-11 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_14305 1c5a2923a2e10d24fca8bc7337cdee6f 827 SMART SM00387 41 196 4.0E-26 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_14305 1c5a2923a2e10d24fca8bc7337cdee6f 827 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 15 827 6.7E-293 T 11-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMK58_14305 1c5a2923a2e10d24fca8bc7337cdee6f 827 Gene3D G3DSA:3.30.565.10 12 242 4.5E-83 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_14305 1c5a2923a2e10d24fca8bc7337cdee6f 827 PRINTS PR00418 DNA topoisomerase II family signature 447 461 2.0E-70 T 11-10-2018 AMK58_14305 1c5a2923a2e10d24fca8bc7337cdee6f 827 PRINTS PR00418 DNA topoisomerase II family signature 514 530 2.0E-70 T 11-10-2018 AMK58_14305 1c5a2923a2e10d24fca8bc7337cdee6f 827 PRINTS PR00418 DNA topoisomerase II family signature 759 775 2.0E-70 T 11-10-2018 AMK58_14305 1c5a2923a2e10d24fca8bc7337cdee6f 827 PRINTS PR00418 DNA topoisomerase II family signature 295 308 2.0E-70 T 11-10-2018 AMK58_14305 1c5a2923a2e10d24fca8bc7337cdee6f 827 PRINTS PR00418 DNA topoisomerase II family signature 45 60 2.0E-70 T 11-10-2018 AMK58_14305 1c5a2923a2e10d24fca8bc7337cdee6f 827 PRINTS PR00418 DNA topoisomerase II family signature 80 93 2.0E-70 T 11-10-2018 AMK58_14305 1c5a2923a2e10d24fca8bc7337cdee6f 827 PRINTS PR00418 DNA topoisomerase II family signature 532 549 2.0E-70 T 11-10-2018 AMK58_14305 1c5a2923a2e10d24fca8bc7337cdee6f 827 PRINTS PR00418 DNA topoisomerase II family signature 123 137 2.0E-70 T 11-10-2018 AMK58_14305 1c5a2923a2e10d24fca8bc7337cdee6f 827 PRINTS PR00418 DNA topoisomerase II family signature 552 564 2.0E-70 T 11-10-2018 AMK58_14305 1c5a2923a2e10d24fca8bc7337cdee6f 827 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 42 192 4.0E-21 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_14305 1c5a2923a2e10d24fca8bc7337cdee6f 827 Pfam PF00204 DNA gyrase B 243 417 1.6E-57 T 11-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMK58_14305 1c5a2923a2e10d24fca8bc7337cdee6f 827 SMART SM00433 45 820 9.7E-252 T 11-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMK58_14305 1c5a2923a2e10d24fca8bc7337cdee6f 827 Gene3D G3DSA:3.40.50.670 722 826 5.9E-24 T 11-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMK58_14305 1c5a2923a2e10d24fca8bc7337cdee6f 827 Pfam PF01751 Toprim domain 446 557 5.3E-18 T 11-10-2018 IPR006171 TOPRIM domain AMK58_14305 1c5a2923a2e10d24fca8bc7337cdee6f 827 Gene3D G3DSA:3.40.50.670 425 597 8.1E-72 T 11-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMK58_14305 1c5a2923a2e10d24fca8bc7337cdee6f 827 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 755 816 3.3E-29 T 11-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMK58_14305 1c5a2923a2e10d24fca8bc7337cdee6f 827 SUPERFAMILY SSF54211 243 418 9.1E-54 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMK58_14305 1c5a2923a2e10d24fca8bc7337cdee6f 827 SUPERFAMILY SSF56719 421 818 4.71E-85 T 11-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AMK58_14305 1c5a2923a2e10d24fca8bc7337cdee6f 827 Gene3D G3DSA:3.30.230.10 243 419 1.1E-68 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMK58_14305 1c5a2923a2e10d24fca8bc7337cdee6f 827 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 12 827 98.167 T 11-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMK58_14305 1c5a2923a2e10d24fca8bc7337cdee6f 827 PRINTS PR01159 DNA gyrase subunit B signature 216 229 2.2E-69 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMK58_14305 1c5a2923a2e10d24fca8bc7337cdee6f 827 PRINTS PR01159 DNA gyrase subunit B signature 242 264 2.2E-69 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMK58_14305 1c5a2923a2e10d24fca8bc7337cdee6f 827 PRINTS PR01159 DNA gyrase subunit B signature 269 287 2.2E-69 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMK58_14305 1c5a2923a2e10d24fca8bc7337cdee6f 827 PRINTS PR01159 DNA gyrase subunit B signature 15 25 2.2E-69 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMK58_14305 1c5a2923a2e10d24fca8bc7337cdee6f 827 PRINTS PR01159 DNA gyrase subunit B signature 201 216 2.2E-69 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMK58_14305 1c5a2923a2e10d24fca8bc7337cdee6f 827 PRINTS PR01159 DNA gyrase subunit B signature 796 812 2.2E-69 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMK58_14305 1c5a2923a2e10d24fca8bc7337cdee6f 827 PRINTS PR01159 DNA gyrase subunit B signature 339 355 2.2E-69 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMK58_14305 1c5a2923a2e10d24fca8bc7337cdee6f 827 PRINTS PR01159 DNA gyrase subunit B signature 387 401 2.2E-69 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMK58_14305 1c5a2923a2e10d24fca8bc7337cdee6f 827 PRINTS PR01159 DNA gyrase subunit B signature 780 792 2.2E-69 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMK58_14305 1c5a2923a2e10d24fca8bc7337cdee6f 827 PRINTS PR01159 DNA gyrase subunit B signature 497 506 2.2E-69 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMK58_14305 1c5a2923a2e10d24fca8bc7337cdee6f 827 PRINTS PR01159 DNA gyrase subunit B signature 401 421 2.2E-69 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMK58_14305 1c5a2923a2e10d24fca8bc7337cdee6f 827 ProSitePatterns PS00177 DNA topoisomerase II signature. 449 457 - T 11-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMK58_14305 1c5a2923a2e10d24fca8bc7337cdee6f 827 SUPERFAMILY SSF55874 15 229 4.45E-65 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_07930 81ac80333a5f8b4c2fbc48a73d31bd5a 216 Gene3D G3DSA:2.20.110.10 58 163 6.4E-11 T 11-10-2018 AMK58_07930 81ac80333a5f8b4c2fbc48a73d31bd5a 216 SUPERFAMILY SSF82185 56 146 3.53E-13 T 11-10-2018 AMK58_07930 81ac80333a5f8b4c2fbc48a73d31bd5a 216 Pfam PF02493 MORN repeat 62 77 6.7 T 11-10-2018 IPR003409 MORN motif AMK58_07930 81ac80333a5f8b4c2fbc48a73d31bd5a 216 Pfam PF02493 MORN repeat 130 150 0.19 T 11-10-2018 IPR003409 MORN motif AMK58_07930 81ac80333a5f8b4c2fbc48a73d31bd5a 216 Pfam PF02493 MORN repeat 107 129 0.017 T 11-10-2018 IPR003409 MORN motif AMK58_14895 37bf933276be89777345fdb7b0d569f6 268 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 102 135 - T 11-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMK58_14895 37bf933276be89777345fdb7b0d569f6 268 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 24 229 4.4E-48 T 11-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 AMK58_14895 37bf933276be89777345fdb7b0d569f6 268 Gene3D G3DSA:3.30.950.10 138 266 1.7E-39 T 11-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 AMK58_14895 37bf933276be89777345fdb7b0d569f6 268 Gene3D G3DSA:3.40.1010.10 15 137 5.5E-40 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 AMK58_14895 37bf933276be89777345fdb7b0d569f6 268 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 22 255 1.6E-82 T 11-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMK58_14895 37bf933276be89777345fdb7b0d569f6 268 SUPERFAMILY SSF53790 18 261 5.5E-69 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 AMK58_04205 6dae9a5fbc095142e0b41e384e23bbb9 487 SUPERFAMILY SSF90123 342 434 2.88E-5 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMK58_04205 6dae9a5fbc095142e0b41e384e23bbb9 487 Gene3D G3DSA:3.40.50.300 61 303 1.1E-33 T 11-10-2018 AMK58_04205 6dae9a5fbc095142e0b41e384e23bbb9 487 Pfam PF00350 Dynamin family 61 214 7.1E-12 T 11-10-2018 IPR022812 Dynamin superfamily AMK58_04205 6dae9a5fbc095142e0b41e384e23bbb9 487 SUPERFAMILY SSF52540 58 247 4.71E-16 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_19175 433a855245f4034f95e2ce2ab4594e4f 216 TIGRFAM TIGR02081 metW: methionine biosynthesis protein MetW 20 213 1.1E-75 T 11-10-2018 IPR010743 Methionine biosynthesis MetW KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344 AMK58_19175 433a855245f4034f95e2ce2ab4594e4f 216 Gene3D G3DSA:3.40.50.150 22 193 1.9E-26 T 11-10-2018 AMK58_19175 433a855245f4034f95e2ce2ab4594e4f 216 SUPERFAMILY SSF53335 21 185 1.12E-29 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_19175 433a855245f4034f95e2ce2ab4594e4f 216 Pfam PF07021 Methionine biosynthesis protein MetW 20 213 1.3E-80 T 11-10-2018 IPR010743 Methionine biosynthesis MetW KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344 AMK58_02110 35b960fdd3449035a4bc60617faec88e 534 Gene3D G3DSA:3.40.50.1380 10 209 6.9E-84 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily AMK58_02110 35b960fdd3449035a4bc60617faec88e 534 SMART SM00851 29 141 7.1E-51 T 11-10-2018 IPR011607 Methylglyoxal synthase-like domain AMK58_02110 35b960fdd3449035a4bc60617faec88e 534 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 19 534 1.6E-210 T 11-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMK58_02110 35b960fdd3449035a4bc60617faec88e 534 Gene3D G3DSA:3.40.140.20 217 370 5.7E-58 T 11-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMK58_02110 35b960fdd3449035a4bc60617faec88e 534 Pfam PF02142 MGS-like domain 29 140 1.4E-24 T 11-10-2018 IPR011607 Methylglyoxal synthase-like domain AMK58_02110 35b960fdd3449035a4bc60617faec88e 534 SUPERFAMILY SSF52335 17 207 6.72E-67 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily AMK58_02110 35b960fdd3449035a4bc60617faec88e 534 PIRSF PIRSF000414 13 534 5.3E-214 T 11-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMK58_02110 35b960fdd3449035a4bc60617faec88e 534 Gene3D G3DSA:3.40.140.20 391 534 1.0E-55 T 11-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMK58_02110 35b960fdd3449035a4bc60617faec88e 534 SUPERFAMILY SSF53927 222 534 8.82E-130 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 AMK58_02110 35b960fdd3449035a4bc60617faec88e 534 Pfam PF01808 AICARFT/IMPCHase bienzyme 146 458 9.5E-121 T 11-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMK58_02110 35b960fdd3449035a4bc60617faec88e 534 SMART SM00798 146 459 1.2E-208 T 11-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMK58_02110 35b960fdd3449035a4bc60617faec88e 534 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 17 534 44.427 T 11-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMK58_04030 55ef31083854873dbc641f45ad4d2263 129 Pfam PF02627 Carboxymuconolactone decarboxylase family 45 118 2.0E-17 T 11-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMK58_04030 55ef31083854873dbc641f45ad4d2263 129 Gene3D G3DSA:1.20.1290.10 3 129 1.1E-51 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMK58_04030 55ef31083854873dbc641f45ad4d2263 129 SUPERFAMILY SSF69118 3 126 1.44E-35 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMK58_04030 55ef31083854873dbc641f45ad4d2263 129 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 59 106 7.7E-18 T 11-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMK58_06905 e44b020441c23f3b4f798cae0d8fcfd0 585 Gene3D G3DSA:3.40.50.970 14 206 7.8E-60 T 11-10-2018 AMK58_06905 e44b020441c23f3b4f798cae0d8fcfd0 585 SUPERFAMILY SSF52518 23 192 1.23E-42 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMK58_06905 e44b020441c23f3b4f798cae0d8fcfd0 585 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 24 191 3.8E-45 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AMK58_06905 e44b020441c23f3b4f798cae0d8fcfd0 585 Gene3D G3DSA:3.40.50.970 368 581 1.2E-57 T 11-10-2018 AMK58_06905 e44b020441c23f3b4f798cae0d8fcfd0 585 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 412 556 5.0E-24 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMK58_06905 e44b020441c23f3b4f798cae0d8fcfd0 585 TIGRFAM TIGR03254 oxalate_oxc: oxalyl-CoA decarboxylase 21 575 1.9E-301 T 11-10-2018 IPR017660 Oxalyl-CoA decarboxylase GO:0008949|GO:0030976|GO:0033611|GO:0046872 KEGG: 00630+4.1.1.8|MetaCyc: PWY-6695|MetaCyc: PWY-6696|MetaCyc: PWY-7985 AMK58_06905 e44b020441c23f3b4f798cae0d8fcfd0 585 Gene3D G3DSA:3.40.50.1220 207 366 5.8E-43 T 11-10-2018 AMK58_06905 e44b020441c23f3b4f798cae0d8fcfd0 585 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 215 346 1.0E-32 T 11-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AMK58_06905 e44b020441c23f3b4f798cae0d8fcfd0 585 SUPERFAMILY SSF52467 207 370 7.77E-40 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AMK58_06905 e44b020441c23f3b4f798cae0d8fcfd0 585 SUPERFAMILY SSF52518 386 564 3.5E-40 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMK58_26905 952b7a68d418f7ba1d37867ff7e84444 843 Gene3D G3DSA:1.20.120.80 656 839 7.0E-8 T 11-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_26905 952b7a68d418f7ba1d37867ff7e84444 843 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 38 535 2.2E-204 T 11-10-2018 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005886|GO:0015990|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 AMK58_26905 952b7a68d418f7ba1d37867ff7e84444 843 SUPERFAMILY SSF81452 660 821 2.88E-12 T 11-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_26905 952b7a68d418f7ba1d37867ff7e84444 843 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 265 319 - T 11-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_26905 952b7a68d418f7ba1d37867ff7e84444 843 SUPERFAMILY SSF81442 36 533 2.35E-149 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_26905 952b7a68d418f7ba1d37867ff7e84444 843 PRINTS PR01165 Cytochrome c oxidase subunit I signature 368 386 7.1E-80 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_26905 952b7a68d418f7ba1d37867ff7e84444 843 PRINTS PR01165 Cytochrome c oxidase subunit I signature 309 324 7.1E-80 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_26905 952b7a68d418f7ba1d37867ff7e84444 843 PRINTS PR01165 Cytochrome c oxidase subunit I signature 82 105 7.1E-80 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_26905 952b7a68d418f7ba1d37867ff7e84444 843 PRINTS PR01165 Cytochrome c oxidase subunit I signature 183 201 7.1E-80 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_26905 952b7a68d418f7ba1d37867ff7e84444 843 PRINTS PR01165 Cytochrome c oxidase subunit I signature 212 231 7.1E-80 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_26905 952b7a68d418f7ba1d37867ff7e84444 843 PRINTS PR01165 Cytochrome c oxidase subunit I signature 263 284 7.1E-80 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_26905 952b7a68d418f7ba1d37867ff7e84444 843 PRINTS PR01165 Cytochrome c oxidase subunit I signature 446 467 7.1E-80 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_26905 952b7a68d418f7ba1d37867ff7e84444 843 PRINTS PR01165 Cytochrome c oxidase subunit I signature 35 60 7.1E-80 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_26905 952b7a68d418f7ba1d37867ff7e84444 843 PRINTS PR01165 Cytochrome c oxidase subunit I signature 109 133 7.1E-80 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_26905 952b7a68d418f7ba1d37867ff7e84444 843 PRINTS PR01165 Cytochrome c oxidase subunit I signature 396 415 7.1E-80 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_26905 952b7a68d418f7ba1d37867ff7e84444 843 PRINTS PR01165 Cytochrome c oxidase subunit I signature 151 163 7.1E-80 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_26905 952b7a68d418f7ba1d37867ff7e84444 843 PRINTS PR01165 Cytochrome c oxidase subunit I signature 333 354 7.1E-80 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_26905 952b7a68d418f7ba1d37867ff7e84444 843 Gene3D G3DSA:1.20.210.10 25 547 2.9E-171 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_26905 952b7a68d418f7ba1d37867ff7e84444 843 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 45 490 3.6E-133 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_20985 eb890b2d75b77b4da8eeff8de819e7e2 876 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 631 649 - T 11-10-2018 IPR028299 ClpA/B, conserved site 2 AMK58_20985 eb890b2d75b77b4da8eeff8de819e7e2 876 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 296 308 - T 11-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 AMK58_20985 eb890b2d75b77b4da8eeff8de819e7e2 876 SUPERFAMILY SSF81923 4 157 1.11E-40 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 AMK58_20985 eb890b2d75b77b4da8eeff8de819e7e2 876 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 95 146 2.5E-12 T 11-10-2018 IPR004176 Clp, N-terminal AMK58_20985 eb890b2d75b77b4da8eeff8de819e7e2 876 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 68 3.1E-13 T 11-10-2018 IPR004176 Clp, N-terminal AMK58_20985 eb890b2d75b77b4da8eeff8de819e7e2 876 Gene3D G3DSA:3.40.50.300 550 764 7.8E-88 T 11-10-2018 AMK58_20985 eb890b2d75b77b4da8eeff8de819e7e2 876 Gene3D G3DSA:3.40.50.300 345 544 1.9E-74 T 11-10-2018 AMK58_20985 eb890b2d75b77b4da8eeff8de819e7e2 876 SUPERFAMILY SSF52540 161 544 2.8E-100 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_20985 eb890b2d75b77b4da8eeff8de819e7e2 876 Gene3D G3DSA:1.10.1780.10 1 151 2.4E-34 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 AMK58_20985 eb890b2d75b77b4da8eeff8de819e7e2 876 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 766 846 1.6E-27 T 11-10-2018 IPR019489 Clp ATPase, C-terminal AMK58_20985 eb890b2d75b77b4da8eeff8de819e7e2 876 SMART SM01086 766 855 2.0E-41 T 11-10-2018 IPR019489 Clp ATPase, C-terminal AMK58_20985 eb890b2d75b77b4da8eeff8de819e7e2 876 Gene3D G3DSA:1.10.8.60 766 866 7.3E-28 T 11-10-2018 AMK58_20985 eb890b2d75b77b4da8eeff8de819e7e2 876 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 205 336 5.9E-14 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMK58_20985 eb890b2d75b77b4da8eeff8de819e7e2 876 SUPERFAMILY SSF52540 546 849 3.58E-80 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_20985 eb890b2d75b77b4da8eeff8de819e7e2 876 Gene3D G3DSA:3.40.50.300 152 344 6.3E-75 T 11-10-2018 AMK58_20985 eb890b2d75b77b4da8eeff8de819e7e2 876 SMART SM00382 200 346 9.3E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_20985 eb890b2d75b77b4da8eeff8de819e7e2 876 SMART SM00382 597 748 3.3E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_20985 eb890b2d75b77b4da8eeff8de819e7e2 876 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 601 619 3.6E-42 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 AMK58_20985 eb890b2d75b77b4da8eeff8de819e7e2 876 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 646 664 3.6E-42 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 AMK58_20985 eb890b2d75b77b4da8eeff8de819e7e2 876 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 708 722 3.6E-42 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 AMK58_20985 eb890b2d75b77b4da8eeff8de819e7e2 876 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 675 693 3.6E-42 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 AMK58_20985 eb890b2d75b77b4da8eeff8de819e7e2 876 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 855 0.0 T 11-10-2018 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0042026 AMK58_20985 eb890b2d75b77b4da8eeff8de819e7e2 876 Pfam PF07724 AAA domain (Cdc48 subfamily) 596 760 2.1E-56 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMK58_13365 d82e6a12de4bcf4ab557c2913fb41c7f 367 SUPERFAMILY SSF47823 73 168 1.49E-20 T 11-10-2018 AMK58_13365 d82e6a12de4bcf4ab557c2913fb41c7f 367 SUPERFAMILY SSF56349 169 366 1.44E-42 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMK58_13365 d82e6a12de4bcf4ab557c2913fb41c7f 367 Gene3D G3DSA:1.10.443.10 169 356 5.0E-46 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMK58_13365 d82e6a12de4bcf4ab557c2913fb41c7f 367 Pfam PF00589 Phage integrase family 177 354 3.7E-15 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMK58_13365 d82e6a12de4bcf4ab557c2913fb41c7f 367 Gene3D G3DSA:1.10.150.130 65 166 1.0E-20 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal AMK58_09950 22b274076242904e27d934b7ebf6cda5 481 Gene3D G3DSA:3.30.70.1570 374 481 2.1E-29 T 11-10-2018 AMK58_09950 22b274076242904e27d934b7ebf6cda5 481 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 228 247 - T 11-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 AMK58_09950 22b274076242904e27d934b7ebf6cda5 481 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 7 337 1.0E-92 T 11-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 AMK58_09950 22b274076242904e27d934b7ebf6cda5 481 SMART SM01329 6 337 4.5E-152 T 11-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 AMK58_09950 22b274076242904e27d934b7ebf6cda5 481 SUPERFAMILY SSF53659 3 341 6.91E-114 T 11-10-2018 AMK58_09950 22b274076242904e27d934b7ebf6cda5 481 TIGRFAM TIGR02924 ICDH_alpha: isocitrate dehydrogenase 5 478 1.8E-202 T 11-10-2018 IPR014273 Isocitrate dehydrogenase, alphaproteobacteria-type GO:0004450|GO:0006097|GO:0006099|GO:0046872|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 AMK58_09950 22b274076242904e27d934b7ebf6cda5 481 Gene3D G3DSA:3.40.718.10 1 368 1.7E-130 T 11-10-2018 AMK58_12865 7023cdc48a7cdec97da0686cbbc39bae 147 ProSitePatterns PS00893 Nudix box signature. 53 74 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMK58_12865 7023cdc48a7cdec97da0686cbbc39bae 147 SUPERFAMILY SSF55811 16 144 2.98E-41 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMK58_12865 7023cdc48a7cdec97da0686cbbc39bae 147 Pfam PF14815 NUDIX domain 24 140 3.8E-21 T 11-10-2018 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 AMK58_12865 7023cdc48a7cdec97da0686cbbc39bae 147 PRINTS PR00502 NUDIX hydrolase family signature 48 62 3.3E-9 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AMK58_12865 7023cdc48a7cdec97da0686cbbc39bae 147 PRINTS PR00502 NUDIX hydrolase family signature 62 77 3.3E-9 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AMK58_12865 7023cdc48a7cdec97da0686cbbc39bae 147 Gene3D G3DSA:3.90.79.10 14 147 1.4E-42 T 11-10-2018 AMK58_07470 8fd2d9b6e4588b79277dce5705e489c0 251 SMART SM00382 31 225 3.8E-5 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_07470 8fd2d9b6e4588b79277dce5705e489c0 251 Pfam PF00005 ABC transporter 23 178 4.2E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_07470 8fd2d9b6e4588b79277dce5705e489c0 251 Gene3D G3DSA:3.40.50.300 4 249 3.0E-59 T 11-10-2018 AMK58_07470 8fd2d9b6e4588b79277dce5705e489c0 251 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 225 247 6.2E-9 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AMK58_07470 8fd2d9b6e4588b79277dce5705e489c0 251 SUPERFAMILY SSF52540 5 247 2.02E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_12950 4cd4d4f51857978beb90b02bdd7e392b 543 SUPERFAMILY SSF53738 5 212 1.61E-46 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_12950 4cd4d4f51857978beb90b02bdd7e392b 543 SUPERFAMILY SSF53738 183 291 1.65E-30 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_12950 4cd4d4f51857978beb90b02bdd7e392b 543 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 442 503 1.8E-6 T 11-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_12950 4cd4d4f51857978beb90b02bdd7e392b 543 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 14 150 1.3E-32 T 11-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_12950 4cd4d4f51857978beb90b02bdd7e392b 543 SUPERFAMILY SSF53738 278 414 6.28E-36 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_12950 4cd4d4f51857978beb90b02bdd7e392b 543 Gene3D G3DSA:3.40.120.10 189 290 1.6E-36 T 11-10-2018 AMK58_12950 4cd4d4f51857978beb90b02bdd7e392b 543 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 294 407 2.2E-30 T 11-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_12950 4cd4d4f51857978beb90b02bdd7e392b 543 Gene3D G3DSA:3.30.310.50 410 543 3.2E-42 T 11-10-2018 AMK58_12950 4cd4d4f51857978beb90b02bdd7e392b 543 SUPERFAMILY SSF55957 409 543 6.28E-42 T 11-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_12950 4cd4d4f51857978beb90b02bdd7e392b 543 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 184 286 2.7E-15 T 11-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_12950 4cd4d4f51857978beb90b02bdd7e392b 543 Gene3D G3DSA:3.40.120.10 291 409 7.7E-46 T 11-10-2018 AMK58_12950 4cd4d4f51857978beb90b02bdd7e392b 543 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 106 120 3.2E-23 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_12950 4cd4d4f51857978beb90b02bdd7e392b 543 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 205 224 3.2E-23 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_12950 4cd4d4f51857978beb90b02bdd7e392b 543 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 241 254 3.2E-23 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_12950 4cd4d4f51857978beb90b02bdd7e392b 543 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 270 285 3.2E-23 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_12950 4cd4d4f51857978beb90b02bdd7e392b 543 Gene3D G3DSA:3.40.120.10 2 188 4.2E-77 T 11-10-2018 AMK58_12950 4cd4d4f51857978beb90b02bdd7e392b 543 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 107 116 - T 11-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_18070 0b0370f6b481e954bffcfd011af04e4c 291 SUPERFAMILY SSF88946 12 121 1.88E-39 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMK58_18070 0b0370f6b481e954bffcfd011af04e4c 291 PIRSF PIRSF000770 13 288 3.1E-33 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_18070 0b0370f6b481e954bffcfd011af04e4c 291 PRINTS PR00046 Major sigma-70 factor signature 254 269 5.5E-22 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_18070 0b0370f6b481e954bffcfd011af04e4c 291 PRINTS PR00046 Major sigma-70 factor signature 269 280 5.5E-22 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_18070 0b0370f6b481e954bffcfd011af04e4c 291 PRINTS PR00046 Major sigma-70 factor signature 77 90 5.5E-22 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_18070 0b0370f6b481e954bffcfd011af04e4c 291 PRINTS PR00046 Major sigma-70 factor signature 101 109 5.5E-22 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_18070 0b0370f6b481e954bffcfd011af04e4c 291 PRINTS PR00046 Major sigma-70 factor signature 235 247 5.5E-22 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_18070 0b0370f6b481e954bffcfd011af04e4c 291 Gene3D G3DSA:1.20.140.160 150 286 1.2E-15 T 11-10-2018 AMK58_18070 0b0370f6b481e954bffcfd011af04e4c 291 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 48 283 4.0E-31 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMK58_18070 0b0370f6b481e954bffcfd011af04e4c 291 Gene3D G3DSA:1.20.120.1810 14 120 5.0E-32 T 11-10-2018 AMK58_18070 0b0370f6b481e954bffcfd011af04e4c 291 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 254 280 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_18070 0b0370f6b481e954bffcfd011af04e4c 291 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 15 284 1.5E-100 T 11-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMK58_18070 0b0370f6b481e954bffcfd011af04e4c 291 Pfam PF04545 Sigma-70, region 4 231 281 2.9E-15 T 11-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 AMK58_18070 0b0370f6b481e954bffcfd011af04e4c 291 SUPERFAMILY SSF88659 195 286 1.5E-18 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMK58_18070 0b0370f6b481e954bffcfd011af04e4c 291 Pfam PF04542 Sigma-70 region 2 53 121 6.2E-16 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMK58_20310 6045be494715520537b0b210a043769f 428 Pfam PF00202 Aminotransferase class-III 21 421 5.2E-129 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMK58_20310 6045be494715520537b0b210a043769f 428 PIRSF PIRSF000521 122 425 8.4E-42 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMK58_20310 6045be494715520537b0b210a043769f 428 PIRSF PIRSF000521 18 127 4.9E-4 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMK58_20310 6045be494715520537b0b210a043769f 428 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 235 272 - T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMK58_20310 6045be494715520537b0b210a043769f 428 Gene3D G3DSA:3.90.1150.10 6 418 3.7E-167 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_20310 6045be494715520537b0b210a043769f 428 TIGRFAM TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase 9 423 8.6E-190 T 11-10-2018 IPR004632 4-aminobutyrate aminotransferase, bacterial GO:0003867|GO:0009448 AMK58_20310 6045be494715520537b0b210a043769f 428 SUPERFAMILY SSF53383 18 425 6.46E-139 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_20310 6045be494715520537b0b210a043769f 428 Gene3D G3DSA:3.40.640.10 58 318 3.7E-167 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_19015 cce0a613a9cef44270d912c1daa49dc7 95 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 4 95 5.3E-27 T 11-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 AMK58_19015 cce0a613a9cef44270d912c1daa49dc7 95 SUPERFAMILY SSF141000 2 93 6.54E-29 T 11-10-2018 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C GO:0006450 AMK58_19015 cce0a613a9cef44270d912c1daa49dc7 95 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 2 95 23.798 T 11-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 AMK58_19015 cce0a613a9cef44270d912c1daa49dc7 95 Gene3D G3DSA:1.10.20.60 1 93 2.3E-26 T 11-10-2018 AMK58_19015 cce0a613a9cef44270d912c1daa49dc7 95 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 20 90 7.2E-20 T 11-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 AMK58_07350 96be6ca0f7e574946d44c9c3fdce245f 378 Pfam PF01168 Alanine racemase, N-terminal domain 19 233 6.3E-56 T 11-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMK58_07350 96be6ca0f7e574946d44c9c3fdce245f 378 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 42 52 - T 11-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMK58_07350 96be6ca0f7e574946d44c9c3fdce245f 378 TIGRFAM TIGR00492 alr: alanine racemase 15 369 1.7E-74 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMK58_07350 96be6ca0f7e574946d44c9c3fdce245f 378 Hamap MF_01201 Alanine racemase. 12 370 28.962 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMK58_07350 96be6ca0f7e574946d44c9c3fdce245f 378 Gene3D G3DSA:2.40.37.10 20 369 4.6E-115 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AMK58_07350 96be6ca0f7e574946d44c9c3fdce245f 378 SUPERFAMILY SSF50621 239 371 3.0E-41 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AMK58_07350 96be6ca0f7e574946d44c9c3fdce245f 378 Gene3D G3DSA:3.20.20.10 21 231 4.6E-115 T 11-10-2018 IPR029066 PLP-binding barrel AMK58_07350 96be6ca0f7e574946d44c9c3fdce245f 378 Pfam PF00842 Alanine racemase, C-terminal domain 246 369 1.4E-35 T 11-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMK58_07350 96be6ca0f7e574946d44c9c3fdce245f 378 SMART SM01005 244 370 2.7E-53 T 11-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMK58_07350 96be6ca0f7e574946d44c9c3fdce245f 378 PRINTS PR00992 Alanine racemase signature 135 147 1.1E-44 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMK58_07350 96be6ca0f7e574946d44c9c3fdce245f 378 PRINTS PR00992 Alanine racemase signature 37 53 1.1E-44 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMK58_07350 96be6ca0f7e574946d44c9c3fdce245f 378 PRINTS PR00992 Alanine racemase signature 206 233 1.1E-44 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMK58_07350 96be6ca0f7e574946d44c9c3fdce245f 378 PRINTS PR00992 Alanine racemase signature 352 365 1.1E-44 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMK58_07350 96be6ca0f7e574946d44c9c3fdce245f 378 PRINTS PR00992 Alanine racemase signature 169 180 1.1E-44 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMK58_07350 96be6ca0f7e574946d44c9c3fdce245f 378 PRINTS PR00992 Alanine racemase signature 298 315 1.1E-44 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMK58_07350 96be6ca0f7e574946d44c9c3fdce245f 378 PRINTS PR00992 Alanine racemase signature 277 292 1.1E-44 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMK58_07350 96be6ca0f7e574946d44c9c3fdce245f 378 PRINTS PR00992 Alanine racemase signature 73 91 1.1E-44 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMK58_07350 96be6ca0f7e574946d44c9c3fdce245f 378 SUPERFAMILY SSF51419 19 236 1.61E-56 T 11-10-2018 IPR029066 PLP-binding barrel AMK58_08365 9174cf8348128b220d2084e46d2b4a4f 149 Pfam PF13673 Acetyltransferase (GNAT) domain 47 148 5.4E-14 T 11-10-2018 IPR000182 GNAT domain AMK58_08365 9174cf8348128b220d2084e46d2b4a4f 149 SUPERFAMILY SSF55729 1 148 1.35E-26 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_08365 9174cf8348128b220d2084e46d2b4a4f 149 Gene3D G3DSA:3.40.630.30 1 147 8.7E-36 T 11-10-2018 AMK58_25290 9c410d540a24d550aabf1bbe2387c070 368 Pfam PF02154 Flagellar motor switch protein FliM 76 263 4.2E-52 T 11-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 AMK58_25290 9c410d540a24d550aabf1bbe2387c070 368 SUPERFAMILY SSF103039 79 263 2.25E-8 T 11-10-2018 IPR028976 CheC-like superfamily AMK58_25290 9c410d540a24d550aabf1bbe2387c070 368 PRINTS PR00955 Flagellar motor switch protein FliM signature 41 54 4.0E-16 T 11-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 AMK58_25290 9c410d540a24d550aabf1bbe2387c070 368 PRINTS PR00955 Flagellar motor switch protein FliM signature 147 166 4.0E-16 T 11-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 AMK58_25290 9c410d540a24d550aabf1bbe2387c070 368 PRINTS PR00955 Flagellar motor switch protein FliM signature 245 263 4.0E-16 T 11-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 AMK58_25290 9c410d540a24d550aabf1bbe2387c070 368 PRINTS PR00955 Flagellar motor switch protein FliM signature 122 138 4.0E-16 T 11-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 AMK58_25290 9c410d540a24d550aabf1bbe2387c070 368 PIRSF PIRSF002888 40 362 1.0E-77 T 11-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 AMK58_25290 9c410d540a24d550aabf1bbe2387c070 368 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 44 354 6.6E-73 T 11-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 AMK58_25290 9c410d540a24d550aabf1bbe2387c070 368 Gene3D G3DSA:3.40.1550.10 77 264 1.0E-45 T 11-10-2018 IPR028976 CheC-like superfamily AMK58_25290 9c410d540a24d550aabf1bbe2387c070 368 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 285 352 6.6E-14 T 11-10-2018 IPR001543 Surface presentation of antigen (SpoA) AMK58_25290 9c410d540a24d550aabf1bbe2387c070 368 SUPERFAMILY SSF101801 282 360 1.31E-10 T 11-10-2018 IPR036429 SpoA-like superfamily AMK58_22305 b49a56b189fa990d440b156e30545335 332 Pfam PF02655 ATP-grasp domain 124 290 1.1E-26 T 11-10-2018 IPR003806 ATP-grasp fold, DUF201-type GO:0005524|GO:0046872 AMK58_22305 b49a56b189fa990d440b156e30545335 332 Gene3D G3DSA:3.30.1490.350 141 200 4.7E-28 T 11-10-2018 AMK58_22305 b49a56b189fa990d440b156e30545335 332 Gene3D G3DSA:3.30.470.20 119 303 4.7E-28 T 11-10-2018 AMK58_22305 b49a56b189fa990d440b156e30545335 332 SUPERFAMILY SSF56059 117 322 1.54E-23 T 11-10-2018 AMK58_22305 b49a56b189fa990d440b156e30545335 332 PIRSF PIRSF016766 1 312 3.4E-69 T 11-10-2018 IPR024710 Tyramine--L-glutamate ligase KEGG: 00680+6.3.4.24|MetaCyc: PWY-5254 AMK58_04585 126081f7db9c9674ea5d5d9ba9ff3404 305 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 237 299 1.0E-28 T 11-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 AMK58_04585 126081f7db9c9674ea5d5d9ba9ff3404 305 PIRSF PIRSF000375 1 299 1.2E-135 T 11-10-2018 IPR016217 Nitrogen fixation, NifU AMK58_04585 126081f7db9c9674ea5d5d9ba9ff3404 305 Gene3D G3DSA:1.10.10.1100 135 190 7.8E-7 T 11-10-2018 AMK58_04585 126081f7db9c9674ea5d5d9ba9ff3404 305 Gene3D G3DSA:3.90.1010.10 1 134 6.1E-55 T 11-10-2018 AMK58_04585 126081f7db9c9674ea5d5d9ba9ff3404 305 Pfam PF04324 BFD-like [2Fe-2S] binding domain 135 184 1.8E-16 T 11-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain AMK58_04585 126081f7db9c9674ea5d5d9ba9ff3404 305 SUPERFAMILY SSF117916 223 297 1.0E-19 T 11-10-2018 IPR034904 Fe-S cluster assembly domain superfamily AMK58_04585 126081f7db9c9674ea5d5d9ba9ff3404 305 Pfam PF01106 NifU-like domain 235 295 4.0E-21 T 11-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 AMK58_04585 126081f7db9c9674ea5d5d9ba9ff3404 305 Pfam PF01592 NifU-like N terminal domain 4 124 5.2E-51 T 11-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 AMK58_04585 126081f7db9c9674ea5d5d9ba9ff3404 305 TIGRFAM TIGR02000 NifU_proper: Fe-S cluster assembly protein NifU 1 298 1.6E-154 T 11-10-2018 IPR010238 NIF system FeS cluster assembly, NifU GO:0005506|GO:0016226|GO:0051536 AMK58_04585 126081f7db9c9674ea5d5d9ba9ff3404 305 Gene3D G3DSA:3.30.300.130 227 299 1.4E-19 T 11-10-2018 IPR034904 Fe-S cluster assembly domain superfamily AMK58_04585 126081f7db9c9674ea5d5d9ba9ff3404 305 SUPERFAMILY SSF82649 2 131 1.26E-43 T 11-10-2018 AMK58_07385 559afde169a87432fd054c0349f0cc94 318 Gene3D G3DSA:3.40.366.10 5 294 4.3E-98 T 11-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 AMK58_07385 559afde169a87432fd054c0349f0cc94 318 PIRSF PIRSF000446 1 318 2.4E-93 T 11-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 AMK58_07385 559afde169a87432fd054c0349f0cc94 318 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 3 299 1.5E-95 T 11-10-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 AMK58_07385 559afde169a87432fd054c0349f0cc94 318 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 6 308 6.2E-47 T 11-10-2018 IPR020801 Polyketide synthase, acyl transferase domain AMK58_07385 559afde169a87432fd054c0349f0cc94 318 Gene3D G3DSA:3.30.70.250 130 207 4.3E-98 T 11-10-2018 AMK58_07385 559afde169a87432fd054c0349f0cc94 318 Pfam PF00698 Acyl transferase domain 5 283 3.2E-38 T 11-10-2018 IPR014043 Acyl transferase AMK58_07385 559afde169a87432fd054c0349f0cc94 318 SUPERFAMILY SSF55048 131 205 1.09E-14 T 11-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding AMK58_07385 559afde169a87432fd054c0349f0cc94 318 SUPERFAMILY SSF52151 4 305 7.15E-74 T 11-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase AMK58_08535 693af26c7b52feb3c3e8850b905788e3 139 SUPERFAMILY SSF110916 14 100 3.01E-13 T 11-10-2018 AMK58_08535 693af26c7b52feb3c3e8850b905788e3 139 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 21 37 - T 11-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AMK58_08535 693af26c7b52feb3c3e8850b905788e3 139 Gene3D G3DSA:3.30.160.20 1 137 6.9E-39 T 11-10-2018 AMK58_08535 693af26c7b52feb3c3e8850b905788e3 139 Pfam PF00472 RF-1 domain 8 133 1.9E-22 T 11-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AMK58_27555 cca64ad58f6c97f89836848d3e8813f9 494 SUPERFAMILY SSF51735 2 281 3.54E-101 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_27555 cca64ad58f6c97f89836848d3e8813f9 494 SUPERFAMILY SSF48179 283 488 1.94E-69 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMK58_27555 cca64ad58f6c97f89836848d3e8813f9 494 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 28 188 7.7E-45 T 11-10-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 AMK58_27555 cca64ad58f6c97f89836848d3e8813f9 494 PRINTS PR00084 Mannitol dehydrogenase signature 29 39 3.9E-20 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AMK58_27555 cca64ad58f6c97f89836848d3e8813f9 494 PRINTS PR00084 Mannitol dehydrogenase signature 179 192 3.9E-20 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AMK58_27555 cca64ad58f6c97f89836848d3e8813f9 494 PRINTS PR00084 Mannitol dehydrogenase signature 218 231 3.9E-20 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AMK58_27555 cca64ad58f6c97f89836848d3e8813f9 494 PRINTS PR00084 Mannitol dehydrogenase signature 248 263 3.9E-20 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AMK58_27555 cca64ad58f6c97f89836848d3e8813f9 494 Gene3D G3DSA:3.40.50.720 1 281 1.2E-109 T 11-10-2018 AMK58_27555 cca64ad58f6c97f89836848d3e8813f9 494 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 217 460 4.2E-86 T 11-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 AMK58_27555 cca64ad58f6c97f89836848d3e8813f9 494 Gene3D G3DSA:1.10.1040.10 282 492 4.8E-81 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMK58_18555 8350e63eee11d49001f57a444951f00e 492 Pfam PF00571 CBS domain 156 206 1.4E-8 T 11-10-2018 IPR000644 CBS domain AMK58_18555 8350e63eee11d49001f57a444951f00e 492 Pfam PF00571 CBS domain 95 148 3.0E-11 T 11-10-2018 IPR000644 CBS domain AMK58_18555 8350e63eee11d49001f57a444951f00e 492 SMART SM01240 9 478 0.0 T 11-10-2018 AMK58_18555 8350e63eee11d49001f57a444951f00e 492 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 10 491 85.172 T 11-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 AMK58_18555 8350e63eee11d49001f57a444951f00e 492 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 10 478 2.9E-163 T 11-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 AMK58_18555 8350e63eee11d49001f57a444951f00e 492 SUPERFAMILY SSF54631 65 209 6.57E-31 T 11-10-2018 AMK58_18555 8350e63eee11d49001f57a444951f00e 492 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 300 312 - T 11-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 AMK58_18555 8350e63eee11d49001f57a444951f00e 492 PIRSF PIRSF000130 1 492 7.1E-206 T 11-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 AMK58_18555 8350e63eee11d49001f57a444951f00e 492 SMART SM00116 98 151 1.9E-12 T 11-10-2018 IPR000644 CBS domain AMK58_18555 8350e63eee11d49001f57a444951f00e 492 SMART SM00116 163 211 5.6E-7 T 11-10-2018 IPR000644 CBS domain AMK58_18555 8350e63eee11d49001f57a444951f00e 492 Gene3D G3DSA:3.20.20.70 2 491 4.0E-215 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_18555 8350e63eee11d49001f57a444951f00e 492 SUPERFAMILY SSF51412 6 482 5.36E-125 T 11-10-2018 AMK58_18555 8350e63eee11d49001f57a444951f00e 492 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 10 459 8.2E-199 T 11-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 AMK58_16850 507f2b91c64db7b5428cbe60f1c3b7c0 260 Gene3D G3DSA:3.40.1210.10 11 260 1.5E-90 T 11-10-2018 IPR036523 SurE-like phosphatase/nucleotidase superfamily GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 AMK58_16850 507f2b91c64db7b5428cbe60f1c3b7c0 260 Pfam PF01975 Survival protein SurE 13 196 7.8E-60 T 11-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 AMK58_16850 507f2b91c64db7b5428cbe60f1c3b7c0 260 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 12 247 2.3E-66 T 11-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 AMK58_16850 507f2b91c64db7b5428cbe60f1c3b7c0 260 SUPERFAMILY SSF64167 12 259 1.24E-82 T 11-10-2018 AMK58_16850 507f2b91c64db7b5428cbe60f1c3b7c0 260 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 11 260 37.285 T 11-10-2018 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 AMK58_24245 3b372b7c930a324f02b1d7867bc64c43 566 SUPERFAMILY SSF55073 365 551 9.73E-32 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_24245 3b372b7c930a324f02b1d7867bc64c43 566 SUPERFAMILY SSF81343 12 191 4.38E-12 T 11-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMK58_24245 3b372b7c930a324f02b1d7867bc64c43 566 Gene3D G3DSA:3.30.70.1230 363 559 6.8E-32 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_24245 3b372b7c930a324f02b1d7867bc64c43 566 Gene3D G3DSA:3.10.20.30 255 348 7.8E-21 T 11-10-2018 IPR012675 Beta-grasp domain superfamily AMK58_24245 3b372b7c930a324f02b1d7867bc64c43 566 SMART SM00044 324 536 1.5E-4 T 11-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMK58_24245 3b372b7c930a324f02b1d7867bc64c43 566 SUPERFAMILY SSF54292 258 345 1.12E-22 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMK58_24245 3b372b7c930a324f02b1d7867bc64c43 566 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 370 544 5.4E-14 T 11-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMK58_24245 3b372b7c930a324f02b1d7867bc64c43 566 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 265 338 1.2E-11 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMK58_17290 2df4c9e02dd5d0fd21abf1fb5df2789b 832 Gene3D G3DSA:3.40.50.2000 476 804 0.0 T 11-10-2018 AMK58_17290 2df4c9e02dd5d0fd21abf1fb5df2789b 832 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 662 674 - T 11-10-2018 IPR035090 Phosphorylase pyridoxal-phosphate attachment site KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 AMK58_17290 2df4c9e02dd5d0fd21abf1fb5df2789b 832 Pfam PF00343 Carbohydrate phosphorylase 106 819 0.0 T 11-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 AMK58_17290 2df4c9e02dd5d0fd21abf1fb5df2789b 832 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 18 819 0.0 T 11-10-2018 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 AMK58_17290 2df4c9e02dd5d0fd21abf1fb5df2789b 832 SUPERFAMILY SSF53756 14 823 0.0 T 11-10-2018 AMK58_17290 2df4c9e02dd5d0fd21abf1fb5df2789b 832 PIRSF PIRSF000460 7 831 5.7E-241 T 11-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 AMK58_17290 2df4c9e02dd5d0fd21abf1fb5df2789b 832 Gene3D G3DSA:3.40.50.2000 30 821 0.0 T 11-10-2018 AMK58_11770 f961b8db213c2f280b6acff377dfbb69 182 Gene3D G3DSA:3.30.450.20 56 181 1.1E-16 T 11-10-2018 AMK58_11770 f961b8db213c2f280b6acff377dfbb69 182 SMART SM01049 50 131 1.6E-7 T 11-10-2018 IPR033480 Single Cache domain 2 AMK58_11770 f961b8db213c2f280b6acff377dfbb69 182 Pfam PF17200 Single Cache domain 2 79 166 1.9E-15 T 11-10-2018 IPR033480 Single Cache domain 2 AMK58_25925 0f608f36a5ef0b1718472dca7eae376c 254 Pfam PF00005 ABC transporter 37 182 3.9E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_25925 0f608f36a5ef0b1718472dca7eae376c 254 SUPERFAMILY SSF52540 19 252 2.55E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_25925 0f608f36a5ef0b1718472dca7eae376c 254 SMART SM00382 46 233 1.4E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_25925 0f608f36a5ef0b1718472dca7eae376c 254 Gene3D G3DSA:3.40.50.300 17 254 5.6E-66 T 11-10-2018 AMK58_25925 0f608f36a5ef0b1718472dca7eae376c 254 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_14285 cabde0588cb90c3465914a8069f673a4 558 SUPERFAMILY SSF52540 322 557 3.66E-83 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_14285 cabde0588cb90c3465914a8069f673a4 558 SMART SM00382 358 544 9.0E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_14285 cabde0588cb90c3465914a8069f673a4 558 SUPERFAMILY SSF90123 3 321 1.96E-74 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMK58_14285 cabde0588cb90c3465914a8069f673a4 558 Pfam PF00005 ABC transporter 349 498 2.5E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_14285 cabde0588cb90c3465914a8069f673a4 558 Pfam PF00664 ABC transporter transmembrane region 17 286 2.3E-50 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMK58_14285 cabde0588cb90c3465914a8069f673a4 558 Gene3D G3DSA:1.20.1560.10 1 315 5.1E-76 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMK58_14285 cabde0588cb90c3465914a8069f673a4 558 ProSitePatterns PS00211 ABC transporters family signature. 470 484 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_14285 cabde0588cb90c3465914a8069f673a4 558 Gene3D G3DSA:3.40.50.300 329 558 2.6E-83 T 11-10-2018 AMK58_15175 60ec33a7ce553100a1a0d2778e13278b 1086 SUPERFAMILY SSF82693 40 133 3.66E-26 T 11-10-2018 AMK58_15175 60ec33a7ce553100a1a0d2778e13278b 1086 SUPERFAMILY SSF82866 840 1034 1.83E-42 T 11-10-2018 AMK58_15175 60ec33a7ce553100a1a0d2778e13278b 1086 Gene3D G3DSA:1.20.1640.10 521 1032 0.0 T 11-10-2018 AMK58_15175 60ec33a7ce553100a1a0d2778e13278b 1086 Gene3D G3DSA:3.30.70.1430 40 825 0.0 T 11-10-2018 AMK58_15175 60ec33a7ce553100a1a0d2778e13278b 1086 Gene3D G3DSA:1.20.1640.10 10 520 0.0 T 11-10-2018 AMK58_15175 60ec33a7ce553100a1a0d2778e13278b 1086 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 3 1043 0.0 T 11-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 AMK58_15175 60ec33a7ce553100a1a0d2778e13278b 1086 PRINTS PR00702 Acriflavin resistance protein family signature 365 386 3.6E-93 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_15175 60ec33a7ce553100a1a0d2778e13278b 1086 PRINTS PR00702 Acriflavin resistance protein family signature 560 577 3.6E-93 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_15175 60ec33a7ce553100a1a0d2778e13278b 1086 PRINTS PR00702 Acriflavin resistance protein family signature 471 494 3.6E-93 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_15175 60ec33a7ce553100a1a0d2778e13278b 1086 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 3.6E-93 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_15175 60ec33a7ce553100a1a0d2778e13278b 1086 PRINTS PR00702 Acriflavin resistance protein family signature 393 417 3.6E-93 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_15175 60ec33a7ce553100a1a0d2778e13278b 1086 PRINTS PR00702 Acriflavin resistance protein family signature 629 643 3.6E-93 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_15175 60ec33a7ce553100a1a0d2778e13278b 1086 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 3.6E-93 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_15175 60ec33a7ce553100a1a0d2778e13278b 1086 PRINTS PR00702 Acriflavin resistance protein family signature 446 469 3.6E-93 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_15175 60ec33a7ce553100a1a0d2778e13278b 1086 PRINTS PR00702 Acriflavin resistance protein family signature 338 361 3.6E-93 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_15175 60ec33a7ce553100a1a0d2778e13278b 1086 Gene3D G3DSA:3.30.2090.10 729 817 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_15175 60ec33a7ce553100a1a0d2778e13278b 1086 Gene3D G3DSA:3.30.2090.10 181 277 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_15175 60ec33a7ce553100a1a0d2778e13278b 1086 SUPERFAMILY SSF82714 730 813 2.88E-18 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_15175 60ec33a7ce553100a1a0d2778e13278b 1086 SUPERFAMILY SSF82693 680 865 1.39E-25 T 11-10-2018 AMK58_15175 60ec33a7ce553100a1a0d2778e13278b 1086 Gene3D G3DSA:3.30.70.1440 677 874 0.0 T 11-10-2018 AMK58_15175 60ec33a7ce553100a1a0d2778e13278b 1086 Gene3D G3DSA:3.30.70.1320 135 334 0.0 T 11-10-2018 AMK58_15175 60ec33a7ce553100a1a0d2778e13278b 1086 SUPERFAMILY SSF82714 185 274 3.53E-21 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_15175 60ec33a7ce553100a1a0d2778e13278b 1086 SUPERFAMILY SSF82693 573 679 1.46E-23 T 11-10-2018 AMK58_15175 60ec33a7ce553100a1a0d2778e13278b 1086 Gene3D G3DSA:3.30.70.1430 575 676 0.0 T 11-10-2018 AMK58_15175 60ec33a7ce553100a1a0d2778e13278b 1086 SUPERFAMILY SSF82866 298 498 2.75E-49 T 11-10-2018 AMK58_15175 60ec33a7ce553100a1a0d2778e13278b 1086 SUPERFAMILY SSF82693 137 332 1.45E-25 T 11-10-2018 AMK58_15175 60ec33a7ce553100a1a0d2778e13278b 1086 Pfam PF00873 AcrB/AcrD/AcrF family 4 1036 0.0 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_27400 0b978626ce1b16c1e105f3ebbbd17c57 358 Gene3D G3DSA:3.40.50.2300 34 332 2.1E-134 T 11-10-2018 AMK58_27400 0b978626ce1b16c1e105f3ebbbd17c57 358 Gene3D G3DSA:3.40.50.2300 136 352 2.1E-134 T 11-10-2018 AMK58_27400 0b978626ce1b16c1e105f3ebbbd17c57 358 SUPERFAMILY SSF53822 31 344 3.73E-69 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMK58_27400 0b978626ce1b16c1e105f3ebbbd17c57 358 Pfam PF13407 Periplasmic binding protein domain 34 309 2.5E-63 T 11-10-2018 IPR025997 Periplasmic binding protein AMK58_23360 932c3413ffcac874db3b8c005b136531 536 SMART SM00862 21 96 2.7E-17 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_23360 932c3413ffcac874db3b8c005b136531 536 SUPERFAMILY SSF48452 285 505 6.64E-19 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_23360 932c3413ffcac874db3b8c005b136531 536 Gene3D G3DSA:1.25.40.10 235 512 1.5E-22 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_23360 932c3413ffcac874db3b8c005b136531 536 Pfam PF00486 Transcriptional regulatory protein, C terminal 22 96 3.5E-17 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_23360 932c3413ffcac874db3b8c005b136531 536 Gene3D G3DSA:1.10.10.10 3 100 9.0E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_23360 932c3413ffcac874db3b8c005b136531 536 SUPERFAMILY SSF46894 3 97 1.22E-20 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMK58_27370 6f56feadaffd8002479faf265cb343f4 516 ProSitePatterns PS00211 ABC transporters family signature. 410 424 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_27370 6f56feadaffd8002479faf265cb343f4 516 Gene3D G3DSA:3.40.50.300 264 506 1.5E-43 T 11-10-2018 AMK58_27370 6f56feadaffd8002479faf265cb343f4 516 Gene3D G3DSA:3.40.50.300 2 252 1.8E-57 T 11-10-2018 AMK58_27370 6f56feadaffd8002479faf265cb343f4 516 SMART SM00382 292 494 0.0026 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_27370 6f56feadaffd8002479faf265cb343f4 516 SMART SM00382 37 224 1.2E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_27370 6f56feadaffd8002479faf265cb343f4 516 Pfam PF00005 ABC transporter 28 177 2.2E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_27370 6f56feadaffd8002479faf265cb343f4 516 SUPERFAMILY SSF52540 11 235 3.55E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_27370 6f56feadaffd8002479faf265cb343f4 516 SUPERFAMILY SSF52540 276 495 5.77E-46 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_27370 6f56feadaffd8002479faf265cb343f4 516 Pfam PF00005 ABC transporter 286 437 3.4E-17 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_25245 5fcaf86d3585aac357c28c1e2c8eed94 340 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 330 2.9E-132 T 11-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_25245 5fcaf86d3585aac357c28c1e2c8eed94 340 SUPERFAMILY SSF55347 158 320 2.2E-69 T 11-10-2018 AMK58_25245 5fcaf86d3585aac357c28c1e2c8eed94 340 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 156 163 - T 11-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_25245 5fcaf86d3585aac357c28c1e2c8eed94 340 SMART SM00846 3 158 5.5E-97 T 11-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_25245 5fcaf86d3585aac357c28c1e2c8eed94 340 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 109 8.5E-38 T 11-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_25245 5fcaf86d3585aac357c28c1e2c8eed94 340 Gene3D G3DSA:3.30.360.10 157 321 7.5E-151 T 11-10-2018 AMK58_25245 5fcaf86d3585aac357c28c1e2c8eed94 340 Gene3D G3DSA:3.40.50.720 4 331 7.5E-151 T 11-10-2018 AMK58_25245 5fcaf86d3585aac357c28c1e2c8eed94 340 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 235 252 4.4E-38 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_25245 5fcaf86d3585aac357c28c1e2c8eed94 340 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 116 129 4.4E-38 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_25245 5fcaf86d3585aac357c28c1e2c8eed94 340 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 275 290 4.4E-38 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_25245 5fcaf86d3585aac357c28c1e2c8eed94 340 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 179 195 4.4E-38 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_25245 5fcaf86d3585aac357c28c1e2c8eed94 340 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 152 170 4.4E-38 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_25245 5fcaf86d3585aac357c28c1e2c8eed94 340 SUPERFAMILY SSF51735 1 177 1.75E-63 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_25245 5fcaf86d3585aac357c28c1e2c8eed94 340 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 163 319 2.1E-65 T 11-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_25245 5fcaf86d3585aac357c28c1e2c8eed94 340 PIRSF PIRSF000149 1 340 1.7E-138 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_26980 b702de29d43f6ed9e6763cebf0ed7a0c 294 Gene3D G3DSA:1.10.3130.10 23 169 4.8E-46 T 11-10-2018 AMK58_26980 b702de29d43f6ed9e6763cebf0ed7a0c 294 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 110 269 2.1E-72 T 11-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 AMK58_26980 b702de29d43f6ed9e6763cebf0ed7a0c 294 PIRSF PIRSF000441 103 291 8.2E-66 T 11-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 AMK58_26980 b702de29d43f6ed9e6763cebf0ed7a0c 294 SMART SM00971 36 140 3.2E-36 T 11-10-2018 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 AMK58_26980 b702de29d43f6ed9e6763cebf0ed7a0c 294 Pfam PF06426 Serine acetyltransferase, N-terminal 36 139 1.0E-31 T 11-10-2018 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 AMK58_26980 b702de29d43f6ed9e6763cebf0ed7a0c 294 Gene3D G3DSA:2.160.10.10 170 290 5.7E-36 T 11-10-2018 AMK58_26980 b702de29d43f6ed9e6763cebf0ed7a0c 294 SUPERFAMILY SSF51161 34 271 6.65E-58 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily AMK58_26980 b702de29d43f6ed9e6763cebf0ed7a0c 294 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 220 254 1.6E-6 T 11-10-2018 IPR001451 Hexapeptide repeat AMK58_06150 0ae9d64d308b24958a78c09462801b28 162 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 19 140 3.0E-52 T 11-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06150 0ae9d64d308b24958a78c09462801b28 162 Pfam PF12838 4Fe-4S dicluster domain 62 116 1.3E-12 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMK58_06150 0ae9d64d308b24958a78c09462801b28 162 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 102 113 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMK58_06150 0ae9d64d308b24958a78c09462801b28 162 SUPERFAMILY SSF54862 36 146 1.55E-28 T 11-10-2018 AMK58_06150 0ae9d64d308b24958a78c09462801b28 162 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 10 146 29.192 T 11-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06150 0ae9d64d308b24958a78c09462801b28 162 Gene3D G3DSA:3.30.70.3270 36 161 1.0E-43 T 11-10-2018 AMK58_28895 fde18a57d9b9c1b47033023a90855d53 517 Gene3D G3DSA:3.40.50.150 33 196 4.0E-21 T 11-10-2018 AMK58_28895 fde18a57d9b9c1b47033023a90855d53 517 SUPERFAMILY SSF53335 46 176 3.25E-24 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_28895 fde18a57d9b9c1b47033023a90855d53 517 Pfam PF13847 Methyltransferase domain 46 162 2.2E-14 T 11-10-2018 IPR025714 Methyltransferase domain AMK58_28895 fde18a57d9b9c1b47033023a90855d53 517 Pfam PF10119 Predicted methyltransferase regulatory domain 223 306 1.9E-29 T 11-10-2018 IPR018773 Methyltransferase regulatory domain, predicted AMK58_00520 9afa7b12ed9c27ba23a355c510d20304 182 PIRSF PIRSF039093 5 182 9.7E-83 T 11-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 AMK58_00520 9afa7b12ed9c27ba23a355c510d20304 182 Gene3D G3DSA:3.60.20.10 7 182 3.7E-67 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMK58_00520 9afa7b12ed9c27ba23a355c510d20304 182 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 11 182 39.27 T 11-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 AMK58_00520 9afa7b12ed9c27ba23a355c510d20304 182 SUPERFAMILY SSF56235 8 181 1.45E-56 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMK58_00520 9afa7b12ed9c27ba23a355c510d20304 182 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 12 182 8.8E-82 T 11-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 AMK58_00520 9afa7b12ed9c27ba23a355c510d20304 182 Pfam PF00227 Proteasome subunit 10 180 1.2E-19 T 11-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 AMK58_16790 ac1f07265d98efd9737e511170662069 586 SMART SM01016 5 94 1.3E-32 T 11-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AMK58_16790 ac1f07265d98efd9737e511170662069 586 Gene3D G3DSA:1.10.730.10 447 581 5.4E-145 T 11-10-2018 AMK58_16790 ac1f07265d98efd9737e511170662069 586 Gene3D G3DSA:3.40.50.620 124 446 5.4E-145 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_16790 ac1f07265d98efd9737e511170662069 586 Pfam PF05746 DALR anticodon binding domain 452 584 1.7E-31 T 11-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 AMK58_16790 ac1f07265d98efd9737e511170662069 586 SMART SM00836 452 584 9.3E-55 T 11-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 AMK58_16790 ac1f07265d98efd9737e511170662069 586 Hamap MF_00123 Arginine--tRNA ligase [argS]. 5 584 23.603 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AMK58_16790 ac1f07265d98efd9737e511170662069 586 Pfam PF00750 tRNA synthetases class I (R) 104 424 3.5E-14 T 11-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 AMK58_16790 ac1f07265d98efd9737e511170662069 586 SUPERFAMILY SSF47323 446 584 1.83E-33 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMK58_16790 ac1f07265d98efd9737e511170662069 586 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 12 583 1.7E-102 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AMK58_16790 ac1f07265d98efd9737e511170662069 586 SUPERFAMILY SSF55190 1 114 6.28E-22 T 11-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 AMK58_16790 ac1f07265d98efd9737e511170662069 586 Gene3D G3DSA:3.30.1360.70 4 111 5.5E-22 T 11-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 AMK58_16790 ac1f07265d98efd9737e511170662069 586 PRINTS PR01038 Arginyl-tRNA synthetase signature 123 138 5.7E-21 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AMK58_16790 ac1f07265d98efd9737e511170662069 586 PRINTS PR01038 Arginyl-tRNA synthetase signature 138 154 5.7E-21 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AMK58_16790 ac1f07265d98efd9737e511170662069 586 PRINTS PR01038 Arginyl-tRNA synthetase signature 162 175 5.7E-21 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AMK58_16790 ac1f07265d98efd9737e511170662069 586 PRINTS PR01038 Arginyl-tRNA synthetase signature 321 342 5.7E-21 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AMK58_16790 ac1f07265d98efd9737e511170662069 586 SUPERFAMILY SSF52374 116 463 6.97E-79 T 11-10-2018 AMK58_16790 ac1f07265d98efd9737e511170662069 586 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 9 94 8.9E-21 T 11-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AMK58_05290 374bbd607c3e63d5643c359bc8756ebb 601 Pfam PF08439 Oligopeptidase F 123 192 1.7E-20 T 11-10-2018 IPR013647 Oligopeptidase F, N-terminal domain AMK58_05290 374bbd607c3e63d5643c359bc8756ebb 601 SUPERFAMILY SSF55486 17 586 2.77E-115 T 11-10-2018 AMK58_05290 374bbd607c3e63d5643c359bc8756ebb 601 Gene3D G3DSA:1.10.1370.20 232 600 9.6E-114 T 11-10-2018 AMK58_05290 374bbd607c3e63d5643c359bc8756ebb 601 TIGRFAM TIGR02290 M3_fam_3: oligoendopeptidase, pepF/M3 family 20 599 6.1E-198 T 11-10-2018 IPR011977 Peptidase M3B, oligoendopeptidase-related clade 3 AMK58_05290 374bbd607c3e63d5643c359bc8756ebb 601 Gene3D G3DSA:1.20.140.70 32 180 1.5E-17 T 11-10-2018 AMK58_05290 374bbd607c3e63d5643c359bc8756ebb 601 Pfam PF01432 Peptidase family M3 345 587 1.5E-33 T 11-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 AMK58_17530 b8d376d3d923b2ab857ed23b0f3e183e 269 SUPERFAMILY SSF101386 2 105 5.56E-25 T 11-10-2018 AMK58_17530 b8d376d3d923b2ab857ed23b0f3e183e 269 Gene3D G3DSA:1.10.287.1080 135 266 1.0E-46 T 11-10-2018 AMK58_17530 b8d376d3d923b2ab857ed23b0f3e183e 269 TIGRFAM TIGR00444 mazG: MazG family protein 11 262 2.3E-95 T 11-10-2018 IPR011551 NTP pyrophosphohydrolase MazG AMK58_17530 b8d376d3d923b2ab857ed23b0f3e183e 269 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 28 101 4.3E-26 T 11-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core AMK58_17530 b8d376d3d923b2ab857ed23b0f3e183e 269 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 171 231 2.3E-8 T 11-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core AMK58_17530 b8d376d3d923b2ab857ed23b0f3e183e 269 Gene3D G3DSA:1.10.287.1080 1 126 2.6E-44 T 11-10-2018 AMK58_17530 b8d376d3d923b2ab857ed23b0f3e183e 269 SUPERFAMILY SSF101386 143 242 2.8E-24 T 11-10-2018 AMK58_19550 db5111cc768d28657bbc526405337f7c 301 Gene3D G3DSA:1.10.10.10 5 93 3.2E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_19550 db5111cc768d28657bbc526405337f7c 301 Pfam PF03466 LysR substrate binding domain 89 290 9.4E-39 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_19550 db5111cc768d28657bbc526405337f7c 301 Gene3D G3DSA:3.40.190.10 101 287 4.5E-60 T 11-10-2018 AMK58_19550 db5111cc768d28657bbc526405337f7c 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 1.2E-21 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_19550 db5111cc768d28657bbc526405337f7c 301 SUPERFAMILY SSF46785 3 82 5.69E-24 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_19550 db5111cc768d28657bbc526405337f7c 301 Gene3D G3DSA:3.40.190.10 162 260 4.5E-60 T 11-10-2018 AMK58_19550 db5111cc768d28657bbc526405337f7c 301 SUPERFAMILY SSF53850 90 292 6.15E-39 T 11-10-2018 AMK58_19550 db5111cc768d28657bbc526405337f7c 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 2.3E-11 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_19550 db5111cc768d28657bbc526405337f7c 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 2.3E-11 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_19550 db5111cc768d28657bbc526405337f7c 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 2.3E-11 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_17100 e31c241245de8c571724323cd47dc15f 387 Pfam PF00072 Response regulator receiver domain 268 378 2.2E-10 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_17100 e31c241245de8c571724323cd47dc15f 387 SUPERFAMILY SSF47384 9 89 4.12E-14 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_17100 e31c241245de8c571724323cd47dc15f 387 SMART SM00448 265 379 4.5E-13 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_17100 e31c241245de8c571724323cd47dc15f 387 Gene3D G3DSA:3.40.50.2300 258 387 1.4E-22 T 11-10-2018 AMK58_17100 e31c241245de8c571724323cd47dc15f 387 SMART SM00387 133 244 1.6E-29 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_17100 e31c241245de8c571724323cd47dc15f 387 PRINTS PR00344 Bacterial sensor protein C-terminal signature 228 241 5.4E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_17100 e31c241245de8c571724323cd47dc15f 387 PRINTS PR00344 Bacterial sensor protein C-terminal signature 169 183 5.4E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_17100 e31c241245de8c571724323cd47dc15f 387 PRINTS PR00344 Bacterial sensor protein C-terminal signature 204 222 5.4E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_17100 e31c241245de8c571724323cd47dc15f 387 PRINTS PR00344 Bacterial sensor protein C-terminal signature 187 197 5.4E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_17100 e31c241245de8c571724323cd47dc15f 387 SUPERFAMILY SSF52172 268 384 6.26E-22 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_17100 e31c241245de8c571724323cd47dc15f 387 SUPERFAMILY SSF55874 78 242 9.3E-39 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_17100 e31c241245de8c571724323cd47dc15f 387 SMART SM00388 24 89 5.9E-10 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_17100 e31c241245de8c571724323cd47dc15f 387 Gene3D G3DSA:3.30.565.10 87 242 4.4E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_17100 e31c241245de8c571724323cd47dc15f 387 Pfam PF00512 His Kinase A (phospho-acceptor) domain 24 89 1.0E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_17100 e31c241245de8c571724323cd47dc15f 387 Gene3D G3DSA:1.10.287.130 2 86 8.3E-15 T 11-10-2018 AMK58_17100 e31c241245de8c571724323cd47dc15f 387 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 134 243 1.3E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_15040 178add778880b98a04c51ec4c3a02146 420 SMART SM00388 34 99 6.1E-13 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_15040 178add778880b98a04c51ec4c3a02146 420 Pfam PF00072 Response regulator receiver domain 284 395 1.2E-10 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_15040 178add778880b98a04c51ec4c3a02146 420 SMART SM00387 144 260 1.1E-28 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_15040 178add778880b98a04c51ec4c3a02146 420 SUPERFAMILY SSF47384 18 99 1.79E-17 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_15040 178add778880b98a04c51ec4c3a02146 420 SMART SM00448 281 395 3.1E-15 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_15040 178add778880b98a04c51ec4c3a02146 420 SUPERFAMILY SSF55874 88 265 2.75E-40 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_15040 178add778880b98a04c51ec4c3a02146 420 PRINTS PR00344 Bacterial sensor protein C-terminal signature 185 199 7.8E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_15040 178add778880b98a04c51ec4c3a02146 420 PRINTS PR00344 Bacterial sensor protein C-terminal signature 244 257 7.8E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_15040 178add778880b98a04c51ec4c3a02146 420 PRINTS PR00344 Bacterial sensor protein C-terminal signature 220 238 7.8E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_15040 178add778880b98a04c51ec4c3a02146 420 PRINTS PR00344 Bacterial sensor protein C-terminal signature 203 213 7.8E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_15040 178add778880b98a04c51ec4c3a02146 420 Gene3D G3DSA:3.30.565.10 99 262 1.7E-39 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_15040 178add778880b98a04c51ec4c3a02146 420 Gene3D G3DSA:3.40.50.2300 276 412 7.1E-22 T 11-10-2018 AMK58_15040 178add778880b98a04c51ec4c3a02146 420 Gene3D G3DSA:1.10.287.130 8 97 7.3E-19 T 11-10-2018 AMK58_15040 178add778880b98a04c51ec4c3a02146 420 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 145 259 7.4E-23 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_15040 178add778880b98a04c51ec4c3a02146 420 Pfam PF00512 His Kinase A (phospho-acceptor) domain 34 99 5.6E-12 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_15040 178add778880b98a04c51ec4c3a02146 420 SUPERFAMILY SSF52172 281 401 1.34E-21 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_17860 3372bb4df7a5ed9250211239891bbc71 148 Gene3D G3DSA:3.90.940.10 1 93 2.8E-23 T 11-10-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 AMK58_17860 3372bb4df7a5ed9250211239891bbc71 148 SMART SM01409 8 60 1.0E-13 T 11-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 AMK58_17860 3372bb4df7a5ed9250211239891bbc71 148 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 56 5.8E-16 T 11-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMK58_17860 3372bb4df7a5ed9250211239891bbc71 148 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 61 15.993 T 11-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMK58_17860 3372bb4df7a5ed9250211239891bbc71 148 SUPERFAMILY SSF63562 1 81 2.88E-20 T 11-10-2018 IPR036161 RPB6/omega subunit-like superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 AMK58_17860 3372bb4df7a5ed9250211239891bbc71 148 Pfam PF01192 RNA polymerase Rpb6 8 58 5.7E-13 T 11-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 AMK58_16575 e770ff51ab5b19670503e8f0f85c3208 161 Pfam PF04972 BON domain 19 83 1.5E-10 T 11-10-2018 IPR007055 BON domain AMK58_16575 e770ff51ab5b19670503e8f0f85c3208 161 SUPERFAMILY SSF54106 108 159 1.24E-8 T 11-10-2018 AMK58_16575 e770ff51ab5b19670503e8f0f85c3208 161 Pfam PF01476 LysM domain 111 159 2.9E-13 T 11-10-2018 IPR018392 LysM domain AMK58_16575 e770ff51ab5b19670503e8f0f85c3208 161 Gene3D G3DSA:3.10.350.10 110 158 1.6E-15 T 11-10-2018 IPR036779 LysM domain superfamily AMK58_16575 e770ff51ab5b19670503e8f0f85c3208 161 SMART SM00257 110 159 3.4E-13 T 11-10-2018 IPR018392 LysM domain AMK58_28950 dc626fed14a76f112f9ca81b0c297238 745 Gene3D G3DSA:3.90.70.10 16 147 1.1E-20 T 11-10-2018 AMK58_28950 dc626fed14a76f112f9ca81b0c297238 745 Pfam PF00664 ABC transporter transmembrane region 175 434 3.4E-32 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMK58_28950 dc626fed14a76f112f9ca81b0c297238 745 SUPERFAMILY SSF90123 154 472 4.58E-52 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMK58_28950 dc626fed14a76f112f9ca81b0c297238 745 SMART SM00382 514 700 4.3E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_28950 dc626fed14a76f112f9ca81b0c297238 745 Pfam PF03412 Peptidase C39 family 21 145 2.8E-6 T 11-10-2018 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 AMK58_28950 dc626fed14a76f112f9ca81b0c297238 745 Gene3D G3DSA:3.40.50.300 475 728 7.5E-87 T 11-10-2018 AMK58_28950 dc626fed14a76f112f9ca81b0c297238 745 SUPERFAMILY SSF52540 481 724 5.95E-86 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_28950 dc626fed14a76f112f9ca81b0c297238 745 Gene3D G3DSA:1.20.1560.10 159 474 4.0E-54 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMK58_28950 dc626fed14a76f112f9ca81b0c297238 745 ProSitePatterns PS00211 ABC transporters family signature. 626 640 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_28950 dc626fed14a76f112f9ca81b0c297238 745 Pfam PF00005 ABC transporter 505 654 4.1E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_01200 ebd8d86c77a9e54f24a2a42051b02311 204 SUPERFAMILY SSF53335 12 198 2.89E-26 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_01200 ebd8d86c77a9e54f24a2a42051b02311 204 Pfam PF06080 Protein of unknown function (DUF938) 11 203 3.1E-71 T 11-10-2018 IPR010342 Protein of unknown function DUF938 AMK58_01200 ebd8d86c77a9e54f24a2a42051b02311 204 Gene3D G3DSA:3.40.50.150 6 203 8.4E-21 T 11-10-2018 AMK58_17980 f58f149136495c57e07b6ddffca9ab5e 200 Gene3D G3DSA:3.40.50.360 1 200 1.1E-80 T 11-10-2018 IPR029039 Flavoprotein-like superfamily AMK58_17980 f58f149136495c57e07b6ddffca9ab5e 200 SUPERFAMILY SSF52218 1 199 6.16E-64 T 11-10-2018 IPR029039 Flavoprotein-like superfamily AMK58_17980 f58f149136495c57e07b6ddffca9ab5e 200 Hamap MF_01017 NAD(P)H dehydrogenase (quinone). 1 200 49.915 T 11-10-2018 IPR037513 NAD(P)H dehydrogenase (quinone), prokaryotic GO:0003955|GO:0010181 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 AMK58_17980 f58f149136495c57e07b6ddffca9ab5e 200 TIGRFAM TIGR01755 flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 2 198 5.7E-102 T 11-10-2018 IPR010089 Flavoprotein WrbA-like GO:0003955|GO:0010181 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 AMK58_17980 f58f149136495c57e07b6ddffca9ab5e 200 Pfam PF03358 NADPH-dependent FMN reductase 13 142 5.2E-14 T 11-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AMK58_07020 d0040d251f1dab474135041fb7fd7142 437 Hamap MF_01202 D-amino acid dehydrogenase [dadA]. 1 411 48.59 T 11-10-2018 IPR023080 D-amino acid dehydrogenase DadA GO:0008718|GO:0019478|GO:0055114 AMK58_07020 d0040d251f1dab474135041fb7fd7142 437 SUPERFAMILY SSF54373 270 360 5.1E-17 T 11-10-2018 AMK58_07020 d0040d251f1dab474135041fb7fd7142 437 Gene3D G3DSA:3.50.50.60 107 405 6.1E-59 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_07020 d0040d251f1dab474135041fb7fd7142 437 Gene3D G3DSA:3.30.9.10 134 362 6.1E-59 T 11-10-2018 AMK58_07020 d0040d251f1dab474135041fb7fd7142 437 Pfam PF01266 FAD dependent oxidoreductase 2 397 1.8E-76 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMK58_07020 d0040d251f1dab474135041fb7fd7142 437 SUPERFAMILY SSF51905 1 419 2.98E-58 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_07020 d0040d251f1dab474135041fb7fd7142 437 Gene3D G3DSA:3.50.50.60 1 74 2.2E-12 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_06750 47d1c8ab5e583922dad906a80427def7 142 SMART SM00347 18 118 9.2E-18 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_06750 47d1c8ab5e583922dad906a80427def7 142 Pfam PF12802 MarR family 23 82 1.2E-11 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_06750 47d1c8ab5e583922dad906a80427def7 142 SUPERFAMILY SSF46785 3 133 3.34E-30 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_06750 47d1c8ab5e583922dad906a80427def7 142 ProSitePatterns PS01117 MarR-type HTH domain signature. 57 91 - T 11-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site AMK58_06750 47d1c8ab5e583922dad906a80427def7 142 PRINTS PR00598 Bacterial regulatory protein MarR family signature 59 74 1.3E-8 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_06750 47d1c8ab5e583922dad906a80427def7 142 PRINTS PR00598 Bacterial regulatory protein MarR family signature 108 128 1.3E-8 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_06750 47d1c8ab5e583922dad906a80427def7 142 PRINTS PR00598 Bacterial regulatory protein MarR family signature 78 94 1.3E-8 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_06750 47d1c8ab5e583922dad906a80427def7 142 Gene3D G3DSA:1.10.10.10 2 135 6.3E-31 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_00535 b0c5c2e8836ac10229abca06d70eee4d 513 Gene3D G3DSA:1.10.287.130 259 347 9.0E-23 T 11-10-2018 AMK58_00535 b0c5c2e8836ac10229abca06d70eee4d 513 SMART SM00091 17 83 2.4E-11 T 11-10-2018 IPR000014 PAS domain AMK58_00535 b0c5c2e8836ac10229abca06d70eee4d 513 SMART SM00091 144 210 9.3E-14 T 11-10-2018 IPR000014 PAS domain AMK58_00535 b0c5c2e8836ac10229abca06d70eee4d 513 SUPERFAMILY SSF55785 129 257 2.36E-26 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_00535 b0c5c2e8836ac10229abca06d70eee4d 513 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 396 507 4.6E-25 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_00535 b0c5c2e8836ac10229abca06d70eee4d 513 SMART SM00387 395 508 6.8E-38 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_00535 b0c5c2e8836ac10229abca06d70eee4d 513 Pfam PF00989 PAS fold 18 129 7.9E-13 T 11-10-2018 IPR013767 PAS fold GO:0006355 AMK58_00535 b0c5c2e8836ac10229abca06d70eee4d 513 Pfam PF00989 PAS fold 145 242 2.3E-11 T 11-10-2018 IPR013767 PAS fold GO:0006355 AMK58_00535 b0c5c2e8836ac10229abca06d70eee4d 513 SUPERFAMILY SSF55785 17 130 5.5E-23 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_00535 b0c5c2e8836ac10229abca06d70eee4d 513 Pfam PF00512 His Kinase A (phospho-acceptor) domain 281 349 2.0E-14 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_00535 b0c5c2e8836ac10229abca06d70eee4d 513 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 141 267 6.7E-25 T 11-10-2018 IPR000014 PAS domain AMK58_00535 b0c5c2e8836ac10229abca06d70eee4d 513 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 16 139 1.2E-23 T 11-10-2018 IPR000014 PAS domain AMK58_00535 b0c5c2e8836ac10229abca06d70eee4d 513 SMART SM00388 280 349 2.7E-16 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_00535 b0c5c2e8836ac10229abca06d70eee4d 513 Gene3D G3DSA:3.30.450.20 14 143 1.2E-23 T 11-10-2018 AMK58_00535 b0c5c2e8836ac10229abca06d70eee4d 513 Gene3D G3DSA:3.30.565.10 348 508 1.1E-44 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_00535 b0c5c2e8836ac10229abca06d70eee4d 513 SUPERFAMILY SSF55874 338 506 5.37E-45 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_00535 b0c5c2e8836ac10229abca06d70eee4d 513 Gene3D G3DSA:3.30.450.20 144 258 9.8E-31 T 11-10-2018 AMK58_00535 b0c5c2e8836ac10229abca06d70eee4d 513 PRINTS PR00344 Bacterial sensor protein C-terminal signature 492 505 3.8E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_00535 b0c5c2e8836ac10229abca06d70eee4d 513 PRINTS PR00344 Bacterial sensor protein C-terminal signature 451 461 3.8E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_00535 b0c5c2e8836ac10229abca06d70eee4d 513 PRINTS PR00344 Bacterial sensor protein C-terminal signature 433 447 3.8E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_00535 b0c5c2e8836ac10229abca06d70eee4d 513 PRINTS PR00344 Bacterial sensor protein C-terminal signature 468 486 3.8E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_00535 b0c5c2e8836ac10229abca06d70eee4d 513 SUPERFAMILY SSF47384 265 350 1.2E-18 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_04250 8d59e8cdd83bafe3c3477d7476976817 771 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 306 318 - T 11-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 AMK58_04250 8d59e8cdd83bafe3c3477d7476976817 771 SUPERFAMILY SSF52540 441 742 1.89E-75 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_04250 8d59e8cdd83bafe3c3477d7476976817 771 Gene3D G3DSA:1.10.1780.10 1 142 8.7E-40 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 AMK58_04250 8d59e8cdd83bafe3c3477d7476976817 771 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 537 555 5.5E-37 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 AMK58_04250 8d59e8cdd83bafe3c3477d7476976817 771 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 599 613 5.5E-37 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 AMK58_04250 8d59e8cdd83bafe3c3477d7476976817 771 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 566 584 5.5E-37 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 AMK58_04250 8d59e8cdd83bafe3c3477d7476976817 771 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 495 513 5.5E-37 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 AMK58_04250 8d59e8cdd83bafe3c3477d7476976817 771 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 522 540 - T 11-10-2018 IPR028299 ClpA/B, conserved site 2 AMK58_04250 8d59e8cdd83bafe3c3477d7476976817 771 Gene3D G3DSA:3.40.50.300 161 354 4.4E-65 T 11-10-2018 AMK58_04250 8d59e8cdd83bafe3c3477d7476976817 771 SUPERFAMILY SSF81923 1 141 1.44E-58 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 AMK58_04250 8d59e8cdd83bafe3c3477d7476976817 771 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 3 738 0.0 T 11-10-2018 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0016887|GO:0043335 AMK58_04250 8d59e8cdd83bafe3c3477d7476976817 771 Gene3D G3DSA:3.40.50.300 443 655 2.8E-78 T 11-10-2018 AMK58_04250 8d59e8cdd83bafe3c3477d7476976817 771 Pfam PF07724 AAA domain (Cdc48 subfamily) 490 651 3.6E-46 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMK58_04250 8d59e8cdd83bafe3c3477d7476976817 771 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 215 346 1.4E-11 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMK58_04250 8d59e8cdd83bafe3c3477d7476976817 771 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 13 62 7.0E-12 T 11-10-2018 IPR004176 Clp, N-terminal AMK58_04250 8d59e8cdd83bafe3c3477d7476976817 771 Gene3D G3DSA:1.10.8.60 657 761 5.2E-31 T 11-10-2018 AMK58_04250 8d59e8cdd83bafe3c3477d7476976817 771 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 657 737 4.1E-25 T 11-10-2018 IPR019489 Clp ATPase, C-terminal AMK58_04250 8d59e8cdd83bafe3c3477d7476976817 771 SUPERFAMILY SSF52540 171 427 1.6E-68 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_04250 8d59e8cdd83bafe3c3477d7476976817 771 SMART SM01086 657 746 8.6E-38 T 11-10-2018 IPR019489 Clp ATPase, C-terminal AMK58_04250 8d59e8cdd83bafe3c3477d7476976817 771 SMART SM00382 210 356 7.8E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_04250 8d59e8cdd83bafe3c3477d7476976817 771 SMART SM00382 491 658 3.3E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_04250 8d59e8cdd83bafe3c3477d7476976817 771 Gene3D G3DSA:1.10.8.60 355 442 1.7E-31 T 11-10-2018 AMK58_04505 e8f0731dc9c3158876d756855721d804 625 Gene3D G3DSA:1.10.287.950 229 521 4.1E-55 T 11-10-2018 AMK58_04505 e8f0731dc9c3158876d756855721d804 625 SMART SM00304 168 221 0.002 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_04505 e8f0731dc9c3158876d756855721d804 625 SMART SM00304 453 513 110.0 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_04505 e8f0731dc9c3158876d756855721d804 625 SMART SM00283 258 512 9.4E-44 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_04505 e8f0731dc9c3158876d756855721d804 625 SUPERFAMILY SSF141371 518 601 1.41E-6 T 11-10-2018 AMK58_04505 e8f0731dc9c3158876d756855721d804 625 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 340 480 1.6E-31 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_04505 e8f0731dc9c3158876d756855721d804 625 Gene3D G3DSA:1.20.1480.50 130 227 2.3E-13 T 11-10-2018 AMK58_04505 e8f0731dc9c3158876d756855721d804 625 Pfam PF07238 PilZ domain 520 604 2.7E-7 T 11-10-2018 IPR009875 PilZ domain GO:0035438 AMK58_04505 e8f0731dc9c3158876d756855721d804 625 SUPERFAMILY SSF58104 197 507 1.83E-59 T 11-10-2018 AMK58_04505 e8f0731dc9c3158876d756855721d804 625 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 286 315 5.1E-7 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_04505 e8f0731dc9c3158876d756855721d804 625 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 385 414 5.1E-7 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_04505 e8f0731dc9c3158876d756855721d804 625 Pfam PF00672 HAMP domain 170 214 6.1E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_10240 b951851be2e4aba8e5ed44ac82351e0f 153 Gene3D G3DSA:2.60.40.790 35 139 1.0E-21 T 11-10-2018 IPR008978 HSP20-like chaperone AMK58_10240 b951851be2e4aba8e5ed44ac82351e0f 153 SUPERFAMILY SSF49764 34 138 3.84E-20 T 11-10-2018 IPR008978 HSP20-like chaperone AMK58_10240 b951851be2e4aba8e5ed44ac82351e0f 153 Pfam PF00011 Hsp20/alpha crystallin family 44 138 1.4E-19 T 11-10-2018 IPR002068 Alpha crystallin/Hsp20 domain AMK58_25895 6b456f0853479a12984f6059d9c51a19 254 Pfam PF00440 Bacterial regulatory proteins, tetR family 45 91 4.9E-13 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_25895 6b456f0853479a12984f6059d9c51a19 254 SUPERFAMILY SSF46689 34 109 1.08E-16 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_25895 6b456f0853479a12984f6059d9c51a19 254 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 66 89 2.4E-5 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_25895 6b456f0853479a12984f6059d9c51a19 254 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 45 58 2.4E-5 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_25895 6b456f0853479a12984f6059d9c51a19 254 ProSitePatterns PS01081 TetR-type HTH domain signature. 57 87 - T 11-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMK58_25895 6b456f0853479a12984f6059d9c51a19 254 Gene3D G3DSA:1.10.357.10 43 241 1.4E-64 T 11-10-2018 AMK58_25895 6b456f0853479a12984f6059d9c51a19 254 SUPERFAMILY SSF48498 116 243 3.07E-30 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMK58_24205 ed20cb11a547d1f6e642e7bc409bb5b6 557 Pfam PF01266 FAD dependent oxidoreductase 17 231 9.4E-8 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMK58_24205 ed20cb11a547d1f6e642e7bc409bb5b6 557 SUPERFAMILY SSF51905 15 544 5.06E-46 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_24205 ed20cb11a547d1f6e642e7bc409bb5b6 557 Gene3D G3DSA:3.50.50.60 423 546 1.2E-15 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_24205 ed20cb11a547d1f6e642e7bc409bb5b6 557 Pfam PF05199 GMC oxidoreductase 405 534 3.9E-23 T 11-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 AMK58_03080 9754e52f4e05baaff81d826322c3df7b 793 Gene3D G3DSA:2.170.130.10 139 259 1.6E-22 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily AMK58_03080 9754e52f4e05baaff81d826322c3df7b 793 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 148 793 2.5E-106 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 AMK58_03080 9754e52f4e05baaff81d826322c3df7b 793 Pfam PF07715 TonB-dependent Receptor Plug Domain 146 241 1.4E-14 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain AMK58_03080 9754e52f4e05baaff81d826322c3df7b 793 Gene3D G3DSA:3.55.50.30 16 118 1.5E-23 T 11-10-2018 AMK58_03080 9754e52f4e05baaff81d826322c3df7b 793 SUPERFAMILY SSF56935 99 793 3.11E-99 T 11-10-2018 AMK58_03080 9754e52f4e05baaff81d826322c3df7b 793 SMART SM00965 47 98 1.4E-10 T 11-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 AMK58_03080 9754e52f4e05baaff81d826322c3df7b 793 Pfam PF00593 TonB dependent receptor 322 791 2.0E-36 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel AMK58_03080 9754e52f4e05baaff81d826322c3df7b 793 Gene3D G3DSA:2.40.170.20 260 793 1.2E-80 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily AMK58_25740 8b34d1ded633b18bf0964c7f21fe415e 329 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 50 287 4.8E-35 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 AMK58_25740 8b34d1ded633b18bf0964c7f21fe415e 329 SUPERFAMILY SSF53850 38 286 1.5E-10 T 11-10-2018 AMK58_25740 8b34d1ded633b18bf0964c7f21fe415e 329 Gene3D G3DSA:3.40.190.10 126 248 1.3E-69 T 11-10-2018 AMK58_25740 8b34d1ded633b18bf0964c7f21fe415e 329 Gene3D G3DSA:3.40.190.150 31 310 1.3E-69 T 11-10-2018 AMK58_25740 8b34d1ded633b18bf0964c7f21fe415e 329 PIRSF PIRSF017082 1 321 2.3E-68 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 AMK58_27310 d4913e3e0d9e8dc5ceec37e0368bb25b 177 Gene3D G3DSA:2.40.50.140 95 174 1.0E-18 T 11-10-2018 AMK58_27310 d4913e3e0d9e8dc5ceec37e0368bb25b 177 SMART SM00357 24 88 6.0E-8 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 AMK58_27310 d4913e3e0d9e8dc5ceec37e0368bb25b 177 SMART SM00357 113 177 7.7E-15 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 AMK58_27310 d4913e3e0d9e8dc5ceec37e0368bb25b 177 SUPERFAMILY SSF50249 112 176 2.14E-16 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_27310 d4913e3e0d9e8dc5ceec37e0368bb25b 177 SUPERFAMILY SSF50249 27 86 1.07E-13 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_27310 d4913e3e0d9e8dc5ceec37e0368bb25b 177 Pfam PF00313 'Cold-shock' DNA-binding domain 25 85 2.4E-12 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_27310 d4913e3e0d9e8dc5ceec37e0368bb25b 177 Pfam PF00313 'Cold-shock' DNA-binding domain 113 175 3.8E-17 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_27310 d4913e3e0d9e8dc5ceec37e0368bb25b 177 PRINTS PR00050 Cold shock protein signature 114 129 1.8E-8 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_27310 d4913e3e0d9e8dc5ceec37e0368bb25b 177 PRINTS PR00050 Cold shock protein signature 135 144 1.8E-8 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_27310 d4913e3e0d9e8dc5ceec37e0368bb25b 177 PRINTS PR00050 Cold shock protein signature 150 168 1.8E-8 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_27310 d4913e3e0d9e8dc5ceec37e0368bb25b 177 Gene3D G3DSA:2.40.50.140 24 86 2.5E-14 T 11-10-2018 AMK58_06550 46bb4812edbe7f2df7487d1f991d6872 259 Gene3D G3DSA:3.40.50.1820 7 259 1.8E-67 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_06550 46bb4812edbe7f2df7487d1f991d6872 259 SUPERFAMILY SSF53474 3 258 2.39E-55 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_06550 46bb4812edbe7f2df7487d1f991d6872 259 Pfam PF12697 Alpha/beta hydrolase family 21 253 6.2E-24 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_06550 46bb4812edbe7f2df7487d1f991d6872 259 PRINTS PR00412 Epoxide hydrolase signature 101 114 8.1E-9 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMK58_06550 46bb4812edbe7f2df7487d1f991d6872 259 PRINTS PR00412 Epoxide hydrolase signature 87 100 8.1E-9 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMK58_06550 46bb4812edbe7f2df7487d1f991d6872 259 PRINTS PR00412 Epoxide hydrolase signature 44 59 8.1E-9 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMK58_06550 46bb4812edbe7f2df7487d1f991d6872 259 PRINTS PR00412 Epoxide hydrolase signature 236 258 8.1E-9 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMK58_06550 46bb4812edbe7f2df7487d1f991d6872 259 PRINTS PR00111 Alpha/beta hydrolase fold signature 101 114 5.5E-9 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_06550 46bb4812edbe7f2df7487d1f991d6872 259 PRINTS PR00111 Alpha/beta hydrolase fold signature 87 100 5.5E-9 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_06550 46bb4812edbe7f2df7487d1f991d6872 259 PRINTS PR00111 Alpha/beta hydrolase fold signature 44 59 5.5E-9 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_06550 46bb4812edbe7f2df7487d1f991d6872 259 PRINTS PR00111 Alpha/beta hydrolase fold signature 206 220 5.5E-9 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_06985 82a3481f468290cbac30d62e5a77d750 250 Gene3D G3DSA:3.90.79.10 2 219 1.8E-55 T 11-10-2018 AMK58_06985 82a3481f468290cbac30d62e5a77d750 250 SUPERFAMILY SSF55811 4 181 1.82E-15 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMK58_23790 b0612ebb3daf520c180f608e69f31b53 387 SUPERFAMILY SSF141571 3 139 2.68E-32 T 11-10-2018 AMK58_23790 b0612ebb3daf520c180f608e69f31b53 387 Gene3D G3DSA:2.160.20.80 1 87 4.4E-21 T 11-10-2018 AMK58_23790 b0612ebb3daf520c180f608e69f31b53 387 Gene3D G3DSA:2.160.20.80 93 208 3.2E-27 T 11-10-2018 AMK58_23790 b0612ebb3daf520c180f608e69f31b53 387 Pfam PF13599 Pentapeptide repeats (9 copies) 240 302 2.3E-11 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_23790 b0612ebb3daf520c180f608e69f31b53 387 SUPERFAMILY SSF141571 231 381 6.97E-35 T 11-10-2018 AMK58_23790 b0612ebb3daf520c180f608e69f31b53 387 Gene3D G3DSA:2.160.20.80 211 316 3.5E-21 T 11-10-2018 AMK58_23790 b0612ebb3daf520c180f608e69f31b53 387 Gene3D G3DSA:2.160.20.80 325 387 2.4E-15 T 11-10-2018 AMK58_23790 b0612ebb3daf520c180f608e69f31b53 387 Pfam PF00805 Pentapeptide repeats (8 copies) 1 31 1.1E-4 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_23790 b0612ebb3daf520c180f608e69f31b53 387 Pfam PF00805 Pentapeptide repeats (8 copies) 114 152 4.2E-13 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_23790 b0612ebb3daf520c180f608e69f31b53 387 Pfam PF00805 Pentapeptide repeats (8 copies) 44 82 1.3E-9 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_23790 b0612ebb3daf520c180f608e69f31b53 387 Pfam PF00805 Pentapeptide repeats (8 copies) 330 368 6.3E-11 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_21630 9a435d9df994a1e8506221f35f6ac870 466 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 25 368 1.9E-40 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMK58_21630 9a435d9df994a1e8506221f35f6ac870 466 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 389 436 1.7E-5 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMK58_21630 9a435d9df994a1e8506221f35f6ac870 466 SUPERFAMILY SSF56601 18 438 3.07E-55 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMK58_21630 9a435d9df994a1e8506221f35f6ac870 466 Gene3D G3DSA:3.50.80.20 80 150 1.2E-15 T 11-10-2018 AMK58_21630 9a435d9df994a1e8506221f35f6ac870 466 Gene3D G3DSA:3.40.710.10 22 79 5.2E-6 T 11-10-2018 AMK58_21630 9a435d9df994a1e8506221f35f6ac870 466 Gene3D G3DSA:3.40.710.10 251 443 3.6E-28 T 11-10-2018 AMK58_21630 9a435d9df994a1e8506221f35f6ac870 466 TIGRFAM TIGR00666 PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 39 367 3.4E-34 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMK58_21630 9a435d9df994a1e8506221f35f6ac870 466 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 336 350 1.3E-11 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMK58_21630 9a435d9df994a1e8506221f35f6ac870 466 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 351 365 1.3E-11 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMK58_21630 9a435d9df994a1e8506221f35f6ac870 466 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 276 298 1.3E-11 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMK58_21630 9a435d9df994a1e8506221f35f6ac870 466 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 51 70 1.3E-11 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMK58_17690 a3d21655d2cd7104220171c979901ef5 520 Pfam PF00271 Helicase conserved C-terminal domain 229 337 3.9E-29 T 11-10-2018 IPR001650 Helicase, C-terminal AMK58_17690 a3d21655d2cd7104220171c979901ef5 520 Gene3D G3DSA:3.40.50.300 1 208 4.0E-78 T 11-10-2018 AMK58_17690 a3d21655d2cd7104220171c979901ef5 520 SMART SM00487 20 220 2.0E-65 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMK58_17690 a3d21655d2cd7104220171c979901ef5 520 SMART SM00490 256 337 8.5E-32 T 11-10-2018 IPR001650 Helicase, C-terminal AMK58_17690 a3d21655d2cd7104220171c979901ef5 520 Pfam PF00270 DEAD/DEAH box helicase 25 193 4.2E-52 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMK58_17690 a3d21655d2cd7104220171c979901ef5 520 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 151 159 - T 11-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site AMK58_17690 a3d21655d2cd7104220171c979901ef5 520 SUPERFAMILY SSF52540 73 350 6.4E-74 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_17690 a3d21655d2cd7104220171c979901ef5 520 Gene3D G3DSA:3.40.50.300 211 369 6.8E-48 T 11-10-2018 AMK58_06355 61953644fc5130818b2f34995696a49b 470 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 3 305 6.1E-92 T 11-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 AMK58_06355 61953644fc5130818b2f34995696a49b 470 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 2 465 31.152 T 11-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AMK58_06355 61953644fc5130818b2f34995696a49b 470 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 9 20 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMK58_06355 61953644fc5130818b2f34995696a49b 470 SUPERFAMILY SSF48163 300 464 3.27E-37 T 11-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AMK58_06355 61953644fc5130818b2f34995696a49b 470 Gene3D G3DSA:1.10.10.350 368 465 4.9E-27 T 11-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AMK58_06355 61953644fc5130818b2f34995696a49b 470 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 3 463 1.5E-152 T 11-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AMK58_06355 61953644fc5130818b2f34995696a49b 470 PRINTS PR00987 Glutamyl-tRNA synthetase signature 20 31 3.1E-26 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMK58_06355 61953644fc5130818b2f34995696a49b 470 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 48 3.1E-26 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMK58_06355 61953644fc5130818b2f34995696a49b 470 PRINTS PR00987 Glutamyl-tRNA synthetase signature 180 190 3.1E-26 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMK58_06355 61953644fc5130818b2f34995696a49b 470 PRINTS PR00987 Glutamyl-tRNA synthetase signature 6 18 3.1E-26 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMK58_06355 61953644fc5130818b2f34995696a49b 470 PRINTS PR00987 Glutamyl-tRNA synthetase signature 196 204 3.1E-26 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMK58_06355 61953644fc5130818b2f34995696a49b 470 Gene3D G3DSA:3.40.50.620 1 315 1.2E-128 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_06355 61953644fc5130818b2f34995696a49b 470 SUPERFAMILY SSF52374 3 299 1.15E-108 T 11-10-2018 AMK58_16485 46eb8df884e947f281dbb5c9c2b7214a 249 Gene3D G3DSA:1.10.10.10 135 248 7.8E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_16485 46eb8df884e947f281dbb5c9c2b7214a 249 Pfam PF00072 Response regulator receiver domain 12 119 6.2E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_16485 46eb8df884e947f281dbb5c9c2b7214a 249 SUPERFAMILY SSF46894 145 245 1.89E-19 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMK58_16485 46eb8df884e947f281dbb5c9c2b7214a 249 Gene3D G3DSA:3.40.50.2300 6 132 6.2E-32 T 11-10-2018 AMK58_16485 46eb8df884e947f281dbb5c9c2b7214a 249 SMART SM00862 167 244 3.3E-17 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_16485 46eb8df884e947f281dbb5c9c2b7214a 249 Pfam PF00486 Transcriptional regulatory protein, C terminal 170 244 8.6E-17 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_16485 46eb8df884e947f281dbb5c9c2b7214a 249 SUPERFAMILY SSF52172 10 130 6.4E-34 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_16485 46eb8df884e947f281dbb5c9c2b7214a 249 SMART SM00448 10 119 5.4E-34 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_00680 92d6123157df66774e941aa10315d958 84 Pfam PF01206 Sulfurtransferase TusA 11 83 4.4E-17 T 11-10-2018 IPR001455 TusA-like domain AMK58_00680 92d6123157df66774e941aa10315d958 84 SUPERFAMILY SSF64307 6 84 1.83E-16 T 11-10-2018 IPR036868 TusA-like domain superfamily AMK58_00680 92d6123157df66774e941aa10315d958 84 Gene3D G3DSA:3.30.110.40 6 83 2.6E-15 T 11-10-2018 IPR036868 TusA-like domain superfamily AMK58_19930 7cade7bc5c1ae0b6f7f271567f825c86 291 SUPERFAMILY SSF46785 7 116 7.37E-25 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_19930 7cade7bc5c1ae0b6f7f271567f825c86 291 Gene3D G3DSA:1.10.10.10 5 89 2.0E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_19930 7cade7bc5c1ae0b6f7f271567f825c86 291 SUPERFAMILY SSF53850 96 250 7.06E-25 T 11-10-2018 AMK58_19930 7cade7bc5c1ae0b6f7f271567f825c86 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 8.2E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_19930 7cade7bc5c1ae0b6f7f271567f825c86 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 8.2E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_19930 7cade7bc5c1ae0b6f7f271567f825c86 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 8.2E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_19930 7cade7bc5c1ae0b6f7f271567f825c86 291 Gene3D G3DSA:3.40.190.10 100 265 2.4E-58 T 11-10-2018 AMK58_19930 7cade7bc5c1ae0b6f7f271567f825c86 291 Gene3D G3DSA:3.40.190.10 166 259 2.4E-58 T 11-10-2018 AMK58_19930 7cade7bc5c1ae0b6f7f271567f825c86 291 Pfam PF03466 LysR substrate binding domain 95 246 3.7E-28 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_19930 7cade7bc5c1ae0b6f7f271567f825c86 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 69 1.7E-20 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_09510 1f32b0b7322367ecc474993c075359ef 309 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 21 294 1.5E-102 T 11-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 AMK58_09510 1f32b0b7322367ecc474993c075359ef 309 Gene3D G3DSA:1.10.357.140 29 178 1.6E-17 T 11-10-2018 AMK58_09510 1f32b0b7322367ecc474993c075359ef 309 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 18 298 20.212 T 11-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 AMK58_09510 1f32b0b7322367ecc474993c075359ef 309 Pfam PF01040 UbiA prenyltransferase family 35 279 2.4E-59 T 11-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 AMK58_09510 1f32b0b7322367ecc474993c075359ef 309 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 72 94 - T 11-10-2018 IPR030470 UbiA prenyltransferase conserved site AMK58_28540 c3eb9a2822176769501b2bf571ce2317 250 Pfam PF02602 Uroporphyrinogen-III synthase HemD 21 216 4.6E-23 T 11-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMK58_28540 c3eb9a2822176769501b2bf571ce2317 250 SUPERFAMILY SSF69618 7 244 1.31E-32 T 11-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMK58_28540 c3eb9a2822176769501b2bf571ce2317 250 Gene3D G3DSA:3.40.50.10090 5 115 6.8E-18 T 11-10-2018 AMK58_14870 f2c671ce2d30fb57824499fbfa354cc3 149 SUPERFAMILY SSF69118 4 145 2.99E-42 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMK58_14870 f2c671ce2d30fb57824499fbfa354cc3 149 Pfam PF02627 Carboxymuconolactone decarboxylase family 15 94 1.6E-17 T 11-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMK58_14870 f2c671ce2d30fb57824499fbfa354cc3 149 Gene3D G3DSA:1.20.1290.10 1 148 7.5E-46 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMK58_14870 f2c671ce2d30fb57824499fbfa354cc3 149 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 30 76 1.2E-12 T 11-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMK58_15170 2629c9441655399b952839818e03a6b6 230 SMART SM00895 92 213 5.8E-16 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_15170 2629c9441655399b952839818e03a6b6 230 Pfam PF07729 FCD domain 92 212 4.5E-23 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_15170 2629c9441655399b952839818e03a6b6 230 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 58 3.9E-9 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_15170 2629c9441655399b952839818e03a6b6 230 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 28 42 3.9E-9 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_15170 2629c9441655399b952839818e03a6b6 230 Gene3D G3DSA:1.10.10.10 3 70 1.6E-15 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_15170 2629c9441655399b952839818e03a6b6 230 SUPERFAMILY SSF48008 89 217 4.97E-22 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_15170 2629c9441655399b952839818e03a6b6 230 SMART SM00345 10 67 7.8E-10 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_15170 2629c9441655399b952839818e03a6b6 230 Pfam PF00392 Bacterial regulatory proteins, gntR family 8 64 1.1E-14 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_15170 2629c9441655399b952839818e03a6b6 230 SUPERFAMILY SSF46785 3 71 2.88E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_15170 2629c9441655399b952839818e03a6b6 230 Gene3D G3DSA:1.20.120.530 87 223 1.6E-24 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_09470 1f2a6f36567bd809b0c5f306ccc1ad5e 418 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 34 57 - T 11-10-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 AMK58_09470 1f2a6f36567bd809b0c5f306ccc1ad5e 418 Pfam PF00675 Insulinase (Peptidase family M16) 13 159 3.5E-42 T 11-10-2018 IPR011765 Peptidase M16, N-terminal AMK58_09470 1f2a6f36567bd809b0c5f306ccc1ad5e 418 Gene3D G3DSA:3.30.830.10 217 418 1.9E-64 T 11-10-2018 AMK58_09470 1f2a6f36567bd809b0c5f306ccc1ad5e 418 Gene3D G3DSA:3.30.830.10 3 216 1.9E-67 T 11-10-2018 AMK58_09470 1f2a6f36567bd809b0c5f306ccc1ad5e 418 Pfam PF05193 Peptidase M16 inactive domain 167 338 2.0E-38 T 11-10-2018 IPR007863 Peptidase M16, C-terminal AMK58_09470 1f2a6f36567bd809b0c5f306ccc1ad5e 418 SUPERFAMILY SSF63411 224 413 2.55E-50 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMK58_09470 1f2a6f36567bd809b0c5f306ccc1ad5e 418 SUPERFAMILY SSF63411 2 206 1.26E-57 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMK58_04760 b11a44889df2f76424456bc3d8a78ab4 625 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 584 601 5.7E-10 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMK58_04760 b11a44889df2f76424456bc3d8a78ab4 625 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 601 621 5.7E-10 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMK58_04760 b11a44889df2f76424456bc3d8a78ab4 625 Pfam PF00158 Sigma-54 interaction domain 206 372 1.2E-72 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AMK58_04760 b11a44889df2f76424456bc3d8a78ab4 625 Pfam PF02954 Bacterial regulatory protein, Fis family 586 618 8.6E-10 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMK58_04760 b11a44889df2f76424456bc3d8a78ab4 625 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 229 242 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AMK58_04760 b11a44889df2f76424456bc3d8a78ab4 625 Gene3D G3DSA:3.30.450.40 7 183 4.7E-47 T 11-10-2018 IPR029016 GAF-like domain superfamily AMK58_04760 b11a44889df2f76424456bc3d8a78ab4 625 Gene3D G3DSA:1.10.8.60 377 450 3.6E-21 T 11-10-2018 AMK58_04760 b11a44889df2f76424456bc3d8a78ab4 625 SUPERFAMILY SSF52540 204 445 5.05E-73 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_04760 b11a44889df2f76424456bc3d8a78ab4 625 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 291 306 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AMK58_04760 b11a44889df2f76424456bc3d8a78ab4 625 SUPERFAMILY SSF55781 10 170 2.62E-24 T 11-10-2018 AMK58_04760 b11a44889df2f76424456bc3d8a78ab4 625 TIGRFAM TIGR01817 nifA: Nif-specific regulatory protein 12 462 7.2E-181 T 11-10-2018 IPR010113 Nif-specific regulatory protein GO:0003700|GO:0006355|GO:0009399 AMK58_04760 b11a44889df2f76424456bc3d8a78ab4 625 Gene3D G3DSA:3.40.50.300 192 376 4.1E-69 T 11-10-2018 AMK58_04760 b11a44889df2f76424456bc3d8a78ab4 625 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 417 426 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site AMK58_04760 b11a44889df2f76424456bc3d8a78ab4 625 Pfam PF13185 GAF domain 28 171 1.5E-15 T 11-10-2018 IPR003018 GAF domain GO:0005515 AMK58_04760 b11a44889df2f76424456bc3d8a78ab4 625 SMART SM00065 29 181 8.7E-31 T 11-10-2018 IPR003018 GAF domain GO:0005515 AMK58_04760 b11a44889df2f76424456bc3d8a78ab4 625 Gene3D G3DSA:1.10.10.60 573 625 4.2E-9 T 11-10-2018 AMK58_04760 b11a44889df2f76424456bc3d8a78ab4 625 SMART SM00382 225 376 1.6E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_05165 3193131cba45474917457fcbc24ed233 197 SUPERFAMILY SSF52507 6 188 7.72E-62 T 11-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 AMK58_05165 3193131cba45474917457fcbc24ed233 197 Gene3D G3DSA:3.40.50.1950 5 195 1.2E-77 T 11-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 AMK58_05165 3193131cba45474917457fcbc24ed233 197 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 6 186 6.9E-73 T 11-10-2018 IPR004507 Flavin prenyltransferase UbiX-like AMK58_05165 3193131cba45474917457fcbc24ed233 197 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 5 188 37.267 T 11-10-2018 IPR004507 Flavin prenyltransferase UbiX-like AMK58_05165 3193131cba45474917457fcbc24ed233 197 Pfam PF02441 Flavoprotein 6 167 1.5E-24 T 11-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 AMK58_09360 750b28e71542e8dff14f60cc0fb3fe18 331 SUPERFAMILY SSF51735 121 290 1.74E-32 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_09360 750b28e71542e8dff14f60cc0fb3fe18 331 Gene3D G3DSA:3.40.50.720 129 297 1.9E-113 T 11-10-2018 AMK58_09360 750b28e71542e8dff14f60cc0fb3fe18 331 SMART SM00829 19 327 1.3E-6 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMK58_09360 750b28e71542e8dff14f60cc0fb3fe18 331 Pfam PF00107 Zinc-binding dehydrogenase 163 274 5.6E-9 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMK58_09360 750b28e71542e8dff14f60cc0fb3fe18 331 SUPERFAMILY SSF50129 6 146 1.28E-37 T 11-10-2018 IPR011032 GroES-like superfamily AMK58_09360 750b28e71542e8dff14f60cc0fb3fe18 331 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 32 92 2.5E-6 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMK58_09360 750b28e71542e8dff14f60cc0fb3fe18 331 Gene3D G3DSA:3.90.180.10 23 327 1.9E-113 T 11-10-2018 AMK58_09360 750b28e71542e8dff14f60cc0fb3fe18 331 TIGRFAM TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family 7 329 1.3E-121 T 11-10-2018 IPR014188 Acrylyl-CoA reductase AcuI AMK58_07200 f5c5f241c5317e7630cadb00c3798d46 512 PRINTS PR00834 HtrA/DegQ protease family signature 130 142 7.6E-55 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMK58_07200 f5c5f241c5317e7630cadb00c3798d46 512 PRINTS PR00834 HtrA/DegQ protease family signature 192 216 7.6E-55 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMK58_07200 f5c5f241c5317e7630cadb00c3798d46 512 PRINTS PR00834 HtrA/DegQ protease family signature 334 346 7.6E-55 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMK58_07200 f5c5f241c5317e7630cadb00c3798d46 512 PRINTS PR00834 HtrA/DegQ protease family signature 226 243 7.6E-55 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMK58_07200 f5c5f241c5317e7630cadb00c3798d46 512 PRINTS PR00834 HtrA/DegQ protease family signature 248 265 7.6E-55 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMK58_07200 f5c5f241c5317e7630cadb00c3798d46 512 PRINTS PR00834 HtrA/DegQ protease family signature 151 171 7.6E-55 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMK58_07200 f5c5f241c5317e7630cadb00c3798d46 512 Gene3D G3DSA:2.30.42.10 289 397 5.2E-28 T 11-10-2018 AMK58_07200 f5c5f241c5317e7630cadb00c3798d46 512 Gene3D G3DSA:2.40.10.120 46 287 8.3E-81 T 11-10-2018 AMK58_07200 f5c5f241c5317e7630cadb00c3798d46 512 SUPERFAMILY SSF50494 46 291 1.17E-63 T 11-10-2018 IPR009003 Peptidase S1, PA clan AMK58_07200 f5c5f241c5317e7630cadb00c3798d46 512 Gene3D G3DSA:2.30.42.60 402 512 1.4E-16 T 11-10-2018 AMK58_07200 f5c5f241c5317e7630cadb00c3798d46 512 SMART SM00228 413 498 3.2E-6 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMK58_07200 f5c5f241c5317e7630cadb00c3798d46 512 SMART SM00228 294 376 2.6E-12 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMK58_07200 f5c5f241c5317e7630cadb00c3798d46 512 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 48 503 7.1E-147 T 11-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 AMK58_07200 f5c5f241c5317e7630cadb00c3798d46 512 SUPERFAMILY SSF50156 252 377 2.5E-24 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 AMK58_07200 f5c5f241c5317e7630cadb00c3798d46 512 SUPERFAMILY SSF50156 413 507 6.31E-14 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 AMK58_07200 f5c5f241c5317e7630cadb00c3798d46 512 Pfam PF13365 Trypsin-like peptidase domain 121 255 7.1E-34 T 11-10-2018 AMK58_07200 f5c5f241c5317e7630cadb00c3798d46 512 Pfam PF13180 PDZ domain 414 504 2.0E-9 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMK58_07200 f5c5f241c5317e7630cadb00c3798d46 512 Pfam PF13180 PDZ domain 294 385 7.0E-16 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMK58_24215 783a30a346ba3c8923b9124d79afb9de 215 ProSitePatterns PS00622 LuxR-type HTH domain signature. 165 192 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_24215 783a30a346ba3c8923b9124d79afb9de 215 SMART SM00421 148 205 9.2E-23 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_24215 783a30a346ba3c8923b9124d79afb9de 215 Gene3D G3DSA:3.40.50.2300 1 122 4.9E-45 T 11-10-2018 AMK58_24215 783a30a346ba3c8923b9124d79afb9de 215 Pfam PF00072 Response regulator receiver domain 3 112 4.4E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_24215 783a30a346ba3c8923b9124d79afb9de 215 SMART SM00448 1 112 7.4E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_24215 783a30a346ba3c8923b9124d79afb9de 215 SUPERFAMILY SSF52172 1 124 1.2E-32 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_24215 783a30a346ba3c8923b9124d79afb9de 215 Gene3D G3DSA:1.10.10.10 143 209 1.3E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_24215 783a30a346ba3c8923b9124d79afb9de 215 SUPERFAMILY SSF46894 140 211 3.06E-21 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMK58_24215 783a30a346ba3c8923b9124d79afb9de 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 165 1.9E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_24215 783a30a346ba3c8923b9124d79afb9de 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 193 1.9E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_24215 783a30a346ba3c8923b9124d79afb9de 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 181 1.9E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_24215 783a30a346ba3c8923b9124d79afb9de 215 Pfam PF00196 Bacterial regulatory proteins, luxR family 149 205 1.3E-22 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_11805 d392950a9f96340ea463cdb97a60263e 293 PRINTS PR00412 Epoxide hydrolase signature 114 127 1.0E-8 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMK58_11805 d392950a9f96340ea463cdb97a60263e 293 PRINTS PR00412 Epoxide hydrolase signature 100 113 1.0E-8 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMK58_11805 d392950a9f96340ea463cdb97a60263e 293 PRINTS PR00412 Epoxide hydrolase signature 268 290 1.0E-8 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMK58_11805 d392950a9f96340ea463cdb97a60263e 293 PRINTS PR00412 Epoxide hydrolase signature 32 50 1.0E-8 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMK58_11805 d392950a9f96340ea463cdb97a60263e 293 SUPERFAMILY SSF53474 2 292 4.55E-76 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_11805 d392950a9f96340ea463cdb97a60263e 293 Pfam PF00561 alpha/beta hydrolase fold 26 246 2.1E-24 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_11805 d392950a9f96340ea463cdb97a60263e 293 Gene3D G3DSA:3.40.50.1820 1 292 3.0E-87 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_05095 eddce2ee20f756884a1bce76357f2ca3 466 SUPERFAMILY SSF48557 7 466 1.02E-164 T 11-10-2018 IPR008948 L-Aspartase-like GO:0003824 AMK58_05095 eddce2ee20f756884a1bce76357f2ca3 466 PRINTS PR00145 Argininosuccinate lyase family signature 320 336 8.9E-8 T 11-10-2018 AMK58_05095 eddce2ee20f756884a1bce76357f2ca3 466 PRINTS PR00145 Argininosuccinate lyase family signature 178 198 8.9E-8 T 11-10-2018 AMK58_05095 eddce2ee20f756884a1bce76357f2ca3 466 PRINTS PR00145 Argininosuccinate lyase family signature 136 158 8.9E-8 T 11-10-2018 AMK58_05095 eddce2ee20f756884a1bce76357f2ca3 466 Pfam PF10415 Fumarase C C-terminus 411 463 1.4E-27 T 11-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMK58_05095 eddce2ee20f756884a1bce76357f2ca3 466 Gene3D G3DSA:1.20.200.10 142 409 5.6E-123 T 11-10-2018 AMK58_05095 eddce2ee20f756884a1bce76357f2ca3 466 PRINTS PR00149 Fumarate lyase superfamily signature 320 336 8.3E-37 T 11-10-2018 IPR000362 Fumarate lyase family AMK58_05095 eddce2ee20f756884a1bce76357f2ca3 466 PRINTS PR00149 Fumarate lyase superfamily signature 137 155 8.3E-37 T 11-10-2018 IPR000362 Fumarate lyase family AMK58_05095 eddce2ee20f756884a1bce76357f2ca3 466 PRINTS PR00149 Fumarate lyase superfamily signature 274 301 8.3E-37 T 11-10-2018 IPR000362 Fumarate lyase family AMK58_05095 eddce2ee20f756884a1bce76357f2ca3 466 PRINTS PR00149 Fumarate lyase superfamily signature 183 201 8.3E-37 T 11-10-2018 IPR000362 Fumarate lyase family AMK58_05095 eddce2ee20f756884a1bce76357f2ca3 466 Gene3D G3DSA:1.10.40.30 411 466 1.5E-30 T 11-10-2018 AMK58_05095 eddce2ee20f756884a1bce76357f2ca3 466 Hamap MF_00743 Fumarate hydratase class II [fumC]. 7 465 92.804 T 11-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMK58_05095 eddce2ee20f756884a1bce76357f2ca3 466 Gene3D G3DSA:1.10.275.10 8 141 5.4E-58 T 11-10-2018 IPR024083 Fumarase/histidase, N-terminal AMK58_05095 eddce2ee20f756884a1bce76357f2ca3 466 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 7 464 3.9E-237 T 11-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMK58_05095 eddce2ee20f756884a1bce76357f2ca3 466 Pfam PF00206 Lyase 15 345 9.3E-119 T 11-10-2018 IPR022761 Fumarate lyase, N-terminal AMK58_05095 eddce2ee20f756884a1bce76357f2ca3 466 ProSitePatterns PS00163 Fumarate lyases signature. 320 329 - T 11-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 AMK58_19395 c78fc596f28dff97f9a88c27bbaa54d8 1153 Pfam PF02463 RecF/RecN/SMC N terminal domain 4 1136 8.7E-57 T 11-10-2018 IPR003395 RecF/RecN/SMC, N-terminal AMK58_19395 c78fc596f28dff97f9a88c27bbaa54d8 1153 Gene3D G3DSA:1.20.5.340 736 842 1.6E-5 T 11-10-2018 AMK58_19395 c78fc596f28dff97f9a88c27bbaa54d8 1153 SUPERFAMILY SSF52540 3 1142 7.14E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_19395 c78fc596f28dff97f9a88c27bbaa54d8 1153 Gene3D G3DSA:3.40.50.300 891 1152 6.0E-46 T 11-10-2018 AMK58_19395 c78fc596f28dff97f9a88c27bbaa54d8 1153 Gene3D G3DSA:3.40.50.300 3 280 5.1E-42 T 11-10-2018 AMK58_19395 c78fc596f28dff97f9a88c27bbaa54d8 1153 PIRSF PIRSF005719 538 1152 7.4E-115 T 11-10-2018 IPR024704 Structural maintenance of chromosomes protein AMK58_19395 c78fc596f28dff97f9a88c27bbaa54d8 1153 PIRSF PIRSF005719 1 545 4.1E-105 T 11-10-2018 IPR024704 Structural maintenance of chromosomes protein AMK58_19395 c78fc596f28dff97f9a88c27bbaa54d8 1153 Hamap MF_01894 Chromosome partition protein Smc [smc]. 1 1145 20.739 T 11-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 AMK58_19395 c78fc596f28dff97f9a88c27bbaa54d8 1153 SMART SM00968 507 596 0.0014 T 11-10-2018 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 AMK58_19395 c78fc596f28dff97f9a88c27bbaa54d8 1153 SUPERFAMILY SSF75553 479 645 3.79E-6 T 11-10-2018 IPR036277 SMCs flexible hinge superfamily GO:0005515|GO:0005524|GO:0005694|GO:0051276 AMK58_28050 656c10ad04bdf00d1f52c5839b8cb21a 404 SUPERFAMILY SSF89796 5 395 3.53E-131 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily AMK58_28050 656c10ad04bdf00d1f52c5839b8cb21a 404 Gene3D G3DSA:3.40.50.10540 6 389 1.2E-124 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily AMK58_28050 656c10ad04bdf00d1f52c5839b8cb21a 404 Pfam PF02515 CoA-transferase family III 6 371 4.6E-128 T 11-10-2018 IPR003673 CoA-transferase family III GO:0003824 AMK58_28050 656c10ad04bdf00d1f52c5839b8cb21a 404 Gene3D G3DSA:3.30.1540.10 227 324 1.2E-124 T 11-10-2018 AMK58_05800 253fd8e7773020739f252298834b7531 132 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 13 129 1.7E-58 T 11-10-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_05800 253fd8e7773020739f252298834b7531 132 PIRSF PIRSF002131 1 132 1.8E-54 T 11-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 AMK58_05800 253fd8e7773020739f252298834b7531 132 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 3 132 33.485 T 11-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 AMK58_05800 253fd8e7773020739f252298834b7531 132 Gene3D G3DSA:3.30.420.80 5 132 2.1E-55 T 11-10-2018 IPR036967 Ribosomal protein S11 superfamily GO:0003735|GO:0005840|GO:0006412 AMK58_05800 253fd8e7773020739f252298834b7531 132 ProSitePatterns PS00054 Ribosomal protein S11 signature. 100 122 - T 11-10-2018 IPR018102 Ribosomal S11, conserved site AMK58_05800 253fd8e7773020739f252298834b7531 132 Pfam PF00411 Ribosomal protein S11 22 131 1.1E-51 T 11-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 AMK58_05800 253fd8e7773020739f252298834b7531 132 SUPERFAMILY SSF53137 17 132 3.71E-50 T 11-10-2018 AMK58_24595 16cba00c6b32fcd96f4f25b05a6c8ba0 444 SMART SM00984 333 433 7.3E-30 T 11-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AMK58_24595 16cba00c6b32fcd96f4f25b05a6c8ba0 444 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 19 429 1.7E-128 T 11-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 AMK58_24595 16cba00c6b32fcd96f4f25b05a6c8ba0 444 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 215 305 1.8E-28 T 11-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AMK58_24595 16cba00c6b32fcd96f4f25b05a6c8ba0 444 SUPERFAMILY SSF51735 19 208 3.33E-47 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_24595 16cba00c6b32fcd96f4f25b05a6c8ba0 444 PIRSF PIRSF500136 7 443 1.1E-145 T 11-10-2018 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 AMK58_24595 16cba00c6b32fcd96f4f25b05a6c8ba0 444 Gene3D G3DSA:3.40.50.720 4 209 8.3E-63 T 11-10-2018 AMK58_24595 16cba00c6b32fcd96f4f25b05a6c8ba0 444 SUPERFAMILY SSF48179 214 311 8.84E-30 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMK58_24595 16cba00c6b32fcd96f4f25b05a6c8ba0 444 Gene3D G3DSA:3.40.50.720 214 442 6.3E-65 T 11-10-2018 AMK58_24595 16cba00c6b32fcd96f4f25b05a6c8ba0 444 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 18 193 2.7E-42 T 11-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AMK58_24595 16cba00c6b32fcd96f4f25b05a6c8ba0 444 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 333 431 2.6E-20 T 11-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AMK58_24595 16cba00c6b32fcd96f4f25b05a6c8ba0 444 SUPERFAMILY SSF52413 322 433 1.22E-25 T 11-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 AMK58_24595 16cba00c6b32fcd96f4f25b05a6c8ba0 444 PIRSF PIRSF000124 17 440 1.8E-64 T 11-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 AMK58_20905 cb967a9a9e96a22c2041e3527978d78e 315 PIRSF PIRSF005261 5 314 2.8E-81 T 11-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 AMK58_20905 cb967a9a9e96a22c2041e3527978d78e 315 Pfam PF01430 Hsp33 protein 12 303 1.9E-83 T 11-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 AMK58_20905 cb967a9a9e96a22c2041e3527978d78e 315 SUPERFAMILY SSF118352 256 311 1.29E-18 T 11-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 AMK58_20905 cb967a9a9e96a22c2041e3527978d78e 315 Gene3D G3DSA:3.90.1280.10 256 314 5.3E-21 T 11-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 AMK58_20905 cb967a9a9e96a22c2041e3527978d78e 315 SUPERFAMILY SSF64397 11 264 3.53E-63 T 11-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 AMK58_20905 cb967a9a9e96a22c2041e3527978d78e 315 Gene3D G3DSA:3.55.30.10 8 197 2.3E-63 T 11-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 AMK58_20905 cb967a9a9e96a22c2041e3527978d78e 315 Gene3D G3DSA:1.10.287.480 206 255 2.5E-8 T 11-10-2018 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily AMK58_12010 b2c5a918250df68d6fe4f57b44b850ff 1066 Hamap MF_01902 Error-prone DNA polymerase [dnaE2]. 4 1066 13.941 T 11-10-2018 IPR023073 DNA polymerase, error-prone GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMK58_12010 b2c5a918250df68d6fe4f57b44b850ff 1066 SMART SM00481 5 72 4.4E-14 T 11-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal AMK58_12010 b2c5a918250df68d6fe4f57b44b850ff 1066 Pfam PF02811 PHP domain 6 122 2.0E-9 T 11-10-2018 IPR004013 PHP domain GO:0003824 AMK58_12010 b2c5a918250df68d6fe4f57b44b850ff 1066 Pfam PF14579 Helix-hairpin-helix motif 770 875 1.3E-21 T 11-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMK58_12010 b2c5a918250df68d6fe4f57b44b850ff 1066 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 5 878 3.1E-153 T 11-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMK58_12010 b2c5a918250df68d6fe4f57b44b850ff 1066 SUPERFAMILY SSF89550 12 108 6.28E-7 T 11-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 AMK58_12010 b2c5a918250df68d6fe4f57b44b850ff 1066 Gene3D G3DSA:3.20.20.140 1 251 1.8E-59 T 11-10-2018 AMK58_12010 b2c5a918250df68d6fe4f57b44b850ff 1066 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 274 696 4.2E-149 T 11-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMK58_01265 8cc5765a95bb85fff6ba0b9dde285e17 355 Pfam PF01409 tRNA synthetases class II core domain (F) 90 338 1.3E-103 T 11-10-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 AMK58_01265 8cc5765a95bb85fff6ba0b9dde285e17 355 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 38 338 1.8E-102 T 11-10-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 AMK58_01265 8cc5765a95bb85fff6ba0b9dde285e17 355 Gene3D G3DSA:3.30.930.10 6 341 9.4E-117 T 11-10-2018 AMK58_01265 8cc5765a95bb85fff6ba0b9dde285e17 355 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 18 85 6.4E-23 T 11-10-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 AMK58_01265 8cc5765a95bb85fff6ba0b9dde285e17 355 SUPERFAMILY SSF46589 11 97 2.77E-20 T 11-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 AMK58_01265 8cc5765a95bb85fff6ba0b9dde285e17 355 SUPERFAMILY SSF55681 90 340 5.97E-79 T 11-10-2018 AMK58_01265 8cc5765a95bb85fff6ba0b9dde285e17 355 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 6 339 47.111 T 11-10-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 AMK58_23780 f8760cf3463a2b3bc57b57efc7e11480 664 SMART SM00283 299 553 1.9E-44 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_23780 f8760cf3463a2b3bc57b57efc7e11480 664 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 364 520 5.7E-30 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_23780 f8760cf3463a2b3bc57b57efc7e11480 664 Gene3D G3DSA:1.10.8.500 213 258 3.5E-10 T 11-10-2018 AMK58_23780 f8760cf3463a2b3bc57b57efc7e11480 664 SMART SM00304 209 268 0.19 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_23780 f8760cf3463a2b3bc57b57efc7e11480 664 SMART SM00304 494 550 29.0 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_23780 f8760cf3463a2b3bc57b57efc7e11480 664 SUPERFAMILY SSF58104 237 548 3.27E-57 T 11-10-2018 AMK58_23780 f8760cf3463a2b3bc57b57efc7e11480 664 SUPERFAMILY SSF103190 80 174 3.14E-11 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily AMK58_23780 f8760cf3463a2b3bc57b57efc7e11480 664 Pfam PF17202 Single cache domain 3 80 181 3.3E-33 T 11-10-2018 IPR033463 Single cache domain 3 AMK58_23780 f8760cf3463a2b3bc57b57efc7e11480 664 Pfam PF07238 PilZ domain 561 644 9.1E-9 T 11-10-2018 IPR009875 PilZ domain GO:0035438 AMK58_23780 f8760cf3463a2b3bc57b57efc7e11480 664 Gene3D G3DSA:1.10.287.950 267 562 1.0E-52 T 11-10-2018 AMK58_23780 f8760cf3463a2b3bc57b57efc7e11480 664 SUPERFAMILY SSF141371 560 612 7.26E-5 T 11-10-2018 AMK58_03470 482da34c15e36e874d38def03d2b9ae9 905 PRINTS PR00344 Bacterial sensor protein C-terminal signature 690 704 6.2E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_03470 482da34c15e36e874d38def03d2b9ae9 905 PRINTS PR00344 Bacterial sensor protein C-terminal signature 750 763 6.2E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_03470 482da34c15e36e874d38def03d2b9ae9 905 PRINTS PR00344 Bacterial sensor protein C-terminal signature 726 744 6.2E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_03470 482da34c15e36e874d38def03d2b9ae9 905 PRINTS PR00344 Bacterial sensor protein C-terminal signature 708 718 6.2E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_03470 482da34c15e36e874d38def03d2b9ae9 905 Gene3D G3DSA:1.10.287.130 499 600 2.1E-13 T 11-10-2018 AMK58_03470 482da34c15e36e874d38def03d2b9ae9 905 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 647 764 1.4E-18 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_03470 482da34c15e36e874d38def03d2b9ae9 905 SUPERFAMILY SSF55785 345 476 1.68E-23 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_03470 482da34c15e36e874d38def03d2b9ae9 905 Pfam PF12860 PAS fold 249 353 2.6E-24 T 11-10-2018 AMK58_03470 482da34c15e36e874d38def03d2b9ae9 905 Pfam PF12860 PAS fold 116 230 4.9E-19 T 11-10-2018 AMK58_03470 482da34c15e36e874d38def03d2b9ae9 905 SMART SM00091 110 171 76.0 T 11-10-2018 IPR000014 PAS domain AMK58_03470 482da34c15e36e874d38def03d2b9ae9 905 SMART SM00091 360 426 6.0E-5 T 11-10-2018 IPR000014 PAS domain AMK58_03470 482da34c15e36e874d38def03d2b9ae9 905 SMART SM00091 243 311 1.9 T 11-10-2018 IPR000014 PAS domain AMK58_03470 482da34c15e36e874d38def03d2b9ae9 905 SUPERFAMILY SSF55785 101 224 3.14E-9 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_03470 482da34c15e36e874d38def03d2b9ae9 905 Gene3D G3DSA:3.30.565.10 607 763 3.9E-31 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_03470 482da34c15e36e874d38def03d2b9ae9 905 SMART SM00387 646 766 1.0E-25 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_03470 482da34c15e36e874d38def03d2b9ae9 905 Gene3D G3DSA:3.30.450.20 320 359 1.4E-5 T 11-10-2018 AMK58_03470 482da34c15e36e874d38def03d2b9ae9 905 SMART SM00388 537 602 8.3E-14 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_03470 482da34c15e36e874d38def03d2b9ae9 905 Pfam PF00512 His Kinase A (phospho-acceptor) domain 537 602 6.9E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_03470 482da34c15e36e874d38def03d2b9ae9 905 SUPERFAMILY SSF55874 593 764 4.71E-36 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_03470 482da34c15e36e874d38def03d2b9ae9 905 SUPERFAMILY SSF55785 230 346 2.62E-8 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_03470 482da34c15e36e874d38def03d2b9ae9 905 SUPERFAMILY SSF52172 787 904 1.05E-21 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_03470 482da34c15e36e874d38def03d2b9ae9 905 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 356 485 4.2E-10 T 11-10-2018 IPR000014 PAS domain AMK58_03470 482da34c15e36e874d38def03d2b9ae9 905 Gene3D G3DSA:3.40.50.2300 779 905 4.6E-20 T 11-10-2018 AMK58_03470 482da34c15e36e874d38def03d2b9ae9 905 Gene3D G3DSA:3.30.450.20 234 307 3.2E-6 T 11-10-2018 AMK58_03470 482da34c15e36e874d38def03d2b9ae9 905 SMART SM00448 788 900 1.4E-14 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_03470 482da34c15e36e874d38def03d2b9ae9 905 Pfam PF00072 Response regulator receiver domain 790 899 9.5E-14 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_03470 482da34c15e36e874d38def03d2b9ae9 905 Pfam PF08448 PAS fold 367 479 6.8E-17 T 11-10-2018 IPR013656 PAS fold-4 AMK58_03470 482da34c15e36e874d38def03d2b9ae9 905 Gene3D G3DSA:3.30.450.20 97 233 1.4E-9 T 11-10-2018 AMK58_03470 482da34c15e36e874d38def03d2b9ae9 905 Gene3D G3DSA:3.30.450.20 360 494 4.5E-22 T 11-10-2018 AMK58_03470 482da34c15e36e874d38def03d2b9ae9 905 SUPERFAMILY SSF47384 522 602 1.45E-12 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1112 1501 3.4E-106 T 11-10-2018 IPR010071 Amino acid adenylation domain AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 3214 3607 4.7E-109 T 11-10-2018 IPR010071 Amino acid adenylation domain AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 2162 2552 1.3E-113 T 11-10-2018 IPR010071 Amino acid adenylation domain AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 ProSitePatterns PS00012 Phosphopantetheine attachment site. 3723 3738 - T 11-10-2018 IPR006162 Phosphopantetheine attachment site AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 SUPERFAMILY SSF56801 2109 2650 1.96E-141 T 11-10-2018 AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 SUPERFAMILY SSF56801 1064 1602 1.15E-139 T 11-10-2018 AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 SUPERFAMILY SSF52777 800 1055 2.11E-32 T 11-10-2018 AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 ProSitePatterns PS00455 Putative AMP-binding domain signature. 187 198 - T 11-10-2018 IPR020845 AMP-binding, conserved site AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 Gene3D G3DSA:3.30.300.30 2523 2624 1.9E-28 T 11-10-2018 AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 Pfam PF00550 Phosphopantetheine attachment site 542 604 2.7E-5 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 Pfam PF00550 Phosphopantetheine attachment site 2641 2703 7.3E-10 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 Pfam PF00550 Phosphopantetheine attachment site 3700 3759 2.2E-9 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 Pfam PF00550 Phosphopantetheine attachment site 1591 1652 1.5E-12 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 SUPERFAMILY SSF52777 2897 3157 6.34E-36 T 11-10-2018 AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 Gene3D G3DSA:3.30.300.30 1471 1577 4.1E-28 T 11-10-2018 AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 SUPERFAMILY SSF51735 3826 4096 2.39E-27 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 SUPERFAMILY SSF52777 1847 2101 1.67E-35 T 11-10-2018 AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 SUPERFAMILY SSF52777 621 813 1.33E-22 T 11-10-2018 AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 ProSitePatterns PS00455 Putative AMP-binding domain signature. 3339 3350 - T 11-10-2018 IPR020845 AMP-binding, conserved site AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 Gene3D G3DSA:3.30.300.30 3578 3683 6.3E-31 T 11-10-2018 AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 SUPERFAMILY SSF56801 3179 3710 9.81E-144 T 11-10-2018 AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 Gene3D G3DSA:3.30.300.30 427 528 5.6E-22 T 11-10-2018 AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 Gene3D G3DSA:3.30.559.30 798 1053 1.2E-60 T 11-10-2018 AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 SUPERFAMILY SSF56801 28 548 3.27E-129 T 11-10-2018 AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 Gene3D G3DSA:3.30.559.10 2723 3095 3.3E-68 T 11-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 Pfam PF00668 Condensation domain 2723 3148 1.0E-47 T 11-10-2018 IPR001242 Condensation domain AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 Pfam PF00668 Condensation domain 1694 2088 2.0E-45 T 11-10-2018 IPR001242 Condensation domain AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 Pfam PF00668 Condensation domain 621 1053 9.7E-37 T 11-10-2018 IPR001242 Condensation domain AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 SUPERFAMILY SSF52777 1690 1841 5.34E-25 T 11-10-2018 AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 Pfam PF13193 AMP-binding enzyme C-terminal domain 3591 3667 3.1E-9 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 Pfam PF13193 AMP-binding enzyme C-terminal domain 2536 2612 3.1E-10 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 Pfam PF13193 AMP-binding enzyme C-terminal domain 1485 1561 2.7E-9 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 Pfam PF13193 AMP-binding enzyme C-terminal domain 440 510 3.7E-5 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 SUPERFAMILY SSF47336 3691 3759 2.75E-13 T 11-10-2018 IPR036736 ACP-like superfamily AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 SUPERFAMILY SSF47336 2632 2704 1.31E-15 T 11-10-2018 IPR036736 ACP-like superfamily AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 Gene3D G3DSA:3.30.559.30 2893 3153 3.3E-68 T 11-10-2018 AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 SUPERFAMILY SSF52777 2723 2909 1.67E-26 T 11-10-2018 AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 SUPERFAMILY SSF47336 534 605 3.4E-11 T 11-10-2018 IPR036736 ACP-like superfamily AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 SUPERFAMILY SSF47336 1584 1654 1.3E-14 T 11-10-2018 IPR036736 ACP-like superfamily AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 Gene3D G3DSA:3.30.559.10 1694 2046 4.4E-69 T 11-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2663 2678 - T 11-10-2018 IPR006162 Phosphopantetheine attachment site AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 Gene3D G3DSA:3.30.559.30 1845 2090 4.4E-69 T 11-10-2018 AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1230 1241 - T 11-10-2018 IPR020845 AMP-binding, conserved site AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 Gene3D G3DSA:3.30.559.10 621 997 1.2E-60 T 11-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 ProSitePatterns PS00455 Putative AMP-binding domain signature. 2283 2294 - T 11-10-2018 IPR020845 AMP-binding, conserved site AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 Pfam PF07993 Male sterility protein 3828 4071 1.9E-37 T 11-10-2018 IPR013120 Male sterility, NAD-binding Reactome: R-HSA-8848584 AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 Pfam PF00501 AMP-binding enzyme 3196 3583 1.8E-86 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 Pfam PF00501 AMP-binding enzyme 2147 2527 1.2E-88 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 Pfam PF00501 AMP-binding enzyme 1091 1476 2.8E-87 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 Pfam PF00501 AMP-binding enzyme 34 432 9.8E-81 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1613 1628 - T 11-10-2018 IPR006162 Phosphopantetheine attachment site AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 Gene3D G3DSA:1.10.1200.10 3684 3771 7.4E-19 T 11-10-2018 IPR036736 ACP-like superfamily AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 Gene3D G3DSA:1.10.1200.10 2625 2710 4.1E-22 T 11-10-2018 IPR036736 ACP-like superfamily AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 Gene3D G3DSA:3.40.50.720 3793 4194 2.1E-63 T 11-10-2018 AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 Gene3D G3DSA:1.10.1200.10 1578 1660 3.4E-22 T 11-10-2018 IPR036736 ACP-like superfamily AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 Gene3D G3DSA:1.10.1200.10 529 611 4.0E-17 T 11-10-2018 IPR036736 ACP-like superfamily AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 SMART SM00823 Phosphopantetheine attachment site 1590 1658 4.5E-5 T 11-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 SMART SM00823 Phosphopantetheine attachment site 540 608 0.047 T 11-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 SMART SM00823 Phosphopantetheine attachment site 2639 2708 0.0014 T 11-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 SMART SM00823 Phosphopantetheine attachment site 3699 3766 0.0015 T 11-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 Gene3D G3DSA:3.40.50.12780 2133 2522 2.0E-113 T 11-10-2018 AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 Gene3D G3DSA:3.40.50.12780 3184 3577 3.1E-110 T 11-10-2018 AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 Gene3D G3DSA:3.40.50.12780 1080 1470 7.6E-113 T 11-10-2018 AMK58_23735 2394e93ee78a749e0f00ea9458961b60 4196 Gene3D G3DSA:3.40.50.12780 24 426 1.3E-102 T 11-10-2018 AMK58_12755 e663db9db050fd66cd62ea38d15a29d9 161 Gene3D G3DSA:3.30.420.10 50 158 2.3E-5 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMK58_12755 e663db9db050fd66cd62ea38d15a29d9 161 SUPERFAMILY SSF53098 12 154 2.5E-7 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMK58_16355 0693853e2bf0f64a5ce669a597ef6cb0 882 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 697 731 - T 11-10-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 AMK58_16355 0693853e2bf0f64a5ce669a597ef6cb0 882 Pfam PF12607 Protein of unknown function (DUF3772) 145 198 1.7E-11 T 11-10-2018 IPR022249 Domain of unknown function DUF3772 AMK58_16355 0693853e2bf0f64a5ce669a597ef6cb0 882 Pfam PF00924 Mechanosensitive ion channel 629 824 2.4E-52 T 11-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 AMK58_16355 0693853e2bf0f64a5ce669a597ef6cb0 882 Gene3D G3DSA:2.30.30.60 683 732 8.0E-14 T 11-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily AMK58_16355 0693853e2bf0f64a5ce669a597ef6cb0 882 SUPERFAMILY SSF82689 736 834 1.31E-24 T 11-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 AMK58_16355 0693853e2bf0f64a5ce669a597ef6cb0 882 SUPERFAMILY SSF50182 667 733 5.89E-18 T 11-10-2018 IPR010920 LSM domain superfamily AMK58_16355 0693853e2bf0f64a5ce669a597ef6cb0 882 SUPERFAMILY SSF82861 583 666 1.57E-11 T 11-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 AMK58_16355 0693853e2bf0f64a5ce669a597ef6cb0 882 Gene3D G3DSA:3.30.70.100 735 828 4.6E-20 T 11-10-2018 AMK58_04640 99940ed72bfa3e73573ea59053fa6114 402 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 103 121 4.4E-12 T 11-10-2018 AMK58_04640 99940ed72bfa3e73573ea59053fa6114 402 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 4.4E-12 T 11-10-2018 AMK58_04640 99940ed72bfa3e73573ea59053fa6114 402 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 156 174 4.4E-12 T 11-10-2018 AMK58_04640 99940ed72bfa3e73573ea59053fa6114 402 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 282 300 6.0E-7 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMK58_04640 99940ed72bfa3e73573ea59053fa6114 402 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 4 26 6.0E-7 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMK58_04640 99940ed72bfa3e73573ea59053fa6114 402 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 152 176 6.0E-7 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMK58_04640 99940ed72bfa3e73573ea59053fa6114 402 Gene3D G3DSA:3.50.50.100 1 387 1.9E-81 T 11-10-2018 AMK58_04640 99940ed72bfa3e73573ea59053fa6114 402 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 313 1.0E-42 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMK58_04640 99940ed72bfa3e73573ea59053fa6114 402 SUPERFAMILY SSF51905 2 329 3.24E-29 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_07070 70c7e7d1e1b61db18a6c103c1f4e831f 569 Gene3D G3DSA:2.30.40.10 5 482 1.0E-300 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMK58_07070 70c7e7d1e1b61db18a6c103c1f4e831f 569 ProSitePatterns PS00145 Urease active site. 319 335 - T 11-10-2018 IPR017950 Urease active site GO:0009039 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMK58_07070 70c7e7d1e1b61db18a6c103c1f4e831f 569 TIGRFAM TIGR01792 urease_alph: urease, alpha subunit 4 569 1.8E-300 T 11-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMK58_07070 70c7e7d1e1b61db18a6c103c1f4e831f 569 Hamap MF_01953 Urease subunit alpha [ureC]. 3 569 57.737 T 11-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMK58_07070 70c7e7d1e1b61db18a6c103c1f4e831f 569 Pfam PF00449 Urease alpha-subunit, N-terminal domain 4 121 5.2E-55 T 11-10-2018 IPR011612 Urease alpha-subunit, N-terminal domain KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMK58_07070 70c7e7d1e1b61db18a6c103c1f4e831f 569 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 429 442 3.5E-34 T 11-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMK58_07070 70c7e7d1e1b61db18a6c103c1f4e831f 569 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 403 418 3.5E-34 T 11-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMK58_07070 70c7e7d1e1b61db18a6c103c1f4e831f 569 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 297 314 3.5E-34 T 11-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMK58_07070 70c7e7d1e1b61db18a6c103c1f4e831f 569 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 336 352 3.5E-34 T 11-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMK58_07070 70c7e7d1e1b61db18a6c103c1f4e831f 569 Gene3D G3DSA:3.20.20.140 131 569 1.0E-300 T 11-10-2018 AMK58_07070 70c7e7d1e1b61db18a6c103c1f4e831f 569 SUPERFAMILY SSF51338 427 479 8.92E-6 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMK58_07070 70c7e7d1e1b61db18a6c103c1f4e831f 569 SUPERFAMILY SSF51556 131 569 2.82E-203 T 11-10-2018 IPR032466 Metal-dependent hydrolase AMK58_07070 70c7e7d1e1b61db18a6c103c1f4e831f 569 ProSitePatterns PS01120 Urease nickel ligands signature. 129 142 - T 11-10-2018 IPR029754 Urease nickel binding site GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMK58_07070 70c7e7d1e1b61db18a6c103c1f4e831f 569 Pfam PF01979 Amidohydrolase family 127 455 1.1E-83 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AMK58_07070 70c7e7d1e1b61db18a6c103c1f4e831f 569 SUPERFAMILY SSF51338 4 179 7.0E-62 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMK58_15105 7daddd837e26df5f2f61566b3afc11a6 300 Gene3D G3DSA:3.40.190.290 92 291 1.8E-64 T 11-10-2018 AMK58_15105 7daddd837e26df5f2f61566b3afc11a6 300 Pfam PF03466 LysR substrate binding domain 88 293 2.9E-47 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_15105 7daddd837e26df5f2f61566b3afc11a6 300 SUPERFAMILY SSF46785 4 87 3.14E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_15105 7daddd837e26df5f2f61566b3afc11a6 300 SUPERFAMILY SSF53850 89 296 1.63E-47 T 11-10-2018 AMK58_15105 7daddd837e26df5f2f61566b3afc11a6 300 Gene3D G3DSA:1.10.10.10 3 91 9.2E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_15105 7daddd837e26df5f2f61566b3afc11a6 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.6E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_15105 7daddd837e26df5f2f61566b3afc11a6 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.6E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_15105 7daddd837e26df5f2f61566b3afc11a6 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.6E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_15105 7daddd837e26df5f2f61566b3afc11a6 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 63 5.6E-21 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_03285 2c94246daf12156d2c86700a66745829 146 PIRSF PIRSF000027 5 146 5.8E-29 T 11-10-2018 IPR012127 Cytochrome c prime GO:0005506|GO:0009055|GO:0020037|GO:0042597 AMK58_03285 2c94246daf12156d2c86700a66745829 146 Gene3D G3DSA:1.20.120.10 25 146 2.7E-32 T 11-10-2018 AMK58_03285 2c94246daf12156d2c86700a66745829 146 PRINTS PR00608 Class II cytochrome C signature 133 144 1.3E-7 T 11-10-2018 IPR015984 Cytochrome c prime, subgroup AMK58_03285 2c94246daf12156d2c86700a66745829 146 PRINTS PR00608 Class II cytochrome C signature 110 133 1.3E-7 T 11-10-2018 IPR015984 Cytochrome c prime, subgroup AMK58_03285 2c94246daf12156d2c86700a66745829 146 SUPERFAMILY SSF47175 27 146 6.18E-29 T 11-10-2018 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 AMK58_03285 2c94246daf12156d2c86700a66745829 146 Pfam PF01322 Cytochrome C' 28 144 2.7E-30 T 11-10-2018 IPR002321 Cytochrome c, class II GO:0005506|GO:0009055|GO:0020037 AMK58_26605 03982a8cef00cdc0b5544e89dc9569eb 576 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 497 572 7.1E-21 T 11-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_26605 03982a8cef00cdc0b5544e89dc9569eb 576 Pfam PF10531 SLBB domain 410 458 1.2E-8 T 11-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_26605 03982a8cef00cdc0b5544e89dc9569eb 576 Gene3D G3DSA:3.40.50.11540 228 397 2.7E-69 T 11-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_26605 03982a8cef00cdc0b5544e89dc9569eb 576 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 333 348 - T 11-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_26605 03982a8cef00cdc0b5544e89dc9569eb 576 SUPERFAMILY SSF142984 407 490 5.75E-21 T 11-10-2018 AMK58_26605 03982a8cef00cdc0b5544e89dc9569eb 576 Gene3D G3DSA:3.10.20.600 398 492 1.0E-25 T 11-10-2018 AMK58_26605 03982a8cef00cdc0b5544e89dc9569eb 576 SMART SM00928 495 540 2.6E-15 T 11-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_26605 03982a8cef00cdc0b5544e89dc9569eb 576 SUPERFAMILY SSF52833 35 199 2.46E-33 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_26605 03982a8cef00cdc0b5544e89dc9569eb 576 Gene3D G3DSA:3.40.30.10 110 181 1.7E-10 T 11-10-2018 AMK58_26605 03982a8cef00cdc0b5544e89dc9569eb 576 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 508 519 - T 11-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_26605 03982a8cef00cdc0b5544e89dc9569eb 576 SUPERFAMILY SSF140490 492 573 1.23E-24 T 11-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_26605 03982a8cef00cdc0b5544e89dc9569eb 576 Gene3D G3DSA:1.20.1440.230 493 576 5.4E-22 T 11-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_26605 03982a8cef00cdc0b5544e89dc9569eb 576 SUPERFAMILY SSF142019 189 405 3.66E-72 T 11-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_26605 03982a8cef00cdc0b5544e89dc9569eb 576 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 226 384 2.6E-43 T 11-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_26605 03982a8cef00cdc0b5544e89dc9569eb 576 Gene3D G3DSA:1.10.10.1590 35 102 1.8E-6 T 11-10-2018 AMK58_26605 03982a8cef00cdc0b5544e89dc9569eb 576 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 43 180 6.1E-24 T 11-10-2018 AMK58_28705 087d5785c3deafd12498906aaf650bdb 449 SUPERFAMILY SSF81442 4 441 3.01E-91 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_28705 087d5785c3deafd12498906aaf650bdb 449 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 182 238 - T 11-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_28705 087d5785c3deafd12498906aaf650bdb 449 Gene3D G3DSA:1.20.210.10 1 440 2.3E-130 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_28705 087d5785c3deafd12498906aaf650bdb 449 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 7 416 3.6E-81 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_27830 087d5785c3deafd12498906aaf650bdb 449 SUPERFAMILY SSF81442 4 441 3.01E-91 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_27830 087d5785c3deafd12498906aaf650bdb 449 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 182 238 - T 11-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_27830 087d5785c3deafd12498906aaf650bdb 449 Gene3D G3DSA:1.20.210.10 1 440 2.3E-130 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_27830 087d5785c3deafd12498906aaf650bdb 449 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 7 416 3.6E-81 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_27480 a87f63ca49d7f993cb42ecd34aa27df6 1025 SUPERFAMILY SSF82714 699 784 1.44E-19 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_27480 a87f63ca49d7f993cb42ecd34aa27df6 1025 Gene3D G3DSA:3.30.2090.10 698 786 4.0E-290 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_27480 a87f63ca49d7f993cb42ecd34aa27df6 1025 Gene3D G3DSA:3.30.70.1430 40 794 4.0E-290 T 11-10-2018 AMK58_27480 a87f63ca49d7f993cb42ecd34aa27df6 1025 PRINTS PR00702 Acriflavin resistance protein family signature 540 557 1.1E-80 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_27480 a87f63ca49d7f993cb42ecd34aa27df6 1025 PRINTS PR00702 Acriflavin resistance protein family signature 329 352 1.1E-80 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_27480 a87f63ca49d7f993cb42ecd34aa27df6 1025 PRINTS PR00702 Acriflavin resistance protein family signature 437 460 1.1E-80 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_27480 a87f63ca49d7f993cb42ecd34aa27df6 1025 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.1E-80 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_27480 a87f63ca49d7f993cb42ecd34aa27df6 1025 PRINTS PR00702 Acriflavin resistance protein family signature 603 617 1.1E-80 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_27480 a87f63ca49d7f993cb42ecd34aa27df6 1025 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 1.1E-80 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_27480 a87f63ca49d7f993cb42ecd34aa27df6 1025 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 1.1E-80 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_27480 a87f63ca49d7f993cb42ecd34aa27df6 1025 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.1E-80 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_27480 a87f63ca49d7f993cb42ecd34aa27df6 1025 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 1.1E-80 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_27480 a87f63ca49d7f993cb42ecd34aa27df6 1025 SUPERFAMILY SSF82714 183 265 1.44E-16 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_27480 a87f63ca49d7f993cb42ecd34aa27df6 1025 Pfam PF00873 AcrB/AcrD/AcrF family 4 1004 4.3E-273 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_27480 a87f63ca49d7f993cb42ecd34aa27df6 1025 Gene3D G3DSA:1.20.1640.10 501 1001 4.0E-290 T 11-10-2018 AMK58_27480 a87f63ca49d7f993cb42ecd34aa27df6 1025 Gene3D G3DSA:3.30.70.1430 555 647 4.0E-290 T 11-10-2018 AMK58_27480 a87f63ca49d7f993cb42ecd34aa27df6 1025 Gene3D G3DSA:3.30.2090.10 178 268 4.0E-290 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_27480 a87f63ca49d7f993cb42ecd34aa27df6 1025 SUPERFAMILY SSF82693 42 131 9.42E-25 T 11-10-2018 AMK58_27480 a87f63ca49d7f993cb42ecd34aa27df6 1025 SUPERFAMILY SSF82866 291 489 3.92E-51 T 11-10-2018 AMK58_27480 a87f63ca49d7f993cb42ecd34aa27df6 1025 Gene3D G3DSA:1.20.1640.10 10 500 4.0E-290 T 11-10-2018 AMK58_27480 a87f63ca49d7f993cb42ecd34aa27df6 1025 SUPERFAMILY SSF82693 137 323 4.19E-21 T 11-10-2018 AMK58_27480 a87f63ca49d7f993cb42ecd34aa27df6 1025 Gene3D G3DSA:3.30.70.1440 648 843 4.0E-290 T 11-10-2018 AMK58_27480 a87f63ca49d7f993cb42ecd34aa27df6 1025 SUPERFAMILY SSF82693 553 650 1.15E-19 T 11-10-2018 AMK58_27480 a87f63ca49d7f993cb42ecd34aa27df6 1025 SUPERFAMILY SSF82866 782 1006 3.66E-42 T 11-10-2018 AMK58_27480 a87f63ca49d7f993cb42ecd34aa27df6 1025 Gene3D G3DSA:3.30.70.1320 134 325 4.0E-290 T 11-10-2018 AMK58_20895 232c3e7d74560fb2ea10da7c693070ae 434 Hamap MF_00563 Adenosylhomocysteinase [ahcY]. 5 426 50.058 T 11-10-2018 IPR034373 Adenosylhomocysteinase GO:0004013|GO:0019510|GO:0051287 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-2408508|Reactome: R-HSA-5578997 AMK58_20895 232c3e7d74560fb2ea10da7c693070ae 434 PIRSF PIRSF001109 1 434 2.2E-202 T 11-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 AMK58_20895 232c3e7d74560fb2ea10da7c693070ae 434 Gene3D G3DSA:3.40.50.720 201 350 3.7E-76 T 11-10-2018 AMK58_20895 232c3e7d74560fb2ea10da7c693070ae 434 SMART SM00996 9 433 0.0 T 11-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 AMK58_20895 232c3e7d74560fb2ea10da7c693070ae 434 SMART SM00997 195 354 4.5E-116 T 11-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 AMK58_20895 232c3e7d74560fb2ea10da7c693070ae 434 SUPERFAMILY SSF52283 7 434 5.67E-123 T 11-10-2018 AMK58_20895 232c3e7d74560fb2ea10da7c693070ae 434 Gene3D G3DSA:3.40.50.1480 7 200 1.5E-99 T 11-10-2018 AMK58_20895 232c3e7d74560fb2ea10da7c693070ae 434 TIGRFAM TIGR00936 ahcY: adenosylhomocysteinase 10 426 2.2E-197 T 11-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 AMK58_20895 232c3e7d74560fb2ea10da7c693070ae 434 ProSitePatterns PS00738 S-adenosyl-L-homocysteine hydrolase signature 1. 81 95 - T 11-10-2018 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 AMK58_20895 232c3e7d74560fb2ea10da7c693070ae 434 ProSitePatterns PS00739 S-adenosyl-L-homocysteine hydrolase signature 2. 217 234 - T 11-10-2018 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 AMK58_20895 232c3e7d74560fb2ea10da7c693070ae 434 Gene3D G3DSA:3.40.50.1480 351 434 7.0E-42 T 11-10-2018 AMK58_20895 232c3e7d74560fb2ea10da7c693070ae 434 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 9 145 1.2E-73 T 11-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 AMK58_20895 232c3e7d74560fb2ea10da7c693070ae 434 SUPERFAMILY SSF51735 195 354 2.54E-79 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_20895 232c3e7d74560fb2ea10da7c693070ae 434 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 195 354 4.0E-83 T 11-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 AMK58_16170 adb5dca76ed1dffa6196530fc61cfb75 321 SMART SM00382 34 241 5.8E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_16170 adb5dca76ed1dffa6196530fc61cfb75 321 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 233 317 4.5E-21 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMK58_16170 adb5dca76ed1dffa6196530fc61cfb75 321 Pfam PF00005 ABC transporter 26 183 9.1E-22 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_16170 adb5dca76ed1dffa6196530fc61cfb75 321 Gene3D G3DSA:3.40.50.300 3 321 1.1E-86 T 11-10-2018 AMK58_16170 adb5dca76ed1dffa6196530fc61cfb75 321 SUPERFAMILY SSF52540 5 254 3.7E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_16170 adb5dca76ed1dffa6196530fc61cfb75 321 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 235 298 3.2E-15 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMK58_16170 adb5dca76ed1dffa6196530fc61cfb75 321 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_10385 f612f132b0bbd1a4641fd42f4cf0b3de 236 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 4 205 2.0E-87 T 11-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_10385 f612f132b0bbd1a4641fd42f4cf0b3de 236 ProSitePatterns PS00474 Ribosomal protein L3 signature. 102 125 - T 11-10-2018 IPR019926 Ribosomal protein L3, conserved site AMK58_10385 f612f132b0bbd1a4641fd42f4cf0b3de 236 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 2 208 37.086 T 11-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_10385 f612f132b0bbd1a4641fd42f4cf0b3de 236 Gene3D G3DSA:2.40.30.10 130 211 9.7E-16 T 11-10-2018 AMK58_10385 f612f132b0bbd1a4641fd42f4cf0b3de 236 Pfam PF00297 Ribosomal protein L3 88 183 7.2E-16 T 11-10-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_10385 f612f132b0bbd1a4641fd42f4cf0b3de 236 SUPERFAMILY SSF50447 1 213 4.77E-83 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMK58_10385 f612f132b0bbd1a4641fd42f4cf0b3de 236 Gene3D G3DSA:2.40.50.620 32 97 2.8E-28 T 11-10-2018 AMK58_17855 fb7d44a53a8695762e7c4b88891d3f61 723 SUPERFAMILY SSF109604 6 191 4.87E-70 T 11-10-2018 AMK58_17855 fb7d44a53a8695762e7c4b88891d3f61 723 SUPERFAMILY SSF81301 182 392 2.62E-59 T 11-10-2018 AMK58_17855 fb7d44a53a8695762e7c4b88891d3f61 723 Gene3D G3DSA:1.10.3210.10 1 192 9.6E-78 T 11-10-2018 AMK58_17855 fb7d44a53a8695762e7c4b88891d3f61 723 Pfam PF04607 Region found in RelA / SpoT proteins 237 347 2.6E-35 T 11-10-2018 IPR007685 RelA/SpoT GO:0015969 AMK58_17855 fb7d44a53a8695762e7c4b88891d3f61 723 SUPERFAMILY SSF81271 375 448 6.32E-23 T 11-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 AMK58_17855 fb7d44a53a8695762e7c4b88891d3f61 723 Gene3D G3DSA:3.10.20.30 381 453 8.2E-34 T 11-10-2018 IPR012675 Beta-grasp domain superfamily AMK58_17855 fb7d44a53a8695762e7c4b88891d3f61 723 SMART SM00471 41 153 1.8E-8 T 11-10-2018 IPR003607 HD/PDEase domain AMK58_17855 fb7d44a53a8695762e7c4b88891d3f61 723 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 26 715 3.3E-219 T 11-10-2018 IPR004811 RelA/SpoT family GO:0015969 AMK58_17855 fb7d44a53a8695762e7c4b88891d3f61 723 SUPERFAMILY SSF55021 646 717 8.02E-9 T 11-10-2018 AMK58_17855 fb7d44a53a8695762e7c4b88891d3f61 723 Gene3D G3DSA:3.30.460.10 195 327 3.6E-44 T 11-10-2018 AMK58_17855 fb7d44a53a8695762e7c4b88891d3f61 723 Pfam PF13328 HD domain 26 176 8.7E-49 T 11-10-2018 IPR003607 HD/PDEase domain AMK58_17855 fb7d44a53a8695762e7c4b88891d3f61 723 SMART SM00954 237 347 1.6E-62 T 11-10-2018 IPR007685 RelA/SpoT GO:0015969 AMK58_17855 fb7d44a53a8695762e7c4b88891d3f61 723 Gene3D G3DSA:3.30.70.260 646 722 2.9E-12 T 11-10-2018 AMK58_17855 fb7d44a53a8695762e7c4b88891d3f61 723 Pfam PF02824 TGS domain 389 447 6.9E-20 T 11-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 AMK58_17855 fb7d44a53a8695762e7c4b88891d3f61 723 Pfam PF13291 ACT domain 645 719 6.1E-18 T 11-10-2018 IPR002912 ACT domain AMK58_00195 5e4ce8698194d0f17e04bf9a3eee8080 400 Gene3D G3DSA:3.40.50.2000 23 168 6.0E-45 T 11-10-2018 AMK58_00195 5e4ce8698194d0f17e04bf9a3eee8080 400 Pfam PF00534 Glycosyl transferases group 1 273 372 8.0E-25 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 AMK58_00195 5e4ce8698194d0f17e04bf9a3eee8080 400 Gene3D G3DSA:3.40.50.2000 169 377 6.0E-45 T 11-10-2018 AMK58_00195 5e4ce8698194d0f17e04bf9a3eee8080 400 SUPERFAMILY SSF53756 2 385 7.22E-53 T 11-10-2018 AMK58_03805 c9937a64589cf9ce5a3f54ff7fcdae26 779 Gene3D G3DSA:1.10.10.160 140 215 7.3E-96 T 11-10-2018 IPR013986 DExx box DNA helicase domain superfamily AMK58_03805 c9937a64589cf9ce5a3f54ff7fcdae26 779 Pfam PF13361 UvrD-like helicase C-terminal domain 305 635 1.1E-62 T 11-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AMK58_03805 c9937a64589cf9ce5a3f54ff7fcdae26 779 SUPERFAMILY SSF52540 32 661 3.34E-181 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_03805 c9937a64589cf9ce5a3f54ff7fcdae26 779 Gene3D G3DSA:3.40.50.300 36 302 7.3E-96 T 11-10-2018 AMK58_03805 c9937a64589cf9ce5a3f54ff7fcdae26 779 Gene3D G3DSA:3.40.50.300 308 653 4.2E-110 T 11-10-2018 AMK58_03805 c9937a64589cf9ce5a3f54ff7fcdae26 779 Pfam PF00580 UvrD/REP helicase N-terminal domain 36 299 1.7E-73 T 11-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 AMK58_03805 c9937a64589cf9ce5a3f54ff7fcdae26 779 Gene3D G3DSA:1.10.486.10 410 565 4.2E-110 T 11-10-2018 AMK58_00385 c31251bf4a258d13031d216b2d2d7554 672 SUPERFAMILY SSF48208 190 527 3.06E-73 T 11-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 AMK58_00385 c31251bf4a258d13031d216b2d2d7554 672 Gene3D G3DSA:3.40.30.10 2 173 6.2E-65 T 11-10-2018 AMK58_00385 c31251bf4a258d13031d216b2d2d7554 672 Gene3D G3DSA:1.50.10.10 407 575 4.2E-14 T 11-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 AMK58_00385 c31251bf4a258d13031d216b2d2d7554 672 PIRSF PIRSF006402 1 672 2.0E-214 T 11-10-2018 IPR024705 Spermatogenesis-associated protein 20 AMK58_00385 c31251bf4a258d13031d216b2d2d7554 672 Pfam PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) 417 566 4.4E-4 T 11-10-2018 AMK58_00385 c31251bf4a258d13031d216b2d2d7554 672 SUPERFAMILY SSF52833 3 130 2.31E-30 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_00385 c31251bf4a258d13031d216b2d2d7554 672 Pfam PF03190 Protein of unknown function, DUF255 4 164 1.0E-71 T 11-10-2018 IPR004879 Domain of unknown function DUF255 AMK58_00280 2bf076d5a7e028a8f9155016f4e9a18f 148 PIRSF PIRSF029509 4 144 4.0E-37 T 11-10-2018 IPR016923 Uncharacterised conserved protein UCP029509, membrane AMK58_23275 1a48adac851e9ea3fc18286e3311284b 253 Pfam PF00106 short chain dehydrogenase 7 199 5.4E-44 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_23275 1a48adac851e9ea3fc18286e3311284b 253 SUPERFAMILY SSF51735 3 248 3.17E-60 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_23275 1a48adac851e9ea3fc18286e3311284b 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 1.8E-7 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_23275 1a48adac851e9ea3fc18286e3311284b 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 1.8E-7 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_23275 1a48adac851e9ea3fc18286e3311284b 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 1.8E-7 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_23275 1a48adac851e9ea3fc18286e3311284b 253 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 195 0.0088 T 11-10-2018 AMK58_23275 1a48adac851e9ea3fc18286e3311284b 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 3.9E-26 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_23275 1a48adac851e9ea3fc18286e3311284b 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 3.9E-26 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_23275 1a48adac851e9ea3fc18286e3311284b 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 3.9E-26 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_23275 1a48adac851e9ea3fc18286e3311284b 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 3.9E-26 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_23275 1a48adac851e9ea3fc18286e3311284b 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 3.9E-26 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_23275 1a48adac851e9ea3fc18286e3311284b 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 3.9E-26 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_23275 1a48adac851e9ea3fc18286e3311284b 253 Gene3D G3DSA:3.40.50.720 1 252 8.0E-73 T 11-10-2018 AMK58_23275 1a48adac851e9ea3fc18286e3311284b 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 146 174 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMK58_15975 42b26ae311b7c9b3e30dc7846666e253 254 Gene3D G3DSA:1.10.8.60 158 224 5.5E-11 T 11-10-2018 AMK58_15975 42b26ae311b7c9b3e30dc7846666e253 254 Gene3D G3DSA:3.40.50.300 2 155 3.6E-17 T 11-10-2018 AMK58_15975 42b26ae311b7c9b3e30dc7846666e253 254 SUPERFAMILY SSF52540 20 193 3.9E-11 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_15975 42b26ae311b7c9b3e30dc7846666e253 254 Pfam PF00308 Bacterial dnaA protein 88 194 3.3E-6 T 11-10-2018 IPR013317 Chromosomal replication initiator protein DnaA AMK58_14470 0ad125b21eea38fab4aa93bdd5f48cdb 943 SMART SM00028 451 484 130.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14470 0ad125b21eea38fab4aa93bdd5f48cdb 943 SMART SM00028 25 58 240.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14470 0ad125b21eea38fab4aa93bdd5f48cdb 943 SMART SM00028 621 654 0.033 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14470 0ad125b21eea38fab4aa93bdd5f48cdb 943 SMART SM00028 485 518 52.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14470 0ad125b21eea38fab4aa93bdd5f48cdb 943 SMART SM00028 587 620 61.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14470 0ad125b21eea38fab4aa93bdd5f48cdb 943 SMART SM00028 519 552 0.33 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14470 0ad125b21eea38fab4aa93bdd5f48cdb 943 SMART SM00028 553 586 97.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14470 0ad125b21eea38fab4aa93bdd5f48cdb 943 SUPERFAMILY SSF48452 456 661 1.82E-26 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_14470 0ad125b21eea38fab4aa93bdd5f48cdb 943 Gene3D G3DSA:1.25.40.10 454 578 3.7E-21 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_14470 0ad125b21eea38fab4aa93bdd5f48cdb 943 Gene3D G3DSA:1.25.40.10 579 672 2.9E-13 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_14470 0ad125b21eea38fab4aa93bdd5f48cdb 943 Pfam PF00535 Glycosyl transferase family 2 155 290 1.4E-21 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMK58_14470 0ad125b21eea38fab4aa93bdd5f48cdb 943 Gene3D G3DSA:3.90.550.10 153 372 4.7E-28 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_14470 0ad125b21eea38fab4aa93bdd5f48cdb 943 SUPERFAMILY SSF53448 155 364 4.59E-29 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_04890 bee8eebbd3aa06ed7904587e9eba843b 355 SUPERFAMILY SSF53067 4 325 9.93E-20 T 11-10-2018 AMK58_04890 bee8eebbd3aa06ed7904587e9eba843b 355 Gene3D G3DSA:3.30.420.40 5 345 3.5E-117 T 11-10-2018 AMK58_04890 bee8eebbd3aa06ed7904587e9eba843b 355 Pfam PF03702 Anhydro-N-acetylmuramic acid kinase 3 353 9.1E-95 T 11-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 AMK58_04890 bee8eebbd3aa06ed7904587e9eba843b 355 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 2 354 38.952 T 11-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 AMK58_04890 bee8eebbd3aa06ed7904587e9eba843b 355 Gene3D G3DSA:3.30.420.40 138 314 3.5E-117 T 11-10-2018 AMK58_12030 4cd7c52e5b9c479a6b3188450f75f8d9 358 SMART SM00978 213 356 1.8E-35 T 11-10-2018 IPR007379 Tim44-like domain AMK58_12030 4cd7c52e5b9c479a6b3188450f75f8d9 358 Pfam PF04280 Tim44-like domain 221 356 1.8E-29 T 11-10-2018 IPR007379 Tim44-like domain AMK58_12030 4cd7c52e5b9c479a6b3188450f75f8d9 358 Gene3D G3DSA:3.10.450.240 232 358 1.5E-13 T 11-10-2018 AMK58_12030 4cd7c52e5b9c479a6b3188450f75f8d9 358 SUPERFAMILY SSF54427 235 358 7.89E-24 T 11-10-2018 IPR032710 NTF2-like domain superfamily AMK58_05305 afea013c6b895bf6cb7bd34cf149003a 640 Pfam PF13193 AMP-binding enzyme C-terminal domain 516 594 1.2E-22 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMK58_05305 afea013c6b895bf6cb7bd34cf149003a 640 Gene3D G3DSA:3.40.50.12780 34 499 1.5E-107 T 11-10-2018 AMK58_05305 afea013c6b895bf6cb7bd34cf149003a 640 Pfam PF00501 AMP-binding enzyme 74 506 2.8E-86 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMK58_05305 afea013c6b895bf6cb7bd34cf149003a 640 ProSitePatterns PS00455 Putative AMP-binding domain signature. 242 253 - T 11-10-2018 IPR020845 AMP-binding, conserved site AMK58_05305 afea013c6b895bf6cb7bd34cf149003a 640 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 9 63 6.8E-24 T 11-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 AMK58_05305 afea013c6b895bf6cb7bd34cf149003a 640 Gene3D G3DSA:3.30.300.30 502 631 4.4E-22 T 11-10-2018 AMK58_05305 afea013c6b895bf6cb7bd34cf149003a 640 SUPERFAMILY SSF56801 4 623 3.01E-160 T 11-10-2018 AMK58_27625 4f5539b82bece6781146a87da500724f 263 Pfam PF00392 Bacterial regulatory proteins, gntR family 42 102 4.1E-18 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_27625 4f5539b82bece6781146a87da500724f 263 SMART SM00345 44 102 3.1E-18 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_27625 4f5539b82bece6781146a87da500724f 263 Gene3D G3DSA:1.10.10.10 30 103 4.2E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_27625 4f5539b82bece6781146a87da500724f 263 Pfam PF07729 FCD domain 114 235 1.4E-26 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_27625 4f5539b82bece6781146a87da500724f 263 Gene3D G3DSA:1.20.120.530 110 248 1.1E-26 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_27625 4f5539b82bece6781146a87da500724f 263 SUPERFAMILY SSF46785 35 106 2.03E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_27625 4f5539b82bece6781146a87da500724f 263 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 76 92 1.9E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_27625 4f5539b82bece6781146a87da500724f 263 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 62 76 1.9E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_27625 4f5539b82bece6781146a87da500724f 263 SUPERFAMILY SSF48008 111 238 1.88E-26 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_27625 4f5539b82bece6781146a87da500724f 263 SMART SM00895 112 236 4.0E-20 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_15085 f0a7df18b0759ad0894f3d838ce64482 362 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_15085 f0a7df18b0759ad0894f3d838ce64482 362 SUPERFAMILY SSF50331 252 347 6.24E-9 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMK58_15085 f0a7df18b0759ad0894f3d838ce64482 362 Gene3D G3DSA:3.40.50.300 2 223 2.5E-62 T 11-10-2018 AMK58_15085 f0a7df18b0759ad0894f3d838ce64482 362 Pfam PF00005 ABC transporter 18 163 2.2E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_15085 f0a7df18b0759ad0894f3d838ce64482 362 SUPERFAMILY SSF52540 5 239 7.56E-79 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_15085 f0a7df18b0759ad0894f3d838ce64482 362 Pfam PF08402 TOBE domain 279 347 7.3E-7 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMK58_15085 f0a7df18b0759ad0894f3d838ce64482 362 SMART SM00382 26 213 3.0E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_15085 f0a7df18b0759ad0894f3d838ce64482 362 Gene3D G3DSA:2.40.50.140 286 342 1.7E-5 T 11-10-2018 AMK58_15085 f0a7df18b0759ad0894f3d838ce64482 362 Gene3D G3DSA:2.40.50.940 224 285 1.7E-5 T 11-10-2018 AMK58_26920 23db1f3bf0578903d325fd6774df32a2 97 Pfam PF00708 Acylphosphatase 12 87 3.6E-22 T 11-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AMK58_26920 23db1f3bf0578903d325fd6774df32a2 97 ProSitePatterns PS00151 Acylphosphatase signature 2. 38 54 - T 11-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AMK58_26920 23db1f3bf0578903d325fd6774df32a2 97 Gene3D G3DSA:3.30.70.100 1 94 2.7E-27 T 11-10-2018 AMK58_26920 23db1f3bf0578903d325fd6774df32a2 97 PRINTS PR00112 Acylphosphatase signature 9 24 7.0E-8 T 11-10-2018 IPR020456 Acylphosphatase GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AMK58_26920 23db1f3bf0578903d325fd6774df32a2 97 PRINTS PR00112 Acylphosphatase signature 30 55 7.0E-8 T 11-10-2018 IPR020456 Acylphosphatase GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AMK58_26920 23db1f3bf0578903d325fd6774df32a2 97 SUPERFAMILY SSF54975 6 86 2.14E-25 T 11-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AMK58_03875 649936d70a738c6693181c893c7be992 795 Gene3D G3DSA:1.10.287.610 19 90 1.2E-23 T 11-10-2018 AMK58_03875 649936d70a738c6693181c893c7be992 795 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 23 338 1.3E-117 T 11-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 AMK58_03875 649936d70a738c6693181c893c7be992 795 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 427 454 3.6E-11 T 11-10-2018 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 AMK58_03875 649936d70a738c6693181c893c7be992 795 SUPERFAMILY SSF52113 719 793 1.4E-18 T 11-10-2018 IPR036420 BRCT domain superfamily AMK58_03875 649936d70a738c6693181c893c7be992 795 SUPERFAMILY SSF47781 620 708 6.74E-11 T 11-10-2018 IPR010994 RuvA domain 2-like AMK58_03875 649936d70a738c6693181c893c7be992 795 SMART SM00292 719 795 2.5E-10 T 11-10-2018 IPR001357 BRCT domain AMK58_03875 649936d70a738c6693181c893c7be992 795 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 721 793 2.8E-12 T 11-10-2018 IPR001357 BRCT domain AMK58_03875 649936d70a738c6693181c893c7be992 795 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 31 613 3.4E-205 T 11-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 AMK58_03875 649936d70a738c6693181c893c7be992 795 Gene3D G3DSA:1.10.150.20 532 613 3.4E-15 T 11-10-2018 AMK58_03875 649936d70a738c6693181c893c7be992 795 SUPERFAMILY SSF56091 19 336 1.22E-115 T 11-10-2018 AMK58_03875 649936d70a738c6693181c893c7be992 795 Hamap MF_01588 DNA ligase [ligA]. 22 793 51.541 T 11-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 AMK58_03875 649936d70a738c6693181c893c7be992 795 Gene3D G3DSA:3.40.50.10190 718 795 5.2E-26 T 11-10-2018 IPR036420 BRCT domain superfamily AMK58_03875 649936d70a738c6693181c893c7be992 795 SUPERFAMILY SSF47781 423 613 9.64E-48 T 11-10-2018 IPR010994 RuvA domain 2-like AMK58_03875 649936d70a738c6693181c893c7be992 795 Gene3D G3DSA:3.30.470.90 91 337 1.5E-96 T 11-10-2018 AMK58_03875 649936d70a738c6693181c893c7be992 795 Pfam PF12826 Helix-hairpin-helix motif 627 698 2.9E-6 T 11-10-2018 AMK58_03875 649936d70a738c6693181c893c7be992 795 Pfam PF12826 Helix-hairpin-helix motif 537 607 4.9E-11 T 11-10-2018 AMK58_03875 649936d70a738c6693181c893c7be992 795 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 137 166 - T 11-10-2018 IPR018239 NAD-dependent DNA ligase, active site AMK58_03875 649936d70a738c6693181c893c7be992 795 PIRSF PIRSF001604 616 795 5.0E-37 T 11-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 AMK58_03875 649936d70a738c6693181c893c7be992 795 PIRSF PIRSF001604 16 621 1.1E-202 T 11-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 AMK58_03875 649936d70a738c6693181c893c7be992 795 SMART SM00278 582 601 14.0 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMK58_03875 649936d70a738c6693181c893c7be992 795 SMART SM00278 669 688 95.0 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMK58_03875 649936d70a738c6693181c893c7be992 795 SMART SM00278 539 558 100.0 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMK58_03875 649936d70a738c6693181c893c7be992 795 SMART SM00532 23 468 1.6E-252 T 11-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 AMK58_03875 649936d70a738c6693181c893c7be992 795 Gene3D G3DSA:2.20.70.80 411 451 2.9E-18 T 11-10-2018 AMK58_03875 649936d70a738c6693181c893c7be992 795 Gene3D G3DSA:2.40.50.140 338 410 8.4E-33 T 11-10-2018 AMK58_03875 649936d70a738c6693181c893c7be992 795 SUPERFAMILY SSF50249 337 421 5.48E-27 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_03875 649936d70a738c6693181c893c7be992 795 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 341 418 2.1E-34 T 11-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 AMK58_03875 649936d70a738c6693181c893c7be992 795 Gene3D G3DSA:1.10.150.20 452 531 1.5E-26 T 11-10-2018 AMK58_03875 649936d70a738c6693181c893c7be992 795 Gene3D G3DSA:1.10.150.20 621 711 5.8E-14 T 11-10-2018 AMK58_22885 74e48d990918f2c32ca2f97668bb44b3 569 SUPERFAMILY SSF55781 237 365 5.89E-7 T 11-10-2018 AMK58_22885 74e48d990918f2c32ca2f97668bb44b3 569 Pfam PF07694 5TMR of 5TMR-LYT 30 198 5.2E-57 T 11-10-2018 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 AMK58_22885 74e48d990918f2c32ca2f97668bb44b3 569 Gene3D G3DSA:3.30.565.10 420 561 2.9E-15 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_22885 74e48d990918f2c32ca2f97668bb44b3 569 SUPERFAMILY SSF55874 428 559 4.02E-16 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_22885 74e48d990918f2c32ca2f97668bb44b3 569 Pfam PF06580 Histidine kinase 373 449 4.3E-23 T 11-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 AMK58_22885 74e48d990918f2c32ca2f97668bb44b3 569 SMART SM00387 461 561 1.7E-4 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_16030 152a87a67ca5a505b09e556e27a8c8af 328 Gene3D G3DSA:3.40.50.720 15 305 2.7E-107 T 11-10-2018 AMK58_16030 152a87a67ca5a505b09e556e27a8c8af 328 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 120 296 3.9E-55 T 11-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AMK58_16030 152a87a67ca5a505b09e556e27a8c8af 328 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 33 327 1.2E-26 T 11-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 AMK58_16030 152a87a67ca5a505b09e556e27a8c8af 328 SUPERFAMILY SSF52283 9 145 1.12E-30 T 11-10-2018 AMK58_16030 152a87a67ca5a505b09e556e27a8c8af 328 SUPERFAMILY SSF51735 111 297 2.01E-58 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_16030 152a87a67ca5a505b09e556e27a8c8af 328 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 236 252 - T 11-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AMK58_16030 152a87a67ca5a505b09e556e27a8c8af 328 Gene3D G3DSA:3.40.50.720 111 297 2.7E-107 T 11-10-2018 AMK58_10395 460e628b61441cf9fe32165edabc3ed9 396 Pfam PF03144 Elongation factor Tu domain 2 227 295 3.2E-16 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AMK58_10395 460e628b61441cf9fe32165edabc3ed9 396 Gene3D G3DSA:3.40.50.300 1 205 8.9E-71 T 11-10-2018 AMK58_10395 460e628b61441cf9fe32165edabc3ed9 396 Pfam PF03143 Elongation factor Tu C-terminal domain 300 394 2.9E-33 T 11-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal AMK58_10395 460e628b61441cf9fe32165edabc3ed9 396 SUPERFAMILY SSF50465 300 395 5.47E-35 T 11-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal AMK58_10395 460e628b61441cf9fe32165edabc3ed9 396 SUPERFAMILY SSF50447 205 303 1.51E-30 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMK58_10395 460e628b61441cf9fe32165edabc3ed9 396 Gene3D G3DSA:2.40.30.10 340 395 2.7E-28 T 11-10-2018 AMK58_10395 460e628b61441cf9fe32165edabc3ed9 396 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 396 2.4E-228 T 11-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMK58_10395 460e628b61441cf9fe32165edabc3ed9 396 SUPERFAMILY SSF52540 9 228 6.54E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_10395 460e628b61441cf9fe32165edabc3ed9 396 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site AMK58_10395 460e628b61441cf9fe32165edabc3ed9 396 PRINTS PR00315 GTP-binding elongation factor signature 94 105 4.0E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_10395 460e628b61441cf9fe32165edabc3ed9 396 PRINTS PR00315 GTP-binding elongation factor signature 131 140 4.0E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_10395 460e628b61441cf9fe32165edabc3ed9 396 PRINTS PR00315 GTP-binding elongation factor signature 78 88 4.0E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_10395 460e628b61441cf9fe32165edabc3ed9 396 PRINTS PR00315 GTP-binding elongation factor signature 58 66 4.0E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_10395 460e628b61441cf9fe32165edabc3ed9 396 PRINTS PR00315 GTP-binding elongation factor signature 14 27 4.0E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_10395 460e628b61441cf9fe32165edabc3ed9 396 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 14 150 1.4E-14 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMK58_10395 460e628b61441cf9fe32165edabc3ed9 396 Pfam PF00009 Elongation factor Tu GTP binding domain 10 203 2.3E-57 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_10395 460e628b61441cf9fe32165edabc3ed9 396 Gene3D G3DSA:2.40.30.10 209 336 9.1E-52 T 11-10-2018 AMK58_10395 460e628b61441cf9fe32165edabc3ed9 396 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 396 60.099 T 11-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMK58_10465 460e628b61441cf9fe32165edabc3ed9 396 Pfam PF03144 Elongation factor Tu domain 2 227 295 3.2E-16 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AMK58_10465 460e628b61441cf9fe32165edabc3ed9 396 Gene3D G3DSA:3.40.50.300 1 205 8.9E-71 T 11-10-2018 AMK58_10465 460e628b61441cf9fe32165edabc3ed9 396 Pfam PF03143 Elongation factor Tu C-terminal domain 300 394 2.9E-33 T 11-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal AMK58_10465 460e628b61441cf9fe32165edabc3ed9 396 SUPERFAMILY SSF50465 300 395 5.47E-35 T 11-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal AMK58_10465 460e628b61441cf9fe32165edabc3ed9 396 SUPERFAMILY SSF50447 205 303 1.51E-30 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMK58_10465 460e628b61441cf9fe32165edabc3ed9 396 Gene3D G3DSA:2.40.30.10 340 395 2.7E-28 T 11-10-2018 AMK58_10465 460e628b61441cf9fe32165edabc3ed9 396 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 396 2.4E-228 T 11-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMK58_10465 460e628b61441cf9fe32165edabc3ed9 396 SUPERFAMILY SSF52540 9 228 6.54E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_10465 460e628b61441cf9fe32165edabc3ed9 396 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site AMK58_10465 460e628b61441cf9fe32165edabc3ed9 396 PRINTS PR00315 GTP-binding elongation factor signature 94 105 4.0E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_10465 460e628b61441cf9fe32165edabc3ed9 396 PRINTS PR00315 GTP-binding elongation factor signature 131 140 4.0E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_10465 460e628b61441cf9fe32165edabc3ed9 396 PRINTS PR00315 GTP-binding elongation factor signature 78 88 4.0E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_10465 460e628b61441cf9fe32165edabc3ed9 396 PRINTS PR00315 GTP-binding elongation factor signature 58 66 4.0E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_10465 460e628b61441cf9fe32165edabc3ed9 396 PRINTS PR00315 GTP-binding elongation factor signature 14 27 4.0E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_10465 460e628b61441cf9fe32165edabc3ed9 396 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 14 150 1.4E-14 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMK58_10465 460e628b61441cf9fe32165edabc3ed9 396 Pfam PF00009 Elongation factor Tu GTP binding domain 10 203 2.3E-57 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_10465 460e628b61441cf9fe32165edabc3ed9 396 Gene3D G3DSA:2.40.30.10 209 336 9.1E-52 T 11-10-2018 AMK58_10465 460e628b61441cf9fe32165edabc3ed9 396 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 396 60.099 T 11-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMK58_28105 cede6d5858e7000fa8e6b99a45a8d3d4 980 SUPERFAMILY SSF46894 30 126 5.39E-19 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMK58_28105 cede6d5858e7000fa8e6b99a45a8d3d4 980 SUPERFAMILY SSF48452 835 946 8.35E-8 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_28105 cede6d5858e7000fa8e6b99a45a8d3d4 980 PRINTS PR00364 Disease resistance protein signature 351 365 4.4E-5 T 11-10-2018 AMK58_28105 cede6d5858e7000fa8e6b99a45a8d3d4 980 PRINTS PR00364 Disease resistance protein signature 177 192 4.4E-5 T 11-10-2018 AMK58_28105 cede6d5858e7000fa8e6b99a45a8d3d4 980 PRINTS PR00364 Disease resistance protein signature 244 258 4.4E-5 T 11-10-2018 AMK58_28105 cede6d5858e7000fa8e6b99a45a8d3d4 980 Pfam PF00486 Transcriptional regulatory protein, C terminal 52 124 4.6E-15 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_28105 cede6d5858e7000fa8e6b99a45a8d3d4 980 SMART SM00862 49 124 1.5E-14 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_28105 cede6d5858e7000fa8e6b99a45a8d3d4 980 SUPERFAMILY SSF52540 148 419 2.44E-20 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_28105 cede6d5858e7000fa8e6b99a45a8d3d4 980 Gene3D G3DSA:1.10.10.10 29 132 1.1E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_28105 cede6d5858e7000fa8e6b99a45a8d3d4 980 Gene3D G3DSA:1.25.40.10 559 951 2.0E-12 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_28105 cede6d5858e7000fa8e6b99a45a8d3d4 980 Gene3D G3DSA:3.40.50.300 143 296 5.7E-11 T 11-10-2018 AMK58_06920 3fa6fb5fe99e95a7a78918ae0b751e42 291 SMART SM00881 4 100 8.8E-38 T 11-10-2018 IPR003781 CoA-binding GO:0048037 AMK58_06920 3fa6fb5fe99e95a7a78918ae0b751e42 291 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 4 288 5.7E-139 T 11-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMK58_06920 3fa6fb5fe99e95a7a78918ae0b751e42 291 Gene3D G3DSA:3.40.50.720 2 123 1.3E-53 T 11-10-2018 AMK58_06920 3fa6fb5fe99e95a7a78918ae0b751e42 291 Pfam PF00549 CoA-ligase 151 265 4.1E-18 T 11-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMK58_06920 3fa6fb5fe99e95a7a78918ae0b751e42 291 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 152 181 - T 11-10-2018 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site AMK58_06920 3fa6fb5fe99e95a7a78918ae0b751e42 291 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 237 250 - T 11-10-2018 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site AMK58_06920 3fa6fb5fe99e95a7a78918ae0b751e42 291 Pfam PF02629 CoA binding domain 6 99 1.8E-32 T 11-10-2018 IPR003781 CoA-binding GO:0048037 AMK58_06920 3fa6fb5fe99e95a7a78918ae0b751e42 291 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 3.4E-37 T 11-10-2018 AMK58_06920 3fa6fb5fe99e95a7a78918ae0b751e42 291 PRINTS PR01798 Succinyl-CoA synthase signature 177 195 3.4E-37 T 11-10-2018 AMK58_06920 3fa6fb5fe99e95a7a78918ae0b751e42 291 PRINTS PR01798 Succinyl-CoA synthase signature 208 221 3.4E-37 T 11-10-2018 AMK58_06920 3fa6fb5fe99e95a7a78918ae0b751e42 291 PRINTS PR01798 Succinyl-CoA synthase signature 241 258 3.4E-37 T 11-10-2018 AMK58_06920 3fa6fb5fe99e95a7a78918ae0b751e42 291 Gene3D G3DSA:3.40.50.261 124 290 9.7E-71 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMK58_06920 3fa6fb5fe99e95a7a78918ae0b751e42 291 SUPERFAMILY SSF52210 123 288 6.02E-52 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMK58_06920 3fa6fb5fe99e95a7a78918ae0b751e42 291 PIRSF PIRSF001553 1 291 8.4E-132 T 11-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMK58_06920 3fa6fb5fe99e95a7a78918ae0b751e42 291 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 289 42.666 T 11-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMK58_06920 3fa6fb5fe99e95a7a78918ae0b751e42 291 SUPERFAMILY SSF51735 1 122 3.68E-45 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_13715 6ee39c6be42680a891916f7564ee463d 380 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 - T 11-10-2018 IPR018253 DnaJ domain, conserved site AMK58_13715 6ee39c6be42680a891916f7564ee463d 380 Gene3D G3DSA:2.60.260.20 121 253 1.5E-38 T 11-10-2018 AMK58_13715 6ee39c6be42680a891916f7564ee463d 380 SUPERFAMILY SSF46565 1 113 3.01E-36 T 11-10-2018 IPR036869 Chaperone J-domain superfamily AMK58_13715 6ee39c6be42680a891916f7564ee463d 380 SUPERFAMILY SSF57938 138 215 1.15E-20 T 11-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily AMK58_13715 6ee39c6be42680a891916f7564ee463d 380 SMART SM00271 4 62 6.5E-32 T 11-10-2018 IPR001623 DnaJ domain AMK58_13715 6ee39c6be42680a891916f7564ee463d 380 Pfam PF00226 DnaJ domain 5 67 1.1E-28 T 11-10-2018 IPR001623 DnaJ domain AMK58_13715 6ee39c6be42680a891916f7564ee463d 380 Pfam PF00684 DnaJ central domain 151 211 2.1E-13 T 11-10-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 AMK58_13715 6ee39c6be42680a891916f7564ee463d 380 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 354 5.8E-135 T 11-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 AMK58_13715 6ee39c6be42680a891916f7564ee463d 380 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 374 41.713 T 11-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 AMK58_13715 6ee39c6be42680a891916f7564ee463d 380 SUPERFAMILY SSF49493 263 349 7.19E-24 T 11-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AMK58_13715 6ee39c6be42680a891916f7564ee463d 380 Pfam PF01556 DnaJ C terminal domain 125 338 4.3E-43 T 11-10-2018 IPR002939 Chaperone DnaJ, C-terminal AMK58_13715 6ee39c6be42680a891916f7564ee463d 380 Gene3D G3DSA:2.10.230.10 151 211 1.5E-38 T 11-10-2018 AMK58_13715 6ee39c6be42680a891916f7564ee463d 380 SUPERFAMILY SSF49493 122 261 6.67E-20 T 11-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AMK58_13715 6ee39c6be42680a891916f7564ee463d 380 Gene3D G3DSA:2.60.260.20 258 365 1.7E-30 T 11-10-2018 AMK58_13715 6ee39c6be42680a891916f7564ee463d 380 Gene3D G3DSA:1.10.287.110 1 117 3.9E-38 T 11-10-2018 IPR036869 Chaperone J-domain superfamily AMK58_13715 6ee39c6be42680a891916f7564ee463d 380 PRINTS PR00625 DnaJ domain signature 25 40 2.1E-32 T 11-10-2018 IPR001623 DnaJ domain AMK58_13715 6ee39c6be42680a891916f7564ee463d 380 PRINTS PR00625 DnaJ domain signature 7 25 2.1E-32 T 11-10-2018 IPR001623 DnaJ domain AMK58_13715 6ee39c6be42680a891916f7564ee463d 380 PRINTS PR00625 DnaJ domain signature 42 62 2.1E-32 T 11-10-2018 IPR001623 DnaJ domain AMK58_13715 6ee39c6be42680a891916f7564ee463d 380 PRINTS PR00625 DnaJ domain signature 62 81 2.1E-32 T 11-10-2018 IPR001623 DnaJ domain AMK58_22645 801806f2f4d96fcd9a7ab67a28eb5658 649 Pfam PF00924 Mechanosensitive ion channel 411 610 1.6E-39 T 11-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 AMK58_22645 801806f2f4d96fcd9a7ab67a28eb5658 649 SUPERFAMILY SSF82861 366 452 2.09E-14 T 11-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 AMK58_22645 801806f2f4d96fcd9a7ab67a28eb5658 649 Gene3D G3DSA:2.30.30.60 469 518 4.6E-16 T 11-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily AMK58_22645 801806f2f4d96fcd9a7ab67a28eb5658 649 SUPERFAMILY SSF82689 517 610 1.05E-8 T 11-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 AMK58_22645 801806f2f4d96fcd9a7ab67a28eb5658 649 Gene3D G3DSA:3.30.70.100 522 609 6.3E-16 T 11-10-2018 AMK58_22645 801806f2f4d96fcd9a7ab67a28eb5658 649 SUPERFAMILY SSF50182 454 517 1.44E-11 T 11-10-2018 IPR010920 LSM domain superfamily AMK58_21365 1286772b107043241d2c8b202b39d9ab 693 Hamap MF_01251 UPF0313 protein YgiQ [ygiQ]. 33 619 48.803 T 11-10-2018 IPR022946 Uncharacterised protein family UPF0313 AMK58_21365 1286772b107043241d2c8b202b39d9ab 693 Gene3D G3DSA:3.80.30.20 347 601 2.8E-16 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe AMK58_21365 1286772b107043241d2c8b202b39d9ab 693 Pfam PF08497 Radical SAM N-terminal 33 351 1.6E-143 T 11-10-2018 IPR013704 Uncharacterised protein family UPF0313, N-terminal AMK58_21365 1286772b107043241d2c8b202b39d9ab 693 SMART SM00729 348 604 6.5E-11 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMK58_21365 1286772b107043241d2c8b202b39d9ab 693 Pfam PF11842 Domain of unknown function (DUF3362) 566 673 1.6E-41 T 11-10-2018 IPR024560 Uncharacterised protein family UPF0313, C-terminal AMK58_21365 1286772b107043241d2c8b202b39d9ab 693 TIGRFAM TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ 33 617 2.9E-261 T 11-10-2018 IPR022946 Uncharacterised protein family UPF0313 AMK58_21365 1286772b107043241d2c8b202b39d9ab 693 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 352 372 - T 11-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 AMK58_21365 1286772b107043241d2c8b202b39d9ab 693 SUPERFAMILY SSF102114 349 585 5.76E-14 T 11-10-2018 AMK58_21365 1286772b107043241d2c8b202b39d9ab 693 Pfam PF04055 Radical SAM superfamily 352 557 1.0E-22 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMK58_06255 71935de3c95fe2db0fec968fd1b84f1b 264 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 7 227 2.5E-100 T 11-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_06255 71935de3c95fe2db0fec968fd1b84f1b 264 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 8 19 - T 11-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 AMK58_06255 71935de3c95fe2db0fec968fd1b84f1b 264 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 4 226 41.609 T 11-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_06255 71935de3c95fe2db0fec968fd1b84f1b 264 PRINTS PR00395 Ribosomal protein S2 signature 159 176 1.7E-40 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_06255 71935de3c95fe2db0fec968fd1b84f1b 264 PRINTS PR00395 Ribosomal protein S2 signature 39 48 1.7E-40 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_06255 71935de3c95fe2db0fec968fd1b84f1b 264 PRINTS PR00395 Ribosomal protein S2 signature 8 26 1.7E-40 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_06255 71935de3c95fe2db0fec968fd1b84f1b 264 PRINTS PR00395 Ribosomal protein S2 signature 89 106 1.7E-40 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_06255 71935de3c95fe2db0fec968fd1b84f1b 264 PRINTS PR00395 Ribosomal protein S2 signature 176 187 1.7E-40 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_06255 71935de3c95fe2db0fec968fd1b84f1b 264 PRINTS PR00395 Ribosomal protein S2 signature 197 211 1.7E-40 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_06255 71935de3c95fe2db0fec968fd1b84f1b 264 SUPERFAMILY SSF52313 8 237 1.83E-92 T 11-10-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily AMK58_06255 71935de3c95fe2db0fec968fd1b84f1b 264 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 159 183 - T 11-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 AMK58_06255 71935de3c95fe2db0fec968fd1b84f1b 264 Gene3D G3DSA:1.10.287.610 105 151 8.1E-89 T 11-10-2018 AMK58_06255 71935de3c95fe2db0fec968fd1b84f1b 264 Gene3D G3DSA:3.40.50.10490 10 219 8.1E-89 T 11-10-2018 AMK58_06255 71935de3c95fe2db0fec968fd1b84f1b 264 Pfam PF00318 Ribosomal protein S2 11 225 5.4E-94 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_27500 9b58dc953be847087f596862cab475e8 311 Gene3D G3DSA:1.10.10.10 2 89 3.3E-29 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_27500 9b58dc953be847087f596862cab475e8 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 1.6E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_27500 9b58dc953be847087f596862cab475e8 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 1.6E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_27500 9b58dc953be847087f596862cab475e8 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 1.6E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_27500 9b58dc953be847087f596862cab475e8 311 SUPERFAMILY SSF53850 92 299 4.22E-35 T 11-10-2018 AMK58_27500 9b58dc953be847087f596862cab475e8 311 Gene3D G3DSA:3.40.190.10 97 292 8.8E-63 T 11-10-2018 AMK58_27500 9b58dc953be847087f596862cab475e8 311 Pfam PF03466 LysR substrate binding domain 92 297 9.3E-40 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_27500 9b58dc953be847087f596862cab475e8 311 Gene3D G3DSA:3.40.190.10 166 269 8.8E-63 T 11-10-2018 AMK58_27500 9b58dc953be847087f596862cab475e8 311 SUPERFAMILY SSF46785 7 91 7.19E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_27500 9b58dc953be847087f596862cab475e8 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 1.3E-21 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_16755 0c44794c9e76611bc1b67060403000d7 198 Gene3D G3DSA:3.20.19.10 1 168 1.3E-60 T 11-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 AMK58_16755 0c44794c9e76611bc1b67060403000d7 198 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 194 35.601 T 11-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 AMK58_16755 0c44794c9e76611bc1b67060403000d7 198 Pfam PF00694 Aconitase C-terminal domain 16 116 1.6E-19 T 11-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 AMK58_16755 0c44794c9e76611bc1b67060403000d7 198 SUPERFAMILY SSF52016 1 185 2.35E-46 T 11-10-2018 AMK58_16755 0c44794c9e76611bc1b67060403000d7 198 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 180 1.1E-52 T 11-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 AMK58_03485 e430df5cb5dcb7bb9dfa76a8f141e49b 322 Gene3D G3DSA:2.130.10.10 122 223 3.7E-17 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 AMK58_03485 e430df5cb5dcb7bb9dfa76a8f141e49b 322 Pfam PF10282 Lactonase, 7-bladed beta-propeller 181 302 8.8E-6 T 11-10-2018 IPR019405 Lactonase, 7-bladed beta propeller AMK58_03485 e430df5cb5dcb7bb9dfa76a8f141e49b 322 Pfam PF10282 Lactonase, 7-bladed beta-propeller 23 81 4.3E-5 T 11-10-2018 IPR019405 Lactonase, 7-bladed beta propeller AMK58_03485 e430df5cb5dcb7bb9dfa76a8f141e49b 322 SUPERFAMILY SSF50974 5 320 3.4E-83 T 11-10-2018 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 AMK58_03485 e430df5cb5dcb7bb9dfa76a8f141e49b 322 Gene3D G3DSA:2.130.10.10 15 113 3.3E-29 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 AMK58_03485 e430df5cb5dcb7bb9dfa76a8f141e49b 322 Gene3D G3DSA:2.130.10.10 224 321 1.3E-24 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 AMK58_03485 e430df5cb5dcb7bb9dfa76a8f141e49b 322 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 24 61 8.3E-13 T 11-10-2018 IPR011964 YVTN beta-propeller repeat AMK58_03485 e430df5cb5dcb7bb9dfa76a8f141e49b 322 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 280 320 3.2E-15 T 11-10-2018 IPR011964 YVTN beta-propeller repeat AMK58_03485 e430df5cb5dcb7bb9dfa76a8f141e49b 322 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 104 145 6.9E-11 T 11-10-2018 IPR011964 YVTN beta-propeller repeat AMK58_03485 e430df5cb5dcb7bb9dfa76a8f141e49b 322 TIGRFAM TIGR03866 PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein 16 321 2.6E-160 T 11-10-2018 IPR022456 PQQ-dependent catabolism-associated beta-propeller protein AMK58_00455 c6a3fb76814edca33ef2b6eb215aceb7 165 Hamap MF_00821 Protein-export protein SecB [secB]. 1 154 29.4 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AMK58_00455 c6a3fb76814edca33ef2b6eb215aceb7 165 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 19 150 1.5E-42 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AMK58_00455 c6a3fb76814edca33ef2b6eb215aceb7 165 Gene3D G3DSA:3.10.420.10 1 164 1.7E-56 T 11-10-2018 IPR035958 SecB-like superfamily AMK58_00455 c6a3fb76814edca33ef2b6eb215aceb7 165 Pfam PF02556 Preprotein translocase subunit SecB 15 151 8.7E-53 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AMK58_00455 c6a3fb76814edca33ef2b6eb215aceb7 165 SUPERFAMILY SSF54611 10 150 2.83E-47 T 11-10-2018 IPR035958 SecB-like superfamily AMK58_00455 c6a3fb76814edca33ef2b6eb215aceb7 165 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 106 128 6.1E-26 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AMK58_00455 c6a3fb76814edca33ef2b6eb215aceb7 165 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 132 150 6.1E-26 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AMK58_00455 c6a3fb76814edca33ef2b6eb215aceb7 165 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 21 38 6.1E-26 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AMK58_00455 c6a3fb76814edca33ef2b6eb215aceb7 165 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 82 102 6.1E-26 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AMK58_17420 8f04d9850c89639bbcaa02a9ec9995c7 541 Gene3D G3DSA:3.90.400.10 107 177 1.1E-144 T 11-10-2018 AMK58_17420 8f04d9850c89639bbcaa02a9ec9995c7 541 SMART SM00642 15 398 6.7E-87 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMK58_17420 8f04d9850c89639bbcaa02a9ec9995c7 541 Gene3D G3DSA:3.20.20.80 7 452 1.1E-144 T 11-10-2018 AMK58_17420 8f04d9850c89639bbcaa02a9ec9995c7 541 Pfam PF16657 Maltogenic Amylase, C-terminal domain 467 534 2.0E-6 T 11-10-2018 IPR032091 Maltogenic Amylase, C-terminal AMK58_17420 8f04d9850c89639bbcaa02a9ec9995c7 541 Pfam PF00128 Alpha amylase, catalytic domain 30 371 1.8E-69 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMK58_17420 8f04d9850c89639bbcaa02a9ec9995c7 541 SUPERFAMILY SSF51445 7 458 2.29E-111 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily AMK58_17420 8f04d9850c89639bbcaa02a9ec9995c7 541 SUPERFAMILY SSF51011 467 537 7.2E-7 T 11-10-2018 AMK58_07430 9f6acb9fa65f559724526da982ba7db2 342 Gene3D G3DSA:3.40.50.150 24 153 2.1E-9 T 11-10-2018 AMK58_07430 9f6acb9fa65f559724526da982ba7db2 342 Gene3D G3DSA:3.40.50.150 164 341 1.4E-34 T 11-10-2018 AMK58_07430 9f6acb9fa65f559724526da982ba7db2 342 Pfam PF08468 Methyltransferase small domain N-terminal 67 159 1.6E-8 T 11-10-2018 IPR013675 Methyltransferase small, N-terminal GO:0006364|GO:0008990 AMK58_07430 9f6acb9fa65f559724526da982ba7db2 342 SUPERFAMILY SSF53335 182 308 3.32E-20 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_07430 9f6acb9fa65f559724526da982ba7db2 342 Pfam PF05175 Methyltransferase small domain 173 337 1.3E-36 T 11-10-2018 IPR007848 Methyltransferase small domain GO:0008168 AMK58_15505 44f2172aea145484867ba48314b3d4bb 134 Pfam PF04241 Protein of unknown function (DUF423) 22 109 4.2E-22 T 11-10-2018 IPR006696 Protein of unknown function DUF423 AMK58_07685 eaa3877282dcdb7f0e34a8d6d0be058c 300 ProSitePatterns PS00683 Rhodanese C-terminal signature. 270 280 - T 11-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 AMK58_07685 eaa3877282dcdb7f0e34a8d6d0be058c 300 SUPERFAMILY SSF52821 166 295 2.62E-34 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily AMK58_07685 eaa3877282dcdb7f0e34a8d6d0be058c 300 Gene3D G3DSA:3.40.250.10 161 286 1.8E-38 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily AMK58_07685 eaa3877282dcdb7f0e34a8d6d0be058c 300 SMART SM00450 164 286 7.1E-18 T 11-10-2018 IPR001763 Rhodanese-like domain AMK58_07685 eaa3877282dcdb7f0e34a8d6d0be058c 300 SMART SM00450 15 141 1.7E-19 T 11-10-2018 IPR001763 Rhodanese-like domain AMK58_07685 eaa3877282dcdb7f0e34a8d6d0be058c 300 SUPERFAMILY SSF52821 12 162 9.3E-42 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily AMK58_07685 eaa3877282dcdb7f0e34a8d6d0be058c 300 Pfam PF00581 Rhodanese-like domain 166 281 7.9E-12 T 11-10-2018 IPR001763 Rhodanese-like domain AMK58_07685 eaa3877282dcdb7f0e34a8d6d0be058c 300 Pfam PF00581 Rhodanese-like domain 18 137 9.4E-15 T 11-10-2018 IPR001763 Rhodanese-like domain AMK58_07685 eaa3877282dcdb7f0e34a8d6d0be058c 300 Gene3D G3DSA:3.40.250.10 6 158 5.3E-46 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily AMK58_07685 eaa3877282dcdb7f0e34a8d6d0be058c 300 ProSitePatterns PS00380 Rhodanese signature 1. 49 60 - T 11-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 AMK58_05590 a16d934ff32c0a70d9c8525dc09ee810 140 Gene3D G3DSA:3.40.140.10 4 139 2.7E-47 T 11-10-2018 AMK58_05590 a16d934ff32c0a70d9c8525dc09ee810 140 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 58 101 - T 11-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 AMK58_05590 a16d934ff32c0a70d9c8525dc09ee810 140 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 8 105 2.8E-12 T 11-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain AMK58_05590 a16d934ff32c0a70d9c8525dc09ee810 140 TIGRFAM TIGR01354 cyt_deam_tetra: cytidine deaminase 11 137 4.5E-42 T 11-10-2018 IPR006262 Cytidine deaminase, homotetrameric GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199|Reactome: R-HSA-6798695|Reactome: R-HSA-73614 AMK58_05590 a16d934ff32c0a70d9c8525dc09ee810 140 SUPERFAMILY SSF53927 8 138 6.02E-43 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 AMK58_08920 72cb33e44f21a70f407dab2ee928f8ef 253 SUPERFAMILY SSF51735 1 250 4.17E-82 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_08920 72cb33e44f21a70f407dab2ee928f8ef 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 247 1.9E-62 T 11-10-2018 AMK58_08920 72cb33e44f21a70f407dab2ee928f8ef 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMK58_08920 72cb33e44f21a70f407dab2ee928f8ef 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 2.7E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_08920 72cb33e44f21a70f407dab2ee928f8ef 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 2.7E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_08920 72cb33e44f21a70f407dab2ee928f8ef 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 2.7E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_08920 72cb33e44f21a70f407dab2ee928f8ef 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 2.7E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_08920 72cb33e44f21a70f407dab2ee928f8ef 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 2.7E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_08920 72cb33e44f21a70f407dab2ee928f8ef 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 2.7E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_08920 72cb33e44f21a70f407dab2ee928f8ef 253 Gene3D G3DSA:3.40.50.720 2 251 6.2E-84 T 11-10-2018 AMK58_08920 72cb33e44f21a70f407dab2ee928f8ef 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 8.2E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_08920 72cb33e44f21a70f407dab2ee928f8ef 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 8.2E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_08920 72cb33e44f21a70f407dab2ee928f8ef 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 8.2E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_05635 339ab6bfe45c810ae4efede2ec40edf9 571 Pfam PF00005 ABC transporter 353 497 1.3E-24 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_05635 339ab6bfe45c810ae4efede2ec40edf9 571 Gene3D G3DSA:3.40.50.300 328 567 1.2E-53 T 11-10-2018 AMK58_05635 339ab6bfe45c810ae4efede2ec40edf9 571 SUPERFAMILY SSF52540 335 567 4.92E-55 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_05635 339ab6bfe45c810ae4efede2ec40edf9 571 Pfam PF02653 Branched-chain amino acid transport system / permease component 36 293 4.9E-37 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_05635 339ab6bfe45c810ae4efede2ec40edf9 571 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 550 568 4.4E-6 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AMK58_05635 339ab6bfe45c810ae4efede2ec40edf9 571 SMART SM00382 361 546 9.7E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_18490 0d850c02d2ae6852fe1735eae0a50f45 298 Pfam PF03466 LysR substrate binding domain 96 294 8.2E-23 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_18490 0d850c02d2ae6852fe1735eae0a50f45 298 Gene3D G3DSA:3.40.190.10 93 293 5.2E-50 T 11-10-2018 AMK58_18490 0d850c02d2ae6852fe1735eae0a50f45 298 SUPERFAMILY SSF46785 1 82 3.63E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_18490 0d850c02d2ae6852fe1735eae0a50f45 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 1.7E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_18490 0d850c02d2ae6852fe1735eae0a50f45 298 SUPERFAMILY SSF53850 93 296 1.99E-36 T 11-10-2018 AMK58_18490 0d850c02d2ae6852fe1735eae0a50f45 298 Gene3D G3DSA:1.10.10.10 1 86 7.6E-30 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_18490 0d850c02d2ae6852fe1735eae0a50f45 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 1.1E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_18490 0d850c02d2ae6852fe1735eae0a50f45 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 1.1E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_18490 0d850c02d2ae6852fe1735eae0a50f45 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 1.1E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_18490 0d850c02d2ae6852fe1735eae0a50f45 298 Gene3D G3DSA:3.40.190.10 169 269 5.2E-50 T 11-10-2018 AMK58_28280 8c5685c4c2a8759a1bb725cef29b2074 221 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 3 207 5.3E-90 T 11-10-2018 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 Reactome: R-HSA-77108 AMK58_28280 8c5685c4c2a8759a1bb725cef29b2074 221 ProSitePatterns PS01274 Coenzyme A transferases signature 2. 43 51 - T 11-10-2018 IPR004164 Coenzyme A transferase active site GO:0008410 Reactome: R-HSA-77108 AMK58_28280 8c5685c4c2a8759a1bb725cef29b2074 221 SUPERFAMILY SSF100950 2 215 1.63E-69 T 11-10-2018 IPR037171 NagB/RpiA transferase-like AMK58_28280 8c5685c4c2a8759a1bb725cef29b2074 221 Gene3D G3DSA:3.40.1080.10 1 211 2.2E-85 T 11-10-2018 AMK58_28280 8c5685c4c2a8759a1bb725cef29b2074 221 SMART SM00882 5 200 7.8E-66 T 11-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 AMK58_28280 8c5685c4c2a8759a1bb725cef29b2074 221 Pfam PF01144 Coenzyme A transferase 5 198 4.2E-35 T 11-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 AMK58_23770 c76701d7489c00278f6e058ac5882679 371 Pfam PF01145 SPFH domain / Band 7 family 53 247 5.7E-16 T 11-10-2018 IPR001107 Band 7 domain AMK58_23770 c76701d7489c00278f6e058ac5882679 371 SUPERFAMILY SSF117892 85 238 5.49E-5 T 11-10-2018 IPR036013 Band 7/SPFH domain superfamily AMK58_03840 96129f2b8b010e26e6d6f34907b8b74c 395 Pfam PF04344 Chemotaxis phosphatase, CheZ 152 240 9.9E-8 T 11-10-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 AMK58_03840 96129f2b8b010e26e6d6f34907b8b74c 395 SUPERFAMILY SSF75708 71 240 6.8E-39 T 11-10-2018 AMK58_03840 96129f2b8b010e26e6d6f34907b8b74c 395 Gene3D G3DSA:1.10.287.500 147 192 1.1E-5 T 11-10-2018 AMK58_07655 170528ffd97d4deb77a0f87c9632086b 372 SUPERFAMILY SSF161098 159 352 2.75E-41 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_07655 170528ffd97d4deb77a0f87c9632086b 372 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 160 258 1.1E-18 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMK58_07655 170528ffd97d4deb77a0f87c9632086b 372 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 181 367 1.6E-22 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_07655 170528ffd97d4deb77a0f87c9632086b 372 Gene3D G3DSA:1.10.3720.10 154 372 3.1E-47 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_02275 8ba20c4f459a26c84375dca62d849761 201 Gene3D G3DSA:3.40.30.10 3 191 2.4E-71 T 11-10-2018 AMK58_02275 8ba20c4f459a26c84375dca62d849761 201 Gene3D G3DSA:1.20.1050.10 83 188 2.4E-71 T 11-10-2018 AMK58_02275 8ba20c4f459a26c84375dca62d849761 201 SUPERFAMILY SSF52833 1 85 2.93E-18 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_02275 8ba20c4f459a26c84375dca62d849761 201 Pfam PF00043 Glutathione S-transferase, C-terminal domain 104 189 2.2E-16 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal AMK58_02275 8ba20c4f459a26c84375dca62d849761 201 SUPERFAMILY SSF47616 81 198 2.78E-32 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMK58_02275 8ba20c4f459a26c84375dca62d849761 201 Pfam PF02798 Glutathione S-transferase, N-terminal domain 1 74 7.4E-11 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMK58_06125 8bec5335b91cdcd67fa073e3ed26ef97 404 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 11 404 49.347 T 11-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06125 8bec5335b91cdcd67fa073e3ed26ef97 404 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 57 68 - T 11-10-2018 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06125 8bec5335b91cdcd67fa073e3ed26ef97 404 SUPERFAMILY SSF56762 30 404 4.32E-143 T 11-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06125 8bec5335b91cdcd67fa073e3ed26ef97 404 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 21 404 3.9E-184 T 11-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06125 8bec5335b91cdcd67fa073e3ed26ef97 404 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 134 404 5.3E-129 T 11-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06125 8bec5335b91cdcd67fa073e3ed26ef97 404 Gene3D G3DSA:1.10.645.20 18 404 2.5E-180 T 11-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_26025 88c9e2bc6f3e37577c4be06e9d2c3e40 126 SUPERFAMILY SSF54427 3 125 4.59E-41 T 11-10-2018 IPR032710 NTF2-like domain superfamily AMK58_26025 88c9e2bc6f3e37577c4be06e9d2c3e40 126 Gene3D G3DSA:3.10.450.50 1 126 2.6E-52 T 11-10-2018 AMK58_26025 88c9e2bc6f3e37577c4be06e9d2c3e40 126 Pfam PF11533 Protein of unknown function (DUF3225) 4 125 2.7E-61 T 11-10-2018 IPR024507 Protein of unknown function DUF3225 AMK58_28755 5aca7ab6e032cd8f7e8b6ad5c2445584 494 SUPERFAMILY SSF53448 3 206 7.23E-47 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_28755 5aca7ab6e032cd8f7e8b6ad5c2445584 494 Gene3D G3DSA:3.40.50.20 367 436 1.9E-5 T 11-10-2018 AMK58_28755 5aca7ab6e032cd8f7e8b6ad5c2445584 494 Gene3D G3DSA:3.90.550.10 1 220 3.2E-46 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_28755 5aca7ab6e032cd8f7e8b6ad5c2445584 494 Pfam PF00535 Glycosyl transferase family 2 9 123 1.0E-18 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMK58_21920 919969decabb72afc952369461efc9f1 353 Gene3D G3DSA:3.40.800.20 1 347 2.5E-118 T 11-10-2018 IPR037138 Histone deacetylase domain superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AMK58_21920 919969decabb72afc952369461efc9f1 353 Pfam PF00850 Histone deacetylase domain 27 340 3.4E-69 T 11-10-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AMK58_21920 919969decabb72afc952369461efc9f1 353 PRINTS PR01270 Histone deacetylase superfamily signature 279 289 1.7E-8 T 11-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AMK58_21920 919969decabb72afc952369461efc9f1 353 PRINTS PR01270 Histone deacetylase superfamily signature 155 178 1.7E-8 T 11-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AMK58_21920 919969decabb72afc952369461efc9f1 353 SUPERFAMILY SSF52768 3 346 3.79E-89 T 11-10-2018 IPR023696 Ureohydrolase domain superfamily AMK58_23550 253cd63cef8d4cdfdd3bde6e62ec66d7 804 SMART SM00304 361 413 2.1E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_23550 253cd63cef8d4cdfdd3bde6e62ec66d7 804 Gene3D G3DSA:1.20.58.920 60 182 7.9E-9 T 11-10-2018 IPR038188 TorS, sensor domain superfamily AMK58_23550 253cd63cef8d4cdfdd3bde6e62ec66d7 804 Pfam PF00512 His Kinase A (phospho-acceptor) domain 583 648 1.4E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_23550 253cd63cef8d4cdfdd3bde6e62ec66d7 804 SMART SM00387 695 804 2.9E-26 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_23550 253cd63cef8d4cdfdd3bde6e62ec66d7 804 Gene3D G3DSA:1.10.287.130 561 646 6.3E-19 T 11-10-2018 AMK58_23550 253cd63cef8d4cdfdd3bde6e62ec66d7 804 PRINTS PR00344 Bacterial sensor protein C-terminal signature 734 748 4.1E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_23550 253cd63cef8d4cdfdd3bde6e62ec66d7 804 PRINTS PR00344 Bacterial sensor protein C-terminal signature 789 802 4.1E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_23550 253cd63cef8d4cdfdd3bde6e62ec66d7 804 PRINTS PR00344 Bacterial sensor protein C-terminal signature 752 762 4.1E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_23550 253cd63cef8d4cdfdd3bde6e62ec66d7 804 PRINTS PR00344 Bacterial sensor protein C-terminal signature 765 783 4.1E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_23550 253cd63cef8d4cdfdd3bde6e62ec66d7 804 Pfam PF08448 PAS fold 421 530 3.7E-6 T 11-10-2018 IPR013656 PAS fold-4 AMK58_23550 253cd63cef8d4cdfdd3bde6e62ec66d7 804 Gene3D G3DSA:3.30.450.20 415 560 4.7E-12 T 11-10-2018 AMK58_23550 253cd63cef8d4cdfdd3bde6e62ec66d7 804 SUPERFAMILY SSF47384 580 648 2.35E-9 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_23550 253cd63cef8d4cdfdd3bde6e62ec66d7 804 Gene3D G3DSA:1.20.1480.50 319 414 4.7E-10 T 11-10-2018 AMK58_23550 253cd63cef8d4cdfdd3bde6e62ec66d7 804 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 413 535 1.6E-6 T 11-10-2018 IPR000014 PAS domain AMK58_23550 253cd63cef8d4cdfdd3bde6e62ec66d7 804 SUPERFAMILY SSF55785 426 538 8.86E-13 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_23550 253cd63cef8d4cdfdd3bde6e62ec66d7 804 Pfam PF00672 HAMP domain 361 408 1.2E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_23550 253cd63cef8d4cdfdd3bde6e62ec66d7 804 Gene3D G3DSA:3.30.565.10 653 804 5.0E-38 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_23550 253cd63cef8d4cdfdd3bde6e62ec66d7 804 SMART SM00388 583 651 3.9E-5 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_23550 253cd63cef8d4cdfdd3bde6e62ec66d7 804 PIRSF PIRSF037119 14 804 4.7E-124 T 11-10-2018 IPR017116 Signal transduction histidine kinase, PgtB AMK58_23550 253cd63cef8d4cdfdd3bde6e62ec66d7 804 SUPERFAMILY SSF158472 361 407 1.44E-6 T 11-10-2018 AMK58_23550 253cd63cef8d4cdfdd3bde6e62ec66d7 804 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 697 801 7.4E-19 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_23550 253cd63cef8d4cdfdd3bde6e62ec66d7 804 SMART SM00086 489 529 0.007 T 11-10-2018 IPR001610 PAC motif AMK58_23550 253cd63cef8d4cdfdd3bde6e62ec66d7 804 SUPERFAMILY SSF55874 640 801 1.11E-36 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_02045 bdea22ed94d223bb0f073924ededd6f8 336 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 9 162 2.5E-45 T 11-10-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMK58_02045 bdea22ed94d223bb0f073924ededd6f8 336 SUPERFAMILY SSF51735 6 183 1.97E-47 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_02045 bdea22ed94d223bb0f073924ededd6f8 336 Gene3D G3DSA:1.10.1040.10 192 336 2.7E-46 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMK58_02045 bdea22ed94d223bb0f073924ededd6f8 336 SUPERFAMILY SSF48179 182 334 2.72E-50 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMK58_02045 bdea22ed94d223bb0f073924ededd6f8 336 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 241 258 4.6E-37 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMK58_02045 bdea22ed94d223bb0f073924ededd6f8 336 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 176 200 4.6E-37 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMK58_02045 bdea22ed94d223bb0f073924ededd6f8 336 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 11 28 4.6E-37 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMK58_02045 bdea22ed94d223bb0f073924ededd6f8 336 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 61 88 4.6E-37 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMK58_02045 bdea22ed94d223bb0f073924ededd6f8 336 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 201 225 4.6E-37 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMK58_02045 bdea22ed94d223bb0f073924ededd6f8 336 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 136 156 4.6E-37 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMK58_02045 bdea22ed94d223bb0f073924ededd6f8 336 Gene3D G3DSA:3.40.50.720 2 190 7.7E-56 T 11-10-2018 AMK58_02045 bdea22ed94d223bb0f073924ededd6f8 336 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 191 212 - T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMK58_02045 bdea22ed94d223bb0f073924ededd6f8 336 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 7 325 36.683 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMK58_02045 bdea22ed94d223bb0f073924ededd6f8 336 PIRSF PIRSF000114 2 335 1.9E-94 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMK58_02045 bdea22ed94d223bb0f073924ededd6f8 336 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 183 321 1.6E-46 T 11-10-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMK58_27160 1c70dee4ec3b3a57be17f690f7d6ae79 479 Gene3D G3DSA:3.40.605.10 27 468 4.6E-158 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMK58_27160 1c70dee4ec3b3a57be17f690f7d6ae79 479 SUPERFAMILY SSF53720 5 473 9.56E-150 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMK58_27160 1c70dee4ec3b3a57be17f690f7d6ae79 479 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 246 253 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AMK58_27160 1c70dee4ec3b3a57be17f690f7d6ae79 479 Pfam PF00171 Aldehyde dehydrogenase family 13 472 4.9E-150 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMK58_27160 1c70dee4ec3b3a57be17f690f7d6ae79 479 Gene3D G3DSA:3.40.309.10 250 441 4.6E-158 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMK58_27095 82ba86cb896973a050b13b5ae88608c3 137 Gene3D G3DSA:3.30.1330.40 24 137 1.8E-29 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMK58_27095 82ba86cb896973a050b13b5ae88608c3 137 Pfam PF01042 Endoribonuclease L-PSP 37 136 2.3E-22 T 11-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 AMK58_27095 82ba86cb896973a050b13b5ae88608c3 137 SUPERFAMILY SSF55298 37 136 1.73E-27 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMK58_01285 304ba1e6e5556062be8f4336f8008672 319 Pfam PF08239 Bacterial SH3 domain 54 103 2.2E-6 T 11-10-2018 IPR003646 SH3-like domain, bacterial-type AMK58_01285 304ba1e6e5556062be8f4336f8008672 319 Gene3D G3DSA:2.30.30.40 43 106 2.9E-6 T 11-10-2018 AMK58_13720 6b37ce8ee5e92037d4db99f163b02773 639 Gene3D G3DSA:3.30.420.40 5 372 2.0E-163 T 11-10-2018 AMK58_13720 6b37ce8ee5e92037d4db99f163b02773 639 SUPERFAMILY SSF53067 1 183 2.54E-65 T 11-10-2018 AMK58_13720 6b37ce8ee5e92037d4db99f163b02773 639 SUPERFAMILY SSF53067 187 377 6.17E-68 T 11-10-2018 AMK58_13720 6b37ce8ee5e92037d4db99f163b02773 639 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 599 5.7E-302 T 11-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 AMK58_13720 6b37ce8ee5e92037d4db99f163b02773 639 Gene3D G3DSA:3.30.420.40 184 357 2.0E-163 T 11-10-2018 AMK58_13720 6b37ce8ee5e92037d4db99f163b02773 639 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 191 204 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AMK58_13720 6b37ce8ee5e92037d4db99f163b02773 639 Gene3D G3DSA:2.60.34.10 378 518 1.2E-65 T 11-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 AMK58_13720 6b37ce8ee5e92037d4db99f163b02773 639 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 631 37.949 T 11-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 AMK58_13720 6b37ce8ee5e92037d4db99f163b02773 639 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 332 346 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AMK58_13720 6b37ce8ee5e92037d4db99f163b02773 639 SUPERFAMILY SSF100934 502 600 1.96E-19 T 11-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 AMK58_13720 6b37ce8ee5e92037d4db99f163b02773 639 Gene3D G3DSA:3.90.640.10 223 310 2.0E-163 T 11-10-2018 AMK58_13720 6b37ce8ee5e92037d4db99f163b02773 639 PRINTS PR00301 70kDa heat shock protein signature 31 43 6.1E-80 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMK58_13720 6b37ce8ee5e92037d4db99f163b02773 639 PRINTS PR00301 70kDa heat shock protein signature 360 380 6.1E-80 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMK58_13720 6b37ce8ee5e92037d4db99f163b02773 639 PRINTS PR00301 70kDa heat shock protein signature 54 62 6.1E-80 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMK58_13720 6b37ce8ee5e92037d4db99f163b02773 639 PRINTS PR00301 70kDa heat shock protein signature 197 207 6.1E-80 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMK58_13720 6b37ce8ee5e92037d4db99f163b02773 639 PRINTS PR00301 70kDa heat shock protein signature 138 158 6.1E-80 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMK58_13720 6b37ce8ee5e92037d4db99f163b02773 639 PRINTS PR00301 70kDa heat shock protein signature 464 480 6.1E-80 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMK58_13720 6b37ce8ee5e92037d4db99f163b02773 639 PRINTS PR00301 70kDa heat shock protein signature 3 16 6.1E-80 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMK58_13720 6b37ce8ee5e92037d4db99f163b02773 639 PRINTS PR00301 70kDa heat shock protein signature 329 345 6.1E-80 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMK58_13720 6b37ce8ee5e92037d4db99f163b02773 639 PRINTS PR00301 70kDa heat shock protein signature 383 402 6.1E-80 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMK58_13720 6b37ce8ee5e92037d4db99f163b02773 639 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AMK58_13720 6b37ce8ee5e92037d4db99f163b02773 639 Pfam PF00012 Hsp70 protein 4 599 7.9E-277 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMK58_13720 6b37ce8ee5e92037d4db99f163b02773 639 SUPERFAMILY SSF100920 379 535 1.19E-62 T 11-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 AMK58_13720 6b37ce8ee5e92037d4db99f163b02773 639 Gene3D G3DSA:1.20.1270.10 519 601 1.4E-28 T 11-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 AMK58_13720 6b37ce8ee5e92037d4db99f163b02773 639 Gene3D G3DSA:3.30.30.30 67 118 2.0E-163 T 11-10-2018 AMK58_06260 8cc7afe1d23d478efbe1732009211277 309 SUPERFAMILY SSF54713 56 145 4.36E-19 T 11-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 AMK58_06260 8cc7afe1d23d478efbe1732009211277 309 Gene3D G3DSA:1.10.8.10 1 56 1.6E-28 T 11-10-2018 AMK58_06260 8cc7afe1d23d478efbe1732009211277 309 SUPERFAMILY SSF54713 150 307 1.24E-46 T 11-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 AMK58_06260 8cc7afe1d23d478efbe1732009211277 309 Gene3D G3DSA:1.10.286.20 203 247 1.2E-43 T 11-10-2018 AMK58_06260 8cc7afe1d23d478efbe1732009211277 309 SUPERFAMILY SSF46934 4 55 1.4E-19 T 11-10-2018 IPR009060 UBA-like superfamily GO:0005515 AMK58_06260 8cc7afe1d23d478efbe1732009211277 309 Gene3D G3DSA:3.30.479.20 57 147 2.7E-23 T 11-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 AMK58_06260 8cc7afe1d23d478efbe1732009211277 309 ProSitePatterns PS01126 Elongation factor Ts signature 1. 12 27 - T 11-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMK58_06260 8cc7afe1d23d478efbe1732009211277 309 ProSitePatterns PS01127 Elongation factor Ts signature 2. 75 85 - T 11-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMK58_06260 8cc7afe1d23d478efbe1732009211277 309 Hamap MF_00050 Elongation factor Ts [tsf]. 1 306 77.498 T 11-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMK58_06260 8cc7afe1d23d478efbe1732009211277 309 Gene3D G3DSA:3.30.479.20 150 288 1.2E-43 T 11-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 AMK58_06260 8cc7afe1d23d478efbe1732009211277 309 Pfam PF00889 Elongation factor TS 71 289 3.3E-68 T 11-10-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0006414 Reactome: R-HSA-5389840 AMK58_06260 8cc7afe1d23d478efbe1732009211277 309 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 306 5.2E-94 T 11-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMK58_27185 81ff872079bfba712b1d822d75216fde 335 Pfam PF00005 ABC transporter 43 193 1.4E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_27185 81ff872079bfba712b1d822d75216fde 335 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 243 329 1.9E-26 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMK58_27185 81ff872079bfba712b1d822d75216fde 335 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 245 309 6.8E-18 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMK58_27185 81ff872079bfba712b1d822d75216fde 335 Gene3D G3DSA:3.40.50.300 6 334 3.3E-96 T 11-10-2018 AMK58_27185 81ff872079bfba712b1d822d75216fde 335 ProSitePatterns PS00211 ABC transporters family signature. 166 180 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_27185 81ff872079bfba712b1d822d75216fde 335 SMART SM00382 51 243 1.7E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_27185 81ff872079bfba712b1d822d75216fde 335 SUPERFAMILY SSF52540 51 321 1.45E-68 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_19055 916d9785d1e78e6e61dd7fffe81c1ba9 317 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 2.4E-21 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_19055 916d9785d1e78e6e61dd7fffe81c1ba9 317 Pfam PF03466 LysR substrate binding domain 93 292 1.6E-43 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_19055 916d9785d1e78e6e61dd7fffe81c1ba9 317 Gene3D G3DSA:3.40.190.10 103 288 3.0E-64 T 11-10-2018 AMK58_19055 916d9785d1e78e6e61dd7fffe81c1ba9 317 SUPERFAMILY SSF46785 2 86 9.68E-25 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_19055 916d9785d1e78e6e61dd7fffe81c1ba9 317 Gene3D G3DSA:1.10.10.10 7 91 1.6E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_19055 916d9785d1e78e6e61dd7fffe81c1ba9 317 Gene3D G3DSA:3.40.190.10 163 261 3.0E-64 T 11-10-2018 AMK58_19055 916d9785d1e78e6e61dd7fffe81c1ba9 317 SUPERFAMILY SSF53850 93 295 2.53E-44 T 11-10-2018 AMK58_19055 916d9785d1e78e6e61dd7fffe81c1ba9 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 1.2E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_19055 916d9785d1e78e6e61dd7fffe81c1ba9 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 1.2E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_19055 916d9785d1e78e6e61dd7fffe81c1ba9 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 1.2E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_16185 b18e4b9bc61978b57617125204c909dc 458 Gene3D G3DSA:3.40.190.10 140 444 1.1E-118 T 11-10-2018 AMK58_16185 b18e4b9bc61978b57617125204c909dc 458 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 22 376 2.3E-84 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain AMK58_16185 b18e4b9bc61978b57617125204c909dc 458 Gene3D G3DSA:3.90.76.10 6 139 1.1E-118 T 11-10-2018 AMK58_16185 b18e4b9bc61978b57617125204c909dc 458 Gene3D G3DSA:3.10.105.10 221 432 1.1E-118 T 11-10-2018 AMK58_16185 b18e4b9bc61978b57617125204c909dc 458 PIRSF PIRSF002741 2 455 1.6E-99 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMK58_16185 b18e4b9bc61978b57617125204c909dc 458 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 28 49 - T 11-10-2018 IPR023765 Solute-binding protein family 5, conserved site AMK58_16185 b18e4b9bc61978b57617125204c909dc 458 SUPERFAMILY SSF53850 4 448 5.07E-122 T 11-10-2018 AMK58_06720 410b12c71e80f7ba3b4b0937072b0f13 160 Gene3D G3DSA:3.30.230.10 32 160 1.0E-50 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMK58_06720 410b12c71e80f7ba3b4b0937072b0f13 160 Pfam PF00380 Ribosomal protein S9/S16 40 160 1.9E-46 T 11-10-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 AMK58_06720 410b12c71e80f7ba3b4b0937072b0f13 160 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 31 160 32.814 T 11-10-2018 IPR023035 Ribosomal protein S9, bacterial/plastid AMK58_06720 410b12c71e80f7ba3b4b0937072b0f13 160 ProSitePatterns PS00360 Ribosomal protein S9 signature. 99 117 - T 11-10-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 AMK58_06720 410b12c71e80f7ba3b4b0937072b0f13 160 SUPERFAMILY SSF54211 35 160 3.79E-48 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMK58_19560 a28970fd62d2b1266ec5c0dc6e907e68 366 SMART SM00448 1 113 1.0E-18 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_19560 a28970fd62d2b1266ec5c0dc6e907e68 366 Gene3D G3DSA:3.40.50.2300 1 138 7.6E-27 T 11-10-2018 AMK58_19560 a28970fd62d2b1266ec5c0dc6e907e68 366 Pfam PF00072 Response regulator receiver domain 1 109 7.5E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_19560 a28970fd62d2b1266ec5c0dc6e907e68 366 Gene3D G3DSA:3.40.50.180 169 365 1.1E-64 T 11-10-2018 IPR035909 Methylesterase CheB, C-terminal AMK58_19560 a28970fd62d2b1266ec5c0dc6e907e68 366 PIRSF PIRSF000876 1 366 9.7E-125 T 11-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AMK58_19560 a28970fd62d2b1266ec5c0dc6e907e68 366 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 1 363 32.743 T 11-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AMK58_19560 a28970fd62d2b1266ec5c0dc6e907e68 366 SUPERFAMILY SSF52172 1 109 6.55E-25 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_19560 a28970fd62d2b1266ec5c0dc6e907e68 366 SUPERFAMILY SSF52738 175 363 6.67E-63 T 11-10-2018 IPR035909 Methylesterase CheB, C-terminal AMK58_19560 a28970fd62d2b1266ec5c0dc6e907e68 366 Pfam PF01339 CheB methylesterase 178 358 3.1E-55 T 11-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AMK58_14550 597ec2cbdf38982ca6598f728346816b 316 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 227 290 2.6E-6 T 11-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal AMK58_14550 597ec2cbdf38982ca6598f728346816b 316 Gene3D G3DSA:3.30.390.50 223 316 2.6E-25 T 11-10-2018 AMK58_14550 597ec2cbdf38982ca6598f728346816b 316 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 3 221 3.3E-51 T 11-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 AMK58_14550 597ec2cbdf38982ca6598f728346816b 316 Gene3D G3DSA:3.30.465.10 1 222 5.3E-86 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AMK58_14550 597ec2cbdf38982ca6598f728346816b 316 SUPERFAMILY SSF56176 1 220 1.58E-58 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMK58_14550 597ec2cbdf38982ca6598f728346816b 316 SMART SM01092 226 314 6.3E-21 T 11-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal AMK58_14550 597ec2cbdf38982ca6598f728346816b 316 SUPERFAMILY SSF55447 224 314 5.1E-20 T 11-10-2018 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily AMK58_17875 7d9fa4fe332ed46811c5e4e92b114cb5 230 SUPERFAMILY SSF55874 133 229 1.28E-11 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_17875 7d9fa4fe332ed46811c5e4e92b114cb5 230 Pfam PF07568 Histidine kinase 41 113 9.6E-18 T 11-10-2018 IPR011495 Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain AMK58_17875 7d9fa4fe332ed46811c5e4e92b114cb5 230 Gene3D G3DSA:3.30.450.20 18 93 3.5E-8 T 11-10-2018 AMK58_17875 7d9fa4fe332ed46811c5e4e92b114cb5 230 Gene3D G3DSA:3.30.565.10 98 230 1.2E-20 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_13765 237a094f807e5798855e8d659d8bc53e 200 SUPERFAMILY SSF52972 8 198 2.15E-64 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AMK58_13765 237a094f807e5798855e8d659d8bc53e 200 Pfam PF01725 Ham1 family 13 196 4.7E-53 T 11-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 AMK58_13765 237a094f807e5798855e8d659d8bc53e 200 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 13 196 1.5E-46 T 11-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 AMK58_13765 237a094f807e5798855e8d659d8bc53e 200 Gene3D G3DSA:3.90.950.10 10 199 1.7E-63 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AMK58_13765 237a094f807e5798855e8d659d8bc53e 200 Hamap MF_01405 dITP/XTP pyrophosphatase. 11 200 43.786 T 11-10-2018 IPR020922 dITP/XTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.66 AMK58_18025 ea472e0363fc07e4e54046db30f6e53e 870 SUPERFAMILY SSF47384 494 574 8.24E-12 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_18025 ea472e0363fc07e4e54046db30f6e53e 870 PRINTS PR00344 Bacterial sensor protein C-terminal signature 672 682 9.7E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_18025 ea472e0363fc07e4e54046db30f6e53e 870 PRINTS PR00344 Bacterial sensor protein C-terminal signature 654 668 9.7E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_18025 ea472e0363fc07e4e54046db30f6e53e 870 PRINTS PR00344 Bacterial sensor protein C-terminal signature 689 707 9.7E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_18025 ea472e0363fc07e4e54046db30f6e53e 870 PRINTS PR00344 Bacterial sensor protein C-terminal signature 713 726 9.7E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_18025 ea472e0363fc07e4e54046db30f6e53e 870 SMART SM00086 449 489 0.0025 T 11-10-2018 IPR001610 PAC motif AMK58_18025 ea472e0363fc07e4e54046db30f6e53e 870 Gene3D G3DSA:3.30.450.20 369 492 6.1E-40 T 11-10-2018 AMK58_18025 ea472e0363fc07e4e54046db30f6e53e 870 Pfam PF00512 His Kinase A (phospho-acceptor) domain 509 574 2.6E-7 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_18025 ea472e0363fc07e4e54046db30f6e53e 870 Pfam PF00989 PAS fold 376 486 1.5E-16 T 11-10-2018 IPR013767 PAS fold GO:0006355 AMK58_18025 ea472e0363fc07e4e54046db30f6e53e 870 SUPERFAMILY SSF55785 384 497 2.93E-31 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_18025 ea472e0363fc07e4e54046db30f6e53e 870 Gene3D G3DSA:3.30.450.20 165 293 2.1E-6 T 11-10-2018 AMK58_18025 ea472e0363fc07e4e54046db30f6e53e 870 SMART SM00448 749 862 3.4E-19 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_18025 ea472e0363fc07e4e54046db30f6e53e 870 SMART SM00091 373 439 1.5E-12 T 11-10-2018 IPR000014 PAS domain AMK58_18025 ea472e0363fc07e4e54046db30f6e53e 870 SMART SM00388 509 574 1.2E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_18025 ea472e0363fc07e4e54046db30f6e53e 870 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 369 496 2.6E-36 T 11-10-2018 IPR000014 PAS domain AMK58_18025 ea472e0363fc07e4e54046db30f6e53e 870 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 619 727 1.1E-21 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_18025 ea472e0363fc07e4e54046db30f6e53e 870 Pfam PF00072 Response regulator receiver domain 751 862 4.1E-12 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_18025 ea472e0363fc07e4e54046db30f6e53e 870 Gene3D G3DSA:3.40.50.2300 749 868 5.4E-20 T 11-10-2018 AMK58_18025 ea472e0363fc07e4e54046db30f6e53e 870 SUPERFAMILY SSF52172 751 866 7.26E-21 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_18025 ea472e0363fc07e4e54046db30f6e53e 870 Gene3D G3DSA:3.30.565.10 581 733 3.1E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_18025 ea472e0363fc07e4e54046db30f6e53e 870 Gene3D G3DSA:1.10.287.130 495 576 1.1E-11 T 11-10-2018 AMK58_18025 ea472e0363fc07e4e54046db30f6e53e 870 SMART SM00387 618 729 7.0E-28 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_18025 ea472e0363fc07e4e54046db30f6e53e 870 SUPERFAMILY SSF55874 563 731 1.17E-38 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_26530 62e81b4a79e6bf106fb7b0d08dcb7edf 250 SUPERFAMILY SSF48008 106 235 7.32E-30 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_26530 62e81b4a79e6bf106fb7b0d08dcb7edf 250 SUPERFAMILY SSF46785 32 124 4.02E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_26530 62e81b4a79e6bf106fb7b0d08dcb7edf 250 SMART SM00895 107 231 1.1E-20 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_26530 62e81b4a79e6bf106fb7b0d08dcb7edf 250 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 71 87 2.8E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_26530 62e81b4a79e6bf106fb7b0d08dcb7edf 250 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 57 71 2.8E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_26530 62e81b4a79e6bf106fb7b0d08dcb7edf 250 Pfam PF07729 FCD domain 109 230 1.2E-30 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_26530 62e81b4a79e6bf106fb7b0d08dcb7edf 250 Gene3D G3DSA:1.20.120.530 105 241 8.7E-31 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_26530 62e81b4a79e6bf106fb7b0d08dcb7edf 250 Gene3D G3DSA:1.10.10.10 34 98 2.0E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_26530 62e81b4a79e6bf106fb7b0d08dcb7edf 250 Pfam PF00392 Bacterial regulatory proteins, gntR family 38 97 9.6E-18 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_26530 62e81b4a79e6bf106fb7b0d08dcb7edf 250 SMART SM00345 39 97 3.2E-15 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_14705 6fe93bf46c76d5177e28d7c2c0039901 292 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 184 209 - T 11-10-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 AMK58_14705 6fe93bf46c76d5177e28d7c2c0039901 292 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 188 283 1.1E-31 T 11-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 AMK58_14705 6fe93bf46c76d5177e28d7c2c0039901 292 SUPERFAMILY SSF48179 186 286 9.35E-33 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMK58_14705 6fe93bf46c76d5177e28d7c2c0039901 292 Gene3D G3DSA:1.10.1040.50 191 292 4.0E-33 T 11-10-2018 AMK58_14705 6fe93bf46c76d5177e28d7c2c0039901 292 Gene3D G3DSA:3.40.50.720 2 190 2.6E-66 T 11-10-2018 AMK58_14705 6fe93bf46c76d5177e28d7c2c0039901 292 SUPERFAMILY SSF51735 1 186 1.97E-57 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_14705 6fe93bf46c76d5177e28d7c2c0039901 292 PIRSF PIRSF000105 1 291 6.2E-82 T 11-10-2018 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 AMK58_14705 6fe93bf46c76d5177e28d7c2c0039901 292 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 6 184 5.6E-62 T 11-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 AMK58_20870 68d03451d495a42a849e1f922ee5b525 767 Gene3D G3DSA:2.40.170.20 205 767 3.1E-113 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily AMK58_20870 68d03451d495a42a849e1f922ee5b525 767 Gene3D G3DSA:2.170.130.10 75 202 1.4E-29 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily AMK58_20870 68d03451d495a42a849e1f922ee5b525 767 Pfam PF00593 TonB dependent receptor 292 764 3.5E-48 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel AMK58_20870 68d03451d495a42a849e1f922ee5b525 767 SUPERFAMILY SSF56935 54 767 4.43E-114 T 11-10-2018 AMK58_20870 68d03451d495a42a849e1f922ee5b525 767 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 93 767 8.3E-80 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 AMK58_20870 68d03451d495a42a849e1f922ee5b525 767 Pfam PF07715 TonB-dependent Receptor Plug Domain 91 191 2.4E-15 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain AMK58_10400 5415ac87c8f4c340d7201db0721f6cc0 692 Gene3D G3DSA:3.30.230.10 484 687 1.8E-88 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMK58_10400 5415ac87c8f4c340d7201db0721f6cc0 692 Gene3D G3DSA:3.30.70.870 406 483 3.6E-33 T 11-10-2018 AMK58_10400 5415ac87c8f4c340d7201db0721f6cc0 692 SMART SM00889 480 598 1.2E-66 T 11-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 AMK58_10400 5415ac87c8f4c340d7201db0721f6cc0 692 SMART SM00838 600 687 1.1E-51 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like AMK58_10400 5415ac87c8f4c340d7201db0721f6cc0 692 PRINTS PR00315 GTP-binding elongation factor signature 78 88 1.2E-15 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_10400 5415ac87c8f4c340d7201db0721f6cc0 692 PRINTS PR00315 GTP-binding elongation factor signature 94 105 1.2E-15 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_10400 5415ac87c8f4c340d7201db0721f6cc0 692 PRINTS PR00315 GTP-binding elongation factor signature 12 25 1.2E-15 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_10400 5415ac87c8f4c340d7201db0721f6cc0 692 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.2E-15 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_10400 5415ac87c8f4c340d7201db0721f6cc0 692 PRINTS PR00315 GTP-binding elongation factor signature 130 139 1.2E-15 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_10400 5415ac87c8f4c340d7201db0721f6cc0 692 SUPERFAMILY SSF54980 603 687 1.06E-28 T 11-10-2018 IPR035647 EF-G domain III/V-like AMK58_10400 5415ac87c8f4c340d7201db0721f6cc0 692 Gene3D G3DSA:2.40.30.10 290 405 7.6E-42 T 11-10-2018 AMK58_10400 5415ac87c8f4c340d7201db0721f6cc0 692 Hamap MF_00054_B Elongation factor G [fusA]. 6 691 110.092 T 11-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMK58_10400 5415ac87c8f4c340d7201db0721f6cc0 692 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site AMK58_10400 5415ac87c8f4c340d7201db0721f6cc0 692 Pfam PF03764 Elongation factor G, domain IV 479 597 5.4E-45 T 11-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 AMK58_10400 5415ac87c8f4c340d7201db0721f6cc0 692 Gene3D G3DSA:3.30.70.240 604 674 1.8E-88 T 11-10-2018 AMK58_10400 5415ac87c8f4c340d7201db0721f6cc0 692 SUPERFAMILY SSF54211 479 599 2.02E-43 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMK58_10400 5415ac87c8f4c340d7201db0721f6cc0 692 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 690 0.0 T 11-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMK58_10400 5415ac87c8f4c340d7201db0721f6cc0 692 Pfam PF14492 Elongation Factor G, domain II 404 477 8.0E-34 T 11-10-2018 AMK58_10400 5415ac87c8f4c340d7201db0721f6cc0 692 Pfam PF03144 Elongation factor Tu domain 2 324 391 5.0E-16 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AMK58_10400 5415ac87c8f4c340d7201db0721f6cc0 692 SUPERFAMILY SSF54980 402 480 7.19E-25 T 11-10-2018 IPR035647 EF-G domain III/V-like AMK58_10400 5415ac87c8f4c340d7201db0721f6cc0 692 SUPERFAMILY SSF52540 6 281 2.78E-106 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_10400 5415ac87c8f4c340d7201db0721f6cc0 692 Gene3D G3DSA:3.40.50.300 1 287 2.5E-110 T 11-10-2018 AMK58_10400 5415ac87c8f4c340d7201db0721f6cc0 692 SUPERFAMILY SSF50447 250 402 2.52E-36 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMK58_10400 5415ac87c8f4c340d7201db0721f6cc0 692 Pfam PF00009 Elongation factor Tu GTP binding domain 9 281 1.3E-68 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_10400 5415ac87c8f4c340d7201db0721f6cc0 692 Pfam PF00679 Elongation factor G C-terminus 601 685 2.0E-29 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like AMK58_10400 5415ac87c8f4c340d7201db0721f6cc0 692 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 10 179 4.6E-34 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMK58_19340 5d968eb6ecdf952c8b1c8d66563109d6 192 SUPERFAMILY SSF50249 20 83 4.19E-16 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_19340 5d968eb6ecdf952c8b1c8d66563109d6 192 SUPERFAMILY SSF50249 126 191 3.43E-19 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_19340 5d968eb6ecdf952c8b1c8d66563109d6 192 ProSitePatterns PS00352 'Cold-shock' domain signature. 140 159 - T 11-10-2018 IPR019844 Cold-shock conserved site AMK58_19340 5d968eb6ecdf952c8b1c8d66563109d6 192 PRINTS PR00050 Cold shock protein signature 150 159 1.0E-11 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_19340 5d968eb6ecdf952c8b1c8d66563109d6 192 PRINTS PR00050 Cold shock protein signature 165 183 1.0E-11 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_19340 5d968eb6ecdf952c8b1c8d66563109d6 192 PRINTS PR00050 Cold shock protein signature 129 144 1.0E-11 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_19340 5d968eb6ecdf952c8b1c8d66563109d6 192 Pfam PF00313 'Cold-shock' DNA-binding domain 21 82 1.7E-14 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_19340 5d968eb6ecdf952c8b1c8d66563109d6 192 Pfam PF00313 'Cold-shock' DNA-binding domain 128 190 1.0E-21 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_19340 5d968eb6ecdf952c8b1c8d66563109d6 192 SMART SM00357 21 85 2.0E-10 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 AMK58_19340 5d968eb6ecdf952c8b1c8d66563109d6 192 SMART SM00357 128 192 2.5E-19 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 AMK58_19340 5d968eb6ecdf952c8b1c8d66563109d6 192 Gene3D G3DSA:2.40.50.140 124 192 1.4E-22 T 11-10-2018 AMK58_19340 5d968eb6ecdf952c8b1c8d66563109d6 192 Gene3D G3DSA:2.40.50.140 13 94 1.4E-17 T 11-10-2018 AMK58_05680 6c373a48f925c1b19c85e0c0fecc3ae9 772 SUPERFAMILY SSF56003 132 766 1.7E-192 T 11-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 AMK58_05680 6c373a48f925c1b19c85e0c0fecc3ae9 772 SMART SM01008 20 140 4.5E-50 T 11-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMK58_05680 6c373a48f925c1b19c85e0c0fecc3ae9 772 Gene3D G3DSA:3.30.365.10 19 293 1.8E-111 T 11-10-2018 AMK58_05680 6c373a48f925c1b19c85e0c0fecc3ae9 772 Gene3D G3DSA:3.90.1170.50 35 140 1.8E-111 T 11-10-2018 AMK58_05680 6c373a48f925c1b19c85e0c0fecc3ae9 772 Gene3D G3DSA:3.30.365.10 466 615 3.1E-121 T 11-10-2018 AMK58_05680 6c373a48f925c1b19c85e0c0fecc3ae9 772 Gene3D G3DSA:3.30.365.10 141 371 1.8E-111 T 11-10-2018 AMK58_05680 6c373a48f925c1b19c85e0c0fecc3ae9 772 SUPERFAMILY SSF54665 4 162 5.89E-45 T 11-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily AMK58_05680 6c373a48f925c1b19c85e0c0fecc3ae9 772 Gene3D G3DSA:3.30.365.10 379 741 3.1E-121 T 11-10-2018 AMK58_05680 6c373a48f925c1b19c85e0c0fecc3ae9 772 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 158 701 3.9E-166 T 11-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMK58_05680 6c373a48f925c1b19c85e0c0fecc3ae9 772 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 20 140 1.2E-27 T 11-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMK58_01605 ae06fbde9351e3302d527b88176d0077 459 SUPERFAMILY SSF47384 239 312 3.14E-14 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_01605 ae06fbde9351e3302d527b88176d0077 459 Pfam PF00512 His Kinase A (phospho-acceptor) domain 256 311 2.1E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_01605 ae06fbde9351e3302d527b88176d0077 459 SMART SM00387 352 459 2.0E-25 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_01605 ae06fbde9351e3302d527b88176d0077 459 SUPERFAMILY SSF55874 312 459 6.55E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_01605 ae06fbde9351e3302d527b88176d0077 459 Gene3D G3DSA:3.30.565.10 317 459 1.3E-30 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_01605 ae06fbde9351e3302d527b88176d0077 459 SMART SM00388 255 313 1.0E-10 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_01605 ae06fbde9351e3302d527b88176d0077 459 Gene3D G3DSA:1.10.287.130 199 309 6.3E-20 T 11-10-2018 AMK58_01605 ae06fbde9351e3302d527b88176d0077 459 PRINTS PR00344 Bacterial sensor protein C-terminal signature 445 458 1.1E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_01605 ae06fbde9351e3302d527b88176d0077 459 PRINTS PR00344 Bacterial sensor protein C-terminal signature 386 400 1.1E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_01605 ae06fbde9351e3302d527b88176d0077 459 PRINTS PR00344 Bacterial sensor protein C-terminal signature 404 414 1.1E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_01605 ae06fbde9351e3302d527b88176d0077 459 PRINTS PR00344 Bacterial sensor protein C-terminal signature 421 439 1.1E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_01605 ae06fbde9351e3302d527b88176d0077 459 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 354 458 2.6E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_01605 ae06fbde9351e3302d527b88176d0077 459 Pfam PF00672 HAMP domain 202 250 7.9E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_01605 ae06fbde9351e3302d527b88176d0077 459 SMART SM00304 202 254 4.0E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_22055 997b5dc528078d23d19525f19ff7de17 208 SUPERFAMILY SSF52172 10 98 2.65E-6 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_22055 997b5dc528078d23d19525f19ff7de17 208 Gene3D G3DSA:3.40.50.12740 1 196 4.3E-26 T 11-10-2018 AMK58_22055 997b5dc528078d23d19525f19ff7de17 208 Pfam PF00196 Bacterial regulatory proteins, luxR family 139 193 8.4E-18 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_22055 997b5dc528078d23d19525f19ff7de17 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 139 153 2.3E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_22055 997b5dc528078d23d19525f19ff7de17 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 169 181 2.3E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_22055 997b5dc528078d23d19525f19ff7de17 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 153 169 2.3E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_22055 997b5dc528078d23d19525f19ff7de17 208 SUPERFAMILY SSF46894 131 194 4.42E-18 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMK58_22055 997b5dc528078d23d19525f19ff7de17 208 SMART SM00421 136 193 3.0E-21 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_00740 efa9197a899700bd71f1cad69ad621e0 104 Gene3D G3DSA:3.30.70.100 1 95 4.1E-35 T 11-10-2018 AMK58_00740 efa9197a899700bd71f1cad69ad621e0 104 Pfam PF03992 Antibiotic biosynthesis monooxygenase 5 76 2.7E-11 T 11-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain AMK58_00740 efa9197a899700bd71f1cad69ad621e0 104 SUPERFAMILY SSF54909 2 93 3.09E-25 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel AMK58_10405 70cde996285bc862d9a2a68198f54d96 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 35.843 T 11-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 AMK58_10405 70cde996285bc862d9a2a68198f54d96 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 1.9E-69 T 11-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 AMK58_10405 70cde996285bc862d9a2a68198f54d96 156 Gene3D G3DSA:1.10.455.10 2 156 1.2E-61 T 11-10-2018 IPR036823 Ribosomal protein S7 domain superfamily AMK58_10405 70cde996285bc862d9a2a68198f54d96 156 PIRSF PIRSF002122 2 156 8.1E-60 T 11-10-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 AMK58_10405 70cde996285bc862d9a2a68198f54d96 156 SUPERFAMILY SSF47973 1 149 4.45E-61 T 11-10-2018 IPR036823 Ribosomal protein S7 domain superfamily AMK58_10405 70cde996285bc862d9a2a68198f54d96 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 1.5E-66 T 11-10-2018 IPR023798 Ribosomal protein S7 domain AMK58_10405 70cde996285bc862d9a2a68198f54d96 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 11-10-2018 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_08295 b6b79a34eb15c623ab906011b4b8c395 154 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 1 149 23.346 T 11-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMK58_08295 b6b79a34eb15c623ab906011b4b8c395 154 Gene3D G3DSA:3.40.50.960 1 151 1.5E-49 T 11-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMK58_08295 b6b79a34eb15c623ab906011b4b8c395 154 SUPERFAMILY SSF52121 3 149 5.76E-47 T 11-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMK58_08295 b6b79a34eb15c623ab906011b4b8c395 154 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 8 144 7.4E-30 T 11-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMK58_08295 b6b79a34eb15c623ab906011b4b8c395 154 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 6 146 4.9E-43 T 11-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMK58_26585 407e079c802d304fdc57d9a19d21a6af 225 Gene3D G3DSA:1.10.150.240 20 83 8.8E-31 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 AMK58_26585 407e079c802d304fdc57d9a19d21a6af 225 Gene3D G3DSA:3.40.50.1000 84 223 8.8E-41 T 11-10-2018 IPR023214 HAD superfamily AMK58_26585 407e079c802d304fdc57d9a19d21a6af 225 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 80 182 4.4E-9 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMK58_26585 407e079c802d304fdc57d9a19d21a6af 225 Pfam PF13419 Haloacid dehalogenase-like hydrolase 9 187 1.7E-28 T 11-10-2018 AMK58_26585 407e079c802d304fdc57d9a19d21a6af 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 5 16 5.5E-6 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMK58_26585 407e079c802d304fdc57d9a19d21a6af 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 133 149 5.5E-6 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMK58_26585 407e079c802d304fdc57d9a19d21a6af 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 151 171 5.5E-6 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMK58_26585 407e079c802d304fdc57d9a19d21a6af 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 102 115 5.5E-6 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMK58_26585 407e079c802d304fdc57d9a19d21a6af 225 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 87 188 4.9E-9 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMK58_26585 407e079c802d304fdc57d9a19d21a6af 225 SUPERFAMILY SSF56784 6 219 5.29E-56 T 11-10-2018 IPR036412 HAD-like superfamily AMK58_19780 05777fdc77f9bbd150936c25a59e7123 379 Pfam PF01924 Hydrogenase formation hypA family 13 369 4.6E-154 T 11-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 AMK58_19780 05777fdc77f9bbd150936c25a59e7123 379 TIGRFAM TIGR00075 hypD: hydrogenase expression/formation protein HypD 2 372 8.2E-142 T 11-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 AMK58_19780 05777fdc77f9bbd150936c25a59e7123 379 PIRSF PIRSF005622 1 374 4.2E-156 T 11-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 AMK58_19780 05777fdc77f9bbd150936c25a59e7123 379 Gene3D G3DSA:3.40.50.11750 22 265 7.6E-106 T 11-10-2018 AMK58_19780 05777fdc77f9bbd150936c25a59e7123 379 Gene3D G3DSA:3.40.50.11740 61 306 7.6E-106 T 11-10-2018 AMK58_19780 05777fdc77f9bbd150936c25a59e7123 379 Gene3D G3DSA:1.10.10.2140 320 371 2.1E-24 T 11-10-2018 AMK58_08185 6a9a30c3a69bcc2baeb202cd5fac3812 244 SUPERFAMILY SSF52402 36 197 3.89E-43 T 11-10-2018 AMK58_08185 6a9a30c3a69bcc2baeb202cd5fac3812 244 Gene3D G3DSA:3.40.50.620 6 243 1.9E-55 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_08185 6a9a30c3a69bcc2baeb202cd5fac3812 244 PIRSF PIRSF000857 8 240 6.9E-73 T 11-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 AMK58_08185 6a9a30c3a69bcc2baeb202cd5fac3812 244 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 42 211 1.4E-37 T 11-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 AMK58_08790 6de23a634c4470ebc86429636bc700b5 1163 Gene3D G3DSA:3.20.20.20 332 625 1.3E-98 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMK58_08790 6de23a634c4470ebc86429636bc700b5 1163 Pfam PF02310 B12 binding domain 723 815 8.4E-19 T 11-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 AMK58_08790 6de23a634c4470ebc86429636bc700b5 1163 SUPERFAMILY SSF51717 342 611 2.09E-73 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMK58_08790 6de23a634c4470ebc86429636bc700b5 1163 Gene3D G3DSA:1.10.288.10 915 973 2.2E-59 T 11-10-2018 AMK58_08790 6de23a634c4470ebc86429636bc700b5 1163 Gene3D G3DSA:3.40.50.280 718 868 2.3E-41 T 11-10-2018 AMK58_08790 6de23a634c4470ebc86429636bc700b5 1163 Pfam PF02574 Homocysteine S-methyltransferase 13 301 9.8E-60 T 11-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 AMK58_08790 6de23a634c4470ebc86429636bc700b5 1163 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 917 1163 1.9E-42 T 11-10-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMK58_08790 6de23a634c4470ebc86429636bc700b5 1163 SUPERFAMILY SSF47644 631 714 1.44E-24 T 11-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMK58_08790 6de23a634c4470ebc86429636bc700b5 1163 SUPERFAMILY SSF82282 2 385 6.67E-102 T 11-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 AMK58_08790 6de23a634c4470ebc86429636bc700b5 1163 SMART SM01018 634 716 2.1E-42 T 11-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMK58_08790 6de23a634c4470ebc86429636bc700b5 1163 Gene3D G3DSA:1.10.1240.10 626 713 3.8E-31 T 11-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMK58_08790 6de23a634c4470ebc86429636bc700b5 1163 TIGRFAM TIGR02082 metH: methionine synthase 9 1163 0.0 T 11-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMK58_08790 6de23a634c4470ebc86429636bc700b5 1163 Pfam PF02607 B12 binding domain 636 709 1.6E-24 T 11-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMK58_08790 6de23a634c4470ebc86429636bc700b5 1163 PIRSF PIRSF000381 1 1163 0.0 T 11-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMK58_08790 6de23a634c4470ebc86429636bc700b5 1163 SUPERFAMILY SSF52242 717 847 2.09E-37 T 11-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 AMK58_08790 6de23a634c4470ebc86429636bc700b5 1163 Gene3D G3DSA:3.20.20.330 2 313 3.8E-86 T 11-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 AMK58_08790 6de23a634c4470ebc86429636bc700b5 1163 SUPERFAMILY SSF56507 888 1163 2.35E-90 T 11-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMK58_08790 6de23a634c4470ebc86429636bc700b5 1163 Gene3D G3DSA:3.10.196.10 899 1163 2.2E-59 T 11-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMK58_08790 6de23a634c4470ebc86429636bc700b5 1163 Pfam PF00809 Pterin binding enzyme 346 579 9.9E-40 T 11-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMK58_04190 30c34a49bc31ed035a5f8f223c000971 811 Gene3D G3DSA:1.10.287.950 443 744 1.3E-81 T 11-10-2018 AMK58_04190 30c34a49bc31ed035a5f8f223c000971 811 SUPERFAMILY SSF158472 322 370 1.7E-10 T 11-10-2018 AMK58_04190 30c34a49bc31ed035a5f8f223c000971 811 SMART SM00283 495 742 2.2E-99 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_04190 30c34a49bc31ed035a5f8f223c000971 811 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 516 545 2.4E-50 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_04190 30c34a49bc31ed035a5f8f223c000971 811 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 593 620 2.4E-50 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_04190 30c34a49bc31ed035a5f8f223c000971 811 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 622 651 2.4E-50 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_04190 30c34a49bc31ed035a5f8f223c000971 811 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 670 699 2.4E-50 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_04190 30c34a49bc31ed035a5f8f223c000971 811 SMART SM01358 42 293 2.9E-31 T 11-10-2018 IPR032255 Helical bimodular sensor domain AMK58_04190 30c34a49bc31ed035a5f8f223c000971 811 Pfam PF00672 HAMP domain 322 370 1.3E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_04190 30c34a49bc31ed035a5f8f223c000971 811 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 554 710 2.9E-51 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_04190 30c34a49bc31ed035a5f8f223c000971 811 SMART SM00304 442 494 0.07 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_04190 30c34a49bc31ed035a5f8f223c000971 811 SMART SM00304 322 375 1.5E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_04190 30c34a49bc31ed035a5f8f223c000971 811 SUPERFAMILY SSF58104 462 743 2.62E-72 T 11-10-2018 AMK58_04190 30c34a49bc31ed035a5f8f223c000971 811 Gene3D G3DSA:1.20.1480.50 286 382 3.5E-16 T 11-10-2018 AMK58_19740 960de2e23db395138380a762a10baad3 412 TIGRFAM TIGR00843 benE: benzoate transporter 16 388 5.4E-115 T 11-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 AMK58_19740 960de2e23db395138380a762a10baad3 412 Pfam PF03594 Benzoate membrane transport protein 17 387 3.6E-133 T 11-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 AMK58_23270 339409f4b5b145f87fc741a41145b97b 549 SUPERFAMILY SSF51905 7 444 1.63E-56 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_23270 339409f4b5b145f87fc741a41145b97b 549 Gene3D G3DSA:3.30.70.20 448 543 7.2E-41 T 11-10-2018 AMK58_23270 339409f4b5b145f87fc741a41145b97b 549 Gene3D G3DSA:3.30.9.90 82 447 8.9E-208 T 11-10-2018 AMK58_23270 339409f4b5b145f87fc741a41145b97b 549 Gene3D G3DSA:3.50.50.60 10 385 8.9E-208 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_23270 339409f4b5b145f87fc741a41145b97b 549 SUPERFAMILY SSF54373 211 307 9.02E-37 T 11-10-2018 AMK58_23270 339409f4b5b145f87fc741a41145b97b 549 Pfam PF13450 NAD(P)-binding Rossmann-like domain 15 60 2.0E-6 T 11-10-2018 AMK58_23270 339409f4b5b145f87fc741a41145b97b 549 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 179 194 6.8E-5 T 11-10-2018 AMK58_23270 339409f4b5b145f87fc741a41145b97b 549 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 12 34 6.8E-5 T 11-10-2018 AMK58_23270 339409f4b5b145f87fc741a41145b97b 549 SUPERFAMILY SSF54862 447 546 6.77E-29 T 11-10-2018 AMK58_23270 339409f4b5b145f87fc741a41145b97b 549 Pfam PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 443 545 1.4E-51 T 11-10-2018 AMK58_17645 2b51dee6114f2c498f730dd5df780bca 446 SUPERFAMILY SSF52777 221 446 4.18E-81 T 11-10-2018 AMK58_17645 2b51dee6114f2c498f730dd5df780bca 446 TIGRFAM TIGR01349 PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 5 446 3.2E-169 T 11-10-2018 IPR006257 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex GO:0004742|GO:0006090|GO:0045254 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-70268 AMK58_17645 2b51dee6114f2c498f730dd5df780bca 446 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 222 446 3.3E-84 T 11-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 AMK58_17645 2b51dee6114f2c498f730dd5df780bca 446 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 11-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 AMK58_17645 2b51dee6114f2c498f730dd5df780bca 446 Gene3D G3DSA:4.10.320.10 121 176 8.0E-19 T 11-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 AMK58_17645 2b51dee6114f2c498f730dd5df780bca 446 Pfam PF02817 e3 binding domain 134 169 2.2E-17 T 11-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 AMK58_17645 2b51dee6114f2c498f730dd5df780bca 446 SUPERFAMILY SSF51230 1 97 1.57E-29 T 11-10-2018 IPR011053 Single hybrid motif AMK58_17645 2b51dee6114f2c498f730dd5df780bca 446 Gene3D G3DSA:2.40.50.100 2 103 1.2E-33 T 11-10-2018 AMK58_17645 2b51dee6114f2c498f730dd5df780bca 446 SUPERFAMILY SSF47005 127 172 3.66E-13 T 11-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 AMK58_17645 2b51dee6114f2c498f730dd5df780bca 446 Gene3D G3DSA:3.30.559.10 207 443 1.3E-91 T 11-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 AMK58_17645 2b51dee6114f2c498f730dd5df780bca 446 Pfam PF00364 Biotin-requiring enzyme 4 77 1.5E-20 T 11-10-2018 IPR000089 Biotin/lipoyl attachment AMK58_00040 13c47278fe4ae412715d5a1f229b3053 402 Gene3D G3DSA:3.40.640.10 13 265 1.3E-78 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_00040 13c47278fe4ae412715d5a1f229b3053 402 Gene3D G3DSA:3.90.1150.10 268 402 1.1E-48 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_00040 13c47278fe4ae412715d5a1f229b3053 402 SUPERFAMILY SSF53383 37 400 1.61E-108 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_00040 13c47278fe4ae412715d5a1f229b3053 402 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 20 399 2.2E-126 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMK58_00040 13c47278fe4ae412715d5a1f229b3053 402 TIGRFAM TIGR01325 O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase 20 399 3.7E-162 T 11-10-2018 IPR006234 O-succinylhomoserine sulfhydrylase GO:0071268 AMK58_00040 13c47278fe4ae412715d5a1f229b3053 402 Hamap MF_02056 O-succinylhomoserine sulfhydrylase [metZ]. 18 400 50.85 T 11-10-2018 IPR006234 O-succinylhomoserine sulfhydrylase GO:0071268 AMK58_00040 13c47278fe4ae412715d5a1f229b3053 402 PIRSF PIRSF001434 3 402 2.4E-120 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMK58_13825 13c47278fe4ae412715d5a1f229b3053 402 Gene3D G3DSA:3.40.640.10 13 265 1.3E-78 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_13825 13c47278fe4ae412715d5a1f229b3053 402 Gene3D G3DSA:3.90.1150.10 268 402 1.1E-48 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_13825 13c47278fe4ae412715d5a1f229b3053 402 SUPERFAMILY SSF53383 37 400 1.61E-108 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_13825 13c47278fe4ae412715d5a1f229b3053 402 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 20 399 2.2E-126 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMK58_13825 13c47278fe4ae412715d5a1f229b3053 402 TIGRFAM TIGR01325 O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase 20 399 3.7E-162 T 11-10-2018 IPR006234 O-succinylhomoserine sulfhydrylase GO:0071268 AMK58_13825 13c47278fe4ae412715d5a1f229b3053 402 Hamap MF_02056 O-succinylhomoserine sulfhydrylase [metZ]. 18 400 50.85 T 11-10-2018 IPR006234 O-succinylhomoserine sulfhydrylase GO:0071268 AMK58_13825 13c47278fe4ae412715d5a1f229b3053 402 PIRSF PIRSF001434 3 402 2.4E-120 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMK58_14915 26b6456c8909f72b33075231367304aa 408 PIRSF PIRSF036428 5 408 3.2E-145 T 11-10-2018 IPR006365 Cobalamin (vitamin B12) biosynthesis CobL/Precorrin-6Y C(5,15)-methyltransferase GO:0008276|GO:0009236 KEGG: 00860+2.1.1.132 AMK58_14915 26b6456c8909f72b33075231367304aa 408 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 10 194 1.7E-19 T 11-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 AMK58_14915 26b6456c8909f72b33075231367304aa 408 TIGRFAM TIGR02467 CbiE: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit 12 203 1.1E-46 T 11-10-2018 IPR012818 Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase GO:0008276|GO:0009236 AMK58_14915 26b6456c8909f72b33075231367304aa 408 SUPERFAMILY SSF53790 9 211 8.37E-45 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 AMK58_14915 26b6456c8909f72b33075231367304aa 408 Gene3D G3DSA:3.40.50.150 221 406 1.3E-72 T 11-10-2018 AMK58_14915 26b6456c8909f72b33075231367304aa 408 TIGRFAM TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit 237 358 2.9E-33 T 11-10-2018 IPR014008 Cobalamin biosynthesis, precorrin-6Y methyltransferase, CbiT subunit GO:0008276|GO:0009236 KEGG: 00860+2.1.1.196|MetaCyc: PWY-7377 AMK58_14915 26b6456c8909f72b33075231367304aa 408 SUPERFAMILY SSF53335 216 404 8.6E-28 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_14915 26b6456c8909f72b33075231367304aa 408 Gene3D G3DSA:3.40.1010.10 7 110 4.9E-17 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 AMK58_08730 67f08c1fbd4f1c95307679b2f024711a 676 SMART SM00387 548 658 1.8E-28 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_08730 67f08c1fbd4f1c95307679b2f024711a 676 Gene3D G3DSA:3.30.450.20 283 441 6.2E-29 T 11-10-2018 AMK58_08730 67f08c1fbd4f1c95307679b2f024711a 676 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 296 419 6.4E-27 T 11-10-2018 IPR000014 PAS domain AMK58_08730 67f08c1fbd4f1c95307679b2f024711a 676 Pfam PF00512 His Kinase A (phospho-acceptor) domain 437 503 5.3E-10 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_08730 67f08c1fbd4f1c95307679b2f024711a 676 SUPERFAMILY SSF55874 497 658 6.55E-38 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_08730 67f08c1fbd4f1c95307679b2f024711a 676 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 549 656 1.4E-19 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_08730 67f08c1fbd4f1c95307679b2f024711a 676 Gene3D G3DSA:3.30.565.10 506 662 3.6E-41 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_08730 67f08c1fbd4f1c95307679b2f024711a 676 SUPERFAMILY SSF55785 283 412 2.42E-28 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_08730 67f08c1fbd4f1c95307679b2f024711a 676 PRINTS PR00344 Bacterial sensor protein C-terminal signature 618 636 4.6E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_08730 67f08c1fbd4f1c95307679b2f024711a 676 PRINTS PR00344 Bacterial sensor protein C-terminal signature 607 617 4.6E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_08730 67f08c1fbd4f1c95307679b2f024711a 676 PRINTS PR00344 Bacterial sensor protein C-terminal signature 642 655 4.6E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_08730 67f08c1fbd4f1c95307679b2f024711a 676 PRINTS PR00344 Bacterial sensor protein C-terminal signature 589 603 4.6E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_08730 67f08c1fbd4f1c95307679b2f024711a 676 Pfam PF00989 PAS fold 299 411 9.1E-18 T 11-10-2018 IPR013767 PAS fold GO:0006355 AMK58_08730 67f08c1fbd4f1c95307679b2f024711a 676 SMART SM00086 372 414 8.2E-7 T 11-10-2018 IPR001610 PAC motif AMK58_08730 67f08c1fbd4f1c95307679b2f024711a 676 Gene3D G3DSA:1.10.287.130 442 503 2.3E-20 T 11-10-2018 AMK58_08730 67f08c1fbd4f1c95307679b2f024711a 676 SMART SM00091 298 365 2.2E-9 T 11-10-2018 IPR000014 PAS domain AMK58_08730 67f08c1fbd4f1c95307679b2f024711a 676 SUPERFAMILY SSF47384 424 504 5.49E-10 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_08730 67f08c1fbd4f1c95307679b2f024711a 676 SMART SM00388 436 506 4.5E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_06965 4c090789cd82caa5bfa85fae261ad602 589 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 393 553 7.0E-34 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMK58_06965 4c090789cd82caa5bfa85fae261ad602 589 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 193 327 4.5E-35 T 11-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AMK58_06965 4c090789cd82caa5bfa85fae261ad602 589 Gene3D G3DSA:3.40.50.970 359 582 7.4E-64 T 11-10-2018 AMK58_06965 4c090789cd82caa5bfa85fae261ad602 589 SUPERFAMILY SSF52467 161 349 2.5E-48 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AMK58_06965 4c090789cd82caa5bfa85fae261ad602 589 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 8 172 5.9E-52 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AMK58_06965 4c090789cd82caa5bfa85fae261ad602 589 TIGRFAM TIGR01504 glyox_carbo_lig: glyoxylate carboligase 2 587 0.0 T 11-10-2018 IPR006397 Glyoxylate carboligase GO:0009028|GO:0009436 KEGG: 00630+4.1.1.47 AMK58_06965 4c090789cd82caa5bfa85fae261ad602 589 Gene3D G3DSA:3.40.50.1220 192 358 4.6E-49 T 11-10-2018 AMK58_06965 4c090789cd82caa5bfa85fae261ad602 589 Gene3D G3DSA:3.40.50.970 2 171 7.4E-66 T 11-10-2018 AMK58_06965 4c090789cd82caa5bfa85fae261ad602 589 SUPERFAMILY SSF52518 3 186 2.02E-49 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMK58_06965 4c090789cd82caa5bfa85fae261ad602 589 SUPERFAMILY SSF52518 369 564 3.13E-52 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMK58_04530 ea8853f8c4d35e457dd1cfb808162fea 993 Gene3D G3DSA:1.20.120.160 881 990 1.7E-14 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMK58_04530 ea8853f8c4d35e457dd1cfb808162fea 993 Pfam PF01627 Hpt domain 903 975 6.4E-9 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMK58_04530 ea8853f8c4d35e457dd1cfb808162fea 993 SUPERFAMILY SSF52172 735 865 1.42E-37 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_04530 ea8853f8c4d35e457dd1cfb808162fea 993 Pfam PF11849 Domain of unknown function (DUF3369) 152 323 4.2E-40 T 11-10-2018 IPR021800 Domain of unknown function DUF3369 AMK58_04530 ea8853f8c4d35e457dd1cfb808162fea 993 Pfam PF00512 His Kinase A (phospho-acceptor) domain 362 426 1.4E-18 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_04530 ea8853f8c4d35e457dd1cfb808162fea 993 Gene3D G3DSA:3.30.565.10 425 591 4.8E-53 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_04530 ea8853f8c4d35e457dd1cfb808162fea 993 SUPERFAMILY SSF47384 348 427 3.34E-21 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_04530 ea8853f8c4d35e457dd1cfb808162fea 993 Gene3D G3DSA:3.40.50.2300 31 169 3.1E-14 T 11-10-2018 AMK58_04530 ea8853f8c4d35e457dd1cfb808162fea 993 SMART SM00073 894 991 2.0E-6 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMK58_04530 ea8853f8c4d35e457dd1cfb808162fea 993 SUPERFAMILY SSF52172 26 164 1.08E-13 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_04530 ea8853f8c4d35e457dd1cfb808162fea 993 SUPERFAMILY SSF55874 415 585 1.7E-47 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_04530 ea8853f8c4d35e457dd1cfb808162fea 993 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 473 586 1.5E-31 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_04530 ea8853f8c4d35e457dd1cfb808162fea 993 PRINTS PR00344 Bacterial sensor protein C-terminal signature 549 567 4.6E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_04530 ea8853f8c4d35e457dd1cfb808162fea 993 PRINTS PR00344 Bacterial sensor protein C-terminal signature 514 528 4.6E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_04530 ea8853f8c4d35e457dd1cfb808162fea 993 PRINTS PR00344 Bacterial sensor protein C-terminal signature 532 542 4.6E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_04530 ea8853f8c4d35e457dd1cfb808162fea 993 PRINTS PR00344 Bacterial sensor protein C-terminal signature 573 586 4.6E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_04530 ea8853f8c4d35e457dd1cfb808162fea 993 SMART SM00387 473 589 2.4E-37 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_04530 ea8853f8c4d35e457dd1cfb808162fea 993 SMART SM00448 30 152 0.011 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_04530 ea8853f8c4d35e457dd1cfb808162fea 993 SMART SM00448 737 853 3.0E-35 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_04530 ea8853f8c4d35e457dd1cfb808162fea 993 SMART SM00388 361 426 4.9E-24 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_04530 ea8853f8c4d35e457dd1cfb808162fea 993 Gene3D G3DSA:1.10.287.130 325 424 4.4E-29 T 11-10-2018 AMK58_04530 ea8853f8c4d35e457dd1cfb808162fea 993 Gene3D G3DSA:3.40.50.2300 732 857 2.0E-38 T 11-10-2018 AMK58_04530 ea8853f8c4d35e457dd1cfb808162fea 993 SUPERFAMILY SSF47226 875 989 4.45E-20 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMK58_04530 ea8853f8c4d35e457dd1cfb808162fea 993 Pfam PF00072 Response regulator receiver domain 739 852 2.4E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_04530 ea8853f8c4d35e457dd1cfb808162fea 993 Pfam PF00072 Response regulator receiver domain 32 142 1.2E-7 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_19280 b7b33c290dd2bd807b129be7d39c60eb 200 Pfam PF04955 HupE / UreJ protein 14 196 1.5E-58 T 11-10-2018 IPR007038 Hydrogenase/Urease accessory protein HupE/UreJ protein AMK58_19280 b7b33c290dd2bd807b129be7d39c60eb 200 PIRSF PIRSF016919 3 200 1.7E-60 T 11-10-2018 IPR007038 Hydrogenase/Urease accessory protein HupE/UreJ protein AMK58_24145 978c3137c89614626fe576ceef6b77be 381 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 302 314 7.7E-5 T 11-10-2018 AMK58_24145 978c3137c89614626fe576ceef6b77be 381 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 199 213 7.7E-5 T 11-10-2018 AMK58_24145 978c3137c89614626fe576ceef6b77be 381 SUPERFAMILY SSF53335 147 349 2.61E-36 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_24145 978c3137c89614626fe576ceef6b77be 381 Gene3D G3DSA:3.30.2130.30 18 255 6.6E-102 T 11-10-2018 AMK58_24145 978c3137c89614626fe576ceef6b77be 381 Gene3D G3DSA:3.40.50.150 175 357 6.6E-102 T 11-10-2018 AMK58_24145 978c3137c89614626fe576ceef6b77be 381 Pfam PF01170 Putative RNA methylase family UPF0020 168 352 1.8E-38 T 11-10-2018 IPR000241 Putative RNA methylase domain AMK58_24145 978c3137c89614626fe576ceef6b77be 381 ProSitePatterns PS01261 Uncharacterized protein family UPF0020 signature. 201 212 - T 11-10-2018 IPR000241 Putative RNA methylase domain AMK58_24145 978c3137c89614626fe576ceef6b77be 381 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 305 311 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMK58_22370 08e7692a559b4fe59d531840e6a235ef 274 Gene3D G3DSA:2.160.20.60 140 222 4.5E-8 T 11-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 AMK58_22370 08e7692a559b4fe59d531840e6a235ef 274 Pfam PF01493 GXGXG motif 142 207 1.9E-5 T 11-10-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0016491|GO:0055114 AMK58_22370 08e7692a559b4fe59d531840e6a235ef 274 SUPERFAMILY SSF69336 15 227 1.7E-31 T 11-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 AMK58_22370 08e7692a559b4fe59d531840e6a235ef 274 TIGRFAM TIGR03122 one_C_dehyd_C: formylmethanofuran dehydrogenase subunit C 4 270 1.1E-63 T 11-10-2018 IPR017550 Formylmethanofuran dehydrogenase subunit C GO:0015948|GO:0018493|GO:0046914|GO:0055114 KEGG: 00680+1.2.7.12|MetaCyc: PWY-5209|MetaCyc: PWY-7784 AMK58_15840 d125be6074b8b7cfdb2c02957365a550 371 PIRSF PIRSF035865 1 367 3.6E-82 T 11-10-2018 IPR014598 Uncharacterised conserved protein UCP035865 AMK58_15840 d125be6074b8b7cfdb2c02957365a550 371 Pfam PF10098 Uncharacterised protein conserved in bacteria (DUF2336) 90 349 1.7E-75 T 11-10-2018 IPR019285 Protein of unknown function DUF2336 AMK58_17770 985452d4c301f48862138b2df3a244e1 314 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 20 98 1.3E-25 T 11-10-2018 IPR013589 Bacterial transglutaminase-like, N-terminal AMK58_17770 985452d4c301f48862138b2df3a244e1 314 SMART SM00460 193 264 9.1E-17 T 11-10-2018 IPR002931 Transglutaminase-like AMK58_17770 985452d4c301f48862138b2df3a244e1 314 Pfam PF01841 Transglutaminase-like superfamily 160 260 3.7E-18 T 11-10-2018 IPR002931 Transglutaminase-like AMK58_17770 985452d4c301f48862138b2df3a244e1 314 Gene3D G3DSA:3.10.620.30 114 298 2.2E-44 T 11-10-2018 AMK58_17770 985452d4c301f48862138b2df3a244e1 314 SUPERFAMILY SSF54001 134 289 6.45E-38 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily AMK58_15830 a849c50ac978a27ea544793032189afa 712 SUPERFAMILY SSF52540 51 599 2.8E-36 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_15830 a849c50ac978a27ea544793032189afa 712 SMART SM00490 478 564 4.8E-19 T 11-10-2018 IPR001650 Helicase, C-terminal AMK58_15830 a849c50ac978a27ea544793032189afa 712 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 22 674 0.0 T 11-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 AMK58_15830 a849c50ac978a27ea544793032189afa 712 Pfam PF12344 Ultra-violet resistance protein B 570 611 4.9E-23 T 11-10-2018 IPR024759 UvrB, YAD/RRR-motif-containing domain AMK58_15830 a849c50ac978a27ea544793032189afa 712 SUPERFAMILY SSF46600 636 677 1.31E-10 T 11-10-2018 IPR036876 UVR domain superfamily AMK58_15830 a849c50ac978a27ea544793032189afa 712 Gene3D G3DSA:3.40.50.300 290 432 9.0E-48 T 11-10-2018 AMK58_15830 a849c50ac978a27ea544793032189afa 712 Gene3D G3DSA:3.40.50.300 15 254 1.8E-77 T 11-10-2018 AMK58_15830 a849c50ac978a27ea544793032189afa 712 Gene3D G3DSA:3.40.50.300 433 614 8.0E-50 T 11-10-2018 AMK58_15830 a849c50ac978a27ea544793032189afa 712 Pfam PF04851 Type III restriction enzyme, res subunit 29 157 2.3E-11 T 11-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 AMK58_15830 a849c50ac978a27ea544793032189afa 712 Gene3D G3DSA:4.10.860.10 630 679 2.0E-6 T 11-10-2018 AMK58_15830 a849c50ac978a27ea544793032189afa 712 Hamap MF_00204 UvrABC system protein B [uvrB]. 21 677 42.303 T 11-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 AMK58_15830 a849c50ac978a27ea544793032189afa 712 SMART SM00487 27 444 1.1E-27 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMK58_15830 a849c50ac978a27ea544793032189afa 712 Pfam PF00271 Helicase conserved C-terminal domain 459 562 1.2E-17 T 11-10-2018 IPR001650 Helicase, C-terminal AMK58_15830 a849c50ac978a27ea544793032189afa 712 SUPERFAMILY SSF52540 21 432 2.22E-133 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_15830 a849c50ac978a27ea544793032189afa 712 Pfam PF02151 UvrB/uvrC motif 643 676 1.6E-7 T 11-10-2018 IPR001943 UVR domain GO:0005515 AMK58_19540 dcccee2703083be46ceb0f108e93cb5e 243 Gene3D G3DSA:1.10.10.10 119 228 3.9E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_19540 dcccee2703083be46ceb0f108e93cb5e 243 SMART SM00862 145 221 7.3E-19 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_19540 dcccee2703083be46ceb0f108e93cb5e 243 Pfam PF00072 Response regulator receiver domain 3 113 5.3E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_19540 dcccee2703083be46ceb0f108e93cb5e 243 Gene3D G3DSA:3.40.50.2300 1 118 4.8E-37 T 11-10-2018 AMK58_19540 dcccee2703083be46ceb0f108e93cb5e 243 SMART SM00448 1 112 6.6E-40 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_19540 dcccee2703083be46ceb0f108e93cb5e 243 SUPERFAMILY SSF52172 1 173 3.27E-40 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_19540 dcccee2703083be46ceb0f108e93cb5e 243 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 221 5.7E-20 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_22940 61e52c6a0628fba7bac21e6df96a5764 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 16 75 5.9E-14 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_22940 61e52c6a0628fba7bac21e6df96a5764 307 Pfam PF03466 LysR substrate binding domain 100 302 9.4E-26 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_22940 61e52c6a0628fba7bac21e6df96a5764 307 Gene3D G3DSA:3.40.190.290 103 304 2.4E-16 T 11-10-2018 AMK58_22940 61e52c6a0628fba7bac21e6df96a5764 307 SUPERFAMILY SSF46785 15 99 4.9E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_22940 61e52c6a0628fba7bac21e6df96a5764 307 SUPERFAMILY SSF53850 101 302 2.71E-25 T 11-10-2018 AMK58_22940 61e52c6a0628fba7bac21e6df96a5764 307 Gene3D G3DSA:1.10.10.10 15 100 1.4E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_20420 baca15b4e036676236d245ac4f2a6799 767 Gene3D G3DSA:1.10.287.130 371 446 4.4E-25 T 11-10-2018 AMK58_20420 baca15b4e036676236d245ac4f2a6799 767 Pfam PF00672 HAMP domain 319 363 6.8E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_20420 baca15b4e036676236d245ac4f2a6799 767 Pfam PF02743 Cache domain 69 233 1.4E-14 T 11-10-2018 IPR033479 Double Cache domain 1 AMK58_20420 baca15b4e036676236d245ac4f2a6799 767 SUPERFAMILY SSF47384 366 447 7.06E-21 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_20420 baca15b4e036676236d245ac4f2a6799 767 SMART SM00387 493 605 4.5E-41 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_20420 baca15b4e036676236d245ac4f2a6799 767 SMART SM00448 628 742 6.3E-33 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_20420 baca15b4e036676236d245ac4f2a6799 767 SUPERFAMILY SSF52172 627 747 4.84E-35 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_20420 baca15b4e036676236d245ac4f2a6799 767 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 493 604 4.6E-32 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_20420 baca15b4e036676236d245ac4f2a6799 767 SUPERFAMILY SSF55874 435 607 9.95E-47 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_20420 baca15b4e036676236d245ac4f2a6799 767 Gene3D G3DSA:3.30.565.10 447 607 1.0E-50 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_20420 baca15b4e036676236d245ac4f2a6799 767 SUPERFAMILY SSF158472 316 363 2.48E-5 T 11-10-2018 AMK58_20420 baca15b4e036676236d245ac4f2a6799 767 SMART SM00304 313 366 1.5E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_20420 baca15b4e036676236d245ac4f2a6799 767 Gene3D G3DSA:3.40.50.12740 627 765 7.6E-39 T 11-10-2018 AMK58_20420 baca15b4e036676236d245ac4f2a6799 767 Pfam PF00512 His Kinase A (phospho-acceptor) domain 381 446 1.0E-18 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_20420 baca15b4e036676236d245ac4f2a6799 767 SMART SM00388 381 446 5.0E-25 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_20420 baca15b4e036676236d245ac4f2a6799 767 Gene3D G3DSA:3.30.450.20 197 276 1.2E-5 T 11-10-2018 AMK58_20420 baca15b4e036676236d245ac4f2a6799 767 Gene3D G3DSA:1.20.1480.50 280 370 9.8E-8 T 11-10-2018 AMK58_20420 baca15b4e036676236d245ac4f2a6799 767 Pfam PF00072 Response regulator receiver domain 630 742 2.1E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_20420 baca15b4e036676236d245ac4f2a6799 767 PRINTS PR00344 Bacterial sensor protein C-terminal signature 534 548 4.8E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_20420 baca15b4e036676236d245ac4f2a6799 767 PRINTS PR00344 Bacterial sensor protein C-terminal signature 589 602 4.8E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_20420 baca15b4e036676236d245ac4f2a6799 767 PRINTS PR00344 Bacterial sensor protein C-terminal signature 565 583 4.8E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_20420 baca15b4e036676236d245ac4f2a6799 767 PRINTS PR00344 Bacterial sensor protein C-terminal signature 552 562 4.8E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_20420 baca15b4e036676236d245ac4f2a6799 767 Gene3D G3DSA:3.30.450.20 42 188 2.7E-19 T 11-10-2018 AMK58_05665 72badf52c9ba837307c2fc898d5d5935 1125 Gene3D G3DSA:2.60.40.1180 1030 1125 4.9E-26 T 11-10-2018 IPR013780 Glycosyl hydrolase, all-beta AMK58_05665 72badf52c9ba837307c2fc898d5d5935 1125 Gene3D G3DSA:2.60.40.10 483 665 3.3E-46 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_05665 72badf52c9ba837307c2fc898d5d5935 1125 Gene3D G3DSA:1.20.58.280 570 645 3.3E-46 T 11-10-2018 AMK58_05665 72badf52c9ba837307c2fc898d5d5935 1125 SUPERFAMILY SSF51445 15 353 4.23E-58 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily AMK58_05665 72badf52c9ba837307c2fc898d5d5935 1125 SMART SM00642 13 347 1.2E-6 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMK58_05665 72badf52c9ba837307c2fc898d5d5935 1125 Pfam PF14701 Glycogen debranching enzyme, glucanotransferase domain 20 121 3.4E-11 T 11-10-2018 IPR032792 Glycogen debranching enzyme, glucanotransferase domain KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-6798695|Reactome: R-HSA-70221 AMK58_05665 72badf52c9ba837307c2fc898d5d5935 1125 Gene3D G3DSA:3.20.20.80 666 1029 1.1E-149 T 11-10-2018 AMK58_05665 72badf52c9ba837307c2fc898d5d5935 1125 Gene3D G3DSA:3.20.20.80 14 355 1.9E-68 T 11-10-2018 AMK58_05665 72badf52c9ba837307c2fc898d5d5935 1125 Hamap MF_02124 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase [glgE]. 480 1122 45.645 T 11-10-2018 IPR026585 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase GO:0016757 KEGG: 00500+2.4.99.16|MetaCyc: PWY-7900 AMK58_05665 72badf52c9ba837307c2fc898d5d5935 1125 SUPERFAMILY SSF51445 662 1025 4.49E-81 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily AMK58_05665 72badf52c9ba837307c2fc898d5d5935 1125 Pfam PF00128 Alpha amylase, catalytic domain 689 794 9.4E-5 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMK58_05665 72badf52c9ba837307c2fc898d5d5935 1125 Pfam PF11896 Domain of unknown function (DUF3416) 482 665 3.4E-52 T 11-10-2018 IPR021828 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase, domain N/S GO:0004553 KEGG: 00500+2.4.99.16|MetaCyc: PWY-7900 AMK58_18900 50b3340b285633465dac25fac0342752 760 Pfam PF02901 Pyruvate formate lyase-like 39 619 8.4E-198 T 11-10-2018 IPR004184 Pyruvate formate lyase domain GO:0003824 AMK58_18900 50b3340b285633465dac25fac0342752 760 TIGRFAM TIGR01255 pyr_form_ly_1: formate acetyltransferase 21 757 0.0 T 11-10-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 AMK58_18900 50b3340b285633465dac25fac0342752 760 Gene3D G3DSA:3.20.70.20 13 759 2.2E-289 T 11-10-2018 AMK58_18900 50b3340b285633465dac25fac0342752 760 SUPERFAMILY SSF51998 17 758 1.1E-276 T 11-10-2018 AMK58_18900 50b3340b285633465dac25fac0342752 760 ProSitePatterns PS00850 Glycine radical domain signature. 730 738 - T 11-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site AMK58_18900 50b3340b285633465dac25fac0342752 760 Pfam PF01228 Glycine radical 635 741 2.5E-43 T 11-10-2018 IPR001150 Glycine radical domain GO:0003824 AMK58_18900 50b3340b285633465dac25fac0342752 760 PIRSF PIRSF000379 17 760 0.0 T 11-10-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 AMK58_11005 2fd92b9bbd2ab0fd81b50c285442358b 631 Gene3D G3DSA:3.30.230.10 217 329 1.9E-33 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMK58_11005 2fd92b9bbd2ab0fd81b50c285442358b 631 Gene3D G3DSA:3.30.1370.100 488 583 8.0E-58 T 11-10-2018 AMK58_11005 2fd92b9bbd2ab0fd81b50c285442358b 631 Gene3D G3DSA:2.30.42.20 447 625 8.0E-58 T 11-10-2018 AMK58_11005 2fd92b9bbd2ab0fd81b50c285442358b 631 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 92 98 - T 11-10-2018 IPR014762 DNA mismatch repair, conserved site AMK58_11005 2fd92b9bbd2ab0fd81b50c285442358b 631 Gene3D G3DSA:3.30.565.10 1 207 9.6E-63 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_11005 2fd92b9bbd2ab0fd81b50c285442358b 631 SUPERFAMILY SSF54211 208 330 4.93E-34 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMK58_11005 2fd92b9bbd2ab0fd81b50c285442358b 631 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 214 329 6.6E-36 T 11-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 AMK58_11005 2fd92b9bbd2ab0fd81b50c285442358b 631 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 24 125 1.1E-10 T 11-10-2018 AMK58_11005 2fd92b9bbd2ab0fd81b50c285442358b 631 SUPERFAMILY SSF55874 1 199 1.44E-51 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_11005 2fd92b9bbd2ab0fd81b50c285442358b 631 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 1 310 1.1E-87 T 11-10-2018 IPR002099 DNA mismatch repair protein family, N-terminal GO:0005524|GO:0006298|GO:0030983 AMK58_11005 2fd92b9bbd2ab0fd81b50c285442358b 631 SMART SM01340 212 330 1.1E-55 T 11-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 AMK58_11005 2fd92b9bbd2ab0fd81b50c285442358b 631 SUPERFAMILY SSF118116 440 630 2.09E-60 T 11-10-2018 IPR037198 MutL, C-terminal domain superfamily AMK58_11005 2fd92b9bbd2ab0fd81b50c285442358b 631 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 1 628 27.94 T 11-10-2018 IPR020667 DNA mismatch repair protein, MutL GO:0006298 AMK58_11005 2fd92b9bbd2ab0fd81b50c285442358b 631 SMART SM00853 445 588 1.8E-53 T 11-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 AMK58_11005 2fd92b9bbd2ab0fd81b50c285442358b 631 Pfam PF08676 MutL C terminal dimerisation domain 441 588 5.8E-48 T 11-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 AMK58_14050 977936e31a8285cf29443ab8750f2bcf 435 Gene3D G3DSA:1.20.1600.10 1 409 5.6E-67 T 11-10-2018 AMK58_14050 977936e31a8285cf29443ab8750f2bcf 435 Pfam PF02321 Outer membrane efflux protein 211 395 1.6E-22 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 AMK58_14050 977936e31a8285cf29443ab8750f2bcf 435 Pfam PF02321 Outer membrane efflux protein 9 187 1.4E-22 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 AMK58_14050 977936e31a8285cf29443ab8750f2bcf 435 SUPERFAMILY SSF56954 3 402 1.57E-59 T 11-10-2018 AMK58_09915 e2c562c2d72189c3f48c2c2ec8de3d44 194 Pfam PF03641 Possible lysine decarboxylase 49 178 3.3E-44 T 11-10-2018 IPR031100 LOG family AMK58_09915 e2c562c2d72189c3f48c2c2ec8de3d44 194 Gene3D G3DSA:3.40.50.450 1 192 4.2E-74 T 11-10-2018 AMK58_09915 e2c562c2d72189c3f48c2c2ec8de3d44 194 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 6 179 1.7E-60 T 11-10-2018 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG AMK58_09915 e2c562c2d72189c3f48c2c2ec8de3d44 194 SUPERFAMILY SSF102405 4 179 6.87E-63 T 11-10-2018 AMK58_18505 64b5f661ff603a20b70f54198ef45085 516 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 6 194 1.9E-72 T 11-10-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 AMK58_18505 64b5f661ff603a20b70f54198ef45085 516 Gene3D G3DSA:3.40.50.620 201 396 1.0E-75 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_18505 64b5f661ff603a20b70f54198ef45085 516 PRINTS PR00097 Anthranilate synthase component II signature 77 88 1.7E-5 T 11-10-2018 AMK58_18505 64b5f661ff603a20b70f54198ef45085 516 PRINTS PR00097 Anthranilate synthase component II signature 168 181 1.7E-5 T 11-10-2018 AMK58_18505 64b5f661ff603a20b70f54198ef45085 516 Pfam PF00958 GMP synthase C terminal domain 424 515 3.1E-46 T 11-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 AMK58_18505 64b5f661ff603a20b70f54198ef45085 516 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 204 516 2.1E-149 T 11-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 AMK58_18505 64b5f661ff603a20b70f54198ef45085 516 PRINTS PR00096 Glutamine amidotransferase superfamily signature 168 181 9.0E-8 T 11-10-2018 AMK58_18505 64b5f661ff603a20b70f54198ef45085 516 PRINTS PR00096 Glutamine amidotransferase superfamily signature 50 59 9.0E-8 T 11-10-2018 AMK58_18505 64b5f661ff603a20b70f54198ef45085 516 PRINTS PR00096 Glutamine amidotransferase superfamily signature 77 88 9.0E-8 T 11-10-2018 AMK58_18505 64b5f661ff603a20b70f54198ef45085 516 Gene3D G3DSA:3.40.50.880 3 200 4.5E-52 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_18505 64b5f661ff603a20b70f54198ef45085 516 SUPERFAMILY SSF54810 396 516 3.27E-54 T 11-10-2018 AMK58_18505 64b5f661ff603a20b70f54198ef45085 516 Pfam PF02540 NAD synthase 208 245 2.1E-6 T 11-10-2018 IPR022310 NAD/GMP synthase AMK58_18505 64b5f661ff603a20b70f54198ef45085 516 SUPERFAMILY SSF52317 4 228 3.33E-56 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_18505 64b5f661ff603a20b70f54198ef45085 516 Pfam PF00117 Glutamine amidotransferase class-I 8 190 1.0E-36 T 11-10-2018 IPR017926 Glutamine amidotransferase AMK58_18505 64b5f661ff603a20b70f54198ef45085 516 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 3 516 55.147 T 11-10-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 AMK58_18505 64b5f661ff603a20b70f54198ef45085 516 SUPERFAMILY SSF52402 188 409 1.08E-57 T 11-10-2018 AMK58_18505 64b5f661ff603a20b70f54198ef45085 516 Gene3D G3DSA:3.30.300.10 397 516 1.7E-54 T 11-10-2018 AMK58_10280 b41bcc8bc2da7472cc0879beeb3adcac 215 Pfam PF05191 Adenylate kinase, active site lid 127 163 9.8E-13 T 11-10-2018 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 AMK58_10280 b41bcc8bc2da7472cc0879beeb3adcac 215 Gene3D G3DSA:3.40.50.300 1 215 8.7E-78 T 11-10-2018 AMK58_10280 b41bcc8bc2da7472cc0879beeb3adcac 215 TIGRFAM TIGR01351 adk: adenylate kinase 2 213 1.2E-79 T 11-10-2018 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 AMK58_10280 b41bcc8bc2da7472cc0879beeb3adcac 215 Pfam PF00406 Adenylate kinase 5 191 2.0E-56 T 11-10-2018 AMK58_10280 b41bcc8bc2da7472cc0879beeb3adcac 215 Hamap MF_00235 Adenylate kinase [adk]. 1 214 49.668 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AMK58_10280 b41bcc8bc2da7472cc0879beeb3adcac 215 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 11-10-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AMK58_10280 b41bcc8bc2da7472cc0879beeb3adcac 215 PRINTS PR00094 Adenylate kinase signature 161 176 9.8E-36 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AMK58_10280 b41bcc8bc2da7472cc0879beeb3adcac 215 PRINTS PR00094 Adenylate kinase signature 178 192 9.8E-36 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AMK58_10280 b41bcc8bc2da7472cc0879beeb3adcac 215 PRINTS PR00094 Adenylate kinase signature 4 17 9.8E-36 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AMK58_10280 b41bcc8bc2da7472cc0879beeb3adcac 215 PRINTS PR00094 Adenylate kinase signature 81 97 9.8E-36 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AMK58_10280 b41bcc8bc2da7472cc0879beeb3adcac 215 PRINTS PR00094 Adenylate kinase signature 32 46 9.8E-36 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AMK58_10280 b41bcc8bc2da7472cc0879beeb3adcac 215 SUPERFAMILY SSF52540 1 213 1.85E-41 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_06085 46ca694e240d3e6508edc2f52e22ce94 422 Pfam PF07724 AAA domain (Cdc48 subfamily) 111 307 1.5E-50 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMK58_06085 46ca694e240d3e6508edc2f52e22ce94 422 SMART SM00382 110 264 3.3E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_06085 46ca694e240d3e6508edc2f52e22ce94 422 SMART SM00994 12 51 1.7E-24 T 11-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 AMK58_06085 46ca694e240d3e6508edc2f52e22ce94 422 SUPERFAMILY SSF57716 13 48 1.18E-11 T 11-10-2018 AMK58_06085 46ca694e240d3e6508edc2f52e22ce94 422 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 10 407 3.4E-199 T 11-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 AMK58_06085 46ca694e240d3e6508edc2f52e22ce94 422 Gene3D G3DSA:3.30.50.30 2 51 3.5E-24 T 11-10-2018 IPR038366 Zinc finger, ClpX C4-type superfamily AMK58_06085 46ca694e240d3e6508edc2f52e22ce94 422 Pfam PF06689 ClpX C4-type zinc finger 13 50 6.0E-20 T 11-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 AMK58_06085 46ca694e240d3e6508edc2f52e22ce94 422 Gene3D G3DSA:1.10.8.60 313 421 1.6E-39 T 11-10-2018 AMK58_06085 46ca694e240d3e6508edc2f52e22ce94 422 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 314 385 1.1E-16 T 11-10-2018 IPR019489 Clp ATPase, C-terminal AMK58_06085 46ca694e240d3e6508edc2f52e22ce94 422 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 2 412 53.377 T 11-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 AMK58_06085 46ca694e240d3e6508edc2f52e22ce94 422 Gene3D G3DSA:3.40.50.300 57 312 3.7E-108 T 11-10-2018 AMK58_06085 46ca694e240d3e6508edc2f52e22ce94 422 SMART SM01086 314 409 2.7E-34 T 11-10-2018 IPR019489 Clp ATPase, C-terminal AMK58_06085 46ca694e240d3e6508edc2f52e22ce94 422 SUPERFAMILY SSF52540 63 389 9.15E-74 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_18265 082dc6fbee4f268c7640a1341b504b1e 1201 Pfam PF13432 Tetratricopeptide repeat 192 254 2.9E-9 T 11-10-2018 AMK58_18265 082dc6fbee4f268c7640a1341b504b1e 1201 Pfam PF13432 Tetratricopeptide repeat 675 737 1.6E-6 T 11-10-2018 AMK58_18265 082dc6fbee4f268c7640a1341b504b1e 1201 Pfam PF13432 Tetratricopeptide repeat 123 183 5.6E-6 T 11-10-2018 AMK58_18265 082dc6fbee4f268c7640a1341b504b1e 1201 Pfam PF13432 Tetratricopeptide repeat 28 80 8.7E-8 T 11-10-2018 AMK58_18265 082dc6fbee4f268c7640a1341b504b1e 1201 Gene3D G3DSA:1.25.40.10 660 913 9.8E-50 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_18265 082dc6fbee4f268c7640a1341b504b1e 1201 Gene3D G3DSA:1.25.40.10 194 350 7.8E-40 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_18265 082dc6fbee4f268c7640a1341b504b1e 1201 Pfam PF13181 Tetratricopeptide repeat 257 285 0.0032 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18265 082dc6fbee4f268c7640a1341b504b1e 1201 SUPERFAMILY SSF48452 137 347 3.63E-42 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_18265 082dc6fbee4f268c7640a1341b504b1e 1201 SUPERFAMILY SSF48452 669 883 1.9E-34 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_18265 082dc6fbee4f268c7640a1341b504b1e 1201 SUPERFAMILY SSF48452 12 160 2.95E-21 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_18265 082dc6fbee4f268c7640a1341b504b1e 1201 Gene3D G3DSA:1.25.40.10 161 193 3.1E-6 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_18265 082dc6fbee4f268c7640a1341b504b1e 1201 Pfam PF00515 Tetratricopeptide repeat 740 772 4.7E-7 T 11-10-2018 IPR001440 Tetratricopeptide repeat 1 GO:0005515 AMK58_18265 082dc6fbee4f268c7640a1341b504b1e 1201 Pfam PF00515 Tetratricopeptide repeat 808 839 4.3E-7 T 11-10-2018 IPR001440 Tetratricopeptide repeat 1 GO:0005515 AMK58_18265 082dc6fbee4f268c7640a1341b504b1e 1201 Pfam PF00515 Tetratricopeptide repeat 289 320 1.2E-8 T 11-10-2018 IPR001440 Tetratricopeptide repeat 1 GO:0005515 AMK58_18265 082dc6fbee4f268c7640a1341b504b1e 1201 SUPERFAMILY SSF53756 373 638 6.43E-10 T 11-10-2018 AMK58_18265 082dc6fbee4f268c7640a1341b504b1e 1201 Gene3D G3DSA:1.25.40.10 6 160 1.6E-26 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_18265 082dc6fbee4f268c7640a1341b504b1e 1201 SMART SM00028 16 49 0.028 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18265 082dc6fbee4f268c7640a1341b504b1e 1201 SMART SM00028 671 704 0.012 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18265 082dc6fbee4f268c7640a1341b504b1e 1201 SMART SM00028 152 185 7.5E-4 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18265 082dc6fbee4f268c7640a1341b504b1e 1201 SMART SM00028 773 806 410.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18265 082dc6fbee4f268c7640a1341b504b1e 1201 SMART SM00028 118 151 14.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18265 082dc6fbee4f268c7640a1341b504b1e 1201 SMART SM00028 739 772 9.0E-6 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18265 082dc6fbee4f268c7640a1341b504b1e 1201 SMART SM00028 254 287 0.0011 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18265 082dc6fbee4f268c7640a1341b504b1e 1201 SMART SM00028 84 117 11.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18265 082dc6fbee4f268c7640a1341b504b1e 1201 SMART SM00028 220 253 2.6E-5 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18265 082dc6fbee4f268c7640a1341b504b1e 1201 SMART SM00028 186 219 0.14 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18265 082dc6fbee4f268c7640a1341b504b1e 1201 SMART SM00028 288 321 7.7E-8 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18265 082dc6fbee4f268c7640a1341b504b1e 1201 SMART SM00028 807 840 5.1E-6 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18265 082dc6fbee4f268c7640a1341b504b1e 1201 SMART SM00028 50 83 32.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18265 082dc6fbee4f268c7640a1341b504b1e 1201 SMART SM00028 841 874 11.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18265 082dc6fbee4f268c7640a1341b504b1e 1201 SMART SM00028 705 738 0.49 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18265 082dc6fbee4f268c7640a1341b504b1e 1201 SUPERFAMILY SSF53756 926 1186 8.16E-11 T 11-10-2018 AMK58_06025 93fc486534fb96d1b83af08cf451cc76 264 Gene3D G3DSA:3.10.310.10 118 252 7.7E-94 T 11-10-2018 AMK58_06025 93fc486534fb96d1b83af08cf451cc76 264 SUPERFAMILY SSF54506 2 264 4.36E-82 T 11-10-2018 AMK58_06025 93fc486534fb96d1b83af08cf451cc76 264 PIRSF PIRSF016184 1 264 3.5E-55 T 11-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 AMK58_06025 93fc486534fb96d1b83af08cf451cc76 264 Gene3D G3DSA:3.10.310.10 6 260 7.7E-94 T 11-10-2018 AMK58_06025 93fc486534fb96d1b83af08cf451cc76 264 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 2 261 1.2E-38 T 11-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 AMK58_06025 93fc486534fb96d1b83af08cf451cc76 264 Pfam PF02567 Phenazine biosynthesis-like protein 8 260 1.5E-53 T 11-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 AMK58_02370 a405faaaae914b7654359420026e69b8 101 Pfam PF13466 STAS domain 14 93 2.6E-15 T 11-10-2018 IPR002645 STAS domain AMK58_02370 a405faaaae914b7654359420026e69b8 101 SUPERFAMILY SSF52091 1 99 1.67E-21 T 11-10-2018 IPR036513 STAS domain superfamily AMK58_02370 a405faaaae914b7654359420026e69b8 101 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 4 101 6.6E-18 T 11-10-2018 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 AMK58_02370 a405faaaae914b7654359420026e69b8 101 Gene3D G3DSA:3.30.750.24 1 101 2.0E-21 T 11-10-2018 IPR036513 STAS domain superfamily AMK58_25865 64211d6cdf937102ed131115f481379e 534 SUPERFAMILY SSF55781 36 189 5.56E-25 T 11-10-2018 AMK58_25865 64211d6cdf937102ed131115f481379e 534 SMART SM00086 267 309 0.0015 T 11-10-2018 IPR001610 PAC motif AMK58_25865 64211d6cdf937102ed131115f481379e 534 SUPERFAMILY SSF55785 177 306 9.6E-18 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_25865 64211d6cdf937102ed131115f481379e 534 Gene3D G3DSA:3.30.450.20 190 306 4.9E-15 T 11-10-2018 AMK58_25865 64211d6cdf937102ed131115f481379e 534 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 438 533 3.1E-11 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_25865 64211d6cdf937102ed131115f481379e 534 SMART SM00387 430 534 2.2E-15 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_25865 64211d6cdf937102ed131115f481379e 534 Pfam PF08448 PAS fold 196 310 2.6E-8 T 11-10-2018 IPR013656 PAS fold-4 AMK58_25865 64211d6cdf937102ed131115f481379e 534 Gene3D G3DSA:3.30.565.10 391 534 2.0E-26 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_25865 64211d6cdf937102ed131115f481379e 534 SUPERFAMILY SSF55874 411 533 5.76E-20 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_25865 64211d6cdf937102ed131115f481379e 534 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 257 314 4.0E-8 T 11-10-2018 IPR000014 PAS domain AMK58_25865 64211d6cdf937102ed131115f481379e 534 Pfam PF13185 GAF domain 36 177 1.5E-15 T 11-10-2018 IPR003018 GAF domain GO:0005515 AMK58_25865 64211d6cdf937102ed131115f481379e 534 PRINTS PR00344 Bacterial sensor protein C-terminal signature 520 533 8.4E-8 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_25865 64211d6cdf937102ed131115f481379e 534 PRINTS PR00344 Bacterial sensor protein C-terminal signature 470 484 8.4E-8 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_25865 64211d6cdf937102ed131115f481379e 534 PRINTS PR00344 Bacterial sensor protein C-terminal signature 493 511 8.4E-8 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_25865 64211d6cdf937102ed131115f481379e 534 Gene3D G3DSA:3.30.450.40 35 189 5.6E-29 T 11-10-2018 IPR029016 GAF-like domain superfamily AMK58_25865 64211d6cdf937102ed131115f481379e 534 SMART SM00065 35 186 3.6E-7 T 11-10-2018 IPR003018 GAF domain GO:0005515 AMK58_25865 64211d6cdf937102ed131115f481379e 534 Pfam PF07568 Histidine kinase 332 406 1.1E-15 T 11-10-2018 IPR011495 Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain AMK58_21290 e6ca9c56dbe76fd9f3e6a322f83a5b68 347 TIGRFAM TIGR01305 GMP_reduct_1: guanosine monophosphate reductase 3 345 5.8E-150 T 11-10-2018 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 AMK58_21290 e6ca9c56dbe76fd9f3e6a322f83a5b68 347 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 9 338 4.0E-68 T 11-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 AMK58_21290 e6ca9c56dbe76fd9f3e6a322f83a5b68 347 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 172 184 - T 11-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 AMK58_21290 e6ca9c56dbe76fd9f3e6a322f83a5b68 347 Hamap MF_00596 GMP reductase [guaC]. 1 346 46.094 T 11-10-2018 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 AMK58_21290 e6ca9c56dbe76fd9f3e6a322f83a5b68 347 PIRSF PIRSF000235 1 347 8.9E-165 T 11-10-2018 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 AMK58_21290 e6ca9c56dbe76fd9f3e6a322f83a5b68 347 Gene3D G3DSA:3.20.20.70 1 346 5.4E-102 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_21290 e6ca9c56dbe76fd9f3e6a322f83a5b68 347 SMART SM01240 7 345 2.0E-97 T 11-10-2018 AMK58_21290 e6ca9c56dbe76fd9f3e6a322f83a5b68 347 SUPERFAMILY SSF51412 6 336 3.53E-88 T 11-10-2018 AMK58_23140 e5845c7013f7d06319787e8867f5ca51 360 Gene3D G3DSA:2.40.50.100 50 192 2.6E-56 T 11-10-2018 AMK58_23140 e5845c7013f7d06319787e8867f5ca51 360 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 26 355 6.6E-66 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMK58_23140 e5845c7013f7d06319787e8867f5ca51 360 Gene3D G3DSA:2.40.30.170 37 280 2.6E-56 T 11-10-2018 AMK58_23140 e5845c7013f7d06319787e8867f5ca51 360 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 39 266 1.4E-27 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMK58_23140 e5845c7013f7d06319787e8867f5ca51 360 Gene3D G3DSA:1.10.287.470 85 158 2.6E-56 T 11-10-2018 AMK58_23140 e5845c7013f7d06319787e8867f5ca51 360 Gene3D G3DSA:2.40.420.20 281 354 2.6E-56 T 11-10-2018 AMK58_23140 e5845c7013f7d06319787e8867f5ca51 360 SUPERFAMILY SSF111369 39 272 6.67E-26 T 11-10-2018 AMK58_18205 d2c6c37b94d184aa1da03239a9c87b3d 159 Gene3D G3DSA:1.10.10.10 5 153 2.5E-35 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_18205 d2c6c37b94d184aa1da03239a9c87b3d 159 SUPERFAMILY SSF46785 15 151 5.92E-30 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_18205 d2c6c37b94d184aa1da03239a9c87b3d 159 SMART SM00347 37 138 1.8E-15 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_18205 d2c6c37b94d184aa1da03239a9c87b3d 159 Pfam PF01047 MarR family 45 101 1.6E-11 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_18205 d2c6c37b94d184aa1da03239a9c87b3d 159 PRINTS PR00598 Bacterial regulatory protein MarR family signature 79 94 6.3E-10 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_18205 d2c6c37b94d184aa1da03239a9c87b3d 159 PRINTS PR00598 Bacterial regulatory protein MarR family signature 128 148 6.3E-10 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_18205 d2c6c37b94d184aa1da03239a9c87b3d 159 PRINTS PR00598 Bacterial regulatory protein MarR family signature 62 78 6.3E-10 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_18205 d2c6c37b94d184aa1da03239a9c87b3d 159 PRINTS PR00598 Bacterial regulatory protein MarR family signature 98 114 6.3E-10 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_18860 7641f92c6abf8d3f9f9df0d9df60a5f4 871 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 318 330 - T 11-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 AMK58_18860 7641f92c6abf8d3f9f9df0d9df60a5f4 871 Gene3D G3DSA:1.10.8.60 771 865 8.8E-11 T 11-10-2018 AMK58_18860 7641f92c6abf8d3f9f9df0d9df60a5f4 871 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 644 662 1.1E-31 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 AMK58_18860 7641f92c6abf8d3f9f9df0d9df60a5f4 871 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 706 720 1.1E-31 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 AMK58_18860 7641f92c6abf8d3f9f9df0d9df60a5f4 871 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 673 691 1.1E-31 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 AMK58_18860 7641f92c6abf8d3f9f9df0d9df60a5f4 871 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 599 617 1.1E-31 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 AMK58_18860 7641f92c6abf8d3f9f9df0d9df60a5f4 871 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 771 844 3.2E-12 T 11-10-2018 IPR019489 Clp ATPase, C-terminal AMK58_18860 7641f92c6abf8d3f9f9df0d9df60a5f4 871 Gene3D G3DSA:1.10.1780.10 1 158 1.7E-29 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 AMK58_18860 7641f92c6abf8d3f9f9df0d9df60a5f4 871 SUPERFAMILY SSF52540 544 830 1.28E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_18860 7641f92c6abf8d3f9f9df0d9df60a5f4 871 SMART SM01086 771 864 3.3E-9 T 11-10-2018 IPR019489 Clp ATPase, C-terminal AMK58_18860 7641f92c6abf8d3f9f9df0d9df60a5f4 871 Gene3D G3DSA:3.40.50.300 182 371 3.1E-62 T 11-10-2018 AMK58_18860 7641f92c6abf8d3f9f9df0d9df60a5f4 871 Pfam PF07724 AAA domain (Cdc48 subfamily) 594 765 1.3E-38 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMK58_18860 7641f92c6abf8d3f9f9df0d9df60a5f4 871 SUPERFAMILY SSF52540 184 502 3.24E-71 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_18860 7641f92c6abf8d3f9f9df0d9df60a5f4 871 TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family 12 855 0.0 T 11-10-2018 IPR017729 Type VI secretion system, ATPase ClpV1 AMK58_18860 7641f92c6abf8d3f9f9df0d9df60a5f4 871 SUPERFAMILY SSF81923 16 126 1.18E-12 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 AMK58_18860 7641f92c6abf8d3f9f9df0d9df60a5f4 871 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 227 339 2.2E-8 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMK58_18860 7641f92c6abf8d3f9f9df0d9df60a5f4 871 Gene3D G3DSA:3.40.50.300 372 542 2.7E-41 T 11-10-2018 AMK58_18860 7641f92c6abf8d3f9f9df0d9df60a5f4 871 Gene3D G3DSA:3.40.50.300 548 769 5.0E-66 T 11-10-2018 AMK58_18860 7641f92c6abf8d3f9f9df0d9df60a5f4 871 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 26 74 3.0E-6 T 11-10-2018 IPR004176 Clp, N-terminal AMK58_18860 7641f92c6abf8d3f9f9df0d9df60a5f4 871 SMART SM00382 222 367 1.9E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_18860 7641f92c6abf8d3f9f9df0d9df60a5f4 871 SMART SM00382 595 737 1.7E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_21090 53d68432b6b9dafb1d697c6a1684d40a 208 Gene3D G3DSA:3.30.420.10 15 191 4.9E-45 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMK58_21090 53d68432b6b9dafb1d697c6a1684d40a 208 Pfam PF01612 3'-5' exonuclease 18 173 4.3E-37 T 11-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AMK58_21090 53d68432b6b9dafb1d697c6a1684d40a 208 SMART SM00474 1 174 5.1E-40 T 11-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AMK58_21090 53d68432b6b9dafb1d697c6a1684d40a 208 SUPERFAMILY SSF53098 18 195 5.06E-53 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMK58_19300 7a5df30427de47075e23b44b113e34de 113 Gene3D G3DSA:3.30.2320.80 1 113 1.3E-29 T 11-10-2018 AMK58_19300 7a5df30427de47075e23b44b113e34de 113 PIRSF PIRSF004761 1 113 4.3E-34 T 11-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 AMK58_19300 7a5df30427de47075e23b44b113e34de 113 TIGRFAM TIGR00100 hypA: hydrogenase nickel insertion protein HypA 1 113 1.1E-28 T 11-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 AMK58_19300 7a5df30427de47075e23b44b113e34de 113 Hamap MF_00213 Hydrogenase maturation factor HypA [hypA]. 1 113 22.301 T 11-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 AMK58_19300 7a5df30427de47075e23b44b113e34de 113 Pfam PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 1 112 1.1E-31 T 11-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 AMK58_09520 248429f6219b6829545bb77ce744c9ee 286 Gene3D G3DSA:1.10.287.90 28 123 7.0E-36 T 11-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_09520 248429f6219b6829545bb77ce744c9ee 286 TIGRFAM TIGR02866 CoxB: cytochrome c oxidase, subunit II 40 256 4.4E-61 T 11-10-2018 IPR014222 Cytochrome c oxidase, subunit II GO:0016021|GO:0016491 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_09520 248429f6219b6829545bb77ce744c9ee 286 SUPERFAMILY SSF49503 123 260 3.02E-59 T 11-10-2018 IPR008972 Cupredoxin AMK58_09520 248429f6219b6829545bb77ce744c9ee 286 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 191 239 - T 11-10-2018 IPR001505 Copper centre Cu(A) GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_09520 248429f6219b6829545bb77ce744c9ee 286 Gene3D G3DSA:2.60.40.420 124 259 2.0E-62 T 11-10-2018 IPR008972 Cupredoxin AMK58_09520 248429f6219b6829545bb77ce744c9ee 286 Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain 29 115 3.4E-24 T 11-10-2018 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_09520 248429f6219b6829545bb77ce744c9ee 286 PRINTS PR01166 Cytochrome c oxidase subunit II signature 210 227 5.0E-57 T 11-10-2018 AMK58_09520 248429f6219b6829545bb77ce744c9ee 286 PRINTS PR01166 Cytochrome c oxidase subunit II signature 123 142 5.0E-57 T 11-10-2018 AMK58_09520 248429f6219b6829545bb77ce744c9ee 286 PRINTS PR01166 Cytochrome c oxidase subunit II signature 166 187 5.0E-57 T 11-10-2018 AMK58_09520 248429f6219b6829545bb77ce744c9ee 286 PRINTS PR01166 Cytochrome c oxidase subunit II signature 89 101 5.0E-57 T 11-10-2018 AMK58_09520 248429f6219b6829545bb77ce744c9ee 286 PRINTS PR01166 Cytochrome c oxidase subunit II signature 190 210 5.0E-57 T 11-10-2018 AMK58_09520 248429f6219b6829545bb77ce744c9ee 286 PRINTS PR01166 Cytochrome c oxidase subunit II signature 228 245 5.0E-57 T 11-10-2018 AMK58_09520 248429f6219b6829545bb77ce744c9ee 286 PRINTS PR01166 Cytochrome c oxidase subunit II signature 101 121 5.0E-57 T 11-10-2018 AMK58_09520 248429f6219b6829545bb77ce744c9ee 286 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 127 246 6.3E-59 T 11-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_09520 248429f6219b6829545bb77ce744c9ee 286 SUPERFAMILY SSF81464 27 121 3.43E-30 T 11-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_13285 87f21bd7a7ba1fab61b5f6474204550b 183 SUPERFAMILY SSF47240 15 169 4.2E-41 T 11-10-2018 IPR009078 Ferritin-like superfamily AMK58_13285 87f21bd7a7ba1fab61b5f6474204550b 183 Gene3D G3DSA:1.20.1260.10 13 183 1.1E-64 T 11-10-2018 IPR012347 Ferritin-like AMK58_13285 87f21bd7a7ba1fab61b5f6474204550b 183 Pfam PF05974 Domain of unknown function (DUF892) 17 170 1.1E-42 T 11-10-2018 IPR010287 Domain of unknown function DUF892 AMK58_28175 bee5667a0012fd69ced223ea23e46c1e 317 TIGRFAM TIGR00746 arcC: carbamate kinase 1 306 6.6E-113 T 11-10-2018 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 AMK58_28175 bee5667a0012fd69ced223ea23e46c1e 317 PIRSF PIRSF000723 1 308 3.3E-98 T 11-10-2018 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 AMK58_28175 bee5667a0012fd69ced223ea23e46c1e 317 Pfam PF00696 Amino acid kinase family 1 285 1.3E-21 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 AMK58_28175 bee5667a0012fd69ced223ea23e46c1e 317 SUPERFAMILY SSF53633 1 306 6.28E-71 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMK58_28175 bee5667a0012fd69ced223ea23e46c1e 317 PRINTS PR01469 Bacterial carbamate kinase signature 71 89 1.0E-58 T 11-10-2018 AMK58_28175 bee5667a0012fd69ced223ea23e46c1e 317 PRINTS PR01469 Bacterial carbamate kinase signature 103 122 1.0E-58 T 11-10-2018 AMK58_28175 bee5667a0012fd69ced223ea23e46c1e 317 PRINTS PR01469 Bacterial carbamate kinase signature 174 192 1.0E-58 T 11-10-2018 AMK58_28175 bee5667a0012fd69ced223ea23e46c1e 317 PRINTS PR01469 Bacterial carbamate kinase signature 41 60 1.0E-58 T 11-10-2018 AMK58_28175 bee5667a0012fd69ced223ea23e46c1e 317 PRINTS PR01469 Bacterial carbamate kinase signature 263 278 1.0E-58 T 11-10-2018 AMK58_28175 bee5667a0012fd69ced223ea23e46c1e 317 PRINTS PR01469 Bacterial carbamate kinase signature 151 170 1.0E-58 T 11-10-2018 AMK58_28175 bee5667a0012fd69ced223ea23e46c1e 317 Gene3D G3DSA:3.40.1160.10 1 308 5.2E-104 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMK58_04940 b6ab85b806d791a840e3be5f278a6499 445 Gene3D G3DSA:1.10.287.470 224 296 4.2E-17 T 11-10-2018 AMK58_04940 b6ab85b806d791a840e3be5f278a6499 445 SUPERFAMILY SSF111369 257 326 2.48E-5 T 11-10-2018 AMK58_04940 b6ab85b806d791a840e3be5f278a6499 445 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 28 444 3.1E-112 T 11-10-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 AMK58_04940 b6ab85b806d791a840e3be5f278a6499 445 Gene3D G3DSA:2.40.50.100 297 333 4.2E-17 T 11-10-2018 AMK58_04940 b6ab85b806d791a840e3be5f278a6499 445 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 366 389 1.6E-51 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMK58_04940 b6ab85b806d791a840e3be5f278a6499 445 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 424 444 1.6E-51 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMK58_04940 b6ab85b806d791a840e3be5f278a6499 445 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 342 366 1.6E-51 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMK58_04940 b6ab85b806d791a840e3be5f278a6499 445 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 36 59 1.6E-51 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMK58_04940 b6ab85b806d791a840e3be5f278a6499 445 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 78 98 1.6E-51 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMK58_04940 b6ab85b806d791a840e3be5f278a6499 445 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 309 330 1.6E-51 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMK58_04940 b6ab85b806d791a840e3be5f278a6499 445 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 409 424 1.6E-51 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMK58_04940 b6ab85b806d791a840e3be5f278a6499 445 Gene3D G3DSA:2.40.50.100 73 136 1.3E-6 T 11-10-2018 AMK58_04940 b6ab85b806d791a840e3be5f278a6499 445 Pfam PF13533 Biotin-lipoyl like 76 108 7.7E-6 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain AMK58_04940 b6ab85b806d791a840e3be5f278a6499 445 Gene3D G3DSA:2.40.30.170 334 421 4.2E-17 T 11-10-2018 AMK58_04940 b6ab85b806d791a840e3be5f278a6499 445 Pfam PF13437 HlyD family secretion protein 297 395 8.4E-13 T 11-10-2018 AMK58_23230 c98973cd828719ff23d5d23eb97b7180 390 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 130 225 2.8E-26 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMK58_23230 c98973cd828719ff23d5d23eb97b7180 390 Gene3D G3DSA:2.40.110.10 129 242 1.5E-45 T 11-10-2018 AMK58_23230 c98973cd828719ff23d5d23eb97b7180 390 SUPERFAMILY SSF47203 236 388 2.9E-47 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMK58_23230 c98973cd828719ff23d5d23eb97b7180 390 PIRSF PIRSF016578 14 390 1.4E-16 T 11-10-2018 AMK58_23230 c98973cd828719ff23d5d23eb97b7180 390 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 344 363 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMK58_23230 c98973cd828719ff23d5d23eb97b7180 390 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 237 385 1.3E-43 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMK58_23230 c98973cd828719ff23d5d23eb97b7180 390 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 15 126 2.4E-40 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMK58_23230 c98973cd828719ff23d5d23eb97b7180 390 Gene3D G3DSA:1.20.140.10 243 390 3.5E-47 T 11-10-2018 AMK58_23230 c98973cd828719ff23d5d23eb97b7180 390 Gene3D G3DSA:1.10.540.10 3 128 6.8E-51 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMK58_23230 c98973cd828719ff23d5d23eb97b7180 390 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 132 144 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMK58_23230 c98973cd828719ff23d5d23eb97b7180 390 SUPERFAMILY SSF56645 6 250 1.96E-89 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMK58_03200 2144860dc9552ab3121d19ba4d6fb6bf 259 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_03200 2144860dc9552ab3121d19ba4d6fb6bf 259 Pfam PF00005 ABC transporter 19 179 2.0E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_03200 2144860dc9552ab3121d19ba4d6fb6bf 259 SMART SM00382 28 228 1.9E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_03200 2144860dc9552ab3121d19ba4d6fb6bf 259 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 229 251 4.7E-7 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AMK58_03200 2144860dc9552ab3121d19ba4d6fb6bf 259 SUPERFAMILY SSF52540 4 251 7.78E-64 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_03200 2144860dc9552ab3121d19ba4d6fb6bf 259 Gene3D G3DSA:3.40.50.300 1 253 6.1E-64 T 11-10-2018 AMK58_02795 1c62151a37e1b9724471b57ccfb55aa0 216 ProSitePatterns PS00083 Intradiol ring-cleavage dioxygenases signature. 75 103 - T 11-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 AMK58_02795 1c62151a37e1b9724471b57ccfb55aa0 216 Gene3D G3DSA:2.60.130.10 5 216 1.1E-57 T 11-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AMK58_02795 1c62151a37e1b9724471b57ccfb55aa0 216 Pfam PF00775 Dioxygenase 42 215 1.1E-28 T 11-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 AMK58_02795 1c62151a37e1b9724471b57ccfb55aa0 216 SUPERFAMILY SSF49482 15 215 1.57E-55 T 11-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AMK58_12795 bf7265b18c0988d463f36f7ae487e2b5 87 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 4 83 2.2E-33 T 11-10-2018 IPR011900 Glutaredoxin, GrxC GO:0045454 AMK58_12795 bf7265b18c0988d463f36f7ae487e2b5 87 ProSitePatterns PS00195 Glutaredoxin active site. 6 22 - T 11-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 AMK58_12795 bf7265b18c0988d463f36f7ae487e2b5 87 SUPERFAMILY SSF52833 1 84 6.36E-29 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_12795 bf7265b18c0988d463f36f7ae487e2b5 87 PRINTS PR00160 Glutaredoxin signature 61 74 1.7E-14 T 11-10-2018 IPR014025 Glutaredoxin subgroup AMK58_12795 bf7265b18c0988d463f36f7ae487e2b5 87 PRINTS PR00160 Glutaredoxin signature 4 22 1.7E-14 T 11-10-2018 IPR014025 Glutaredoxin subgroup AMK58_12795 bf7265b18c0988d463f36f7ae487e2b5 87 PRINTS PR00160 Glutaredoxin signature 47 60 1.7E-14 T 11-10-2018 IPR014025 Glutaredoxin subgroup AMK58_12795 bf7265b18c0988d463f36f7ae487e2b5 87 Pfam PF00462 Glutaredoxin 4 62 7.6E-24 T 11-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 AMK58_12795 bf7265b18c0988d463f36f7ae487e2b5 87 Gene3D G3DSA:3.40.30.10 1 84 9.6E-29 T 11-10-2018 AMK58_28485 cb3f056346719577e8df65a4d69f7123 108 SUPERFAMILY SSF49503 10 107 3.05E-22 T 11-10-2018 IPR008972 Cupredoxin AMK58_28485 cb3f056346719577e8df65a4d69f7123 108 Pfam PF13473 Cupredoxin-like domain 25 106 1.4E-7 T 11-10-2018 IPR028096 EfeO-type cupredoxin-like domain AMK58_28485 cb3f056346719577e8df65a4d69f7123 108 Gene3D G3DSA:2.60.40.420 19 107 8.5E-22 T 11-10-2018 IPR008972 Cupredoxin AMK58_28485 cb3f056346719577e8df65a4d69f7123 108 PRINTS PR00155 Amicyanin family signature 91 106 5.6E-9 T 11-10-2018 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 AMK58_28485 cb3f056346719577e8df65a4d69f7123 108 PRINTS PR00155 Amicyanin family signature 37 56 5.6E-9 T 11-10-2018 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 AMK58_09690 f79ea6d298e1c6e4d3d289463db69d0d 1015 Gene3D G3DSA:3.40.50.180 35 224 3.1E-63 T 11-10-2018 IPR035909 Methylesterase CheB, C-terminal AMK58_09690 f79ea6d298e1c6e4d3d289463db69d0d 1015 Gene3D G3DSA:3.30.450.20 861 994 1.5E-10 T 11-10-2018 AMK58_09690 f79ea6d298e1c6e4d3d289463db69d0d 1015 Gene3D G3DSA:3.30.450.20 732 860 2.3E-15 T 11-10-2018 AMK58_09690 f79ea6d298e1c6e4d3d289463db69d0d 1015 SUPERFAMILY SSF47757 234 307 1.57E-13 T 11-10-2018 AMK58_09690 f79ea6d298e1c6e4d3d289463db69d0d 1015 Pfam PF03705 CheR methyltransferase, all-alpha domain 243 291 8.3E-14 T 11-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal AMK58_09690 f79ea6d298e1c6e4d3d289463db69d0d 1015 SUPERFAMILY SSF55785 857 982 9.77E-8 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_09690 f79ea6d298e1c6e4d3d289463db69d0d 1015 SMART SM00138 239 500 1.4E-82 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMK58_09690 f79ea6d298e1c6e4d3d289463db69d0d 1015 Pfam PF01739 CheR methyltransferase, SAM binding domain 306 495 3.4E-54 T 11-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal AMK58_09690 f79ea6d298e1c6e4d3d289463db69d0d 1015 SUPERFAMILY SSF52738 37 221 1.83E-56 T 11-10-2018 IPR035909 Methylesterase CheB, C-terminal AMK58_09690 f79ea6d298e1c6e4d3d289463db69d0d 1015 Gene3D G3DSA:3.40.50.150 304 501 4.4E-61 T 11-10-2018 AMK58_09690 f79ea6d298e1c6e4d3d289463db69d0d 1015 Pfam PF01339 CheB methylesterase 41 216 1.3E-54 T 11-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AMK58_09690 f79ea6d298e1c6e4d3d289463db69d0d 1015 PRINTS PR00996 Glutamate methyltransferase family signature 261 274 2.3E-24 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMK58_09690 f79ea6d298e1c6e4d3d289463db69d0d 1015 PRINTS PR00996 Glutamate methyltransferase family signature 298 310 2.3E-24 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMK58_09690 f79ea6d298e1c6e4d3d289463db69d0d 1015 PRINTS PR00996 Glutamate methyltransferase family signature 374 390 2.3E-24 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMK58_09690 f79ea6d298e1c6e4d3d289463db69d0d 1015 PRINTS PR00996 Glutamate methyltransferase family signature 459 482 2.3E-24 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMK58_09690 f79ea6d298e1c6e4d3d289463db69d0d 1015 PRINTS PR00996 Glutamate methyltransferase family signature 440 454 2.3E-24 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMK58_09690 f79ea6d298e1c6e4d3d289463db69d0d 1015 PRINTS PR00996 Glutamate methyltransferase family signature 338 358 2.3E-24 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMK58_09690 f79ea6d298e1c6e4d3d289463db69d0d 1015 SUPERFAMILY SSF55785 734 854 1.26E-8 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_09690 f79ea6d298e1c6e4d3d289463db69d0d 1015 SUPERFAMILY SSF53335 305 492 2.3E-45 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_09690 f79ea6d298e1c6e4d3d289463db69d0d 1015 Pfam PF13596 PAS domain 749 854 5.9E-25 T 11-10-2018 AMK58_21865 83dba1af9ddadc54fce2e7d72ab52767 124 Gene3D G3DSA:3.40.50.2300 1 122 1.3E-24 T 11-10-2018 AMK58_21865 83dba1af9ddadc54fce2e7d72ab52767 124 Pfam PF00072 Response regulator receiver domain 7 87 6.3E-16 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_21865 83dba1af9ddadc54fce2e7d72ab52767 124 SUPERFAMILY SSF52172 5 118 2.13E-26 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_21865 83dba1af9ddadc54fce2e7d72ab52767 124 SMART SM00448 5 113 6.9E-15 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_29190 f25a37942e6e302ad51b9ad0132a3919 402 Pfam PF00534 Glycosyl transferases group 1 211 379 2.6E-15 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 AMK58_29190 f25a37942e6e302ad51b9ad0132a3919 402 Pfam PF12000 Gkycosyl transferase family 4 group 26 191 2.3E-69 T 11-10-2018 IPR022623 Domain of unknown function DUF3495 AMK58_29190 f25a37942e6e302ad51b9ad0132a3919 402 SUPERFAMILY SSF53756 29 400 9.42E-47 T 11-10-2018 AMK58_29190 f25a37942e6e302ad51b9ad0132a3919 402 Gene3D G3DSA:3.40.50.2000 205 382 1.5E-28 T 11-10-2018 AMK58_29190 f25a37942e6e302ad51b9ad0132a3919 402 Gene3D G3DSA:3.40.50.2000 3 204 4.5E-6 T 11-10-2018 AMK58_26540 3a1a68ea93bc33f54c069ba3047d09f7 259 SUPERFAMILY SSF52172 1 134 3.15E-10 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_26540 3a1a68ea93bc33f54c069ba3047d09f7 259 SMART SM00862 146 223 7.8E-23 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_26540 3a1a68ea93bc33f54c069ba3047d09f7 259 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 223 2.1E-20 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_26540 3a1a68ea93bc33f54c069ba3047d09f7 259 SUPERFAMILY SSF46894 120 225 1.59E-21 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMK58_26540 3a1a68ea93bc33f54c069ba3047d09f7 259 Gene3D G3DSA:3.40.50.2300 1 124 3.6E-11 T 11-10-2018 AMK58_26540 3a1a68ea93bc33f54c069ba3047d09f7 259 Gene3D G3DSA:1.10.10.10 125 233 5.7E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_14650 874bd1f4ec21ec80fd497d3579e1c850 123 SUPERFAMILY SSF52172 1 119 2.13E-31 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_14650 874bd1f4ec21ec80fd497d3579e1c850 123 SMART SM00448 1 116 2.1E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_14650 874bd1f4ec21ec80fd497d3579e1c850 123 Gene3D G3DSA:3.40.50.2300 1 123 2.1E-30 T 11-10-2018 AMK58_14650 874bd1f4ec21ec80fd497d3579e1c850 123 Pfam PF00072 Response regulator receiver domain 3 117 6.8E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_19905 e554fdbf4cd7a340742a5032ea9566c8 680 SMART SM00086 374 416 0.0061 T 11-10-2018 IPR001610 PAC motif AMK58_19905 e554fdbf4cd7a340742a5032ea9566c8 680 Gene3D G3DSA:3.30.450.20 288 426 1.3E-21 T 11-10-2018 AMK58_19905 e554fdbf4cd7a340742a5032ea9566c8 680 SUPERFAMILY SSF55874 487 659 5.63E-38 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_19905 e554fdbf4cd7a340742a5032ea9566c8 680 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 297 422 1.6E-16 T 11-10-2018 IPR000014 PAS domain AMK58_19905 e554fdbf4cd7a340742a5032ea9566c8 680 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 541 658 4.1E-19 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_19905 e554fdbf4cd7a340742a5032ea9566c8 680 Pfam PF08448 PAS fold 309 418 2.0E-9 T 11-10-2018 IPR013656 PAS fold-4 AMK58_19905 e554fdbf4cd7a340742a5032ea9566c8 680 SMART SM00091 301 367 2.8E-5 T 11-10-2018 IPR000014 PAS domain AMK58_19905 e554fdbf4cd7a340742a5032ea9566c8 680 Pfam PF00512 His Kinase A (phospho-acceptor) domain 432 495 4.5E-7 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_19905 e554fdbf4cd7a340742a5032ea9566c8 680 SMART SM00388 431 497 6.3E-6 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_19905 e554fdbf4cd7a340742a5032ea9566c8 680 SMART SM00387 538 660 5.3E-29 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_19905 e554fdbf4cd7a340742a5032ea9566c8 680 Gene3D G3DSA:1.10.287.130 427 495 8.0E-15 T 11-10-2018 AMK58_19905 e554fdbf4cd7a340742a5032ea9566c8 680 PRINTS PR00344 Bacterial sensor protein C-terminal signature 607 617 1.1E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_19905 e554fdbf4cd7a340742a5032ea9566c8 680 PRINTS PR00344 Bacterial sensor protein C-terminal signature 644 657 1.1E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_19905 e554fdbf4cd7a340742a5032ea9566c8 680 PRINTS PR00344 Bacterial sensor protein C-terminal signature 620 638 1.1E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_19905 e554fdbf4cd7a340742a5032ea9566c8 680 PRINTS PR00344 Bacterial sensor protein C-terminal signature 589 603 1.1E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_19905 e554fdbf4cd7a340742a5032ea9566c8 680 Pfam PF17159 Membrane-associated sensor domain 41 263 5.2E-76 T 11-10-2018 IPR033425 Membrane-associated sensor domain MASE3 AMK58_19905 e554fdbf4cd7a340742a5032ea9566c8 680 SUPERFAMILY SSF55785 293 414 2.27E-22 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_19905 e554fdbf4cd7a340742a5032ea9566c8 680 SUPERFAMILY SSF47384 422 495 7.65E-9 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_19905 e554fdbf4cd7a340742a5032ea9566c8 680 Gene3D G3DSA:3.30.565.10 501 661 2.1E-42 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_12320 f1f7c61371e19f384a33106e5409ec08 443 SMART SM00387 331 438 1.2E-13 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_12320 f1f7c61371e19f384a33106e5409ec08 443 SUPERFAMILY SSF47384 216 280 6.08E-6 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_12320 f1f7c61371e19f384a33106e5409ec08 443 SUPERFAMILY SSF55874 297 435 3.8E-20 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_12320 f1f7c61371e19f384a33106e5409ec08 443 Gene3D G3DSA:1.10.287.130 215 283 4.6E-9 T 11-10-2018 AMK58_12320 f1f7c61371e19f384a33106e5409ec08 443 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 337 435 1.5E-8 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_12320 f1f7c61371e19f384a33106e5409ec08 443 Gene3D G3DSA:3.30.565.10 292 438 3.0E-15 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_06635 fccb56b574b10cfe0f71d898524703cc 561 SMART SM00283 301 555 1.4E-43 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_06635 fccb56b574b10cfe0f71d898524703cc 561 Pfam PF17200 Single Cache domain 2 40 188 1.8E-32 T 11-10-2018 IPR033480 Single Cache domain 2 AMK58_06635 fccb56b574b10cfe0f71d898524703cc 561 Gene3D G3DSA:3.30.450.20 35 181 2.7E-39 T 11-10-2018 AMK58_06635 fccb56b574b10cfe0f71d898524703cc 561 Gene3D G3DSA:1.20.1480.50 182 268 1.7E-10 T 11-10-2018 AMK58_06635 fccb56b574b10cfe0f71d898524703cc 561 Gene3D G3DSA:1.10.287.950 269 557 1.4E-51 T 11-10-2018 AMK58_06635 fccb56b574b10cfe0f71d898524703cc 561 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 364 524 1.0E-27 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_06635 fccb56b574b10cfe0f71d898524703cc 561 SUPERFAMILY SSF58104 239 554 1.1E-59 T 11-10-2018 AMK58_06635 fccb56b574b10cfe0f71d898524703cc 561 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 329 358 1.4E-10 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_06635 fccb56b574b10cfe0f71d898524703cc 561 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 476 505 1.4E-10 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_06635 fccb56b574b10cfe0f71d898524703cc 561 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 428 457 1.4E-10 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_06635 fccb56b574b10cfe0f71d898524703cc 561 SMART SM00304 211 264 5.5E-4 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_06635 fccb56b574b10cfe0f71d898524703cc 561 SMART SM01049 34 127 2.2E-24 T 11-10-2018 IPR033480 Single Cache domain 2 AMK58_27990 346cd241bc7c59e5f261ebd685fe7715 555 Pfam PF09039 Mu DNA binding, I gamma subdomain 94 153 5.2E-5 T 11-10-2018 IPR015126 Mu DNA binding, I gamma subdomain AMK58_27990 346cd241bc7c59e5f261ebd685fe7715 555 SUPERFAMILY SSF50610 384 447 7.59E-7 T 11-10-2018 IPR009004 Transposase, Mu, C-terminal AMK58_27990 346cd241bc7c59e5f261ebd685fe7715 555 Pfam PF09299 Mu transposase, C-terminal 388 445 1.0E-14 T 11-10-2018 IPR015378 Transposase-like, Mu, C-terminal AMK58_27990 346cd241bc7c59e5f261ebd685fe7715 555 SUPERFAMILY SSF53098 166 363 1.77E-23 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMK58_27990 346cd241bc7c59e5f261ebd685fe7715 555 Gene3D G3DSA:3.30.420.10 164 384 1.5E-37 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMK58_27990 346cd241bc7c59e5f261ebd685fe7715 555 Pfam PF00665 Integrase core domain 169 304 3.2E-19 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMK58_03020 e0cc5025795cfe2be3e40cb257500c32 654 SUPERFAMILY SSF52954 536 640 1.39E-28 T 11-10-2018 AMK58_03020 e0cc5025795cfe2be3e40cb257500c32 654 PRINTS PR01047 Threonyl-tRNA synthetase signature 338 366 1.3E-52 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMK58_03020 e0cc5025795cfe2be3e40cb257500c32 654 PRINTS PR01047 Threonyl-tRNA synthetase signature 473 501 1.3E-52 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMK58_03020 e0cc5025795cfe2be3e40cb257500c32 654 PRINTS PR01047 Threonyl-tRNA synthetase signature 371 394 1.3E-52 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMK58_03020 e0cc5025795cfe2be3e40cb257500c32 654 PRINTS PR01047 Threonyl-tRNA synthetase signature 543 555 1.3E-52 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMK58_03020 e0cc5025795cfe2be3e40cb257500c32 654 PRINTS PR01047 Threonyl-tRNA synthetase signature 516 529 1.3E-52 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMK58_03020 e0cc5025795cfe2be3e40cb257500c32 654 Gene3D G3DSA:3.30.980.10 76 229 8.6E-63 T 11-10-2018 AMK58_03020 e0cc5025795cfe2be3e40cb257500c32 654 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 73 643 33.646 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMK58_03020 e0cc5025795cfe2be3e40cb257500c32 654 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 176 226 9.3E-13 T 11-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 AMK58_03020 e0cc5025795cfe2be3e40cb257500c32 654 SUPERFAMILY SSF55681 250 535 4.98E-98 T 11-10-2018 AMK58_03020 e0cc5025795cfe2be3e40cb257500c32 654 Gene3D G3DSA:3.30.930.10 230 540 1.7E-121 T 11-10-2018 AMK58_03020 e0cc5025795cfe2be3e40cb257500c32 654 SUPERFAMILY SSF81271 9 68 4.58E-15 T 11-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 AMK58_03020 e0cc5025795cfe2be3e40cb257500c32 654 SUPERFAMILY SSF55186 71 248 4.84E-64 T 11-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 AMK58_03020 e0cc5025795cfe2be3e40cb257500c32 654 Gene3D G3DSA:3.10.20.30 6 69 2.6E-22 T 11-10-2018 IPR012675 Beta-grasp domain superfamily AMK58_03020 e0cc5025795cfe2be3e40cb257500c32 654 SMART SM00863 176 226 1.8E-24 T 11-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 AMK58_03020 e0cc5025795cfe2be3e40cb257500c32 654 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 79 640 2.5E-209 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMK58_03020 e0cc5025795cfe2be3e40cb257500c32 654 Pfam PF02824 TGS domain 9 68 6.8E-9 T 11-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 AMK58_03020 e0cc5025795cfe2be3e40cb257500c32 654 Pfam PF03129 Anticodon binding domain 550 639 3.9E-17 T 11-10-2018 IPR004154 Anticodon-binding AMK58_03020 e0cc5025795cfe2be3e40cb257500c32 654 Gene3D G3DSA:3.40.50.800 541 647 1.0E-26 T 11-10-2018 IPR036621 Anticodon-binding domain superfamily AMK58_03020 e0cc5025795cfe2be3e40cb257500c32 654 Gene3D G3DSA:3.30.54.20 137 193 8.6E-63 T 11-10-2018 AMK58_03020 e0cc5025795cfe2be3e40cb257500c32 654 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 325 538 1.8E-43 T 11-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMK58_28350 ba4c88bd9c649a856fdf689bbbfd0834 427 SUPERFAMILY SSF46689 9 87 5.55E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_28350 ba4c88bd9c649a856fdf689bbbfd0834 427 Pfam PF00665 Integrase core domain 118 251 3.7E-21 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMK58_28350 ba4c88bd9c649a856fdf689bbbfd0834 427 SUPERFAMILY SSF53098 118 285 5.88E-14 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMK58_04645 662ae512659caeaaa8ffc47abdc87db2 176 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 11-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site AMK58_04645 662ae512659caeaaa8ffc47abdc87db2 176 Pfam PF02082 Transcriptional regulator 4 83 1.3E-24 T 11-10-2018 IPR000944 Transcription regulator Rrf2-type AMK58_04645 662ae512659caeaaa8ffc47abdc87db2 176 Gene3D G3DSA:1.10.10.10 2 147 3.3E-32 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_04645 662ae512659caeaaa8ffc47abdc87db2 176 SUPERFAMILY SSF46785 8 140 7.29E-32 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_04645 662ae512659caeaaa8ffc47abdc87db2 176 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 4 140 1.8E-30 T 11-10-2018 IPR000944 Transcription regulator Rrf2-type AMK58_14165 93bcc64440781308ff1ef63c44c5bb6d 263 SMART SM00062 38 258 2.1E-42 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMK58_14165 93bcc64440781308ff1ef63c44c5bb6d 263 SUPERFAMILY SSF53850 1 258 7.48E-57 T 11-10-2018 AMK58_14165 93bcc64440781308ff1ef63c44c5bb6d 263 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 61 74 - T 11-10-2018 IPR018313 Solute-binding protein family 3, conserved site AMK58_14165 93bcc64440781308ff1ef63c44c5bb6d 263 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 39 256 2.1E-50 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMK58_14165 93bcc64440781308ff1ef63c44c5bb6d 263 Gene3D G3DSA:3.40.190.10 33 250 3.9E-54 T 11-10-2018 AMK58_14165 93bcc64440781308ff1ef63c44c5bb6d 263 Gene3D G3DSA:3.40.190.10 125 216 3.9E-54 T 11-10-2018 AMK58_08415 29e8e781d0ffe6dfd7aa7503a0ece00b 608 Gene3D G3DSA:3.30.70.870 306 591 8.9E-131 T 11-10-2018 AMK58_08415 29e8e781d0ffe6dfd7aa7503a0ece00b 608 Gene3D G3DSA:3.40.50.300 1 197 1.7E-62 T 11-10-2018 AMK58_08415 29e8e781d0ffe6dfd7aa7503a0ece00b 608 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 1 148 1.2E-23 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMK58_08415 29e8e781d0ffe6dfd7aa7503a0ece00b 608 Pfam PF00679 Elongation factor G C-terminus 399 482 4.0E-20 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like AMK58_08415 29e8e781d0ffe6dfd7aa7503a0ece00b 608 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 42 57 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site AMK58_08415 29e8e781d0ffe6dfd7aa7503a0ece00b 608 SUPERFAMILY SSF54980 400 514 2.83E-25 T 11-10-2018 IPR035647 EF-G domain III/V-like AMK58_08415 29e8e781d0ffe6dfd7aa7503a0ece00b 608 Gene3D G3DSA:2.40.30.10 198 299 1.5E-31 T 11-10-2018 AMK58_08415 29e8e781d0ffe6dfd7aa7503a0ece00b 608 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 3 600 2.5E-283 T 11-10-2018 IPR006298 GTP-binding protein TypA GO:0005525 AMK58_08415 29e8e781d0ffe6dfd7aa7503a0ece00b 608 Pfam PF00009 Elongation factor Tu GTP binding domain 2 194 2.0E-54 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_08415 29e8e781d0ffe6dfd7aa7503a0ece00b 608 Pfam PF03144 Elongation factor Tu domain 2 218 289 1.1E-11 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AMK58_08415 29e8e781d0ffe6dfd7aa7503a0ece00b 608 PRINTS PR00315 GTP-binding elongation factor signature 85 96 4.8E-15 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_08415 29e8e781d0ffe6dfd7aa7503a0ece00b 608 PRINTS PR00315 GTP-binding elongation factor signature 49 57 4.8E-15 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_08415 29e8e781d0ffe6dfd7aa7503a0ece00b 608 PRINTS PR00315 GTP-binding elongation factor signature 69 79 4.8E-15 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_08415 29e8e781d0ffe6dfd7aa7503a0ece00b 608 PRINTS PR00315 GTP-binding elongation factor signature 121 130 4.8E-15 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_08415 29e8e781d0ffe6dfd7aa7503a0ece00b 608 PRINTS PR00315 GTP-binding elongation factor signature 5 18 4.8E-15 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_08415 29e8e781d0ffe6dfd7aa7503a0ece00b 608 Gene3D G3DSA:2.40.50.250 484 600 8.9E-131 T 11-10-2018 AMK58_08415 29e8e781d0ffe6dfd7aa7503a0ece00b 608 SUPERFAMILY SSF50447 150 297 1.1E-28 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMK58_08415 29e8e781d0ffe6dfd7aa7503a0ece00b 608 SUPERFAMILY SSF54980 302 387 3.36E-13 T 11-10-2018 IPR035647 EF-G domain III/V-like AMK58_08415 29e8e781d0ffe6dfd7aa7503a0ece00b 608 SUPERFAMILY SSF52540 3 205 5.9E-54 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_08415 29e8e781d0ffe6dfd7aa7503a0ece00b 608 Gene3D G3DSA:3.30.70.240 389 483 8.9E-131 T 11-10-2018 AMK58_17830 e1c39b80ffd674697f3b9c704032581c 249 SMART SM00358 177 244 7.7E-23 T 11-10-2018 IPR014720 Double-stranded RNA-binding domain AMK58_17830 e1c39b80ffd674697f3b9c704032581c 249 Pfam PF14622 Ribonuclease-III-like 31 163 2.6E-29 T 11-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 AMK58_17830 e1c39b80ffd674697f3b9c704032581c 249 SMART SM00535 29 172 4.0E-44 T 11-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 AMK58_17830 e1c39b80ffd674697f3b9c704032581c 249 SUPERFAMILY SSF69065 10 169 1.62E-41 T 11-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 AMK58_17830 e1c39b80ffd674697f3b9c704032581c 249 Hamap MF_00104 Ribonuclease 3 [rnc]. 17 240 26.883 T 11-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 AMK58_17830 e1c39b80ffd674697f3b9c704032581c 249 ProSitePatterns PS00517 Ribonuclease III family signature. 61 69 - T 11-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 AMK58_17830 e1c39b80ffd674697f3b9c704032581c 249 SUPERFAMILY SSF54768 133 245 9.74E-28 T 11-10-2018 AMK58_17830 e1c39b80ffd674697f3b9c704032581c 249 Pfam PF00035 Double-stranded RNA binding motif 178 243 7.7E-15 T 11-10-2018 IPR014720 Double-stranded RNA-binding domain AMK58_17830 e1c39b80ffd674697f3b9c704032581c 249 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 19 243 4.8E-65 T 11-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 AMK58_17830 e1c39b80ffd674697f3b9c704032581c 249 Gene3D G3DSA:3.30.160.20 176 248 3.6E-21 T 11-10-2018 AMK58_17830 e1c39b80ffd674697f3b9c704032581c 249 Gene3D G3DSA:1.10.1520.10 13 170 4.4E-39 T 11-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 AMK58_22115 3def492d36dffbf0dc2dd096b0dba65c 466 Gene3D G3DSA:3.90.1300.10 1 465 2.8E-138 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMK58_22115 3def492d36dffbf0dc2dd096b0dba65c 466 SUPERFAMILY SSF75304 4 458 1.7E-128 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMK58_22115 3def492d36dffbf0dc2dd096b0dba65c 466 Pfam PF01425 Amidase 26 449 2.0E-100 T 11-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMK58_00570 47c14613537e85452800c9d6b581eb12 199 Pfam PF01810 LysE type translocator 13 198 7.6E-36 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMK58_25365 04f2242bb138abeaad49edebedf27286 242 Pfam PF00460 Flagella basal body rod protein 5 35 7.2E-11 T 11-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 AMK58_25365 04f2242bb138abeaad49edebedf27286 242 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 11-10-2018 IPR019776 Flagellar basal body rod protein, conserved site AMK58_25365 04f2242bb138abeaad49edebedf27286 242 SUPERFAMILY SSF117143 79 199 7.32E-20 T 11-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like AMK58_25365 04f2242bb138abeaad49edebedf27286 242 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 166 236 1.2E-14 T 11-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain AMK58_25365 04f2242bb138abeaad49edebedf27286 242 TIGRFAM TIGR02490 flgF: flagellar basal-body rod protein FlgF 5 218 1.4E-60 T 11-10-2018 IPR012836 Flagellar basal-body rod FlgF GO:0030694|GO:0071973 AMK58_25365 04f2242bb138abeaad49edebedf27286 242 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 5 122 1.3E-40 T 11-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G AMK58_21155 4799591d5b98b79724f3f004b65ffc1e 219 SMART SM00448 1 112 4.4E-38 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_21155 4799591d5b98b79724f3f004b65ffc1e 219 Pfam PF00072 Response regulator receiver domain 4 113 4.6E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_21155 4799591d5b98b79724f3f004b65ffc1e 219 Gene3D G3DSA:3.40.50.2300 1 121 3.9E-41 T 11-10-2018 AMK58_21155 4799591d5b98b79724f3f004b65ffc1e 219 SMART SM00862 145 216 1.4E-25 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_21155 4799591d5b98b79724f3f004b65ffc1e 219 SUPERFAMILY SSF52172 1 180 3.37E-38 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_21155 4799591d5b98b79724f3f004b65ffc1e 219 Gene3D G3DSA:1.10.10.10 122 218 1.4E-29 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_21155 4799591d5b98b79724f3f004b65ffc1e 219 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 216 2.5E-23 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_23105 cbc560ea2be00e5e2d33694f8b6996e8 2397 Pfam PF00501 AMP-binding enzyme 1534 1938 1.2E-100 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMK58_23105 cbc560ea2be00e5e2d33694f8b6996e8 2397 Pfam PF00501 AMP-binding enzyme 469 879 2.6E-88 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMK58_23105 cbc560ea2be00e5e2d33694f8b6996e8 2397 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1553 1962 1.2E-128 T 11-10-2018 IPR010071 Amino acid adenylation domain AMK58_23105 cbc560ea2be00e5e2d33694f8b6996e8 2397 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 490 903 1.9E-112 T 11-10-2018 IPR010071 Amino acid adenylation domain AMK58_23105 cbc560ea2be00e5e2d33694f8b6996e8 2397 SUPERFAMILY SSF56801 434 996 1.28E-135 T 11-10-2018 AMK58_23105 cbc560ea2be00e5e2d33694f8b6996e8 2397 SUPERFAMILY SSF52777 9 186 2.56E-26 T 11-10-2018 AMK58_23105 cbc560ea2be00e5e2d33694f8b6996e8 2397 Gene3D G3DSA:3.30.559.30 1264 1510 4.1E-101 T 11-10-2018 AMK58_23105 cbc560ea2be00e5e2d33694f8b6996e8 2397 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1008 1023 - T 11-10-2018 IPR006162 Phosphopantetheine attachment site AMK58_23105 cbc560ea2be00e5e2d33694f8b6996e8 2397 Gene3D G3DSA:1.10.1200.10 971 1054 5.0E-19 T 11-10-2018 IPR036736 ACP-like superfamily AMK58_23105 cbc560ea2be00e5e2d33694f8b6996e8 2397 Gene3D G3DSA:3.30.300.30 1932 2045 1.6E-32 T 11-10-2018 AMK58_23105 cbc560ea2be00e5e2d33694f8b6996e8 2397 SUPERFAMILY SSF52777 1074 1278 4.45E-34 T 11-10-2018 AMK58_23105 cbc560ea2be00e5e2d33694f8b6996e8 2397 Gene3D G3DSA:3.30.559.30 214 436 1.7E-52 T 11-10-2018 AMK58_23105 cbc560ea2be00e5e2d33694f8b6996e8 2397 Pfam PF00975 Thioesterase domain 2152 2367 1.9E-28 T 11-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 AMK58_23105 cbc560ea2be00e5e2d33694f8b6996e8 2397 SUPERFAMILY SSF47336 978 1045 7.98E-12 T 11-10-2018 IPR036736 ACP-like superfamily AMK58_23105 cbc560ea2be00e5e2d33694f8b6996e8 2397 Pfam PF00668 Condensation domain 1079 1513 7.4E-56 T 11-10-2018 IPR001242 Condensation domain AMK58_23105 cbc560ea2be00e5e2d33694f8b6996e8 2397 Pfam PF00668 Condensation domain 3 428 3.7E-55 T 11-10-2018 IPR001242 Condensation domain AMK58_23105 cbc560ea2be00e5e2d33694f8b6996e8 2397 SUPERFAMILY SSF52777 195 430 6.89E-37 T 11-10-2018 AMK58_23105 cbc560ea2be00e5e2d33694f8b6996e8 2397 SUPERFAMILY SSF47336 2049 2121 5.23E-16 T 11-10-2018 IPR036736 ACP-like superfamily AMK58_23105 cbc560ea2be00e5e2d33694f8b6996e8 2397 Pfam PF13193 AMP-binding enzyme C-terminal domain 887 961 4.8E-11 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMK58_23105 cbc560ea2be00e5e2d33694f8b6996e8 2397 Pfam PF13193 AMP-binding enzyme C-terminal domain 1946 2028 6.6E-10 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMK58_23105 cbc560ea2be00e5e2d33694f8b6996e8 2397 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1675 1686 - T 11-10-2018 IPR020845 AMP-binding, conserved site AMK58_23105 cbc560ea2be00e5e2d33694f8b6996e8 2397 ProSitePatterns PS00455 Putative AMP-binding domain signature. 616 627 - T 11-10-2018 IPR020845 AMP-binding, conserved site AMK58_23105 cbc560ea2be00e5e2d33694f8b6996e8 2397 Gene3D G3DSA:3.30.559.10 1083 1448 4.1E-101 T 11-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 AMK58_23105 cbc560ea2be00e5e2d33694f8b6996e8 2397 Gene3D G3DSA:3.30.559.10 7 209 4.4E-45 T 11-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 AMK58_23105 cbc560ea2be00e5e2d33694f8b6996e8 2397 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2079 2094 - T 11-10-2018 IPR006162 Phosphopantetheine attachment site AMK58_23105 cbc560ea2be00e5e2d33694f8b6996e8 2397 SUPERFAMILY SSF53474 2136 2379 5.62E-44 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_23105 cbc560ea2be00e5e2d33694f8b6996e8 2397 SUPERFAMILY SSF56801 1494 2067 1.57E-154 T 11-10-2018 AMK58_23105 cbc560ea2be00e5e2d33694f8b6996e8 2397 Gene3D G3DSA:3.40.50.12780 1525 1930 8.2E-139 T 11-10-2018 AMK58_23105 cbc560ea2be00e5e2d33694f8b6996e8 2397 Gene3D G3DSA:3.40.50.1820 2046 2382 6.0E-103 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_23105 cbc560ea2be00e5e2d33694f8b6996e8 2397 SUPERFAMILY SSF52777 1264 1497 6.23E-43 T 11-10-2018 AMK58_23105 cbc560ea2be00e5e2d33694f8b6996e8 2397 Gene3D G3DSA:3.30.300.30 873 970 1.8E-29 T 11-10-2018 AMK58_23105 cbc560ea2be00e5e2d33694f8b6996e8 2397 Gene3D G3DSA:3.40.50.12780 455 872 5.1E-122 T 11-10-2018 AMK58_23105 cbc560ea2be00e5e2d33694f8b6996e8 2397 Pfam PF00550 Phosphopantetheine attachment site 2057 2120 6.2E-12 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain AMK58_23105 cbc560ea2be00e5e2d33694f8b6996e8 2397 Pfam PF00550 Phosphopantetheine attachment site 987 1045 3.4E-9 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain AMK58_23105 cbc560ea2be00e5e2d33694f8b6996e8 2397 SMART SM00824 Thioesterase 2154 2377 1.1E-4 T 11-10-2018 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 AMK58_23105 cbc560ea2be00e5e2d33694f8b6996e8 2397 SMART SM00823 Phosphopantetheine attachment site 2054 2124 5.4E-4 T 11-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 AMK58_23105 cbc560ea2be00e5e2d33694f8b6996e8 2397 SMART SM00823 Phosphopantetheine attachment site 984 1052 0.0066 T 11-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 AMK58_19760 9a8d6e7ce55ad38d726d4ce38e67c217 236 SUPERFAMILY SSF46689 189 235 1.08E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_19760 9a8d6e7ce55ad38d726d4ce38e67c217 236 SMART SM00342 151 234 6.2E-23 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMK58_19760 9a8d6e7ce55ad38d726d4ce38e67c217 236 Pfam PF12833 Helix-turn-helix domain 159 235 4.9E-23 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMK58_19760 9a8d6e7ce55ad38d726d4ce38e67c217 236 SUPERFAMILY SSF51182 37 135 1.36E-14 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily AMK58_19760 9a8d6e7ce55ad38d726d4ce38e67c217 236 Pfam PF07883 Cupin domain 38 84 1.8E-9 T 11-10-2018 IPR013096 Cupin 2, conserved barrel AMK58_19760 9a8d6e7ce55ad38d726d4ce38e67c217 236 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 189 230 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMK58_19760 9a8d6e7ce55ad38d726d4ce38e67c217 236 Gene3D G3DSA:2.60.120.10 28 100 2.9E-13 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_19760 9a8d6e7ce55ad38d726d4ce38e67c217 236 Gene3D G3DSA:1.10.10.60 150 236 3.0E-23 T 11-10-2018 AMK58_08805 52abbc49155a24ce649e80022e21fd30 327 SUPERFAMILY SSF46785 1 107 1.55E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_08805 52abbc49155a24ce649e80022e21fd30 327 Pfam PF08241 Methyltransferase domain 153 249 5.9E-25 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 AMK58_08805 52abbc49155a24ce649e80022e21fd30 327 Gene3D G3DSA:3.40.50.150 104 292 1.5E-39 T 11-10-2018 AMK58_08805 52abbc49155a24ce649e80022e21fd30 327 SUPERFAMILY SSF53335 114 297 1.45E-38 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_08805 52abbc49155a24ce649e80022e21fd30 327 Pfam PF01022 Bacterial regulatory protein, arsR family 15 58 3.6E-11 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMK58_08805 52abbc49155a24ce649e80022e21fd30 327 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 27 38 5.7E-12 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMK58_08805 52abbc49155a24ce649e80022e21fd30 327 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 8 23 5.7E-12 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMK58_08805 52abbc49155a24ce649e80022e21fd30 327 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 40 55 5.7E-12 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMK58_08805 52abbc49155a24ce649e80022e21fd30 327 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 55 70 5.7E-12 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMK58_08805 52abbc49155a24ce649e80022e21fd30 327 Gene3D G3DSA:1.10.10.10 1 90 3.9E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_08805 52abbc49155a24ce649e80022e21fd30 327 SMART SM00418 6 88 6.7E-19 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMK58_13235 f3327ea41f4bf69bc86cf75abbd64970 480 Pfam PF12844 Helix-turn-helix domain 10 67 1.1E-10 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMK58_13235 f3327ea41f4bf69bc86cf75abbd64970 480 PIRSF PIRSF019251 1 476 6.8E-196 T 11-10-2018 IPR026281 HTH-type transcriptional regulator RamB GO:0006355 AMK58_13235 f3327ea41f4bf69bc86cf75abbd64970 480 Gene3D G3DSA:1.10.260.40 4 80 3.3E-14 T 11-10-2018 AMK58_13235 f3327ea41f4bf69bc86cf75abbd64970 480 Pfam PF06114 IrrE N-terminal-like domain 193 315 6.4E-18 T 11-10-2018 IPR010359 IrrE N-terminal-like domain AMK58_13235 f3327ea41f4bf69bc86cf75abbd64970 480 Pfam PF09856 Predicted transcriptional regulator (DUF2083) 316 472 5.6E-69 T 11-10-2018 IPR018653 Domain of unknown function DUF2083,transcriptional regulator AMK58_13235 f3327ea41f4bf69bc86cf75abbd64970 480 SUPERFAMILY SSF47413 4 70 2.39E-14 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMK58_13235 f3327ea41f4bf69bc86cf75abbd64970 480 SMART SM00530 10 65 1.3E-12 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMK58_08545 eb6252f3f567e6ef432c3353767ff058 623 Pfam PF01594 AI-2E family transporter 30 135 1.7E-13 T 11-10-2018 IPR002549 Transmembrane protein TqsA-like AMK58_08545 eb6252f3f567e6ef432c3353767ff058 623 Pfam PF01594 AI-2E family transporter 184 378 1.7E-36 T 11-10-2018 IPR002549 Transmembrane protein TqsA-like AMK58_01535 b35189ced20ad86a33a355e7c8f3c429 559 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 28 176 2.9E-34 T 11-10-2018 IPR006512 YidE/YbjL duplication AMK58_01535 b35189ced20ad86a33a355e7c8f3c429 559 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 389 542 1.8E-45 T 11-10-2018 IPR006512 YidE/YbjL duplication AMK58_01535 b35189ced20ad86a33a355e7c8f3c429 559 Gene3D G3DSA:3.30.70.1450 207 285 1.2E-9 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 AMK58_01535 b35189ced20ad86a33a355e7c8f3c429 559 SUPERFAMILY SSF116726 217 285 4.71E-11 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 AMK58_01535 b35189ced20ad86a33a355e7c8f3c429 559 Gene3D G3DSA:3.30.70.1450 301 374 5.2E-10 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 AMK58_01535 b35189ced20ad86a33a355e7c8f3c429 559 SUPERFAMILY SSF116726 303 370 2.22E-12 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 AMK58_01535 b35189ced20ad86a33a355e7c8f3c429 559 Pfam PF06826 Predicted Permease Membrane Region 384 555 2.4E-45 T 11-10-2018 IPR006512 YidE/YbjL duplication AMK58_01535 b35189ced20ad86a33a355e7c8f3c429 559 Pfam PF06826 Predicted Permease Membrane Region 21 189 2.5E-40 T 11-10-2018 IPR006512 YidE/YbjL duplication AMK58_01535 b35189ced20ad86a33a355e7c8f3c429 559 Pfam PF02080 TrkA-C domain 305 370 1.8E-11 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AMK58_01535 b35189ced20ad86a33a355e7c8f3c429 559 Pfam PF02080 TrkA-C domain 221 285 1.1E-8 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AMK58_08660 e09a10bf111cb84cbbe70b3bec279f2a 451 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 389 417 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AMK58_08660 e09a10bf111cb84cbbe70b3bec279f2a 451 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 6 438 37.779 T 11-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 AMK58_08660 e09a10bf111cb84cbbe70b3bec279f2a 451 Pfam PF12804 MobA-like NTP transferase domain 9 132 4.8E-24 T 11-10-2018 IPR025877 MobA-like NTP transferase AMK58_08660 e09a10bf111cb84cbbe70b3bec279f2a 451 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 382 414 1.2E-7 T 11-10-2018 IPR001451 Hexapeptide repeat AMK58_08660 e09a10bf111cb84cbbe70b3bec279f2a 451 Gene3D G3DSA:2.160.10.10 251 426 4.7E-47 T 11-10-2018 AMK58_08660 e09a10bf111cb84cbbe70b3bec279f2a 451 SUPERFAMILY SSF51161 263 424 4.2E-44 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily AMK58_08660 e09a10bf111cb84cbbe70b3bec279f2a 451 SUPERFAMILY SSF53448 7 254 4.06E-55 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_08660 e09a10bf111cb84cbbe70b3bec279f2a 451 Gene3D G3DSA:3.90.550.10 1 250 6.4E-66 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_08660 e09a10bf111cb84cbbe70b3bec279f2a 451 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 307 338 3.5E-6 T 11-10-2018 IPR001451 Hexapeptide repeat AMK58_08660 e09a10bf111cb84cbbe70b3bec279f2a 451 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 268 301 2.8E-5 T 11-10-2018 IPR001451 Hexapeptide repeat AMK58_08660 e09a10bf111cb84cbbe70b3bec279f2a 451 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 8 439 4.8E-150 T 11-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 AMK58_25120 e907e9df536f463d0a00abdcf84d1571 276 SUPERFAMILY SSF48452 57 250 1.32E-24 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_25120 e907e9df536f463d0a00abdcf84d1571 276 SMART SM00028 57 90 1.2 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_25120 e907e9df536f463d0a00abdcf84d1571 276 SMART SM00028 91 124 110.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_25120 e907e9df536f463d0a00abdcf84d1571 276 SMART SM00028 125 158 44.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_25120 e907e9df536f463d0a00abdcf84d1571 276 SMART SM00028 159 192 3.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_25120 e907e9df536f463d0a00abdcf84d1571 276 Pfam PF13429 Tetratricopeptide repeat 49 188 2.4E-8 T 11-10-2018 AMK58_25120 e907e9df536f463d0a00abdcf84d1571 276 Gene3D G3DSA:1.25.40.10 21 271 8.2E-31 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_01110 31f4e8295b631c119b16837a03d31c6a 1120 SUPERFAMILY SSF55874 521 698 8.91E-45 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_01110 31f4e8295b631c119b16837a03d31c6a 1120 SUPERFAMILY SSF47226 1000 1112 4.71E-18 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMK58_01110 31f4e8295b631c119b16837a03d31c6a 1120 SMART SM00448 862 981 6.7E-38 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_01110 31f4e8295b631c119b16837a03d31c6a 1120 Pfam PF01627 Hpt domain 1023 1107 1.8E-10 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMK58_01110 31f4e8295b631c119b16837a03d31c6a 1120 Gene3D G3DSA:1.10.287.130 444 530 7.3E-26 T 11-10-2018 AMK58_01110 31f4e8295b631c119b16837a03d31c6a 1120 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 579 699 1.6E-29 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_01110 31f4e8295b631c119b16837a03d31c6a 1120 Pfam PF00072 Response regulator receiver domain 864 981 5.7E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_01110 31f4e8295b631c119b16837a03d31c6a 1120 Gene3D G3DSA:3.40.50.2300 861 994 2.0E-38 T 11-10-2018 AMK58_01110 31f4e8295b631c119b16837a03d31c6a 1120 SUPERFAMILY SSF55785 198 326 5.93E-11 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_01110 31f4e8295b631c119b16837a03d31c6a 1120 SMART SM00388 467 532 5.3E-23 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_01110 31f4e8295b631c119b16837a03d31c6a 1120 Gene3D G3DSA:1.20.120.160 996 1114 1.2E-20 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMK58_01110 31f4e8295b631c119b16837a03d31c6a 1120 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 336 454 6.0E-19 T 11-10-2018 IPR000014 PAS domain AMK58_01110 31f4e8295b631c119b16837a03d31c6a 1120 SUPERFAMILY SSF55785 325 445 1.61E-23 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_01110 31f4e8295b631c119b16837a03d31c6a 1120 Gene3D G3DSA:3.30.450.20 330 443 6.2E-25 T 11-10-2018 AMK58_01110 31f4e8295b631c119b16837a03d31c6a 1120 Gene3D G3DSA:3.30.565.10 531 700 9.9E-50 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_01110 31f4e8295b631c119b16837a03d31c6a 1120 Pfam PF12860 PAS fold 220 332 2.2E-29 T 11-10-2018 AMK58_01110 31f4e8295b631c119b16837a03d31c6a 1120 Pfam PF12860 PAS fold 92 206 4.1E-18 T 11-10-2018 AMK58_01110 31f4e8295b631c119b16837a03d31c6a 1120 SUPERFAMILY SSF52172 861 986 1.99E-36 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_01110 31f4e8295b631c119b16837a03d31c6a 1120 PRINTS PR00344 Bacterial sensor protein C-terminal signature 625 639 5.4E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_01110 31f4e8295b631c119b16837a03d31c6a 1120 PRINTS PR00344 Bacterial sensor protein C-terminal signature 660 678 5.4E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_01110 31f4e8295b631c119b16837a03d31c6a 1120 PRINTS PR00344 Bacterial sensor protein C-terminal signature 684 697 5.4E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_01110 31f4e8295b631c119b16837a03d31c6a 1120 SMART SM00387 579 700 3.2E-36 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_01110 31f4e8295b631c119b16837a03d31c6a 1120 Gene3D G3DSA:3.30.450.20 207 329 2.0E-10 T 11-10-2018 AMK58_01110 31f4e8295b631c119b16837a03d31c6a 1120 Gene3D G3DSA:3.30.450.20 73 206 2.2E-7 T 11-10-2018 AMK58_01110 31f4e8295b631c119b16837a03d31c6a 1120 Pfam PF00512 His Kinase A (phospho-acceptor) domain 467 532 5.1E-18 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_01110 31f4e8295b631c119b16837a03d31c6a 1120 Pfam PF13426 PAS domain 351 446 3.7E-12 T 11-10-2018 IPR000014 PAS domain AMK58_01110 31f4e8295b631c119b16837a03d31c6a 1120 SMART SM00091 340 405 6.4E-11 T 11-10-2018 IPR000014 PAS domain AMK58_01110 31f4e8295b631c119b16837a03d31c6a 1120 SMART SM00091 85 151 92.0 T 11-10-2018 IPR000014 PAS domain AMK58_01110 31f4e8295b631c119b16837a03d31c6a 1120 SMART SM00091 213 281 16.0 T 11-10-2018 IPR000014 PAS domain AMK58_01110 31f4e8295b631c119b16837a03d31c6a 1120 SUPERFAMILY SSF55785 73 199 9.16E-6 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_01110 31f4e8295b631c119b16837a03d31c6a 1120 SUPERFAMILY SSF47384 453 533 3.73E-20 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_25885 34e7c300ab60281972803136a5d9bf25 846 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 14 146 3.5E-28 T 11-10-2018 IPR002178 PTS EIIA type-2 domain AMK58_25885 34e7c300ab60281972803136a5d9bf25 846 Gene3D G3DSA:1.10.274.10 300 422 2.8E-60 T 11-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 AMK58_25885 34e7c300ab60281972803136a5d9bf25 846 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 283 841 1.2E-135 T 11-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 AMK58_25885 34e7c300ab60281972803136a5d9bf25 846 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 173 247 1.1E-14 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like AMK58_25885 34e7c300ab60281972803136a5d9bf25 846 SUPERFAMILY SSF55804 13 150 5.62E-34 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 AMK58_25885 34e7c300ab60281972803136a5d9bf25 846 Gene3D G3DSA:3.20.20.60 511 845 2.7E-111 T 11-10-2018 AMK58_25885 34e7c300ab60281972803136a5d9bf25 846 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 179 186 - T 11-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site AMK58_25885 34e7c300ab60281972803136a5d9bf25 846 SUPERFAMILY SSF52009 401 520 3.4E-27 T 11-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 AMK58_25885 34e7c300ab60281972803136a5d9bf25 846 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 461 472 - T 11-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 AMK58_25885 34e7c300ab60281972803136a5d9bf25 846 Gene3D G3DSA:3.50.30.10 283 510 2.8E-60 T 11-10-2018 AMK58_25885 34e7c300ab60281972803136a5d9bf25 846 Gene3D G3DSA:3.40.930.10 12 151 3.9E-31 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 AMK58_25885 34e7c300ab60281972803136a5d9bf25 846 Pfam PF00391 PEP-utilising enzyme, mobile domain 431 502 3.5E-20 T 11-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AMK58_25885 34e7c300ab60281972803136a5d9bf25 846 Gene3D G3DSA:3.30.1340.10 169 252 2.3E-18 T 11-10-2018 IPR035895 HPr-like superfamily AMK58_25885 34e7c300ab60281972803136a5d9bf25 846 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 724 742 - T 11-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 AMK58_25885 34e7c300ab60281972803136a5d9bf25 846 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 58 74 - T 11-10-2018 IPR002178 PTS EIIA type-2 domain AMK58_25885 34e7c300ab60281972803136a5d9bf25 846 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 528 816 9.3E-104 T 11-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 AMK58_25885 34e7c300ab60281972803136a5d9bf25 846 SUPERFAMILY SSF51621 528 819 3.4E-98 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMK58_25885 34e7c300ab60281972803136a5d9bf25 846 PRINTS PR00107 Phosphocarrier protein signature 179 195 6.1E-10 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like AMK58_25885 34e7c300ab60281972803136a5d9bf25 846 PRINTS PR00107 Phosphocarrier protein signature 204 219 6.1E-10 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like AMK58_25885 34e7c300ab60281972803136a5d9bf25 846 PRINTS PR00107 Phosphocarrier protein signature 219 236 6.1E-10 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like AMK58_25885 34e7c300ab60281972803136a5d9bf25 846 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 724 739 4.6E-21 T 11-10-2018 AMK58_25885 34e7c300ab60281972803136a5d9bf25 846 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 777 789 4.6E-21 T 11-10-2018 AMK58_25885 34e7c300ab60281972803136a5d9bf25 846 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 741 756 4.6E-21 T 11-10-2018 AMK58_25885 34e7c300ab60281972803136a5d9bf25 846 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 570 589 4.6E-21 T 11-10-2018 AMK58_25885 34e7c300ab60281972803136a5d9bf25 846 Pfam PF00381 PTS HPr component phosphorylation site 172 247 2.2E-18 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like AMK58_25885 34e7c300ab60281972803136a5d9bf25 846 SUPERFAMILY SSF55594 170 248 2.49E-18 T 11-10-2018 IPR035895 HPr-like superfamily AMK58_25885 34e7c300ab60281972803136a5d9bf25 846 Pfam PF05524 PEP-utilising enzyme, N-terminal 283 401 4.7E-20 T 11-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 AMK58_25885 34e7c300ab60281972803136a5d9bf25 846 SUPERFAMILY SSF47831 317 416 1.83E-22 T 11-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 AMK58_19360 4d3a7a258ca9669be170e0fb9ad1d5eb 361 Gene3D G3DSA:3.40.50.150 1 253 1.1E-68 T 11-10-2018 AMK58_19360 4d3a7a258ca9669be170e0fb9ad1d5eb 361 SUPERFAMILY SSF53335 200 352 2.27E-6 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_19360 4d3a7a258ca9669be170e0fb9ad1d5eb 361 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 27 33 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMK58_19360 4d3a7a258ca9669be170e0fb9ad1d5eb 361 SUPERFAMILY SSF53335 2 250 5.33E-71 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_19360 4d3a7a258ca9669be170e0fb9ad1d5eb 361 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 23 37 1.1E-37 T 11-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 AMK58_19360 4d3a7a258ca9669be170e0fb9ad1d5eb 361 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 206 224 1.1E-37 T 11-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 AMK58_19360 4d3a7a258ca9669be170e0fb9ad1d5eb 361 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 72 92 1.1E-37 T 11-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 AMK58_19360 4d3a7a258ca9669be170e0fb9ad1d5eb 361 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 187 204 1.1E-37 T 11-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 AMK58_19360 4d3a7a258ca9669be170e0fb9ad1d5eb 361 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 229 249 1.1E-37 T 11-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 AMK58_19360 4d3a7a258ca9669be170e0fb9ad1d5eb 361 Pfam PF01555 DNA methylase 24 244 1.4E-55 T 11-10-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 AMK58_20450 fdbcf0a4410f1254d452701e5a4a8372 259 Gene3D G3DSA:3.40.190.10 106 209 4.7E-89 T 11-10-2018 AMK58_20450 fdbcf0a4410f1254d452701e5a4a8372 259 Gene3D G3DSA:3.40.190.10 25 256 4.7E-89 T 11-10-2018 AMK58_20450 fdbcf0a4410f1254d452701e5a4a8372 259 Pfam PF03180 NLPA lipoprotein 25 259 7.0E-85 T 11-10-2018 IPR004872 Lipoprotein NlpA family AMK58_20450 fdbcf0a4410f1254d452701e5a4a8372 259 PIRSF PIRSF002854 1 259 2.9E-89 T 11-10-2018 IPR004872 Lipoprotein NlpA family AMK58_20450 fdbcf0a4410f1254d452701e5a4a8372 259 SUPERFAMILY SSF53850 25 259 9.71E-82 T 11-10-2018 AMK58_03925 13f31c5aa5f9b19cc12f57250eaae98f 379 Gene3D G3DSA:3.40.50.2000 168 350 7.5E-95 T 11-10-2018 AMK58_03925 13f31c5aa5f9b19cc12f57250eaae98f 379 SUPERFAMILY SSF53756 8 366 1.45E-96 T 11-10-2018 AMK58_03925 13f31c5aa5f9b19cc12f57250eaae98f 379 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 9 366 31.762 T 11-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMK58_03925 13f31c5aa5f9b19cc12f57250eaae98f 379 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 5 361 6.0E-80 T 11-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMK58_03925 13f31c5aa5f9b19cc12f57250eaae98f 379 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 9 144 6.1E-28 T 11-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMK58_03925 13f31c5aa5f9b19cc12f57250eaae98f 379 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 191 357 6.3E-35 T 11-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 AMK58_03925 13f31c5aa5f9b19cc12f57250eaae98f 379 Gene3D G3DSA:3.40.50.2000 10 356 7.5E-95 T 11-10-2018 AMK58_08085 0478819d719bbf864e58444f2f78c066 540 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 372 535 1.3E-51 T 11-10-2018 IPR000160 GGDEF domain AMK58_08085 0478819d719bbf864e58444f2f78c066 540 Pfam PF00990 Diguanylate cyclase, GGDEF domain 375 532 6.5E-46 T 11-10-2018 IPR000160 GGDEF domain AMK58_08085 0478819d719bbf864e58444f2f78c066 540 SUPERFAMILY SSF55785 119 246 1.26E-17 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_08085 0478819d719bbf864e58444f2f78c066 540 SMART SM00091 20 86 1.2 T 11-10-2018 IPR000014 PAS domain AMK58_08085 0478819d719bbf864e58444f2f78c066 540 SMART SM00091 134 201 4.4E-5 T 11-10-2018 IPR000014 PAS domain AMK58_08085 0478819d719bbf864e58444f2f78c066 540 SMART SM00091 253 321 9.0E-9 T 11-10-2018 IPR000014 PAS domain AMK58_08085 0478819d719bbf864e58444f2f78c066 540 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 139 247 2.5E-7 T 11-10-2018 IPR000014 PAS domain AMK58_08085 0478819d719bbf864e58444f2f78c066 540 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 251 371 4.9E-19 T 11-10-2018 IPR000014 PAS domain AMK58_08085 0478819d719bbf864e58444f2f78c066 540 SMART SM00086 324 364 15.0 T 11-10-2018 IPR001610 PAC motif AMK58_08085 0478819d719bbf864e58444f2f78c066 540 SMART SM00086 81 122 8.1 T 11-10-2018 IPR001610 PAC motif AMK58_08085 0478819d719bbf864e58444f2f78c066 540 Pfam PF13188 PAS domain 24 71 7.6E-4 T 11-10-2018 IPR000014 PAS domain AMK58_08085 0478819d719bbf864e58444f2f78c066 540 Gene3D G3DSA:3.30.450.20 136 246 9.9E-14 T 11-10-2018 AMK58_08085 0478819d719bbf864e58444f2f78c066 540 Gene3D G3DSA:3.30.70.270 373 538 3.8E-58 T 11-10-2018 AMK58_08085 0478819d719bbf864e58444f2f78c066 540 SUPERFAMILY SSF55073 380 538 1.02E-49 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_08085 0478819d719bbf864e58444f2f78c066 540 SMART SM00267 364 536 1.5E-62 T 11-10-2018 IPR000160 GGDEF domain AMK58_08085 0478819d719bbf864e58444f2f78c066 540 SUPERFAMILY SSF55785 251 345 1.54E-17 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_08085 0478819d719bbf864e58444f2f78c066 540 Pfam PF08448 PAS fold 140 247 5.0E-10 T 11-10-2018 IPR013656 PAS fold-4 AMK58_08085 0478819d719bbf864e58444f2f78c066 540 SUPERFAMILY SSF55785 31 130 3.07E-11 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_08085 0478819d719bbf864e58444f2f78c066 540 Gene3D G3DSA:3.30.450.20 256 372 1.9E-19 T 11-10-2018 AMK58_08085 0478819d719bbf864e58444f2f78c066 540 Pfam PF00989 PAS fold 253 343 1.4E-11 T 11-10-2018 IPR013767 PAS fold GO:0006355 AMK58_08085 0478819d719bbf864e58444f2f78c066 540 Gene3D G3DSA:3.30.450.20 20 133 7.2E-10 T 11-10-2018 AMK58_06595 99d072c9e0a7aa70e85b167de2ae2156 284 Gene3D G3DSA:3.40.50.300 19 254 3.3E-62 T 11-10-2018 AMK58_06595 99d072c9e0a7aa70e85b167de2ae2156 284 SUPERFAMILY SSF52540 21 252 1.22E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_06595 99d072c9e0a7aa70e85b167de2ae2156 284 Pfam PF00005 ABC transporter 44 182 5.1E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_06595 99d072c9e0a7aa70e85b167de2ae2156 284 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_06595 99d072c9e0a7aa70e85b167de2ae2156 284 SMART SM00382 52 232 1.7E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_09195 594ca1bb14cda25b92aa0a7992436d70 146 SUPERFAMILY SSF55729 14 141 4.22E-24 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_09195 594ca1bb14cda25b92aa0a7992436d70 146 Pfam PF00583 Acetyltransferase (GNAT) family 45 119 1.4E-7 T 11-10-2018 IPR000182 GNAT domain AMK58_09195 594ca1bb14cda25b92aa0a7992436d70 146 Gene3D G3DSA:3.40.630.30 38 141 1.0E-23 T 11-10-2018 AMK58_06320 d5e5398555c660a7503850287dd437e4 406 Pfam PF02684 Lipid-A-disaccharide synthetase 6 353 1.0E-101 T 11-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 AMK58_06320 d5e5398555c660a7503850287dd437e4 406 SUPERFAMILY SSF53756 6 359 8.79E-28 T 11-10-2018 AMK58_06320 d5e5398555c660a7503850287dd437e4 406 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 3 381 34.822 T 11-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 AMK58_06320 d5e5398555c660a7503850287dd437e4 406 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 6 381 8.3E-85 T 11-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 AMK58_26410 66a46a3da164e6e65f7df8fe8ffe2a52 720 SUPERFAMILY SSF58104 391 713 2.75E-60 T 11-10-2018 AMK58_26410 66a46a3da164e6e65f7df8fe8ffe2a52 720 SMART SM00304 371 423 3.9E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_26410 66a46a3da164e6e65f7df8fe8ffe2a52 720 SMART SM00283 460 714 3.0E-43 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_26410 66a46a3da164e6e65f7df8fe8ffe2a52 720 Pfam PF00672 HAMP domain 371 418 1.7E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_26410 66a46a3da164e6e65f7df8fe8ffe2a52 720 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 238 253 5.7E-20 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_26410 66a46a3da164e6e65f7df8fe8ffe2a52 720 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 481 510 5.7E-20 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_26410 66a46a3da164e6e65f7df8fe8ffe2a52 720 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 587 616 5.7E-20 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_26410 66a46a3da164e6e65f7df8fe8ffe2a52 720 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 558 585 5.7E-20 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_26410 66a46a3da164e6e65f7df8fe8ffe2a52 720 Gene3D G3DSA:1.20.1480.50 332 427 2.8E-11 T 11-10-2018 AMK58_26410 66a46a3da164e6e65f7df8fe8ffe2a52 720 Gene3D G3DSA:1.10.287.950 428 717 5.0E-52 T 11-10-2018 AMK58_26410 66a46a3da164e6e65f7df8fe8ffe2a52 720 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 532 684 3.6E-30 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_11910 5d86f4eb6cc0fa35328925d41fa9c952 246 Gene3D G3DSA:1.20.1080.10 1 232 3.1E-88 T 11-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 AMK58_11910 5d86f4eb6cc0fa35328925d41fa9c952 246 Hamap MF_01146 Aquaporin Z [aqpZ]. 4 232 35.464 T 11-10-2018 IPR023743 Aquaporin Z GO:0006833|GO:0015250|GO:0016021|GO:0055085 AMK58_11910 5d86f4eb6cc0fa35328925d41fa9c952 246 ProSitePatterns PS00221 MIP family signature. 63 71 - T 11-10-2018 IPR022357 Major intrinsic protein, conserved site Reactome: R-HSA-432047 AMK58_11910 5d86f4eb6cc0fa35328925d41fa9c952 246 TIGRFAM TIGR00861 MIP: MIP family channel proteins 9 225 4.6E-64 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 AMK58_11910 5d86f4eb6cc0fa35328925d41fa9c952 246 Pfam PF00230 Major intrinsic protein 3 225 3.0E-54 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 AMK58_11910 5d86f4eb6cc0fa35328925d41fa9c952 246 SUPERFAMILY SSF81338 4 228 1.7E-70 T 11-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 AMK58_11910 5d86f4eb6cc0fa35328925d41fa9c952 246 PRINTS PR00783 Major intrinsic protein family signature 5 24 1.1E-53 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 AMK58_11910 5d86f4eb6cc0fa35328925d41fa9c952 246 PRINTS PR00783 Major intrinsic protein family signature 169 191 1.1E-53 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 AMK58_11910 5d86f4eb6cc0fa35328925d41fa9c952 246 PRINTS PR00783 Major intrinsic protein family signature 82 101 1.1E-53 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 AMK58_11910 5d86f4eb6cc0fa35328925d41fa9c952 246 PRINTS PR00783 Major intrinsic protein family signature 208 228 1.1E-53 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 AMK58_11910 5d86f4eb6cc0fa35328925d41fa9c952 246 PRINTS PR00783 Major intrinsic protein family signature 45 69 1.1E-53 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 AMK58_11910 5d86f4eb6cc0fa35328925d41fa9c952 246 PRINTS PR00783 Major intrinsic protein family signature 139 157 1.1E-53 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 AMK58_20620 4816e2c2997aabb7b630db8029691257 566 Gene3D G3DSA:1.20.1530.20 3 387 2.8E-82 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily AMK58_20620 4816e2c2997aabb7b630db8029691257 566 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 14 285 5.8E-77 T 11-10-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 AMK58_20620 4816e2c2997aabb7b630db8029691257 566 SUPERFAMILY SSF51735 401 544 1.53E-33 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_20620 4816e2c2997aabb7b630db8029691257 566 Gene3D G3DSA:3.40.50.720 402 562 5.7E-40 T 11-10-2018 AMK58_20620 4816e2c2997aabb7b630db8029691257 566 Pfam PF02254 TrkA-N domain 405 518 3.9E-24 T 11-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 AMK58_20620 4816e2c2997aabb7b630db8029691257 566 Pfam PF00999 Sodium/hydrogen exchanger family 11 373 2.2E-66 T 11-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AMK58_23240 3f8f7d116e41c0aa10cf008863b37425 377 SUPERFAMILY SSF47203 226 376 2.58E-57 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMK58_23240 3f8f7d116e41c0aa10cf008863b37425 377 Gene3D G3DSA:1.10.540.10 1 118 2.8E-46 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMK58_23240 3f8f7d116e41c0aa10cf008863b37425 377 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 122 134 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMK58_23240 3f8f7d116e41c0aa10cf008863b37425 377 Gene3D G3DSA:1.20.140.10 233 377 1.3E-56 T 11-10-2018 AMK58_23240 3f8f7d116e41c0aa10cf008863b37425 377 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 4 116 1.5E-37 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMK58_23240 3f8f7d116e41c0aa10cf008863b37425 377 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 334 353 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMK58_23240 3f8f7d116e41c0aa10cf008863b37425 377 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 120 215 8.0E-30 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMK58_23240 3f8f7d116e41c0aa10cf008863b37425 377 SUPERFAMILY SSF56645 2 240 1.01E-85 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMK58_23240 3f8f7d116e41c0aa10cf008863b37425 377 Gene3D G3DSA:2.40.110.10 119 232 4.1E-44 T 11-10-2018 AMK58_23240 3f8f7d116e41c0aa10cf008863b37425 377 PIRSF PIRSF016578 1 376 3.1E-22 T 11-10-2018 AMK58_23240 3f8f7d116e41c0aa10cf008863b37425 377 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 227 375 1.7E-51 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMK58_19645 4739c60be8a1d0a9bfcaca822604dbfa 756 Gene3D G3DSA:2.120.10.90 518 725 2.7E-14 T 11-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal AMK58_19645 4739c60be8a1d0a9bfcaca822604dbfa 756 Gene3D G3DSA:3.30.1360.40 258 354 1.7E-178 T 11-10-2018 AMK58_19645 4739c60be8a1d0a9bfcaca822604dbfa 756 Gene3D G3DSA:3.90.199.10 38 506 1.7E-178 T 11-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 AMK58_19645 4739c60be8a1d0a9bfcaca822604dbfa 756 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 10 756 32.113 T 11-10-2018 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMK58_19645 4739c60be8a1d0a9bfcaca822604dbfa 756 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 16 755 4.5E-257 T 11-10-2018 AMK58_19645 4739c60be8a1d0a9bfcaca822604dbfa 756 SUPERFAMILY SSF101904 520 754 5.49E-47 T 11-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal AMK58_19645 4739c60be8a1d0a9bfcaca822604dbfa 756 SUPERFAMILY SSF56719 37 506 1.7E-150 T 11-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AMK58_19645 4739c60be8a1d0a9bfcaca822604dbfa 756 Gene3D G3DSA:1.10.268.10 392 477 1.7E-178 T 11-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AMK58_19645 4739c60be8a1d0a9bfcaca822604dbfa 756 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 622 649 0.36 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMK58_19645 4739c60be8a1d0a9bfcaca822604dbfa 756 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 569 607 0.91 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMK58_19645 4739c60be8a1d0a9bfcaca822604dbfa 756 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 667 703 1.1E-4 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMK58_19645 4739c60be8a1d0a9bfcaca822604dbfa 756 SMART SM00434 17 484 8.5E-216 T 11-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMK58_19645 4739c60be8a1d0a9bfcaca822604dbfa 756 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 38 479 9.4E-136 T 11-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMK58_11290 c397c70291c2c0bb42feda45975b478e 69 SUPERFAMILY SSF89807 3 68 2.22E-25 T 11-10-2018 IPR036694 Dodecin-like superfamily AMK58_11290 c397c70291c2c0bb42feda45975b478e 69 Gene3D G3DSA:3.30.1660.10 2 69 7.5E-34 T 11-10-2018 IPR025543 Dodecin-like AMK58_11290 c397c70291c2c0bb42feda45975b478e 69 Pfam PF07311 Dodecin 5 68 1.6E-29 T 11-10-2018 IPR009923 Dodecin AMK58_29275 eb6aeda933e9eddcc7181d98430d738c 207 Gene3D G3DSA:3.40.50.150 13 197 5.4E-27 T 11-10-2018 AMK58_29275 eb6aeda933e9eddcc7181d98430d738c 207 Pfam PF05050 Methyltransferase FkbM domain 33 198 7.6E-17 T 11-10-2018 IPR006342 Methyltransferase FkbM AMK58_29275 eb6aeda933e9eddcc7181d98430d738c 207 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 32 176 4.0E-24 T 11-10-2018 IPR006342 Methyltransferase FkbM AMK58_29275 eb6aeda933e9eddcc7181d98430d738c 207 SUPERFAMILY SSF53335 18 162 9.24E-30 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_28740 eb6aeda933e9eddcc7181d98430d738c 207 Gene3D G3DSA:3.40.50.150 13 197 5.4E-27 T 11-10-2018 AMK58_28740 eb6aeda933e9eddcc7181d98430d738c 207 Pfam PF05050 Methyltransferase FkbM domain 33 198 7.6E-17 T 11-10-2018 IPR006342 Methyltransferase FkbM AMK58_28740 eb6aeda933e9eddcc7181d98430d738c 207 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 32 176 4.0E-24 T 11-10-2018 IPR006342 Methyltransferase FkbM AMK58_28740 eb6aeda933e9eddcc7181d98430d738c 207 SUPERFAMILY SSF53335 18 162 9.24E-30 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_03855 04e6d48942b93553a79adc0323dfcaaf 556 Gene3D G3DSA:3.40.50.300 274 554 1.2E-50 T 11-10-2018 AMK58_03855 04e6d48942b93553a79adc0323dfcaaf 556 Gene3D G3DSA:3.40.50.300 1 273 8.9E-45 T 11-10-2018 AMK58_03855 04e6d48942b93553a79adc0323dfcaaf 556 SUPERFAMILY SSF52540 3 499 1.75E-24 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_03855 04e6d48942b93553a79adc0323dfcaaf 556 SUPERFAMILY SSF52540 1 217 3.89E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_03855 04e6d48942b93553a79adc0323dfcaaf 556 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 552 2.3E-139 T 11-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 AMK58_03855 04e6d48942b93553a79adc0323dfcaaf 556 Pfam PF02463 RecF/RecN/SMC N terminal domain 16 509 6.6E-14 T 11-10-2018 IPR003395 RecF/RecN/SMC, N-terminal AMK58_03855 04e6d48942b93553a79adc0323dfcaaf 556 PIRSF PIRSF003128 1 555 1.6E-152 T 11-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 AMK58_08065 085c643498db00d421948e8c8e470c4b 265 Gene3D G3DSA:3.40.190.10 28 247 1.1E-58 T 11-10-2018 AMK58_08065 085c643498db00d421948e8c8e470c4b 265 SUPERFAMILY SSF53850 37 256 1.66E-46 T 11-10-2018 AMK58_08065 085c643498db00d421948e8c8e470c4b 265 SMART SM00062 36 260 2.6E-38 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMK58_08065 085c643498db00d421948e8c8e470c4b 265 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 37 255 1.1E-39 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMK58_08065 085c643498db00d421948e8c8e470c4b 265 Gene3D G3DSA:3.40.190.10 124 214 1.1E-58 T 11-10-2018 AMK58_17090 743e3d243233aded0e629994b0566088 314 Pfam PF03466 LysR substrate binding domain 86 288 3.4E-35 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_17090 743e3d243233aded0e629994b0566088 314 Gene3D G3DSA:3.40.190.290 90 294 3.4E-37 T 11-10-2018 AMK58_17090 743e3d243233aded0e629994b0566088 314 SUPERFAMILY SSF46785 3 102 2.01E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_17090 743e3d243233aded0e629994b0566088 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 38 8.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_17090 743e3d243233aded0e629994b0566088 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 17 28 8.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_17090 743e3d243233aded0e629994b0566088 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 38 49 8.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_17090 743e3d243233aded0e629994b0566088 314 SUPERFAMILY SSF53850 86 290 6.36E-35 T 11-10-2018 AMK58_17090 743e3d243233aded0e629994b0566088 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 2 60 1.9E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_17090 743e3d243233aded0e629994b0566088 314 Gene3D G3DSA:1.10.10.10 1 84 7.6E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_02315 b048c11c609f3211793a51d78722b2a8 986 Gene3D G3DSA:3.40.50.2300 721 849 4.5E-35 T 11-10-2018 AMK58_02315 b048c11c609f3211793a51d78722b2a8 986 SMART SM00448 732 847 2.1E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_02315 b048c11c609f3211793a51d78722b2a8 986 SMART SM00448 34 157 0.033 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_02315 b048c11c609f3211793a51d78722b2a8 986 SUPERFAMILY SSF52172 33 172 2.42E-12 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_02315 b048c11c609f3211793a51d78722b2a8 986 SUPERFAMILY SSF47384 302 383 2.16E-21 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_02315 b048c11c609f3211793a51d78722b2a8 986 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 428 550 5.5E-29 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_02315 b048c11c609f3211793a51d78722b2a8 986 Pfam PF00512 His Kinase A (phospho-acceptor) domain 316 381 1.4E-19 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_02315 b048c11c609f3211793a51d78722b2a8 986 SUPERFAMILY SSF55785 175 294 2.58E-22 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_02315 b048c11c609f3211793a51d78722b2a8 986 SUPERFAMILY SSF55874 370 549 3.14E-45 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_02315 b048c11c609f3211793a51d78722b2a8 986 Pfam PF00989 PAS fold 185 283 3.5E-11 T 11-10-2018 IPR013767 PAS fold GO:0006355 AMK58_02315 b048c11c609f3211793a51d78722b2a8 986 Pfam PF01627 Hpt domain 895 972 2.0E-8 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMK58_02315 b048c11c609f3211793a51d78722b2a8 986 Pfam PF00072 Response regulator receiver domain 36 144 3.8E-5 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_02315 b048c11c609f3211793a51d78722b2a8 986 Pfam PF00072 Response regulator receiver domain 734 847 1.7E-21 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_02315 b048c11c609f3211793a51d78722b2a8 986 PRINTS PR00344 Bacterial sensor protein C-terminal signature 512 530 6.8E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_02315 b048c11c609f3211793a51d78722b2a8 986 PRINTS PR00344 Bacterial sensor protein C-terminal signature 477 491 6.8E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_02315 b048c11c609f3211793a51d78722b2a8 986 PRINTS PR00344 Bacterial sensor protein C-terminal signature 495 505 6.8E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_02315 b048c11c609f3211793a51d78722b2a8 986 PRINTS PR00344 Bacterial sensor protein C-terminal signature 536 549 6.8E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_02315 b048c11c609f3211793a51d78722b2a8 986 Gene3D G3DSA:1.20.120.160 871 983 3.0E-18 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMK58_02315 b048c11c609f3211793a51d78722b2a8 986 Gene3D G3DSA:1.10.287.130 294 379 2.1E-27 T 11-10-2018 AMK58_02315 b048c11c609f3211793a51d78722b2a8 986 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 181 301 3.2E-18 T 11-10-2018 IPR000014 PAS domain AMK58_02315 b048c11c609f3211793a51d78722b2a8 986 SMART SM00091 185 251 4.4E-8 T 11-10-2018 IPR000014 PAS domain AMK58_02315 b048c11c609f3211793a51d78722b2a8 986 SMART SM00387 428 552 2.3E-37 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_02315 b048c11c609f3211793a51d78722b2a8 986 SMART SM00388 316 381 2.1E-25 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_02315 b048c11c609f3211793a51d78722b2a8 986 Gene3D G3DSA:3.40.50.2300 21 172 3.5E-11 T 11-10-2018 AMK58_02315 b048c11c609f3211793a51d78722b2a8 986 SMART SM00086 256 296 3.4E-5 T 11-10-2018 IPR001610 PAC motif AMK58_02315 b048c11c609f3211793a51d78722b2a8 986 Gene3D G3DSA:3.30.450.20 173 293 3.0E-22 T 11-10-2018 AMK58_02315 b048c11c609f3211793a51d78722b2a8 986 SUPERFAMILY SSF47226 830 975 7.85E-18 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMK58_02315 b048c11c609f3211793a51d78722b2a8 986 SUPERFAMILY SSF52172 731 852 8.68E-33 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_02315 b048c11c609f3211793a51d78722b2a8 986 Gene3D G3DSA:3.30.565.10 380 554 1.6E-50 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_12570 334a6ae136cafc6d55394bb1f7fccc61 304 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 126 284 5.6E-44 T 11-10-2018 IPR000160 GGDEF domain AMK58_12570 334a6ae136cafc6d55394bb1f7fccc61 304 Pfam PF00990 Diguanylate cyclase, GGDEF domain 127 282 2.6E-38 T 11-10-2018 IPR000160 GGDEF domain AMK58_12570 334a6ae136cafc6d55394bb1f7fccc61 304 SUPERFAMILY SSF55073 130 286 1.57E-42 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_12570 334a6ae136cafc6d55394bb1f7fccc61 304 SMART SM00267 113 286 4.8E-45 T 11-10-2018 IPR000160 GGDEF domain AMK58_12570 334a6ae136cafc6d55394bb1f7fccc61 304 Gene3D G3DSA:3.30.70.270 127 291 9.0E-49 T 11-10-2018 AMK58_12570 334a6ae136cafc6d55394bb1f7fccc61 304 Gene3D G3DSA:1.20.120.30 12 119 2.1E-6 T 11-10-2018 AMK58_09035 b60915f37789ba56d9feb669c8803ffd 485 PRINTS PR00147 DNA photolyase signature 144 160 4.4E-24 T 11-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 AMK58_09035 b60915f37789ba56d9feb669c8803ffd 485 PRINTS PR00147 DNA photolyase signature 387 401 4.4E-24 T 11-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 AMK58_09035 b60915f37789ba56d9feb669c8803ffd 485 PRINTS PR00147 DNA photolyase signature 328 344 4.4E-24 T 11-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 AMK58_09035 b60915f37789ba56d9feb669c8803ffd 485 PRINTS PR00147 DNA photolyase signature 348 366 4.4E-24 T 11-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 AMK58_09035 b60915f37789ba56d9feb669c8803ffd 485 SUPERFAMILY SSF48173 196 482 1.7E-115 T 11-10-2018 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily Reactome: R-HSA-400253 AMK58_09035 b60915f37789ba56d9feb669c8803ffd 485 Pfam PF03441 FAD binding domain of DNA photolyase 279 478 7.9E-90 T 11-10-2018 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-400253 AMK58_09035 b60915f37789ba56d9feb669c8803ffd 485 ProSitePatterns PS00394 DNA photolyases class 1 signature 1. 328 340 - T 11-10-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal AMK58_09035 b60915f37789ba56d9feb669c8803ffd 485 Pfam PF00875 DNA photolyase 9 168 9.8E-52 T 11-10-2018 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-400253 AMK58_09035 b60915f37789ba56d9feb669c8803ffd 485 Gene3D G3DSA:3.40.50.620 9 209 2.9E-100 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_09035 b60915f37789ba56d9feb669c8803ffd 485 SUPERFAMILY SSF52425 7 211 4.84E-60 T 11-10-2018 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily Reactome: R-HSA-400253 AMK58_09035 b60915f37789ba56d9feb669c8803ffd 485 Gene3D G3DSA:1.10.579.10 297 484 3.7E-87 T 11-10-2018 AMK58_09035 b60915f37789ba56d9feb669c8803ffd 485 Gene3D G3DSA:1.25.40.80 133 293 2.9E-100 T 11-10-2018 AMK58_21075 3dca5074ace937dfa69bdd4413d09690 298 Pfam PF03968 OstA-like protein 141 247 1.5E-5 T 11-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal AMK58_21075 3dca5074ace937dfa69bdd4413d09690 298 Gene3D G3DSA:2.60.450.10 132 264 5.9E-6 T 11-10-2018 AMK58_20480 1956ebda98b9bb25ca8b8b56a137a20b 717 Gene3D G3DSA:3.40.50.2300 577 714 1.6E-23 T 11-10-2018 AMK58_20480 1956ebda98b9bb25ca8b8b56a137a20b 717 Gene3D G3DSA:1.10.287.130 304 406 8.4E-11 T 11-10-2018 AMK58_20480 1956ebda98b9bb25ca8b8b56a137a20b 717 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 453 562 3.4E-16 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_20480 1956ebda98b9bb25ca8b8b56a137a20b 717 SUPERFAMILY SSF47384 326 408 4.32E-10 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_20480 1956ebda98b9bb25ca8b8b56a137a20b 717 SMART SM00448 585 699 2.2E-21 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_20480 1956ebda98b9bb25ca8b8b56a137a20b 717 SUPERFAMILY SSF55874 399 564 6.42E-36 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_20480 1956ebda98b9bb25ca8b8b56a137a20b 717 PRINTS PR00344 Bacterial sensor protein C-terminal signature 523 541 2.0E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_20480 1956ebda98b9bb25ca8b8b56a137a20b 717 PRINTS PR00344 Bacterial sensor protein C-terminal signature 506 516 2.0E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_20480 1956ebda98b9bb25ca8b8b56a137a20b 717 PRINTS PR00344 Bacterial sensor protein C-terminal signature 547 560 2.0E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_20480 1956ebda98b9bb25ca8b8b56a137a20b 717 PRINTS PR00344 Bacterial sensor protein C-terminal signature 488 502 2.0E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_20480 1956ebda98b9bb25ca8b8b56a137a20b 717 Pfam PF00072 Response regulator receiver domain 587 699 1.1E-14 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_20480 1956ebda98b9bb25ca8b8b56a137a20b 717 SUPERFAMILY SSF52172 587 703 3.56E-26 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_20480 1956ebda98b9bb25ca8b8b56a137a20b 717 SMART SM00388 343 408 1.8E-6 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_20480 1956ebda98b9bb25ca8b8b56a137a20b 717 Pfam PF00512 His Kinase A (phospho-acceptor) domain 343 408 8.2E-7 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_20480 1956ebda98b9bb25ca8b8b56a137a20b 717 Gene3D G3DSA:3.30.565.10 408 568 7.4E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_20480 1956ebda98b9bb25ca8b8b56a137a20b 717 SMART SM00387 452 563 9.5E-23 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_10015 1247e0dde8509d59bc63059f09f27f5c 889 SMART SM00863 654 705 1.1E-20 T 11-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 AMK58_10015 1247e0dde8509d59bc63059f09f27f5c 889 Gene3D G3DSA:3.30.54.20 625 686 2.5E-46 T 11-10-2018 AMK58_10015 1247e0dde8509d59bc63059f09f27f5c 889 SUPERFAMILY SSF55681 3 245 2.46E-109 T 11-10-2018 AMK58_10015 1247e0dde8509d59bc63059f09f27f5c 889 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 6 866 2.8E-295 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AMK58_10015 1247e0dde8509d59bc63059f09f27f5c 889 Gene3D G3DSA:3.10.310.40 774 885 2.2E-28 T 11-10-2018 AMK58_10015 1247e0dde8509d59bc63059f09f27f5c 889 SUPERFAMILY SSF101353 246 461 4.18E-59 T 11-10-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 AMK58_10015 1247e0dde8509d59bc63059f09f27f5c 889 Gene3D G3DSA:3.30.980.10 564 706 2.5E-46 T 11-10-2018 AMK58_10015 1247e0dde8509d59bc63059f09f27f5c 889 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 887 198.364 T 11-10-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 AMK58_10015 1247e0dde8509d59bc63059f09f27f5c 889 Gene3D G3DSA:3.30.930.10 1 241 1.7E-109 T 11-10-2018 AMK58_10015 1247e0dde8509d59bc63059f09f27f5c 889 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 654 705 4.7E-17 T 11-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 AMK58_10015 1247e0dde8509d59bc63059f09f27f5c 889 Gene3D G3DSA:2.40.30.130 459 553 7.0E-10 T 11-10-2018 AMK58_10015 1247e0dde8509d59bc63059f09f27f5c 889 Pfam PF01411 tRNA synthetases class II (A) 6 557 1.0E-220 T 11-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 AMK58_10015 1247e0dde8509d59bc63059f09f27f5c 889 SUPERFAMILY SSF55186 553 721 6.8E-47 T 11-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 AMK58_10015 1247e0dde8509d59bc63059f09f27f5c 889 PRINTS PR00980 Alanyl-tRNA synthetase signature 298 311 1.3E-32 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AMK58_10015 1247e0dde8509d59bc63059f09f27f5c 889 PRINTS PR00980 Alanyl-tRNA synthetase signature 75 86 1.3E-32 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AMK58_10015 1247e0dde8509d59bc63059f09f27f5c 889 PRINTS PR00980 Alanyl-tRNA synthetase signature 199 210 1.3E-32 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AMK58_10015 1247e0dde8509d59bc63059f09f27f5c 889 PRINTS PR00980 Alanyl-tRNA synthetase signature 226 239 1.3E-32 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AMK58_10015 1247e0dde8509d59bc63059f09f27f5c 889 PRINTS PR00980 Alanyl-tRNA synthetase signature 274 290 1.3E-32 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AMK58_10015 1247e0dde8509d59bc63059f09f27f5c 889 Pfam PF02272 DHHA1 domain 742 883 1.6E-20 T 11-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 AMK58_10015 1247e0dde8509d59bc63059f09f27f5c 889 SUPERFAMILY SSF50447 453 553 9.27E-21 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMK58_02680 0184d236994d97c38e6b557acc63f0ba 593 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 9 593 1.5E-295 T 11-10-2018 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMK58_02680 0184d236994d97c38e6b557acc63f0ba 593 Gene3D G3DSA:3.90.700.10 248 351 2.9E-169 T 11-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMK58_02680 0184d236994d97c38e6b557acc63f0ba 593 PIRSF PIRSF000171 1 583 3.9E-41 T 11-10-2018 AMK58_02680 0184d236994d97c38e6b557acc63f0ba 593 Pfam PF02910 Fumarate reductase flavoprotein C-term 460 593 9.1E-42 T 11-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMK58_02680 0184d236994d97c38e6b557acc63f0ba 593 SUPERFAMILY SSF46977 451 593 1.83E-49 T 11-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMK58_02680 0184d236994d97c38e6b557acc63f0ba 593 Gene3D G3DSA:3.50.50.60 12 417 2.9E-169 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_02680 0184d236994d97c38e6b557acc63f0ba 593 SUPERFAMILY SSF56425 238 356 2.84E-42 T 11-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMK58_02680 0184d236994d97c38e6b557acc63f0ba 593 Pfam PF00890 FAD binding domain 12 406 4.6E-125 T 11-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMK58_02680 0184d236994d97c38e6b557acc63f0ba 593 SUPERFAMILY SSF51905 4 428 5.52E-81 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_02680 0184d236994d97c38e6b557acc63f0ba 593 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 46 55 - T 11-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMK58_02680 0184d236994d97c38e6b557acc63f0ba 593 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 12 593 3.2E-246 T 11-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMK58_02680 0184d236994d97c38e6b557acc63f0ba 593 Gene3D G3DSA:1.20.58.100 432 544 9.2E-37 T 11-10-2018 AMK58_02680 0184d236994d97c38e6b557acc63f0ba 593 Gene3D G3DSA:4.10.80.40 545 593 2.1E-9 T 11-10-2018 AMK58_13135 afedebc7fc8ade2a290c830d3c2f4ade 382 SUPERFAMILY SSF46626 305 378 1.87E-7 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_13135 afedebc7fc8ade2a290c830d3c2f4ade 382 SUPERFAMILY SSF48695 16 181 5.24E-53 T 11-10-2018 IPR036280 Multiheme cytochrome superfamily AMK58_13135 afedebc7fc8ade2a290c830d3c2f4ade 382 PIRSF PIRSF000014 6 382 1.5E-130 T 11-10-2018 IPR009154 Membrane-bound tetrahaem cytochrome TorC/YecK GO:0005506|GO:0009055|GO:0009276|GO:0016021|GO:0020037 AMK58_13135 afedebc7fc8ade2a290c830d3c2f4ade 382 Gene3D G3DSA:1.10.3820.10 11 184 1.4E-38 T 11-10-2018 IPR038266 NapC/NirT cytochrome c superfamily AMK58_13135 afedebc7fc8ade2a290c830d3c2f4ade 382 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 16 180 7.3E-73 T 11-10-2018 IPR005126 NapC/NirT cytochrome c, N-terminal AMK58_25545 14d7bb7280a0b6c1837ad8e74c99ae0e 240 Gene3D G3DSA:3.40.50.720 1 238 8.0E-58 T 11-10-2018 AMK58_25545 14d7bb7280a0b6c1837ad8e74c99ae0e 240 Pfam PF00106 short chain dehydrogenase 5 192 1.1E-43 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_25545 14d7bb7280a0b6c1837ad8e74c99ae0e 240 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4 174 0.0045 T 11-10-2018 AMK58_25545 14d7bb7280a0b6c1837ad8e74c99ae0e 240 SUPERFAMILY SSF51735 1 218 9.77E-57 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_25545 14d7bb7280a0b6c1837ad8e74c99ae0e 240 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 5.3E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_25545 14d7bb7280a0b6c1837ad8e74c99ae0e 240 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 5.3E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_25545 14d7bb7280a0b6c1837ad8e74c99ae0e 240 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 5.3E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_25545 14d7bb7280a0b6c1837ad8e74c99ae0e 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 7.3E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_25545 14d7bb7280a0b6c1837ad8e74c99ae0e 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 7.3E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_25545 14d7bb7280a0b6c1837ad8e74c99ae0e 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 7.3E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_25545 14d7bb7280a0b6c1837ad8e74c99ae0e 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 7.3E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_25545 14d7bb7280a0b6c1837ad8e74c99ae0e 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 7.3E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_17410 f4a80e1ba219f6ceb78ded0cd59119d0 380 Gene3D G3DSA:1.10.132.120 117 356 2.2E-95 T 11-10-2018 AMK58_17410 f4a80e1ba219f6ceb78ded0cd59119d0 380 SUPERFAMILY SSF56349 105 328 4.47E-71 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMK58_17410 f4a80e1ba219f6ceb78ded0cd59119d0 380 Pfam PF01028 Eukaryotic DNA topoisomerase I, catalytic core 112 318 1.8E-32 T 11-10-2018 IPR013500 DNA topoisomerase I, catalytic core, eukaryotic-type GO:0003677|GO:0003917|GO:0006265 AMK58_17410 f4a80e1ba219f6ceb78ded0cd59119d0 380 Gene3D G3DSA:3.30.66.10 31 115 1.4E-33 T 11-10-2018 IPR035447 DNA topoisomerase I, N-terminal AMK58_17410 f4a80e1ba219f6ceb78ded0cd59119d0 380 Gene3D G3DSA:3.90.15.10 140 259 2.2E-95 T 11-10-2018 IPR014711 DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type GO:0003677|GO:0003917|GO:0006265 AMK58_17410 f4a80e1ba219f6ceb78ded0cd59119d0 380 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 149 168 6.3E-7 T 11-10-2018 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 AMK58_17410 f4a80e1ba219f6ceb78ded0cd59119d0 380 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 193 209 6.3E-7 T 11-10-2018 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 AMK58_17410 f4a80e1ba219f6ceb78ded0cd59119d0 380 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 309 320 6.3E-7 T 11-10-2018 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 AMK58_17410 f4a80e1ba219f6ceb78ded0cd59119d0 380 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 258 272 6.3E-7 T 11-10-2018 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 AMK58_17410 f4a80e1ba219f6ceb78ded0cd59119d0 380 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 172 186 6.3E-7 T 11-10-2018 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 AMK58_17410 f4a80e1ba219f6ceb78ded0cd59119d0 380 SUPERFAMILY SSF55869 49 109 3.66E-22 T 11-10-2018 IPR035447 DNA topoisomerase I, N-terminal AMK58_22950 4d7341cb94895947a2c5ed261f0565a5 499 Gene3D G3DSA:3.40.605.10 24 459 1.0E-157 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMK58_22950 4d7341cb94895947a2c5ed261f0565a5 499 Gene3D G3DSA:3.40.309.10 249 451 1.0E-157 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMK58_22950 4d7341cb94895947a2c5ed261f0565a5 499 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 4 482 5.1E-205 T 11-10-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642|Reactome: R-HSA-70895 AMK58_22950 4d7341cb94895947a2c5ed261f0565a5 499 Pfam PF00171 Aldehyde dehydrogenase family 18 478 4.9E-138 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMK58_22950 4d7341cb94895947a2c5ed261f0565a5 499 SUPERFAMILY SSF53720 2 482 7.59E-148 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMK58_22950 4d7341cb94895947a2c5ed261f0565a5 499 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 274 285 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AMK58_02300 6cee96595e69ffcf1c20bc517a757b13 156 Pfam PF01475 Ferric uptake regulator family 11 130 7.9E-37 T 11-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 AMK58_02300 6cee96595e69ffcf1c20bc517a757b13 156 SUPERFAMILY SSF46785 5 132 3.29E-36 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_02300 6cee96595e69ffcf1c20bc517a757b13 156 Gene3D G3DSA:1.10.10.10 1 84 1.4E-30 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_02300 6cee96595e69ffcf1c20bc517a757b13 156 Gene3D G3DSA:3.30.1490.190 86 136 4.0E-18 T 11-10-2018 AMK58_10245 db4c389b2793fc9a8883b6da2788fb87 617 Pfam PF08448 PAS fold 5 112 9.6E-9 T 11-10-2018 IPR013656 PAS fold-4 AMK58_10245 db4c389b2793fc9a8883b6da2788fb87 617 Pfam PF08448 PAS fold 131 237 1.6E-16 T 11-10-2018 IPR013656 PAS fold-4 AMK58_10245 db4c389b2793fc9a8883b6da2788fb87 617 SUPERFAMILY SSF55785 108 235 4.03E-30 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_10245 db4c389b2793fc9a8883b6da2788fb87 617 SMART SM00387 499 612 4.2E-38 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_10245 db4c389b2793fc9a8883b6da2788fb87 617 Gene3D G3DSA:3.30.450.20 114 235 8.2E-28 T 11-10-2018 AMK58_10245 db4c389b2793fc9a8883b6da2788fb87 617 SMART SM00091 249 314 0.3 T 11-10-2018 IPR000014 PAS domain AMK58_10245 db4c389b2793fc9a8883b6da2788fb87 617 SMART SM00091 1 61 0.028 T 11-10-2018 IPR000014 PAS domain AMK58_10245 db4c389b2793fc9a8883b6da2788fb87 617 SMART SM00091 123 189 1.7E-11 T 11-10-2018 IPR000014 PAS domain AMK58_10245 db4c389b2793fc9a8883b6da2788fb87 617 Gene3D G3DSA:3.30.450.20 246 363 8.9E-24 T 11-10-2018 AMK58_10245 db4c389b2793fc9a8883b6da2788fb87 617 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 499 610 1.3E-28 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_10245 db4c389b2793fc9a8883b6da2788fb87 617 Pfam PF00989 PAS fold 251 361 1.2E-7 T 11-10-2018 IPR013767 PAS fold GO:0006355 AMK58_10245 db4c389b2793fc9a8883b6da2788fb87 617 SMART SM00086 324 364 24.0 T 11-10-2018 IPR001610 PAC motif AMK58_10245 db4c389b2793fc9a8883b6da2788fb87 617 SMART SM00086 195 237 0.0015 T 11-10-2018 IPR001610 PAC motif AMK58_10245 db4c389b2793fc9a8883b6da2788fb87 617 SMART SM00086 70 111 0.62 T 11-10-2018 IPR001610 PAC motif AMK58_10245 db4c389b2793fc9a8883b6da2788fb87 617 SUPERFAMILY SSF47384 371 454 3.92E-18 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_10245 db4c389b2793fc9a8883b6da2788fb87 617 Gene3D G3DSA:3.30.565.10 452 612 6.3E-46 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_10245 db4c389b2793fc9a8883b6da2788fb87 617 Gene3D G3DSA:1.10.287.130 364 451 7.0E-23 T 11-10-2018 AMK58_10245 db4c389b2793fc9a8883b6da2788fb87 617 Gene3D G3DSA:3.30.450.20 6 113 1.4E-15 T 11-10-2018 AMK58_10245 db4c389b2793fc9a8883b6da2788fb87 617 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 119 243 1.4E-16 T 11-10-2018 IPR000014 PAS domain AMK58_10245 db4c389b2793fc9a8883b6da2788fb87 617 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 248 370 1.2E-16 T 11-10-2018 IPR000014 PAS domain AMK58_10245 db4c389b2793fc9a8883b6da2788fb87 617 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 6 118 1.7E-12 T 11-10-2018 IPR000014 PAS domain AMK58_10245 db4c389b2793fc9a8883b6da2788fb87 617 SUPERFAMILY SSF55785 6 119 6.42E-17 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_10245 db4c389b2793fc9a8883b6da2788fb87 617 SUPERFAMILY SSF55785 260 371 7.15E-18 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_10245 db4c389b2793fc9a8883b6da2788fb87 617 PRINTS PR00344 Bacterial sensor protein C-terminal signature 537 551 9.3E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_10245 db4c389b2793fc9a8883b6da2788fb87 617 PRINTS PR00344 Bacterial sensor protein C-terminal signature 572 590 9.3E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_10245 db4c389b2793fc9a8883b6da2788fb87 617 PRINTS PR00344 Bacterial sensor protein C-terminal signature 596 609 9.3E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_10245 db4c389b2793fc9a8883b6da2788fb87 617 Pfam PF00512 His Kinase A (phospho-acceptor) domain 384 453 6.7E-15 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_10245 db4c389b2793fc9a8883b6da2788fb87 617 SMART SM00388 384 453 4.4E-17 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_10245 db4c389b2793fc9a8883b6da2788fb87 617 SUPERFAMILY SSF55874 442 609 5.5E-47 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_25575 32c55de8ce1956f60b91e5599f021252 556 SUPERFAMILY SSF52467 157 357 6.98E-38 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AMK58_25575 32c55de8ce1956f60b91e5599f021252 556 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 423 442 - T 11-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 AMK58_25575 32c55de8ce1956f60b91e5599f021252 556 Gene3D G3DSA:3.40.50.970 362 554 2.5E-57 T 11-10-2018 AMK58_25575 32c55de8ce1956f60b91e5599f021252 556 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 387 533 3.1E-43 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMK58_25575 32c55de8ce1956f60b91e5599f021252 556 SUPERFAMILY SSF52518 365 542 6.61E-59 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMK58_25575 32c55de8ce1956f60b91e5599f021252 556 SUPERFAMILY SSF52518 6 182 8.16E-54 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMK58_25575 32c55de8ce1956f60b91e5599f021252 556 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 7 172 5.2E-55 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AMK58_25575 32c55de8ce1956f60b91e5599f021252 556 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 192 328 1.0E-27 T 11-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AMK58_25575 32c55de8ce1956f60b91e5599f021252 556 Gene3D G3DSA:3.40.50.1220 185 356 3.1E-36 T 11-10-2018 AMK58_25575 32c55de8ce1956f60b91e5599f021252 556 Gene3D G3DSA:3.40.50.970 1 184 4.2E-63 T 11-10-2018 AMK58_28025 8b56cb4c7ed9a254685292a0e215c3a8 110 SUPERFAMILY SSF50249 24 96 4.11E-8 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_28025 8b56cb4c7ed9a254685292a0e215c3a8 110 Pfam PF01796 DUF35 OB-fold domain, acyl-CoA-associated 30 90 4.5E-12 T 11-10-2018 IPR002878 Domain of unknown function DUF35, OB-fold, C-terminal AMK58_15065 ec8af6311e497e569d9993d739dc4926 81 Pfam PF10262 Rdx family 1 62 2.0E-22 T 11-10-2018 IPR011893 Selenoprotein, Rdx-type AMK58_15065 ec8af6311e497e569d9993d739dc4926 81 Gene3D G3DSA:3.40.30.10 1 80 9.5E-30 T 11-10-2018 AMK58_15065 ec8af6311e497e569d9993d739dc4926 81 SUPERFAMILY SSF52833 1 71 4.03E-19 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_15065 ec8af6311e497e569d9993d739dc4926 81 TIGRFAM TIGR02174 CXXU_selWTH: selT/selW/selH selenoprotein domain 3 62 5.7E-14 T 11-10-2018 IPR011893 Selenoprotein, Rdx-type AMK58_24810 e6f8d733ca66c999fd8d390025f013d3 331 SUPERFAMILY SSF46785 95 142 1.32E-6 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_24810 e6f8d733ca66c999fd8d390025f013d3 331 Gene3D G3DSA:1.10.10.10 74 159 4.3E-11 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_24810 e6f8d733ca66c999fd8d390025f013d3 331 Pfam PF13730 Helix-turn-helix domain 90 136 6.0E-11 T 11-10-2018 AMK58_12255 7c76173700aa566562c658212ef8c0f6 444 SUPERFAMILY SSF48371 11 134 1.25E-7 T 11-10-2018 IPR016024 Armadillo-type fold AMK58_12255 7c76173700aa566562c658212ef8c0f6 444 Gene3D G3DSA:1.25.10.10 12 108 3.1E-9 T 11-10-2018 IPR011989 Armadillo-like helical AMK58_12255 7c76173700aa566562c658212ef8c0f6 444 Pfam PF10098 Uncharacterised protein conserved in bacteria (DUF2336) 153 435 2.6E-76 T 11-10-2018 IPR019285 Protein of unknown function DUF2336 AMK58_22830 459fdc0447230fcdd4f97fa885e2450a 532 Gene3D G3DSA:3.30.565.10 373 529 3.4E-37 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_22830 459fdc0447230fcdd4f97fa885e2450a 532 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 411 519 6.1E-18 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_22830 459fdc0447230fcdd4f97fa885e2450a 532 PRINTS PR00344 Bacterial sensor protein C-terminal signature 452 466 9.1E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_22830 459fdc0447230fcdd4f97fa885e2450a 532 PRINTS PR00344 Bacterial sensor protein C-terminal signature 470 480 9.1E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_22830 459fdc0447230fcdd4f97fa885e2450a 532 PRINTS PR00344 Bacterial sensor protein C-terminal signature 481 499 9.1E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_22830 459fdc0447230fcdd4f97fa885e2450a 532 PRINTS PR00344 Bacterial sensor protein C-terminal signature 505 518 9.1E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_22830 459fdc0447230fcdd4f97fa885e2450a 532 Gene3D G3DSA:1.10.287.130 275 363 2.1E-16 T 11-10-2018 AMK58_22830 459fdc0447230fcdd4f97fa885e2450a 532 SUPERFAMILY SSF47384 296 363 1.43E-7 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_22830 459fdc0447230fcdd4f97fa885e2450a 532 Pfam PF00512 His Kinase A (phospho-acceptor) domain 301 364 1.1E-6 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_22830 459fdc0447230fcdd4f97fa885e2450a 532 SMART SM00388 299 368 9.3E-6 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_22830 459fdc0447230fcdd4f97fa885e2450a 532 SUPERFAMILY SSF55874 360 523 1.13E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_22830 459fdc0447230fcdd4f97fa885e2450a 532 Pfam PF05231 MASE1 2 278 3.1E-21 T 11-10-2018 IPR007895 MASE1 AMK58_22830 459fdc0447230fcdd4f97fa885e2450a 532 SMART SM00387 410 521 3.0E-28 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_12095 6e6376e6625ec5459d8507e8a56f3059 279 SUPERFAMILY SSF52402 155 278 8.37E-22 T 11-10-2018 AMK58_12095 6e6376e6625ec5459d8507e8a56f3059 279 Pfam PF00582 Universal stress protein family 155 277 1.8E-12 T 11-10-2018 IPR006016 UspA AMK58_12095 6e6376e6625ec5459d8507e8a56f3059 279 Pfam PF00582 Universal stress protein family 5 144 4.3E-5 T 11-10-2018 IPR006016 UspA AMK58_12095 6e6376e6625ec5459d8507e8a56f3059 279 SUPERFAMILY SSF52402 2 145 7.12E-13 T 11-10-2018 AMK58_12095 6e6376e6625ec5459d8507e8a56f3059 279 Gene3D G3DSA:3.40.50.12370 5 278 7.7E-35 T 11-10-2018 AMK58_12095 6e6376e6625ec5459d8507e8a56f3059 279 PRINTS PR01438 Universal stress protein signature 239 251 2.7E-8 T 11-10-2018 IPR006015 Universal stress protein A AMK58_12095 6e6376e6625ec5459d8507e8a56f3059 279 PRINTS PR01438 Universal stress protein signature 154 172 2.7E-8 T 11-10-2018 IPR006015 Universal stress protein A AMK58_12095 6e6376e6625ec5459d8507e8a56f3059 279 PRINTS PR01438 Universal stress protein signature 257 279 2.7E-8 T 11-10-2018 IPR006015 Universal stress protein A AMK58_16055 e2fdc79da928de202c8ec1d2cacb6cca 55 Pfam PF00471 Ribosomal protein L33 8 53 4.3E-15 T 11-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_16055 e2fdc79da928de202c8ec1d2cacb6cca 55 Gene3D G3DSA:2.20.28.120 1 55 1.8E-26 T 11-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_16055 e2fdc79da928de202c8ec1d2cacb6cca 55 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 55 7.3E-22 T 11-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_16055 e2fdc79da928de202c8ec1d2cacb6cca 55 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 2 53 12.873 T 11-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_16055 e2fdc79da928de202c8ec1d2cacb6cca 55 ProSitePatterns PS00582 Ribosomal protein L33 signature. 21 40 - T 11-10-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_16055 e2fdc79da928de202c8ec1d2cacb6cca 55 SUPERFAMILY SSF57829 1 53 3.97E-17 T 11-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 AMK58_11660 833165ccb20f30912cc08b6e70e2e2e7 376 SUPERFAMILY SSF88697 285 375 4.25E-27 T 11-10-2018 IPR015947 PUA-like superfamily AMK58_11660 833165ccb20f30912cc08b6e70e2e2e7 376 Pfam PF01472 PUA domain 286 359 3.6E-24 T 11-10-2018 IPR002478 PUA domain GO:0003723 AMK58_11660 833165ccb20f30912cc08b6e70e2e2e7 376 SUPERFAMILY SSF53633 9 252 6.94E-63 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMK58_11660 833165ccb20f30912cc08b6e70e2e2e7 376 SMART SM00359 286 368 4.9E-21 T 11-10-2018 IPR002478 PUA domain GO:0003723 AMK58_11660 833165ccb20f30912cc08b6e70e2e2e7 376 Hamap MF_00456 Glutamate 5-kinase [proB]. 9 268 35.571 T 11-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AMK58_11660 833165ccb20f30912cc08b6e70e2e2e7 376 Pfam PF00696 Amino acid kinase family 10 239 2.9E-41 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 AMK58_11660 833165ccb20f30912cc08b6e70e2e2e7 376 Gene3D G3DSA:2.30.130.10 275 376 3.1E-32 T 11-10-2018 IPR036974 PUA domain superfamily GO:0003723 AMK58_11660 833165ccb20f30912cc08b6e70e2e2e7 376 PIRSF PIRSF000729 5 376 2.4E-124 T 11-10-2018 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 AMK58_11660 833165ccb20f30912cc08b6e70e2e2e7 376 Gene3D G3DSA:3.40.1160.10 3 272 9.9E-82 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMK58_11660 833165ccb20f30912cc08b6e70e2e2e7 376 TIGRFAM TIGR01027 proB: glutamate 5-kinase 9 374 2.7E-122 T 11-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AMK58_11660 833165ccb20f30912cc08b6e70e2e2e7 376 PRINTS PR00474 Glutamate 5-kinase family signature 47 61 1.7E-47 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AMK58_11660 833165ccb20f30912cc08b6e70e2e2e7 376 PRINTS PR00474 Glutamate 5-kinase family signature 121 142 1.7E-47 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AMK58_11660 833165ccb20f30912cc08b6e70e2e2e7 376 PRINTS PR00474 Glutamate 5-kinase family signature 214 234 1.7E-47 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AMK58_11660 833165ccb20f30912cc08b6e70e2e2e7 376 PRINTS PR00474 Glutamate 5-kinase family signature 153 180 1.7E-47 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AMK58_11660 833165ccb20f30912cc08b6e70e2e2e7 376 PRINTS PR00474 Glutamate 5-kinase family signature 81 109 1.7E-47 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AMK58_05930 fd27bec821e01cffd37c20778a7df92b 294 SUPERFAMILY SSF52172 1 130 2.13E-34 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_05930 fd27bec821e01cffd37c20778a7df92b 294 Pfam PF00990 Diguanylate cyclase, GGDEF domain 131 289 2.2E-44 T 11-10-2018 IPR000160 GGDEF domain AMK58_05930 fd27bec821e01cffd37c20778a7df92b 294 Gene3D G3DSA:3.30.70.270 130 292 1.7E-55 T 11-10-2018 AMK58_05930 fd27bec821e01cffd37c20778a7df92b 294 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 129 291 1.8E-48 T 11-10-2018 IPR000160 GGDEF domain AMK58_05930 fd27bec821e01cffd37c20778a7df92b 294 SUPERFAMILY SSF55073 136 291 1.8E-47 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_05930 fd27bec821e01cffd37c20778a7df92b 294 Pfam PF00072 Response regulator receiver domain 3 114 5.4E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_05930 fd27bec821e01cffd37c20778a7df92b 294 SMART SM00267 120 293 2.9E-61 T 11-10-2018 IPR000160 GGDEF domain AMK58_05930 fd27bec821e01cffd37c20778a7df92b 294 Gene3D G3DSA:3.40.50.2300 1 129 4.3E-32 T 11-10-2018 AMK58_05930 fd27bec821e01cffd37c20778a7df92b 294 SMART SM00448 1 114 3.1E-33 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_00095 37c42ada2fc5bb75f958b71e3146db91 837 Gene3D G3DSA:1.10.287.130 445 522 1.0E-14 T 11-10-2018 AMK58_00095 37c42ada2fc5bb75f958b71e3146db91 837 Gene3D G3DSA:3.30.450.20 34 174 5.2E-10 T 11-10-2018 AMK58_00095 37c42ada2fc5bb75f958b71e3146db91 837 SUPERFAMILY SSF55785 324 444 2.42E-10 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_00095 37c42ada2fc5bb75f958b71e3146db91 837 SMART SM00387 564 675 3.1E-27 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_00095 37c42ada2fc5bb75f958b71e3146db91 837 Gene3D G3DSA:3.30.450.20 176 265 8.9E-18 T 11-10-2018 AMK58_00095 37c42ada2fc5bb75f958b71e3146db91 837 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 565 674 3.8E-21 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_00095 37c42ada2fc5bb75f958b71e3146db91 837 Pfam PF13426 PAS domain 324 434 1.7E-6 T 11-10-2018 IPR000014 PAS domain AMK58_00095 37c42ada2fc5bb75f958b71e3146db91 837 Pfam PF00072 Response regulator receiver domain 699 810 2.8E-13 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_00095 37c42ada2fc5bb75f958b71e3146db91 837 Pfam PF00512 His Kinase A (phospho-acceptor) domain 456 520 1.2E-8 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_00095 37c42ada2fc5bb75f958b71e3146db91 837 SUPERFAMILY SSF55874 510 676 7.2E-38 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_00095 37c42ada2fc5bb75f958b71e3146db91 837 Gene3D G3DSA:3.40.50.2300 689 818 2.0E-22 T 11-10-2018 AMK58_00095 37c42ada2fc5bb75f958b71e3146db91 837 SMART SM00388 455 520 3.0E-10 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_00095 37c42ada2fc5bb75f958b71e3146db91 837 Gene3D G3DSA:3.30.450.20 301 444 2.0E-13 T 11-10-2018 AMK58_00095 37c42ada2fc5bb75f958b71e3146db91 837 Gene3D G3DSA:3.30.565.10 528 676 9.4E-32 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_00095 37c42ada2fc5bb75f958b71e3146db91 837 SMART SM00448 697 810 4.5E-18 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_00095 37c42ada2fc5bb75f958b71e3146db91 837 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 318 442 1.0E-7 T 11-10-2018 IPR000014 PAS domain AMK58_00095 37c42ada2fc5bb75f958b71e3146db91 837 PRINTS PR00344 Bacterial sensor protein C-terminal signature 635 653 5.9E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_00095 37c42ada2fc5bb75f958b71e3146db91 837 PRINTS PR00344 Bacterial sensor protein C-terminal signature 600 614 5.9E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_00095 37c42ada2fc5bb75f958b71e3146db91 837 PRINTS PR00344 Bacterial sensor protein C-terminal signature 618 628 5.9E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_00095 37c42ada2fc5bb75f958b71e3146db91 837 PRINTS PR00344 Bacterial sensor protein C-terminal signature 659 672 5.9E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_00095 37c42ada2fc5bb75f958b71e3146db91 837 SUPERFAMILY SSF52172 696 819 8.97E-25 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_00095 37c42ada2fc5bb75f958b71e3146db91 837 SUPERFAMILY SSF47384 441 520 2.94E-13 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_28945 fd161bd448886e41d9225d79b78aa6bf 452 Gene3D G3DSA:2.40.30.170 65 75 2.6E-8 T 11-10-2018 AMK58_28945 fd161bd448886e41d9225d79b78aa6bf 452 Pfam PF13437 HlyD family secretion protein 299 403 6.8E-10 T 11-10-2018 AMK58_28945 fd161bd448886e41d9225d79b78aa6bf 452 Gene3D G3DSA:1.10.287.470 111 199 2.6E-8 T 11-10-2018 AMK58_28945 fd161bd448886e41d9225d79b78aa6bf 452 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 89 109 5.2E-25 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMK58_28945 fd161bd448886e41d9225d79b78aa6bf 452 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 47 70 5.2E-25 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMK58_28945 fd161bd448886e41d9225d79b78aa6bf 452 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 344 368 5.2E-25 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMK58_28945 fd161bd448886e41d9225d79b78aa6bf 452 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 368 391 5.2E-25 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMK58_28945 fd161bd448886e41d9225d79b78aa6bf 452 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 431 451 5.2E-25 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMK58_28945 fd161bd448886e41d9225d79b78aa6bf 452 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 416 431 5.2E-25 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMK58_28945 fd161bd448886e41d9225d79b78aa6bf 452 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 311 332 5.2E-25 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMK58_28945 fd161bd448886e41d9225d79b78aa6bf 452 Gene3D G3DSA:2.40.50.100 76 110 2.6E-8 T 11-10-2018 AMK58_28945 fd161bd448886e41d9225d79b78aa6bf 452 Pfam PF13533 Biotin-lipoyl like 88 121 2.7E-6 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain AMK58_28945 fd161bd448886e41d9225d79b78aa6bf 452 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 39 451 9.6E-97 T 11-10-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 AMK58_28945 fd161bd448886e41d9225d79b78aa6bf 452 Gene3D G3DSA:2.40.30.170 314 434 7.2E-10 T 11-10-2018 AMK58_23320 5675566e489f2cde1c6994b4f05442ce 604 SUPERFAMILY SSF90123 41 359 7.06E-18 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMK58_23320 5675566e489f2cde1c6994b4f05442ce 604 Gene3D G3DSA:3.40.50.300 379 593 1.1E-20 T 11-10-2018 AMK58_23320 5675566e489f2cde1c6994b4f05442ce 604 SUPERFAMILY SSF52540 382 582 7.19E-17 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_23320 5675566e489f2cde1c6994b4f05442ce 604 Pfam PF06472 ABC transporter transmembrane region 2 38 310 1.8E-39 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMK58_00445 f4cf3eb38dc2165d6af30487018f41f9 892 Gene3D G3DSA:2.70.150.10 17 225 1.3E-285 T 11-10-2018 AMK58_00445 f4cf3eb38dc2165d6af30487018f41f9 892 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 626 645 3.4E-38 T 11-10-2018 AMK58_00445 f4cf3eb38dc2165d6af30487018f41f9 892 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 549 559 3.4E-38 T 11-10-2018 AMK58_00445 f4cf3eb38dc2165d6af30487018f41f9 892 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 160 174 3.4E-38 T 11-10-2018 AMK58_00445 f4cf3eb38dc2165d6af30487018f41f9 892 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 650 662 3.4E-38 T 11-10-2018 AMK58_00445 f4cf3eb38dc2165d6af30487018f41f9 892 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 527 538 3.4E-38 T 11-10-2018 AMK58_00445 f4cf3eb38dc2165d6af30487018f41f9 892 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 323 337 3.4E-38 T 11-10-2018 AMK58_00445 f4cf3eb38dc2165d6af30487018f41f9 892 Pfam PF00689 Cation transporting ATPase, C-terminus 711 882 1.2E-41 T 11-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 AMK58_00445 f4cf3eb38dc2165d6af30487018f41f9 892 Pfam PF00690 Cation transporter/ATPase, N-terminus 3 69 3.8E-21 T 11-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 AMK58_00445 f4cf3eb38dc2165d6af30487018f41f9 892 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 598 614 6.6E-19 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AMK58_00445 f4cf3eb38dc2165d6af30487018f41f9 892 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 626 642 6.6E-19 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AMK58_00445 f4cf3eb38dc2165d6af30487018f41f9 892 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 658 683 6.6E-19 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AMK58_00445 f4cf3eb38dc2165d6af30487018f41f9 892 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 485 503 6.6E-19 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AMK58_00445 f4cf3eb38dc2165d6af30487018f41f9 892 Gene3D G3DSA:3.40.50.1000 320 671 1.3E-285 T 11-10-2018 IPR023214 HAD superfamily AMK58_00445 f4cf3eb38dc2165d6af30487018f41f9 892 SMART SM00831 2 75 2.2E-34 T 11-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 AMK58_00445 f4cf3eb38dc2165d6af30487018f41f9 892 Pfam PF00702 haloacid dehalogenase-like hydrolase 321 640 9.4E-20 T 11-10-2018 AMK58_00445 f4cf3eb38dc2165d6af30487018f41f9 892 Pfam PF00122 E1-E2 ATPase 110 303 1.5E-52 T 11-10-2018 AMK58_00445 f4cf3eb38dc2165d6af30487018f41f9 892 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 325 331 - T 11-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 AMK58_00445 f4cf3eb38dc2165d6af30487018f41f9 892 SUPERFAMILY SSF81665 2 889 2.09E-123 T 11-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 AMK58_00445 f4cf3eb38dc2165d6af30487018f41f9 892 Gene3D G3DSA:1.20.1110.10 53 881 1.3E-285 T 11-10-2018 AMK58_00445 f4cf3eb38dc2165d6af30487018f41f9 892 SUPERFAMILY SSF81660 330 531 5.89E-55 T 11-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AMK58_00445 f4cf3eb38dc2165d6af30487018f41f9 892 Gene3D G3DSA:3.40.1110.10 333 534 1.3E-285 T 11-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AMK58_00445 f4cf3eb38dc2165d6af30487018f41f9 892 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 592 716 4.2E-34 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AMK58_00445 f4cf3eb38dc2165d6af30487018f41f9 892 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 81 343 3.2E-39 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AMK58_00445 f4cf3eb38dc2165d6af30487018f41f9 892 SUPERFAMILY SSF81653 112 220 1.7E-29 T 11-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 AMK58_00445 f4cf3eb38dc2165d6af30487018f41f9 892 SUPERFAMILY SSF56784 321 730 2.07E-58 T 11-10-2018 IPR036412 HAD-like superfamily AMK58_26040 79f3db6dc8b8f928821e9c4b147c240c 314 SUPERFAMILY SSF52402 2 191 1.09E-56 T 11-10-2018 AMK58_26040 79f3db6dc8b8f928821e9c4b147c240c 314 PIRSF PIRSF000089 1 314 7.1E-111 T 11-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 AMK58_26040 79f3db6dc8b8f928821e9c4b147c240c 314 Gene3D G3DSA:3.40.50.1220 189 314 6.9E-60 T 11-10-2018 AMK58_26040 79f3db6dc8b8f928821e9c4b147c240c 314 SUPERFAMILY SSF52467 192 314 7.05E-50 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AMK58_26040 79f3db6dc8b8f928821e9c4b147c240c 314 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 258 284 - T 11-10-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 AMK58_26040 79f3db6dc8b8f928821e9c4b147c240c 314 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 195 277 3.0E-38 T 11-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 AMK58_26040 79f3db6dc8b8f928821e9c4b147c240c 314 SMART SM00893 3 187 1.0E-52 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AMK58_26040 79f3db6dc8b8f928821e9c4b147c240c 314 Gene3D G3DSA:3.40.50.620 2 188 2.0E-56 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_26040 79f3db6dc8b8f928821e9c4b147c240c 314 Pfam PF01012 Electron transfer flavoprotein domain 4 172 1.0E-41 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AMK58_25300 2e2c7083d697548122c66fbf0b9109f6 240 SUPERFAMILY SSF158791 154 212 4.58E-7 T 11-10-2018 AMK58_25300 2e2c7083d697548122c66fbf0b9109f6 240 Gene3D G3DSA:1.25.60.10 125 214 2.8E-5 T 11-10-2018 IPR038076 MgtE, N-terminal domain superfamily AMK58_28435 e9b70eae637c5e7bcd7e6336162fb329 597 SMART SM00382 386 572 5.1E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_28435 e9b70eae637c5e7bcd7e6336162fb329 597 SUPERFAMILY SSF90123 24 346 2.35E-63 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMK58_28435 e9b70eae637c5e7bcd7e6336162fb329 597 Gene3D G3DSA:3.40.50.300 350 597 4.2E-89 T 11-10-2018 AMK58_28435 e9b70eae637c5e7bcd7e6336162fb329 597 SUPERFAMILY SSF52540 353 595 3.28E-89 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_28435 e9b70eae637c5e7bcd7e6336162fb329 597 Gene3D G3DSA:1.20.1560.10 7 344 3.8E-68 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMK58_28435 e9b70eae637c5e7bcd7e6336162fb329 597 Pfam PF00005 ABC transporter 378 526 4.9E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_28435 e9b70eae637c5e7bcd7e6336162fb329 597 ProSitePatterns PS00211 ABC transporters family signature. 498 512 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_28435 e9b70eae637c5e7bcd7e6336162fb329 597 Pfam PF00664 ABC transporter transmembrane region 37 312 1.5E-37 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMK58_04405 80013417a0aa216953f66b9602f54e11 714 SUPERFAMILY SSF47188 577 703 8.5E-29 T 11-10-2018 IPR035938 Hemerythrin-like superfamily AMK58_04405 80013417a0aa216953f66b9602f54e11 714 Pfam PF17200 Single Cache domain 2 37 187 5.9E-45 T 11-10-2018 IPR033480 Single Cache domain 2 AMK58_04405 80013417a0aa216953f66b9602f54e11 714 Gene3D G3DSA:1.20.1480.50 182 269 1.3E-13 T 11-10-2018 AMK58_04405 80013417a0aa216953f66b9602f54e11 714 Gene3D G3DSA:1.20.120.50 573 706 5.3E-33 T 11-10-2018 IPR035938 Hemerythrin-like superfamily AMK58_04405 80013417a0aa216953f66b9602f54e11 714 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 377 524 1.5E-30 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_04405 80013417a0aa216953f66b9602f54e11 714 SMART SM00283 300 554 1.7E-40 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_04405 80013417a0aa216953f66b9602f54e11 714 Pfam PF01814 Hemerythrin HHE cation binding domain 589 694 1.4E-10 T 11-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 AMK58_04405 80013417a0aa216953f66b9602f54e11 714 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 427 456 1.0E-8 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_04405 80013417a0aa216953f66b9602f54e11 714 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 328 357 1.0E-8 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_04405 80013417a0aa216953f66b9602f54e11 714 Gene3D G3DSA:3.30.450.20 35 181 4.7E-59 T 11-10-2018 AMK58_04405 80013417a0aa216953f66b9602f54e11 714 Pfam PF00672 HAMP domain 211 257 2.7E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_04405 80013417a0aa216953f66b9602f54e11 714 SUPERFAMILY SSF58104 239 553 6.8E-59 T 11-10-2018 AMK58_04405 80013417a0aa216953f66b9602f54e11 714 SMART SM00304 211 264 7.2E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_04405 80013417a0aa216953f66b9602f54e11 714 ProSitePatterns PS00550 Hemerythrin family signature. 632 659 - T 11-10-2018 IPR016131 Haemerythrin, iron-binding site GO:0046872 AMK58_04405 80013417a0aa216953f66b9602f54e11 714 SMART SM01049 34 128 2.1E-40 T 11-10-2018 IPR033480 Single Cache domain 2 AMK58_04405 80013417a0aa216953f66b9602f54e11 714 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 580 702 3.5E-31 T 11-10-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 AMK58_04405 80013417a0aa216953f66b9602f54e11 714 Gene3D G3DSA:1.10.287.950 270 557 1.4E-51 T 11-10-2018 AMK58_16320 1998a5e3187c1a66dce94388ebd6963a 325 ProSitePatterns PS01173 Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 93 109 - T 11-10-2018 IPR002168 Lipase, GDXG, putative histidine active site GO:0016787 Reactome: R-HSA-163560 AMK58_16320 1998a5e3187c1a66dce94388ebd6963a 325 Pfam PF07859 alpha/beta hydrolase fold 93 299 1.6E-61 T 11-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 AMK58_16320 1998a5e3187c1a66dce94388ebd6963a 325 SUPERFAMILY SSF53474 40 324 3.54E-67 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_16320 1998a5e3187c1a66dce94388ebd6963a 325 Gene3D G3DSA:3.40.50.1820 4 325 3.5E-87 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_00815 03b32240c68c0232ea7054217b4017ff 143 Gene3D G3DSA:1.10.10.10 9 90 7.6E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_00815 03b32240c68c0232ea7054217b4017ff 143 Pfam PF01475 Ferric uptake regulator family 17 112 4.5E-20 T 11-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 AMK58_00815 03b32240c68c0232ea7054217b4017ff 143 SUPERFAMILY SSF46785 9 132 8.4E-28 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_00045 b506398f29c31e51c5a1d1cdd0821d8a 184 Pfam PF13466 STAS domain 39 118 7.3E-13 T 11-10-2018 IPR002645 STAS domain AMK58_00045 b506398f29c31e51c5a1d1cdd0821d8a 184 SUPERFAMILY SSF52091 28 132 1.51E-17 T 11-10-2018 IPR036513 STAS domain superfamily AMK58_00045 b506398f29c31e51c5a1d1cdd0821d8a 184 Gene3D G3DSA:3.30.750.24 24 136 2.0E-19 T 11-10-2018 IPR036513 STAS domain superfamily AMK58_13830 b506398f29c31e51c5a1d1cdd0821d8a 184 Pfam PF13466 STAS domain 39 118 7.3E-13 T 11-10-2018 IPR002645 STAS domain AMK58_13830 b506398f29c31e51c5a1d1cdd0821d8a 184 SUPERFAMILY SSF52091 28 132 1.51E-17 T 11-10-2018 IPR036513 STAS domain superfamily AMK58_13830 b506398f29c31e51c5a1d1cdd0821d8a 184 Gene3D G3DSA:3.30.750.24 24 136 2.0E-19 T 11-10-2018 IPR036513 STAS domain superfamily AMK58_27770 feb899be0ce9c116d310f6ecca6a9a71 165 SUPERFAMILY SSF54637 14 161 2.83E-45 T 11-10-2018 IPR029069 HotDog domain superfamily AMK58_27770 feb899be0ce9c116d310f6ecca6a9a71 165 Gene3D G3DSA:3.10.129.10 8 160 4.6E-49 T 11-10-2018 AMK58_27770 feb899be0ce9c116d310f6ecca6a9a71 165 Pfam PF01575 MaoC like domain 23 132 1.4E-24 T 11-10-2018 IPR002539 MaoC-like dehydratase domain AMK58_24905 feb899be0ce9c116d310f6ecca6a9a71 165 SUPERFAMILY SSF54637 14 161 2.83E-45 T 11-10-2018 IPR029069 HotDog domain superfamily AMK58_24905 feb899be0ce9c116d310f6ecca6a9a71 165 Gene3D G3DSA:3.10.129.10 8 160 4.6E-49 T 11-10-2018 AMK58_24905 feb899be0ce9c116d310f6ecca6a9a71 165 Pfam PF01575 MaoC like domain 23 132 1.4E-24 T 11-10-2018 IPR002539 MaoC-like dehydratase domain AMK58_29035 e7cc0059a0e3032d6fd52673a30914fb 947 Gene3D G3DSA:3.40.50.2000 664 840 2.3E-32 T 11-10-2018 AMK58_29035 e7cc0059a0e3032d6fd52673a30914fb 947 SUPERFAMILY SSF53756 505 855 3.24E-45 T 11-10-2018 AMK58_29035 e7cc0059a0e3032d6fd52673a30914fb 947 SUPERFAMILY SSF53448 254 367 3.15E-8 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_29035 e7cc0059a0e3032d6fd52673a30914fb 947 Pfam PF00534 Glycosyl transferases group 1 684 821 8.6E-14 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 AMK58_29035 e7cc0059a0e3032d6fd52673a30914fb 947 Gene3D G3DSA:3.40.50.2000 619 853 2.3E-32 T 11-10-2018 AMK58_08840 f4585a6657c2431bc50166a7e86d704f 227 Gene3D G3DSA:3.10.100.10 45 188 2.4E-8 T 11-10-2018 IPR016186 C-type lectin-like/link domain superfamily AMK58_08840 f4585a6657c2431bc50166a7e86d704f 227 SUPERFAMILY SSF56436 35 204 2.95E-33 T 11-10-2018 IPR016187 C-type lectin fold AMK58_14065 0ed1048e5fe2d75b3138957285c85cd0 273 Gene3D G3DSA:1.10.3720.10 2 264 9.1E-58 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_14065 0ed1048e5fe2d75b3138957285c85cd0 273 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 100 267 3.3E-16 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_14065 0ed1048e5fe2d75b3138957285c85cd0 273 SUPERFAMILY SSF161098 7 273 1.12E-64 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_26460 8b9ac6b4d90876e5ef065b5b59569c44 847 Gene3D G3DSA:3.30.450.40 7 472 5.8E-169 T 11-10-2018 IPR029016 GAF-like domain superfamily AMK58_26460 8b9ac6b4d90876e5ef065b5b59569c44 847 SUPERFAMILY SSF55785 4 118 4.89E-31 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_26460 8b9ac6b4d90876e5ef065b5b59569c44 847 Gene3D G3DSA:3.30.565.10 579 703 4.0E-7 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_26460 8b9ac6b4d90876e5ef065b5b59569c44 847 Gene3D G3DSA:3.40.50.2300 732 846 1.5E-35 T 11-10-2018 AMK58_26460 8b9ac6b4d90876e5ef065b5b59569c44 847 Pfam PF00072 Response regulator receiver domain 735 817 5.3E-7 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_26460 8b9ac6b4d90876e5ef065b5b59569c44 847 SMART SM00911 520 602 3.9E-28 T 11-10-2018 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 AMK58_26460 8b9ac6b4d90876e5ef065b5b59569c44 847 SUPERFAMILY SSF55781 128 306 2.62E-58 T 11-10-2018 AMK58_26460 8b9ac6b4d90876e5ef065b5b59569c44 847 SMART SM00448 733 841 1.6E-6 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_26460 8b9ac6b4d90876e5ef065b5b59569c44 847 SUPERFAMILY SSF52172 734 845 1.21E-15 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_26460 8b9ac6b4d90876e5ef065b5b59569c44 847 Pfam PF07536 HWE histidine kinase 520 602 1.3E-20 T 11-10-2018 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 AMK58_26460 8b9ac6b4d90876e5ef065b5b59569c44 847 SUPERFAMILY SSF55874 598 702 3.97E-5 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_26460 8b9ac6b4d90876e5ef065b5b59569c44 847 SUPERFAMILY SSF55781 315 501 7.85E-56 T 11-10-2018 AMK58_26460 8b9ac6b4d90876e5ef065b5b59569c44 847 PIRSF PIRSF036397 1 847 1.5E-301 T 11-10-2018 IPR009219 Bacteriophytochrome, CheY-like AMK58_26460 8b9ac6b4d90876e5ef065b5b59569c44 847 Gene3D G3DSA:3.30.450.270 310 489 5.8E-169 T 11-10-2018 AMK58_26460 8b9ac6b4d90876e5ef065b5b59569c44 847 SMART SM00065 141 314 1.4E-10 T 11-10-2018 IPR003018 GAF domain GO:0005515 AMK58_26460 8b9ac6b4d90876e5ef065b5b59569c44 847 Gene3D G3DSA:3.30.450.20 17 243 5.8E-169 T 11-10-2018 AMK58_26460 8b9ac6b4d90876e5ef065b5b59569c44 847 PRINTS PR01033 Phytochrome signature 156 175 2.0E-15 T 11-10-2018 IPR001294 Phytochrome GO:0006355|GO:0009584 AMK58_26460 8b9ac6b4d90876e5ef065b5b59569c44 847 PRINTS PR01033 Phytochrome signature 459 477 2.0E-15 T 11-10-2018 IPR001294 Phytochrome GO:0006355|GO:0009584 AMK58_26460 8b9ac6b4d90876e5ef065b5b59569c44 847 PRINTS PR01033 Phytochrome signature 242 263 2.0E-15 T 11-10-2018 IPR001294 Phytochrome GO:0006355|GO:0009584 AMK58_26460 8b9ac6b4d90876e5ef065b5b59569c44 847 PRINTS PR01033 Phytochrome signature 425 444 2.0E-15 T 11-10-2018 IPR001294 Phytochrome GO:0006355|GO:0009584 AMK58_26460 8b9ac6b4d90876e5ef065b5b59569c44 847 Pfam PF00360 Phytochrome region 322 498 1.9E-53 T 11-10-2018 IPR013515 Phytochrome, central region GO:0006355|GO:0009584|GO:0018298 AMK58_26460 8b9ac6b4d90876e5ef065b5b59569c44 847 Pfam PF08446 PAS fold 10 116 8.6E-13 T 11-10-2018 IPR013654 PAS fold-2 GO:0006355 AMK58_26460 8b9ac6b4d90876e5ef065b5b59569c44 847 Pfam PF01590 GAF domain 141 301 1.0E-18 T 11-10-2018 IPR003018 GAF domain GO:0005515 AMK58_23215 dcc8f451069dcb96638bee6135737083 286 SUPERFAMILY SSF52540 26 264 1.22E-54 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_23215 dcc8f451069dcb96638bee6135737083 286 SMART SM00382 53 244 2.0E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_23215 dcc8f451069dcb96638bee6135737083 286 ProSitePatterns PS00211 ABC transporters family signature. 165 179 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_23215 dcc8f451069dcb96638bee6135737083 286 Gene3D G3DSA:3.40.50.300 23 266 1.4E-55 T 11-10-2018 AMK58_23215 dcc8f451069dcb96638bee6135737083 286 Pfam PF00005 ABC transporter 44 192 5.5E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_19655 c3696a2af3bc3e57813299c8d6c6744f 838 SUPERFAMILY SSF141868 576 826 9.94E-89 T 11-10-2018 IPR035919 EAL domain superfamily AMK58_19655 c3696a2af3bc3e57813299c8d6c6744f 838 Pfam PF00990 Diguanylate cyclase, GGDEF domain 399 556 7.3E-42 T 11-10-2018 IPR000160 GGDEF domain AMK58_19655 c3696a2af3bc3e57813299c8d6c6744f 838 SMART SM00091 271 339 0.0053 T 11-10-2018 IPR000014 PAS domain AMK58_19655 c3696a2af3bc3e57813299c8d6c6744f 838 SMART SM00091 6 73 3.0E-5 T 11-10-2018 IPR000014 PAS domain AMK58_19655 c3696a2af3bc3e57813299c8d6c6744f 838 SMART SM00091 143 211 2.6E-4 T 11-10-2018 IPR000014 PAS domain AMK58_19655 c3696a2af3bc3e57813299c8d6c6744f 838 SMART SM00086 217 259 2.0E-7 T 11-10-2018 IPR001610 PAC motif AMK58_19655 c3696a2af3bc3e57813299c8d6c6744f 838 SMART SM00086 80 131 0.098 T 11-10-2018 IPR001610 PAC motif AMK58_19655 c3696a2af3bc3e57813299c8d6c6744f 838 SMART SM00086 346 388 7.3E-7 T 11-10-2018 IPR001610 PAC motif AMK58_19655 c3696a2af3bc3e57813299c8d6c6744f 838 Gene3D G3DSA:3.20.20.450 575 831 4.3E-102 T 11-10-2018 IPR035919 EAL domain superfamily AMK58_19655 c3696a2af3bc3e57813299c8d6c6744f 838 SMART SM00267 388 561 2.8E-53 T 11-10-2018 IPR000160 GGDEF domain AMK58_19655 c3696a2af3bc3e57813299c8d6c6744f 838 Pfam PF08447 PAS fold 294 381 3.7E-17 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 AMK58_19655 c3696a2af3bc3e57813299c8d6c6744f 838 Pfam PF08447 PAS fold 29 124 1.6E-12 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 AMK58_19655 c3696a2af3bc3e57813299c8d6c6744f 838 Pfam PF08447 PAS fold 167 251 1.6E-18 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 AMK58_19655 c3696a2af3bc3e57813299c8d6c6744f 838 SUPERFAMILY SSF55073 404 563 7.85E-42 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_19655 c3696a2af3bc3e57813299c8d6c6744f 838 SUPERFAMILY SSF55785 256 386 7.25E-24 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_19655 c3696a2af3bc3e57813299c8d6c6744f 838 SUPERFAMILY SSF55785 16 133 8.22E-18 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_19655 c3696a2af3bc3e57813299c8d6c6744f 838 Gene3D G3DSA:2.10.70.100 77 133 6.3E-8 T 11-10-2018 AMK58_19655 c3696a2af3bc3e57813299c8d6c6744f 838 Gene3D G3DSA:2.10.70.100 344 390 3.7E-9 T 11-10-2018 AMK58_19655 c3696a2af3bc3e57813299c8d6c6744f 838 Gene3D G3DSA:2.10.70.100 214 261 1.4E-13 T 11-10-2018 AMK58_19655 c3696a2af3bc3e57813299c8d6c6744f 838 Gene3D G3DSA:3.30.450.20 4 72 1.9E-16 T 11-10-2018 AMK58_19655 c3696a2af3bc3e57813299c8d6c6744f 838 Gene3D G3DSA:3.30.450.20 267 340 4.6E-21 T 11-10-2018 AMK58_19655 c3696a2af3bc3e57813299c8d6c6744f 838 Gene3D G3DSA:3.30.450.20 139 209 5.3E-21 T 11-10-2018 AMK58_19655 c3696a2af3bc3e57813299c8d6c6744f 838 SMART SM00052 571 819 5.1E-114 T 11-10-2018 IPR001633 EAL domain AMK58_19655 c3696a2af3bc3e57813299c8d6c6744f 838 Gene3D G3DSA:3.30.70.270 394 574 1.2E-51 T 11-10-2018 AMK58_19655 c3696a2af3bc3e57813299c8d6c6744f 838 SUPERFAMILY SSF55785 128 257 4.19E-24 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_19655 c3696a2af3bc3e57813299c8d6c6744f 838 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 398 561 7.2E-35 T 11-10-2018 IPR000160 GGDEF domain AMK58_19655 c3696a2af3bc3e57813299c8d6c6744f 838 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 268 395 5.5E-15 T 11-10-2018 IPR000014 PAS domain AMK58_19655 c3696a2af3bc3e57813299c8d6c6744f 838 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 139 266 3.9E-12 T 11-10-2018 IPR000014 PAS domain AMK58_19655 c3696a2af3bc3e57813299c8d6c6744f 838 Pfam PF00563 EAL domain 578 814 4.7E-71 T 11-10-2018 IPR001633 EAL domain AMK58_28855 f382d2554905404969fa6d56b15fd920 465 Gene3D G3DSA:3.40.50.300 37 291 3.6E-46 T 11-10-2018 AMK58_28855 f382d2554905404969fa6d56b15fd920 465 Gene3D G3DSA:2.70.50.60 308 453 9.3E-13 T 11-10-2018 AMK58_28855 f382d2554905404969fa6d56b15fd920 465 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_28855 f382d2554905404969fa6d56b15fd920 465 SUPERFAMILY SSF52540 35 245 3.76E-46 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_28855 f382d2554905404969fa6d56b15fd920 465 Pfam PF14524 Wzt C-terminal domain 318 453 2.0E-27 T 11-10-2018 IPR029439 Wzt, C-terminal AMK58_28855 f382d2554905404969fa6d56b15fd920 465 Pfam PF00005 ABC transporter 49 180 1.0E-18 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_28855 f382d2554905404969fa6d56b15fd920 465 SMART SM00382 58 228 9.8E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_26930 b565947e8618a08cd95738ca82dca559 414 SUPERFAMILY SSF55021 327 393 2.63E-7 T 11-10-2018 AMK58_26930 b565947e8618a08cd95738ca82dca559 414 Gene3D G3DSA:3.30.70.260 326 399 9.0E-7 T 11-10-2018 AMK58_26930 b565947e8618a08cd95738ca82dca559 414 Gene3D G3DSA:3.40.50.1100 8 307 1.2E-107 T 11-10-2018 AMK58_26930 b565947e8618a08cd95738ca82dca559 414 SUPERFAMILY SSF53686 4 310 1.83E-86 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMK58_26930 b565947e8618a08cd95738ca82dca559 414 Gene3D G3DSA:3.40.50.1100 51 147 1.2E-107 T 11-10-2018 AMK58_26930 b565947e8618a08cd95738ca82dca559 414 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 17 302 4.7E-71 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AMK58_26930 b565947e8618a08cd95738ca82dca559 414 TIGRFAM TIGR01127 ilvA_1Cterm: threonine ammonia-lyase 22 396 2.9E-119 T 11-10-2018 IPR005789 Threonine dehydratase, catabolic GO:0004794|GO:0006567 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 AMK58_15300 922872a9f42e21fcd566aea0ae69641d 703 Gene3D G3DSA:2.160.20.10 75 360 9.2E-32 T 11-10-2018 IPR012334 Pectin lyase fold AMK58_15300 922872a9f42e21fcd566aea0ae69641d 703 Gene3D G3DSA:2.160.20.10 363 535 8.3E-8 T 11-10-2018 IPR012334 Pectin lyase fold AMK58_15300 922872a9f42e21fcd566aea0ae69641d 703 SUPERFAMILY SSF51126 75 358 6.46E-20 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor AMK58_15300 922872a9f42e21fcd566aea0ae69641d 703 Gene3D G3DSA:2.10.10.30 1 56 9.5E-15 T 11-10-2018 AMK58_15300 922872a9f42e21fcd566aea0ae69641d 703 SUPERFAMILY SSF51126 320 556 1.12E-14 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor AMK58_15300 922872a9f42e21fcd566aea0ae69641d 703 Pfam PF13229 Right handed beta helix region 336 515 6.2E-11 T 11-10-2018 IPR039448 Right handed beta helix domain AMK58_15300 922872a9f42e21fcd566aea0ae69641d 703 SMART SM00710 509 539 1700.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_15300 922872a9f42e21fcd566aea0ae69641d 703 SMART SM00710 457 480 4000.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_15300 922872a9f42e21fcd566aea0ae69641d 703 SMART SM00710 277 299 350.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_15300 922872a9f42e21fcd566aea0ae69641d 703 SMART SM00710 368 390 75.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_15300 922872a9f42e21fcd566aea0ae69641d 703 SMART SM00710 391 425 660.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_15300 922872a9f42e21fcd566aea0ae69641d 703 SMART SM00710 246 268 16.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_15300 922872a9f42e21fcd566aea0ae69641d 703 SMART SM00710 223 243 6200.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_15300 922872a9f42e21fcd566aea0ae69641d 703 SMART SM00710 319 341 530.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_15300 922872a9f42e21fcd566aea0ae69641d 703 TIGRFAM TIGR03804 para_beta_helix: parallel beta-helix repeat 365 405 1.5E-5 T 11-10-2018 IPR022441 Parallel beta-helix repeat-2 Reactome: R-HSA-8951664|Reactome: R-HSA-983168 AMK58_15300 922872a9f42e21fcd566aea0ae69641d 703 Pfam PF12708 Pectate lyase superfamily protein 76 296 2.0E-14 T 11-10-2018 IPR024535 Pectate lyase superfamily protein AMK58_06915 05d443176a8337bc76c1c421b5686883 398 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 266 291 - T 11-10-2018 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMK58_06915 05d443176a8337bc76c1c421b5686883 398 Gene3D G3DSA:3.30.470.20 1 243 1.9E-94 T 11-10-2018 AMK58_06915 05d443176a8337bc76c1c421b5686883 398 Gene3D G3DSA:3.40.50.261 249 397 2.5E-60 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMK58_06915 05d443176a8337bc76c1c421b5686883 398 PIRSF PIRSF001554 1 397 4.6E-153 T 11-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMK58_06915 05d443176a8337bc76c1c421b5686883 398 SUPERFAMILY SSF56059 1 247 9.49E-83 T 11-10-2018 AMK58_06915 05d443176a8337bc76c1c421b5686883 398 Gene3D G3DSA:3.30.1490.20 21 113 1.9E-94 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMK58_06915 05d443176a8337bc76c1c421b5686883 398 Pfam PF08442 ATP-grasp domain 2 211 7.4E-78 T 11-10-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMK58_06915 05d443176a8337bc76c1c421b5686883 398 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 394 8.9E-162 T 11-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMK58_06915 05d443176a8337bc76c1c421b5686883 398 Pfam PF00549 CoA-ligase 271 391 8.3E-27 T 11-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMK58_06915 05d443176a8337bc76c1c421b5686883 398 Hamap MF_00558 Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. 1 395 44.774 T 11-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMK58_06915 05d443176a8337bc76c1c421b5686883 398 SUPERFAMILY SSF52210 248 394 4.06E-56 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMK58_05885 ccebb9595b61afb1ba6aa15524a52c9f 135 SUPERFAMILY SSF54534 59 131 3.79E-13 T 11-10-2018 AMK58_05885 ccebb9595b61afb1ba6aa15524a52c9f 135 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 60 131 3.1E-15 T 11-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 AMK58_05885 ccebb9595b61afb1ba6aa15524a52c9f 135 Gene3D G3DSA:3.10.50.30 55 134 3.6E-18 T 11-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 AMK58_05885 ccebb9595b61afb1ba6aa15524a52c9f 135 Pfam PF14760 Rnk N-terminus 11 49 2.2E-7 T 11-10-2018 IPR029462 Regulator of nucleoside diphosphate kinase, N-terminal domain AMK58_05885 ccebb9595b61afb1ba6aa15524a52c9f 135 PIRSF PIRSF006092 27 134 1.7E-17 T 11-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 AMK58_10815 5351e68d9283899d9448cfd6c4b52a7e 332 SUPERFAMILY SSF53756 2 328 1.53E-66 T 11-10-2018 AMK58_10815 5351e68d9283899d9448cfd6c4b52a7e 332 Pfam PF13692 Glycosyl transferases group 1 179 292 1.2E-18 T 11-10-2018 AMK58_10815 5351e68d9283899d9448cfd6c4b52a7e 332 Gene3D G3DSA:3.40.50.2000 1 172 9.1E-23 T 11-10-2018 AMK58_10815 5351e68d9283899d9448cfd6c4b52a7e 332 Gene3D G3DSA:3.40.50.2000 173 318 1.8E-26 T 11-10-2018 AMK58_10815 5351e68d9283899d9448cfd6c4b52a7e 332 Pfam PF13439 Glycosyltransferase Family 4 14 165 3.1E-15 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AMK58_17920 7d8e6b0b76508753eafa3928628213aa 602 Gene3D G3DSA:3.40.50.1110 10 284 3.3E-67 T 11-10-2018 IPR036514 SGNH hydrolase superfamily AMK58_17920 7d8e6b0b76508753eafa3928628213aa 602 SMART SM00869 328 591 1.4E-27 T 11-10-2018 IPR005546 Autotransporter beta-domain AMK58_17920 7d8e6b0b76508753eafa3928628213aa 602 SUPERFAMILY SSF103515 291 602 1.31E-41 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily AMK58_17920 7d8e6b0b76508753eafa3928628213aa 602 Pfam PF00657 GDSL-like Lipase/Acylhydrolase 21 275 1.8E-5 T 11-10-2018 IPR001087 GDSL lipase/esterase GO:0016788 AMK58_17920 7d8e6b0b76508753eafa3928628213aa 602 Gene3D G3DSA:2.40.128.130 312 602 2.0E-52 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily AMK58_17920 7d8e6b0b76508753eafa3928628213aa 602 SUPERFAMILY SSF52266 20 281 3.33E-17 T 11-10-2018 AMK58_17920 7d8e6b0b76508753eafa3928628213aa 602 ProSitePatterns PS01098 Lipolytic enzymes "G-D-S-L" family, serine active site. 21 32 - T 11-10-2018 IPR008265 Lipase, GDSL, active site GO:0006629|GO:0016298 Reactome: R-HSA-1482788|Reactome: R-HSA-975634 AMK58_17920 7d8e6b0b76508753eafa3928628213aa 602 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 337 602 1.0E-12 T 11-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 AMK58_17920 7d8e6b0b76508753eafa3928628213aa 602 Pfam PF03797 Autotransporter beta-domain 335 580 4.3E-43 T 11-10-2018 IPR005546 Autotransporter beta-domain AMK58_27495 26560e0dc6dfb4990f65ce89817570ed 489 PRINTS PR00067 Catalase signature 286 313 1.4E-77 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMK58_27495 26560e0dc6dfb4990f65ce89817570ed 489 PRINTS PR00067 Catalase signature 81 99 1.4E-77 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMK58_27495 26560e0dc6dfb4990f65ce89817570ed 489 PRINTS PR00067 Catalase signature 102 119 1.4E-77 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMK58_27495 26560e0dc6dfb4990f65ce89817570ed 489 PRINTS PR00067 Catalase signature 121 139 1.4E-77 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMK58_27495 26560e0dc6dfb4990f65ce89817570ed 489 PRINTS PR00067 Catalase signature 318 344 1.4E-77 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMK58_27495 26560e0dc6dfb4990f65ce89817570ed 489 PRINTS PR00067 Catalase signature 18 41 1.4E-77 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMK58_27495 26560e0dc6dfb4990f65ce89817570ed 489 Gene3D G3DSA:2.40.180.10 1 482 8.4E-235 T 11-10-2018 IPR037060 Catalase core domain superfamily GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 AMK58_27495 26560e0dc6dfb4990f65ce89817570ed 489 Pfam PF06628 Catalase-related immune-responsive 414 474 4.3E-18 T 11-10-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMK58_27495 26560e0dc6dfb4990f65ce89817570ed 489 ProSitePatterns PS00438 Catalase proximal active site signature. 41 57 - T 11-10-2018 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMK58_27495 26560e0dc6dfb4990f65ce89817570ed 489 PIRSF PIRSF038928 1 480 2.3E-225 T 11-10-2018 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMK58_27495 26560e0dc6dfb4990f65ce89817570ed 489 Pfam PF00199 Catalase 5 387 1.1E-198 T 11-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMK58_27495 26560e0dc6dfb4990f65ce89817570ed 489 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 331 339 - T 11-10-2018 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMK58_27495 26560e0dc6dfb4990f65ce89817570ed 489 SUPERFAMILY SSF56634 3 480 3.27E-216 T 11-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMK58_27495 26560e0dc6dfb4990f65ce89817570ed 489 SMART SM01060 5 390 4.1E-295 T 11-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMK58_15020 a5d4e99c13e3692338121e1bf3540262 1878 Gene3D G3DSA:3.90.1200.10 233 516 5.2E-63 T 11-10-2018 AMK58_15020 a5d4e99c13e3692338121e1bf3540262 1878 Pfam PF02446 4-alpha-glucanotransferase 1320 1834 1.3E-123 T 11-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 AMK58_15020 a5d4e99c13e3692338121e1bf3540262 1878 SUPERFAMILY SSF81296 538 630 2.8E-20 T 11-10-2018 IPR014756 Immunoglobulin E-set AMK58_15020 a5d4e99c13e3692338121e1bf3540262 1878 TIGRFAM TIGR02402 trehalose_TreZ: malto-oligosyltrehalose trehalohydrolase 553 1104 5.0E-220 T 11-10-2018 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00500+3.2.1.141|MetaCyc: PWY-2661 AMK58_15020 a5d4e99c13e3692338121e1bf3540262 1878 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 1274 1839 8.2E-141 T 11-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 AMK58_15020 a5d4e99c13e3692338121e1bf3540262 1878 Gene3D G3DSA:3.20.20.80 1313 1844 1.0E-133 T 11-10-2018 AMK58_15020 a5d4e99c13e3692338121e1bf3540262 1878 SUPERFAMILY SSF51445 627 1057 1.04E-109 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily AMK58_15020 a5d4e99c13e3692338121e1bf3540262 1878 Pfam PF11941 Domain of unknown function (DUF3459) 1047 1135 4.5E-16 T 11-10-2018 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) AMK58_15020 a5d4e99c13e3692338121e1bf3540262 1878 TIGRFAM TIGR02457 TreS_Cterm: putative maltokinase 18 505 1.7E-120 T 11-10-2018 IPR012811 Trehalose synthase/probable maltokinase, C-terminal domain AMK58_15020 a5d4e99c13e3692338121e1bf3540262 1878 Gene3D G3DSA:2.60.40.10 523 629 7.6E-26 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_15020 a5d4e99c13e3692338121e1bf3540262 1878 SMART SM00642 652 999 3.2E-13 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMK58_15020 a5d4e99c13e3692338121e1bf3540262 1878 Pfam PF00128 Alpha amylase, catalytic domain 662 752 3.2E-15 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMK58_15020 a5d4e99c13e3692338121e1bf3540262 1878 SUPERFAMILY SSF51445 1314 1844 6.68E-145 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily AMK58_15020 a5d4e99c13e3692338121e1bf3540262 1878 SUPERFAMILY SSF56112 173 465 6.53E-13 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily AMK58_15020 a5d4e99c13e3692338121e1bf3540262 1878 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 542 603 4.1E-7 T 11-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 AMK58_15020 a5d4e99c13e3692338121e1bf3540262 1878 Gene3D G3DSA:3.20.20.80 640 1056 4.3E-185 T 11-10-2018 AMK58_15020 a5d4e99c13e3692338121e1bf3540262 1878 Gene3D G3DSA:1.10.10.760 984 1028 4.3E-185 T 11-10-2018 AMK58_11860 5ea1ee25cc8dd41f66654784301c58fa 398 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 16 26 - T 11-10-2018 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_11860 5ea1ee25cc8dd41f66654784301c58fa 398 Gene3D G3DSA:3.40.50.1260 8 395 4.6E-148 T 11-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_11860 5ea1ee25cc8dd41f66654784301c58fa 398 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 6 397 39.056 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_11860 5ea1ee25cc8dd41f66654784301c58fa 398 PRINTS PR00477 Phosphoglycerate kinase family signature 168 190 8.0E-78 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_11860 5ea1ee25cc8dd41f66654784301c58fa 398 PRINTS PR00477 Phosphoglycerate kinase family signature 373 390 8.0E-78 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_11860 5ea1ee25cc8dd41f66654784301c58fa 398 PRINTS PR00477 Phosphoglycerate kinase family signature 32 54 8.0E-78 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_11860 5ea1ee25cc8dd41f66654784301c58fa 398 PRINTS PR00477 Phosphoglycerate kinase family signature 350 361 8.0E-78 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_11860 5ea1ee25cc8dd41f66654784301c58fa 398 PRINTS PR00477 Phosphoglycerate kinase family signature 110 125 8.0E-78 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_11860 5ea1ee25cc8dd41f66654784301c58fa 398 PRINTS PR00477 Phosphoglycerate kinase family signature 191 210 8.0E-78 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_11860 5ea1ee25cc8dd41f66654784301c58fa 398 PRINTS PR00477 Phosphoglycerate kinase family signature 11 27 8.0E-78 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_11860 5ea1ee25cc8dd41f66654784301c58fa 398 PRINTS PR00477 Phosphoglycerate kinase family signature 313 338 8.0E-78 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_11860 5ea1ee25cc8dd41f66654784301c58fa 398 PRINTS PR00477 Phosphoglycerate kinase family signature 138 160 8.0E-78 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_11860 5ea1ee25cc8dd41f66654784301c58fa 398 SUPERFAMILY SSF53748 4 397 4.36E-147 T 11-10-2018 IPR036043 Phosphoglycerate kinase superfamily GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_11860 5ea1ee25cc8dd41f66654784301c58fa 398 Pfam PF00162 Phosphoglycerate kinase 7 387 4.1E-147 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_11860 5ea1ee25cc8dd41f66654784301c58fa 398 PIRSF PIRSF000724 1 398 7.0E-146 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_11860 5ea1ee25cc8dd41f66654784301c58fa 398 Gene3D G3DSA:3.40.50.1260 170 387 4.6E-148 T 11-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_01135 046fec1096f22dbb2ba70decc0c5dea3 247 Gene3D G3DSA:3.40.50.10790 1 148 3.6E-51 T 11-10-2018 IPR023228 S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal AMK58_01135 046fec1096f22dbb2ba70decc0c5dea3 247 SUPERFAMILY SSF102522 1 140 5.89E-50 T 11-10-2018 IPR023228 S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal AMK58_01135 046fec1096f22dbb2ba70decc0c5dea3 247 PIRSF PIRSF006779 1 236 5.1E-55 T 11-10-2018 IPR002747 SAM-dependent chlorinase/fluorinase AMK58_01135 046fec1096f22dbb2ba70decc0c5dea3 247 SUPERFAMILY SSF101852 154 235 2.48E-17 T 11-10-2018 IPR023227 S-adenosyl-l-methionine hydroxide adenosyltransferase, C-terminal AMK58_01135 046fec1096f22dbb2ba70decc0c5dea3 247 Pfam PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase 2 231 2.7E-70 T 11-10-2018 IPR002747 SAM-dependent chlorinase/fluorinase AMK58_01135 046fec1096f22dbb2ba70decc0c5dea3 247 Gene3D G3DSA:2.40.30.90 157 245 1.6E-19 T 11-10-2018 IPR023227 S-adenosyl-l-methionine hydroxide adenosyltransferase, C-terminal AMK58_26645 15306bf176659b93657e1d6bcfe44654 687 Gene3D G3DSA:3.30.450.20 52 309 5.0E-39 T 11-10-2018 AMK58_26645 15306bf176659b93657e1d6bcfe44654 687 SMART SM00304 338 391 2.5E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_26645 15306bf176659b93657e1d6bcfe44654 687 SUPERFAMILY SSF58104 366 680 1.01E-61 T 11-10-2018 AMK58_26645 15306bf176659b93657e1d6bcfe44654 687 Pfam PF00672 HAMP domain 340 387 5.6E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_26645 15306bf176659b93657e1d6bcfe44654 687 Gene3D G3DSA:3.30.450.20 61 211 5.0E-39 T 11-10-2018 AMK58_26645 15306bf176659b93657e1d6bcfe44654 687 Pfam PF02743 Cache domain 46 299 5.1E-21 T 11-10-2018 IPR033479 Double Cache domain 1 AMK58_26645 15306bf176659b93657e1d6bcfe44654 687 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 491 645 2.0E-29 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_26645 15306bf176659b93657e1d6bcfe44654 687 Gene3D G3DSA:1.10.287.950 403 686 9.5E-54 T 11-10-2018 AMK58_26645 15306bf176659b93657e1d6bcfe44654 687 SUPERFAMILY SSF103190 142 220 2.62E-7 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily AMK58_26645 15306bf176659b93657e1d6bcfe44654 687 Gene3D G3DSA:1.10.8.500 339 390 6.0E-16 T 11-10-2018 AMK58_26645 15306bf176659b93657e1d6bcfe44654 687 SMART SM00283 427 681 2.5E-45 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_07550 137508d9a54ad91a8762ecbd0183f544 796 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 21 141 2.1E-30 T 11-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMK58_07550 137508d9a54ad91a8762ecbd0183f544 796 Gene3D G3DSA:3.30.365.10 435 784 6.5E-142 T 11-10-2018 AMK58_07550 137508d9a54ad91a8762ecbd0183f544 796 SUPERFAMILY SSF54665 5 163 8.24E-49 T 11-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily AMK58_07550 137508d9a54ad91a8762ecbd0183f544 796 Gene3D G3DSA:3.30.365.10 198 295 6.7E-67 T 11-10-2018 AMK58_07550 137508d9a54ad91a8762ecbd0183f544 796 SUPERFAMILY SSF56003 133 788 3.53E-211 T 11-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 AMK58_07550 137508d9a54ad91a8762ecbd0183f544 796 Gene3D G3DSA:3.30.365.10 155 372 6.7E-67 T 11-10-2018 AMK58_07550 137508d9a54ad91a8762ecbd0183f544 796 Gene3D G3DSA:3.90.1170.50 1 141 1.2E-49 T 11-10-2018 AMK58_07550 137508d9a54ad91a8762ecbd0183f544 796 Gene3D G3DSA:3.30.365.10 468 637 6.5E-142 T 11-10-2018 AMK58_07550 137508d9a54ad91a8762ecbd0183f544 796 SMART SM01008 21 141 2.0E-58 T 11-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMK58_07550 137508d9a54ad91a8762ecbd0183f544 796 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 157 723 3.4E-181 T 11-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMK58_04935 9808b3f7105f84b45c40fd8cdb3577ce 551 Pfam PF13414 TPR repeat 183 224 1.0E-8 T 11-10-2018 AMK58_04935 9808b3f7105f84b45c40fd8cdb3577ce 551 Gene3D G3DSA:3.40.50.2000 371 526 1.0E-6 T 11-10-2018 AMK58_04935 9808b3f7105f84b45c40fd8cdb3577ce 551 SUPERFAMILY SSF53756 262 508 1.91E-23 T 11-10-2018 AMK58_04935 9808b3f7105f84b45c40fd8cdb3577ce 551 Pfam PF13374 Tetratricopeptide repeat 77 102 7.8E-4 T 11-10-2018 AMK58_04935 9808b3f7105f84b45c40fd8cdb3577ce 551 SUPERFAMILY SSF48452 7 228 3.03E-42 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_04935 9808b3f7105f84b45c40fd8cdb3577ce 551 SMART SM00028 108 141 0.022 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_04935 9808b3f7105f84b45c40fd8cdb3577ce 551 SMART SM00028 142 175 0.016 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_04935 9808b3f7105f84b45c40fd8cdb3577ce 551 SMART SM00028 40 73 0.0012 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_04935 9808b3f7105f84b45c40fd8cdb3577ce 551 SMART SM00028 176 209 4.7E-5 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_04935 9808b3f7105f84b45c40fd8cdb3577ce 551 SMART SM00028 74 107 0.095 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_04935 9808b3f7105f84b45c40fd8cdb3577ce 551 Gene3D G3DSA:1.25.40.10 176 245 3.5E-15 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_04935 9808b3f7105f84b45c40fd8cdb3577ce 551 Pfam PF13432 Tetratricopeptide repeat 16 74 5.5E-9 T 11-10-2018 AMK58_04935 9808b3f7105f84b45c40fd8cdb3577ce 551 Pfam PF13432 Tetratricopeptide repeat 117 174 6.6E-11 T 11-10-2018 AMK58_04935 9808b3f7105f84b45c40fd8cdb3577ce 551 Gene3D G3DSA:1.25.40.10 2 175 6.3E-39 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_11455 ee5c093aaf40c81ae1530f39a5b6edba 113 SUPERFAMILY SSF52833 5 106 3.22E-36 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_11455 ee5c093aaf40c81ae1530f39a5b6edba 113 Gene3D G3DSA:3.40.30.10 9 104 1.0E-34 T 11-10-2018 AMK58_11455 ee5c093aaf40c81ae1530f39a5b6edba 113 Pfam PF00462 Glutaredoxin 19 83 1.2E-19 T 11-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 AMK58_11455 ee5c093aaf40c81ae1530f39a5b6edba 113 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 7 103 5.6E-47 T 11-10-2018 IPR004480 Monothiol glutaredoxin-related AMK58_11455 ee5c093aaf40c81ae1530f39a5b6edba 113 PIRSF PIRSF005894 1 110 8.4E-51 T 11-10-2018 IPR014434 Monothiol glutaredoxin GO:0015036 Reactome: R-HSA-1362409 AMK58_16900 0892494974aacf1a55fda36a405a5639 436 Gene3D G3DSA:3.50.50.60 197 367 5.1E-7 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_16900 0892494974aacf1a55fda36a405a5639 436 Pfam PF01593 Flavin containing amine oxidoreductase 11 412 5.2E-27 T 11-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 AMK58_16900 0892494974aacf1a55fda36a405a5639 436 Gene3D G3DSA:3.50.50.60 2 85 2.6E-11 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_16900 0892494974aacf1a55fda36a405a5639 436 TIGRFAM TIGR03467 HpnE: squalene-associated FAD-dependent desaturase 4 412 4.9E-112 T 11-10-2018 IPR017830 Hydroxysqualene dehydroxylase HpnE MetaCyc: PWY-7072 AMK58_16900 0892494974aacf1a55fda36a405a5639 436 Gene3D G3DSA:3.30.9.10 195 366 5.1E-7 T 11-10-2018 AMK58_16900 0892494974aacf1a55fda36a405a5639 436 SUPERFAMILY SSF51905 3 412 1.09E-40 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_21005 024a2a22181cc796879b6d1bb15c8d8c 284 SUPERFAMILY SSF53335 5 280 2.07E-57 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_21005 024a2a22181cc796879b6d1bb15c8d8c 284 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 27 278 4.6E-82 T 11-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 AMK58_21005 024a2a22181cc796879b6d1bb15c8d8c 284 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 8 283 7.6E-62 T 11-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 AMK58_21005 024a2a22181cc796879b6d1bb15c8d8c 284 Pfam PF13847 Methyltransferase domain 117 209 6.8E-14 T 11-10-2018 IPR025714 Methyltransferase domain AMK58_21005 024a2a22181cc796879b6d1bb15c8d8c 284 Gene3D G3DSA:1.10.8.10 3 87 9.0E-22 T 11-10-2018 AMK58_21005 024a2a22181cc796879b6d1bb15c8d8c 284 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 5 282 44.132 T 11-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 AMK58_21005 024a2a22181cc796879b6d1bb15c8d8c 284 Gene3D G3DSA:3.40.50.150 88 284 2.3E-61 T 11-10-2018 AMK58_21005 024a2a22181cc796879b6d1bb15c8d8c 284 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 186 192 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMK58_17380 ad2c33361d4e1aa681c80461bd1f9fac 1048 Gene3D G3DSA:3.30.70.1320 134 327 0.0 T 11-10-2018 AMK58_17380 ad2c33361d4e1aa681c80461bd1f9fac 1048 Gene3D G3DSA:3.30.2090.10 706 800 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_17380 ad2c33361d4e1aa681c80461bd1f9fac 1048 Pfam PF00873 AcrB/AcrD/AcrF family 4 1014 3.7E-280 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_17380 ad2c33361d4e1aa681c80461bd1f9fac 1048 Gene3D G3DSA:3.30.70.1440 658 857 0.0 T 11-10-2018 AMK58_17380 ad2c33361d4e1aa681c80461bd1f9fac 1048 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.4E-69 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_17380 ad2c33361d4e1aa681c80461bd1f9fac 1048 PRINTS PR00702 Acriflavin resistance protein family signature 439 462 1.4E-69 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_17380 ad2c33361d4e1aa681c80461bd1f9fac 1048 PRINTS PR00702 Acriflavin resistance protein family signature 358 379 1.4E-69 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_17380 ad2c33361d4e1aa681c80461bd1f9fac 1048 PRINTS PR00702 Acriflavin resistance protein family signature 549 566 1.4E-69 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_17380 ad2c33361d4e1aa681c80461bd1f9fac 1048 PRINTS PR00702 Acriflavin resistance protein family signature 331 354 1.4E-69 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_17380 ad2c33361d4e1aa681c80461bd1f9fac 1048 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.4E-69 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_17380 ad2c33361d4e1aa681c80461bd1f9fac 1048 PRINTS PR00702 Acriflavin resistance protein family signature 464 487 1.4E-69 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_17380 ad2c33361d4e1aa681c80461bd1f9fac 1048 PRINTS PR00702 Acriflavin resistance protein family signature 386 410 1.4E-69 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_17380 ad2c33361d4e1aa681c80461bd1f9fac 1048 PRINTS PR00702 Acriflavin resistance protein family signature 615 629 1.4E-69 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_17380 ad2c33361d4e1aa681c80461bd1f9fac 1048 SUPERFAMILY SSF82693 134 325 2.62E-18 T 11-10-2018 AMK58_17380 ad2c33361d4e1aa681c80461bd1f9fac 1048 SUPERFAMILY SSF82693 40 135 1.75E-23 T 11-10-2018 AMK58_17380 ad2c33361d4e1aa681c80461bd1f9fac 1048 SUPERFAMILY SSF82714 182 265 8.63E-16 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_17380 ad2c33361d4e1aa681c80461bd1f9fac 1048 Gene3D G3DSA:3.30.2090.10 178 268 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_17380 ad2c33361d4e1aa681c80461bd1f9fac 1048 Gene3D G3DSA:3.30.70.1430 564 657 0.0 T 11-10-2018 AMK58_17380 ad2c33361d4e1aa681c80461bd1f9fac 1048 SUPERFAMILY SSF82714 707 799 3.4E-11 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_17380 ad2c33361d4e1aa681c80461bd1f9fac 1048 SUPERFAMILY SSF82866 289 491 1.96E-48 T 11-10-2018 AMK58_17380 ad2c33361d4e1aa681c80461bd1f9fac 1048 Gene3D G3DSA:1.20.1640.10 10 509 0.0 T 11-10-2018 AMK58_17380 ad2c33361d4e1aa681c80461bd1f9fac 1048 Gene3D G3DSA:1.20.1640.10 510 1013 0.0 T 11-10-2018 AMK58_17380 ad2c33361d4e1aa681c80461bd1f9fac 1048 SUPERFAMILY SSF82693 563 654 3.14E-15 T 11-10-2018 AMK58_17380 ad2c33361d4e1aa681c80461bd1f9fac 1048 Gene3D G3DSA:3.30.70.1430 40 808 0.0 T 11-10-2018 AMK58_17380 ad2c33361d4e1aa681c80461bd1f9fac 1048 SUPERFAMILY SSF82866 797 1018 8.63E-52 T 11-10-2018 AMK58_00390 32a1e59d08ae6b14a192188951c135bd 173 SUPERFAMILY SSF53155 13 80 1.61E-14 T 11-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 AMK58_00390 32a1e59d08ae6b14a192188951c135bd 173 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 14 155 38.237 T 11-10-2018 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 AMK58_00390 32a1e59d08ae6b14a192188951c135bd 173 Gene3D G3DSA:1.10.10.10 75 157 3.9E-30 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_00390 32a1e59d08ae6b14a192188951c135bd 173 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 76 155 9.2E-30 T 11-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 AMK58_00390 32a1e59d08ae6b14a192188951c135bd 173 SUPERFAMILY SSF46767 74 155 8.37E-27 T 11-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 AMK58_00390 32a1e59d08ae6b14a192188951c135bd 173 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 123 129 - T 11-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 AMK58_00390 32a1e59d08ae6b14a192188951c135bd 173 Gene3D G3DSA:3.30.160.70 13 70 2.1E-11 T 11-10-2018 AMK58_00390 32a1e59d08ae6b14a192188951c135bd 173 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 75 154 6.2E-27 T 11-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 AMK58_06805 cee3c4713eaf3647fc98ab0753b89d0c 74 Gene3D G3DSA:3.90.220.20 1 62 1.1E-9 T 11-10-2018 AMK58_06805 cee3c4713eaf3647fc98ab0753b89d0c 74 SUPERFAMILY SSF116734 1 58 1.55E-11 T 11-10-2018 AMK58_06805 cee3c4713eaf3647fc98ab0753b89d0c 74 Pfam PF01420 Type I restriction modification DNA specificity domain 2 41 5.5E-6 T 11-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 AMK58_19275 c2b215309adfa574c510fc3199d015cf 333 Gene3D G3DSA:3.60.15.10 36 330 1.2E-100 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMK58_19275 c2b215309adfa574c510fc3199d015cf 333 SUPERFAMILY SSF56281 39 324 5.24E-51 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMK58_19275 c2b215309adfa574c510fc3199d015cf 333 SMART SM00849 97 303 7.8E-17 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMK58_19275 c2b215309adfa574c510fc3199d015cf 333 Pfam PF00753 Metallo-beta-lactamase superfamily 96 290 7.5E-18 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMK58_24290 c02764667454369d4bf676cfb4f7bde3 352 Pfam PF05145 Transition state regulatory protein AbrB 34 349 4.8E-81 T 11-10-2018 IPR007820 AbrB family GO:0010468|GO:0016021 AMK58_24290 c02764667454369d4bf676cfb4f7bde3 352 PIRSF PIRSF038991 1 352 2.9E-69 T 11-10-2018 IPR007820 AbrB family GO:0010468|GO:0016021 AMK58_24290 c02764667454369d4bf676cfb4f7bde3 352 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 194 349 5.2E-39 T 11-10-2018 IPR017516 AbrB duplication AMK58_24290 c02764667454369d4bf676cfb4f7bde3 352 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 10 164 2.6E-34 T 11-10-2018 IPR017516 AbrB duplication AMK58_26990 f2e87d942e5e8b193a1ffd31fb3fa0b7 554 SUPERFAMILY SSF53756 253 508 3.66E-23 T 11-10-2018 AMK58_26990 f2e87d942e5e8b193a1ffd31fb3fa0b7 554 Pfam PF13432 Tetratricopeptide repeat 39 95 7.4E-5 T 11-10-2018 AMK58_26990 f2e87d942e5e8b193a1ffd31fb3fa0b7 554 Pfam PF07719 Tetratricopeptide repeat 104 133 1.8E-6 T 11-10-2018 IPR013105 Tetratricopeptide repeat 2 AMK58_26990 f2e87d942e5e8b193a1ffd31fb3fa0b7 554 Gene3D G3DSA:1.25.40.10 31 242 2.4E-42 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_26990 f2e87d942e5e8b193a1ffd31fb3fa0b7 554 SMART SM00028 33 66 38.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_26990 f2e87d942e5e8b193a1ffd31fb3fa0b7 554 SMART SM00028 169 202 7.3E-4 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_26990 f2e87d942e5e8b193a1ffd31fb3fa0b7 554 SMART SM00028 101 134 3.1E-4 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_26990 f2e87d942e5e8b193a1ffd31fb3fa0b7 554 SMART SM00028 67 100 110.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_26990 f2e87d942e5e8b193a1ffd31fb3fa0b7 554 SMART SM00028 135 168 63.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_26990 f2e87d942e5e8b193a1ffd31fb3fa0b7 554 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 414 475 1.4E-5 T 11-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 AMK58_26990 f2e87d942e5e8b193a1ffd31fb3fa0b7 554 Gene3D G3DSA:3.40.50.2000 400 494 1.7E-9 T 11-10-2018 AMK58_26990 f2e87d942e5e8b193a1ffd31fb3fa0b7 554 SUPERFAMILY SSF48452 37 230 4.32E-34 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_26990 f2e87d942e5e8b193a1ffd31fb3fa0b7 554 Pfam PF14559 Tetratricopeptide repeat 145 203 1.2E-7 T 11-10-2018 AMK58_27120 916d740cc52d1298e3b61b94b035bf5b 256 Gene3D G3DSA:3.20.20.70 1 255 1.0E-107 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_27120 916d740cc52d1298e3b61b94b035bf5b 256 SUPERFAMILY SSF110399 3 241 1.05E-80 T 11-10-2018 AMK58_27120 916d740cc52d1298e3b61b94b035bf5b 256 Pfam PF05690 Thiazole biosynthesis protein ThiG 7 249 4.3E-104 T 11-10-2018 IPR033983 Thiazole synthase ThiG KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 AMK58_27120 916d740cc52d1298e3b61b94b035bf5b 256 Hamap MF_00443 Thiazole synthase [thiG]. 4 255 41.913 T 11-10-2018 IPR008867 Thiazole synthase GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 AMK58_25380 05c8b4e17b19612e61eb05a4ea924e4a 316 SUPERFAMILY SSF103088 205 309 2.22E-18 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMK58_25380 05c8b4e17b19612e61eb05a4ea924e4a 316 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 17 64 1.0E-16 T 11-10-2018 IPR025713 Motility protein B, N-terminal domain AMK58_25380 05c8b4e17b19612e61eb05a4ea924e4a 316 Gene3D G3DSA:3.30.1330.60 154 316 3.8E-43 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMK58_25380 05c8b4e17b19612e61eb05a4ea924e4a 316 Pfam PF00691 OmpA family 207 292 4.1E-12 T 11-10-2018 IPR006665 OmpA-like domain AMK58_06630 8586fd880091be2f0ff5e24e892e1f64 629 SMART SM00448 504 617 3.4E-30 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_06630 8586fd880091be2f0ff5e24e892e1f64 629 Pfam PF00072 Response regulator receiver domain 506 617 9.2E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_06630 8586fd880091be2f0ff5e24e892e1f64 629 SUPERFAMILY SSF52172 504 622 1.42E-32 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_06630 8586fd880091be2f0ff5e24e892e1f64 629 Gene3D G3DSA:3.40.50.2300 501 627 1.5E-30 T 11-10-2018 AMK58_23965 662d820b11a5a7239b8fb66f90d8ff3b 265 SUPERFAMILY SSF46785 4 68 3.62E-11 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_23965 662d820b11a5a7239b8fb66f90d8ff3b 265 Pfam PF00455 DeoR C terminal sensor domain 76 232 2.6E-52 T 11-10-2018 IPR014036 DeoR C-terminal sensor domain AMK58_23965 662d820b11a5a7239b8fb66f90d8ff3b 265 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 25 39 1.9E-8 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMK58_23965 662d820b11a5a7239b8fb66f90d8ff3b 265 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 39 57 1.9E-8 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMK58_23965 662d820b11a5a7239b8fb66f90d8ff3b 265 Gene3D G3DSA:1.10.10.10 2 68 4.0E-5 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_23965 662d820b11a5a7239b8fb66f90d8ff3b 265 SUPERFAMILY SSF100950 76 234 5.8E-29 T 11-10-2018 IPR037171 NagB/RpiA transferase-like AMK58_23965 662d820b11a5a7239b8fb66f90d8ff3b 265 SMART SM01134 73 234 9.7E-70 T 11-10-2018 AMK58_23965 662d820b11a5a7239b8fb66f90d8ff3b 265 SMART SM00420 7 59 4.3E-14 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMK58_23965 662d820b11a5a7239b8fb66f90d8ff3b 265 Pfam PF08220 DeoR-like helix-turn-helix domain 7 59 1.4E-14 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMK58_00885 a711c7cda96c2bc685b8d79704873235 680 Pfam PF13432 Tetratricopeptide repeat 186 248 0.0016 T 11-10-2018 AMK58_00885 a711c7cda96c2bc685b8d79704873235 680 Pfam PF13432 Tetratricopeptide repeat 299 348 4.6E-5 T 11-10-2018 AMK58_00885 a711c7cda96c2bc685b8d79704873235 680 Pfam PF13432 Tetratricopeptide repeat 16 72 0.001 T 11-10-2018 AMK58_00885 a711c7cda96c2bc685b8d79704873235 680 Pfam PF13432 Tetratricopeptide repeat 76 139 4.1E-6 T 11-10-2018 AMK58_00885 a711c7cda96c2bc685b8d79704873235 680 SUPERFAMILY SSF53756 402 672 2.17E-20 T 11-10-2018 AMK58_00885 a711c7cda96c2bc685b8d79704873235 680 Gene3D G3DSA:1.25.40.10 320 383 1.2E-9 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_00885 a711c7cda96c2bc685b8d79704873235 680 SMART SM00028 282 315 4.1 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_00885 a711c7cda96c2bc685b8d79704873235 680 SMART SM00028 72 105 27.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_00885 a711c7cda96c2bc685b8d79704873235 680 SMART SM00028 316 349 24.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_00885 a711c7cda96c2bc685b8d79704873235 680 SMART SM00028 4 37 360.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_00885 a711c7cda96c2bc685b8d79704873235 680 SMART SM00028 106 139 13.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_00885 a711c7cda96c2bc685b8d79704873235 680 SMART SM00028 38 71 39.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_00885 a711c7cda96c2bc685b8d79704873235 680 SMART SM00028 248 281 0.5 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_00885 a711c7cda96c2bc685b8d79704873235 680 Gene3D G3DSA:1.25.40.10 181 319 2.0E-19 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_00885 a711c7cda96c2bc685b8d79704873235 680 SUPERFAMILY SSF48452 51 375 2.53E-40 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_00885 a711c7cda96c2bc685b8d79704873235 680 Gene3D G3DSA:1.25.40.10 3 175 7.2E-23 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_00885 a711c7cda96c2bc685b8d79704873235 680 Gene3D G3DSA:3.40.50.2000 577 666 3.9E-7 T 11-10-2018 AMK58_12270 1945ec5aef6f373684a86e9d77ac57c1 280 Pfam PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal 5 70 1.7E-23 T 11-10-2018 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117 AMK58_12270 1945ec5aef6f373684a86e9d77ac57c1 280 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 137 165 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AMK58_12270 1945ec5aef6f373684a86e9d77ac57c1 280 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 178 213 8.8E-12 T 11-10-2018 IPR001451 Hexapeptide repeat AMK58_12270 1945ec5aef6f373684a86e9d77ac57c1 280 Gene3D G3DSA:1.10.166.10 3 71 1.8E-26 T 11-10-2018 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily KEGG: 00300+2.3.1.117 AMK58_12270 1945ec5aef6f373684a86e9d77ac57c1 280 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 136 169 0.0024 T 11-10-2018 IPR001451 Hexapeptide repeat AMK58_12270 1945ec5aef6f373684a86e9d77ac57c1 280 Gene3D G3DSA:2.160.10.10 90 265 1.5E-52 T 11-10-2018 AMK58_12270 1945ec5aef6f373684a86e9d77ac57c1 280 Hamap MF_00811 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 3 280 55.715 T 11-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 AMK58_12270 1945ec5aef6f373684a86e9d77ac57c1 280 SUPERFAMILY SSF51161 7 264 9.15E-64 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily AMK58_12270 1945ec5aef6f373684a86e9d77ac57c1 280 TIGRFAM TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 6 279 3.0E-128 T 11-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 AMK58_16610 9970385b23f766433134c4a4f4bb1583 600 Hamap MF_02094 Phosphogluconate dehydratase [edd]. 4 600 56.83 T 11-10-2018 AMK58_16610 9970385b23f766433134c4a4f4bb1583 600 SUPERFAMILY SSF52016 418 598 4.16E-60 T 11-10-2018 AMK58_16610 9970385b23f766433134c4a4f4bb1583 600 SUPERFAMILY SSF143975 4 417 3.4E-135 T 11-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMK58_16610 9970385b23f766433134c4a4f4bb1583 600 TIGRFAM TIGR01196 edd: phosphogluconate dehydratase 5 599 5.3E-284 T 11-10-2018 IPR004786 6-phosphogluconate dehydratase GO:0004456|GO:0009255 KEGG: 00030+4.2.1.12 AMK58_16610 9970385b23f766433134c4a4f4bb1583 600 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 158 168 - T 11-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMK58_16610 9970385b23f766433134c4a4f4bb1583 600 Pfam PF00920 Dehydratase family 70 596 3.5E-164 T 11-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMK58_16610 9970385b23f766433134c4a4f4bb1583 600 Gene3D G3DSA:3.50.30.80 418 567 3.5E-54 T 11-10-2018 AMK58_16610 9970385b23f766433134c4a4f4bb1583 600 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 504 515 - T 11-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMK58_22540 9fa36ebfd1e0a73f25adbb72f590af5c 526 SUPERFAMILY SSF52540 270 522 2.54E-44 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_22540 9fa36ebfd1e0a73f25adbb72f590af5c 526 Pfam PF13428 Tetratricopeptide repeat 103 139 3.5E-5 T 11-10-2018 AMK58_22540 9fa36ebfd1e0a73f25adbb72f590af5c 526 Gene3D G3DSA:1.25.40.10 125 255 2.5E-12 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_22540 9fa36ebfd1e0a73f25adbb72f590af5c 526 Gene3D G3DSA:3.40.50.300 266 526 5.2E-57 T 11-10-2018 AMK58_22540 9fa36ebfd1e0a73f25adbb72f590af5c 526 SUPERFAMILY SSF48452 26 224 3.19E-24 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_22540 9fa36ebfd1e0a73f25adbb72f590af5c 526 Pfam PF13432 Tetratricopeptide repeat 172 225 1.3E-4 T 11-10-2018 AMK58_22540 9fa36ebfd1e0a73f25adbb72f590af5c 526 Pfam PF13432 Tetratricopeptide repeat 35 97 1.8E-6 T 11-10-2018 AMK58_22540 9fa36ebfd1e0a73f25adbb72f590af5c 526 Gene3D G3DSA:1.25.40.10 14 124 1.0E-20 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_22540 9fa36ebfd1e0a73f25adbb72f590af5c 526 SMART SM00028 131 164 180.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_22540 9fa36ebfd1e0a73f25adbb72f590af5c 526 SMART SM00028 97 130 0.66 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_22540 9fa36ebfd1e0a73f25adbb72f590af5c 526 SMART SM00028 29 62 110.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_22540 9fa36ebfd1e0a73f25adbb72f590af5c 526 SMART SM00028 200 233 86.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_22540 9fa36ebfd1e0a73f25adbb72f590af5c 526 SMART SM00028 63 96 0.44 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_22540 9fa36ebfd1e0a73f25adbb72f590af5c 526 Pfam PF13469 Sulfotransferase family 273 468 7.7E-33 T 11-10-2018 AMK58_08240 d916c75ffb93ba0140bce4b1deac83f4 112 Hamap MF_00380 Integration host factor subunit alpha [ihfA]. 4 100 28.258 T 11-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 AMK58_08240 d916c75ffb93ba0140bce4b1deac83f4 112 Pfam PF00216 Bacterial DNA-binding protein 6 95 7.3E-26 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMK58_08240 d916c75ffb93ba0140bce4b1deac83f4 112 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 51 70 - T 11-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 AMK58_08240 d916c75ffb93ba0140bce4b1deac83f4 112 Gene3D G3DSA:4.10.520.10 4 102 1.3E-29 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 AMK58_08240 d916c75ffb93ba0140bce4b1deac83f4 112 TIGRFAM TIGR00987 himA: integration host factor, alpha subunit 5 97 9.3E-42 T 11-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 AMK58_08240 d916c75ffb93ba0140bce4b1deac83f4 112 SMART SM00411 6 95 9.8E-34 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMK58_08240 d916c75ffb93ba0140bce4b1deac83f4 112 PRINTS PR01727 Prokaryotic integration host factor signature 63 76 2.0E-12 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMK58_08240 d916c75ffb93ba0140bce4b1deac83f4 112 PRINTS PR01727 Prokaryotic integration host factor signature 79 93 2.0E-12 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMK58_08240 d916c75ffb93ba0140bce4b1deac83f4 112 PRINTS PR01727 Prokaryotic integration host factor signature 45 60 2.0E-12 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMK58_08240 d916c75ffb93ba0140bce4b1deac83f4 112 SUPERFAMILY SSF47729 6 96 2.21E-26 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 AMK58_00335 41dd81d55d0edd642b89aae257ca33d5 183 Gene3D G3DSA:3.30.160.150 45 183 4.2E-37 T 11-10-2018 AMK58_00335 41dd81d55d0edd642b89aae257ca33d5 183 Pfam PF04390 Lipopolysaccharide-assembly 54 174 5.0E-8 T 11-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 AMK58_06970 779cf182b3a1317bed80d0df5f9d49e4 207 SUPERFAMILY SSF51391 4 194 3.66E-51 T 11-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMK58_06970 779cf182b3a1317bed80d0df5f9d49e4 207 Gene3D G3DSA:3.20.20.70 3 203 7.6E-58 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_06970 779cf182b3a1317bed80d0df5f9d49e4 207 Pfam PF02581 Thiamine monophosphate synthase 10 186 1.4E-42 T 11-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMK58_08825 fb7c3887e6960a31f1f01dd2d2f2f43c 558 SUPERFAMILY SSF52540 331 522 7.31E-45 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_08825 fb7c3887e6960a31f1f01dd2d2f2f43c 558 Pfam PF00005 ABC transporter 24 193 3.7E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_08825 fb7c3887e6960a31f1f01dd2d2f2f43c 558 SUPERFAMILY SSF52540 10 246 3.65E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_08825 fb7c3887e6960a31f1f01dd2d2f2f43c 558 ProSitePatterns PS00211 ABC transporters family signature. 165 179 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_08825 fb7c3887e6960a31f1f01dd2d2f2f43c 558 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 5 555 9.6E-298 T 11-10-2018 IPR022374 Energy-dependent translational throttle protein EttA GO:0045900 AMK58_08825 fb7c3887e6960a31f1f01dd2d2f2f43c 558 Pfam PF12848 ABC transporter 232 299 7.5E-13 T 11-10-2018 IPR032781 ABC-transporter extension domain AMK58_08825 fb7c3887e6960a31f1f01dd2d2f2f43c 558 SMART SM00382 33 234 1.6E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_08825 fb7c3887e6960a31f1f01dd2d2f2f43c 558 SMART SM00382 350 526 8.2E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_08825 fb7c3887e6960a31f1f01dd2d2f2f43c 558 Gene3D G3DSA:3.40.50.300 4 287 8.0E-83 T 11-10-2018 AMK58_08825 fb7c3887e6960a31f1f01dd2d2f2f43c 558 Gene3D G3DSA:3.40.50.300 289 556 5.8E-70 T 11-10-2018 AMK58_08825 fb7c3887e6960a31f1f01dd2d2f2f43c 558 Pfam PF00005 ABC transporter 342 475 9.4E-23 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_04510 0183e52fabc369885c741ae5083528df 723 Pfam PF01274 Malate synthase 18 695 3.6E-169 T 11-10-2018 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AMK58_04510 0183e52fabc369885c741ae5083528df 723 Gene3D G3DSA:1.20.1220.12 581 723 5.6E-76 T 11-10-2018 AMK58_04510 0183e52fabc369885c741ae5083528df 723 TIGRFAM TIGR01345 malate_syn_G: malate synthase G 4 720 0.0 T 11-10-2018 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AMK58_04510 0183e52fabc369885c741ae5083528df 723 Hamap MF_00641 Malate synthase G [glcB]. 1 723 415.485 T 11-10-2018 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AMK58_04510 0183e52fabc369885c741ae5083528df 723 Gene3D G3DSA:2.170.170.11 135 264 9.0E-284 T 11-10-2018 IPR023310 Malate synthase G, beta sub-domain GO:0004474 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AMK58_04510 0183e52fabc369885c741ae5083528df 723 SUPERFAMILY SSF51645 2 720 0.0 T 11-10-2018 IPR011076 Malate synthase-like superfamily GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AMK58_04510 0183e52fabc369885c741ae5083528df 723 Gene3D G3DSA:3.20.20.360 7 578 9.0E-284 T 11-10-2018 AMK58_21515 5208df1abdee61f7fb842445b9e95c09 62 Gene3D G3DSA:3.30.429.10 1 61 4.1E-24 T 11-10-2018 IPR014347 Tautomerase/MIF superfamily AMK58_21515 5208df1abdee61f7fb842445b9e95c09 62 Pfam PF01361 Tautomerase enzyme 2 57 1.5E-17 T 11-10-2018 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 AMK58_21515 5208df1abdee61f7fb842445b9e95c09 62 SUPERFAMILY SSF55331 1 60 1.23E-19 T 11-10-2018 IPR014347 Tautomerase/MIF superfamily AMK58_15470 9746af74e495bc19d2aacf655a10d6fa 287 SUPERFAMILY SSF102886 8 287 2.22E-114 T 11-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMK58_15470 9746af74e495bc19d2aacf655a10d6fa 287 Hamap MF_00333 Oxygen-dependent coproporphyrinogen-III oxidase [hemF]. 5 287 51.985 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMK58_15470 9746af74e495bc19d2aacf655a10d6fa 287 PIRSF PIRSF000166 2 287 3.1E-113 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMK58_15470 9746af74e495bc19d2aacf655a10d6fa 287 Pfam PF01218 Coproporphyrinogen III oxidase 13 286 8.6E-93 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMK58_15470 9746af74e495bc19d2aacf655a10d6fa 287 Gene3D G3DSA:3.40.1500.10 1 287 3.4E-106 T 11-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMK58_15470 9746af74e495bc19d2aacf655a10d6fa 287 PRINTS PR00073 Coprogen oxidase signature 135 157 3.4E-44 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMK58_15470 9746af74e495bc19d2aacf655a10d6fa 287 PRINTS PR00073 Coprogen oxidase signature 272 287 3.4E-44 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMK58_15470 9746af74e495bc19d2aacf655a10d6fa 287 PRINTS PR00073 Coprogen oxidase signature 244 271 3.4E-44 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMK58_15470 9746af74e495bc19d2aacf655a10d6fa 287 PRINTS PR00073 Coprogen oxidase signature 172 201 3.4E-44 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMK58_15470 9746af74e495bc19d2aacf655a10d6fa 287 PRINTS PR00073 Coprogen oxidase signature 43 59 3.4E-44 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMK58_15470 9746af74e495bc19d2aacf655a10d6fa 287 ProSitePatterns PS01021 Coproporphyrinogen III oxidase signature. 176 200 - T 11-10-2018 IPR018375 Coproporphyrinogen III oxidase, conserved site GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMK58_05150 f22fd1c8ae1633f048a430eae866dbe5 590 SUPERFAMILY SSF48452 15 231 3.48E-33 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_05150 f22fd1c8ae1633f048a430eae866dbe5 590 SUPERFAMILY SSF53756 330 574 3.08E-23 T 11-10-2018 AMK58_05150 f22fd1c8ae1633f048a430eae866dbe5 590 Pfam PF13432 Tetratricopeptide repeat 9 69 1.9E-6 T 11-10-2018 AMK58_05150 f22fd1c8ae1633f048a430eae866dbe5 590 Pfam PF13432 Tetratricopeptide repeat 179 235 1.9E-8 T 11-10-2018 AMK58_05150 f22fd1c8ae1633f048a430eae866dbe5 590 Pfam PF13432 Tetratricopeptide repeat 112 173 8.4E-5 T 11-10-2018 AMK58_05150 f22fd1c8ae1633f048a430eae866dbe5 590 Pfam PF13432 Tetratricopeptide repeat 249 291 0.0089 T 11-10-2018 AMK58_05150 f22fd1c8ae1633f048a430eae866dbe5 590 Gene3D G3DSA:1.25.40.10 241 295 2.4E-7 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_05150 f22fd1c8ae1633f048a430eae866dbe5 590 SMART SM00028 208 240 60.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_05150 f22fd1c8ae1633f048a430eae866dbe5 590 SMART SM00028 106 139 10.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_05150 f22fd1c8ae1633f048a430eae866dbe5 590 SMART SM00028 140 173 30.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_05150 f22fd1c8ae1633f048a430eae866dbe5 590 SMART SM00028 174 207 0.0048 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_05150 f22fd1c8ae1633f048a430eae866dbe5 590 SMART SM00028 72 105 24.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_05150 f22fd1c8ae1633f048a430eae866dbe5 590 SMART SM00028 38 71 47.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_05150 f22fd1c8ae1633f048a430eae866dbe5 590 SMART SM00028 4 37 290.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_05150 f22fd1c8ae1633f048a430eae866dbe5 590 SMART SM00028 242 275 0.002 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_05150 f22fd1c8ae1633f048a430eae866dbe5 590 Gene3D G3DSA:3.40.50.2000 490 577 2.3E-7 T 11-10-2018 AMK58_05150 f22fd1c8ae1633f048a430eae866dbe5 590 Gene3D G3DSA:1.25.40.10 99 170 1.4E-10 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_05150 f22fd1c8ae1633f048a430eae866dbe5 590 Gene3D G3DSA:1.25.40.10 171 238 9.2E-15 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_05150 f22fd1c8ae1633f048a430eae866dbe5 590 Gene3D G3DSA:1.25.40.10 3 98 3.0E-15 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_05150 f22fd1c8ae1633f048a430eae866dbe5 590 SUPERFAMILY SSF48452 210 293 9.66E-12 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_26130 a3ff43fa4438542c1cb1dd39cc1bcd24 331 Gene3D G3DSA:1.10.3470.10 1 330 1.6E-96 T 11-10-2018 IPR037294 ABC transporter, BtuC-like AMK58_26130 a3ff43fa4438542c1cb1dd39cc1bcd24 331 Pfam PF01032 FecCD transport family 9 324 6.6E-83 T 11-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 AMK58_26130 a3ff43fa4438542c1cb1dd39cc1bcd24 331 SUPERFAMILY SSF81345 5 323 7.72E-74 T 11-10-2018 IPR037294 ABC transporter, BtuC-like AMK58_20470 ba696683a6fb84deffa07fdff8f569fc 266 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 27 266 1.7E-82 T 11-10-2018 IPR004872 Lipoprotein NlpA family AMK58_20470 ba696683a6fb84deffa07fdff8f569fc 266 Gene3D G3DSA:3.40.190.10 112 216 2.0E-102 T 11-10-2018 AMK58_20470 ba696683a6fb84deffa07fdff8f569fc 266 Pfam PF03180 NLPA lipoprotein 31 266 3.3E-99 T 11-10-2018 IPR004872 Lipoprotein NlpA family AMK58_20470 ba696683a6fb84deffa07fdff8f569fc 266 Gene3D G3DSA:3.40.190.10 31 263 2.0E-102 T 11-10-2018 AMK58_20470 ba696683a6fb84deffa07fdff8f569fc 266 SUPERFAMILY SSF53850 31 266 9.77E-89 T 11-10-2018 AMK58_20470 ba696683a6fb84deffa07fdff8f569fc 266 PIRSF PIRSF002854 2 266 4.4E-107 T 11-10-2018 IPR004872 Lipoprotein NlpA family AMK58_23415 d349df47fe7e36c86ea10776c6776d2b 607 ProSitePatterns PS00505 Phosphoenolpyruvate carboxykinase (GTP) signature. 262 270 - T 11-10-2018 IPR018091 Phosphoenolpyruvate carboxykinase, GTP-utilising, conserved site GO:0004613 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 AMK58_23415 d349df47fe7e36c86ea10776c6776d2b 607 SUPERFAMILY SSF68923 4 237 9.42E-106 T 11-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 AMK58_23415 d349df47fe7e36c86ea10776c6776d2b 607 Hamap MF_00452 Phosphoenolpyruvate carboxykinase [GTP] [pckG]. 3 598 50.453 T 11-10-2018 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising GO:0004611|GO:0005525|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 AMK58_23415 d349df47fe7e36c86ea10776c6776d2b 607 Gene3D G3DSA:3.90.228.20 238 590 5.1E-264 T 11-10-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 AMK58_23415 d349df47fe7e36c86ea10776c6776d2b 607 Gene3D G3DSA:3.40.449.10 14 237 5.1E-264 T 11-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 AMK58_23415 d349df47fe7e36c86ea10776c6776d2b 607 Pfam PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain 15 234 4.2E-105 T 11-10-2018 IPR035078 Phosphoenolpyruvate carboxykinase, GTP-utilising, N-terminal GO:0004611|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 AMK58_23415 d349df47fe7e36c86ea10776c6776d2b 607 SUPERFAMILY SSF53795 238 598 5.26E-156 T 11-10-2018 AMK58_23415 d349df47fe7e36c86ea10776c6776d2b 607 Pfam PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain 238 597 2.7E-167 T 11-10-2018 IPR035077 Phosphoenolpyruvate carboxykinase, GTP-utilising, C-terminal GO:0004611|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 AMK58_23415 d349df47fe7e36c86ea10776c6776d2b 607 PIRSF PIRSF001348 1 601 9.2E-278 T 11-10-2018 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising GO:0004611|GO:0005525|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 AMK58_23415 d349df47fe7e36c86ea10776c6776d2b 607 Gene3D G3DSA:2.170.8.10 50 393 5.1E-264 T 11-10-2018 AMK58_06475 3b1c98d48d67b1e336a2133c2c0b2842 309 Pfam PF12706 Beta-lactamase superfamily domain 51 276 1.5E-47 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMK58_06475 3b1c98d48d67b1e336a2133c2c0b2842 309 SUPERFAMILY SSF56281 3 309 2.66E-56 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMK58_06475 3b1c98d48d67b1e336a2133c2c0b2842 309 TIGRFAM TIGR02108 PQQ_syn_pqqB: coenzyme PQQ biosynthesis protein B 4 309 1.3E-117 T 11-10-2018 IPR011842 Coenzyme PQQ biosynthesis protein B AMK58_06475 3b1c98d48d67b1e336a2133c2c0b2842 309 Gene3D G3DSA:3.60.15.10 1 309 1.6E-80 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMK58_06475 3b1c98d48d67b1e336a2133c2c0b2842 309 Hamap MF_00653 Coenzyme PQQ synthesis protein B [pqqB]. 1 309 149.813 T 11-10-2018 IPR011842 Coenzyme PQQ biosynthesis protein B AMK58_08500 e817beced1f1bb900ca4a74a698cc47f 213 PIRSF PIRSF015617 16 213 5.1E-70 T 11-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 AMK58_08500 e817beced1f1bb900ca4a74a698cc47f 213 TIGRFAM TIGR00708 cobA: cob(I)yrinic acid a,c-diamide adenosyltransferase 41 213 3.6E-70 T 11-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 AMK58_08500 e817beced1f1bb900ca4a74a698cc47f 213 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 42 213 8.5E-64 T 11-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 AMK58_08500 e817beced1f1bb900ca4a74a698cc47f 213 Gene3D G3DSA:3.40.50.300 21 213 6.7E-70 T 11-10-2018 AMK58_08500 e817beced1f1bb900ca4a74a698cc47f 213 SUPERFAMILY SSF52540 23 213 6.25E-73 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_01690 aeef27da197fd013194b731e84c99eb0 195 SMART SM00448 4 121 1.9E-4 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_01690 aeef27da197fd013194b731e84c99eb0 195 SUPERFAMILY SSF52172 3 137 4.13E-18 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_01690 aeef27da197fd013194b731e84c99eb0 195 Pfam PF00072 Response regulator receiver domain 7 120 7.3E-10 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_01690 aeef27da197fd013194b731e84c99eb0 195 Gene3D G3DSA:1.10.10.60 143 194 8.6E-14 T 11-10-2018 AMK58_01690 aeef27da197fd013194b731e84c99eb0 195 Gene3D G3DSA:3.40.50.2300 4 142 8.3E-16 T 11-10-2018 AMK58_01690 aeef27da197fd013194b731e84c99eb0 195 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 156 173 4.2E-9 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMK58_01690 aeef27da197fd013194b731e84c99eb0 195 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 173 193 4.2E-9 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMK58_01690 aeef27da197fd013194b731e84c99eb0 195 SUPERFAMILY SSF46689 143 192 4.35E-12 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_01690 aeef27da197fd013194b731e84c99eb0 195 Pfam PF02954 Bacterial regulatory protein, Fis family 151 185 1.4E-11 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMK58_07085 894083aa5eea56a23c8e6049042ccc7b 217 Pfam PF01730 UreF 25 174 2.0E-34 T 11-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 AMK58_07085 894083aa5eea56a23c8e6049042ccc7b 217 Gene3D G3DSA:1.10.4190.10 1 195 4.2E-55 T 11-10-2018 IPR038277 UreF domain superfamily AMK58_07085 894083aa5eea56a23c8e6049042ccc7b 217 PIRSF PIRSF009467 1 217 2.6E-58 T 11-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 AMK58_07085 894083aa5eea56a23c8e6049042ccc7b 217 Hamap MF_01385 Urease accessory protein UreF [ureF]. 1 217 27.768 T 11-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 AMK58_16235 73aa535983a10fc4dbb62b1f4456a678 315 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 142 190 - T 11-10-2018 IPR001505 Copper centre Cu(A) GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_16235 73aa535983a10fc4dbb62b1f4456a678 315 Gene3D G3DSA:1.10.760.10 212 307 1.3E-28 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_16235 73aa535983a10fc4dbb62b1f4456a678 315 SUPERFAMILY SSF46626 216 307 1.19E-16 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_16235 73aa535983a10fc4dbb62b1f4456a678 315 TIGRFAM TIGR02866 CoxB: cytochrome c oxidase, subunit II 14 206 9.1E-48 T 11-10-2018 IPR014222 Cytochrome c oxidase, subunit II GO:0016021|GO:0016491 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_16235 73aa535983a10fc4dbb62b1f4456a678 315 SUPERFAMILY SSF81464 6 93 1.08E-9 T 11-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_16235 73aa535983a10fc4dbb62b1f4456a678 315 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 123 190 1.6E-14 T 11-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_16235 73aa535983a10fc4dbb62b1f4456a678 315 Gene3D G3DSA:1.10.287.90 7 90 1.2E-7 T 11-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_16235 73aa535983a10fc4dbb62b1f4456a678 315 Pfam PF00034 Cytochrome c 216 307 3.7E-9 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_16235 73aa535983a10fc4dbb62b1f4456a678 315 Gene3D G3DSA:2.60.40.420 98 209 2.6E-37 T 11-10-2018 IPR008972 Cupredoxin AMK58_16235 73aa535983a10fc4dbb62b1f4456a678 315 SUPERFAMILY SSF49503 93 248 1.76E-42 T 11-10-2018 IPR008972 Cupredoxin AMK58_14730 f0c5fb5c20c48bfd7ec286376926f7cf 482 PRINTS PR00131 Glycosyl hydrolase family 1 signature 402 413 3.3E-20 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMK58_14730 f0c5fb5c20c48bfd7ec286376926f7cf 482 PRINTS PR00131 Glycosyl hydrolase family 1 signature 381 389 3.3E-20 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMK58_14730 f0c5fb5c20c48bfd7ec286376926f7cf 482 PRINTS PR00131 Glycosyl hydrolase family 1 signature 447 459 3.3E-20 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMK58_14730 f0c5fb5c20c48bfd7ec286376926f7cf 482 PRINTS PR00131 Glycosyl hydrolase family 1 signature 423 440 3.3E-20 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMK58_14730 f0c5fb5c20c48bfd7ec286376926f7cf 482 PRINTS PR00131 Glycosyl hydrolase family 1 signature 318 332 3.3E-20 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMK58_14730 f0c5fb5c20c48bfd7ec286376926f7cf 482 SUPERFAMILY SSF51445 39 479 3.9E-154 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily AMK58_14730 f0c5fb5c20c48bfd7ec286376926f7cf 482 Gene3D G3DSA:3.20.20.80 34 479 6.0E-160 T 11-10-2018 AMK58_14730 f0c5fb5c20c48bfd7ec286376926f7cf 482 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 27 9.6E-4 T 11-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal AMK58_14730 f0c5fb5c20c48bfd7ec286376926f7cf 482 Pfam PF00232 Glycosyl hydrolase family 1 39 477 1.4E-142 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMK58_14730 f0c5fb5c20c48bfd7ec286376926f7cf 482 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 44 58 - T 11-10-2018 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site AMK58_14730 f0c5fb5c20c48bfd7ec286376926f7cf 482 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 381 389 - T 11-10-2018 IPR018120 Glycoside hydrolase family 1, active site AMK58_14730 f0c5fb5c20c48bfd7ec286376926f7cf 482 TIGRFAM TIGR03356 BGL: beta-galactosidase 40 469 6.8E-173 T 11-10-2018 IPR017736 Glycoside hydrolase, family 1, beta-glucosidase GO:0008422|GO:0030245 KEGG: 00460+3.2.1.21|KEGG: 00500+3.2.1.21|KEGG: 00940+3.2.1.21|MetaCyc: PWY-3121|MetaCyc: PWY-5176|MetaCyc: PWY-6002|MetaCyc: PWY-6788|MetaCyc: PWY-7091|MetaCyc: PWY-7092|MetaCyc: PWY-7913 AMK58_24260 463d3f06d73695ce3601c03f41cb313b 909 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 788 896 1.7E-23 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_24260 463d3f06d73695ce3601c03f41cb313b 909 SMART SM00387 786 898 2.1E-36 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_24260 463d3f06d73695ce3601c03f41cb313b 909 SUPERFAMILY SSF52402 256 378 7.2E-13 T 11-10-2018 AMK58_24260 463d3f06d73695ce3601c03f41cb313b 909 Gene3D G3DSA:1.20.120.620 403 506 2.6E-23 T 11-10-2018 IPR038318 KdpD, transmembrane domain superfamily AMK58_24260 463d3f06d73695ce3601c03f41cb313b 909 SUPERFAMILY SSF55874 732 896 1.96E-40 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_24260 463d3f06d73695ce3601c03f41cb313b 909 Gene3D G3DSA:3.40.50.620 241 378 3.2E-12 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_24260 463d3f06d73695ce3601c03f41cb313b 909 Gene3D G3DSA:3.40.50.300 23 233 7.4E-101 T 11-10-2018 AMK58_24260 463d3f06d73695ce3601c03f41cb313b 909 Gene3D G3DSA:3.30.450.40 516 666 1.0E-35 T 11-10-2018 IPR029016 GAF-like domain superfamily AMK58_24260 463d3f06d73695ce3601c03f41cb313b 909 Pfam PF00582 Universal stress protein family 256 370 2.8E-8 T 11-10-2018 IPR006016 UspA AMK58_24260 463d3f06d73695ce3601c03f41cb313b 909 SMART SM00388 674 742 2.3E-16 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_24260 463d3f06d73695ce3601c03f41cb313b 909 PRINTS PR00344 Bacterial sensor protein C-terminal signature 841 851 8.1E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_24260 463d3f06d73695ce3601c03f41cb313b 909 PRINTS PR00344 Bacterial sensor protein C-terminal signature 823 837 8.1E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_24260 463d3f06d73695ce3601c03f41cb313b 909 PRINTS PR00344 Bacterial sensor protein C-terminal signature 882 895 8.1E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_24260 463d3f06d73695ce3601c03f41cb313b 909 PRINTS PR00344 Bacterial sensor protein C-terminal signature 857 875 8.1E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_24260 463d3f06d73695ce3601c03f41cb313b 909 Pfam PF00512 His Kinase A (phospho-acceptor) domain 675 742 1.7E-13 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_24260 463d3f06d73695ce3601c03f41cb313b 909 Pfam PF13493 Domain of unknown function (DUF4118) 406 511 5.1E-28 T 11-10-2018 IPR025201 Sensor protein KdpD, transmembrane domain AMK58_24260 463d3f06d73695ce3601c03f41cb313b 909 SUPERFAMILY SSF47384 668 742 5.3E-16 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_24260 463d3f06d73695ce3601c03f41cb313b 909 SUPERFAMILY SSF55781 533 665 7.61E-7 T 11-10-2018 AMK58_24260 463d3f06d73695ce3601c03f41cb313b 909 Pfam PF13492 GAF domain 532 655 1.4E-14 T 11-10-2018 IPR003018 GAF domain GO:0005515 AMK58_24260 463d3f06d73695ce3601c03f41cb313b 909 Gene3D G3DSA:3.30.565.10 748 900 1.1E-37 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_24260 463d3f06d73695ce3601c03f41cb313b 909 Pfam PF02702 Osmosensitive K+ channel His kinase sensor domain 26 234 2.0E-99 T 11-10-2018 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal GO:0000155|GO:0000160|GO:0004673|GO:0016020 AMK58_24260 463d3f06d73695ce3601c03f41cb313b 909 Gene3D G3DSA:1.10.287.130 667 741 1.8E-17 T 11-10-2018 AMK58_11605 61916432ccaac8ac821f12de157e0588 231 SUPERFAMILY SSF52402 5 228 6.62E-61 T 11-10-2018 AMK58_11605 61916432ccaac8ac821f12de157e0588 231 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 6 213 8.5E-62 T 11-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 AMK58_11605 61916432ccaac8ac821f12de157e0588 231 Pfam PF06508 Queuosine biosynthesis protein QueC 6 220 1.1E-76 T 11-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 AMK58_11605 61916432ccaac8ac821f12de157e0588 231 PIRSF PIRSF006293 2 230 6.0E-78 T 11-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 AMK58_11605 61916432ccaac8ac821f12de157e0588 231 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 4 226 55.095 T 11-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 AMK58_11605 61916432ccaac8ac821f12de157e0588 231 Gene3D G3DSA:3.40.50.620 3 227 1.8E-72 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_26595 7c24b48151b79af92cf27f3164f5f110 229 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 82 5.4E-13 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_26595 7c24b48151b79af92cf27f3164f5f110 229 Pfam PF07729 FCD domain 92 213 2.0E-24 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_26595 7c24b48151b79af92cf27f3164f5f110 229 SMART SM00345 21 82 7.6E-13 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_26595 7c24b48151b79af92cf27f3164f5f110 229 Gene3D G3DSA:1.20.120.530 86 226 7.9E-27 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_26595 7c24b48151b79af92cf27f3164f5f110 229 SUPERFAMILY SSF48008 89 223 1.39E-23 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_26595 7c24b48151b79af92cf27f3164f5f110 229 Gene3D G3DSA:1.10.10.10 13 83 1.6E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_26595 7c24b48151b79af92cf27f3164f5f110 229 SMART SM00895 92 216 4.5E-16 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_26595 7c24b48151b79af92cf27f3164f5f110 229 SUPERFAMILY SSF46785 12 108 3.08E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_26595 7c24b48151b79af92cf27f3164f5f110 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 56 6.1E-7 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_26595 7c24b48151b79af92cf27f3164f5f110 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 56 72 6.1E-7 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_06900 7c24b48151b79af92cf27f3164f5f110 229 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 82 5.4E-13 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_06900 7c24b48151b79af92cf27f3164f5f110 229 Pfam PF07729 FCD domain 92 213 2.0E-24 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_06900 7c24b48151b79af92cf27f3164f5f110 229 SMART SM00345 21 82 7.6E-13 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_06900 7c24b48151b79af92cf27f3164f5f110 229 Gene3D G3DSA:1.20.120.530 86 226 7.9E-27 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_06900 7c24b48151b79af92cf27f3164f5f110 229 SUPERFAMILY SSF48008 89 223 1.39E-23 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_06900 7c24b48151b79af92cf27f3164f5f110 229 Gene3D G3DSA:1.10.10.10 13 83 1.6E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_06900 7c24b48151b79af92cf27f3164f5f110 229 SMART SM00895 92 216 4.5E-16 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_06900 7c24b48151b79af92cf27f3164f5f110 229 SUPERFAMILY SSF46785 12 108 3.08E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_06900 7c24b48151b79af92cf27f3164f5f110 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 56 6.1E-7 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_06900 7c24b48151b79af92cf27f3164f5f110 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 56 72 6.1E-7 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_20215 51cd33214f76355c733e35afe3c05f15 158 Pfam PF12802 MarR family 54 103 2.1E-11 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_20215 51cd33214f76355c733e35afe3c05f15 158 SUPERFAMILY SSF46785 16 152 9.24E-31 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_20215 51cd33214f76355c733e35afe3c05f15 158 Gene3D G3DSA:1.10.10.10 19 157 3.2E-32 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_20215 51cd33214f76355c733e35afe3c05f15 158 SMART SM00347 38 139 1.1E-17 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_20215 51cd33214f76355c733e35afe3c05f15 158 PRINTS PR00598 Bacterial regulatory protein MarR family signature 63 79 4.2E-10 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_20215 51cd33214f76355c733e35afe3c05f15 158 PRINTS PR00598 Bacterial regulatory protein MarR family signature 80 95 4.2E-10 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_20215 51cd33214f76355c733e35afe3c05f15 158 PRINTS PR00598 Bacterial regulatory protein MarR family signature 99 115 4.2E-10 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_12055 cc9d4d5045910dd582dec309c7b851d5 291 Gene3D G3DSA:1.10.3720.10 64 284 2.7E-20 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_12055 cc9d4d5045910dd582dec309c7b851d5 291 SUPERFAMILY SSF161098 69 269 1.7E-22 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_12055 cc9d4d5045910dd582dec309c7b851d5 291 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 287 1.4E-29 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_12055 cc9d4d5045910dd582dec309c7b851d5 291 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 1 30 7.7E-6 T 11-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AMK58_15130 522e1ae899f32ea0a6b1a1e96ec4f340 337 PIRSF PIRSF026760 3 336 3.4E-96 T 11-10-2018 IPR011669 Uncharacterised conserved protein UCP026760 AMK58_15130 522e1ae899f32ea0a6b1a1e96ec4f340 337 Pfam PF17396 Domain of unknown function (DUF1611_N) Rossmann-like domain 39 124 2.8E-27 T 11-10-2018 IPR035402 Domain of unknown function DUF1611-N, Rossmann-like domain AMK58_15130 522e1ae899f32ea0a6b1a1e96ec4f340 337 Pfam PF07755 Domain of unknown function (DUF1611_C) P-loop domain 130 327 3.3E-70 T 11-10-2018 IPR035086 Domain of unknown function DUF1611, P-loop AMK58_15130 522e1ae899f32ea0a6b1a1e96ec4f340 337 SUPERFAMILY SSF52540 2 332 2.55E-108 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_15130 522e1ae899f32ea0a6b1a1e96ec4f340 337 Gene3D G3DSA:3.40.50.300 128 333 5.1E-70 T 11-10-2018 AMK58_15130 522e1ae899f32ea0a6b1a1e96ec4f340 337 Gene3D G3DSA:3.40.50.720 3 127 1.9E-21 T 11-10-2018 AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 SUPERFAMILY SSF51120 701 878 2.82E-9 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Gene3D G3DSA:2.150.10.10 5165 5278 4.6E-23 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Gene3D G3DSA:2.150.10.10 5121 5164 6.7E-11 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 SUPERFAMILY SSF141072 4013 4149 2.35E-22 T 11-10-2018 IPR038081 CalX-like domain superfamily AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Gene3D G3DSA:2.60.40.10 3130 3239 2.1E-23 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 SMART SM00736 3139 3239 1.1E-41 T 11-10-2018 IPR006644 Dystroglycan-type cadherin-like GO:0016020 AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 5076 5094 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 SUPERFAMILY SSF141072 3459 3588 2.22E-24 T 11-10-2018 IPR038081 CalX-like domain superfamily AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 SUPERFAMILY SSF69318 5 329 1.29E-31 T 11-10-2018 AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Pfam PF03160 Calx-beta domain 3479 3556 2.0E-4 T 11-10-2018 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Pfam PF03160 Calx-beta domain 4027 4108 1.1E-4 T 11-10-2018 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 5085 5103 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 SMART SM00237 3457 3557 1.5E-5 T 11-10-2018 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 SMART SM00237 4002 4108 0.0051 T 11-10-2018 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 5175 5193 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Gene3D G3DSA:2.150.10.10 5030 5073 3.6E-7 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 SUPERFAMILY SSF51120 807 1011 4.71E-9 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Pfam PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella 133 199 5.4E-9 T 11-10-2018 AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Pfam PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella 22 89 1.5E-9 T 11-10-2018 AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 SUPERFAMILY SSF51120 4984 5084 5.75E-18 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Gene3D G3DSA:2.150.10.10 4951 5029 9.5E-6 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Gene3D G3DSA:2.60.40.10 1510 1607 2.6E-19 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Gene3D G3DSA:2.60.40.10 2697 2795 3.8E-19 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Gene3D G3DSA:2.60.40.10 2499 2598 2.0E-18 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Gene3D G3DSA:2.60.40.10 2006 2103 2.7E-18 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Gene3D G3DSA:2.60.40.10 1311 1410 2.3E-18 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Gene3D G3DSA:2.60.40.10 1905 2004 1.3E-19 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Gene3D G3DSA:2.60.40.10 1115 1213 1.6E-17 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Gene3D G3DSA:2.60.40.10 2301 2399 5.1E-18 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Gene3D G3DSA:2.60.40.10 1412 1509 2.2E-17 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Gene3D G3DSA:2.60.40.10 1608 1706 3.9E-19 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Gene3D G3DSA:2.60.40.10 2400 2498 3.7E-18 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Gene3D G3DSA:2.60.40.10 2796 2895 3.8E-19 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Gene3D G3DSA:2.60.40.10 1015 1114 3.7E-13 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Gene3D G3DSA:2.60.40.10 2599 2696 1.9E-17 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Gene3D G3DSA:2.60.40.10 2104 2201 1.5E-18 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Gene3D G3DSA:2.60.40.10 1214 1310 2.2E-18 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Gene3D G3DSA:2.60.40.10 1707 1806 4.6E-19 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Gene3D G3DSA:2.60.40.10 2202 2300 6.0E-18 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Gene3D G3DSA:2.60.40.10 1807 1904 6.4E-19 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 SUPERFAMILY SSF49313 3137 3237 2.35E-25 T 11-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 5193 5211 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Gene3D G3DSA:2.60.40.2030 4009 4147 2.8E-21 T 11-10-2018 IPR038081 CalX-like domain superfamily AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Gene3D G3DSA:2.60.40.2030 3452 3592 9.8E-19 T 11-10-2018 IPR038081 CalX-like domain superfamily AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Pfam PF12245 Bacterial Ig-like domain (group 3) 2560 2587 0.016 T 11-10-2018 IPR022038 Bacterial Ig-like domain AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Pfam PF12245 Bacterial Ig-like domain (group 3) 1966 1994 0.043 T 11-10-2018 IPR022038 Bacterial Ig-like domain AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Pfam PF12245 Bacterial Ig-like domain (group 3) 2065 2093 0.043 T 11-10-2018 IPR022038 Bacterial Ig-like domain AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Pfam PF12245 Bacterial Ig-like domain (group 3) 1471 1499 0.018 T 11-10-2018 IPR022038 Bacterial Ig-like domain AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Pfam PF12245 Bacterial Ig-like domain (group 3) 1570 1598 0.043 T 11-10-2018 IPR022038 Bacterial Ig-like domain AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Pfam PF12245 Bacterial Ig-like domain (group 3) 1372 1400 0.0048 T 11-10-2018 IPR022038 Bacterial Ig-like domain AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Pfam PF12245 Bacterial Ig-like domain (group 3) 1174 1203 0.0046 T 11-10-2018 IPR022038 Bacterial Ig-like domain AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Pfam PF12245 Bacterial Ig-like domain (group 3) 1768 1796 0.13 T 11-10-2018 IPR022038 Bacterial Ig-like domain AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Pfam PF12245 Bacterial Ig-like domain (group 3) 1669 1697 0.043 T 11-10-2018 IPR022038 Bacterial Ig-like domain AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Pfam PF12245 Bacterial Ig-like domain (group 3) 2362 2390 0.018 T 11-10-2018 IPR022038 Bacterial Ig-like domain AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Pfam PF12245 Bacterial Ig-like domain (group 3) 2263 2291 0.018 T 11-10-2018 IPR022038 Bacterial Ig-like domain AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Pfam PF12245 Bacterial Ig-like domain (group 3) 2164 2192 0.018 T 11-10-2018 IPR022038 Bacterial Ig-like domain AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Pfam PF12245 Bacterial Ig-like domain (group 3) 1273 1300 0.0011 T 11-10-2018 IPR022038 Bacterial Ig-like domain AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Pfam PF12245 Bacterial Ig-like domain (group 3) 2659 2687 0.018 T 11-10-2018 IPR022038 Bacterial Ig-like domain AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Pfam PF12245 Bacterial Ig-like domain (group 3) 2758 2786 0.043 T 11-10-2018 IPR022038 Bacterial Ig-like domain AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Pfam PF12245 Bacterial Ig-like domain (group 3) 2461 2489 0.018 T 11-10-2018 IPR022038 Bacterial Ig-like domain AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Pfam PF12245 Bacterial Ig-like domain (group 3) 2857 2884 0.0047 T 11-10-2018 IPR022038 Bacterial Ig-like domain AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Pfam PF12245 Bacterial Ig-like domain (group 3) 1867 1895 0.14 T 11-10-2018 IPR022038 Bacterial Ig-like domain AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Gene3D G3DSA:2.150.10.10 5074 5120 4.2E-12 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 SUPERFAMILY SSF51120 5074 5260 3.84E-31 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_22270 a4259f044e6e6be104e6cb82a31e6048 5281 Gene3D G3DSA:2.60.40.10 4611 4687 7.5E-12 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_19995 8479f6073f80a7a3d5394910a264fc23 452 Pfam PF05711 Macrocin-O-methyltransferase (TylF) 347 408 1.7E-5 T 11-10-2018 IPR008884 Macrocin-O-methyltransferase AMK58_19995 8479f6073f80a7a3d5394910a264fc23 452 Pfam PF13432 Tetratricopeptide repeat 121 175 0.0019 T 11-10-2018 AMK58_19995 8479f6073f80a7a3d5394910a264fc23 452 SUPERFAMILY SSF53335 287 425 9.41E-10 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_19995 8479f6073f80a7a3d5394910a264fc23 452 Pfam PF14559 Tetratricopeptide repeat 59 113 1.0E-6 T 11-10-2018 AMK58_19995 8479f6073f80a7a3d5394910a264fc23 452 Gene3D G3DSA:1.25.40.10 9 273 6.2E-21 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_19995 8479f6073f80a7a3d5394910a264fc23 452 SUPERFAMILY SSF48452 51 250 6.35E-19 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_19995 8479f6073f80a7a3d5394910a264fc23 452 Gene3D G3DSA:3.40.50.150 274 440 1.6E-30 T 11-10-2018 AMK58_02540 46f68fac2ee55a4203464f577dda7ec8 384 SUPERFAMILY SSF52540 69 213 5.99E-13 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_02540 46f68fac2ee55a4203464f577dda7ec8 384 Gene3D G3DSA:3.40.50.300 23 199 3.0E-18 T 11-10-2018 AMK58_02540 46f68fac2ee55a4203464f577dda7ec8 384 Pfam PF03969 AFG1-like ATPase 8 380 5.3E-124 T 11-10-2018 IPR005654 ATPase, AFG1-like GO:0005524 AMK58_06165 8980f63cad3d47cc24ef93ac65a95b42 695 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 476 498 9.1E-12 T 11-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 AMK58_06165 8980f63cad3d47cc24ef93ac65a95b42 695 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 322 344 9.1E-12 T 11-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 AMK58_06165 8980f63cad3d47cc24ef93ac65a95b42 695 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 134 154 9.1E-12 T 11-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 AMK58_06165 8980f63cad3d47cc24ef93ac65a95b42 695 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 76 691 4.9E-259 T 11-10-2018 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06165 8980f63cad3d47cc24ef93ac65a95b42 695 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 114 171 5.3E-24 T 11-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06165 8980f63cad3d47cc24ef93ac65a95b42 695 Pfam PF00361 Proton-conducting membrane transporter 183 473 8.6E-92 T 11-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06165 8980f63cad3d47cc24ef93ac65a95b42 695 Pfam PF06455 NADH dehydrogenase subunit 5 C-terminus 568 688 6.0E-8 T 11-10-2018 IPR010934 NADH dehydrogenase subunit 5, C-terminal GO:0008137|GO:0042773|GO:0055114 KEGG: 00190+1.6.5.3|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-5083|MetaCyc: PWY-6692|Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06165 8980f63cad3d47cc24ef93ac65a95b42 695 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 132 157 6.6E-64 T 11-10-2018 AMK58_06165 8980f63cad3d47cc24ef93ac65a95b42 695 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 372 384 6.6E-64 T 11-10-2018 AMK58_06165 8980f63cad3d47cc24ef93ac65a95b42 695 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 207 228 6.6E-64 T 11-10-2018 AMK58_06165 8980f63cad3d47cc24ef93ac65a95b42 695 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 160 180 6.6E-64 T 11-10-2018 AMK58_06165 8980f63cad3d47cc24ef93ac65a95b42 695 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 304 330 6.6E-64 T 11-10-2018 AMK58_06165 8980f63cad3d47cc24ef93ac65a95b42 695 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 477 496 6.6E-64 T 11-10-2018 AMK58_06165 8980f63cad3d47cc24ef93ac65a95b42 695 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 282 303 6.6E-64 T 11-10-2018 AMK58_26515 a0dcf4bbf0e7dd47038b449d34a427e1 263 Pfam PF00561 alpha/beta hydrolase fold 37 157 1.0E-17 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_26515 a0dcf4bbf0e7dd47038b449d34a427e1 263 Gene3D G3DSA:3.40.50.1820 4 262 9.1E-41 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_26515 a0dcf4bbf0e7dd47038b449d34a427e1 263 SUPERFAMILY SSF53474 20 261 1.92E-42 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_26515 a0dcf4bbf0e7dd47038b449d34a427e1 263 PRINTS PR00111 Alpha/beta hydrolase fold signature 63 78 1.1E-9 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_26515 a0dcf4bbf0e7dd47038b449d34a427e1 263 PRINTS PR00111 Alpha/beta hydrolase fold signature 125 138 1.1E-9 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_26515 a0dcf4bbf0e7dd47038b449d34a427e1 263 PRINTS PR00111 Alpha/beta hydrolase fold signature 111 124 1.1E-9 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_05790 0891f4f943e174ee2c5a0dbac42bef5d 480 Pfam PF00224 Pyruvate kinase, barrel domain 12 341 3.5E-112 T 11-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_05790 0891f4f943e174ee2c5a0dbac42bef5d 480 SUPERFAMILY SSF50800 80 175 1.62E-23 T 11-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily AMK58_05790 0891f4f943e174ee2c5a0dbac42bef5d 480 Gene3D G3DSA:3.40.1380.20 340 473 8.7E-169 T 11-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_05790 0891f4f943e174ee2c5a0dbac42bef5d 480 SUPERFAMILY SSF51621 9 346 5.23E-97 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMK58_05790 0891f4f943e174ee2c5a0dbac42bef5d 480 SUPERFAMILY SSF52935 327 477 1.22E-37 T 11-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_05790 0891f4f943e174ee2c5a0dbac42bef5d 480 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 13 475 1.7E-153 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_05790 0891f4f943e174ee2c5a0dbac42bef5d 480 Pfam PF02887 Pyruvate kinase, alpha/beta domain 362 474 2.0E-30 T 11-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_05790 0891f4f943e174ee2c5a0dbac42bef5d 480 Gene3D G3DSA:2.40.33.10 80 176 8.7E-169 T 11-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_05790 0891f4f943e174ee2c5a0dbac42bef5d 480 PRINTS PR01050 Pyruvate kinase family signature 248 272 1.2E-65 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_05790 0891f4f943e174ee2c5a0dbac42bef5d 480 PRINTS PR01050 Pyruvate kinase family signature 221 247 1.2E-65 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_05790 0891f4f943e174ee2c5a0dbac42bef5d 480 PRINTS PR01050 Pyruvate kinase family signature 298 316 1.2E-65 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_05790 0891f4f943e174ee2c5a0dbac42bef5d 480 PRINTS PR01050 Pyruvate kinase family signature 317 333 1.2E-65 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_05790 0891f4f943e174ee2c5a0dbac42bef5d 480 PRINTS PR01050 Pyruvate kinase family signature 69 85 1.2E-65 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_05790 0891f4f943e174ee2c5a0dbac42bef5d 480 PRINTS PR01050 Pyruvate kinase family signature 194 208 1.2E-65 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_05790 0891f4f943e174ee2c5a0dbac42bef5d 480 PRINTS PR01050 Pyruvate kinase family signature 273 297 1.2E-65 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_05790 0891f4f943e174ee2c5a0dbac42bef5d 480 Gene3D G3DSA:3.20.20.60 12 339 8.7E-169 T 11-10-2018 AMK58_22720 3fdb7cfd12b8be8f2d5257b88ed0c80d 889 Gene3D G3DSA:3.40.50.300 547 761 6.6E-82 T 11-10-2018 AMK58_22720 3fdb7cfd12b8be8f2d5257b88ed0c80d 889 SUPERFAMILY SSF52540 161 524 2.43E-94 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_22720 3fdb7cfd12b8be8f2d5257b88ed0c80d 889 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 68 1.5E-9 T 11-10-2018 IPR004176 Clp, N-terminal AMK58_22720 3fdb7cfd12b8be8f2d5257b88ed0c80d 889 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 95 144 2.7E-6 T 11-10-2018 IPR004176 Clp, N-terminal AMK58_22720 3fdb7cfd12b8be8f2d5257b88ed0c80d 889 SUPERFAMILY SSF52540 543 837 2.38E-75 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_22720 3fdb7cfd12b8be8f2d5257b88ed0c80d 889 SUPERFAMILY SSF81923 6 154 9.68E-28 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 AMK58_22720 3fdb7cfd12b8be8f2d5257b88ed0c80d 889 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 852 0.0 T 11-10-2018 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0042026 AMK58_22720 3fdb7cfd12b8be8f2d5257b88ed0c80d 889 Gene3D G3DSA:1.10.8.60 763 854 5.5E-24 T 11-10-2018 AMK58_22720 3fdb7cfd12b8be8f2d5257b88ed0c80d 889 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 672 690 2.8E-38 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 AMK58_22720 3fdb7cfd12b8be8f2d5257b88ed0c80d 889 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 705 719 2.8E-38 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 AMK58_22720 3fdb7cfd12b8be8f2d5257b88ed0c80d 889 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 643 661 2.8E-38 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 AMK58_22720 3fdb7cfd12b8be8f2d5257b88ed0c80d 889 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 598 616 2.8E-38 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 AMK58_22720 3fdb7cfd12b8be8f2d5257b88ed0c80d 889 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 295 307 - T 11-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 AMK58_22720 3fdb7cfd12b8be8f2d5257b88ed0c80d 889 Gene3D G3DSA:3.40.50.300 345 541 1.8E-63 T 11-10-2018 AMK58_22720 3fdb7cfd12b8be8f2d5257b88ed0c80d 889 SMART SM00382 199 344 8.1E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_22720 3fdb7cfd12b8be8f2d5257b88ed0c80d 889 SMART SM00382 594 764 2.1E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_22720 3fdb7cfd12b8be8f2d5257b88ed0c80d 889 Gene3D G3DSA:3.40.50.300 149 343 1.3E-74 T 11-10-2018 AMK58_22720 3fdb7cfd12b8be8f2d5257b88ed0c80d 889 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 628 646 - T 11-10-2018 IPR028299 ClpA/B, conserved site 2 AMK58_22720 3fdb7cfd12b8be8f2d5257b88ed0c80d 889 Pfam PF07724 AAA domain (Cdc48 subfamily) 593 756 1.2E-50 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMK58_22720 3fdb7cfd12b8be8f2d5257b88ed0c80d 889 Gene3D G3DSA:1.10.1780.10 3 148 5.1E-25 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 AMK58_22720 3fdb7cfd12b8be8f2d5257b88ed0c80d 889 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 204 316 7.0E-13 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMK58_22720 3fdb7cfd12b8be8f2d5257b88ed0c80d 889 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 763 839 1.7E-22 T 11-10-2018 IPR019489 Clp ATPase, C-terminal AMK58_22720 3fdb7cfd12b8be8f2d5257b88ed0c80d 889 SMART SM01086 763 852 3.0E-31 T 11-10-2018 IPR019489 Clp ATPase, C-terminal AMK58_29230 7295be3ea06c17cef929b1edfb3b1525 359 Pfam PF01370 NAD dependent epimerase/dehydratase family 9 277 3.2E-32 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMK58_29230 7295be3ea06c17cef929b1edfb3b1525 359 Gene3D G3DSA:3.90.25.10 217 350 3.8E-59 T 11-10-2018 AMK58_29230 7295be3ea06c17cef929b1edfb3b1525 359 Gene3D G3DSA:3.40.50.720 9 337 3.8E-59 T 11-10-2018 AMK58_29230 7295be3ea06c17cef929b1edfb3b1525 359 SUPERFAMILY SSF51735 8 351 5.35E-55 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_21695 3c68e46d00811b3d878332de8fcb891a 123 SUPERFAMILY SSF46785 16 100 1.03E-5 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_25510 228da528519fbb2c63de47cb5ab2b9cd 435 SUPERFAMILY SSF53901 10 265 6.21E-66 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_25510 228da528519fbb2c63de47cb5ab2b9cd 435 Gene3D G3DSA:3.40.47.10 270 414 2.5E-43 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_25510 228da528519fbb2c63de47cb5ab2b9cd 435 Gene3D G3DSA:3.40.47.10 6 268 3.2E-75 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_25510 228da528519fbb2c63de47cb5ab2b9cd 435 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 268 381 2.0E-33 T 11-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal AMK58_25510 228da528519fbb2c63de47cb5ab2b9cd 435 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 10 260 3.6E-49 T 11-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal AMK58_25510 228da528519fbb2c63de47cb5ab2b9cd 435 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 167 183 - T 11-10-2018 IPR018201 Beta-ketoacyl synthase, active site AMK58_25510 228da528519fbb2c63de47cb5ab2b9cd 435 SUPERFAMILY SSF53901 229 425 9.09E-64 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_25510 228da528519fbb2c63de47cb5ab2b9cd 435 SMART SM00825 Beta-ketoacyl synthase 12 427 4.3E-14 T 11-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMK58_18600 c9e83172684e1a6bb93831193bb3f774 302 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 24 229 2.3E-27 T 11-10-2018 IPR008775 Phytanoyl-CoA dioxygenase AMK58_18600 c9e83172684e1a6bb93831193bb3f774 302 Gene3D G3DSA:2.60.120.620 4 266 8.2E-60 T 11-10-2018 AMK58_18600 c9e83172684e1a6bb93831193bb3f774 302 SUPERFAMILY SSF51197 13 262 3.3E-56 T 11-10-2018 AMK58_21955 02c729afe8203a31da62fb5e5d535175 437 Gene3D G3DSA:3.30.70.360 216 343 3.6E-150 T 11-10-2018 AMK58_21955 02c729afe8203a31da62fb5e5d535175 437 SUPERFAMILY SSF53187 18 431 3.14E-59 T 11-10-2018 AMK58_21955 02c729afe8203a31da62fb5e5d535175 437 TIGRFAM TIGR01910 DapE-ArgE: peptidase, ArgE/DapE family 31 421 2.0E-86 T 11-10-2018 IPR010182 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase/Succinyl-diaminopimelate desuccinylase AMK58_21955 02c729afe8203a31da62fb5e5d535175 437 SUPERFAMILY SSF55031 216 325 2.54E-11 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain AMK58_21955 02c729afe8203a31da62fb5e5d535175 437 Gene3D G3DSA:3.40.630.10 38 431 3.6E-150 T 11-10-2018 AMK58_21955 02c729afe8203a31da62fb5e5d535175 437 Pfam PF01546 Peptidase family M20/M25/M40 109 426 2.6E-36 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 AMK58_21955 02c729afe8203a31da62fb5e5d535175 437 Pfam PF07687 Peptidase dimerisation domain 213 325 1.4E-17 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain AMK58_24630 f365bfd89ba598093dad281ac0a3c8ae 262 SUPERFAMILY SSF51658 1 254 1.7E-84 T 11-10-2018 IPR036237 Xylose isomerase-like superfamily AMK58_24630 f365bfd89ba598093dad281ac0a3c8ae 262 PIRSF PIRSF006241 1 260 4.9E-94 T 11-10-2018 IPR026040 Hydroxypyruvate isomerase-like AMK58_24630 f365bfd89ba598093dad281ac0a3c8ae 262 Pfam PF01261 Xylose isomerase-like TIM barrel 21 217 1.6E-35 T 11-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AMK58_24630 f365bfd89ba598093dad281ac0a3c8ae 262 Gene3D G3DSA:3.20.20.150 1 261 3.5E-81 T 11-10-2018 AMK58_15905 4f7856e5ca07d3a1c570456474703fbb 282 SUPERFAMILY SSF53335 23 280 3.13E-73 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_15905 4f7856e5ca07d3a1c570456474703fbb 282 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 58 86 - T 11-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 AMK58_15905 4f7856e5ca07d3a1c570456474703fbb 282 Gene3D G3DSA:3.40.50.150 7 217 2.2E-69 T 11-10-2018 AMK58_15905 4f7856e5ca07d3a1c570456474703fbb 282 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 26 280 51.663 T 11-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 AMK58_15905 4f7856e5ca07d3a1c570456474703fbb 282 Pfam PF00398 Ribosomal RNA adenine dimethylase 27 274 4.3E-52 T 11-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm AMK58_15905 4f7856e5ca07d3a1c570456474703fbb 282 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 27 277 5.1E-71 T 11-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 AMK58_15905 4f7856e5ca07d3a1c570456474703fbb 282 Gene3D G3DSA:1.10.8.100 218 282 7.7E-20 T 11-10-2018 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201|Reactome: R-HSA-6793080 AMK58_15905 4f7856e5ca07d3a1c570456474703fbb 282 SMART SM00650 42 214 1.0E-67 T 11-10-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 AMK58_15165 24bc4d034440292042529b878a785a06 334 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 20 125 6.4E-27 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMK58_15165 24bc4d034440292042529b878a785a06 334 SUPERFAMILY SSF51735 135 294 5.11E-40 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_15165 24bc4d034440292042529b878a785a06 334 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 54 68 - T 11-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AMK58_15165 24bc4d034440292042529b878a785a06 334 SUPERFAMILY SSF50129 9 164 1.0E-37 T 11-10-2018 IPR011032 GroES-like superfamily AMK58_15165 24bc4d034440292042529b878a785a06 334 Pfam PF00107 Zinc-binding dehydrogenase 168 293 1.0E-30 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMK58_15165 24bc4d034440292042529b878a785a06 334 Gene3D G3DSA:3.40.50.720 145 278 1.8E-87 T 11-10-2018 AMK58_15165 24bc4d034440292042529b878a785a06 334 Gene3D G3DSA:3.90.180.10 12 317 1.8E-87 T 11-10-2018 AMK58_15165 24bc4d034440292042529b878a785a06 334 SMART SM00829 4 332 9.9E-4 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMK58_10755 b4ee3d7f0a64147403b4cfd8c034b8d5 264 PIRSF PIRSF015601 6 243 1.4E-50 T 11-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 AMK58_10755 b4ee3d7f0a64147403b4cfd8c034b8d5 264 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 17 241 2.3E-29 T 11-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 AMK58_10755 b4ee3d7f0a64147403b4cfd8c034b8d5 264 SUPERFAMILY SSF88697 8 74 5.22E-14 T 11-10-2018 IPR015947 PUA-like superfamily AMK58_10755 b4ee3d7f0a64147403b4cfd8c034b8d5 264 Pfam PF04452 RNA methyltransferase 23 238 1.2E-49 T 11-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 AMK58_10755 b4ee3d7f0a64147403b4cfd8c034b8d5 264 Gene3D G3DSA:2.40.240.20 7 74 1.7E-22 T 11-10-2018 AMK58_10755 b4ee3d7f0a64147403b4cfd8c034b8d5 264 SUPERFAMILY SSF75217 80 243 3.31E-42 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases AMK58_10755 b4ee3d7f0a64147403b4cfd8c034b8d5 264 Gene3D G3DSA:3.40.1280.10 77 244 3.6E-47 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMK58_09320 c57e639fbd6287efeccfb49884730980 335 SUPERFAMILY SSF51735 1 172 1.25E-64 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_09320 c57e639fbd6287efeccfb49884730980 335 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 158 314 2.0E-65 T 11-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_09320 c57e639fbd6287efeccfb49884730980 335 SUPERFAMILY SSF55347 153 315 2.11E-69 T 11-10-2018 AMK58_09320 c57e639fbd6287efeccfb49884730980 335 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 104 8.8E-40 T 11-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_09320 c57e639fbd6287efeccfb49884730980 335 Gene3D G3DSA:3.40.50.720 4 326 1.0E-152 T 11-10-2018 AMK58_09320 c57e639fbd6287efeccfb49884730980 335 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 325 3.3E-133 T 11-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_09320 c57e639fbd6287efeccfb49884730980 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 111 124 4.2E-38 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_09320 c57e639fbd6287efeccfb49884730980 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 270 285 4.2E-38 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_09320 c57e639fbd6287efeccfb49884730980 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 230 247 4.2E-38 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_09320 c57e639fbd6287efeccfb49884730980 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 147 165 4.2E-38 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_09320 c57e639fbd6287efeccfb49884730980 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 174 190 4.2E-38 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_09320 c57e639fbd6287efeccfb49884730980 335 SMART SM00846 3 153 1.8E-99 T 11-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_09320 c57e639fbd6287efeccfb49884730980 335 PIRSF PIRSF000149 1 335 5.1E-140 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_09320 c57e639fbd6287efeccfb49884730980 335 Gene3D G3DSA:3.30.360.10 152 316 1.0E-152 T 11-10-2018 AMK58_09320 c57e639fbd6287efeccfb49884730980 335 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 151 158 - T 11-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_24795 e2f5df79e3d4188a1aae8c60aba4117f 139 Pfam PF02566 OsmC-like protein 38 136 2.7E-18 T 11-10-2018 IPR003718 OsmC/Ohr family AMK58_24795 e2f5df79e3d4188a1aae8c60aba4117f 139 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 4 136 1.7E-56 T 11-10-2018 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 AMK58_24795 e2f5df79e3d4188a1aae8c60aba4117f 139 Gene3D G3DSA:2.20.25.10 1 44 5.3E-20 T 11-10-2018 AMK58_24795 e2f5df79e3d4188a1aae8c60aba4117f 139 SUPERFAMILY SSF82784 1 136 7.46E-43 T 11-10-2018 IPR036102 OsmC/Ohr superfamily AMK58_24795 e2f5df79e3d4188a1aae8c60aba4117f 139 Gene3D G3DSA:3.30.300.20 45 138 1.2E-33 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta AMK58_08045 8d42adc0727dfb90e0a34efbd6ecc98d 230 SUPERFAMILY SSF46894 150 213 2.04E-19 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMK58_08045 8d42adc0727dfb90e0a34efbd6ecc98d 230 Pfam PF00196 Bacterial regulatory proteins, luxR family 153 208 1.0E-20 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_08045 8d42adc0727dfb90e0a34efbd6ecc98d 230 SMART SM00421 151 208 1.2E-23 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_08045 8d42adc0727dfb90e0a34efbd6ecc98d 230 Gene3D G3DSA:3.40.50.12740 4 213 6.7E-49 T 11-10-2018 AMK58_08045 8d42adc0727dfb90e0a34efbd6ecc98d 230 SUPERFAMILY SSF52172 1 121 8.4E-20 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_08045 8d42adc0727dfb90e0a34efbd6ecc98d 230 SMART SM00448 4 117 4.9E-11 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_08045 8d42adc0727dfb90e0a34efbd6ecc98d 230 Pfam PF00072 Response regulator receiver domain 7 117 7.9E-13 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_08045 8d42adc0727dfb90e0a34efbd6ecc98d 230 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 168 1.4E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_08045 8d42adc0727dfb90e0a34efbd6ecc98d 230 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 184 1.4E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_08045 8d42adc0727dfb90e0a34efbd6ecc98d 230 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 184 196 1.4E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_08045 8d42adc0727dfb90e0a34efbd6ecc98d 230 ProSitePatterns PS00622 LuxR-type HTH domain signature. 168 195 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_09205 885f06241e4cb1442e4ff874f821191d 655 SUPERFAMILY SSF56235 2 227 4.12E-66 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMK58_09205 885f06241e4cb1442e4ff874f821191d 655 Pfam PF00733 Asparagine synthase 251 638 2.5E-117 T 11-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 AMK58_09205 885f06241e4cb1442e4ff874f821191d 655 Pfam PF13537 Glutamine amidotransferase domain 50 171 4.1E-46 T 11-10-2018 IPR017932 Glutamine amidotransferase type 2 domain AMK58_09205 885f06241e4cb1442e4ff874f821191d 655 PIRSF PIRSF001589 1 655 3.9E-174 T 11-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 AMK58_09205 885f06241e4cb1442e4ff874f821191d 655 Gene3D G3DSA:3.60.20.10 2 189 6.1E-62 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMK58_09205 885f06241e4cb1442e4ff874f821191d 655 SUPERFAMILY SSF52402 241 634 2.79E-92 T 11-10-2018 AMK58_09205 885f06241e4cb1442e4ff874f821191d 655 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 574 2.6E-151 T 11-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 AMK58_01630 1db05f2bcb6fbe5959d766c39dd55408 405 Gene3D G3DSA:3.40.50.1100 18 214 5.2E-186 T 11-10-2018 AMK58_01630 1db05f2bcb6fbe5959d766c39dd55408 405 Gene3D G3DSA:3.40.50.1100 62 394 5.2E-186 T 11-10-2018 AMK58_01630 1db05f2bcb6fbe5959d766c39dd55408 405 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 89 103 - T 11-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AMK58_01630 1db05f2bcb6fbe5959d766c39dd55408 405 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 10 401 53.222 T 11-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AMK58_01630 1db05f2bcb6fbe5959d766c39dd55408 405 SUPERFAMILY SSF53686 11 399 5.37E-149 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMK58_01630 1db05f2bcb6fbe5959d766c39dd55408 405 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 15 400 5.0E-192 T 11-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AMK58_01630 1db05f2bcb6fbe5959d766c39dd55408 405 PIRSF PIRSF001413 6 405 1.1E-162 T 11-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AMK58_01630 1db05f2bcb6fbe5959d766c39dd55408 405 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 60 388 2.9E-48 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AMK58_11545 574c0f93aac82a7a9b43cbc3523a9849 189 SUPERFAMILY SSF56235 1 168 3.61E-15 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMK58_11545 574c0f93aac82a7a9b43cbc3523a9849 189 Gene3D G3DSA:3.60.20.10 2 170 1.6E-13 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMK58_29180 27dfb406aea8a937ba852941d9d80f27 192 Gene3D G3DSA:3.90.79.10 5 191 1.1E-35 T 11-10-2018 AMK58_29180 27dfb406aea8a937ba852941d9d80f27 192 ProSitePatterns PS00893 Nudix box signature. 81 102 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMK58_29180 27dfb406aea8a937ba852941d9d80f27 192 SUPERFAMILY SSF55811 13 181 6.09E-31 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMK58_29180 27dfb406aea8a937ba852941d9d80f27 192 Pfam PF00293 NUDIX domain 49 158 4.0E-13 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMK58_25720 f761f04767ee94dd0ae5703ad49593eb 374 Gene3D G3DSA:3.40.50.261 230 374 1.1E-38 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMK58_25720 f761f04767ee94dd0ae5703ad49593eb 374 SUPERFAMILY SSF52210 231 373 2.35E-34 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMK58_25720 f761f04767ee94dd0ae5703ad49593eb 374 SUPERFAMILY SSF56059 1 222 9.77E-59 T 11-10-2018 AMK58_25720 f761f04767ee94dd0ae5703ad49593eb 374 Gene3D G3DSA:3.30.470.20 1 222 9.4E-71 T 11-10-2018 AMK58_25720 f761f04767ee94dd0ae5703ad49593eb 374 Pfam PF08442 ATP-grasp domain 2 192 3.3E-52 T 11-10-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMK58_25720 f761f04767ee94dd0ae5703ad49593eb 374 PIRSF PIRSF001554 1 374 3.2E-114 T 11-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMK58_25720 f761f04767ee94dd0ae5703ad49593eb 374 Gene3D G3DSA:3.30.1490.20 21 95 9.4E-71 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMK58_25720 f761f04767ee94dd0ae5703ad49593eb 374 Pfam PF00549 CoA-ligase 253 349 1.5E-10 T 11-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMK58_25720 f761f04767ee94dd0ae5703ad49593eb 374 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 247 272 - T 11-10-2018 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMK58_03535 d7d5357bdb2380cde78dd782b36f08cf 252 Gene3D G3DSA:1.10.3720.10 45 237 4.2E-24 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_03535 d7d5357bdb2380cde78dd782b36f08cf 252 SUPERFAMILY SSF161098 48 231 1.57E-30 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_03535 d7d5357bdb2380cde78dd782b36f08cf 252 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 72 232 4.6E-19 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_02395 0707d29f273b81d8c6ea2550c835c3d4 856 SMART SM00304 326 379 3.3E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_02395 0707d29f273b81d8c6ea2550c835c3d4 856 SMART SM00304 538 590 0.58 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_02395 0707d29f273b81d8c6ea2550c835c3d4 856 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 766 795 1.7E-53 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_02395 0707d29f273b81d8c6ea2550c835c3d4 856 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 689 716 1.7E-53 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_02395 0707d29f273b81d8c6ea2550c835c3d4 856 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 612 641 1.7E-53 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_02395 0707d29f273b81d8c6ea2550c835c3d4 856 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 718 747 1.7E-53 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_02395 0707d29f273b81d8c6ea2550c835c3d4 856 Gene3D G3DSA:1.20.1480.50 285 379 3.2E-14 T 11-10-2018 AMK58_02395 0707d29f273b81d8c6ea2550c835c3d4 856 Pfam PF08448 PAS fold 384 493 2.2E-7 T 11-10-2018 IPR013656 PAS fold-4 AMK58_02395 0707d29f273b81d8c6ea2550c835c3d4 856 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 651 806 3.7E-52 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_02395 0707d29f273b81d8c6ea2550c835c3d4 856 Gene3D G3DSA:3.30.450.20 380 494 5.5E-25 T 11-10-2018 AMK58_02395 0707d29f273b81d8c6ea2550c835c3d4 856 Pfam PF00672 HAMP domain 326 372 2.4E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_02395 0707d29f273b81d8c6ea2550c835c3d4 856 SUPERFAMILY SSF58104 558 840 1.92E-72 T 11-10-2018 AMK58_02395 0707d29f273b81d8c6ea2550c835c3d4 856 SMART SM01358 44 297 4.3E-19 T 11-10-2018 IPR032255 Helical bimodular sensor domain AMK58_02395 0707d29f273b81d8c6ea2550c835c3d4 856 SMART SM00283 591 838 9.4E-96 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_02395 0707d29f273b81d8c6ea2550c835c3d4 856 SUPERFAMILY SSF158472 326 373 1.57E-8 T 11-10-2018 AMK58_02395 0707d29f273b81d8c6ea2550c835c3d4 856 Gene3D G3DSA:1.10.287.950 539 840 4.3E-84 T 11-10-2018 AMK58_02395 0707d29f273b81d8c6ea2550c835c3d4 856 SUPERFAMILY SSF55785 391 501 1.92E-5 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 SUPERFAMILY SSF51120 592 712 1.09E-17 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 871 889 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 SUPERFAMILY SSF51120 229 349 1.09E-17 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 Pfam PF06594 Haemolysin-type calcium binding protein related domain 56 95 8.8E-10 T 11-10-2018 IPR010566 Haemolysin-type calcium binding-related AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 Pfam PF06594 Haemolysin-type calcium binding protein related domain 546 585 8.8E-10 T 11-10-2018 IPR010566 Haemolysin-type calcium binding-related AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 Pfam PF06594 Haemolysin-type calcium binding protein related domain 419 458 8.8E-10 T 11-10-2018 IPR010566 Haemolysin-type calcium binding-related AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 Pfam PF06594 Haemolysin-type calcium binding protein related domain 673 712 8.8E-10 T 11-10-2018 IPR010566 Haemolysin-type calcium binding-related AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 Pfam PF06594 Haemolysin-type calcium binding protein related domain 310 349 8.8E-10 T 11-10-2018 IPR010566 Haemolysin-type calcium binding-related AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 Pfam PF06594 Haemolysin-type calcium binding protein related domain 183 222 8.8E-10 T 11-10-2018 IPR010566 Haemolysin-type calcium binding-related AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 Pfam PF06594 Haemolysin-type calcium binding protein related domain 800 839 8.8E-10 T 11-10-2018 IPR010566 Haemolysin-type calcium binding-related AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 SUPERFAMILY SSF51120 102 222 1.09E-17 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 SUPERFAMILY SSF51120 719 839 6.41E-17 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 SUPERFAMILY SSF51120 358 458 1.44E-12 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 880 898 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 SUPERFAMILY SSF51120 465 585 3.27E-17 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 SUPERFAMILY SSF51120 2 95 1.83E-8 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 PRINTS PR00313 NodO calcium binding signature 231 239 2.8E-6 T 11-10-2018 AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 PRINTS PR00313 NodO calcium binding signature 101 112 2.8E-6 T 11-10-2018 AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 PRINTS PR00313 NodO calcium binding signature 467 475 2.8E-6 T 11-10-2018 AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 PRINTS PR00313 NodO calcium binding signature 494 503 2.8E-6 T 11-10-2018 AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 Gene3D G3DSA:2.150.10.10 844 970 1.0E-21 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 SUPERFAMILY SSF51120 845 951 2.75E-18 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 Gene3D G3DSA:2.150.10.10 463 589 3.0E-25 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 Gene3D G3DSA:2.150.10.10 98 226 4.0E-26 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 Gene3D G3DSA:2.150.10.10 1 97 1.1E-16 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 Gene3D G3DSA:2.150.10.10 356 462 9.8E-21 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 Gene3D G3DSA:2.150.10.10 590 715 4.3E-26 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 Gene3D G3DSA:2.150.10.10 227 355 3.4E-26 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 Gene3D G3DSA:2.150.10.10 716 843 4.2E-26 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 613 627 0.027 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 867 882 0.016 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 594 609 2.3 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 486 500 0.027 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 721 736 2.3 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 848 863 2.3 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 740 754 0.027 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 467 482 2.3 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 250 264 0.027 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 104 119 2.3 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 883 900 0.53 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 357 373 0.0018 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 231 246 2.3 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_13525 a27cc3451d97dd73dda556566f6bee27 973 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 123 137 0.027 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_21000 9a4e170b1dda3f60bdf58aa8b170395c 145 Pfam PF13763 Domain of unknown function (DUF4167) 29 97 5.8E-32 T 11-10-2018 IPR025430 Domain of unknown function DUF4167 AMK58_00600 895f11694698e2c37611d9439ba1346f 300 Gene3D G3DSA:1.10.10.10 206 290 1.8E-31 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_00600 895f11694698e2c37611d9439ba1346f 300 SUPERFAMILY SSF46689 16 67 1.26E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_00600 895f11694698e2c37611d9439ba1346f 300 Gene3D G3DSA:3.30.160.70 114 190 8.0E-15 T 11-10-2018 AMK58_00600 895f11694698e2c37611d9439ba1346f 300 Pfam PF12833 Helix-turn-helix domain 39 115 5.0E-18 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMK58_00600 895f11694698e2c37611d9439ba1346f 300 SUPERFAMILY SSF46767 208 289 6.54E-29 T 11-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 AMK58_00600 895f11694698e2c37611d9439ba1346f 300 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 209 288 1.4E-30 T 11-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 AMK58_00600 895f11694698e2c37611d9439ba1346f 300 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 259 265 - T 11-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 AMK58_00600 895f11694698e2c37611d9439ba1346f 300 Gene3D G3DSA:1.10.10.60 17 113 4.0E-20 T 11-10-2018 AMK58_00600 895f11694698e2c37611d9439ba1346f 300 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 211 289 4.3E-28 T 11-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 AMK58_00600 895f11694698e2c37611d9439ba1346f 300 SMART SM00342 33 115 3.0E-16 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMK58_00600 895f11694698e2c37611d9439ba1346f 300 SUPERFAMILY SSF53155 121 188 1.04E-16 T 11-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 AMK58_05730 e60c191d7b0196b9da4a31032c69a4ba 288 PIRSF PIRSF000103 6 286 2.9E-41 T 11-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 AMK58_05730 e60c191d7b0196b9da4a31032c69a4ba 288 SUPERFAMILY SSF51735 10 169 2.28E-30 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_05730 e60c191d7b0196b9da4a31032c69a4ba 288 Gene3D G3DSA:1.10.1040.10 173 223 1.4E-11 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMK58_05730 e60c191d7b0196b9da4a31032c69a4ba 288 Gene3D G3DSA:3.40.50.720 8 171 1.6E-37 T 11-10-2018 AMK58_05730 e60c191d7b0196b9da4a31032c69a4ba 288 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 173 217 6.0E-12 T 11-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 AMK58_05730 e60c191d7b0196b9da4a31032c69a4ba 288 SUPERFAMILY SSF48179 171 283 2.61E-21 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMK58_05730 e60c191d7b0196b9da4a31032c69a4ba 288 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 12 165 4.8E-30 T 11-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 AMK58_05730 e60c191d7b0196b9da4a31032c69a4ba 288 Gene3D G3DSA:1.10.1040.10 224 284 3.9E-7 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMK58_14775 daa5feb016099ee63c74cf9648960458 424 Pfam PF13458 Periplasmic binding protein 49 387 5.6E-43 T 11-10-2018 IPR028081 Leucine-binding protein domain AMK58_14775 daa5feb016099ee63c74cf9648960458 424 SUPERFAMILY SSF53822 49 387 1.29E-58 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMK58_14775 daa5feb016099ee63c74cf9648960458 424 Gene3D G3DSA:3.40.50.2300 163 301 7.0E-60 T 11-10-2018 AMK58_14775 daa5feb016099ee63c74cf9648960458 424 Gene3D G3DSA:3.40.50.2300 50 368 7.0E-60 T 11-10-2018 AMK58_03740 79ad76b6bba90a15d2c4042c67491eda 491 SUPERFAMILY SSF52172 364 489 1.34E-23 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_03740 79ad76b6bba90a15d2c4042c67491eda 491 SMART SM00387 227 336 0.0014 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_03740 79ad76b6bba90a15d2c4042c67491eda 491 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 228 333 1.0E-5 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_03740 79ad76b6bba90a15d2c4042c67491eda 491 SMART SM00388 100 183 4.8E-8 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_03740 79ad76b6bba90a15d2c4042c67491eda 491 Pfam PF00512 His Kinase A (phospho-acceptor) domain 102 183 9.8E-7 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_03740 79ad76b6bba90a15d2c4042c67491eda 491 SUPERFAMILY SSF55874 198 338 1.1E-18 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_03740 79ad76b6bba90a15d2c4042c67491eda 491 Gene3D G3DSA:3.40.50.2300 361 491 1.5E-20 T 11-10-2018 AMK58_03740 79ad76b6bba90a15d2c4042c67491eda 491 SMART SM00448 366 480 4.7E-15 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_03740 79ad76b6bba90a15d2c4042c67491eda 491 Gene3D G3DSA:3.30.565.10 194 340 3.4E-17 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_03740 79ad76b6bba90a15d2c4042c67491eda 491 Pfam PF00072 Response regulator receiver domain 368 480 2.4E-14 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_03740 79ad76b6bba90a15d2c4042c67491eda 491 Gene3D G3DSA:1.10.287.130 94 185 2.6E-7 T 11-10-2018 AMK58_03740 79ad76b6bba90a15d2c4042c67491eda 491 SUPERFAMILY SSF47384 101 183 1.39E-7 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_22035 cc3f5e9d504c61f3904f105b6c29ac40 335 Gene3D G3DSA:3.40.50.720 4 298 3.0E-95 T 11-10-2018 AMK58_22035 cc3f5e9d504c61f3904f105b6c29ac40 335 SUPERFAMILY SSF51735 1 314 3.66E-96 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_22035 cc3f5e9d504c61f3904f105b6c29ac40 335 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 241 6.8E-59 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMK58_22035 cc3f5e9d504c61f3904f105b6c29ac40 335 PRINTS PR01713 Nucleotide sugar epimerase signature 277 294 1.4E-5 T 11-10-2018 AMK58_22035 cc3f5e9d504c61f3904f105b6c29ac40 335 PRINTS PR01713 Nucleotide sugar epimerase signature 235 250 1.4E-5 T 11-10-2018 AMK58_22035 cc3f5e9d504c61f3904f105b6c29ac40 335 PRINTS PR01713 Nucleotide sugar epimerase signature 212 227 1.4E-5 T 11-10-2018 AMK58_22035 cc3f5e9d504c61f3904f105b6c29ac40 335 Gene3D G3DSA:3.90.25.10 172 310 3.0E-95 T 11-10-2018 AMK58_00665 bf00e0ee5e67bec47b712f22b29ab69b 183 Hamap MF_01924 D-alanyl-D-alanine dipeptidase [ddpX]. 1 176 26.328 T 11-10-2018 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 AMK58_00665 bf00e0ee5e67bec47b712f22b29ab69b 183 SUPERFAMILY SSF55166 3 167 6.02E-54 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AMK58_00665 bf00e0ee5e67bec47b712f22b29ab69b 183 Gene3D G3DSA:3.30.1380.10 2 171 1.3E-45 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AMK58_00665 bf00e0ee5e67bec47b712f22b29ab69b 183 PIRSF PIRSF026671 2 178 7.3E-49 T 11-10-2018 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 AMK58_00665 bf00e0ee5e67bec47b712f22b29ab69b 183 Pfam PF01427 D-ala-D-ala dipeptidase 11 174 1.0E-43 T 11-10-2018 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 AMK58_04465 f39e5efe9994b763e7ebab322d962161 394 Gene3D G3DSA:3.40.50.2000 171 394 3.9E-30 T 11-10-2018 AMK58_04465 f39e5efe9994b763e7ebab322d962161 394 SUPERFAMILY SSF53756 130 394 7.33E-31 T 11-10-2018 AMK58_04465 f39e5efe9994b763e7ebab322d962161 394 Pfam PF13524 Glycosyl transferases group 1 281 384 2.4E-9 T 11-10-2018 AMK58_20945 867119908276e43ac88f6c416394d80c 334 Gene3D G3DSA:3.40.50.300 56 263 9.6E-83 T 11-10-2018 AMK58_20945 867119908276e43ac88f6c416394d80c 334 Gene3D G3DSA:1.20.5.170 11 55 6.4E-20 T 11-10-2018 AMK58_20945 867119908276e43ac88f6c416394d80c 334 Gene3D G3DSA:1.10.287.130 266 330 4.5E-19 T 11-10-2018 AMK58_20945 867119908276e43ac88f6c416394d80c 334 SUPERFAMILY SSF52540 12 328 1.23E-90 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_20945 867119908276e43ac88f6c416394d80c 334 Pfam PF03308 ArgK protein 27 296 2.2E-104 T 11-10-2018 AMK58_20945 867119908276e43ac88f6c416394d80c 334 TIGRFAM TIGR00750 lao: LAO/AO transport system ATPase 22 326 8.8E-104 T 11-10-2018 IPR005129 SIMIBI class G3E GTPase, ArgK/MeaB GO:0003924|GO:0005525 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 AMK58_05845 600d4095413dd41c5103fd17741abd22 339 Gene3D G3DSA:3.30.2350.10 102 325 2.5E-63 T 11-10-2018 AMK58_05845 600d4095413dd41c5103fd17741abd22 339 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 150 164 - T 11-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMK58_05845 600d4095413dd41c5103fd17741abd22 339 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 18 324 1.9E-63 T 11-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMK58_05845 600d4095413dd41c5103fd17741abd22 339 SUPERFAMILY SSF55120 98 328 1.5E-60 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMK58_05845 600d4095413dd41c5103fd17741abd22 339 SUPERFAMILY SSF55174 21 70 3.3E-6 T 11-10-2018 AMK58_05845 600d4095413dd41c5103fd17741abd22 339 Pfam PF00849 RNA pseudouridylate synthase 110 261 9.2E-37 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMK58_05845 600d4095413dd41c5103fd17741abd22 339 Gene3D G3DSA:3.10.290.10 9 73 2.7E-13 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AMK58_07750 07039d8e1edb2a52f6fb7e4c2da11797 885 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 17 570 1.2E-215 T 11-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMK58_07750 07039d8e1edb2a52f6fb7e4c2da11797 885 Gene3D G3DSA:1.10.287.380 812 884 1.0E-21 T 11-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 AMK58_07750 07039d8e1edb2a52f6fb7e4c2da11797 885 Gene3D G3DSA:3.40.50.620 24 532 0.0 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_07750 07039d8e1edb2a52f6fb7e4c2da11797 885 SUPERFAMILY SSF46589 819 883 2.98E-16 T 11-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 AMK58_07750 07039d8e1edb2a52f6fb7e4c2da11797 885 Gene3D G3DSA:1.10.730.10 4 747 0.0 T 11-10-2018 AMK58_07750 07039d8e1edb2a52f6fb7e4c2da11797 885 Hamap MF_02004 Valine--tRNA ligase [valS]. 4 884 16.113 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AMK58_07750 07039d8e1edb2a52f6fb7e4c2da11797 885 SUPERFAMILY SSF47323 584 834 2.06E-58 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMK58_07750 07039d8e1edb2a52f6fb7e4c2da11797 885 TIGRFAM TIGR00422 valS: valine--tRNA ligase 5 863 0.0 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AMK58_07750 07039d8e1edb2a52f6fb7e4c2da11797 885 SUPERFAMILY SSF50677 193 346 2.49E-63 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AMK58_07750 07039d8e1edb2a52f6fb7e4c2da11797 885 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 819 883 9.6E-20 T 11-10-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 AMK58_07750 07039d8e1edb2a52f6fb7e4c2da11797 885 Pfam PF08264 Anticodon-binding domain of tRNA 613 759 2.3E-38 T 11-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 AMK58_07750 07039d8e1edb2a52f6fb7e4c2da11797 885 Gene3D G3DSA:3.90.740.10 177 346 0.0 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AMK58_07750 07039d8e1edb2a52f6fb7e4c2da11797 885 PRINTS PR00986 Valyl-tRNA synthetase signature 452 473 3.1E-38 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AMK58_07750 07039d8e1edb2a52f6fb7e4c2da11797 885 PRINTS PR00986 Valyl-tRNA synthetase signature 483 501 3.1E-38 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AMK58_07750 07039d8e1edb2a52f6fb7e4c2da11797 885 PRINTS PR00986 Valyl-tRNA synthetase signature 233 250 3.1E-38 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AMK58_07750 07039d8e1edb2a52f6fb7e4c2da11797 885 PRINTS PR00986 Valyl-tRNA synthetase signature 350 363 3.1E-38 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AMK58_07750 07039d8e1edb2a52f6fb7e4c2da11797 885 PRINTS PR00986 Valyl-tRNA synthetase signature 38 49 3.1E-38 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AMK58_07750 07039d8e1edb2a52f6fb7e4c2da11797 885 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 45 56 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMK58_07750 07039d8e1edb2a52f6fb7e4c2da11797 885 SUPERFAMILY SSF52374 5 581 1.53E-139 T 11-10-2018 AMK58_02760 7080db9e5433b9d0a674d31bd3590949 142 SUPERFAMILY SSF46785 3 52 8.47E-12 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_02760 7080db9e5433b9d0a674d31bd3590949 142 SUPERFAMILY SSF54909 61 139 1.74E-12 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel AMK58_02760 7080db9e5433b9d0a674d31bd3590949 142 Gene3D G3DSA:3.30.70.920 59 140 4.7E-12 T 11-10-2018 AMK58_02760 7080db9e5433b9d0a674d31bd3590949 142 Pfam PF01037 Lrp/AsnC ligand binding domain 74 135 1.5E-10 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMK58_02760 7080db9e5433b9d0a674d31bd3590949 142 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 15 26 8.5E-7 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMK58_02760 7080db9e5433b9d0a674d31bd3590949 142 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 26 45 8.5E-7 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMK58_02760 7080db9e5433b9d0a674d31bd3590949 142 SMART SM00344 2 105 1.0E-11 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMK58_02760 7080db9e5433b9d0a674d31bd3590949 142 ProSitePatterns PS00519 AsnC-type HTH domain signature. 17 43 - T 11-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site AMK58_02760 7080db9e5433b9d0a674d31bd3590949 142 Gene3D G3DSA:1.10.10.10 1 51 2.0E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_02760 7080db9e5433b9d0a674d31bd3590949 142 Pfam PF13412 Winged helix-turn-helix DNA-binding 3 45 1.1E-13 T 11-10-2018 AMK58_02465 8d59fe80fff4532a23e674c3be774eb4 315 SUPERFAMILY SSF47364 11 88 3.01E-20 T 11-10-2018 IPR036225 SRP/SRP receptor, N-terminal Reactome: R-HSA-1799339 AMK58_02465 8d59fe80fff4532a23e674c3be774eb4 315 Gene3D G3DSA:1.20.120.140 13 309 4.0E-110 T 11-10-2018 AMK58_02465 8d59fe80fff4532a23e674c3be774eb4 315 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 39 311 59.077 T 11-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 AMK58_02465 8d59fe80fff4532a23e674c3be774eb4 315 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 39 309 1.5E-100 T 11-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 AMK58_02465 8d59fe80fff4532a23e674c3be774eb4 315 SMART SM00382 109 289 3.2E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_02465 8d59fe80fff4532a23e674c3be774eb4 315 SMART SM00963 16 95 8.4E-18 T 11-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMK58_02465 8d59fe80fff4532a23e674c3be774eb4 315 Pfam PF02881 SRP54-type protein, helical bundle domain 27 88 1.1E-9 T 11-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMK58_02465 8d59fe80fff4532a23e674c3be774eb4 315 SMART SM00962 110 311 1.8E-113 T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMK58_02465 8d59fe80fff4532a23e674c3be774eb4 315 SUPERFAMILY SSF52540 109 311 2.58E-50 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_02465 8d59fe80fff4532a23e674c3be774eb4 315 Pfam PF00448 SRP54-type protein, GTPase domain 110 310 1.8E-72 T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMK58_02465 8d59fe80fff4532a23e674c3be774eb4 315 Gene3D G3DSA:3.40.50.300 110 299 4.0E-110 T 11-10-2018 AMK58_07100 827bd414baa10d12a23c88414cd0a7f8 131 Pfam PF11127 Protein of unknown function (DUF2892) 16 70 1.1E-10 T 11-10-2018 IPR021309 Protein of unknown function DUF2892 AMK58_17590 8db9f5062ea48d25150de2201cd2ef42 466 SMART SM00448 3 116 1.1E-31 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_17590 8db9f5062ea48d25150de2201cd2ef42 466 Pfam PF02954 Bacterial regulatory protein, Fis family 413 451 2.9E-9 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMK58_17590 8db9f5062ea48d25150de2201cd2ef42 466 SUPERFAMILY SSF52172 4 186 6.83E-40 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_17590 8db9f5062ea48d25150de2201cd2ef42 466 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 226 241 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AMK58_17590 8db9f5062ea48d25150de2201cd2ef42 466 Gene3D G3DSA:1.10.10.60 405 456 1.5E-12 T 11-10-2018 AMK58_17590 8db9f5062ea48d25150de2201cd2ef42 466 Gene3D G3DSA:3.40.50.2300 2 130 4.6E-35 T 11-10-2018 AMK58_17590 8db9f5062ea48d25150de2201cd2ef42 466 SMART SM00382 162 303 1.6E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_17590 8db9f5062ea48d25150de2201cd2ef42 466 Pfam PF00072 Response regulator receiver domain 5 116 2.8E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_17590 8db9f5062ea48d25150de2201cd2ef42 466 Gene3D G3DSA:1.10.8.60 312 387 1.3E-23 T 11-10-2018 AMK58_17590 8db9f5062ea48d25150de2201cd2ef42 466 Gene3D G3DSA:3.40.50.300 131 311 5.2E-53 T 11-10-2018 AMK58_17590 8db9f5062ea48d25150de2201cd2ef42 466 SUPERFAMILY SSF52540 141 374 2.5E-64 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_17590 8db9f5062ea48d25150de2201cd2ef42 466 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 353 362 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site AMK58_17590 8db9f5062ea48d25150de2201cd2ef42 466 Pfam PF00158 Sigma-54 interaction domain 142 306 1.0E-53 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AMK58_17590 8db9f5062ea48d25150de2201cd2ef42 466 SUPERFAMILY SSF46689 353 455 7.62E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_14885 f6a5524ff9657ec754d8ae72c352ba60 219 Gene3D G3DSA:3.40.109.10 1 189 3.9E-59 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AMK58_14885 f6a5524ff9657ec754d8ae72c352ba60 219 TIGRFAM TIGR02476 BluB: 5,6-dimethylbenzimidazole synthase 6 210 6.9E-88 T 11-10-2018 IPR012825 5,6-dimethylbenzimidazole synthase BluB KEGG: 00740+1.13.11.79|MetaCyc: PWY-5523 AMK58_14885 f6a5524ff9657ec754d8ae72c352ba60 219 SUPERFAMILY SSF55469 14 216 1.57E-55 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AMK58_14885 f6a5524ff9657ec754d8ae72c352ba60 219 Pfam PF00881 Nitroreductase family 18 185 6.2E-30 T 11-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 AMK58_16200 671ce73d9eac3c6866bca947e5476bf8 270 Gene3D G3DSA:1.10.1740.10 1 67 4.9E-20 T 11-10-2018 AMK58_16200 671ce73d9eac3c6866bca947e5476bf8 270 Pfam PF08281 Sigma-70, region 4 99 150 2.0E-14 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMK58_16200 671ce73d9eac3c6866bca947e5476bf8 270 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 9 154 4.9E-23 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMK58_16200 671ce73d9eac3c6866bca947e5476bf8 270 Pfam PF04542 Sigma-70 region 2 13 75 2.8E-14 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMK58_16200 671ce73d9eac3c6866bca947e5476bf8 270 SUPERFAMILY SSF88946 4 85 4.71E-18 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMK58_16200 671ce73d9eac3c6866bca947e5476bf8 270 Gene3D G3DSA:1.10.10.10 96 160 2.0E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_16200 671ce73d9eac3c6866bca947e5476bf8 270 SUPERFAMILY SSF88659 93 155 1.51E-14 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMK58_09290 1d0bba1f259dbaf5116a64b9a8577524 250 Pfam PF01709 Transcriptional regulator 5 237 1.5E-89 T 11-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_09290 1d0bba1f259dbaf5116a64b9a8577524 250 Gene3D G3DSA:3.30.70.980 85 235 4.3E-50 T 11-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_09290 1d0bba1f259dbaf5116a64b9a8577524 250 Gene3D G3DSA:3.30.70.980 134 206 4.3E-50 T 11-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_09290 1d0bba1f259dbaf5116a64b9a8577524 250 SUPERFAMILY SSF75625 3 247 9.03E-89 T 11-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_09290 1d0bba1f259dbaf5116a64b9a8577524 250 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 240 33.612 T 11-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_09290 1d0bba1f259dbaf5116a64b9a8577524 250 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 238 3.9E-94 T 11-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_09290 1d0bba1f259dbaf5116a64b9a8577524 250 Gene3D G3DSA:1.10.10.200 1 82 1.4E-31 T 11-10-2018 IPR017856 Integrase-like, N-terminal AMK58_19850 b386768c463c3a4d8395ec60fb2d40bf 348 Gene3D G3DSA:1.10.10.10 263 338 6.2E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_19850 b386768c463c3a4d8395ec60fb2d40bf 348 SUPERFAMILY SSF55811 59 151 9.12E-10 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMK58_19850 b386768c463c3a4d8395ec60fb2d40bf 348 PIRSF PIRSF019423 2 346 4.2E-109 T 11-10-2018 IPR011213 Nicotinic acid mononucleotide biosynthesis protein AMK58_19850 b386768c463c3a4d8395ec60fb2d40bf 348 SUPERFAMILY SSF46785 267 337 2.58E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_07555 42a021fbc9ffe3b6189e7349d51f0092 165 SUPERFAMILY SSF47741 87 159 5.63E-34 T 11-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily AMK58_07555 42a021fbc9ffe3b6189e7349d51f0092 165 Gene3D G3DSA:3.10.20.30 2 76 7.3E-30 T 11-10-2018 IPR012675 Beta-grasp domain superfamily AMK58_07555 42a021fbc9ffe3b6189e7349d51f0092 165 Pfam PF01799 [2Fe-2S] binding domain 75 148 2.5E-31 T 11-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMK58_07555 42a021fbc9ffe3b6189e7349d51f0092 165 SUPERFAMILY SSF54292 4 80 9.7E-25 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMK58_07555 42a021fbc9ffe3b6189e7349d51f0092 165 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 8 61 2.5E-5 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMK58_07555 42a021fbc9ffe3b6189e7349d51f0092 165 Gene3D G3DSA:1.10.150.120 77 165 1.8E-34 T 11-10-2018 AMK58_26045 3a928c5669b6a1bf14194cc7de765457 254 SMART SM00893 23 216 1.9E-70 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AMK58_26045 3a928c5669b6a1bf14194cc7de765457 254 PIRSF PIRSF000090 1 254 2.5E-89 T 11-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 AMK58_26045 3a928c5669b6a1bf14194cc7de765457 254 Pfam PF01012 Electron transfer flavoprotein domain 26 211 1.1E-48 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AMK58_26045 3a928c5669b6a1bf14194cc7de765457 254 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 160 180 - T 11-10-2018 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 AMK58_26045 3a928c5669b6a1bf14194cc7de765457 254 SUPERFAMILY SSF52402 1 247 7.67E-87 T 11-10-2018 AMK58_26045 3a928c5669b6a1bf14194cc7de765457 254 Gene3D G3DSA:3.40.50.620 1 252 4.6E-90 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_14715 3a928c5669b6a1bf14194cc7de765457 254 SMART SM00893 23 216 1.9E-70 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AMK58_14715 3a928c5669b6a1bf14194cc7de765457 254 PIRSF PIRSF000090 1 254 2.5E-89 T 11-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 AMK58_14715 3a928c5669b6a1bf14194cc7de765457 254 Pfam PF01012 Electron transfer flavoprotein domain 26 211 1.1E-48 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AMK58_14715 3a928c5669b6a1bf14194cc7de765457 254 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 160 180 - T 11-10-2018 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 AMK58_14715 3a928c5669b6a1bf14194cc7de765457 254 SUPERFAMILY SSF52402 1 247 7.67E-87 T 11-10-2018 AMK58_14715 3a928c5669b6a1bf14194cc7de765457 254 Gene3D G3DSA:3.40.50.620 1 252 4.6E-90 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_07520 7996532346fd8506f4b6a45d17f3bb9b 536 Gene3D G3DSA:3.40.980.10 148 303 3.5E-13 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily AMK58_07520 7996532346fd8506f4b6a45d17f3bb9b 536 SUPERFAMILY SSF53218 182 306 2.36E-15 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily AMK58_07520 7996532346fd8506f4b6a45d17f3bb9b 536 PIRSF PIRSF036626 1 536 4.8E-193 T 11-10-2018 IPR012184 Bifunctional molybdopterin binding protein /nucleotidyl transferase, putative AMK58_07520 7996532346fd8506f4b6a45d17f3bb9b 536 Gene3D G3DSA:3.90.550.10 341 535 6.5E-59 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_07520 7996532346fd8506f4b6a45d17f3bb9b 536 Pfam PF12804 MobA-like NTP transferase domain 346 509 7.7E-41 T 11-10-2018 IPR025877 MobA-like NTP transferase AMK58_07520 7996532346fd8506f4b6a45d17f3bb9b 536 SUPERFAMILY SSF53448 342 529 4.06E-38 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_07520 7996532346fd8506f4b6a45d17f3bb9b 536 SMART SM00852 171 302 2.4E-4 T 11-10-2018 IPR001453 MoaB/Mog domain AMK58_16545 0cdb5b1aff94a2c8c90fa15629c157a3 361 SUPERFAMILY SSF53800 16 344 1.64E-105 T 11-10-2018 AMK58_16545 0cdb5b1aff94a2c8c90fa15629c157a3 361 Gene3D G3DSA:3.40.50.1400 182 321 1.1E-96 T 11-10-2018 AMK58_16545 0cdb5b1aff94a2c8c90fa15629c157a3 361 Pfam PF00762 Ferrochelatase 18 339 1.1E-111 T 11-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 AMK58_16545 0cdb5b1aff94a2c8c90fa15629c157a3 361 ProSitePatterns PS00534 Ferrochelatase signature. 209 227 - T 11-10-2018 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 AMK58_16545 0cdb5b1aff94a2c8c90fa15629c157a3 361 Hamap MF_00323 Ferrochelatase [hemH]. 16 340 37.422 T 11-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 AMK58_16545 0cdb5b1aff94a2c8c90fa15629c157a3 361 Gene3D G3DSA:3.40.50.1400 18 340 1.1E-96 T 11-10-2018 AMK58_16545 0cdb5b1aff94a2c8c90fa15629c157a3 361 TIGRFAM TIGR00109 hemH: ferrochelatase 16 340 1.4E-86 T 11-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 AMK58_02335 6062e8cf2ff12d0b5fdf79fd0ef42cce 385 SMART SM00331 169 383 3.7E-16 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AMK58_02335 6062e8cf2ff12d0b5fdf79fd0ef42cce 385 SMART SM00448 8 122 1.8E-37 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_02335 6062e8cf2ff12d0b5fdf79fd0ef42cce 385 SUPERFAMILY SSF52172 9 149 1.42E-39 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_02335 6062e8cf2ff12d0b5fdf79fd0ef42cce 385 Gene3D G3DSA:3.40.50.2300 5 137 5.5E-39 T 11-10-2018 AMK58_02335 6062e8cf2ff12d0b5fdf79fd0ef42cce 385 Gene3D G3DSA:3.60.40.10 138 384 1.4E-46 T 11-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AMK58_02335 6062e8cf2ff12d0b5fdf79fd0ef42cce 385 Pfam PF00072 Response regulator receiver domain 10 122 1.4E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_02335 6062e8cf2ff12d0b5fdf79fd0ef42cce 385 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 196 383 1.6E-31 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AMK58_29030 53bacc95b6246d2112827c720bbafaa1 341 Gene3D G3DSA:3.90.550.10 12 249 1.2E-43 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_29030 53bacc95b6246d2112827c720bbafaa1 341 SUPERFAMILY SSF53448 22 262 1.18E-48 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_29030 53bacc95b6246d2112827c720bbafaa1 341 Pfam PF00535 Glycosyl transferase family 2 28 142 2.0E-20 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMK58_00610 95c9d345ec4c12832a22d5578bde2c45 215 Gene3D G3DSA:1.10.340.30 21 132 3.2E-75 T 11-10-2018 AMK58_00610 95c9d345ec4c12832a22d5578bde2c45 215 SUPERFAMILY SSF48150 6 207 8.01E-70 T 11-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 AMK58_00610 95c9d345ec4c12832a22d5578bde2c45 215 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 187 203 1.5E-5 T 11-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 AMK58_00610 95c9d345ec4c12832a22d5578bde2c45 215 Hamap MF_00942 Endonuclease III [nth]. 1 209 37.252 T 11-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 AMK58_00610 95c9d345ec4c12832a22d5578bde2c45 215 PIRSF PIRSF001435 2 209 4.6E-47 T 11-10-2018 AMK58_00610 95c9d345ec4c12832a22d5578bde2c45 215 Pfam PF00633 Helix-hairpin-helix motif 100 127 1.1E-8 T 11-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 AMK58_00610 95c9d345ec4c12832a22d5578bde2c45 215 ProSitePatterns PS01155 Endonuclease III family signature. 102 131 - T 11-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 AMK58_00610 95c9d345ec4c12832a22d5578bde2c45 215 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 34 168 1.4E-18 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AMK58_00610 95c9d345ec4c12832a22d5578bde2c45 215 SMART SM00525 186 206 2.9E-4 T 11-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 AMK58_00610 95c9d345ec4c12832a22d5578bde2c45 215 Gene3D G3DSA:1.10.1670.10 11 203 3.2E-75 T 11-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 AMK58_00610 95c9d345ec4c12832a22d5578bde2c45 215 SMART SM00478 38 185 6.0E-50 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AMK58_00610 95c9d345ec4c12832a22d5578bde2c45 215 TIGRFAM TIGR01083 nth: endonuclease III 6 194 2.4E-81 T 11-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 AMK58_08605 5a7d6dd35740d92498d0bd0272e8a5de 447 Pfam PF07690 Major Facilitator Superfamily 22 397 1.1E-24 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMK58_08605 5a7d6dd35740d92498d0bd0272e8a5de 447 Gene3D G3DSA:1.20.1250.20 10 207 6.5E-14 T 11-10-2018 AMK58_08605 5a7d6dd35740d92498d0bd0272e8a5de 447 Gene3D G3DSA:1.20.1250.20 245 445 1.2E-12 T 11-10-2018 AMK58_08605 5a7d6dd35740d92498d0bd0272e8a5de 447 SUPERFAMILY SSF103473 14 440 3.14E-41 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_00415 494a638a0fdfdee27c60f42a822d5d1f 202 Gene3D G3DSA:3.90.950.10 6 201 3.8E-49 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AMK58_00415 494a638a0fdfdee27c60f42a822d5d1f 202 SUPERFAMILY SSF52972 6 195 1.7E-46 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AMK58_00415 494a638a0fdfdee27c60f42a822d5d1f 202 PIRSF PIRSF006305 5 200 7.0E-41 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 AMK58_00415 494a638a0fdfdee27c60f42a822d5d1f 202 Hamap MF_00528 Septum formation protein Maf [maf]. 7 201 24.068 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 AMK58_00415 494a638a0fdfdee27c60f42a822d5d1f 202 Pfam PF02545 Maf-like protein 8 195 2.0E-37 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 AMK58_11100 7910d4b2b8bab77bfd6448eda20c9ed4 235 Gene3D G3DSA:1.20.120.530 99 234 5.5E-29 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_11100 7910d4b2b8bab77bfd6448eda20c9ed4 235 SMART SM00345 17 76 3.8E-19 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_11100 7910d4b2b8bab77bfd6448eda20c9ed4 235 Gene3D G3DSA:1.10.10.10 15 89 3.0E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_11100 7910d4b2b8bab77bfd6448eda20c9ed4 235 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 1.7E-9 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_11100 7910d4b2b8bab77bfd6448eda20c9ed4 235 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 1.7E-9 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_11100 7910d4b2b8bab77bfd6448eda20c9ed4 235 SUPERFAMILY SSF48008 100 233 1.36E-25 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_11100 7910d4b2b8bab77bfd6448eda20c9ed4 235 SMART SM00895 102 227 7.8E-21 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_11100 7910d4b2b8bab77bfd6448eda20c9ed4 235 Pfam PF07729 FCD domain 102 226 3.1E-21 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_11100 7910d4b2b8bab77bfd6448eda20c9ed4 235 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 76 6.0E-19 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_11100 7910d4b2b8bab77bfd6448eda20c9ed4 235 SUPERFAMILY SSF46785 14 80 9.23E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_04745 7b1fa4f1382f2cce65ae9f539ef33f37 519 SUPERFAMILY SSF53146 381 492 1.44E-31 T 11-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily AMK58_04745 7b1fa4f1382f2cce65ae9f539ef33f37 519 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 74 85 - T 11-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMK58_04745 7b1fa4f1382f2cce65ae9f539ef33f37 519 Pfam PF04055 Radical SAM superfamily 74 253 7.6E-24 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMK58_04745 7b1fa4f1382f2cce65ae9f539ef33f37 519 Gene3D G3DSA:3.30.420.130 377 494 2.4E-28 T 11-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily AMK58_04745 7b1fa4f1382f2cce65ae9f539ef33f37 519 Gene3D G3DSA:3.20.20.70 61 351 2.3E-28 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_04745 7b1fa4f1382f2cce65ae9f539ef33f37 519 SUPERFAMILY SSF102114 62 277 7.32E-34 T 11-10-2018 AMK58_04745 7b1fa4f1382f2cce65ae9f539ef33f37 519 TIGRFAM TIGR01290 nifB: nitrogenase cofactor biosynthesis protein NifB 46 485 7.3E-202 T 11-10-2018 IPR005980 Nitrogenase cofactor biosynthesis protein NifB GO:0009108|GO:0009399 AMK58_04745 7b1fa4f1382f2cce65ae9f539ef33f37 519 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 392 481 1.2E-21 T 11-10-2018 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis AMK58_27980 e4d91f8a2367640314356c3e2b5f16fa 368 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 17 79 3.3E-6 T 11-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 AMK58_27980 e4d91f8a2367640314356c3e2b5f16fa 368 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 122 190 2.4E-6 T 11-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 AMK58_27980 e4d91f8a2367640314356c3e2b5f16fa 368 Gene3D G3DSA:1.10.150.130 9 104 4.2E-21 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal AMK58_27980 e4d91f8a2367640314356c3e2b5f16fa 368 Gene3D G3DSA:1.10.150.130 111 217 8.6E-25 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal AMK58_27980 e4d91f8a2367640314356c3e2b5f16fa 368 SUPERFAMILY SSF47823 15 97 5.69E-21 T 11-10-2018 AMK58_27980 e4d91f8a2367640314356c3e2b5f16fa 368 SUPERFAMILY SSF56349 215 308 7.85E-11 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMK58_27980 e4d91f8a2367640314356c3e2b5f16fa 368 SUPERFAMILY SSF47823 112 216 7.85E-25 T 11-10-2018 AMK58_27980 e4d91f8a2367640314356c3e2b5f16fa 368 Gene3D G3DSA:1.10.443.10 218 351 4.7E-15 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMK58_18065 0d076f94c78854e123e06565c46a25e3 692 SUPERFAMILY SSF55785 145 256 5.11E-27 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_18065 0d076f94c78854e123e06565c46a25e3 692 Gene3D G3DSA:3.30.450.20 9 120 4.5E-12 T 11-10-2018 AMK58_18065 0d076f94c78854e123e06565c46a25e3 692 SUPERFAMILY SSF55073 266 425 4.63E-30 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_18065 0d076f94c78854e123e06565c46a25e3 692 SMART SM00267 250 423 2.9E-25 T 11-10-2018 IPR000160 GGDEF domain AMK58_18065 0d076f94c78854e123e06565c46a25e3 692 SMART SM00052 433 679 2.2E-100 T 11-10-2018 IPR001633 EAL domain AMK58_18065 0d076f94c78854e123e06565c46a25e3 692 Pfam PF13426 PAS domain 145 249 2.1E-12 T 11-10-2018 IPR000014 PAS domain AMK58_18065 0d076f94c78854e123e06565c46a25e3 692 Gene3D G3DSA:3.20.20.450 434 688 3.1E-92 T 11-10-2018 IPR035919 EAL domain superfamily AMK58_18065 0d076f94c78854e123e06565c46a25e3 692 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 260 421 1.2E-20 T 11-10-2018 IPR000160 GGDEF domain AMK58_18065 0d076f94c78854e123e06565c46a25e3 692 Pfam PF08448 PAS fold 18 122 1.6E-9 T 11-10-2018 IPR013656 PAS fold-4 AMK58_18065 0d076f94c78854e123e06565c46a25e3 692 SUPERFAMILY SSF55785 12 120 9.03E-14 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_18065 0d076f94c78854e123e06565c46a25e3 692 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 138 256 1.9E-26 T 11-10-2018 IPR000014 PAS domain AMK58_18065 0d076f94c78854e123e06565c46a25e3 692 Gene3D G3DSA:3.30.450.20 135 251 1.3E-30 T 11-10-2018 AMK58_18065 0d076f94c78854e123e06565c46a25e3 692 SMART SM00086 81 122 6.2 T 11-10-2018 IPR001610 PAC motif AMK58_18065 0d076f94c78854e123e06565c46a25e3 692 SMART SM00086 210 250 12.0 T 11-10-2018 IPR001610 PAC motif AMK58_18065 0d076f94c78854e123e06565c46a25e3 692 SMART SM00091 134 200 1.6E-9 T 11-10-2018 IPR000014 PAS domain AMK58_18065 0d076f94c78854e123e06565c46a25e3 692 SMART SM00091 10 76 0.015 T 11-10-2018 IPR000014 PAS domain AMK58_18065 0d076f94c78854e123e06565c46a25e3 692 Pfam PF00563 EAL domain 441 674 2.9E-69 T 11-10-2018 IPR001633 EAL domain AMK58_18065 0d076f94c78854e123e06565c46a25e3 692 SUPERFAMILY SSF141868 441 686 3.79E-83 T 11-10-2018 IPR035919 EAL domain superfamily AMK58_18065 0d076f94c78854e123e06565c46a25e3 692 Pfam PF00990 Diguanylate cyclase, GGDEF domain 261 418 6.7E-23 T 11-10-2018 IPR000160 GGDEF domain AMK58_18065 0d076f94c78854e123e06565c46a25e3 692 Gene3D G3DSA:3.30.70.270 260 429 3.1E-35 T 11-10-2018 AMK58_12850 ca470a7fd6617dc0abc9e471294c5873 315 SUPERFAMILY SSF54534 150 250 8.5E-34 T 11-10-2018 AMK58_12850 ca470a7fd6617dc0abc9e471294c5873 315 Pfam PF13616 PPIC-type PPIASE domain 152 252 2.2E-28 T 11-10-2018 AMK58_12850 ca470a7fd6617dc0abc9e471294c5873 315 SUPERFAMILY SSF109998 51 189 5.1E-17 T 11-10-2018 IPR027304 Trigger factor/SurA domain superfamily AMK58_12850 ca470a7fd6617dc0abc9e471294c5873 315 Gene3D G3DSA:3.10.50.40 152 275 1.0E-39 T 11-10-2018 AMK58_13920 2b6161284800f1307074306010396a64 327 Gene3D G3DSA:3.30.200.20 27 100 2.6E-53 T 11-10-2018 AMK58_13920 2b6161284800f1307074306010396a64 327 Gene3D G3DSA:3.30.470.20 101 240 2.6E-53 T 11-10-2018 AMK58_13920 2b6161284800f1307074306010396a64 327 SUPERFAMILY SSF56104 17 303 3.6E-87 T 11-10-2018 AMK58_13920 2b6161284800f1307074306010396a64 327 Pfam PF01259 SAICAR synthetase 26 277 4.7E-81 T 11-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMK58_13920 2b6161284800f1307074306010396a64 327 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 23 300 22.496 T 11-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMK58_13920 2b6161284800f1307074306010396a64 327 ProSitePatterns PS01058 SAICAR synthetase signature 2. 208 216 - T 11-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMK58_18850 2c15e257b225ddad82018bcfc9188491 598 Pfam PF05947 Type VI secretion system, TssF 7 596 5.0E-189 T 11-10-2018 IPR010272 Type VI secretion system, TssF-like AMK58_18850 2c15e257b225ddad82018bcfc9188491 598 TIGRFAM TIGR03359 VI_chp_6: type VI secretion protein, TIGR03359 family 6 598 1.3E-176 T 11-10-2018 IPR010272 Type VI secretion system, TssF-like AMK58_18850 2c15e257b225ddad82018bcfc9188491 598 PIRSF PIRSF028304 2 597 4.6E-168 T 11-10-2018 IPR010272 Type VI secretion system, TssF-like AMK58_26180 c43c8384023ff94cf5c23dc64c6b5d31 264 Gene3D G3DSA:1.10.10.10 125 238 4.9E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_26180 c43c8384023ff94cf5c23dc64c6b5d31 264 SUPERFAMILY SSF46894 120 225 1.67E-21 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMK58_26180 c43c8384023ff94cf5c23dc64c6b5d31 264 SMART SM00862 146 223 7.8E-23 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_26180 c43c8384023ff94cf5c23dc64c6b5d31 264 Gene3D G3DSA:3.40.50.2300 1 124 3.7E-11 T 11-10-2018 AMK58_26180 c43c8384023ff94cf5c23dc64c6b5d31 264 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 223 2.2E-20 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_26180 c43c8384023ff94cf5c23dc64c6b5d31 264 SUPERFAMILY SSF52172 1 134 3.32E-10 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_00760 e338fde8000930e6f0f01bf978cb9847 910 Gene3D G3DSA:2.40.30.10 580 696 6.6E-41 T 11-10-2018 AMK58_00760 e338fde8000930e6f0f01bf978cb9847 910 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 9 908 17.382 T 11-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 AMK58_00760 e338fde8000930e6f0f01bf978cb9847 910 SUPERFAMILY SSF50447 581 664 4.12E-25 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMK58_00760 e338fde8000930e6f0f01bf978cb9847 910 Pfam PF08364 Bacterial translation initiation factor IF-2 associated region 20 57 2.3E-8 T 11-10-2018 IPR013575 Initiation factor 2 associated domain, bacterial AMK58_00760 e338fde8000930e6f0f01bf978cb9847 910 Gene3D G3DSA:3.40.50.300 404 579 1.3E-71 T 11-10-2018 AMK58_00760 e338fde8000930e6f0f01bf978cb9847 910 SUPERFAMILY SSF50447 812 908 2.95E-32 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMK58_00760 e338fde8000930e6f0f01bf978cb9847 910 SUPERFAMILY SSF52540 405 580 1.13E-50 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_00760 e338fde8000930e6f0f01bf978cb9847 910 Gene3D G3DSA:3.40.50.10050 703 811 1.3E-38 T 11-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily AMK58_00760 e338fde8000930e6f0f01bf978cb9847 910 Gene3D G3DSA:2.40.30.10 812 909 6.0E-33 T 11-10-2018 AMK58_00760 e338fde8000930e6f0f01bf978cb9847 910 Pfam PF00009 Elongation factor Tu GTP binding domain 412 568 1.4E-33 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_00760 e338fde8000930e6f0f01bf978cb9847 910 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 324 908 1.7E-251 T 11-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 AMK58_00760 e338fde8000930e6f0f01bf978cb9847 910 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 410 564 5.2E-34 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMK58_00760 e338fde8000930e6f0f01bf978cb9847 910 ProSitePatterns PS01176 Initiation factor 2 signature. 861 883 - T 11-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 AMK58_00760 e338fde8000930e6f0f01bf978cb9847 910 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 332 381 1.2E-15 T 11-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal AMK58_00760 e338fde8000930e6f0f01bf978cb9847 910 Pfam PF11987 Translation-initiation factor 2 694 800 8.1E-39 T 11-10-2018 IPR023115 Translation initiation factor IF- 2, domain 3 AMK58_00760 e338fde8000930e6f0f01bf978cb9847 910 SUPERFAMILY SSF52156 691 817 3.14E-37 T 11-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily AMK58_19160 c6c547bab6673a3525db2ace9bfd532b 364 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 11 360 8.0E-93 T 11-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 AMK58_19160 c6c547bab6673a3525db2ace9bfd532b 364 SUPERFAMILY SSF53383 12 362 6.25E-85 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_19160 c6c547bab6673a3525db2ace9bfd532b 364 Gene3D G3DSA:3.90.1150.10 17 354 1.5E-105 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_19160 c6c547bab6673a3525db2ace9bfd532b 364 Gene3D G3DSA:3.40.640.10 40 264 1.5E-105 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_19160 c6c547bab6673a3525db2ace9bfd532b 364 Pfam PF00155 Aminotransferase class I and II 29 358 2.4E-52 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMK58_19160 c6c547bab6673a3525db2ace9bfd532b 364 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 9 362 58.54 T 11-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 AMK58_23425 530e0375f5d2314ce0ad7cc957ad1636 231 Pfam PF00072 Response regulator receiver domain 5 114 2.3E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_23425 530e0375f5d2314ce0ad7cc957ad1636 231 Gene3D G3DSA:3.40.50.2300 1 129 4.2E-39 T 11-10-2018 AMK58_23425 530e0375f5d2314ce0ad7cc957ad1636 231 SMART SM00448 3 113 4.0E-41 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_23425 530e0375f5d2314ce0ad7cc957ad1636 231 SMART SM00862 153 229 1.4E-23 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_23425 530e0375f5d2314ce0ad7cc957ad1636 231 SUPERFAMILY SSF52172 3 174 3.42E-41 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_23425 530e0375f5d2314ce0ad7cc957ad1636 231 Gene3D G3DSA:1.10.10.10 133 231 4.0E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_23425 530e0375f5d2314ce0ad7cc957ad1636 231 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 228 3.8E-23 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_21790 dcf35948248486097d0df52a813cc964 94 Gene3D G3DSA:4.10.520.10 1 94 2.0E-35 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 AMK58_21790 dcf35948248486097d0df52a813cc964 94 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 9.6E-18 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMK58_21790 dcf35948248486097d0df52a813cc964 94 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 9.6E-18 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMK58_21790 dcf35948248486097d0df52a813cc964 94 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 9.6E-18 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMK58_21790 dcf35948248486097d0df52a813cc964 94 Pfam PF00216 Bacterial DNA-binding protein 1 90 1.7E-33 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMK58_21790 dcf35948248486097d0df52a813cc964 94 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 11-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 AMK58_21790 dcf35948248486097d0df52a813cc964 94 SUPERFAMILY SSF47729 1 91 1.12E-32 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 AMK58_21790 dcf35948248486097d0df52a813cc964 94 SMART SM00411 1 90 6.3E-44 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMK58_21855 dcf35948248486097d0df52a813cc964 94 Gene3D G3DSA:4.10.520.10 1 94 2.0E-35 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 AMK58_21855 dcf35948248486097d0df52a813cc964 94 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 9.6E-18 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMK58_21855 dcf35948248486097d0df52a813cc964 94 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 9.6E-18 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMK58_21855 dcf35948248486097d0df52a813cc964 94 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 9.6E-18 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMK58_21855 dcf35948248486097d0df52a813cc964 94 Pfam PF00216 Bacterial DNA-binding protein 1 90 1.7E-33 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMK58_21855 dcf35948248486097d0df52a813cc964 94 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 11-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 AMK58_21855 dcf35948248486097d0df52a813cc964 94 SUPERFAMILY SSF47729 1 91 1.12E-32 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 AMK58_21855 dcf35948248486097d0df52a813cc964 94 SMART SM00411 1 90 6.3E-44 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMK58_20910 ab078001669b70e0c034707ccbb0f231 304 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 149 298 3.7E-50 T 11-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 AMK58_20910 ab078001669b70e0c034707ccbb0f231 304 SUPERFAMILY SSF53671 3 301 3.54E-108 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AMK58_20910 ab078001669b70e0c034707ccbb0f231 304 Gene3D G3DSA:3.40.50.1370 13 296 3.9E-115 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AMK58_20910 ab078001669b70e0c034707ccbb0f231 304 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 5 143 4.8E-50 T 11-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 AMK58_20910 ab078001669b70e0c034707ccbb0f231 304 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 5 300 3.9E-114 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AMK58_20910 ab078001669b70e0c034707ccbb0f231 304 PRINTS PR00102 Ornithine carbamoyltransferase signature 119 133 2.0E-29 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AMK58_20910 ab078001669b70e0c034707ccbb0f231 304 PRINTS PR00102 Ornithine carbamoyltransferase signature 218 228 2.0E-29 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AMK58_20910 ab078001669b70e0c034707ccbb0f231 304 PRINTS PR00102 Ornithine carbamoyltransferase signature 279 290 2.0E-29 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AMK58_20910 ab078001669b70e0c034707ccbb0f231 304 PRINTS PR00102 Ornithine carbamoyltransferase signature 46 60 2.0E-29 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AMK58_20910 ab078001669b70e0c034707ccbb0f231 304 PRINTS PR00102 Ornithine carbamoyltransferase signature 79 92 2.0E-29 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AMK58_20910 ab078001669b70e0c034707ccbb0f231 304 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 4 301 75.886 T 11-10-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 AMK58_20910 ab078001669b70e0c034707ccbb0f231 304 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 48 67 8.2E-27 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMK58_20910 ab078001669b70e0c034707ccbb0f231 304 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 265 288 8.2E-27 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMK58_20910 ab078001669b70e0c034707ccbb0f231 304 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 130 141 8.2E-27 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMK58_20910 ab078001669b70e0c034707ccbb0f231 304 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 253 262 8.2E-27 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMK58_20910 ab078001669b70e0c034707ccbb0f231 304 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 48 55 - T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMK58_20910 ab078001669b70e0c034707ccbb0f231 304 Gene3D G3DSA:3.40.50.1370 133 287 3.9E-115 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AMK58_28600 142c4cfd80f1c19abba1893c24aefe53 235 SUPERFAMILY SSF46785 148 226 5.93E-9 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_28600 142c4cfd80f1c19abba1893c24aefe53 235 Gene3D G3DSA:2.60.120.10 3 140 5.7E-20 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_28600 142c4cfd80f1c19abba1893c24aefe53 235 SMART SM00100 15 130 3.6E-10 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_28600 142c4cfd80f1c19abba1893c24aefe53 235 Pfam PF00027 Cyclic nucleotide-binding domain 34 116 2.5E-9 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_28600 142c4cfd80f1c19abba1893c24aefe53 235 Gene3D G3DSA:1.10.10.10 141 233 5.5E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_28600 142c4cfd80f1c19abba1893c24aefe53 235 SUPERFAMILY SSF51206 7 134 2.88E-19 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like AMK58_28600 142c4cfd80f1c19abba1893c24aefe53 235 Pfam PF13545 Crp-like helix-turn-helix domain 150 224 4.4E-13 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMK58_10720 887942c2a816a858d97c7614282dcdf0 187 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 108 182 1.0E-22 T 11-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 AMK58_10720 887942c2a816a858d97c7614282dcdf0 187 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 146 162 - T 11-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 AMK58_10720 887942c2a816a858d97c7614282dcdf0 187 Hamap MF_00930 Transcription elongation factor GreB [greB]. 27 183 51.94 T 11-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 AMK58_10720 887942c2a816a858d97c7614282dcdf0 187 Gene3D G3DSA:1.10.287.180 28 102 3.4E-28 T 11-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 AMK58_10720 887942c2a816a858d97c7614282dcdf0 187 SUPERFAMILY SSF46557 29 103 3.79E-27 T 11-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 AMK58_10720 887942c2a816a858d97c7614282dcdf0 187 PIRSF PIRSF006092 27 183 1.1E-45 T 11-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 AMK58_10720 887942c2a816a858d97c7614282dcdf0 187 Hamap MF_00105 Transcription elongation factor GreA [greA]. 28 181 25.947 T 11-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 AMK58_10720 887942c2a816a858d97c7614282dcdf0 187 SUPERFAMILY SSF54534 107 182 3.92E-19 T 11-10-2018 AMK58_10720 887942c2a816a858d97c7614282dcdf0 187 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 43 74 - T 11-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 AMK58_10720 887942c2a816a858d97c7614282dcdf0 187 TIGRFAM TIGR01461 greB: transcription elongation factor GreB 29 183 1.8E-67 T 11-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 AMK58_10720 887942c2a816a858d97c7614282dcdf0 187 Pfam PF03449 Transcription elongation factor, N-terminal 30 100 2.8E-25 T 11-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 AMK58_10720 887942c2a816a858d97c7614282dcdf0 187 Gene3D G3DSA:3.10.50.30 105 184 1.1E-25 T 11-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 AMK58_09050 c2ea1b6770b62d8b925cb844e2737536 393 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 292 385 2.3E-17 T 11-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal AMK58_09050 c2ea1b6770b62d8b925cb844e2737536 393 SMART SM00833 292 386 1.4E-17 T 11-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal AMK58_09050 c2ea1b6770b62d8b925cb844e2737536 393 Gene3D G3DSA:3.30.1220.10 276 385 1.5E-23 T 11-10-2018 IPR036627 CobW-like, C-terminal domain superfamily AMK58_09050 c2ea1b6770b62d8b925cb844e2737536 393 Gene3D G3DSA:3.40.50.300 22 225 1.2E-62 T 11-10-2018 AMK58_09050 c2ea1b6770b62d8b925cb844e2737536 393 SUPERFAMILY SSF90002 292 386 5.1E-21 T 11-10-2018 AMK58_09050 c2ea1b6770b62d8b925cb844e2737536 393 SUPERFAMILY SSF52540 23 214 2.28E-35 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_09050 c2ea1b6770b62d8b925cb844e2737536 393 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 25 205 9.5E-46 T 11-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain AMK58_29125 f3459c1a44d0c9d665483841f9577ed7 330 SUPERFAMILY SSF52540 64 317 5.17E-54 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_29125 f3459c1a44d0c9d665483841f9577ed7 330 Gene3D G3DSA:3.40.50.300 62 328 5.3E-69 T 11-10-2018 AMK58_29125 f3459c1a44d0c9d665483841f9577ed7 330 Pfam PF13614 AAA domain 66 243 4.6E-52 T 11-10-2018 IPR025669 AAA domain AMK58_29125 f3459c1a44d0c9d665483841f9577ed7 330 Gene3D G3DSA:1.10.260.40 1 61 4.6E-5 T 11-10-2018 AMK58_01300 024ff320da8867a118f2e11fbd256918 600 SUPERFAMILY SSF54980 402 496 3.41E-24 T 11-10-2018 IPR035647 EF-G domain III/V-like AMK58_01300 024ff320da8867a118f2e11fbd256918 600 SUPERFAMILY SSF54980 296 373 1.94E-18 T 11-10-2018 IPR035647 EF-G domain III/V-like AMK58_01300 024ff320da8867a118f2e11fbd256918 600 Pfam PF06421 GTP-binding protein LepA C-terminus 490 596 8.6E-51 T 11-10-2018 IPR013842 GTP-binding protein LepA, C-terminal AMK58_01300 024ff320da8867a118f2e11fbd256918 600 Gene3D G3DSA:3.30.70.3380 371 481 1.2E-40 T 11-10-2018 AMK58_01300 024ff320da8867a118f2e11fbd256918 600 Pfam PF00009 Elongation factor Tu GTP binding domain 6 184 7.3E-53 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_01300 024ff320da8867a118f2e11fbd256918 600 Hamap MF_00071 Elongation factor 4 [lepA]. 1 600 304.752 T 11-10-2018 IPR006297 Elongation factor 4 GO:0005525 AMK58_01300 024ff320da8867a118f2e11fbd256918 600 Gene3D G3DSA:3.30.70.870 289 370 2.1E-34 T 11-10-2018 AMK58_01300 024ff320da8867a118f2e11fbd256918 600 Gene3D G3DSA:3.40.50.300 3 188 6.9E-73 T 11-10-2018 AMK58_01300 024ff320da8867a118f2e11fbd256918 600 Pfam PF00679 Elongation factor G C-terminus 402 487 1.0E-20 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like AMK58_01300 024ff320da8867a118f2e11fbd256918 600 PRINTS PR00315 GTP-binding elongation factor signature 52 60 1.0E-13 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_01300 024ff320da8867a118f2e11fbd256918 600 PRINTS PR00315 GTP-binding elongation factor signature 9 22 1.0E-13 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_01300 024ff320da8867a118f2e11fbd256918 600 PRINTS PR00315 GTP-binding elongation factor signature 93 104 1.0E-13 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_01300 024ff320da8867a118f2e11fbd256918 600 PRINTS PR00315 GTP-binding elongation factor signature 129 138 1.0E-13 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_01300 024ff320da8867a118f2e11fbd256918 600 PRINTS PR00315 GTP-binding elongation factor signature 77 87 1.0E-13 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_01300 024ff320da8867a118f2e11fbd256918 600 SUPERFAMILY SSF52540 1 222 7.05E-55 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_01300 024ff320da8867a118f2e11fbd256918 600 Gene3D G3DSA:3.30.70.2570 482 556 6.5E-36 T 11-10-2018 IPR038363 LepA, C-terminal domain superfamily AMK58_01300 024ff320da8867a118f2e11fbd256918 600 TIGRFAM TIGR01393 lepA: elongation factor 4 6 597 3.0E-293 T 11-10-2018 IPR006297 Elongation factor 4 GO:0005525 AMK58_01300 024ff320da8867a118f2e11fbd256918 600 Pfam PF03144 Elongation factor Tu domain 2 208 278 3.8E-8 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AMK58_01300 024ff320da8867a118f2e11fbd256918 600 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 179 3.3E-20 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMK58_01300 024ff320da8867a118f2e11fbd256918 600 Gene3D G3DSA:2.40.30.10 189 288 2.5E-30 T 11-10-2018 AMK58_01300 024ff320da8867a118f2e11fbd256918 600 SMART SM00838 401 492 0.0066 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like AMK58_01300 024ff320da8867a118f2e11fbd256918 600 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 45 60 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site AMK58_08305 0b5ae7a246b6bc71244d4e2d89253d93 195 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 191 1.7E-62 T 11-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMK58_08305 0b5ae7a246b6bc71244d4e2d89253d93 195 SUPERFAMILY SSF63380 92 191 1.45E-35 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AMK58_08305 0b5ae7a246b6bc71244d4e2d89253d93 195 Pfam PF00677 Lumazine binding domain 3 85 1.3E-22 T 11-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMK58_08305 0b5ae7a246b6bc71244d4e2d89253d93 195 Pfam PF00677 Lumazine binding domain 98 182 1.6E-27 T 11-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMK58_08305 0b5ae7a246b6bc71244d4e2d89253d93 195 Gene3D G3DSA:2.40.30.20 1 87 1.2E-26 T 11-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMK58_08305 0b5ae7a246b6bc71244d4e2d89253d93 195 PIRSF PIRSF000498 1 195 2.2E-75 T 11-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMK58_08305 0b5ae7a246b6bc71244d4e2d89253d93 195 Gene3D G3DSA:2.40.30.20 100 195 8.9E-39 T 11-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMK58_08305 0b5ae7a246b6bc71244d4e2d89253d93 195 SUPERFAMILY SSF63380 1 91 5.36E-24 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AMK58_24985 e24a640ca7c6ff2c9b1e05566e7aeaf2 523 Pfam PF00732 GMC oxidoreductase 20 283 9.8E-17 T 11-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 AMK58_24985 e24a640ca7c6ff2c9b1e05566e7aeaf2 523 Gene3D G3DSA:3.50.50.60 10 166 2.4E-14 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_24985 e24a640ca7c6ff2c9b1e05566e7aeaf2 523 SUPERFAMILY SSF54373 292 459 2.08E-15 T 11-10-2018 AMK58_24985 e24a640ca7c6ff2c9b1e05566e7aeaf2 523 Gene3D G3DSA:3.50.50.60 208 327 4.2E-7 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_24985 e24a640ca7c6ff2c9b1e05566e7aeaf2 523 Pfam PF05199 GMC oxidoreductase 391 509 3.1E-21 T 11-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 AMK58_24985 e24a640ca7c6ff2c9b1e05566e7aeaf2 523 Gene3D G3DSA:3.50.50.60 440 522 1.2E-13 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_24985 e24a640ca7c6ff2c9b1e05566e7aeaf2 523 SUPERFAMILY SSF51905 13 519 1.75E-58 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_22610 c970701cd04606190a432236f23a1213 189 Gene3D G3DSA:3.40.630.30 12 164 1.7E-14 T 11-10-2018 AMK58_22610 c970701cd04606190a432236f23a1213 189 SUPERFAMILY SSF55729 14 152 1.26E-16 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_22610 c970701cd04606190a432236f23a1213 189 Pfam PF13673 Acetyltransferase (GNAT) domain 43 151 1.8E-8 T 11-10-2018 IPR000182 GNAT domain AMK58_08720 e06cceac4bfc6d3648dcbc9511f76d2e 587 SMART SM00387 457 570 1.1E-34 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_08720 e06cceac4bfc6d3648dcbc9511f76d2e 587 Gene3D G3DSA:1.10.287.130 307 409 1.4E-29 T 11-10-2018 AMK58_08720 e06cceac4bfc6d3648dcbc9511f76d2e 587 SUPERFAMILY SSF55874 400 568 2.23E-44 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_08720 e06cceac4bfc6d3648dcbc9511f76d2e 587 Pfam PF00512 His Kinase A (phospho-acceptor) domain 343 411 9.8E-21 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_08720 e06cceac4bfc6d3648dcbc9511f76d2e 587 SMART SM00388 343 411 7.5E-25 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_08720 e06cceac4bfc6d3648dcbc9511f76d2e 587 PRINTS PR00344 Bacterial sensor protein C-terminal signature 554 567 8.1E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_08720 e06cceac4bfc6d3648dcbc9511f76d2e 587 PRINTS PR00344 Bacterial sensor protein C-terminal signature 530 548 8.1E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_08720 e06cceac4bfc6d3648dcbc9511f76d2e 587 PRINTS PR00344 Bacterial sensor protein C-terminal signature 495 509 8.1E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_08720 e06cceac4bfc6d3648dcbc9511f76d2e 587 SUPERFAMILY SSF47384 329 412 8.83E-23 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_08720 e06cceac4bfc6d3648dcbc9511f76d2e 587 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 458 568 1.8E-24 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_08720 e06cceac4bfc6d3648dcbc9511f76d2e 587 Gene3D G3DSA:3.30.565.10 410 569 1.0E-41 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_04910 d035d227c44285a35e8ee59d6ad36f95 370 Pfam PF00266 Aminotransferase class-V 4 353 4.0E-59 T 11-10-2018 IPR000192 Aminotransferase class V domain AMK58_04910 d035d227c44285a35e8ee59d6ad36f95 370 PIRSF PIRSF005572 1 367 9.2E-113 T 11-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 AMK58_04910 d035d227c44285a35e8ee59d6ad36f95 370 Gene3D G3DSA:3.40.640.10 60 223 8.6E-118 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_04910 d035d227c44285a35e8ee59d6ad36f95 370 Gene3D G3DSA:1.10.260.50 15 266 8.6E-118 T 11-10-2018 AMK58_04910 d035d227c44285a35e8ee59d6ad36f95 370 SUPERFAMILY SSF53383 3 356 1.84E-86 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_04910 d035d227c44285a35e8ee59d6ad36f95 370 Gene3D G3DSA:3.90.1150.10 4 355 8.6E-118 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_26895 e6c4228f3591777e3e73bab3b2fa7e5e 377 SUPERFAMILY SSF46626 55 164 6.94E-19 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_26895 e6c4228f3591777e3e73bab3b2fa7e5e 377 Gene3D G3DSA:1.10.760.10 58 165 4.2E-16 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_26895 e6c4228f3591777e3e73bab3b2fa7e5e 377 SUPERFAMILY SSF46626 276 362 2.83E-12 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_26895 e6c4228f3591777e3e73bab3b2fa7e5e 377 Gene3D G3DSA:1.10.760.10 273 364 1.2E-17 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_26895 e6c4228f3591777e3e73bab3b2fa7e5e 377 Gene3D G3DSA:1.10.760.10 189 266 1.7E-17 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_26895 e6c4228f3591777e3e73bab3b2fa7e5e 377 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 70 151 7.5E-13 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_26895 e6c4228f3591777e3e73bab3b2fa7e5e 377 SUPERFAMILY SSF46626 194 269 1.46E-14 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_23830 ed536aa494f2a46b85b44de7ffc355bf 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.1E-34 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_23830 ed536aa494f2a46b85b44de7ffc355bf 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 1.1E-34 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_23830 ed536aa494f2a46b85b44de7ffc355bf 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 1.1E-34 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_23830 ed536aa494f2a46b85b44de7ffc355bf 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 220 240 1.1E-34 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_23830 ed536aa494f2a46b85b44de7ffc355bf 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 1.1E-34 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_23830 ed536aa494f2a46b85b44de7ffc355bf 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 1.1E-34 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_23830 ed536aa494f2a46b85b44de7ffc355bf 261 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 188 0.0098 T 11-10-2018 AMK58_23830 ed536aa494f2a46b85b44de7ffc355bf 261 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 254 1.1E-59 T 11-10-2018 AMK58_23830 ed536aa494f2a46b85b44de7ffc355bf 261 SUPERFAMILY SSF51735 4 255 6.8E-76 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_23830 ed536aa494f2a46b85b44de7ffc355bf 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 8.3E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_23830 ed536aa494f2a46b85b44de7ffc355bf 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 8.3E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_23830 ed536aa494f2a46b85b44de7ffc355bf 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 8.3E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_23830 ed536aa494f2a46b85b44de7ffc355bf 261 Gene3D G3DSA:3.40.50.720 6 259 2.8E-81 T 11-10-2018 AMK58_01405 08591ca64f415432ac341d653231b809 482 SUPERFAMILY SSF48452 230 456 1.39E-17 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_01405 08591ca64f415432ac341d653231b809 482 Pfam PF13432 Tetratricopeptide repeat 224 265 5.8E-4 T 11-10-2018 AMK58_01405 08591ca64f415432ac341d653231b809 482 Pfam PF13432 Tetratricopeptide repeat 413 466 5.9E-5 T 11-10-2018 AMK58_01405 08591ca64f415432ac341d653231b809 482 Pfam PF13432 Tetratricopeptide repeat 164 199 0.012 T 11-10-2018 AMK58_01405 08591ca64f415432ac341d653231b809 482 TIGRFAM TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI 2 131 1.2E-28 T 11-10-2018 IPR017560 Cytochrome c-type biogenesis protein CcmI AMK58_01405 08591ca64f415432ac341d653231b809 482 SMART SM00028 242 275 250.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_01405 08591ca64f415432ac341d653231b809 482 SMART SM00028 355 388 7.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_01405 08591ca64f415432ac341d653231b809 482 SMART SM00028 171 204 0.0083 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_01405 08591ca64f415432ac341d653231b809 482 Gene3D G3DSA:1.25.40.10 339 478 1.1E-20 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_01405 08591ca64f415432ac341d653231b809 482 Gene3D G3DSA:1.25.40.10 155 300 2.7E-24 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_01405 08591ca64f415432ac341d653231b809 482 SUPERFAMILY SSF48452 155 265 1.17E-13 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_27315 613fffc3cb680b3144dbf7cdd3718f1a 567 Pfam PF13193 AMP-binding enzyme C-terminal domain 476 550 7.2E-18 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMK58_27315 613fffc3cb680b3144dbf7cdd3718f1a 567 Gene3D G3DSA:3.40.50.12780 26 461 2.4E-121 T 11-10-2018 AMK58_27315 613fffc3cb680b3144dbf7cdd3718f1a 567 SUPERFAMILY SSF56801 17 561 1.57E-152 T 11-10-2018 AMK58_27315 613fffc3cb680b3144dbf7cdd3718f1a 567 Gene3D G3DSA:3.30.300.30 462 563 2.8E-26 T 11-10-2018 AMK58_27315 613fffc3cb680b3144dbf7cdd3718f1a 567 Pfam PF00501 AMP-binding enzyme 37 465 1.6E-109 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMK58_27315 613fffc3cb680b3144dbf7cdd3718f1a 567 ProSitePatterns PS00455 Putative AMP-binding domain signature. 217 228 - T 11-10-2018 IPR020845 AMP-binding, conserved site AMK58_21305 2fa46a9ee36e26f9dda3839dc8990daa 160 TIGRFAM TIGR03164 UHCUDC: OHCU decarboxylase 1 158 3.8E-69 T 11-10-2018 IPR017580 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 1 GO:0019428 KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 AMK58_21305 2fa46a9ee36e26f9dda3839dc8990daa 160 Gene3D G3DSA:1.10.3330.10 1 160 2.1E-65 T 11-10-2018 IPR036778 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase superfamily KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 AMK58_21305 2fa46a9ee36e26f9dda3839dc8990daa 160 SUPERFAMILY SSF158694 1 159 6.8E-55 T 11-10-2018 IPR036778 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase superfamily KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 AMK58_21305 2fa46a9ee36e26f9dda3839dc8990daa 160 Pfam PF09349 OHCU decarboxylase 1 156 4.0E-46 T 11-10-2018 IPR018020 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 AMK58_26995 b38c7517055121e03dc4eb0f683f0fca 778 Pfam PF00672 HAMP domain 440 487 1.7E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_26995 b38c7517055121e03dc4eb0f683f0fca 778 SUPERFAMILY SSF55874 609 770 3.67E-31 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_26995 b38c7517055121e03dc4eb0f683f0fca 778 Gene3D G3DSA:1.20.1480.50 404 497 1.8E-10 T 11-10-2018 AMK58_26995 b38c7517055121e03dc4eb0f683f0fca 778 SUPERFAMILY SSF47384 516 574 2.55E-6 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_26995 b38c7517055121e03dc4eb0f683f0fca 778 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 650 770 1.6E-18 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_26995 b38c7517055121e03dc4eb0f683f0fca 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 717 727 3.4E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_26995 b38c7517055121e03dc4eb0f683f0fca 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 699 713 3.4E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_26995 b38c7517055121e03dc4eb0f683f0fca 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 756 769 3.4E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_26995 b38c7517055121e03dc4eb0f683f0fca 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 730 748 3.4E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_26995 b38c7517055121e03dc4eb0f683f0fca 778 SMART SM00387 648 772 6.1E-28 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_26995 b38c7517055121e03dc4eb0f683f0fca 778 SUPERFAMILY SSF158472 440 487 7.45E-8 T 11-10-2018 AMK58_26995 b38c7517055121e03dc4eb0f683f0fca 778 Gene3D G3DSA:3.30.565.10 607 775 6.9E-32 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_26995 b38c7517055121e03dc4eb0f683f0fca 778 Gene3D G3DSA:1.10.287.130 498 600 9.5E-20 T 11-10-2018 AMK58_26995 b38c7517055121e03dc4eb0f683f0fca 778 SMART SM00304 438 491 9.9E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_09840 294490ccc95104020bcf7d890a090aa2 153 Pfam PF09424 Yqey-like protein 4 150 1.7E-47 T 11-10-2018 IPR019004 Uncharacterised protein YqeY/AIM41 AMK58_09840 294490ccc95104020bcf7d890a090aa2 153 SUPERFAMILY SSF89095 2 151 1.31E-38 T 11-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 AMK58_09840 294490ccc95104020bcf7d890a090aa2 153 Gene3D G3DSA:1.10.10.410 95 151 2.9E-18 T 11-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal AMK58_09840 294490ccc95104020bcf7d890a090aa2 153 Gene3D G3DSA:1.10.1510.10 1 94 7.7E-24 T 11-10-2018 AMK58_11595 3ee11bb7a593dc7f3ae137a28856328d 388 Pfam PF13458 Periplasmic binding protein 23 360 4.3E-76 T 11-10-2018 IPR028081 Leucine-binding protein domain AMK58_11595 3ee11bb7a593dc7f3ae137a28856328d 388 Gene3D G3DSA:3.40.50.2300 141 356 2.6E-101 T 11-10-2018 AMK58_11595 3ee11bb7a593dc7f3ae137a28856328d 388 Gene3D G3DSA:3.40.50.2300 25 350 2.6E-101 T 11-10-2018 AMK58_11595 3ee11bb7a593dc7f3ae137a28856328d 388 SUPERFAMILY SSF53822 23 386 5.76E-88 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMK58_21650 aa910a2df3c19efbe9398644b30f0830 127 Gene3D G3DSA:2.40.160.50 1 125 2.1E-13 T 11-10-2018 AMK58_24725 f59b795163c5d5a8c0f0a16f5366c004 220 Gene3D G3DSA:1.10.3720.10 1 217 1.9E-60 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_24725 f59b795163c5d5a8c0f0a16f5366c004 220 SUPERFAMILY SSF161098 13 201 1.3E-48 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_24725 f59b795163c5d5a8c0f0a16f5366c004 220 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 110 6.7E-30 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMK58_24725 f59b795163c5d5a8c0f0a16f5366c004 220 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 35 216 1.9E-24 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_04235 66abbaf417db3a055b993d3c27ab13cc 213 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 8 178 3.3E-70 T 11-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 AMK58_04235 66abbaf417db3a055b993d3c27ab13cc 213 Gene3D G3DSA:3.40.630.70 35 206 1.4E-62 T 11-10-2018 AMK58_04235 66abbaf417db3a055b993d3c27ab13cc 213 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 10 193 1.9E-61 T 11-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 AMK58_04235 66abbaf417db3a055b993d3c27ab13cc 213 SUPERFAMILY SSF55729 4 198 9.0E-79 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_04235 66abbaf417db3a055b993d3c27ab13cc 213 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 213 84.294 T 11-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 AMK58_26850 b1f61f17979173ccaac11a1b74aae1f3 968 Gene3D G3DSA:3.30.70.370 703 964 3.9E-104 T 11-10-2018 AMK58_26850 b1f61f17979173ccaac11a1b74aae1f3 968 Pfam PF00476 DNA polymerase family A 589 966 2.4E-142 T 11-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMK58_26850 b1f61f17979173ccaac11a1b74aae1f3 968 Pfam PF01612 3'-5' exonuclease 357 555 2.9E-33 T 11-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AMK58_26850 b1f61f17979173ccaac11a1b74aae1f3 968 SMART SM00482 725 932 4.1E-104 T 11-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMK58_26850 b1f61f17979173ccaac11a1b74aae1f3 968 Gene3D G3DSA:1.10.150.20 191 264 6.0E-93 T 11-10-2018 AMK58_26850 b1f61f17979173ccaac11a1b74aae1f3 968 SMART SM00279 190 225 1.9E-12 T 11-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 AMK58_26850 b1f61f17979173ccaac11a1b74aae1f3 968 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 26 187 4.6E-56 T 11-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 AMK58_26850 b1f61f17979173ccaac11a1b74aae1f3 968 SMART SM00475 24 279 3.3E-117 T 11-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 AMK58_26850 b1f61f17979173ccaac11a1b74aae1f3 968 Gene3D G3DSA:1.20.1060.10 581 697 1.6E-37 T 11-10-2018 AMK58_26850 b1f61f17979173ccaac11a1b74aae1f3 968 Gene3D G3DSA:1.10.150.20 748 891 3.9E-104 T 11-10-2018 AMK58_26850 b1f61f17979173ccaac11a1b74aae1f3 968 SUPERFAMILY SSF53098 354 555 8.68E-47 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMK58_26850 b1f61f17979173ccaac11a1b74aae1f3 968 ProSitePatterns PS00447 DNA polymerase family A signature. 793 812 - T 11-10-2018 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMK58_26850 b1f61f17979173ccaac11a1b74aae1f3 968 TIGRFAM TIGR00593 pola: DNA polymerase I 26 968 6.2E-279 T 11-10-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMK58_26850 b1f61f17979173ccaac11a1b74aae1f3 968 SUPERFAMILY SSF88723 25 187 7.85E-53 T 11-10-2018 IPR029060 PIN-like domain superfamily AMK58_26850 b1f61f17979173ccaac11a1b74aae1f3 968 Gene3D G3DSA:3.30.420.10 354 579 5.0E-64 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMK58_26850 b1f61f17979173ccaac11a1b74aae1f3 968 PRINTS PR00868 DNA-polymerase family A (pol I) signature 694 716 3.5E-70 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMK58_26850 b1f61f17979173ccaac11a1b74aae1f3 968 PRINTS PR00868 DNA-polymerase family A (pol I) signature 915 928 3.5E-70 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMK58_26850 b1f61f17979173ccaac11a1b74aae1f3 968 PRINTS PR00868 DNA-polymerase family A (pol I) signature 884 900 3.5E-70 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMK58_26850 b1f61f17979173ccaac11a1b74aae1f3 968 PRINTS PR00868 DNA-polymerase family A (pol I) signature 793 818 3.5E-70 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMK58_26850 b1f61f17979173ccaac11a1b74aae1f3 968 PRINTS PR00868 DNA-polymerase family A (pol I) signature 739 762 3.5E-70 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMK58_26850 b1f61f17979173ccaac11a1b74aae1f3 968 PRINTS PR00868 DNA-polymerase family A (pol I) signature 830 841 3.5E-70 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMK58_26850 b1f61f17979173ccaac11a1b74aae1f3 968 PRINTS PR00868 DNA-polymerase family A (pol I) signature 769 782 3.5E-70 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMK58_26850 b1f61f17979173ccaac11a1b74aae1f3 968 PRINTS PR00868 DNA-polymerase family A (pol I) signature 852 863 3.5E-70 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMK58_26850 b1f61f17979173ccaac11a1b74aae1f3 968 PRINTS PR00868 DNA-polymerase family A (pol I) signature 717 732 3.5E-70 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMK58_26850 b1f61f17979173ccaac11a1b74aae1f3 968 SMART SM00474 357 556 8.7E-33 T 11-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AMK58_26850 b1f61f17979173ccaac11a1b74aae1f3 968 Gene3D G3DSA:3.40.50.1010 26 295 6.0E-93 T 11-10-2018 AMK58_26850 b1f61f17979173ccaac11a1b74aae1f3 968 SUPERFAMILY SSF47807 188 303 3.59E-29 T 11-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily AMK58_26850 b1f61f17979173ccaac11a1b74aae1f3 968 SUPERFAMILY SSF56672 560 968 8.12E-146 T 11-10-2018 AMK58_26850 b1f61f17979173ccaac11a1b74aae1f3 968 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 188 283 1.6E-29 T 11-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 AMK58_04350 a6c9c320ba2b1987e05fdb1dd04695b0 314 SMART SM00320 12 51 3.4E-4 T 11-10-2018 IPR001680 WD40 repeat GO:0005515 AMK58_04350 a6c9c320ba2b1987e05fdb1dd04695b0 314 SMART SM00320 138 177 2.8E-9 T 11-10-2018 IPR001680 WD40 repeat GO:0005515 AMK58_04350 a6c9c320ba2b1987e05fdb1dd04695b0 314 SMART SM00320 265 304 2.2E-8 T 11-10-2018 IPR001680 WD40 repeat GO:0005515 AMK58_04350 a6c9c320ba2b1987e05fdb1dd04695b0 314 SMART SM00320 180 219 5.4E-11 T 11-10-2018 IPR001680 WD40 repeat GO:0005515 AMK58_04350 a6c9c320ba2b1987e05fdb1dd04695b0 314 SMART SM00320 54 93 4.7E-8 T 11-10-2018 IPR001680 WD40 repeat GO:0005515 AMK58_04350 a6c9c320ba2b1987e05fdb1dd04695b0 314 SMART SM00320 222 262 6.4E-10 T 11-10-2018 IPR001680 WD40 repeat GO:0005515 AMK58_04350 a6c9c320ba2b1987e05fdb1dd04695b0 314 SMART SM00320 96 135 2.5E-8 T 11-10-2018 IPR001680 WD40 repeat GO:0005515 AMK58_04350 a6c9c320ba2b1987e05fdb1dd04695b0 314 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 206 220 - T 11-10-2018 IPR019775 WD40 repeat, conserved site AMK58_04350 a6c9c320ba2b1987e05fdb1dd04695b0 314 Gene3D G3DSA:2.130.10.10 8 92 8.0E-24 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 AMK58_04350 a6c9c320ba2b1987e05fdb1dd04695b0 314 SUPERFAMILY SSF50978 19 304 7.69E-97 T 11-10-2018 IPR036322 WD40-repeat-containing domain superfamily GO:0005515 AMK58_04350 a6c9c320ba2b1987e05fdb1dd04695b0 314 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 249 263 - T 11-10-2018 IPR019775 WD40 repeat, conserved site AMK58_04350 a6c9c320ba2b1987e05fdb1dd04695b0 314 Gene3D G3DSA:2.130.10.10 93 219 2.8E-51 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 AMK58_04350 a6c9c320ba2b1987e05fdb1dd04695b0 314 Pfam PF00400 WD domain, G-beta repeat 56 93 6.1E-5 T 11-10-2018 IPR001680 WD40 repeat GO:0005515 AMK58_04350 a6c9c320ba2b1987e05fdb1dd04695b0 314 Pfam PF00400 WD domain, G-beta repeat 97 135 3.0E-6 T 11-10-2018 IPR001680 WD40 repeat GO:0005515 AMK58_04350 a6c9c320ba2b1987e05fdb1dd04695b0 314 Pfam PF00400 WD domain, G-beta repeat 182 219 8.9E-8 T 11-10-2018 IPR001680 WD40 repeat GO:0005515 AMK58_04350 a6c9c320ba2b1987e05fdb1dd04695b0 314 Pfam PF00400 WD domain, G-beta repeat 267 304 3.0E-5 T 11-10-2018 IPR001680 WD40 repeat GO:0005515 AMK58_04350 a6c9c320ba2b1987e05fdb1dd04695b0 314 Pfam PF00400 WD domain, G-beta repeat 19 51 5.0E-5 T 11-10-2018 IPR001680 WD40 repeat GO:0005515 AMK58_04350 a6c9c320ba2b1987e05fdb1dd04695b0 314 Pfam PF00400 WD domain, G-beta repeat 224 262 1.3E-9 T 11-10-2018 IPR001680 WD40 repeat GO:0005515 AMK58_04350 a6c9c320ba2b1987e05fdb1dd04695b0 314 Pfam PF00400 WD domain, G-beta repeat 141 177 9.5E-7 T 11-10-2018 IPR001680 WD40 repeat GO:0005515 AMK58_04350 a6c9c320ba2b1987e05fdb1dd04695b0 314 Gene3D G3DSA:2.130.10.10 220 311 2.8E-30 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 AMK58_04350 a6c9c320ba2b1987e05fdb1dd04695b0 314 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 80 94 - T 11-10-2018 IPR019775 WD40 repeat, conserved site AMK58_04350 a6c9c320ba2b1987e05fdb1dd04695b0 314 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 164 178 - T 11-10-2018 IPR019775 WD40 repeat, conserved site AMK58_04350 a6c9c320ba2b1987e05fdb1dd04695b0 314 PRINTS PR00320 G protein beta WD-40 repeat signature 249 263 4.1E-7 T 11-10-2018 IPR020472 G-protein beta WD-40 repeat AMK58_04350 a6c9c320ba2b1987e05fdb1dd04695b0 314 PRINTS PR00320 G protein beta WD-40 repeat signature 206 220 4.1E-7 T 11-10-2018 IPR020472 G-protein beta WD-40 repeat AMK58_04350 a6c9c320ba2b1987e05fdb1dd04695b0 314 PRINTS PR00320 G protein beta WD-40 repeat signature 164 178 4.1E-7 T 11-10-2018 IPR020472 G-protein beta WD-40 repeat AMK58_26220 4b99c855aa6cc6e54b35744eca0b991e 290 SUPERFAMILY SSF53850 88 290 3.44E-45 T 11-10-2018 AMK58_26220 4b99c855aa6cc6e54b35744eca0b991e 290 Pfam PF03466 LysR substrate binding domain 87 289 6.5E-47 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_26220 4b99c855aa6cc6e54b35744eca0b991e 290 Gene3D G3DSA:1.10.10.10 1 89 6.2E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_26220 4b99c855aa6cc6e54b35744eca0b991e 290 SUPERFAMILY SSF46785 1 111 2.54E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_26220 4b99c855aa6cc6e54b35744eca0b991e 290 Gene3D G3DSA:3.40.190.290 90 288 1.9E-63 T 11-10-2018 AMK58_26220 4b99c855aa6cc6e54b35744eca0b991e 290 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 62 1.3E-14 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_04815 d4db710bed9e84287506edfdfec41785 448 Pfam PF02754 Cysteine-rich domain 317 400 4.9E-11 T 11-10-2018 IPR004017 Cysteine-rich domain AMK58_04815 d4db710bed9e84287506edfdfec41785 448 Pfam PF02754 Cysteine-rich domain 185 270 1.2E-12 T 11-10-2018 IPR004017 Cysteine-rich domain AMK58_04815 d4db710bed9e84287506edfdfec41785 448 Gene3D G3DSA:1.10.1060.10 5 111 1.8E-8 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AMK58_04815 d4db710bed9e84287506edfdfec41785 448 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 76 87 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMK58_04815 d4db710bed9e84287506edfdfec41785 448 Pfam PF12838 4Fe-4S dicluster domain 24 90 1.3E-11 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMK58_04815 d4db710bed9e84287506edfdfec41785 448 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 25 36 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMK58_04815 d4db710bed9e84287506edfdfec41785 448 PIRSF PIRSF000139 5 427 2.1E-127 T 11-10-2018 AMK58_04815 d4db710bed9e84287506edfdfec41785 448 SUPERFAMILY SSF54862 22 118 1.55E-20 T 11-10-2018 AMK58_14185 020feff8876bf3ed583f805fd63e697f 251 SUPERFAMILY SSF52266 51 238 1.98E-38 T 11-10-2018 AMK58_14185 020feff8876bf3ed583f805fd63e697f 251 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 56 228 2.9E-19 T 11-10-2018 IPR013830 SGNH hydrolase-type esterase domain AMK58_14185 020feff8876bf3ed583f805fd63e697f 251 Gene3D G3DSA:3.40.50.1110 49 239 6.7E-37 T 11-10-2018 IPR036514 SGNH hydrolase superfamily AMK58_03850 9d2bb8f1b09d42bf259809201518f4b2 272 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 5 236 37.221 T 11-10-2018 IPR017689 Outer membrane protein assembly factor BamD AMK58_03850 9d2bb8f1b09d42bf259809201518f4b2 272 Gene3D G3DSA:1.25.40.10 34 247 1.5E-62 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_03850 9d2bb8f1b09d42bf259809201518f4b2 272 SUPERFAMILY SSF48452 53 228 6.11E-14 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_03850 9d2bb8f1b09d42bf259809201518f4b2 272 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 8 242 6.7E-90 T 11-10-2018 IPR017689 Outer membrane protein assembly factor BamD AMK58_03850 9d2bb8f1b09d42bf259809201518f4b2 272 Pfam PF13525 Outer membrane lipoprotein 34 229 6.0E-57 T 11-10-2018 IPR039565 Outer membrane lipoprotein BamD-like AMK58_28820 e058c9fd23f7279579c2c9fc3271f60a 557 Gene3D G3DSA:3.40.50.2000 9 415 2.2E-51 T 11-10-2018 AMK58_28820 e058c9fd23f7279579c2c9fc3271f60a 557 Pfam PF13439 Glycosyltransferase Family 4 13 218 5.8E-13 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AMK58_28820 e058c9fd23f7279579c2c9fc3271f60a 557 Pfam PF13692 Glycosyl transferases group 1 241 382 3.9E-18 T 11-10-2018 AMK58_28820 e058c9fd23f7279579c2c9fc3271f60a 557 Gene3D G3DSA:3.40.50.2000 215 398 2.2E-51 T 11-10-2018 AMK58_28820 e058c9fd23f7279579c2c9fc3271f60a 557 SUPERFAMILY SSF53756 3 420 4.83E-60 T 11-10-2018 AMK58_22130 ddb7ac6ae6036e344914b96015bcbfd1 271 SUPERFAMILY SSF161098 16 261 3.74E-45 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_22130 ddb7ac6ae6036e344914b96015bcbfd1 271 Gene3D G3DSA:1.10.3720.10 13 269 8.2E-47 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_22130 ddb7ac6ae6036e344914b96015bcbfd1 271 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 88 258 7.4E-13 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_11365 79532e96bcc4dea5fc2496647d092907 258 SMART SM00852 13 174 5.0E-30 T 11-10-2018 IPR001453 MoaB/Mog domain AMK58_11365 79532e96bcc4dea5fc2496647d092907 258 Gene3D G3DSA:3.40.980.10 10 173 8.9E-52 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily AMK58_11365 79532e96bcc4dea5fc2496647d092907 258 SUPERFAMILY SSF53218 9 197 1.14E-38 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily AMK58_11365 79532e96bcc4dea5fc2496647d092907 258 Pfam PF00994 Probable molybdopterin binding domain 13 172 2.9E-33 T 11-10-2018 IPR001453 MoaB/Mog domain AMK58_25010 485af70c55f7c9b7e35e19b961b10d5d 994 Pfam PF08448 PAS fold 362 476 5.6E-13 T 11-10-2018 IPR013656 PAS fold-4 AMK58_25010 485af70c55f7c9b7e35e19b961b10d5d 994 Pfam PF08448 PAS fold 64 171 9.9E-8 T 11-10-2018 IPR013656 PAS fold-4 AMK58_25010 485af70c55f7c9b7e35e19b961b10d5d 994 Gene3D G3DSA:3.30.450.20 502 624 1.3E-23 T 11-10-2018 AMK58_25010 485af70c55f7c9b7e35e19b961b10d5d 994 SMART SM00387 734 853 3.8E-25 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_25010 485af70c55f7c9b7e35e19b961b10d5d 994 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 502 613 9.5E-18 T 11-10-2018 IPR000014 PAS domain AMK58_25010 485af70c55f7c9b7e35e19b961b10d5d 994 Pfam PF01590 GAF domain 219 333 1.6E-11 T 11-10-2018 IPR003018 GAF domain GO:0005515 AMK58_25010 485af70c55f7c9b7e35e19b961b10d5d 994 SUPERFAMILY SSF47384 619 691 9.02E-7 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_25010 485af70c55f7c9b7e35e19b961b10d5d 994 Pfam PF08447 PAS fold 523 591 3.9E-14 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 AMK58_25010 485af70c55f7c9b7e35e19b961b10d5d 994 SMART SM00086 132 171 130.0 T 11-10-2018 IPR001610 PAC motif AMK58_25010 485af70c55f7c9b7e35e19b961b10d5d 994 SMART SM00086 570 606 0.0015 T 11-10-2018 IPR001610 PAC motif AMK58_25010 485af70c55f7c9b7e35e19b961b10d5d 994 SMART SM00086 430 475 63.0 T 11-10-2018 IPR001610 PAC motif AMK58_25010 485af70c55f7c9b7e35e19b961b10d5d 994 SMART SM00448 877 984 9.3E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_25010 485af70c55f7c9b7e35e19b961b10d5d 994 Gene3D G3DSA:1.10.287.130 625 691 1.3E-15 T 11-10-2018 AMK58_25010 485af70c55f7c9b7e35e19b961b10d5d 994 SUPERFAMILY SSF55785 506 609 2.37E-23 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_25010 485af70c55f7c9b7e35e19b961b10d5d 994 Gene3D G3DSA:3.30.450.40 177 339 1.6E-14 T 11-10-2018 IPR029016 GAF-like domain superfamily AMK58_25010 485af70c55f7c9b7e35e19b961b10d5d 994 SMART SM00091 498 564 5.2E-8 T 11-10-2018 IPR000014 PAS domain AMK58_25010 485af70c55f7c9b7e35e19b961b10d5d 994 SMART SM00091 55 120 260.0 T 11-10-2018 IPR000014 PAS domain AMK58_25010 485af70c55f7c9b7e35e19b961b10d5d 994 SMART SM00091 356 421 0.16 T 11-10-2018 IPR000014 PAS domain AMK58_25010 485af70c55f7c9b7e35e19b961b10d5d 994 SUPERFAMILY SSF55874 683 849 9.56E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_25010 485af70c55f7c9b7e35e19b961b10d5d 994 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 735 849 4.3E-16 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_25010 485af70c55f7c9b7e35e19b961b10d5d 994 Gene3D G3DSA:3.30.450.20 52 176 2.0E-18 T 11-10-2018 AMK58_25010 485af70c55f7c9b7e35e19b961b10d5d 994 Gene3D G3DSA:3.30.450.20 340 487 3.5E-37 T 11-10-2018 AMK58_25010 485af70c55f7c9b7e35e19b961b10d5d 994 PRINTS PR00344 Bacterial sensor protein C-terminal signature 800 810 1.6E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_25010 485af70c55f7c9b7e35e19b961b10d5d 994 PRINTS PR00344 Bacterial sensor protein C-terminal signature 837 850 1.6E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_25010 485af70c55f7c9b7e35e19b961b10d5d 994 PRINTS PR00344 Bacterial sensor protein C-terminal signature 813 831 1.6E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_25010 485af70c55f7c9b7e35e19b961b10d5d 994 PRINTS PR00344 Bacterial sensor protein C-terminal signature 782 796 1.6E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_25010 485af70c55f7c9b7e35e19b961b10d5d 994 SUPERFAMILY SSF55785 344 473 7.5E-11 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_25010 485af70c55f7c9b7e35e19b961b10d5d 994 SUPERFAMILY SSF55785 64 163 4.19E-7 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_25010 485af70c55f7c9b7e35e19b961b10d5d 994 SMART SM00388 628 693 0.0099 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_25010 485af70c55f7c9b7e35e19b961b10d5d 994 Gene3D G3DSA:3.30.565.10 696 854 1.2E-36 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_25010 485af70c55f7c9b7e35e19b961b10d5d 994 SUPERFAMILY SSF55781 200 339 6.76E-21 T 11-10-2018 AMK58_25010 485af70c55f7c9b7e35e19b961b10d5d 994 Gene3D G3DSA:3.40.50.2300 874 993 1.3E-27 T 11-10-2018 AMK58_25010 485af70c55f7c9b7e35e19b961b10d5d 994 SMART SM00065 190 345 2.5E-15 T 11-10-2018 IPR003018 GAF domain GO:0005515 AMK58_25010 485af70c55f7c9b7e35e19b961b10d5d 994 Pfam PF00072 Response regulator receiver domain 879 984 6.8E-18 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_25010 485af70c55f7c9b7e35e19b961b10d5d 994 SUPERFAMILY SSF52172 877 988 7.4E-29 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_09715 c7c87d3e4a3a5ba654caa1f854bae4f8 513 PRINTS PR01036 Tetracycline resistance protein TetB signature 308 332 1.9E-10 T 11-10-2018 AMK58_09715 c7c87d3e4a3a5ba654caa1f854bae4f8 513 PRINTS PR01036 Tetracycline resistance protein TetB signature 408 427 1.9E-10 T 11-10-2018 AMK58_09715 c7c87d3e4a3a5ba654caa1f854bae4f8 513 PRINTS PR01036 Tetracycline resistance protein TetB signature 112 132 1.9E-10 T 11-10-2018 AMK58_09715 c7c87d3e4a3a5ba654caa1f854bae4f8 513 PRINTS PR01036 Tetracycline resistance protein TetB signature 142 166 1.9E-10 T 11-10-2018 AMK58_09715 c7c87d3e4a3a5ba654caa1f854bae4f8 513 PRINTS PR01036 Tetracycline resistance protein TetB signature 22 46 1.9E-10 T 11-10-2018 AMK58_09715 c7c87d3e4a3a5ba654caa1f854bae4f8 513 SUPERFAMILY SSF103473 11 496 2.88E-69 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_09715 c7c87d3e4a3a5ba654caa1f854bae4f8 513 Gene3D G3DSA:1.20.1720.10 22 230 9.2E-56 T 11-10-2018 AMK58_09715 c7c87d3e4a3a5ba654caa1f854bae4f8 513 Pfam PF07690 Major Facilitator Superfamily 23 417 2.5E-49 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMK58_09715 c7c87d3e4a3a5ba654caa1f854bae4f8 513 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 18 430 5.7E-73 T 11-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 AMK58_16690 563cce668bdd5eeaef1bb62671b6fe5e 194 Hamap MF_00146 dCTP deaminase [dcd]. 1 189 33.77 T 11-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 AMK58_16690 563cce668bdd5eeaef1bb62671b6fe5e 194 SUPERFAMILY SSF51283 1 189 1.11E-51 T 11-10-2018 IPR036157 dUTPase-like superfamily AMK58_16690 563cce668bdd5eeaef1bb62671b6fe5e 194 Gene3D G3DSA:2.70.40.10 1 193 5.4E-53 T 11-10-2018 IPR036157 dUTPase-like superfamily AMK58_16690 563cce668bdd5eeaef1bb62671b6fe5e 194 Pfam PF00692 dUTPase 75 177 5.9E-10 T 11-10-2018 IPR029054 dUTPase-like AMK58_16690 563cce668bdd5eeaef1bb62671b6fe5e 194 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 3 189 4.8E-59 T 11-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 AMK58_10710 01688c04d5a703852b28c24ed25d649f 432 Gene3D G3DSA:3.40.630.40 201 430 2.2E-70 T 11-10-2018 AMK58_10710 01688c04d5a703852b28c24ed25d649f 432 Gene3D G3DSA:2.60.40.3500 35 147 1.6E-16 T 11-10-2018 AMK58_10710 01688c04d5a703852b28c24ed25d649f 432 Pfam PF11741 AMIN domain 51 124 9.0E-7 T 11-10-2018 IPR021731 AMIN domain AMK58_10710 01688c04d5a703852b28c24ed25d649f 432 SUPERFAMILY SSF53187 203 424 2.67E-47 T 11-10-2018 AMK58_10710 01688c04d5a703852b28c24ed25d649f 432 SMART SM00646 265 420 1.3E-39 T 11-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 AMK58_10710 01688c04d5a703852b28c24ed25d649f 432 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 205 420 1.3E-44 T 11-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 AMK58_16760 d8634f6913405bfbd431e2bb41cff206 298 SUPERFAMILY SSF52172 1 132 3.13E-28 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_16760 d8634f6913405bfbd431e2bb41cff206 298 SMART SM00448 1 114 6.4E-15 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_16760 d8634f6913405bfbd431e2bb41cff206 298 Gene3D G3DSA:3.40.50.2300 1 122 8.7E-24 T 11-10-2018 AMK58_16760 d8634f6913405bfbd431e2bb41cff206 298 Gene3D G3DSA:3.30.70.270 123 295 2.9E-59 T 11-10-2018 AMK58_16760 d8634f6913405bfbd431e2bb41cff206 298 Pfam PF00072 Response regulator receiver domain 3 114 2.8E-14 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_16760 d8634f6913405bfbd431e2bb41cff206 298 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 127 294 5.8E-53 T 11-10-2018 IPR000160 GGDEF domain AMK58_16760 d8634f6913405bfbd431e2bb41cff206 298 SUPERFAMILY SSF55073 136 293 2.35E-47 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_16760 d8634f6913405bfbd431e2bb41cff206 298 Pfam PF00990 Diguanylate cyclase, GGDEF domain 131 291 3.9E-45 T 11-10-2018 IPR000160 GGDEF domain AMK58_16760 d8634f6913405bfbd431e2bb41cff206 298 SMART SM00267 120 295 1.2E-57 T 11-10-2018 IPR000160 GGDEF domain AMK58_01145 0e138b5d3e3f15162f518c8b68a1d670 232 Gene3D G3DSA:1.20.1440.100 48 122 6.8E-35 T 11-10-2018 AMK58_01145 0e138b5d3e3f15162f518c8b68a1d670 232 Gene3D G3DSA:3.40.50.1000 36 230 6.8E-35 T 11-10-2018 IPR023214 HAD superfamily AMK58_01145 0e138b5d3e3f15162f518c8b68a1d670 232 Pfam PF12710 haloacid dehalogenase-like hydrolase 37 220 7.6E-30 T 11-10-2018 AMK58_01145 0e138b5d3e3f15162f518c8b68a1d670 232 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 36 222 9.6E-20 T 11-10-2018 AMK58_01145 0e138b5d3e3f15162f518c8b68a1d670 232 SUPERFAMILY SSF56784 36 226 9.63E-21 T 11-10-2018 IPR036412 HAD-like superfamily AMK58_01145 0e138b5d3e3f15162f518c8b68a1d670 232 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 37 231 3.7E-32 T 11-10-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like AMK58_20375 fc634f8c7719f65c044664adf8915540 827 Pfam PF13844 Glycosyl transferase family 41 624 817 1.4E-47 T 11-10-2018 IPR029489 O-GlcNAc transferase, C-terminal KEGG: 00514+2.4.1.255|MetaCyc: PWY-7437|Reactome: R-HSA-3214847|Reactome: R-HSA-5689603 AMK58_20375 fc634f8c7719f65c044664adf8915540 827 Pfam PF13844 Glycosyl transferase family 41 463 613 2.1E-41 T 11-10-2018 IPR029489 O-GlcNAc transferase, C-terminal KEGG: 00514+2.4.1.255|MetaCyc: PWY-7437|Reactome: R-HSA-3214847|Reactome: R-HSA-5689603 AMK58_20375 fc634f8c7719f65c044664adf8915540 827 Gene3D G3DSA:3.40.50.2000 620 799 1.9E-157 T 11-10-2018 AMK58_20375 fc634f8c7719f65c044664adf8915540 827 SUPERFAMILY SSF48452 15 279 4.17E-41 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_20375 fc634f8c7719f65c044664adf8915540 827 SMART SM00028 10 43 0.097 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_20375 fc634f8c7719f65c044664adf8915540 827 SMART SM00028 348 381 200.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_20375 fc634f8c7719f65c044664adf8915540 827 SMART SM00028 213 246 230.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_20375 fc634f8c7719f65c044664adf8915540 827 SMART SM00028 145 178 1.1E-4 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_20375 fc634f8c7719f65c044664adf8915540 827 SMART SM00028 314 347 2.3 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_20375 fc634f8c7719f65c044664adf8915540 827 SMART SM00028 77 110 4.8 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_20375 fc634f8c7719f65c044664adf8915540 827 SMART SM00028 247 280 0.92 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_20375 fc634f8c7719f65c044664adf8915540 827 SMART SM00028 111 144 4.3E-6 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_20375 fc634f8c7719f65c044664adf8915540 827 SUPERFAMILY SSF48452 251 398 8.07E-17 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_20375 fc634f8c7719f65c044664adf8915540 827 Pfam PF13432 Tetratricopeptide repeat 285 348 3.2E-9 T 11-10-2018 AMK58_20375 fc634f8c7719f65c044664adf8915540 827 Pfam PF13432 Tetratricopeptide repeat 160 198 0.0018 T 11-10-2018 AMK58_20375 fc634f8c7719f65c044664adf8915540 827 Pfam PF13432 Tetratricopeptide repeat 16 77 7.2E-5 T 11-10-2018 AMK58_20375 fc634f8c7719f65c044664adf8915540 827 SUPERFAMILY SSF53756 465 815 1.48E-9 T 11-10-2018 AMK58_20375 fc634f8c7719f65c044664adf8915540 827 Gene3D G3DSA:3.40.50.11380 448 806 1.9E-157 T 11-10-2018 AMK58_20375 fc634f8c7719f65c044664adf8915540 827 Gene3D G3DSA:1.25.40.10 2 206 1.5E-43 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_20375 fc634f8c7719f65c044664adf8915540 827 Pfam PF13424 Tetratricopeptide repeat 79 141 6.3E-9 T 11-10-2018 AMK58_20375 fc634f8c7719f65c044664adf8915540 827 Gene3D G3DSA:1.25.40.10 207 286 3.6E-13 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_20375 fc634f8c7719f65c044664adf8915540 827 Pfam PF13374 Tetratricopeptide repeat 251 274 0.0024 T 11-10-2018 AMK58_20375 fc634f8c7719f65c044664adf8915540 827 Gene3D G3DSA:1.25.40.10 287 412 3.2E-18 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_26050 d1587d18826efde60eaff3f2364e5f76 478 Gene3D G3DSA:1.10.45.10 436 476 1.5E-14 T 11-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 AMK58_26050 d1587d18826efde60eaff3f2364e5f76 478 Gene3D G3DSA:3.30.70.2740 349 435 4.7E-30 T 11-10-2018 AMK58_26050 d1587d18826efde60eaff3f2364e5f76 478 SUPERFAMILY SSF56176 12 225 4.03E-73 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMK58_26050 d1587d18826efde60eaff3f2364e5f76 478 Pfam PF01565 FAD binding domain 49 185 6.1E-35 T 11-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMK58_26050 d1587d18826efde60eaff3f2364e5f76 478 SUPERFAMILY SSF55103 200 475 2.94E-58 T 11-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 AMK58_26050 d1587d18826efde60eaff3f2364e5f76 478 Pfam PF02913 FAD linked oxidases, C-terminal domain 225 475 5.9E-57 T 11-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 AMK58_26050 d1587d18826efde60eaff3f2364e5f76 478 Gene3D G3DSA:3.30.465.10 103 223 6.4E-45 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AMK58_26050 d1587d18826efde60eaff3f2364e5f76 478 Gene3D G3DSA:3.30.43.10 6 101 1.8E-22 T 11-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 AMK58_26050 d1587d18826efde60eaff3f2364e5f76 478 Gene3D G3DSA:3.30.70.2190 225 348 7.0E-36 T 11-10-2018 AMK58_27030 7008e49aaf1f39fa9402ee2098bcd32f 235 Pfam PF13545 Crp-like helix-turn-helix domain 164 229 1.7E-10 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMK58_27030 7008e49aaf1f39fa9402ee2098bcd32f 235 SMART SM00100 26 143 1.0E-11 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_27030 7008e49aaf1f39fa9402ee2098bcd32f 235 SUPERFAMILY SSF46785 160 232 2.53E-9 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_27030 7008e49aaf1f39fa9402ee2098bcd32f 235 SUPERFAMILY SSF51206 19 157 1.44E-25 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like AMK58_27030 7008e49aaf1f39fa9402ee2098bcd32f 235 Gene3D G3DSA:2.60.120.10 42 158 5.2E-27 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_27030 7008e49aaf1f39fa9402ee2098bcd32f 235 Pfam PF00027 Cyclic nucleotide-binding domain 45 129 1.6E-15 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_27030 7008e49aaf1f39fa9402ee2098bcd32f 235 Gene3D G3DSA:1.10.10.10 159 231 4.8E-10 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_19290 71e147bbff77e6339e30a3720342201f 233 ProDom PD008308 HUPJ HYDROGENASE EXPRESSION/FORMATION HYDROGENASE-2 HYBE COMPONENT OPERON ELECTRON METAL-BINDING IRON 79 230 6.0E-17 T 11-10-2018 IPR023994 [NiFe]-hydrogenase assembly, chaperone, HybE AMK58_19290 71e147bbff77e6339e30a3720342201f 233 Gene3D G3DSA:2.20.28.10 14 65 1.9E-17 T 11-10-2018 AMK58_19290 71e147bbff77e6339e30a3720342201f 233 PRINTS PR00163 Rubredoxin signature 15 31 3.5E-6 T 11-10-2018 IPR024935 Rubredoxin domain GO:0005506 AMK58_19290 71e147bbff77e6339e30a3720342201f 233 PRINTS PR00163 Rubredoxin signature 45 61 3.5E-6 T 11-10-2018 IPR024935 Rubredoxin domain GO:0005506 AMK58_19290 71e147bbff77e6339e30a3720342201f 233 Gene3D G3DSA:3.30.1460.40 70 198 1.1E-33 T 11-10-2018 IPR038530 [NiFe]-hydrogenase assembly, chaperone, HybE superfamily AMK58_19290 71e147bbff77e6339e30a3720342201f 233 TIGRFAM TIGR03993 hydrog_HybE: [NiFe] hydrogenase assembly chaperone, HybE family 78 228 2.2E-36 T 11-10-2018 IPR023994 [NiFe]-hydrogenase assembly, chaperone, HybE AMK58_19290 71e147bbff77e6339e30a3720342201f 233 ProSitePatterns PS00202 Rubredoxin signature. 45 55 - T 11-10-2018 IPR018527 Rubredoxin, iron-binding site GO:0046872 AMK58_19290 71e147bbff77e6339e30a3720342201f 233 Pfam PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE 75 229 1.5E-43 T 11-10-2018 IPR023994 [NiFe]-hydrogenase assembly, chaperone, HybE AMK58_19290 71e147bbff77e6339e30a3720342201f 233 Pfam PF00301 Rubredoxin 17 61 1.3E-14 T 11-10-2018 IPR024935 Rubredoxin domain GO:0005506 AMK58_19290 71e147bbff77e6339e30a3720342201f 233 SUPERFAMILY SSF57802 17 63 1.46E-14 T 11-10-2018 AMK58_14845 f6b0aab7a66d02b822a3cb413ff420a5 484 SUPERFAMILY SSF53756 217 469 4.71E-21 T 11-10-2018 AMK58_14845 f6b0aab7a66d02b822a3cb413ff420a5 484 SUPERFAMILY SSF48452 10 177 3.69E-26 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_14845 f6b0aab7a66d02b822a3cb413ff420a5 484 Gene3D G3DSA:1.25.40.10 5 199 3.1E-31 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_14845 f6b0aab7a66d02b822a3cb413ff420a5 484 Pfam PF13432 Tetratricopeptide repeat 17 72 7.1E-4 T 11-10-2018 AMK58_14845 f6b0aab7a66d02b822a3cb413ff420a5 484 Pfam PF13432 Tetratricopeptide repeat 144 191 0.0036 T 11-10-2018 AMK58_14845 f6b0aab7a66d02b822a3cb413ff420a5 484 Pfam PF13432 Tetratricopeptide repeat 77 140 2.6E-4 T 11-10-2018 AMK58_14845 f6b0aab7a66d02b822a3cb413ff420a5 484 Gene3D G3DSA:3.40.50.2000 360 439 2.4E-6 T 11-10-2018 AMK58_14845 f6b0aab7a66d02b822a3cb413ff420a5 484 SMART SM00028 38 71 24.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14845 f6b0aab7a66d02b822a3cb413ff420a5 484 SMART SM00028 72 105 10.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14845 f6b0aab7a66d02b822a3cb413ff420a5 484 SMART SM00028 140 173 47.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14845 f6b0aab7a66d02b822a3cb413ff420a5 484 SMART SM00028 106 139 0.41 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_23655 fc81a0aefbc101469fe2477f8bda815a 215 Pfam PF01914 MarC family integral membrane protein 10 210 3.7E-51 T 11-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 AMK58_23655 fc81a0aefbc101469fe2477f8bda815a 215 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 11 208 3.5E-45 T 11-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 AMK58_17740 d64c138e8ad7d694c952121315e87e41 296 Gene3D G3DSA:2.70.98.10 2 294 3.5E-80 T 11-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 AMK58_17740 d64c138e8ad7d694c952121315e87e41 296 Pfam PF01263 Aldose 1-epimerase 14 289 2.2E-37 T 11-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 AMK58_17740 d64c138e8ad7d694c952121315e87e41 296 SUPERFAMILY SSF74650 7 292 4.52E-54 T 11-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 AMK58_00055 e56988d1f665c519ff65bfcaca1de994 899 PIRSF PIRSF037677 259 843 1.5E-112 T 11-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 AMK58_00055 e56988d1f665c519ff65bfcaca1de994 899 PIRSF PIRSF037677 10 218 2.0E-34 T 11-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 AMK58_00055 e56988d1f665c519ff65bfcaca1de994 899 SUPERFAMILY SSF52540 594 828 8.96E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_00055 e56988d1f665c519ff65bfcaca1de994 899 Pfam PF05188 MutS domain II 143 268 1.6E-20 T 11-10-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 AMK58_00055 e56988d1f665c519ff65bfcaca1de994 899 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 719 735 - T 11-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 AMK58_00055 e56988d1f665c519ff65bfcaca1de994 899 Gene3D G3DSA:1.10.1420.10 405 530 1.4E-81 T 11-10-2018 AMK58_00055 e56988d1f665c519ff65bfcaca1de994 899 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 17 890 23.465 T 11-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 AMK58_00055 e56988d1f665c519ff65bfcaca1de994 899 Pfam PF05190 MutS family domain IV 451 545 1.2E-15 T 11-10-2018 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 AMK58_00055 e56988d1f665c519ff65bfcaca1de994 899 SMART SM00533 301 618 9.7E-72 T 11-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 AMK58_00055 e56988d1f665c519ff65bfcaca1de994 899 SUPERFAMILY SSF53150 132 298 8.24E-36 T 11-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 AMK58_00055 e56988d1f665c519ff65bfcaca1de994 899 Pfam PF00488 MutS domain V 641 828 1.1E-82 T 11-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 AMK58_00055 e56988d1f665c519ff65bfcaca1de994 899 Gene3D G3DSA:3.40.50.300 595 843 4.1E-92 T 11-10-2018 AMK58_00055 e56988d1f665c519ff65bfcaca1de994 899 SUPERFAMILY SSF48334 285 591 1.31E-74 T 11-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily AMK58_00055 e56988d1f665c519ff65bfcaca1de994 899 Pfam PF01624 MutS domain I 18 134 6.5E-44 T 11-10-2018 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 AMK58_00055 e56988d1f665c519ff65bfcaca1de994 899 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 18 895 8.7E-260 T 11-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 AMK58_00055 e56988d1f665c519ff65bfcaca1de994 899 Gene3D G3DSA:1.10.1420.10 284 586 1.4E-81 T 11-10-2018 AMK58_00055 e56988d1f665c519ff65bfcaca1de994 899 Pfam PF05192 MutS domain III 287 586 3.4E-39 T 11-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 AMK58_00055 e56988d1f665c519ff65bfcaca1de994 899 SMART SM00534 638 825 2.9E-110 T 11-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 AMK58_00055 e56988d1f665c519ff65bfcaca1de994 899 SUPERFAMILY SSF55271 15 130 4.32E-42 T 11-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 AMK58_00055 e56988d1f665c519ff65bfcaca1de994 899 Gene3D G3DSA:3.40.1170.10 14 136 1.4E-49 T 11-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 AMK58_00055 e56988d1f665c519ff65bfcaca1de994 899 Gene3D G3DSA:3.30.420.110 142 275 4.6E-24 T 11-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 AMK58_19895 c8698e3ff1204e90c3cc39c31aee29b9 236 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 84 101 - T 11-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site AMK58_19895 c8698e3ff1204e90c3cc39c31aee29b9 236 Gene3D G3DSA:2.60.120.10 7 151 8.0E-39 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_19895 c8698e3ff1204e90c3cc39c31aee29b9 236 Gene3D G3DSA:1.10.10.10 152 235 1.8E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_19895 c8698e3ff1204e90c3cc39c31aee29b9 236 Pfam PF00027 Cyclic nucleotide-binding domain 36 122 1.3E-23 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_19895 c8698e3ff1204e90c3cc39c31aee29b9 236 SUPERFAMILY SSF46785 151 231 5.38E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_19895 c8698e3ff1204e90c3cc39c31aee29b9 236 Pfam PF13545 Crp-like helix-turn-helix domain 155 227 4.9E-15 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMK58_19895 c8698e3ff1204e90c3cc39c31aee29b9 236 SMART SM00100 16 137 3.9E-23 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_19895 c8698e3ff1204e90c3cc39c31aee29b9 236 SUPERFAMILY SSF51206 10 145 1.7E-33 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like AMK58_19895 c8698e3ff1204e90c3cc39c31aee29b9 236 SMART SM00419 173 221 9.2E-8 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMK58_07400 c110bad81f9cba896e7436a165a686ec 420 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 261 375 1.0E-39 T 11-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal AMK58_07400 c110bad81f9cba896e7436a165a686ec 420 Gene3D G3DSA:3.40.47.10 263 408 7.5E-53 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_07400 c110bad81f9cba896e7436a165a686ec 420 PIRSF PIRSF000447 1 420 3.1E-189 T 11-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 AMK58_07400 c110bad81f9cba896e7436a165a686ec 420 Gene3D G3DSA:3.40.47.10 1 261 1.2E-87 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_07400 c110bad81f9cba896e7436a165a686ec 420 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 253 7.1E-63 T 11-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal AMK58_07400 c110bad81f9cba896e7436a165a686ec 420 SUPERFAMILY SSF53901 221 419 1.55E-72 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_07400 c110bad81f9cba896e7436a165a686ec 420 SUPERFAMILY SSF53901 1 260 6.29E-77 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_07400 c110bad81f9cba896e7436a165a686ec 420 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 2 417 1.5E-191 T 11-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 AMK58_07400 c110bad81f9cba896e7436a165a686ec 420 SMART SM00825 Beta-ketoacyl synthase 4 420 4.7E-17 T 11-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMK58_07400 c110bad81f9cba896e7436a165a686ec 420 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 160 176 - T 11-10-2018 IPR018201 Beta-ketoacyl synthase, active site AMK58_14675 0a0fd98d2070be7c19e3f791dfe4a5af 139 SUPERFAMILY SSF47188 2 125 4.19E-29 T 11-10-2018 IPR035938 Hemerythrin-like superfamily AMK58_14675 0a0fd98d2070be7c19e3f791dfe4a5af 139 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 2 125 1.6E-31 T 11-10-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 AMK58_14675 0a0fd98d2070be7c19e3f791dfe4a5af 139 ProSitePatterns PS00550 Hemerythrin family signature. 55 78 - T 11-10-2018 IPR016131 Haemerythrin, iron-binding site GO:0046872 AMK58_14675 0a0fd98d2070be7c19e3f791dfe4a5af 139 Pfam PF01814 Hemerythrin HHE cation binding domain 13 120 6.2E-10 T 11-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 AMK58_14675 0a0fd98d2070be7c19e3f791dfe4a5af 139 Gene3D G3DSA:1.20.120.50 1 129 2.1E-31 T 11-10-2018 IPR035938 Hemerythrin-like superfamily AMK58_11185 35daad50743f38b0aeed810c22244360 86 SUPERFAMILY SSF47336 2 84 1.28E-13 T 11-10-2018 IPR036736 ACP-like superfamily AMK58_11185 35daad50743f38b0aeed810c22244360 86 ProSitePatterns PS00012 Phosphopantetheine attachment site. 36 51 - T 11-10-2018 IPR006162 Phosphopantetheine attachment site AMK58_11185 35daad50743f38b0aeed810c22244360 86 Pfam PF00550 Phosphopantetheine attachment site 7 80 2.6E-12 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain AMK58_11185 35daad50743f38b0aeed810c22244360 86 Gene3D G3DSA:1.10.1200.10 3 86 1.4E-20 T 11-10-2018 IPR036736 ACP-like superfamily AMK58_15955 9290a5e5a5aaa4557d10b675772df865 360 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 11 340 6.1E-136 T 11-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMK58_15955 9290a5e5a5aaa4557d10b675772df865 360 Gene3D G3DSA:3.90.650.10 176 359 1.1E-71 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMK58_15955 9290a5e5a5aaa4557d10b675772df865 360 Gene3D G3DSA:3.30.1330.10 9 173 7.8E-68 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMK58_15955 9290a5e5a5aaa4557d10b675772df865 360 Pfam PF02769 AIR synthase related protein, C-terminal domain 180 349 9.4E-38 T 11-10-2018 IPR010918 PurM-like, C-terminal domain AMK58_15955 9290a5e5a5aaa4557d10b675772df865 360 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 10 354 45.302 T 11-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMK58_15955 9290a5e5a5aaa4557d10b675772df865 360 SUPERFAMILY SSF56042 176 345 4.93E-61 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMK58_15955 9290a5e5a5aaa4557d10b675772df865 360 Pfam PF00586 AIR synthase related protein, N-terminal domain 57 166 2.8E-15 T 11-10-2018 IPR016188 PurM-like, N-terminal domain AMK58_15955 9290a5e5a5aaa4557d10b675772df865 360 SUPERFAMILY SSF55326 11 172 3.89E-49 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMK58_22515 1e0cde1e4c4b231e45f549561976569c 256 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 14 192 4.9E-5 T 11-10-2018 AMK58_22515 1e0cde1e4c4b231e45f549561976569c 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 24 252 9.0E-63 T 11-10-2018 AMK58_22515 1e0cde1e4c4b231e45f549561976569c 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 89 100 8.1E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_22515 1e0cde1e4c4b231e45f549561976569c 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 8.1E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_22515 1e0cde1e4c4b231e45f549561976569c 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 150 8.1E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_22515 1e0cde1e4c4b231e45f549561976569c 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 148 176 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMK58_22515 1e0cde1e4c4b231e45f549561976569c 256 Gene3D G3DSA:3.40.50.720 2 254 6.6E-81 T 11-10-2018 AMK58_22515 1e0cde1e4c4b231e45f549561976569c 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 136 152 4.2E-44 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_22515 1e0cde1e4c4b231e45f549561976569c 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 4.2E-44 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_22515 1e0cde1e4c4b231e45f549561976569c 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 4.2E-44 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_22515 1e0cde1e4c4b231e45f549561976569c 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 15 32 4.2E-44 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_22515 1e0cde1e4c4b231e45f549561976569c 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 4.2E-44 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_22515 1e0cde1e4c4b231e45f549561976569c 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 89 100 4.2E-44 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_22515 1e0cde1e4c4b231e45f549561976569c 256 SUPERFAMILY SSF51735 9 252 8.1E-79 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_24410 a31d584acca0e2c91c3731a0d16e2cf6 160 SUPERFAMILY SSF54909 66 155 1.21E-24 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel AMK58_24410 a31d584acca0e2c91c3731a0d16e2cf6 160 Gene3D G3DSA:3.30.70.920 59 143 1.0E-30 T 11-10-2018 AMK58_24410 a31d584acca0e2c91c3731a0d16e2cf6 160 Pfam PF01037 Lrp/AsnC ligand binding domain 72 146 2.2E-27 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMK58_24410 a31d584acca0e2c91c3731a0d16e2cf6 160 SUPERFAMILY SSF46785 3 95 1.05E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_24410 a31d584acca0e2c91c3731a0d16e2cf6 160 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 33 52 4.6E-19 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMK58_24410 a31d584acca0e2c91c3731a0d16e2cf6 160 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 6 22 4.6E-19 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMK58_24410 a31d584acca0e2c91c3731a0d16e2cf6 160 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 22 33 4.6E-19 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMK58_24410 a31d584acca0e2c91c3731a0d16e2cf6 160 SMART SM00344 6 115 1.0E-52 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMK58_24410 a31d584acca0e2c91c3731a0d16e2cf6 160 ProSitePatterns PS00519 AsnC-type HTH domain signature. 24 50 - T 11-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site AMK58_24410 a31d584acca0e2c91c3731a0d16e2cf6 160 Gene3D G3DSA:1.10.10.10 7 58 1.5E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_24410 a31d584acca0e2c91c3731a0d16e2cf6 160 Pfam PF13412 Winged helix-turn-helix DNA-binding 6 53 8.3E-22 T 11-10-2018 AMK58_05280 af469870e57e511d6979c514f785ea67 474 Gene3D G3DSA:3.30.465.10 121 459 1.8E-118 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AMK58_05280 af469870e57e511d6979c514f785ea67 474 SUPERFAMILY SSF56176 28 221 2.48E-57 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMK58_05280 af469870e57e511d6979c514f785ea67 474 Gene3D G3DSA:3.30.43.10 30 108 2.0E-30 T 11-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 AMK58_05280 af469870e57e511d6979c514f785ea67 474 Gene3D G3DSA:3.40.462.20 221 433 1.8E-118 T 11-10-2018 AMK58_05280 af469870e57e511d6979c514f785ea67 474 Pfam PF01565 FAD binding domain 56 189 1.4E-31 T 11-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMK58_05280 af469870e57e511d6979c514f785ea67 474 ProSitePatterns PS00862 Oxygen oxidoreductases covalent FAD-binding site. 55 88 - T 11-10-2018 IPR006093 Oxygen oxidoreductase covalent FAD-binding site GO:0016491|GO:0055114 AMK58_05280 af469870e57e511d6979c514f785ea67 474 Pfam PF08031 Berberine and berberine like 428 470 1.7E-13 T 11-10-2018 IPR012951 Berberine/berberine-like GO:0016491|GO:0050660|GO:0055114 AMK58_07390 d9a1662d080c3243bcf111b234ee2772 245 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 9 243 2.6E-96 T 11-10-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AMK58_07390 d9a1662d080c3243bcf111b234ee2772 245 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 242 4.0E-64 T 11-10-2018 AMK58_07390 d9a1662d080c3243bcf111b234ee2772 245 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMK58_07390 d9a1662d080c3243bcf111b234ee2772 245 Gene3D G3DSA:3.40.50.720 1 245 8.6E-85 T 11-10-2018 AMK58_07390 d9a1662d080c3243bcf111b234ee2772 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 6.5E-47 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_07390 d9a1662d080c3243bcf111b234ee2772 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 6.5E-47 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_07390 d9a1662d080c3243bcf111b234ee2772 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 6.5E-47 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_07390 d9a1662d080c3243bcf111b234ee2772 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 6.5E-47 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_07390 d9a1662d080c3243bcf111b234ee2772 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 6.5E-47 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_07390 d9a1662d080c3243bcf111b234ee2772 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 6.5E-47 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_07390 d9a1662d080c3243bcf111b234ee2772 245 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 183 1.1E-5 T 11-10-2018 AMK58_07390 d9a1662d080c3243bcf111b234ee2772 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 3.3E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_07390 d9a1662d080c3243bcf111b234ee2772 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 3.3E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_07390 d9a1662d080c3243bcf111b234ee2772 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 3.3E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_07390 d9a1662d080c3243bcf111b234ee2772 245 SUPERFAMILY SSF51735 6 244 5.45E-85 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_27425 010a5b3acd6c7b60ce51cbcb2f2c6d54 411 Pfam PF12697 Alpha/beta hydrolase family 158 370 3.7E-6 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_27425 010a5b3acd6c7b60ce51cbcb2f2c6d54 411 Gene3D G3DSA:3.40.50.1820 130 409 9.5E-58 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_27425 010a5b3acd6c7b60ce51cbcb2f2c6d54 411 SUPERFAMILY SSF53474 22 408 6.27E-48 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_27425 010a5b3acd6c7b60ce51cbcb2f2c6d54 411 Gene3D G3DSA:1.20.1440.110 17 126 4.4E-22 T 11-10-2018 AMK58_01590 8ce435e3068ce2c434fcc7c168cfc6b3 340 SUPERFAMILY SSF51905 8 316 3.42E-39 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_01590 8ce435e3068ce2c434fcc7c168cfc6b3 340 Gene3D G3DSA:3.50.50.60 129 251 4.9E-99 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_01590 8ce435e3068ce2c434fcc7c168cfc6b3 340 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 153 177 3.4E-22 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMK58_01590 8ce435e3068ce2c434fcc7c168cfc6b3 340 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 208 224 3.4E-22 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMK58_01590 8ce435e3068ce2c434fcc7c168cfc6b3 340 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 114 122 3.4E-22 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMK58_01590 8ce435e3068ce2c434fcc7c168cfc6b3 340 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 9 31 3.4E-22 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMK58_01590 8ce435e3068ce2c434fcc7c168cfc6b3 340 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 281 299 3.4E-22 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMK58_01590 8ce435e3068ce2c434fcc7c168cfc6b3 340 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 66 76 3.4E-22 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMK58_01590 8ce435e3068ce2c434fcc7c168cfc6b3 340 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 9 296 8.2E-27 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMK58_01590 8ce435e3068ce2c434fcc7c168cfc6b3 340 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 2.2E-14 T 11-10-2018 AMK58_01590 8ce435e3068ce2c434fcc7c168cfc6b3 340 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 157 175 2.2E-14 T 11-10-2018 AMK58_01590 8ce435e3068ce2c434fcc7c168cfc6b3 340 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 113 131 2.2E-14 T 11-10-2018 AMK58_01590 8ce435e3068ce2c434fcc7c168cfc6b3 340 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 271 293 2.2E-14 T 11-10-2018 AMK58_01590 8ce435e3068ce2c434fcc7c168cfc6b3 340 Hamap MF_01685 Ferredoxin--NADP reductase. 7 334 41.498 T 11-10-2018 IPR022890 Ferredoxin--NADP reductase, type 2 GO:0004324|GO:0055114 KEGG: 00195+1.18.1.2|MetaCyc: PWY-101 AMK58_01590 8ce435e3068ce2c434fcc7c168cfc6b3 340 Gene3D G3DSA:3.50.50.60 9 313 4.9E-99 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_00260 dc04721365649c206bfd8e911fa7fe3c 268 SUPERFAMILY SSF55166 67 183 7.59E-28 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AMK58_00260 dc04721365649c206bfd8e911fa7fe3c 268 Pfam PF05951 Bacterial protein of unknown function (DUF882) 34 182 1.3E-37 T 11-10-2018 IPR010275 Protein of unknown function DUF882 AMK58_00260 dc04721365649c206bfd8e911fa7fe3c 268 Gene3D G3DSA:3.30.1380.10 73 187 1.3E-13 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AMK58_22665 cf7128acc4f5c7f939c9149c36cb74cf 397 SMART SM00387 136 247 1.8E-28 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_22665 cf7128acc4f5c7f939c9149c36cb74cf 397 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 137 245 1.9E-21 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_22665 cf7128acc4f5c7f939c9149c36cb74cf 397 Gene3D G3DSA:3.40.50.2300 274 393 6.3E-18 T 11-10-2018 AMK58_22665 cf7128acc4f5c7f939c9149c36cb74cf 397 SMART SM00448 273 387 4.1E-9 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_22665 cf7128acc4f5c7f939c9149c36cb74cf 397 Gene3D G3DSA:3.30.565.10 92 249 3.1E-32 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_22665 cf7128acc4f5c7f939c9149c36cb74cf 397 PRINTS PR00344 Bacterial sensor protein C-terminal signature 190 200 5.2E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_22665 cf7128acc4f5c7f939c9149c36cb74cf 397 PRINTS PR00344 Bacterial sensor protein C-terminal signature 172 186 5.2E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_22665 cf7128acc4f5c7f939c9149c36cb74cf 397 PRINTS PR00344 Bacterial sensor protein C-terminal signature 207 225 5.2E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_22665 cf7128acc4f5c7f939c9149c36cb74cf 397 PRINTS PR00344 Bacterial sensor protein C-terminal signature 231 244 5.2E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_22665 cf7128acc4f5c7f939c9149c36cb74cf 397 SUPERFAMILY SSF55874 81 251 1.18E-38 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_22665 cf7128acc4f5c7f939c9149c36cb74cf 397 Gene3D G3DSA:1.10.287.130 8 90 2.4E-16 T 11-10-2018 AMK58_22665 cf7128acc4f5c7f939c9149c36cb74cf 397 SMART SM00388 27 92 1.3E-14 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_22665 cf7128acc4f5c7f939c9149c36cb74cf 397 Pfam PF00072 Response regulator receiver domain 276 387 1.4E-7 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_22665 cf7128acc4f5c7f939c9149c36cb74cf 397 Pfam PF00512 His Kinase A (phospho-acceptor) domain 27 92 3.5E-14 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_22665 cf7128acc4f5c7f939c9149c36cb74cf 397 SUPERFAMILY SSF52172 276 392 4.7E-19 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_22665 cf7128acc4f5c7f939c9149c36cb74cf 397 SUPERFAMILY SSF47384 13 92 4.9E-16 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_00365 deaa09beed84f5dddfd9814d369156eb 622 SMART SM01228 540 611 2.0E-36 T 11-10-2018 AMK58_00365 deaa09beed84f5dddfd9814d369156eb 622 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 2 618 41.857 T 11-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 AMK58_00365 deaa09beed84f5dddfd9814d369156eb 622 Gene3D G3DSA:3.50.50.60 1 218 1.5E-92 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_00365 deaa09beed84f5dddfd9814d369156eb 622 Gene3D G3DSA:3.50.50.60 293 456 9.9E-57 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_00365 deaa09beed84f5dddfd9814d369156eb 622 SUPERFAMILY SSF51905 2 258 1.59E-48 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_00365 deaa09beed84f5dddfd9814d369156eb 622 Gene3D G3DSA:1.10.150.570 563 617 6.3E-19 T 11-10-2018 AMK58_00365 deaa09beed84f5dddfd9814d369156eb 622 Pfam PF13932 GidA associated domain 399 609 7.2E-71 T 11-10-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 AMK58_00365 deaa09beed84f5dddfd9814d369156eb 622 Pfam PF01134 Glucose inhibited division protein A 5 393 6.2E-166 T 11-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 AMK58_00365 deaa09beed84f5dddfd9814d369156eb 622 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 270 284 - T 11-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 AMK58_00365 deaa09beed84f5dddfd9814d369156eb 622 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 365 388 - T 11-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 AMK58_00365 deaa09beed84f5dddfd9814d369156eb 622 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 4 615 3.5E-253 T 11-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 AMK58_11050 d3e2cf38f23a257972ae2477a7b48500 234 SMART SM00345 18 76 1.9E-11 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_11050 d3e2cf38f23a257972ae2477a7b48500 234 SUPERFAMILY SSF46785 11 80 5.46E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_11050 d3e2cf38f23a257972ae2477a7b48500 234 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 72 8.2E-14 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_11050 d3e2cf38f23a257972ae2477a7b48500 234 Pfam PF07729 FCD domain 86 207 2.3E-20 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_11050 d3e2cf38f23a257972ae2477a7b48500 234 Gene3D G3DSA:1.20.120.530 80 218 5.8E-24 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_11050 d3e2cf38f23a257972ae2477a7b48500 234 Gene3D G3DSA:1.10.10.10 1 77 4.4E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_11050 d3e2cf38f23a257972ae2477a7b48500 234 SUPERFAMILY SSF48008 82 212 4.97E-23 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_11050 d3e2cf38f23a257972ae2477a7b48500 234 SMART SM00895 86 208 4.1E-16 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_11050 d3e2cf38f23a257972ae2477a7b48500 234 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 5.8E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_11050 d3e2cf38f23a257972ae2477a7b48500 234 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 5.8E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_26015 3595af76225862c668e86bfc9276562f 215 Gene3D G3DSA:3.30.530.20 3 158 4.2E-37 T 11-10-2018 IPR023393 START-like domain superfamily AMK58_26015 3595af76225862c668e86bfc9276562f 215 Pfam PF06240 Carbon monoxide dehydrogenase subunit G (CoxG) 8 147 4.1E-16 T 11-10-2018 IPR010419 Carbon monoxide dehydrogenase subunit G AMK58_26015 3595af76225862c668e86bfc9276562f 215 SUPERFAMILY SSF55961 5 148 7.04E-26 T 11-10-2018 AMK58_15080 3e263bde3a263c2da5e0a156040de171 543 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 350 534 3.8E-14 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_15080 3e263bde3a263c2da5e0a156040de171 543 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 56 257 1.4E-17 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_15080 3e263bde3a263c2da5e0a156040de171 543 Gene3D G3DSA:1.10.3720.10 1 253 2.3E-47 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_15080 3e263bde3a263c2da5e0a156040de171 543 SUPERFAMILY SSF161098 2 248 1.44E-40 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_15080 3e263bde3a263c2da5e0a156040de171 543 Gene3D G3DSA:1.10.3720.10 275 534 8.1E-38 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_15080 3e263bde3a263c2da5e0a156040de171 543 SUPERFAMILY SSF161098 271 533 5.1E-42 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_22380 dca44fe7ca1e51ee5a5b41631c6c6ba1 326 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 28 65 1.0E-11 T 11-10-2018 IPR011964 YVTN beta-propeller repeat AMK58_22380 dca44fe7ca1e51ee5a5b41631c6c6ba1 326 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 284 324 1.2E-10 T 11-10-2018 IPR011964 YVTN beta-propeller repeat AMK58_22380 dca44fe7ca1e51ee5a5b41631c6c6ba1 326 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 108 149 3.5E-10 T 11-10-2018 IPR011964 YVTN beta-propeller repeat AMK58_22380 dca44fe7ca1e51ee5a5b41631c6c6ba1 326 Gene3D G3DSA:2.130.10.10 25 228 3.0E-53 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 AMK58_22380 dca44fe7ca1e51ee5a5b41631c6c6ba1 326 TIGRFAM TIGR03866 PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein 20 326 2.1E-150 T 11-10-2018 IPR022456 PQQ-dependent catabolism-associated beta-propeller protein AMK58_22380 dca44fe7ca1e51ee5a5b41631c6c6ba1 326 SUPERFAMILY SSF50974 12 324 4.32E-75 T 11-10-2018 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 AMK58_22380 dca44fe7ca1e51ee5a5b41631c6c6ba1 326 Gene3D G3DSA:2.130.10.10 229 326 3.2E-22 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 AMK58_11390 ed3108d105994042a64f2a3a38e2ed47 1080 Pfam PF08269 Cache domain 51 345 2.3E-72 T 11-10-2018 IPR004010 Double Cache domain 2 AMK58_11390 ed3108d105994042a64f2a3a38e2ed47 1080 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 527 643 2.3E-21 T 11-10-2018 IPR000014 PAS domain AMK58_11390 ed3108d105994042a64f2a3a38e2ed47 1080 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 420 522 3.2E-8 T 11-10-2018 IPR000014 PAS domain AMK58_11390 ed3108d105994042a64f2a3a38e2ed47 1080 Gene3D G3DSA:3.30.450.20 525 645 8.8E-35 T 11-10-2018 AMK58_11390 ed3108d105994042a64f2a3a38e2ed47 1080 Gene3D G3DSA:3.30.450.20 93 236 1.4E-33 T 11-10-2018 AMK58_11390 ed3108d105994042a64f2a3a38e2ed47 1080 SUPERFAMILY SSF55785 528 635 4.71E-28 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_11390 ed3108d105994042a64f2a3a38e2ed47 1080 SUPERFAMILY SSF55785 425 523 2.97E-15 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_11390 ed3108d105994042a64f2a3a38e2ed47 1080 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 645 806 1.0E-40 T 11-10-2018 IPR000160 GGDEF domain AMK58_11390 ed3108d105994042a64f2a3a38e2ed47 1080 SMART SM00267 637 809 6.5E-63 T 11-10-2018 IPR000160 GGDEF domain AMK58_11390 ed3108d105994042a64f2a3a38e2ed47 1080 Pfam PF13426 PAS domain 534 636 7.8E-17 T 11-10-2018 IPR000014 PAS domain AMK58_11390 ed3108d105994042a64f2a3a38e2ed47 1080 Pfam PF13188 PAS domain 409 469 0.04 T 11-10-2018 IPR000014 PAS domain AMK58_11390 ed3108d105994042a64f2a3a38e2ed47 1080 Gene3D G3DSA:3.30.450.20 419 524 5.1E-14 T 11-10-2018 AMK58_11390 ed3108d105994042a64f2a3a38e2ed47 1080 SMART SM00091 523 589 7.6E-7 T 11-10-2018 IPR000014 PAS domain AMK58_11390 ed3108d105994042a64f2a3a38e2ed47 1080 SMART SM00091 414 484 8.9 T 11-10-2018 IPR000014 PAS domain AMK58_11390 ed3108d105994042a64f2a3a38e2ed47 1080 SMART SM00086 475 515 0.065 T 11-10-2018 IPR001610 PAC motif AMK58_11390 ed3108d105994042a64f2a3a38e2ed47 1080 SMART SM00086 595 637 7.7E-4 T 11-10-2018 IPR001610 PAC motif AMK58_11390 ed3108d105994042a64f2a3a38e2ed47 1080 Pfam PF00563 EAL domain 825 1059 3.8E-70 T 11-10-2018 IPR001633 EAL domain AMK58_11390 ed3108d105994042a64f2a3a38e2ed47 1080 SMART SM01049 226 293 3.1 T 11-10-2018 IPR033480 Single Cache domain 2 AMK58_11390 ed3108d105994042a64f2a3a38e2ed47 1080 SMART SM01049 86 180 3.3E-19 T 11-10-2018 IPR033480 Single Cache domain 2 AMK58_11390 ed3108d105994042a64f2a3a38e2ed47 1080 Pfam PF00990 Diguanylate cyclase, GGDEF domain 648 804 6.8E-47 T 11-10-2018 IPR000160 GGDEF domain AMK58_11390 ed3108d105994042a64f2a3a38e2ed47 1080 SUPERFAMILY SSF55073 653 811 1.1E-48 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_11390 ed3108d105994042a64f2a3a38e2ed47 1080 SUPERFAMILY SSF141868 824 1072 2.88E-88 T 11-10-2018 IPR035919 EAL domain superfamily AMK58_11390 ed3108d105994042a64f2a3a38e2ed47 1080 Gene3D G3DSA:3.30.70.270 646 822 5.6E-60 T 11-10-2018 AMK58_11390 ed3108d105994042a64f2a3a38e2ed47 1080 Gene3D G3DSA:3.30.450.20 237 364 1.0E-21 T 11-10-2018 AMK58_11390 ed3108d105994042a64f2a3a38e2ed47 1080 Gene3D G3DSA:3.20.20.450 823 1073 6.4E-96 T 11-10-2018 IPR035919 EAL domain superfamily AMK58_11390 ed3108d105994042a64f2a3a38e2ed47 1080 SMART SM00052 819 1064 1.1E-110 T 11-10-2018 IPR001633 EAL domain AMK58_27565 8aa0c18eef8fbc7ef1796088fd912109 314 SUPERFAMILY SSF89372 80 311 1.57E-13 T 11-10-2018 AMK58_10990 dd4b86cbad4f8f2f3c29a772c618a035 135 SUPERFAMILY SSF51120 10 107 8.63E-6 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_12305 f1c86db4b167e7c3391a81478053f32e 375 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 248 282 5.1E-8 T 11-10-2018 IPR001451 Hexapeptide repeat AMK58_12305 f1c86db4b167e7c3391a81478053f32e 375 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 283 317 2.7E-5 T 11-10-2018 IPR001451 Hexapeptide repeat AMK58_12305 f1c86db4b167e7c3391a81478053f32e 375 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 155 188 1.7E-7 T 11-10-2018 IPR001451 Hexapeptide repeat AMK58_12305 f1c86db4b167e7c3391a81478053f32e 375 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 118 151 1.5E-6 T 11-10-2018 IPR001451 Hexapeptide repeat AMK58_12305 f1c86db4b167e7c3391a81478053f32e 375 Gene3D G3DSA:2.160.10.10 108 332 2.7E-61 T 11-10-2018 AMK58_12305 f1c86db4b167e7c3391a81478053f32e 375 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 120 148 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AMK58_12305 f1c86db4b167e7c3391a81478053f32e 375 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 114 142 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AMK58_12305 f1c86db4b167e7c3391a81478053f32e 375 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 292 320 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AMK58_12305 f1c86db4b167e7c3391a81478053f32e 375 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 211 241 0.012 T 11-10-2018 IPR001451 Hexapeptide repeat AMK58_12305 f1c86db4b167e7c3391a81478053f32e 375 SUPERFAMILY SSF51161 63 339 7.21E-71 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily AMK58_12305 f1c86db4b167e7c3391a81478053f32e 375 Gene3D G3DSA:3.40.1390.10 5 105 4.5E-9 T 11-10-2018 AMK58_12305 f1c86db4b167e7c3391a81478053f32e 375 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 15 350 30.696 T 11-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 AMK58_05935 77e3ed72865a5e02d18f1632c460b922 297 SUPERFAMILY SSF53271 11 158 4.44E-29 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like AMK58_05935 77e3ed72865a5e02d18f1632c460b922 297 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 14 294 3.1E-46 T 11-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 AMK58_05935 77e3ed72865a5e02d18f1632c460b922 297 Pfam PF00156 Phosphoribosyl transferase domain 149 247 4.8E-11 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMK58_05935 77e3ed72865a5e02d18f1632c460b922 297 Gene3D G3DSA:3.40.50.2020 150 285 3.4E-22 T 11-10-2018 AMK58_05935 77e3ed72865a5e02d18f1632c460b922 297 SUPERFAMILY SSF53271 85 270 2.49E-26 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like AMK58_05935 77e3ed72865a5e02d18f1632c460b922 297 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 17 114 1.1E-14 T 11-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 AMK58_05935 77e3ed72865a5e02d18f1632c460b922 297 SMART SM01400 5 118 2.4E-25 T 11-10-2018 AMK58_05935 77e3ed72865a5e02d18f1632c460b922 297 Gene3D G3DSA:3.40.50.2020 7 149 1.4E-33 T 11-10-2018 AMK58_20545 d101dc47a9e4d1fa8403e76a2361e84b 481 Pfam PF13727 CoA-binding domain 77 210 3.9E-9 T 11-10-2018 AMK58_20545 d101dc47a9e4d1fa8403e76a2361e84b 481 SUPERFAMILY SSF51735 154 226 2.28E-7 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_20545 d101dc47a9e4d1fa8403e76a2361e84b 481 Pfam PF02397 Bacterial sugar transferase 285 476 3.0E-59 T 11-10-2018 IPR003362 Bacterial sugar transferase AMK58_20545 d101dc47a9e4d1fa8403e76a2361e84b 481 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 32 480 1.9E-97 T 11-10-2018 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase AMK58_20545 d101dc47a9e4d1fa8403e76a2361e84b 481 Gene3D G3DSA:3.40.50.720 151 251 1.3E-11 T 11-10-2018 AMK58_18420 f42939b0d269ae23dd25ce6c6b9afc3c 171 SUPERFAMILY SSF53271 1 167 3.02E-49 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like AMK58_18420 f42939b0d269ae23dd25ce6c6b9afc3c 171 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 3 168 2.1E-61 T 11-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 AMK58_18420 f42939b0d269ae23dd25ce6c6b9afc3c 171 Gene3D G3DSA:3.40.50.2020 1 171 2.5E-61 T 11-10-2018 AMK58_18420 f42939b0d269ae23dd25ce6c6b9afc3c 171 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 3 169 35.736 T 11-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 AMK58_18420 f42939b0d269ae23dd25ce6c6b9afc3c 171 Pfam PF00156 Phosphoribosyl transferase domain 32 147 2.5E-17 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMK58_28500 149884b658cce465c1ebe674ba743848 448 TIGRFAM TIGR02485 CobZ_N-term: precorrin 3B synthase CobZ 14 447 1.7E-157 T 11-10-2018 IPR012831 Precorrin 3B synthase CobZ AMK58_28500 149884b658cce465c1ebe674ba743848 448 SUPERFAMILY SSF56425 258 382 2.09E-15 T 11-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMK58_28500 149884b658cce465c1ebe674ba743848 448 SUPERFAMILY SSF51905 13 446 7.57E-33 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_28500 149884b658cce465c1ebe674ba743848 448 Gene3D G3DSA:3.90.700.10 245 383 2.2E-77 T 11-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMK58_28500 149884b658cce465c1ebe674ba743848 448 Gene3D G3DSA:3.50.50.60 13 442 2.2E-77 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_28500 149884b658cce465c1ebe674ba743848 448 Pfam PF00890 FAD binding domain 14 417 1.2E-34 T 11-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMK58_10850 2dc54003086072caa68d48d2e82ea12c 161 TIGRFAM TIGR04430 OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD 3 144 2.9E-44 T 11-10-2018 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 AMK58_10850 2dc54003086072caa68d48d2e82ea12c 161 Pfam PF02470 MlaD protein 36 113 2.7E-20 T 11-10-2018 IPR003399 Mce/MlaD AMK58_19090 82616306740695e9158161bce5abb06f 621 Pfam PF04851 Type III restriction enzyme, res subunit 12 170 5.6E-6 T 11-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 AMK58_19090 82616306740695e9158161bce5abb06f 621 Gene3D G3DSA:3.40.50.300 3 179 2.9E-11 T 11-10-2018 AMK58_19090 82616306740695e9158161bce5abb06f 621 SUPERFAMILY SSF52540 17 402 1.38E-15 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_19090 82616306740695e9158161bce5abb06f 621 Gene3D G3DSA:3.40.50.300 206 439 1.6E-16 T 11-10-2018 AMK58_03500 7f4c9702f2cb010c59cb79abe001a6bc 286 Gene3D G3DSA:3.40.190.10 184 235 5.7E-9 T 11-10-2018 AMK58_03500 7f4c9702f2cb010c59cb79abe001a6bc 286 SUPERFAMILY SSF53850 32 275 4.85E-26 T 11-10-2018 AMK58_03500 7f4c9702f2cb010c59cb79abe001a6bc 286 Gene3D G3DSA:3.40.190.10 26 97 9.3E-13 T 11-10-2018 AMK58_03500 7f4c9702f2cb010c59cb79abe001a6bc 286 SMART SM00062 40 280 0.0014 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMK58_03500 7f4c9702f2cb010c59cb79abe001a6bc 286 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 41 86 7.0E-10 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMK58_03500 7f4c9702f2cb010c59cb79abe001a6bc 286 Gene3D G3DSA:3.40.190.10 236 276 5.7E-9 T 11-10-2018 AMK58_03500 7f4c9702f2cb010c59cb79abe001a6bc 286 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 129 277 8.8E-8 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMK58_25760 335c731c8e286e14626a69d17c8b2653 157 SUPERFAMILY SSF46785 2 91 1.52E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_25760 335c731c8e286e14626a69d17c8b2653 157 SUPERFAMILY SSF54909 62 143 1.61E-19 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel AMK58_25760 335c731c8e286e14626a69d17c8b2653 157 SMART SM00344 1 110 3.1E-45 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMK58_25760 335c731c8e286e14626a69d17c8b2653 157 Gene3D G3DSA:3.30.70.920 54 137 1.7E-24 T 11-10-2018 AMK58_25760 335c731c8e286e14626a69d17c8b2653 157 Gene3D G3DSA:1.10.10.10 1 53 3.0E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_25760 335c731c8e286e14626a69d17c8b2653 157 Pfam PF13404 AsnC-type helix-turn-helix domain 1 42 4.8E-19 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMK58_25760 335c731c8e286e14626a69d17c8b2653 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 3.0E-14 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMK58_25760 335c731c8e286e14626a69d17c8b2653 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 3.0E-14 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMK58_25760 335c731c8e286e14626a69d17c8b2653 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 3.0E-14 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMK58_25760 335c731c8e286e14626a69d17c8b2653 157 ProSitePatterns PS00519 AsnC-type HTH domain signature. 19 45 - T 11-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site AMK58_25760 335c731c8e286e14626a69d17c8b2653 157 Pfam PF01037 Lrp/AsnC ligand binding domain 67 140 2.5E-20 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMK58_21545 2e9b1f69ec9008d2c8a4255cc99333b6 309 Pfam PF09163 Formate dehydrogenase N, transmembrane 243 286 9.2E-21 T 11-10-2018 IPR015246 Formate dehydrogenase, transmembrane AMK58_21545 2e9b1f69ec9008d2c8a4255cc99333b6 309 Gene3D G3DSA:1.20.5.480 244 291 3.1E-15 T 11-10-2018 IPR038384 Formate dehydrogenase, C-terminal domain superfamily AMK58_21545 2e9b1f69ec9008d2c8a4255cc99333b6 309 TIGRFAM TIGR01582 FDH-beta: formate dehydrogenase, beta subunit 7 286 6.4E-140 T 11-10-2018 IPR006470 Formate dehydrogenase iron-sulphur subunit, Proteobacteria GO:0015944|GO:0016021|GO:0045333|GO:0051539 AMK58_21545 2e9b1f69ec9008d2c8a4255cc99333b6 309 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 130 141 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMK58_21545 2e9b1f69ec9008d2c8a4255cc99333b6 309 Pfam PF13247 4Fe-4S dicluster domain 89 185 9.0E-24 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMK58_21545 2e9b1f69ec9008d2c8a4255cc99333b6 309 PIRSF PIRSF036298 1 308 2.3E-150 T 11-10-2018 IPR014603 Formate dehydrogenase iron-sulphur subunit GO:0015944|GO:0045333|GO:0051539 AMK58_21545 2e9b1f69ec9008d2c8a4255cc99333b6 309 Gene3D G3DSA:3.30.70.20 19 159 1.5E-96 T 11-10-2018 AMK58_21545 2e9b1f69ec9008d2c8a4255cc99333b6 309 Gene3D G3DSA:3.30.70.20 25 224 1.5E-96 T 11-10-2018 AMK58_21545 2e9b1f69ec9008d2c8a4255cc99333b6 309 SUPERFAMILY SSF54862 26 286 6.38E-72 T 11-10-2018 AMK58_25525 942a12e150d13dbe1a1f923aeccf0497 178 SUPERFAMILY SSF54909 100 163 1.11E-10 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel AMK58_25525 942a12e150d13dbe1a1f923aeccf0497 178 Gene3D G3DSA:3.30.70.100 82 170 1.4E-15 T 11-10-2018 AMK58_25525 942a12e150d13dbe1a1f923aeccf0497 178 Pfam PF03992 Antibiotic biosynthesis monooxygenase 100 158 1.4E-7 T 11-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain AMK58_17915 674329159cf970abbbf0eb2a0bd51eeb 275 SUPERFAMILY SSF52402 1 141 4.19E-12 T 11-10-2018 AMK58_17915 674329159cf970abbbf0eb2a0bd51eeb 275 Pfam PF00582 Universal stress protein family 3 141 2.0E-7 T 11-10-2018 IPR006016 UspA AMK58_17915 674329159cf970abbbf0eb2a0bd51eeb 275 Pfam PF00582 Universal stress protein family 155 273 1.9E-6 T 11-10-2018 IPR006016 UspA AMK58_17915 674329159cf970abbbf0eb2a0bd51eeb 275 SUPERFAMILY SSF52402 151 273 2.34E-14 T 11-10-2018 AMK58_17915 674329159cf970abbbf0eb2a0bd51eeb 275 PRINTS PR01438 Universal stress protein signature 3 21 1.9E-5 T 11-10-2018 IPR006015 Universal stress protein A AMK58_17915 674329159cf970abbbf0eb2a0bd51eeb 275 PRINTS PR01438 Universal stress protein signature 253 275 1.9E-5 T 11-10-2018 IPR006015 Universal stress protein A AMK58_17915 674329159cf970abbbf0eb2a0bd51eeb 275 PRINTS PR01438 Universal stress protein signature 235 247 1.9E-5 T 11-10-2018 IPR006015 Universal stress protein A AMK58_17915 674329159cf970abbbf0eb2a0bd51eeb 275 Gene3D G3DSA:3.40.50.12370 5 274 2.3E-28 T 11-10-2018 AMK58_17195 058364d31fddfc923f0eec228f51692d 451 Pfam PF01458 Uncharacterized protein family (UPF0051) 199 423 7.9E-79 T 11-10-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 AMK58_17195 058364d31fddfc923f0eec228f51692d 451 TIGRFAM TIGR01981 sufD: FeS assembly protein SufD 163 439 6.6E-90 T 11-10-2018 IPR011542 SUF system FeS cluster assembly, SufD GO:0016226 AMK58_17195 058364d31fddfc923f0eec228f51692d 451 SUPERFAMILY SSF101960 38 445 3.79E-114 T 11-10-2018 IPR037284 SUF system FeS cluster assembly, SufBD superfamily AMK58_06120 ed59261039e8f554cbbffe4cb4838e73 209 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 34 154 1.2E-46 T 11-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06120 ed59261039e8f554cbbffe4cb4838e73 209 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 85 140 9.0E-20 T 11-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06120 ed59261039e8f554cbbffe4cb4838e73 209 SUPERFAMILY SSF143243 8 187 4.18E-62 T 11-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06120 ed59261039e8f554cbbffe4cb4838e73 209 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 33 152 5.5E-46 T 11-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06120 ed59261039e8f554cbbffe4cb4838e73 209 Gene3D G3DSA:3.30.460.80 1 133 8.2E-45 T 11-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06120 ed59261039e8f554cbbffe4cb4838e73 209 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 9 161 30.883 T 11-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06120 ed59261039e8f554cbbffe4cb4838e73 209 ProSitePatterns PS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature. 114 135 - T 11-10-2018 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_18880 deab603677a2bbadc0103b606399a223 399 Hamap MF_01113 DNA polymerase IV [dinB]. 41 389 33.847 T 11-10-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 AMK58_18880 deab603677a2bbadc0103b606399a223 399 SUPERFAMILY SSF56672 43 273 9.78E-77 T 11-10-2018 AMK58_18880 deab603677a2bbadc0103b606399a223 399 Pfam PF00817 impB/mucB/samB family 47 193 2.8E-43 T 11-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AMK58_18880 deab603677a2bbadc0103b606399a223 399 SUPERFAMILY SSF100879 280 383 1.53E-25 T 11-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AMK58_18880 deab603677a2bbadc0103b606399a223 399 Gene3D G3DSA:1.10.150.20 214 266 6.8E-68 T 11-10-2018 AMK58_18880 deab603677a2bbadc0103b606399a223 399 Gene3D G3DSA:3.30.70.270 44 273 6.8E-68 T 11-10-2018 AMK58_18880 deab603677a2bbadc0103b606399a223 399 Gene3D G3DSA:2.30.40.20 61 111 6.8E-68 T 11-10-2018 AMK58_18880 deab603677a2bbadc0103b606399a223 399 Gene3D G3DSA:3.30.1490.100 279 385 5.9E-25 T 11-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AMK58_18880 deab603677a2bbadc0103b606399a223 399 Pfam PF11799 impB/mucB/samB family C-terminal domain 273 384 3.4E-18 T 11-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AMK58_17315 dbe8a35cb3431bd2db497136325639de 135 Gene3D G3DSA:3.40.50.2300 7 132 4.7E-28 T 11-10-2018 AMK58_17315 dbe8a35cb3431bd2db497136325639de 135 SMART SM00448 9 123 1.5E-18 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_17315 dbe8a35cb3431bd2db497136325639de 135 SUPERFAMILY SSF52172 8 131 3.98E-29 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_17315 dbe8a35cb3431bd2db497136325639de 135 Pfam PF00072 Response regulator receiver domain 11 119 2.0E-19 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_18380 18ea1752973b9700341328fb547934d2 335 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 6 324 6.2E-97 T 11-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 AMK58_18380 18ea1752973b9700341328fb547934d2 335 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 6 213 6.1E-44 T 11-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 AMK58_01725 bb0d3350cfdaca401caf5877d7d2301d 249 SUPERFAMILY SSF54001 23 235 5.97E-30 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily AMK58_01725 bb0d3350cfdaca401caf5877d7d2301d 249 Gene3D G3DSA:3.90.70.10 1 247 3.5E-47 T 11-10-2018 AMK58_01725 bb0d3350cfdaca401caf5877d7d2301d 249 ProSitePatterns PS00639 Eukaryotic thiol (cysteine) proteases histidine active site. 199 209 - T 11-10-2018 IPR025660 Cysteine peptidase, histidine active site Reactome: R-HSA-2132295 AMK58_01725 bb0d3350cfdaca401caf5877d7d2301d 249 Pfam PF00112 Papain family cysteine protease 27 233 9.7E-14 T 11-10-2018 IPR000668 Peptidase C1A, papain C-terminal GO:0006508|GO:0008234 AMK58_01725 bb0d3350cfdaca401caf5877d7d2301d 249 SMART SM00645 26 241 7.7E-5 T 11-10-2018 IPR000668 Peptidase C1A, papain C-terminal GO:0006508|GO:0008234 AMK58_16040 464d4a5ee6d3c061b57e00ac306697fb 512 SMART SM00387 393 509 5.7E-37 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_16040 464d4a5ee6d3c061b57e00ac306697fb 512 SMART SM00065 90 264 4.8E-7 T 11-10-2018 IPR003018 GAF domain GO:0005515 AMK58_16040 464d4a5ee6d3c061b57e00ac306697fb 512 SUPERFAMILY SSF55874 336 506 6.55E-43 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_16040 464d4a5ee6d3c061b57e00ac306697fb 512 Gene3D G3DSA:1.10.287.130 250 345 8.9E-26 T 11-10-2018 AMK58_16040 464d4a5ee6d3c061b57e00ac306697fb 512 Gene3D G3DSA:3.30.450.40 62 249 1.4E-37 T 11-10-2018 IPR029016 GAF-like domain superfamily AMK58_16040 464d4a5ee6d3c061b57e00ac306697fb 512 Gene3D G3DSA:3.30.450.320 22 194 1.4E-37 T 11-10-2018 AMK58_16040 464d4a5ee6d3c061b57e00ac306697fb 512 Pfam PF00512 His Kinase A (phospho-acceptor) domain 279 347 2.1E-19 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_16040 464d4a5ee6d3c061b57e00ac306697fb 512 SMART SM00388 279 347 8.9E-23 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_16040 464d4a5ee6d3c061b57e00ac306697fb 512 PRINTS PR00344 Bacterial sensor protein C-terminal signature 434 448 3.7E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_16040 464d4a5ee6d3c061b57e00ac306697fb 512 PRINTS PR00344 Bacterial sensor protein C-terminal signature 493 506 3.7E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_16040 464d4a5ee6d3c061b57e00ac306697fb 512 PRINTS PR00344 Bacterial sensor protein C-terminal signature 469 487 3.7E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_16040 464d4a5ee6d3c061b57e00ac306697fb 512 SUPERFAMILY SSF47384 269 348 4.12E-22 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_16040 464d4a5ee6d3c061b57e00ac306697fb 512 Pfam PF01590 GAF domain 91 247 2.6E-11 T 11-10-2018 IPR003018 GAF domain GO:0005515 AMK58_16040 464d4a5ee6d3c061b57e00ac306697fb 512 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 394 508 3.4E-25 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_16040 464d4a5ee6d3c061b57e00ac306697fb 512 Gene3D G3DSA:3.30.565.10 346 509 1.5E-40 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_16040 464d4a5ee6d3c061b57e00ac306697fb 512 SUPERFAMILY SSF55781 84 258 3.08E-29 T 11-10-2018 AMK58_17640 8b8a623189fd634ce93b3ef1b339611b 465 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 5 465 1.2E-179 T 11-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 AMK58_17640 8b8a623189fd634ce93b3ef1b339611b 465 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 40 50 - T 11-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 AMK58_17640 8b8a623189fd634ce93b3ef1b339611b 465 SUPERFAMILY SSF51905 2 371 5.1E-67 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_17640 8b8a623189fd634ce93b3ef1b339611b 465 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 346 454 2.2E-37 T 11-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMK58_17640 8b8a623189fd634ce93b3ef1b339611b 465 PIRSF PIRSF000350 1 459 5.6E-87 T 11-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 AMK58_17640 8b8a623189fd634ce93b3ef1b339611b 465 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 326 4.0E-66 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMK58_17640 8b8a623189fd634ce93b3ef1b339611b 465 Gene3D G3DSA:3.50.50.60 6 332 9.6E-117 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_17640 8b8a623189fd634ce93b3ef1b339611b 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 306 313 5.3E-72 T 11-10-2018 AMK58_17640 8b8a623189fd634ce93b3ef1b339611b 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 5.3E-72 T 11-10-2018 AMK58_17640 8b8a623189fd634ce93b3ef1b339611b 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 429 449 5.3E-72 T 11-10-2018 AMK58_17640 8b8a623189fd634ce93b3ef1b339611b 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 176 201 5.3E-72 T 11-10-2018 AMK58_17640 8b8a623189fd634ce93b3ef1b339611b 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 39 54 5.3E-72 T 11-10-2018 AMK58_17640 8b8a623189fd634ce93b3ef1b339611b 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 407 422 5.3E-72 T 11-10-2018 AMK58_17640 8b8a623189fd634ce93b3ef1b339611b 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 264 278 5.3E-72 T 11-10-2018 AMK58_17640 8b8a623189fd634ce93b3ef1b339611b 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 140 149 5.3E-72 T 11-10-2018 AMK58_17640 8b8a623189fd634ce93b3ef1b339611b 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 342 363 5.3E-72 T 11-10-2018 AMK58_17640 8b8a623189fd634ce93b3ef1b339611b 465 Gene3D G3DSA:3.30.390.30 345 465 6.0E-44 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMK58_17640 8b8a623189fd634ce93b3ef1b339611b 465 Gene3D G3DSA:3.50.50.60 152 273 9.6E-117 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_17640 8b8a623189fd634ce93b3ef1b339611b 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 176 194 1.6E-42 T 11-10-2018 AMK58_17640 8b8a623189fd634ce93b3ef1b339611b 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 263 279 1.6E-42 T 11-10-2018 AMK58_17640 8b8a623189fd634ce93b3ef1b339611b 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 1.6E-42 T 11-10-2018 AMK58_17640 8b8a623189fd634ce93b3ef1b339611b 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 137 155 1.6E-42 T 11-10-2018 AMK58_17640 8b8a623189fd634ce93b3ef1b339611b 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 291 313 1.6E-42 T 11-10-2018 AMK58_17640 8b8a623189fd634ce93b3ef1b339611b 465 SUPERFAMILY SSF55424 342 464 5.15E-41 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMK58_19675 5e623e546a45d301d022cfe2d5f33543 367 SUPERFAMILY SSF111369 47 105 5.62E-7 T 11-10-2018 AMK58_19675 5e623e546a45d301d022cfe2d5f33543 367 Pfam PF00529 HlyD membrane-fusion protein of T1SS 31 340 2.9E-10 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMK58_19675 5e623e546a45d301d022cfe2d5f33543 367 Gene3D G3DSA:2.40.50.100 47 105 6.6E-9 T 11-10-2018 AMK58_19675 5e623e546a45d301d022cfe2d5f33543 367 Gene3D G3DSA:2.40.30.170 227 351 6.7E-37 T 11-10-2018 AMK58_19675 5e623e546a45d301d022cfe2d5f33543 367 Gene3D G3DSA:1.10.287.470 106 212 1.2E-7 T 11-10-2018 AMK58_19675 5e623e546a45d301d022cfe2d5f33543 367 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 44 288 3.2E-18 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMK58_19675 5e623e546a45d301d022cfe2d5f33543 367 SUPERFAMILY SSF111369 155 282 5.75E-13 T 11-10-2018 AMK58_00575 485241374f66a55ca5ebc5b8175b4a9d 294 TIGRFAM TIGR03298 argP: transcriptional regulator, ArgP family 2 290 5.9E-113 T 11-10-2018 IPR017685 HTH-type transcriptional regulator ArgP AMK58_00575 485241374f66a55ca5ebc5b8175b4a9d 294 Pfam PF03466 LysR substrate binding domain 93 278 1.1E-19 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_00575 485241374f66a55ca5ebc5b8175b4a9d 294 Gene3D G3DSA:3.40.190.290 89 291 2.7E-77 T 11-10-2018 AMK58_00575 485241374f66a55ca5ebc5b8175b4a9d 294 SUPERFAMILY SSF46785 1 111 2.33E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_00575 485241374f66a55ca5ebc5b8175b4a9d 294 SUPERFAMILY SSF53850 85 277 1.36E-23 T 11-10-2018 AMK58_00575 485241374f66a55ca5ebc5b8175b4a9d 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 61 2.4E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_00575 485241374f66a55ca5ebc5b8175b4a9d 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 9.4E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_00575 485241374f66a55ca5ebc5b8175b4a9d 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 9.4E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_00575 485241374f66a55ca5ebc5b8175b4a9d 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 9.4E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_00575 485241374f66a55ca5ebc5b8175b4a9d 294 Gene3D G3DSA:1.10.10.10 1 82 4.3E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_20510 a6bdb3f4e3027a49b752033337e98719 759 Gene3D G3DSA:3.40.50.300 198 350 8.7E-118 T 11-10-2018 AMK58_20510 a6bdb3f4e3027a49b752033337e98719 759 SMART SM00490 382 471 5.7E-17 T 11-10-2018 IPR001650 Helicase, C-terminal AMK58_20510 a6bdb3f4e3027a49b752033337e98719 759 Gene3D G3DSA:1.20.58.1080 576 674 2.9E-6 T 11-10-2018 AMK58_20510 a6bdb3f4e3027a49b752033337e98719 759 SUPERFAMILY SSF52540 210 482 4.19E-28 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_20510 a6bdb3f4e3027a49b752033337e98719 759 Gene3D G3DSA:1.20.272.40 498 570 8.7E-118 T 11-10-2018 AMK58_20510 a6bdb3f4e3027a49b752033337e98719 759 Gene3D G3DSA:3.40.50.300 351 497 8.7E-118 T 11-10-2018 AMK58_20510 a6bdb3f4e3027a49b752033337e98719 759 Pfam PF00271 Helicase conserved C-terminal domain 366 471 5.1E-12 T 11-10-2018 IPR001650 Helicase, C-terminal AMK58_20510 a6bdb3f4e3027a49b752033337e98719 759 Pfam PF12513 Mitochondrial degradasome RNA helicase subunit C terminal 620 666 3.5E-13 T 11-10-2018 IPR022192 Mitochondrial degradasome RNA helicase subunit, C-terminal domain GO:0016817 AMK58_20995 70e86cd53d2827d2e8e31ca023bf5e41 264 Pfam PF03476 MOSC N-terminal beta barrel domain 3 97 1.1E-5 T 11-10-2018 IPR005303 MOSC, N-terminal beta barrel KEGG: 00790+2.8.1.9|MetaCyc: PWY-5963 AMK58_20995 70e86cd53d2827d2e8e31ca023bf5e41 264 Gene3D G3DSA:2.40.33.20 134 263 3.2E-17 T 11-10-2018 AMK58_20995 70e86cd53d2827d2e8e31ca023bf5e41 264 Pfam PF03473 MOSC domain 141 256 2.1E-16 T 11-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 AMK58_20995 70e86cd53d2827d2e8e31ca023bf5e41 264 SUPERFAMILY SSF50800 2 257 5.23E-24 T 11-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily AMK58_24690 ca0d028731734efcb2e623484492a5ca 296 ProSitePatterns PS00146 Beta-lactamase class-A active site. 71 86 - T 11-10-2018 IPR023650 Beta-lactamase, class-A active site KEGG: 00311+3.5.2.6 AMK58_24690 ca0d028731734efcb2e623484492a5ca 296 PRINTS PR00118 Beta-lactamase class A signature 69 86 3.2E-61 T 11-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 AMK58_24690 ca0d028731734efcb2e623484492a5ca 296 PRINTS PR00118 Beta-lactamase class A signature 112 137 3.2E-61 T 11-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 AMK58_24690 ca0d028731734efcb2e623484492a5ca 296 PRINTS PR00118 Beta-lactamase class A signature 227 242 3.2E-61 T 11-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 AMK58_24690 ca0d028731734efcb2e623484492a5ca 296 PRINTS PR00118 Beta-lactamase class A signature 210 225 3.2E-61 T 11-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 AMK58_24690 ca0d028731734efcb2e623484492a5ca 296 PRINTS PR00118 Beta-lactamase class A signature 148 172 3.2E-61 T 11-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 AMK58_24690 ca0d028731734efcb2e623484492a5ca 296 PRINTS PR00118 Beta-lactamase class A signature 174 199 3.2E-61 T 11-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 AMK58_24690 ca0d028731734efcb2e623484492a5ca 296 PRINTS PR00118 Beta-lactamase class A signature 38 62 3.2E-61 T 11-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 AMK58_24690 ca0d028731734efcb2e623484492a5ca 296 Gene3D G3DSA:3.40.710.10 34 296 7.8E-88 T 11-10-2018 AMK58_24690 ca0d028731734efcb2e623484492a5ca 296 Pfam PF13354 Beta-lactamase enzyme family 58 264 9.4E-48 T 11-10-2018 AMK58_24690 ca0d028731734efcb2e623484492a5ca 296 SUPERFAMILY SSF56601 35 292 8.66E-81 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMK58_07015 cc15597144a471ec4e14dfee1cb2f606 513 TIGRFAM TIGR04381 HTH_TypR: TyrR family helix-turn-helix domain 464 510 2.0E-22 T 11-10-2018 IPR030828 TyrR family, helix-turn-helix domain GO:0003677 AMK58_07015 cc15597144a471ec4e14dfee1cb2f606 513 SMART SM00382 221 366 5.8E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_07015 cc15597144a471ec4e14dfee1cb2f606 513 Pfam PF00158 Sigma-54 interaction domain 201 368 1.9E-64 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AMK58_07015 cc15597144a471ec4e14dfee1cb2f606 513 Gene3D G3DSA:3.40.50.300 191 372 5.4E-64 T 11-10-2018 AMK58_07015 cc15597144a471ec4e14dfee1cb2f606 513 Gene3D G3DSA:1.10.10.60 457 510 6.7E-21 T 11-10-2018 AMK58_07015 cc15597144a471ec4e14dfee1cb2f606 513 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 225 238 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AMK58_07015 cc15597144a471ec4e14dfee1cb2f606 513 SMART SM00091 79 146 9.7E-5 T 11-10-2018 IPR000014 PAS domain AMK58_07015 cc15597144a471ec4e14dfee1cb2f606 513 SUPERFAMILY SSF55785 80 175 7.85E-9 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_07015 cc15597144a471ec4e14dfee1cb2f606 513 SUPERFAMILY SSF52540 201 444 9.7E-66 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_07015 cc15597144a471ec4e14dfee1cb2f606 513 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 415 424 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site AMK58_07015 cc15597144a471ec4e14dfee1cb2f606 513 Pfam PF00989 PAS fold 80 127 1.6E-5 T 11-10-2018 IPR013767 PAS fold GO:0006355 AMK58_07015 cc15597144a471ec4e14dfee1cb2f606 513 Gene3D G3DSA:3.30.70.260 1 79 1.6E-16 T 11-10-2018 AMK58_07015 cc15597144a471ec4e14dfee1cb2f606 513 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 288 303 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AMK58_07015 cc15597144a471ec4e14dfee1cb2f606 513 SUPERFAMILY SSF46689 459 509 4.3E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_07015 cc15597144a471ec4e14dfee1cb2f606 513 Gene3D G3DSA:1.10.8.60 373 451 1.2E-21 T 11-10-2018 AMK58_07015 cc15597144a471ec4e14dfee1cb2f606 513 Gene3D G3DSA:3.30.450.20 81 185 1.7E-14 T 11-10-2018 AMK58_12165 e440a0211187feec4768660b9b4d7623 168 Hamap MF_00163 Peptide deformylase [def]. 2 165 31.96 T 11-10-2018 IPR023635 Peptide deformylase AMK58_12165 e440a0211187feec4768660b9b4d7623 168 PRINTS PR01576 Peptide deformylase signature 92 103 7.5E-37 T 11-10-2018 IPR023635 Peptide deformylase AMK58_12165 e440a0211187feec4768660b9b4d7623 168 PRINTS PR01576 Peptide deformylase signature 123 152 7.5E-37 T 11-10-2018 IPR023635 Peptide deformylase AMK58_12165 e440a0211187feec4768660b9b4d7623 168 PRINTS PR01576 Peptide deformylase signature 33 62 7.5E-37 T 11-10-2018 IPR023635 Peptide deformylase AMK58_12165 e440a0211187feec4768660b9b4d7623 168 PRINTS PR01576 Peptide deformylase signature 104 122 7.5E-37 T 11-10-2018 IPR023635 Peptide deformylase AMK58_12165 e440a0211187feec4768660b9b4d7623 168 Pfam PF01327 Polypeptide deformylase 4 155 1.3E-56 T 11-10-2018 IPR023635 Peptide deformylase AMK58_12165 e440a0211187feec4768660b9b4d7623 168 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 4 162 1.4E-59 T 11-10-2018 IPR023635 Peptide deformylase AMK58_12165 e440a0211187feec4768660b9b4d7623 168 PIRSF PIRSF004749 1 168 5.3E-62 T 11-10-2018 IPR023635 Peptide deformylase AMK58_12165 e440a0211187feec4768660b9b4d7623 168 Gene3D G3DSA:3.90.45.10 1 168 4.7E-65 T 11-10-2018 IPR036821 Peptide deformylase superfamily AMK58_12165 e440a0211187feec4768660b9b4d7623 168 SUPERFAMILY SSF56420 2 167 8.37E-65 T 11-10-2018 IPR036821 Peptide deformylase superfamily AMK58_12065 c9b5b7a4b57605126e113d7e3729dc08 558 Gene3D G3DSA:3.40.190.10 211 297 8.1E-15 T 11-10-2018 AMK58_12065 c9b5b7a4b57605126e113d7e3729dc08 558 SUPERFAMILY SSF53850 27 554 3.26E-96 T 11-10-2018 AMK58_12065 c9b5b7a4b57605126e113d7e3729dc08 558 Gene3D G3DSA:3.10.105.10 298 524 2.5E-62 T 11-10-2018 AMK58_12065 c9b5b7a4b57605126e113d7e3729dc08 558 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 99 451 2.3E-65 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain AMK58_12065 c9b5b7a4b57605126e113d7e3729dc08 558 Gene3D G3DSA:3.90.76.10 61 177 1.9E-37 T 11-10-2018 AMK58_12065 c9b5b7a4b57605126e113d7e3729dc08 558 PIRSF PIRSF002741 2 556 3.5E-69 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMK58_11540 0e3ed4411af4886e9239eb337757e330 545 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 193 328 1.3E-19 T 11-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AMK58_11540 0e3ed4411af4886e9239eb337757e330 545 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 394 517 6.9E-25 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMK58_11540 0e3ed4411af4886e9239eb337757e330 545 Gene3D G3DSA:3.40.50.970 1 182 2.7E-67 T 11-10-2018 AMK58_11540 0e3ed4411af4886e9239eb337757e330 545 PIRSF PIRSF036565 1 545 4.1E-148 T 11-10-2018 IPR012110 Thiamine pyrophosphate (TPP)-dependent enzyme GO:0016831 AMK58_11540 0e3ed4411af4886e9239eb337757e330 545 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 1 173 3.1E-37 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AMK58_11540 0e3ed4411af4886e9239eb337757e330 545 SUPERFAMILY SSF52467 162 336 1.07E-29 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AMK58_11540 0e3ed4411af4886e9239eb337757e330 545 Gene3D G3DSA:3.40.50.970 344 545 7.8E-62 T 11-10-2018 AMK58_11540 0e3ed4411af4886e9239eb337757e330 545 Gene3D G3DSA:3.40.50.1220 183 343 5.2E-59 T 11-10-2018 AMK58_11540 0e3ed4411af4886e9239eb337757e330 545 SUPERFAMILY SSF52518 1 182 1.67E-35 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMK58_11540 0e3ed4411af4886e9239eb337757e330 545 SUPERFAMILY SSF52518 349 528 3.69E-40 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMK58_11540 0e3ed4411af4886e9239eb337757e330 545 TIGRFAM TIGR03394 indol_phenyl_DC: indolepyruvate/phenylpyruvate decarboxylase 2 535 0.0 T 11-10-2018 IPR017765 Indole-3-pyruvate decarboxylase GO:0009851|GO:0047434 KEGG: 00380+4.1.1.74|MetaCyc: PWY-5081 AMK58_25515 28f333faf566c186b8e15b22e9022dc9 381 Gene3D G3DSA:3.40.47.10 1 238 1.1E-51 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_25515 28f333faf566c186b8e15b22e9022dc9 381 SUPERFAMILY SSF53901 3 235 6.97E-51 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_25515 28f333faf566c186b8e15b22e9022dc9 381 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 4 229 3.4E-34 T 11-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal AMK58_25515 28f333faf566c186b8e15b22e9022dc9 381 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 278 342 3.7E-7 T 11-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal AMK58_25515 28f333faf566c186b8e15b22e9022dc9 381 Gene3D G3DSA:3.40.47.10 251 379 1.3E-9 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_25515 28f333faf566c186b8e15b22e9022dc9 381 SMART SM00825 Beta-ketoacyl synthase 5 372 4.5E-7 T 11-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMK58_25515 28f333faf566c186b8e15b22e9022dc9 381 SUPERFAMILY SSF53901 208 377 1.59E-22 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_05980 908aaf3f1e4c4080f75476a2b8d8580b 455 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 4 133 5.5E-41 T 11-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_05980 908aaf3f1e4c4080f75476a2b8d8580b 455 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 6 446 3.0E-186 T 11-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_05980 908aaf3f1e4c4080f75476a2b8d8580b 455 SUPERFAMILY SSF55957 363 448 7.46E-21 T 11-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_05980 908aaf3f1e4c4080f75476a2b8d8580b 455 Gene3D G3DSA:3.40.120.10 259 342 2.4E-65 T 11-10-2018 AMK58_05980 908aaf3f1e4c4080f75476a2b8d8580b 455 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 95 109 8.6E-13 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_05980 908aaf3f1e4c4080f75476a2b8d8580b 455 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 236 251 8.6E-13 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_05980 908aaf3f1e4c4080f75476a2b8d8580b 455 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 176 195 8.6E-13 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_05980 908aaf3f1e4c4080f75476a2b8d8580b 455 Gene3D G3DSA:3.40.120.10 176 359 2.4E-65 T 11-10-2018 AMK58_05980 908aaf3f1e4c4080f75476a2b8d8580b 455 Gene3D G3DSA:3.30.310.50 374 450 1.8E-22 T 11-10-2018 AMK58_05980 908aaf3f1e4c4080f75476a2b8d8580b 455 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 377 445 9.9E-15 T 11-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_05980 908aaf3f1e4c4080f75476a2b8d8580b 455 Gene3D G3DSA:3.40.120.10 3 145 2.8E-45 T 11-10-2018 AMK58_05980 908aaf3f1e4c4080f75476a2b8d8580b 455 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 2 448 45.907 T 11-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_05980 908aaf3f1e4c4080f75476a2b8d8580b 455 SUPERFAMILY SSF53738 158 259 1.41E-30 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_05980 908aaf3f1e4c4080f75476a2b8d8580b 455 SUPERFAMILY SSF53738 2 183 1.53E-47 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_05980 908aaf3f1e4c4080f75476a2b8d8580b 455 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 260 368 5.9E-34 T 11-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_05980 908aaf3f1e4c4080f75476a2b8d8580b 455 SUPERFAMILY SSF53738 260 360 2.75E-30 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_05980 908aaf3f1e4c4080f75476a2b8d8580b 455 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 96 105 - T 11-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_05980 908aaf3f1e4c4080f75476a2b8d8580b 455 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 159 256 7.1E-20 T 11-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_18970 7ac1d05f3bfcb0725117f2d3a7b21a64 666 Gene3D G3DSA:3.30.700.30 450 586 5.3E-33 T 11-10-2018 AMK58_18970 7ac1d05f3bfcb0725117f2d3a7b21a64 666 SUPERFAMILY SSF51246 331 446 6.28E-43 T 11-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AMK58_18970 7ac1d05f3bfcb0725117f2d3a7b21a64 666 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMK58_18970 7ac1d05f3bfcb0725117f2d3a7b21a64 666 Gene3D G3DSA:3.30.470.130 1 448 4.4E-206 T 11-10-2018 AMK58_18970 7ac1d05f3bfcb0725117f2d3a7b21a64 666 SMART SM00878 336 443 1.0E-61 T 11-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMK58_18970 7ac1d05f3bfcb0725117f2d3a7b21a64 666 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 153 167 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMK58_18970 7ac1d05f3bfcb0725117f2d3a7b21a64 666 Pfam PF00364 Biotin-requiring enzyme 602 664 1.4E-15 T 11-10-2018 IPR000089 Biotin/lipoyl attachment AMK58_18970 7ac1d05f3bfcb0725117f2d3a7b21a64 666 SUPERFAMILY SSF51230 587 665 5.23E-19 T 11-10-2018 IPR011053 Single hybrid motif AMK58_18970 7ac1d05f3bfcb0725117f2d3a7b21a64 666 SUPERFAMILY SSF52440 2 113 2.37E-48 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMK58_18970 7ac1d05f3bfcb0725117f2d3a7b21a64 666 Pfam PF00289 Biotin carboxylase, N-terminal domain 2 110 6.8E-44 T 11-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMK58_18970 7ac1d05f3bfcb0725117f2d3a7b21a64 666 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 322 7.9E-82 T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMK58_18970 7ac1d05f3bfcb0725117f2d3a7b21a64 666 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 622 639 - T 11-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMK58_18970 7ac1d05f3bfcb0725117f2d3a7b21a64 666 SUPERFAMILY SSF56059 83 348 2.47E-70 T 11-10-2018 AMK58_18970 7ac1d05f3bfcb0725117f2d3a7b21a64 666 Gene3D G3DSA:2.40.50.100 599 665 4.8E-21 T 11-10-2018 AMK58_18970 7ac1d05f3bfcb0725117f2d3a7b21a64 666 Pfam PF02785 Biotin carboxylase C-terminal domain 336 443 1.2E-39 T 11-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMK58_25560 a3fea8931a2cdd13fae535621ff2cada 1033 PRINTS PR00702 Acriflavin resistance protein family signature 388 412 9.8E-22 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_25560 a3fea8931a2cdd13fae535621ff2cada 1033 PRINTS PR00702 Acriflavin resistance protein family signature 441 464 9.8E-22 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_25560 a3fea8931a2cdd13fae535621ff2cada 1033 PRINTS PR00702 Acriflavin resistance protein family signature 42 60 9.8E-22 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_25560 a3fea8931a2cdd13fae535621ff2cada 1033 PRINTS PR00702 Acriflavin resistance protein family signature 542 559 9.8E-22 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_25560 a3fea8931a2cdd13fae535621ff2cada 1033 PRINTS PR00702 Acriflavin resistance protein family signature 360 381 9.8E-22 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_25560 a3fea8931a2cdd13fae535621ff2cada 1033 PRINTS PR00702 Acriflavin resistance protein family signature 466 489 9.8E-22 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_25560 a3fea8931a2cdd13fae535621ff2cada 1033 Gene3D G3DSA:3.30.2090.10 708 796 1.4E-241 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_25560 a3fea8931a2cdd13fae535621ff2cada 1033 SUPERFAMILY SSF82693 141 327 8.37E-17 T 11-10-2018 AMK58_25560 a3fea8931a2cdd13fae535621ff2cada 1033 Gene3D G3DSA:3.30.70.1430 44 804 1.4E-241 T 11-10-2018 AMK58_25560 a3fea8931a2cdd13fae535621ff2cada 1033 Gene3D G3DSA:3.30.2090.10 183 272 1.4E-241 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_25560 a3fea8931a2cdd13fae535621ff2cada 1033 SUPERFAMILY SSF82714 709 794 4.84E-18 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_25560 a3fea8931a2cdd13fae535621ff2cada 1033 Gene3D G3DSA:1.20.1640.10 14 508 1.4E-241 T 11-10-2018 AMK58_25560 a3fea8931a2cdd13fae535621ff2cada 1033 SUPERFAMILY SSF82714 189 270 2.62E-9 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_25560 a3fea8931a2cdd13fae535621ff2cada 1033 Gene3D G3DSA:1.20.1640.10 509 1009 1.4E-241 T 11-10-2018 AMK58_25560 a3fea8931a2cdd13fae535621ff2cada 1033 SUPERFAMILY SSF82693 44 136 1.31E-15 T 11-10-2018 AMK58_25560 a3fea8931a2cdd13fae535621ff2cada 1033 Gene3D G3DSA:3.30.70.1320 141 330 1.4E-241 T 11-10-2018 AMK58_25560 a3fea8931a2cdd13fae535621ff2cada 1033 Gene3D G3DSA:3.30.70.1430 557 656 1.4E-241 T 11-10-2018 AMK58_25560 a3fea8931a2cdd13fae535621ff2cada 1033 Gene3D G3DSA:3.30.70.1440 657 856 1.4E-241 T 11-10-2018 AMK58_25560 a3fea8931a2cdd13fae535621ff2cada 1033 Pfam PF00873 AcrB/AcrD/AcrF family 8 1011 4.8E-153 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_25560 a3fea8931a2cdd13fae535621ff2cada 1033 SUPERFAMILY SSF82866 299 490 8.89E-34 T 11-10-2018 AMK58_25560 a3fea8931a2cdd13fae535621ff2cada 1033 SUPERFAMILY SSF82866 792 1015 6.67E-43 T 11-10-2018 AMK58_05365 08e63ce260744a077585656861c7b097 733 SUPERFAMILY SSF56322 24 512 7.33E-118 T 11-10-2018 IPR005801 ADC synthase GO:0009058 AMK58_05365 08e63ce260744a077585656861c7b097 733 PRINTS PR00096 Glutamine amidotransferase superfamily signature 579 588 3.1E-10 T 11-10-2018 AMK58_05365 08e63ce260744a077585656861c7b097 733 PRINTS PR00096 Glutamine amidotransferase superfamily signature 696 709 3.1E-10 T 11-10-2018 AMK58_05365 08e63ce260744a077585656861c7b097 733 PRINTS PR00096 Glutamine amidotransferase superfamily signature 606 617 3.1E-10 T 11-10-2018 AMK58_05365 08e63ce260744a077585656861c7b097 733 Gene3D G3DSA:3.60.120.10 27 517 2.4E-119 T 11-10-2018 IPR005801 ADC synthase GO:0009058 AMK58_05365 08e63ce260744a077585656861c7b097 733 Pfam PF00425 chorismate binding enzyme 252 504 5.0E-63 T 11-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal AMK58_05365 08e63ce260744a077585656861c7b097 733 SUPERFAMILY SSF52317 531 720 4.79E-45 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_05365 08e63ce260744a077585656861c7b097 733 Pfam PF00117 Glutamine amidotransferase class-I 537 711 1.1E-37 T 11-10-2018 IPR017926 Glutamine amidotransferase AMK58_05365 08e63ce260744a077585656861c7b097 733 PIRSF PIRSF036934 6 733 0.0 T 11-10-2018 IPR010112 Anthranilate synthase GO:0000162|GO:0004049 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMK58_05365 08e63ce260744a077585656861c7b097 733 PRINTS PR00097 Anthranilate synthase component II signature 631 639 6.8E-24 T 11-10-2018 AMK58_05365 08e63ce260744a077585656861c7b097 733 PRINTS PR00097 Anthranilate synthase component II signature 651 663 6.8E-24 T 11-10-2018 AMK58_05365 08e63ce260744a077585656861c7b097 733 PRINTS PR00097 Anthranilate synthase component II signature 579 588 6.8E-24 T 11-10-2018 AMK58_05365 08e63ce260744a077585656861c7b097 733 PRINTS PR00097 Anthranilate synthase component II signature 606 617 6.8E-24 T 11-10-2018 AMK58_05365 08e63ce260744a077585656861c7b097 733 PRINTS PR00097 Anthranilate synthase component II signature 535 549 6.8E-24 T 11-10-2018 AMK58_05365 08e63ce260744a077585656861c7b097 733 PRINTS PR00097 Anthranilate synthase component II signature 696 709 6.8E-24 T 11-10-2018 AMK58_05365 08e63ce260744a077585656861c7b097 733 TIGRFAM TIGR01815 TrpE-clade3: anthranilate synthase 18 732 0.0 T 11-10-2018 IPR010112 Anthranilate synthase GO:0000162|GO:0004049 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMK58_05365 08e63ce260744a077585656861c7b097 733 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 535 719 3.2E-38 T 11-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMK58_05365 08e63ce260744a077585656861c7b097 733 Pfam PF04715 Anthranilate synthase component I, N terminal region 74 204 2.8E-6 T 11-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMK58_05365 08e63ce260744a077585656861c7b097 733 Gene3D G3DSA:3.40.50.880 533 722 4.4E-50 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_11380 e63adfd3315404e842bed88e8cdcd516 267 TIGRFAM TIGR00608 radc: DNA repair protein RadC 52 267 6.4E-65 T 11-10-2018 IPR001405 Uncharacterised protein family UPF0758 AMK58_11380 e63adfd3315404e842bed88e8cdcd516 267 Pfam PF04002 RadC-like JAB domain 147 265 2.9E-44 T 11-10-2018 IPR025657 RadC-like JAB domain AMK58_11380 e63adfd3315404e842bed88e8cdcd516 267 SUPERFAMILY SSF102712 158 233 4.05E-6 T 11-10-2018 AMK58_11380 e63adfd3315404e842bed88e8cdcd516 267 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 216 221 - T 11-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site AMK58_11380 e63adfd3315404e842bed88e8cdcd516 267 Gene3D G3DSA:3.40.140.10 145 267 4.0E-42 T 11-10-2018 AMK58_02545 c48538865c2810fb382999b64862c5ff 456 Gene3D G3DSA:1.10.490.10 6 158 7.6E-37 T 11-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 AMK58_02545 c48538865c2810fb382999b64862c5ff 456 Pfam PF00990 Diguanylate cyclase, GGDEF domain 298 452 2.3E-42 T 11-10-2018 IPR000160 GGDEF domain AMK58_02545 c48538865c2810fb382999b64862c5ff 456 SUPERFAMILY SSF55073 301 455 8.63E-46 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_02545 c48538865c2810fb382999b64862c5ff 456 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 293 455 6.7E-47 T 11-10-2018 IPR000160 GGDEF domain AMK58_02545 c48538865c2810fb382999b64862c5ff 456 SMART SM00267 285 456 3.0E-50 T 11-10-2018 IPR000160 GGDEF domain AMK58_02545 c48538865c2810fb382999b64862c5ff 456 SUPERFAMILY SSF46458 35 155 1.73E-16 T 11-10-2018 IPR009050 Globin-like superfamily AMK58_02545 c48538865c2810fb382999b64862c5ff 456 Gene3D G3DSA:3.30.70.270 291 456 1.3E-53 T 11-10-2018 AMK58_02545 c48538865c2810fb382999b64862c5ff 456 Pfam PF11563 Protoglobin 20 160 2.2E-11 T 11-10-2018 AMK58_15650 69c702353c3e2b391d510ffa2462a4cf 348 Gene3D G3DSA:3.40.50.10330 64 173 3.3E-6 T 11-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 AMK58_15650 69c702353c3e2b391d510ffa2462a4cf 348 SUPERFAMILY SSF111331 86 171 1.98E-7 T 11-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily AMK58_15650 69c702353c3e2b391d510ffa2462a4cf 348 Pfam PF01513 ATP-NAD kinase 5 282 1.2E-23 T 11-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 AMK58_15650 69c702353c3e2b391d510ffa2462a4cf 348 PIRSF PIRSF018567 1 346 9.4E-124 T 11-10-2018 IPR011391 Acetoin catabolism kinase AcoX AMK58_10905 a801f6fcfd8f9f4f0649b66322dfaa8f 1239 SUPERFAMILY SSF51998 197 916 2.04E-125 T 11-10-2018 AMK58_10905 a801f6fcfd8f9f4f0649b66322dfaa8f 1239 PRINTS PR01183 Ribonucleotide reductase large chain signature 535 557 5.4E-5 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMK58_10905 a801f6fcfd8f9f4f0649b66322dfaa8f 1239 PRINTS PR01183 Ribonucleotide reductase large chain signature 275 294 5.4E-5 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMK58_10905 a801f6fcfd8f9f4f0649b66322dfaa8f 1239 SUPERFAMILY SSF75625 296 385 4.71E-14 T 11-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_10905 a801f6fcfd8f9f4f0649b66322dfaa8f 1239 Pfam PF01709 Transcriptional regulator 296 364 8.4E-8 T 11-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_10905 a801f6fcfd8f9f4f0649b66322dfaa8f 1239 Pfam PF02867 Ribonucleotide reductase, barrel domain 803 905 1.6E-17 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMK58_10905 a801f6fcfd8f9f4f0649b66322dfaa8f 1239 TIGRFAM TIGR02504 NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 131 744 5.6E-147 T 11-10-2018 IPR013344 Ribonucleotide reductase, adenosylcobalamin-dependent GO:0000166|GO:0004748|GO:0031419|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMK58_10905 a801f6fcfd8f9f4f0649b66322dfaa8f 1239 Pfam PF02867 Ribonucleotide reductase, barrel domain 198 743 1.5E-105 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMK58_10905 a801f6fcfd8f9f4f0649b66322dfaa8f 1239 Gene3D G3DSA:3.20.70.20 798 920 9.4E-30 T 11-10-2018 AMK58_10905 a801f6fcfd8f9f4f0649b66322dfaa8f 1239 Gene3D G3DSA:3.20.70.20 89 350 1.0E-54 T 11-10-2018 AMK58_10905 a801f6fcfd8f9f4f0649b66322dfaa8f 1239 Gene3D G3DSA:3.20.70.20 365 770 2.9E-98 T 11-10-2018 AMK58_10905 a801f6fcfd8f9f4f0649b66322dfaa8f 1239 Pfam PF08471 Class II vitamin B12-dependent ribonucleotide reductase 31 147 4.3E-42 T 11-10-2018 IPR013678 Ribonucleotide reductase class II vitamin B12-dependent, N-terminal domain GO:0004748|GO:0050897|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMK58_09305 7b8773601b199115ba823f0ea5dfec0f 104 Gene3D G3DSA:1.10.20.30 1 44 1.7E-6 T 11-10-2018 AMK58_09305 7b8773601b199115ba823f0ea5dfec0f 104 Pfam PF05164 Cell division protein ZapA 4 100 3.0E-17 T 11-10-2018 IPR007838 Cell division protein ZapA-like AMK58_09305 7b8773601b199115ba823f0ea5dfec0f 104 SUPERFAMILY SSF102829 3 65 3.4E-15 T 11-10-2018 IPR036192 Cell division protein ZapA-like superfamily AMK58_28630 efcc6f2efaae6102119ad5775eba498d 77 SUPERFAMILY SSF64307 7 67 6.02E-6 T 11-10-2018 IPR036868 TusA-like domain superfamily AMK58_28630 efcc6f2efaae6102119ad5775eba498d 77 Pfam PF10006 Uncharacterized conserved protein (DUF2249) 8 70 2.2E-13 T 11-10-2018 IPR018720 Domain of unknown function DUF2249 AMK58_06450 fd859373b0b2a71e9156a935ae0fca6e 275 Pfam PF00793 DAHP synthetase I family 12 259 1.4E-70 T 11-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AMK58_06450 fd859373b0b2a71e9156a935ae0fca6e 275 SUPERFAMILY SSF51569 5 274 8.06E-107 T 11-10-2018 AMK58_06450 fd859373b0b2a71e9156a935ae0fca6e 275 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 14 275 52.111 T 11-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AMK58_06450 fd859373b0b2a71e9156a935ae0fca6e 275 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 19 274 7.3E-125 T 11-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AMK58_06450 fd859373b0b2a71e9156a935ae0fca6e 275 Gene3D G3DSA:3.20.20.70 2 275 1.3E-100 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_04950 6b2227e7d9b1a43b926e55030bce8313 209 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 59 77 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_04950 6b2227e7d9b1a43b926e55030bce8313 209 PRINTS PR00313 NodO calcium binding signature 72 80 4.9E-12 T 11-10-2018 AMK58_04950 6b2227e7d9b1a43b926e55030bce8313 209 PRINTS PR00313 NodO calcium binding signature 117 126 4.9E-12 T 11-10-2018 AMK58_04950 6b2227e7d9b1a43b926e55030bce8313 209 PRINTS PR00313 NodO calcium binding signature 90 98 4.9E-12 T 11-10-2018 AMK58_04950 6b2227e7d9b1a43b926e55030bce8313 209 PRINTS PR00313 NodO calcium binding signature 42 53 4.9E-12 T 11-10-2018 AMK58_04950 6b2227e7d9b1a43b926e55030bce8313 209 SUPERFAMILY SSF51120 6 85 2.22E-19 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_04950 6b2227e7d9b1a43b926e55030bce8313 209 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 77 95 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_04950 6b2227e7d9b1a43b926e55030bce8313 209 Gene3D G3DSA:2.150.10.10 2 74 3.1E-16 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_04950 6b2227e7d9b1a43b926e55030bce8313 209 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 47 61 0.0026 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_04950 6b2227e7d9b1a43b926e55030bce8313 209 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 80 97 0.0017 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_04950 6b2227e7d9b1a43b926e55030bce8313 209 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 63 79 0.0028 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_04950 6b2227e7d9b1a43b926e55030bce8313 209 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 107 124 0.035 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_04950 6b2227e7d9b1a43b926e55030bce8313 209 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 27 43 0.0024 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_04950 6b2227e7d9b1a43b926e55030bce8313 209 SUPERFAMILY SSF51120 66 197 4.45E-23 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_04950 6b2227e7d9b1a43b926e55030bce8313 209 Gene3D G3DSA:2.150.10.10 75 197 5.6E-20 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_11025 65a7a9cc539316a57e1553817819f4a8 587 TIGRFAM TIGR03648 Na_symport_lg: probable sodium:solute symporter, VC_2705 subfamily 7 578 2.5E-256 T 11-10-2018 IPR019899 Sodium/solute symporter, VC2705 subfamily AMK58_11025 65a7a9cc539316a57e1553817819f4a8 587 Pfam PF00474 Sodium:solute symporter family 33 298 9.0E-34 T 11-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 AMK58_11025 65a7a9cc539316a57e1553817819f4a8 587 Pfam PF00474 Sodium:solute symporter family 389 506 9.2E-16 T 11-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 AMK58_11025 65a7a9cc539316a57e1553817819f4a8 587 Gene3D G3DSA:1.20.1730.10 352 564 1.5E-22 T 11-10-2018 IPR038377 Sodium/glucose symporter superfamily AMK58_11025 65a7a9cc539316a57e1553817819f4a8 587 Gene3D G3DSA:1.20.1730.10 22 328 4.3E-39 T 11-10-2018 IPR038377 Sodium/glucose symporter superfamily AMK58_23970 080ae564866317f1b79e8a49f60daf98 358 SUPERFAMILY SSF50331 236 358 9.96E-27 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMK58_23970 080ae564866317f1b79e8a49f60daf98 358 Gene3D G3DSA:2.40.50.940 222 351 1.8E-30 T 11-10-2018 AMK58_23970 080ae564866317f1b79e8a49f60daf98 358 Pfam PF08402 TOBE domain 281 351 5.3E-11 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMK58_23970 080ae564866317f1b79e8a49f60daf98 358 Gene3D G3DSA:2.40.50.140 288 343 1.8E-30 T 11-10-2018 AMK58_23970 080ae564866317f1b79e8a49f60daf98 358 SUPERFAMILY SSF52540 4 244 1.01E-84 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_23970 080ae564866317f1b79e8a49f60daf98 358 Gene3D G3DSA:3.40.50.300 4 221 3.0E-64 T 11-10-2018 AMK58_23970 080ae564866317f1b79e8a49f60daf98 358 SMART SM00382 28 211 7.7E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_23970 080ae564866317f1b79e8a49f60daf98 358 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_23970 080ae564866317f1b79e8a49f60daf98 358 Pfam PF00005 ABC transporter 20 161 1.8E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_18165 b8bea30a69581d19d2a31beee9e7ae10 562 SUPERFAMILY SSF111326 9 561 5.1E-259 T 11-10-2018 IPR036190 Urocanase superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AMK58_18165 b8bea30a69581d19d2a31beee9e7ae10 562 Gene3D G3DSA:3.40.50.10730 143 355 1.9E-255 T 11-10-2018 IPR038364 Urocanase, central domain superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AMK58_18165 b8bea30a69581d19d2a31beee9e7ae10 562 Gene3D G3DSA:3.40.1770.10 18 548 1.9E-255 T 11-10-2018 AMK58_18165 b8bea30a69581d19d2a31beee9e7ae10 562 PIRSF PIRSF001423 2 562 1.1E-293 T 11-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AMK58_18165 b8bea30a69581d19d2a31beee9e7ae10 562 Pfam PF17391 Urocanase N-terminal domain 13 139 2.0E-62 T 11-10-2018 IPR035400 Urocanase, N-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AMK58_18165 b8bea30a69581d19d2a31beee9e7ae10 562 Hamap MF_00577 Urocanate hydratase [hutU]. 2 562 50.589 T 11-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AMK58_18165 b8bea30a69581d19d2a31beee9e7ae10 562 TIGRFAM TIGR01228 hutU: urocanate hydratase 12 560 4.5E-293 T 11-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AMK58_18165 b8bea30a69581d19d2a31beee9e7ae10 562 Pfam PF01175 Urocanase Rossmann-like domain 142 355 1.1E-83 T 11-10-2018 IPR035085 Urocanase, Rossmann-like domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AMK58_18165 b8bea30a69581d19d2a31beee9e7ae10 562 Pfam PF17392 Urocanase C-terminal domain 358 552 1.1E-92 T 11-10-2018 IPR035401 Urocanase, C-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AMK58_18165 b8bea30a69581d19d2a31beee9e7ae10 562 ProSitePatterns PS01233 Urocanase signature. 448 463 - T 11-10-2018 IPR023636 Urocanase conserved site GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AMK58_19495 ba76acfab230329e028426c2413877b3 720 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 161 184 - T 11-10-2018 IPR025505 FHIPEP conserved site AMK58_19495 ba76acfab230329e028426c2413877b3 720 Gene3D G3DSA:1.10.8.540 531 619 3.2E-25 T 11-10-2018 AMK58_19495 ba76acfab230329e028426c2413877b3 720 Gene3D G3DSA:3.40.30.60 385 530 1.6E-48 T 11-10-2018 AMK58_19495 ba76acfab230329e028426c2413877b3 720 Gene3D G3DSA:1.10.490.80 622 720 2.9E-15 T 11-10-2018 AMK58_19495 ba76acfab230329e028426c2413877b3 720 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 205 222 1.1E-53 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AMK58_19495 ba76acfab230329e028426c2413877b3 720 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 52 65 1.1E-53 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AMK58_19495 ba76acfab230329e028426c2413877b3 720 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 89 108 1.1E-53 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AMK58_19495 ba76acfab230329e028426c2413877b3 720 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 256 270 1.1E-53 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AMK58_19495 ba76acfab230329e028426c2413877b3 720 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 156 172 1.1E-53 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AMK58_19495 ba76acfab230329e028426c2413877b3 720 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 175 193 1.1E-53 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AMK58_19495 ba76acfab230329e028426c2413877b3 720 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 35 720 3.2E-263 T 11-10-2018 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 AMK58_19495 ba76acfab230329e028426c2413877b3 720 Pfam PF00771 FHIPEP family 45 712 2.7E-252 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AMK58_19495 ba76acfab230329e028426c2413877b3 720 PIRSF PIRSF005419 20 720 8.7E-227 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AMK58_06780 41e17f88fdd21cdf6f5f27863495f7fa 363 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 149 177 - T 11-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AMK58_06780 41e17f88fdd21cdf6f5f27863495f7fa 363 PIRSF PIRSF000112 1 359 6.0E-96 T 11-10-2018 IPR016205 Glycerol dehydrogenase GO:0016614|GO:0046872|GO:0055114 KEGG: 00564+1.1.1.261|MetaCyc: PWY-6349 AMK58_06780 41e17f88fdd21cdf6f5f27863495f7fa 363 Gene3D G3DSA:1.20.1090.10 159 363 2.8E-78 T 11-10-2018 AMK58_06780 41e17f88fdd21cdf6f5f27863495f7fa 363 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 240 260 - T 11-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AMK58_06780 41e17f88fdd21cdf6f5f27863495f7fa 363 Pfam PF00465 Iron-containing alcohol dehydrogenase 8 346 3.8E-65 T 11-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 AMK58_06780 41e17f88fdd21cdf6f5f27863495f7fa 363 Gene3D G3DSA:3.40.50.1970 4 158 2.9E-43 T 11-10-2018 AMK58_06780 41e17f88fdd21cdf6f5f27863495f7fa 363 SUPERFAMILY SSF56796 4 355 6.54E-87 T 11-10-2018 AMK58_16800 8cdd3ee465a27f005a35896ae136208d 360 Gene3D G3DSA:3.20.20.300 15 352 3.3E-87 T 11-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 AMK58_16800 8cdd3ee465a27f005a35896ae136208d 360 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 50 317 2.9E-47 T 11-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMK58_16800 8cdd3ee465a27f005a35896ae136208d 360 SUPERFAMILY SSF51445 26 311 8.53E-63 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily AMK58_22010 c9f8eeadaf751e55935a7dd52b74d35d 505 Gene3D G3DSA:3.40.50.720 167 295 2.4E-14 T 11-10-2018 AMK58_22010 c9f8eeadaf751e55935a7dd52b74d35d 505 SUPERFAMILY SSF51735 170 268 9.97E-5 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_22010 c9f8eeadaf751e55935a7dd52b74d35d 505 Pfam PF13727 CoA-binding domain 82 275 3.7E-23 T 11-10-2018 AMK58_22010 c9f8eeadaf751e55935a7dd52b74d35d 505 Pfam PF02397 Bacterial sugar transferase 311 497 1.7E-65 T 11-10-2018 IPR003362 Bacterial sugar transferase AMK58_22010 c9f8eeadaf751e55935a7dd52b74d35d 505 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 66 505 7.5E-126 T 11-10-2018 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase AMK58_22010 c9f8eeadaf751e55935a7dd52b74d35d 505 TIGRFAM TIGR03023 WcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase 66 505 3.4E-131 T 11-10-2018 IPR017473 Undecaprenyl-phosphate glucose phosphotransferase, WcaJ MetaCyc: PWY-6655|MetaCyc: PWY-6658 AMK58_27775 4f1baab42ef3014d571be004812d2315 298 Gene3D G3DSA:3.20.20.60 7 297 3.9E-84 T 11-10-2018 AMK58_27775 4f1baab42ef3014d571be004812d2315 298 SUPERFAMILY SSF51621 16 246 4.54E-59 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMK58_27775 4f1baab42ef3014d571be004812d2315 298 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 18 235 7.8E-40 T 11-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 AMK58_27775 4f1baab42ef3014d571be004812d2315 298 PIRSF PIRSF015582 2 298 7.9E-73 T 11-10-2018 IPR011206 Citrate lyase beta subunit-like AMK58_24910 4f1baab42ef3014d571be004812d2315 298 Gene3D G3DSA:3.20.20.60 7 297 3.9E-84 T 11-10-2018 AMK58_24910 4f1baab42ef3014d571be004812d2315 298 SUPERFAMILY SSF51621 16 246 4.54E-59 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMK58_24910 4f1baab42ef3014d571be004812d2315 298 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 18 235 7.8E-40 T 11-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 AMK58_24910 4f1baab42ef3014d571be004812d2315 298 PIRSF PIRSF015582 2 298 7.9E-73 T 11-10-2018 IPR011206 Citrate lyase beta subunit-like AMK58_00090 ddfed777f7ad8b2d7612ce583b321e8a 370 Gene3D G3DSA:3.40.50.2300 35 348 2.3E-110 T 11-10-2018 AMK58_00090 ddfed777f7ad8b2d7612ce583b321e8a 370 SUPERFAMILY SSF53822 27 369 7.71E-95 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMK58_00090 ddfed777f7ad8b2d7612ce583b321e8a 370 Gene3D G3DSA:3.40.50.2300 146 274 2.3E-110 T 11-10-2018 AMK58_00090 ddfed777f7ad8b2d7612ce583b321e8a 370 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 28 44 1.2E-32 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMK58_00090 ddfed777f7ad8b2d7612ce583b321e8a 370 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 331 346 1.2E-32 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMK58_00090 ddfed777f7ad8b2d7612ce583b321e8a 370 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 50 66 1.2E-32 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMK58_00090 ddfed777f7ad8b2d7612ce583b321e8a 370 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 90 100 1.2E-32 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMK58_00090 ddfed777f7ad8b2d7612ce583b321e8a 370 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 256 274 1.2E-32 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMK58_00090 ddfed777f7ad8b2d7612ce583b321e8a 370 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 279 292 1.2E-32 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMK58_00090 ddfed777f7ad8b2d7612ce583b321e8a 370 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 69 87 1.2E-32 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMK58_00090 ddfed777f7ad8b2d7612ce583b321e8a 370 Pfam PF13458 Periplasmic binding protein 28 364 4.2E-60 T 11-10-2018 IPR028081 Leucine-binding protein domain AMK58_18895 7af2c08349a806ea2ff41baed4b9680c 478 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 451 471 7.5E-10 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMK58_18895 7af2c08349a806ea2ff41baed4b9680c 478 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 434 451 7.5E-10 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMK58_18895 7af2c08349a806ea2ff41baed4b9680c 478 SUPERFAMILY SSF52540 157 402 1.69E-69 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_18895 7af2c08349a806ea2ff41baed4b9680c 478 SUPERFAMILY SSF46689 371 470 2.26E-12 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_18895 7af2c08349a806ea2ff41baed4b9680c 478 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 181 194 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AMK58_18895 7af2c08349a806ea2ff41baed4b9680c 478 Gene3D G3DSA:1.10.10.60 412 472 2.1E-15 T 11-10-2018 AMK58_18895 7af2c08349a806ea2ff41baed4b9680c 478 Gene3D G3DSA:3.40.50.300 142 328 2.8E-65 T 11-10-2018 AMK58_18895 7af2c08349a806ea2ff41baed4b9680c 478 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 371 380 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site AMK58_18895 7af2c08349a806ea2ff41baed4b9680c 478 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 244 259 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AMK58_18895 7af2c08349a806ea2ff41baed4b9680c 478 Gene3D G3DSA:1.10.8.60 329 406 4.4E-19 T 11-10-2018 AMK58_18895 7af2c08349a806ea2ff41baed4b9680c 478 Pfam PF08448 PAS fold 27 115 6.1E-7 T 11-10-2018 IPR013656 PAS fold-4 AMK58_18895 7af2c08349a806ea2ff41baed4b9680c 478 SMART SM00382 177 325 5.8E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_18895 7af2c08349a806ea2ff41baed4b9680c 478 Pfam PF02954 Bacterial regulatory protein, Fis family 428 467 3.6E-13 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMK58_18895 7af2c08349a806ea2ff41baed4b9680c 478 SUPERFAMILY SSF55785 18 114 8.19E-12 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_18895 7af2c08349a806ea2ff41baed4b9680c 478 Gene3D G3DSA:3.30.450.20 7 115 9.8E-11 T 11-10-2018 AMK58_18895 7af2c08349a806ea2ff41baed4b9680c 478 Pfam PF00158 Sigma-54 interaction domain 157 325 2.8E-67 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AMK58_01720 fc015a7ae5b613df85715248a0a389e4 257 Pfam PF02557 D-alanyl-D-alanine carboxypeptidase 32 99 3.0E-5 T 11-10-2018 IPR003709 Peptidase M15B GO:0006508|GO:0008233 AMK58_01720 fc015a7ae5b613df85715248a0a389e4 257 SUPERFAMILY SSF55166 26 140 5.49E-11 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AMK58_01720 fc015a7ae5b613df85715248a0a389e4 257 Gene3D G3DSA:3.30.1380.10 10 113 7.0E-6 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AMK58_04875 ac36991d52bdb0541fd8feffdebc7015 1005 SUPERFAMILY SSF81593 833 980 3.06E-29 T 11-10-2018 AMK58_04875 ac36991d52bdb0541fd8feffdebc7015 1005 Pfam PF08335 GlnD PII-uridylyltransferase 326 467 2.6E-37 T 11-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 AMK58_04875 ac36991d52bdb0541fd8feffdebc7015 1005 Pfam PF08335 GlnD PII-uridylyltransferase 850 934 1.3E-10 T 11-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 AMK58_04875 ac36991d52bdb0541fd8feffdebc7015 1005 Hamap MF_00802 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme [glnE]. 56 988 17.085 T 11-10-2018 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme GO:0008882 AMK58_04875 ac36991d52bdb0541fd8feffdebc7015 1005 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 62 305 5.8E-63 T 11-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 AMK58_04875 ac36991d52bdb0541fd8feffdebc7015 1005 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 579 822 3.6E-60 T 11-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 AMK58_04875 ac36991d52bdb0541fd8feffdebc7015 1005 SUPERFAMILY SSF81301 550 830 2.78E-71 T 11-10-2018 AMK58_04875 ac36991d52bdb0541fd8feffdebc7015 1005 Gene3D G3DSA:1.20.120.330 835 989 6.7E-25 T 11-10-2018 AMK58_04875 ac36991d52bdb0541fd8feffdebc7015 1005 Gene3D G3DSA:1.20.120.330 313 470 5.0E-48 T 11-10-2018 AMK58_04875 ac36991d52bdb0541fd8feffdebc7015 1005 SUPERFAMILY SSF81301 49 314 5.32E-66 T 11-10-2018 AMK58_04875 ac36991d52bdb0541fd8feffdebc7015 1005 SUPERFAMILY SSF81593 315 467 4.39E-38 T 11-10-2018 AMK58_04875 ac36991d52bdb0541fd8feffdebc7015 1005 Gene3D G3DSA:3.30.460.100 68 308 2.3E-63 T 11-10-2018 AMK58_04875 ac36991d52bdb0541fd8feffdebc7015 1005 Gene3D G3DSA:3.30.460.100 587 829 1.9E-62 T 11-10-2018 AMK58_21590 77a1dc0a3c4169870f9da5a46c7d1e84 482 SUPERFAMILY SSF53335 79 274 2.46E-44 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_21590 77a1dc0a3c4169870f9da5a46c7d1e84 482 PRINTS PR00996 Glutamate methyltransferase family signature 220 234 5.3E-31 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMK58_21590 77a1dc0a3c4169870f9da5a46c7d1e84 482 PRINTS PR00996 Glutamate methyltransferase family signature 148 164 5.3E-31 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMK58_21590 77a1dc0a3c4169870f9da5a46c7d1e84 482 PRINTS PR00996 Glutamate methyltransferase family signature 239 262 5.3E-31 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMK58_21590 77a1dc0a3c4169870f9da5a46c7d1e84 482 PRINTS PR00996 Glutamate methyltransferase family signature 32 45 5.3E-31 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMK58_21590 77a1dc0a3c4169870f9da5a46c7d1e84 482 PRINTS PR00996 Glutamate methyltransferase family signature 112 132 5.3E-31 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMK58_21590 77a1dc0a3c4169870f9da5a46c7d1e84 482 PRINTS PR00996 Glutamate methyltransferase family signature 72 84 5.3E-31 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMK58_21590 77a1dc0a3c4169870f9da5a46c7d1e84 482 Gene3D G3DSA:1.25.40.10 362 448 3.6E-7 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_21590 77a1dc0a3c4169870f9da5a46c7d1e84 482 SMART SM00138 10 280 1.0E-57 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMK58_21590 77a1dc0a3c4169870f9da5a46c7d1e84 482 Gene3D G3DSA:3.40.50.150 78 283 7.2E-53 T 11-10-2018 AMK58_21590 77a1dc0a3c4169870f9da5a46c7d1e84 482 SUPERFAMILY SSF48452 364 445 2.46E-6 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_21590 77a1dc0a3c4169870f9da5a46c7d1e84 482 SUPERFAMILY SSF47757 8 78 1.19E-6 T 11-10-2018 AMK58_21590 77a1dc0a3c4169870f9da5a46c7d1e84 482 Pfam PF01739 CheR methyltransferase, SAM binding domain 80 274 1.9E-44 T 11-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal AMK58_19555 c685d010ecdd23820e85e381eddd928e 281 Pfam PF03705 CheR methyltransferase, all-alpha domain 4 55 6.3E-9 T 11-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal AMK58_19555 c685d010ecdd23820e85e381eddd928e 281 SMART SM00138 3 267 3.2E-116 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMK58_19555 c685d010ecdd23820e85e381eddd928e 281 Gene3D G3DSA:1.10.155.10 1 69 2.3E-6 T 11-10-2018 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily AMK58_19555 c685d010ecdd23820e85e381eddd928e 281 PRINTS PR00996 Glutamate methyltransferase family signature 25 38 7.2E-39 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMK58_19555 c685d010ecdd23820e85e381eddd928e 281 PRINTS PR00996 Glutamate methyltransferase family signature 104 124 7.2E-39 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMK58_19555 c685d010ecdd23820e85e381eddd928e 281 PRINTS PR00996 Glutamate methyltransferase family signature 226 249 7.2E-39 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMK58_19555 c685d010ecdd23820e85e381eddd928e 281 PRINTS PR00996 Glutamate methyltransferase family signature 139 155 7.2E-39 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMK58_19555 c685d010ecdd23820e85e381eddd928e 281 PRINTS PR00996 Glutamate methyltransferase family signature 207 221 7.2E-39 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMK58_19555 c685d010ecdd23820e85e381eddd928e 281 PRINTS PR00996 Glutamate methyltransferase family signature 64 76 7.2E-39 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMK58_19555 c685d010ecdd23820e85e381eddd928e 281 Gene3D G3DSA:3.40.50.150 70 268 3.9E-58 T 11-10-2018 AMK58_19555 c685d010ecdd23820e85e381eddd928e 281 Pfam PF01739 CheR methyltransferase, SAM binding domain 71 263 8.9E-64 T 11-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal AMK58_19555 c685d010ecdd23820e85e381eddd928e 281 SUPERFAMILY SSF53335 71 264 8.61E-50 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_19555 c685d010ecdd23820e85e381eddd928e 281 SUPERFAMILY SSF47757 4 70 3.79E-13 T 11-10-2018 AMK58_22820 6eb1576d52311ebcecc3f89568de4834 130 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 56 127 2.7E-7 T 11-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 AMK58_22820 6eb1576d52311ebcecc3f89568de4834 130 Gene3D G3DSA:3.10.50.30 50 130 2.7E-14 T 11-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 AMK58_22820 6eb1576d52311ebcecc3f89568de4834 130 PIRSF PIRSF006092 25 130 3.1E-9 T 11-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 AMK58_22820 6eb1576d52311ebcecc3f89568de4834 130 SUPERFAMILY SSF54534 54 127 2.62E-8 T 11-10-2018 AMK58_12845 ad2c0474dfdbb55aba6c08a22761ec1f 916 SMART SM00958 228 345 5.3E-73 T 11-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 AMK58_12845 ad2c0474dfdbb55aba6c08a22761ec1f 916 SUPERFAMILY SSF81886 613 904 4.05E-80 T 11-10-2018 IPR036266 SecA, Wing/Scaffold superfamily AMK58_12845 ad2c0474dfdbb55aba6c08a22761ec1f 916 Pfam PF02810 SEC-C motif 896 914 1.8E-9 T 11-10-2018 IPR004027 SEC-C motif AMK58_12845 ad2c0474dfdbb55aba6c08a22761ec1f 916 Gene3D G3DSA:1.10.3060.10 614 825 1.1E-73 T 11-10-2018 AMK58_12845 ad2c0474dfdbb55aba6c08a22761ec1f 916 SUPERFAMILY SSF52540 7 402 1.77E-83 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_12845 ad2c0474dfdbb55aba6c08a22761ec1f 916 Gene3D G3DSA:3.90.1440.10 229 355 6.6E-179 T 11-10-2018 AMK58_12845 ad2c0474dfdbb55aba6c08a22761ec1f 916 Pfam PF01043 SecA preprotein cross-linking domain 232 345 7.3E-39 T 11-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 AMK58_12845 ad2c0474dfdbb55aba6c08a22761ec1f 916 Gene3D G3DSA:3.40.50.300 22 402 6.6E-179 T 11-10-2018 AMK58_12845 ad2c0474dfdbb55aba6c08a22761ec1f 916 Gene3D G3DSA:3.40.50.300 404 612 2.1E-88 T 11-10-2018 AMK58_12845 ad2c0474dfdbb55aba6c08a22761ec1f 916 SUPERFAMILY SSF81767 227 355 5.36E-43 T 11-10-2018 IPR036670 SecA, preprotein cross-linking domain superfamily GO:0016020|GO:0017038 AMK58_12845 ad2c0474dfdbb55aba6c08a22761ec1f 916 Pfam PF07517 SecA DEAD-like domain 7 388 4.9E-133 T 11-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 AMK58_12845 ad2c0474dfdbb55aba6c08a22761ec1f 916 Hamap MF_01382 Protein translocase subunit SecA [secA]. 5 824 20.27 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMK58_12845 ad2c0474dfdbb55aba6c08a22761ec1f 916 SMART SM00957 6 389 1.4E-301 T 11-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 AMK58_12845 ad2c0474dfdbb55aba6c08a22761ec1f 916 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 28 809 0.0 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMK58_12845 ad2c0474dfdbb55aba6c08a22761ec1f 916 PRINTS PR00906 SecA protein signature 170 190 9.1E-70 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMK58_12845 ad2c0474dfdbb55aba6c08a22761ec1f 916 PRINTS PR00906 SecA protein signature 326 348 9.1E-70 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMK58_12845 ad2c0474dfdbb55aba6c08a22761ec1f 916 PRINTS PR00906 SecA protein signature 63 87 9.1E-70 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMK58_12845 ad2c0474dfdbb55aba6c08a22761ec1f 916 PRINTS PR00906 SecA protein signature 363 380 9.1E-70 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMK58_12845 ad2c0474dfdbb55aba6c08a22761ec1f 916 PRINTS PR00906 SecA protein signature 400 413 9.1E-70 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMK58_12845 ad2c0474dfdbb55aba6c08a22761ec1f 916 PRINTS PR00906 SecA protein signature 101 115 9.1E-70 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMK58_12845 ad2c0474dfdbb55aba6c08a22761ec1f 916 PRINTS PR00906 SecA protein signature 117 127 9.1E-70 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMK58_12845 ad2c0474dfdbb55aba6c08a22761ec1f 916 Pfam PF07516 SecA Wing and Scaffold domain 611 821 2.0E-67 T 11-10-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 AMK58_12845 ad2c0474dfdbb55aba6c08a22761ec1f 916 ProSitePatterns PS01312 SecA family signature. 487 502 - T 11-10-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 AMK58_12845 ad2c0474dfdbb55aba6c08a22761ec1f 916 SUPERFAMILY SSF52540 403 611 8.8E-57 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_12845 ad2c0474dfdbb55aba6c08a22761ec1f 916 Gene3D G3DSA:3.10.450.50 875 915 2.0E-6 T 11-10-2018 AMK58_12505 b4bdd155f2e6361b14917a4a11190676 161 SMART SM00116 15 67 2.4E-4 T 11-10-2018 IPR000644 CBS domain AMK58_12505 b4bdd155f2e6361b14917a4a11190676 161 SMART SM00116 85 136 0.038 T 11-10-2018 IPR000644 CBS domain AMK58_12505 b4bdd155f2e6361b14917a4a11190676 161 Gene3D G3DSA:3.10.580.10 3 152 1.0E-34 T 11-10-2018 AMK58_12505 b4bdd155f2e6361b14917a4a11190676 161 SUPERFAMILY SSF54631 8 147 2.56E-26 T 11-10-2018 AMK58_12505 b4bdd155f2e6361b14917a4a11190676 161 Pfam PF00571 CBS domain 79 134 8.7E-11 T 11-10-2018 IPR000644 CBS domain AMK58_12505 b4bdd155f2e6361b14917a4a11190676 161 Pfam PF00571 CBS domain 15 65 5.3E-7 T 11-10-2018 IPR000644 CBS domain AMK58_08675 1885eb46993b4d077f7fa54c306846a0 435 SUPERFAMILY SSF141571 39 128 2.22E-23 T 11-10-2018 AMK58_08675 1885eb46993b4d077f7fa54c306846a0 435 Gene3D G3DSA:2.160.20.80 30 135 1.2E-24 T 11-10-2018 AMK58_08675 1885eb46993b4d077f7fa54c306846a0 435 Gene3D G3DSA:2.160.20.80 255 372 4.5E-28 T 11-10-2018 AMK58_08675 1885eb46993b4d077f7fa54c306846a0 435 SUPERFAMILY SSF141571 283 429 1.1E-34 T 11-10-2018 AMK58_08675 1885eb46993b4d077f7fa54c306846a0 435 SUPERFAMILY SSF141571 170 275 1.83E-23 T 11-10-2018 AMK58_08675 1885eb46993b4d077f7fa54c306846a0 435 Pfam PF00805 Pentapeptide repeats (8 copies) 90 124 8.9E-10 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_08675 1885eb46993b4d077f7fa54c306846a0 435 Pfam PF00805 Pentapeptide repeats (8 copies) 171 209 6.1E-12 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_08675 1885eb46993b4d077f7fa54c306846a0 435 Pfam PF00805 Pentapeptide repeats (8 copies) 321 358 9.2E-12 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_08675 1885eb46993b4d077f7fa54c306846a0 435 Pfam PF00805 Pentapeptide repeats (8 copies) 380 417 9.0E-11 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_08675 1885eb46993b4d077f7fa54c306846a0 435 Pfam PF00805 Pentapeptide repeats (8 copies) 45 84 1.9E-9 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_08675 1885eb46993b4d077f7fa54c306846a0 435 Gene3D G3DSA:2.160.20.80 142 254 1.6E-23 T 11-10-2018 AMK58_08675 1885eb46993b4d077f7fa54c306846a0 435 Gene3D G3DSA:2.160.20.80 376 431 1.3E-13 T 11-10-2018 AMK58_07210 17e021d01ba1ca5dbdd25c4e62fe832b 107 ProDom PD339292 LIPID A SYNTHASE LIPID-A-DISACCHARIDE TRANSFERASE GLYCOSYLTRANSFERASE BIOSYNTHESIS N-TERMINAL BIOSYNTHESIS SYNTHESIS 19 94 2.0E-25 T 11-10-2018 IPR011499 Lipid A biosynthesis, N-terminal GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 AMK58_07210 17e021d01ba1ca5dbdd25c4e62fe832b 107 PIRSF PIRSF028440 1 104 1.5E-37 T 11-10-2018 IPR014546 Uncharacterised conserved protein, lipid A biosynthesis AMK58_07210 17e021d01ba1ca5dbdd25c4e62fe832b 107 SMART SM01259 22 93 3.5E-42 T 11-10-2018 IPR011499 Lipid A biosynthesis, N-terminal GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 AMK58_07210 17e021d01ba1ca5dbdd25c4e62fe832b 107 Pfam PF07578 Lipid A Biosynthesis N-terminal domain 22 92 4.8E-31 T 11-10-2018 IPR011499 Lipid A biosynthesis, N-terminal GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 AMK58_07705 ba730cfb152034b8b0083f1c2314ebbb 340 Gene3D G3DSA:2.30.42.10 245 333 2.6E-13 T 11-10-2018 AMK58_07705 ba730cfb152034b8b0083f1c2314ebbb 340 Pfam PF13365 Trypsin-like peptidase domain 69 202 3.4E-13 T 11-10-2018 AMK58_07705 ba730cfb152034b8b0083f1c2314ebbb 340 Gene3D G3DSA:2.40.10.120 32 240 1.1E-19 T 11-10-2018 AMK58_07705 ba730cfb152034b8b0083f1c2314ebbb 340 Pfam PF13180 PDZ domain 247 325 1.1E-11 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMK58_07705 ba730cfb152034b8b0083f1c2314ebbb 340 PRINTS PR00834 HtrA/DegQ protease family signature 195 212 5.3E-8 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMK58_07705 ba730cfb152034b8b0083f1c2314ebbb 340 PRINTS PR00834 HtrA/DegQ protease family signature 275 287 5.3E-8 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMK58_07705 ba730cfb152034b8b0083f1c2314ebbb 340 PRINTS PR00834 HtrA/DegQ protease family signature 78 90 5.3E-8 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMK58_07705 ba730cfb152034b8b0083f1c2314ebbb 340 PRINTS PR00834 HtrA/DegQ protease family signature 99 119 5.3E-8 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMK58_07705 ba730cfb152034b8b0083f1c2314ebbb 340 SMART SM00228 247 318 2.2E-8 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMK58_07705 ba730cfb152034b8b0083f1c2314ebbb 340 SUPERFAMILY SSF50156 244 326 1.58E-13 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 AMK58_07705 ba730cfb152034b8b0083f1c2314ebbb 340 SUPERFAMILY SSF50494 39 239 8.99E-26 T 11-10-2018 IPR009003 Peptidase S1, PA clan AMK58_18905 9b778e7d211db9dd8b66f337fc6198ec 203 Gene3D G3DSA:3.40.50.10610 21 202 1.6E-7 T 11-10-2018 AMK58_18905 9b778e7d211db9dd8b66f337fc6198ec 203 SUPERFAMILY SSF159594 29 202 3.4E-28 T 11-10-2018 AMK58_18905 9b778e7d211db9dd8b66f337fc6198ec 203 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 40 199 3.0E-37 T 11-10-2018 IPR005586 ABC-type transport auxiliary lipoprotein component AMK58_27430 bc3f3bef34f31bd2c0c34d171dad6f85 357 SUPERFAMILY SSF74650 11 354 1.51E-101 T 11-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 AMK58_27430 bc3f3bef34f31bd2c0c34d171dad6f85 357 PIRSF PIRSF005096 5 357 1.5E-112 T 11-10-2018 IPR015443 Aldose 1-epimerase GO:0016853|GO:0019318 KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 AMK58_27430 bc3f3bef34f31bd2c0c34d171dad6f85 357 Gene3D G3DSA:2.70.98.10 4 357 8.7E-108 T 11-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 AMK58_27430 bc3f3bef34f31bd2c0c34d171dad6f85 357 Pfam PF01263 Aldose 1-epimerase 22 353 3.8E-77 T 11-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 AMK58_23910 e0f7667d5003e28262b1128d3ccb1c88 426 Gene3D G3DSA:3.30.9.10 123 344 4.7E-66 T 11-10-2018 AMK58_23910 e0f7667d5003e28262b1128d3ccb1c88 426 Gene3D G3DSA:3.50.50.60 29 380 4.7E-66 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_23910 e0f7667d5003e28262b1128d3ccb1c88 426 SUPERFAMILY SSF51905 27 279 1.55E-44 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_23910 e0f7667d5003e28262b1128d3ccb1c88 426 Pfam PF01266 FAD dependent oxidoreductase 29 381 9.1E-45 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMK58_21045 7b8cfd615f19285901ea9f86fe601126 411 Gene3D G3DSA:3.30.70.260 265 343 6.4E-57 T 11-10-2018 AMK58_21045 7b8cfd615f19285901ea9f86fe601126 411 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 60 406 4.4E-114 T 11-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMK58_21045 7b8cfd615f19285901ea9f86fe601126 411 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 4 407 8.9E-129 T 11-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMK58_21045 7b8cfd615f19285901ea9f86fe601126 411 SUPERFAMILY SSF53633 3 248 2.88E-73 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMK58_21045 7b8cfd615f19285901ea9f86fe601126 411 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 11-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMK58_21045 7b8cfd615f19285901ea9f86fe601126 411 Gene3D G3DSA:3.40.1160.10 1 260 1.9E-85 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMK58_21045 7b8cfd615f19285901ea9f86fe601126 411 SUPERFAMILY SSF55021 253 332 4.85E-21 T 11-10-2018 AMK58_21045 7b8cfd615f19285901ea9f86fe601126 411 PIRSF PIRSF000726 59 411 4.0E-127 T 11-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMK58_21045 7b8cfd615f19285901ea9f86fe601126 411 PIRSF PIRSF000726 1 63 1.1E-19 T 11-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMK58_21045 7b8cfd615f19285901ea9f86fe601126 411 SUPERFAMILY SSF55021 334 409 2.98E-22 T 11-10-2018 AMK58_21045 7b8cfd615f19285901ea9f86fe601126 411 Gene3D G3DSA:3.30.70.260 261 408 6.4E-57 T 11-10-2018 AMK58_21045 7b8cfd615f19285901ea9f86fe601126 411 Pfam PF00696 Amino acid kinase family 3 229 1.7E-51 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 AMK58_21045 7b8cfd615f19285901ea9f86fe601126 411 Pfam PF13840 ACT domain 341 403 4.6E-15 T 11-10-2018 IPR027795 CASTOR, ACT domain AMK58_21045 7b8cfd615f19285901ea9f86fe601126 411 Pfam PF01842 ACT domain 270 329 2.7E-13 T 11-10-2018 IPR002912 ACT domain AMK58_27405 0e4c3c2f3e5620eed5b896837641ca33 518 SMART SM00382 289 485 1.2E-5 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_27405 0e4c3c2f3e5620eed5b896837641ca33 518 SMART SM00382 30 220 7.9E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_27405 0e4c3c2f3e5620eed5b896837641ca33 518 ProSitePatterns PS00211 ABC transporters family signature. 409 423 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_27405 0e4c3c2f3e5620eed5b896837641ca33 518 Pfam PF00005 ABC transporter 281 436 2.0E-15 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_27405 0e4c3c2f3e5620eed5b896837641ca33 518 Gene3D G3DSA:3.40.50.300 2 243 3.7E-53 T 11-10-2018 AMK58_27405 0e4c3c2f3e5620eed5b896837641ca33 518 Pfam PF00005 ABC transporter 21 172 2.9E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_27405 0e4c3c2f3e5620eed5b896837641ca33 518 SUPERFAMILY SSF52540 249 496 1.36E-42 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_27405 0e4c3c2f3e5620eed5b896837641ca33 518 SUPERFAMILY SSF52540 4 229 1.13E-54 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_27405 0e4c3c2f3e5620eed5b896837641ca33 518 Gene3D G3DSA:3.40.50.300 249 511 1.3E-40 T 11-10-2018 AMK58_19135 2002c361037d5cccdc128dfa0ab95104 187 PIRSF PIRSF000239 1 187 2.9E-53 T 11-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMK58_19135 2002c361037d5cccdc128dfa0ab95104 187 Pfam PF00578 AhpC/TSA family 6 132 6.0E-34 T 11-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMK58_19135 2002c361037d5cccdc128dfa0ab95104 187 Gene3D G3DSA:3.40.30.10 1 186 5.1E-61 T 11-10-2018 AMK58_19135 2002c361037d5cccdc128dfa0ab95104 187 SUPERFAMILY SSF52833 1 186 3.37E-57 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_19135 2002c361037d5cccdc128dfa0ab95104 187 TIGRFAM TIGR03137 AhpC: peroxiredoxin 1 187 1.9E-104 T 11-10-2018 IPR017559 Alkyl hydroperoxide reductase subunit C GO:0006979|GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMK58_19135 2002c361037d5cccdc128dfa0ab95104 187 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 156 181 8.0E-7 T 11-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMK58_15245 ecb5c2f1379a7d411a954d36ee084664 533 Pfam PF00171 Aldehyde dehydrogenase family 21 459 7.0E-40 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMK58_15245 ecb5c2f1379a7d411a954d36ee084664 533 Gene3D G3DSA:3.40.309.10 268 456 5.5E-208 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMK58_15245 ecb5c2f1379a7d411a954d36ee084664 533 SUPERFAMILY SSF53720 21 519 3.4E-98 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMK58_15245 ecb5c2f1379a7d411a954d36ee084664 533 Gene3D G3DSA:3.40.605.10 43 521 5.5E-208 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMK58_26315 51aba0e38430cc6b7df7454148eb0d1b 320 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 65 3.5E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_26315 51aba0e38430cc6b7df7454148eb0d1b 320 Gene3D G3DSA:3.40.190.10 166 268 4.6E-66 T 11-10-2018 AMK58_26315 51aba0e38430cc6b7df7454148eb0d1b 320 Gene3D G3DSA:1.10.10.10 6 94 9.0E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_26315 51aba0e38430cc6b7df7454148eb0d1b 320 SUPERFAMILY SSF46785 5 115 4.64E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_26315 51aba0e38430cc6b7df7454148eb0d1b 320 SUPERFAMILY SSF53850 93 301 6.88E-47 T 11-10-2018 AMK58_26315 51aba0e38430cc6b7df7454148eb0d1b 320 Pfam PF03466 LysR substrate binding domain 91 296 1.0E-44 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_26315 51aba0e38430cc6b7df7454148eb0d1b 320 Gene3D G3DSA:3.40.190.10 95 294 4.6E-66 T 11-10-2018 AMK58_07415 dbf511724f2de90688a15dc4a89f8374 654 SUPERFAMILY SSF48435 33 482 7.98E-63 T 11-10-2018 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 AMK58_07415 dbf511724f2de90688a15dc4a89f8374 654 SUPERFAMILY SSF53955 502 640 1.02E-43 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily AMK58_07415 dbf511724f2de90688a15dc4a89f8374 654 Gene3D G3DSA:1.25.20.10 29 396 4.9E-9 T 11-10-2018 AMK58_07415 dbf511724f2de90688a15dc4a89f8374 654 Gene3D G3DSA:1.10.530.10 498 653 6.2E-46 T 11-10-2018 AMK58_07415 dbf511724f2de90688a15dc4a89f8374 654 Pfam PF01464 Transglycosylase SLT domain 503 601 9.4E-26 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 AMK58_16975 02265ede279258b60eec40c9299e6887 459 TIGRFAM TIGR00797 matE: MATE efflux family protein 28 426 8.7E-55 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AMK58_16975 02265ede279258b60eec40c9299e6887 459 PIRSF PIRSF006603 19 454 2.4E-49 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AMK58_16975 02265ede279258b60eec40c9299e6887 459 Pfam PF01554 MatE 259 413 9.4E-22 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AMK58_16975 02265ede279258b60eec40c9299e6887 459 Pfam PF01554 MatE 28 187 1.2E-21 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AMK58_17310 6a67134b65d0d96dc60c73fb26e9760c 525 SMART SM00388 279 349 2.5E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_17310 6a67134b65d0d96dc60c73fb26e9760c 525 PRINTS PR00344 Bacterial sensor protein C-terminal signature 470 488 1.5E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_17310 6a67134b65d0d96dc60c73fb26e9760c 525 PRINTS PR00344 Bacterial sensor protein C-terminal signature 457 467 1.5E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_17310 6a67134b65d0d96dc60c73fb26e9760c 525 PRINTS PR00344 Bacterial sensor protein C-terminal signature 439 453 1.5E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_17310 6a67134b65d0d96dc60c73fb26e9760c 525 PRINTS PR00344 Bacterial sensor protein C-terminal signature 498 511 1.5E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_17310 6a67134b65d0d96dc60c73fb26e9760c 525 SUPERFAMILY SSF55874 349 512 3.27E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_17310 6a67134b65d0d96dc60c73fb26e9760c 525 SMART SM00387 390 514 4.5E-29 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_17310 6a67134b65d0d96dc60c73fb26e9760c 525 Gene3D G3DSA:3.30.450.20 133 273 1.1E-22 T 11-10-2018 AMK58_17310 6a67134b65d0d96dc60c73fb26e9760c 525 SUPERFAMILY SSF47384 275 347 1.65E-11 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_17310 6a67134b65d0d96dc60c73fb26e9760c 525 SUPERFAMILY SSF55785 137 257 1.38E-15 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_17310 6a67134b65d0d96dc60c73fb26e9760c 525 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 392 512 3.1E-18 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_17310 6a67134b65d0d96dc60c73fb26e9760c 525 Pfam PF08448 PAS fold 154 266 6.3E-15 T 11-10-2018 IPR013656 PAS fold-4 AMK58_17310 6a67134b65d0d96dc60c73fb26e9760c 525 Gene3D G3DSA:1.10.287.130 274 347 9.2E-19 T 11-10-2018 AMK58_17310 6a67134b65d0d96dc60c73fb26e9760c 525 Gene3D G3DSA:3.30.565.10 349 522 1.0E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_17310 6a67134b65d0d96dc60c73fb26e9760c 525 Pfam PF00512 His Kinase A (phospho-acceptor) domain 280 348 6.4E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_17310 6a67134b65d0d96dc60c73fb26e9760c 525 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 144 271 3.5E-12 T 11-10-2018 IPR000014 PAS domain AMK58_05950 a7e06198ff0531baa7283391f565a494 928 Pfam PF00990 Diguanylate cyclase, GGDEF domain 485 641 8.5E-51 T 11-10-2018 IPR000160 GGDEF domain AMK58_05950 a7e06198ff0531baa7283391f565a494 928 Pfam PF08448 PAS fold 370 476 4.8E-8 T 11-10-2018 IPR013656 PAS fold-4 AMK58_05950 a7e06198ff0531baa7283391f565a494 928 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 360 480 6.7E-11 T 11-10-2018 IPR000014 PAS domain AMK58_05950 a7e06198ff0531baa7283391f565a494 928 Gene3D G3DSA:3.20.20.450 659 910 9.7E-101 T 11-10-2018 IPR035919 EAL domain superfamily AMK58_05950 a7e06198ff0531baa7283391f565a494 928 Gene3D G3DSA:3.30.450.350 94 296 2.8E-16 T 11-10-2018 AMK58_05950 a7e06198ff0531baa7283391f565a494 928 Gene3D G3DSA:3.30.450.20 351 481 5.1E-15 T 11-10-2018 AMK58_05950 a7e06198ff0531baa7283391f565a494 928 SMART SM00267 474 646 9.7E-67 T 11-10-2018 IPR000160 GGDEF domain AMK58_05950 a7e06198ff0531baa7283391f565a494 928 SUPERFAMILY SSF141868 662 907 2.62E-89 T 11-10-2018 IPR035919 EAL domain superfamily AMK58_05950 a7e06198ff0531baa7283391f565a494 928 SUPERFAMILY SSF55073 490 647 1.8E-51 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_05950 a7e06198ff0531baa7283391f565a494 928 Pfam PF03924 CHASE domain 93 265 5.7E-34 T 11-10-2018 IPR006189 CHASE domain AMK58_05950 a7e06198ff0531baa7283391f565a494 928 Gene3D G3DSA:3.30.70.270 482 658 5.5E-62 T 11-10-2018 AMK58_05950 a7e06198ff0531baa7283391f565a494 928 SMART SM01079 90 278 4.7E-38 T 11-10-2018 IPR006189 CHASE domain AMK58_05950 a7e06198ff0531baa7283391f565a494 928 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 484 644 3.9E-42 T 11-10-2018 IPR000160 GGDEF domain AMK58_05950 a7e06198ff0531baa7283391f565a494 928 Pfam PF00563 EAL domain 662 897 1.4E-76 T 11-10-2018 IPR001633 EAL domain AMK58_05950 a7e06198ff0531baa7283391f565a494 928 SUPERFAMILY SSF55785 356 471 6.46E-14 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_05950 a7e06198ff0531baa7283391f565a494 928 SMART SM00052 656 902 9.2E-114 T 11-10-2018 IPR001633 EAL domain AMK58_07955 680aef57558275682d3da6d31f20dfe4 203 Pfam PF01066 CDP-alcohol phosphatidyltransferase 5 71 3.2E-16 T 11-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMK58_07955 680aef57558275682d3da6d31f20dfe4 203 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 49 71 - T 11-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMK58_07955 680aef57558275682d3da6d31f20dfe4 203 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 4 181 3.7E-46 T 11-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 AMK58_07955 680aef57558275682d3da6d31f20dfe4 203 Gene3D G3DSA:1.20.120.1760 3 178 4.7E-13 T 11-10-2018 AMK58_07955 680aef57558275682d3da6d31f20dfe4 203 PIRSF PIRSF000847 1 190 2.1E-45 T 11-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 AMK58_08090 6eb168770f7793c4208dd74cab2438cf 344 TIGRFAM TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase 18 338 3.3E-104 T 11-10-2018 IPR005860 L-threonine-O-3-phosphate decarboxylase GO:0003824|GO:0009236 KEGG: 00860+4.1.1.81|MetaCyc: PWY-5443 AMK58_08090 6eb168770f7793c4208dd74cab2438cf 344 Gene3D G3DSA:3.90.1150.10 36 322 1.2E-54 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_08090 6eb168770f7793c4208dd74cab2438cf 344 Pfam PF00155 Aminotransferase class I and II 67 324 8.2E-32 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMK58_08090 6eb168770f7793c4208dd74cab2438cf 344 SUPERFAMILY SSF53383 18 328 5.56E-54 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_08090 6eb168770f7793c4208dd74cab2438cf 344 Gene3D G3DSA:3.40.640.10 48 252 1.2E-54 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_24050 21d61e5bbedcf272ad6b0c4029f0c28a 1041 SUPERFAMILY SSF82693 140 327 3.27E-20 T 11-10-2018 AMK58_24050 21d61e5bbedcf272ad6b0c4029f0c28a 1041 Pfam PF00873 AcrB/AcrD/AcrF family 7 1004 6.0E-165 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_24050 21d61e5bbedcf272ad6b0c4029f0c28a 1041 Gene3D G3DSA:1.20.1640.10 13 509 1.8E-247 T 11-10-2018 AMK58_24050 21d61e5bbedcf272ad6b0c4029f0c28a 1041 PRINTS PR00702 Acriflavin resistance protein family signature 13 37 2.8E-21 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_24050 21d61e5bbedcf272ad6b0c4029f0c28a 1041 PRINTS PR00702 Acriflavin resistance protein family signature 440 463 2.8E-21 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_24050 21d61e5bbedcf272ad6b0c4029f0c28a 1041 PRINTS PR00702 Acriflavin resistance protein family signature 465 488 2.8E-21 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_24050 21d61e5bbedcf272ad6b0c4029f0c28a 1041 PRINTS PR00702 Acriflavin resistance protein family signature 333 356 2.8E-21 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_24050 21d61e5bbedcf272ad6b0c4029f0c28a 1041 PRINTS PR00702 Acriflavin resistance protein family signature 387 411 2.8E-21 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_24050 21d61e5bbedcf272ad6b0c4029f0c28a 1041 PRINTS PR00702 Acriflavin resistance protein family signature 41 59 2.8E-21 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_24050 21d61e5bbedcf272ad6b0c4029f0c28a 1041 Gene3D G3DSA:3.30.2090.10 182 271 1.8E-247 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_24050 21d61e5bbedcf272ad6b0c4029f0c28a 1041 Gene3D G3DSA:3.30.70.1320 139 329 1.8E-247 T 11-10-2018 AMK58_24050 21d61e5bbedcf272ad6b0c4029f0c28a 1041 SUPERFAMILY SSF82866 295 487 3.66E-32 T 11-10-2018 AMK58_24050 21d61e5bbedcf272ad6b0c4029f0c28a 1041 Gene3D G3DSA:3.30.70.1440 652 851 1.8E-247 T 11-10-2018 AMK58_24050 21d61e5bbedcf272ad6b0c4029f0c28a 1041 Gene3D G3DSA:1.20.1640.10 510 1003 1.8E-247 T 11-10-2018 AMK58_24050 21d61e5bbedcf272ad6b0c4029f0c28a 1041 SUPERFAMILY SSF82714 705 789 6.8E-17 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_24050 21d61e5bbedcf272ad6b0c4029f0c28a 1041 Gene3D G3DSA:3.30.70.1430 553 651 1.8E-247 T 11-10-2018 AMK58_24050 21d61e5bbedcf272ad6b0c4029f0c28a 1041 Gene3D G3DSA:3.30.2090.10 703 791 1.8E-247 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_24050 21d61e5bbedcf272ad6b0c4029f0c28a 1041 SUPERFAMILY SSF82866 788 1011 3.66E-45 T 11-10-2018 AMK58_24050 21d61e5bbedcf272ad6b0c4029f0c28a 1041 SUPERFAMILY SSF82714 188 268 1.29E-10 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_24050 21d61e5bbedcf272ad6b0c4029f0c28a 1041 SUPERFAMILY SSF82693 552 630 6.02E-6 T 11-10-2018 AMK58_24050 21d61e5bbedcf272ad6b0c4029f0c28a 1041 Gene3D G3DSA:3.30.70.1430 43 799 1.8E-247 T 11-10-2018 AMK58_24050 21d61e5bbedcf272ad6b0c4029f0c28a 1041 SUPERFAMILY SSF82693 43 139 1.03E-18 T 11-10-2018 AMK58_24760 b19bb1da25ec5a51a81a40951d2911fc 679 Gene3D G3DSA:1.10.1370.10 144 604 2.0E-226 T 11-10-2018 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 AMK58_24760 b19bb1da25ec5a51a81a40951d2911fc 679 Gene3D G3DSA:1.10.1370.40 17 670 2.0E-226 T 11-10-2018 AMK58_24760 b19bb1da25ec5a51a81a40951d2911fc 679 SUPERFAMILY SSF55486 1 672 1.25E-181 T 11-10-2018 AMK58_24760 b19bb1da25ec5a51a81a40951d2911fc 679 Pfam PF01432 Peptidase family M3 228 671 2.8E-116 T 11-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 AMK58_07105 87b651cc8f4ecef054747599fbfa4fef 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 90 101 1.7E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_07105 87b651cc8f4ecef054747599fbfa4fef 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 186 203 1.7E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_07105 87b651cc8f4ecef054747599fbfa4fef 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 221 241 1.7E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_07105 87b651cc8f4ecef054747599fbfa4fef 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 184 1.7E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_07105 87b651cc8f4ecef054747599fbfa4fef 261 Gene3D G3DSA:3.40.50.720 15 207 9.0E-39 T 11-10-2018 AMK58_07105 87b651cc8f4ecef054747599fbfa4fef 261 PIRSF PIRSF000094 8 261 1.1E-93 T 11-10-2018 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AMK58_07105 87b651cc8f4ecef054747599fbfa4fef 261 Gene3D G3DSA:1.10.8.400 208 261 1.0E-14 T 11-10-2018 AMK58_07105 87b651cc8f4ecef054747599fbfa4fef 261 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 20 258 8.7E-86 T 11-10-2018 AMK58_07105 87b651cc8f4ecef054747599fbfa4fef 261 SUPERFAMILY SSF51735 12 260 1.79E-66 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_16005 8203af3a3cad82ff571b36e06ad103c2 420 SUPERFAMILY SSF141868 244 399 6.67E-7 T 11-10-2018 IPR035919 EAL domain superfamily AMK58_28980 7b4f4f7532ea97d598b5529c2625810d 353 Gene3D G3DSA:3.40.50.720 5 327 6.4E-168 T 11-10-2018 AMK58_28980 7b4f4f7532ea97d598b5529c2625810d 353 TIGRFAM TIGR01472 gmd: GDP-mannose 4,6-dehydratase 3 342 1.3E-183 T 11-10-2018 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|Reactome: R-HSA-6787639 AMK58_28980 7b4f4f7532ea97d598b5529c2625810d 353 Pfam PF16363 GDP-mannose 4,6 dehydratase 6 336 8.9E-162 T 11-10-2018 IPR016040 NAD(P)-binding domain AMK58_28980 7b4f4f7532ea97d598b5529c2625810d 353 SUPERFAMILY SSF51735 2 340 5.27E-87 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_28980 7b4f4f7532ea97d598b5529c2625810d 353 Hamap MF_00955 GDP-mannose 4,6-dehydratase [gmd]. 3 346 56.948 T 11-10-2018 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|Reactome: R-HSA-6787639 AMK58_28980 7b4f4f7532ea97d598b5529c2625810d 353 Gene3D G3DSA:3.90.25.10 193 341 6.4E-168 T 11-10-2018 AMK58_01920 fdec0b8cf9e12fd7ba232478b36be671 986 Gene3D G3DSA:1.20.1480.50 264 358 8.1E-8 T 11-10-2018 AMK58_01920 fdec0b8cf9e12fd7ba232478b36be671 986 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 730 836 3.1E-21 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_01920 fdec0b8cf9e12fd7ba232478b36be671 986 Gene3D G3DSA:3.30.565.10 687 841 1.8E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_01920 fdec0b8cf9e12fd7ba232478b36be671 986 Pfam PF00072 Response regulator receiver domain 868 980 1.3E-11 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_01920 fdec0b8cf9e12fd7ba232478b36be671 986 SUPERFAMILY SSF52172 868 983 3.98E-21 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_01920 fdec0b8cf9e12fd7ba232478b36be671 986 Pfam PF08448 PAS fold 507 603 3.6E-9 T 11-10-2018 IPR013656 PAS fold-4 AMK58_01920 fdec0b8cf9e12fd7ba232478b36be671 986 Pfam PF08448 PAS fold 367 479 9.5E-18 T 11-10-2018 IPR013656 PAS fold-4 AMK58_01920 fdec0b8cf9e12fd7ba232478b36be671 986 SMART SM00388 621 686 1.3E-10 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_01920 fdec0b8cf9e12fd7ba232478b36be671 986 SMART SM00448 866 980 9.5E-16 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_01920 fdec0b8cf9e12fd7ba232478b36be671 986 Gene3D G3DSA:3.30.450.20 367 489 9.6E-24 T 11-10-2018 AMK58_01920 fdec0b8cf9e12fd7ba232478b36be671 986 SUPERFAMILY SSF158472 302 350 1.83E-7 T 11-10-2018 AMK58_01920 fdec0b8cf9e12fd7ba232478b36be671 986 SUPERFAMILY SSF55785 350 476 1.05E-17 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_01920 fdec0b8cf9e12fd7ba232478b36be671 986 Pfam PF02743 Cache domain 53 206 4.9E-13 T 11-10-2018 IPR033479 Double Cache domain 1 AMK58_01920 fdec0b8cf9e12fd7ba232478b36be671 986 SUPERFAMILY SSF55874 676 841 1.96E-39 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_01920 fdec0b8cf9e12fd7ba232478b36be671 986 SMART SM00091 361 427 3.8E-9 T 11-10-2018 IPR000014 PAS domain AMK58_01920 fdec0b8cf9e12fd7ba232478b36be671 986 SUPERFAMILY SSF47384 607 687 3.73E-14 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_01920 fdec0b8cf9e12fd7ba232478b36be671 986 Gene3D G3DSA:1.10.287.130 612 686 1.8E-13 T 11-10-2018 AMK58_01920 fdec0b8cf9e12fd7ba232478b36be671 986 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 359 485 6.0E-11 T 11-10-2018 IPR000014 PAS domain AMK58_01920 fdec0b8cf9e12fd7ba232478b36be671 986 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 517 608 4.1E-9 T 11-10-2018 IPR000014 PAS domain AMK58_01920 fdec0b8cf9e12fd7ba232478b36be671 986 Pfam PF00512 His Kinase A (phospho-acceptor) domain 622 686 1.6E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_01920 fdec0b8cf9e12fd7ba232478b36be671 986 Gene3D G3DSA:3.40.50.2300 856 985 7.6E-21 T 11-10-2018 AMK58_01920 fdec0b8cf9e12fd7ba232478b36be671 986 Gene3D G3DSA:3.30.450.20 490 611 2.1E-18 T 11-10-2018 AMK58_01920 fdec0b8cf9e12fd7ba232478b36be671 986 SMART SM00304 301 354 4.0E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_01920 fdec0b8cf9e12fd7ba232478b36be671 986 SMART SM00387 730 839 7.9E-28 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_01920 fdec0b8cf9e12fd7ba232478b36be671 986 SUPERFAMILY SSF103190 47 177 1.67E-8 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily AMK58_01920 fdec0b8cf9e12fd7ba232478b36be671 986 PRINTS PR00344 Bacterial sensor protein C-terminal signature 823 836 4.7E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_01920 fdec0b8cf9e12fd7ba232478b36be671 986 PRINTS PR00344 Bacterial sensor protein C-terminal signature 767 781 4.7E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_01920 fdec0b8cf9e12fd7ba232478b36be671 986 PRINTS PR00344 Bacterial sensor protein C-terminal signature 799 817 4.7E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_01920 fdec0b8cf9e12fd7ba232478b36be671 986 PRINTS PR00344 Bacterial sensor protein C-terminal signature 785 795 4.7E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_01920 fdec0b8cf9e12fd7ba232478b36be671 986 Gene3D G3DSA:3.30.450.20 26 174 2.5E-23 T 11-10-2018 AMK58_01920 fdec0b8cf9e12fd7ba232478b36be671 986 SUPERFAMILY SSF55785 474 593 4.19E-15 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_19690 9a3d1f1ef1e313c1c0e7f2e1315e2ef9 226 SMART SM00382 27 214 4.4E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_19690 9a3d1f1ef1e313c1c0e7f2e1315e2ef9 226 Gene3D G3DSA:3.40.50.300 1 223 1.3E-58 T 11-10-2018 AMK58_19690 9a3d1f1ef1e313c1c0e7f2e1315e2ef9 226 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_19690 9a3d1f1ef1e313c1c0e7f2e1315e2ef9 226 Pfam PF00005 ABC transporter 18 165 1.6E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_19690 9a3d1f1ef1e313c1c0e7f2e1315e2ef9 226 SUPERFAMILY SSF52540 1 217 8.4E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_19690 9a3d1f1ef1e313c1c0e7f2e1315e2ef9 226 TIGRFAM TIGR02673 FtsE: cell division ATP-binding protein FtsE 1 214 2.7E-81 T 11-10-2018 IPR005286 Cell division protein FtsE, ATP-binding GO:0005524|GO:0051301 AMK58_07840 f503b1f0d656ffe4a195ee88fbfa40aa 366 Gene3D G3DSA:3.40.190.10 29 334 1.7E-111 T 11-10-2018 AMK58_07840 f503b1f0d656ffe4a195ee88fbfa40aa 366 SUPERFAMILY SSF53850 27 365 1.83E-79 T 11-10-2018 AMK58_07840 f503b1f0d656ffe4a195ee88fbfa40aa 366 Gene3D G3DSA:3.40.190.10 134 360 1.7E-111 T 11-10-2018 AMK58_07840 f503b1f0d656ffe4a195ee88fbfa40aa 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 125 141 4.7E-37 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AMK58_07840 f503b1f0d656ffe4a195ee88fbfa40aa 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 265 284 4.7E-37 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AMK58_07840 f503b1f0d656ffe4a195ee88fbfa40aa 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 92 105 4.7E-37 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AMK58_07840 f503b1f0d656ffe4a195ee88fbfa40aa 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 32 48 4.7E-37 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AMK58_07840 f503b1f0d656ffe4a195ee88fbfa40aa 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 48 69 4.7E-37 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AMK58_07840 f503b1f0d656ffe4a195ee88fbfa40aa 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 155 169 4.7E-37 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AMK58_07840 f503b1f0d656ffe4a195ee88fbfa40aa 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 178 197 4.7E-37 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AMK58_07840 f503b1f0d656ffe4a195ee88fbfa40aa 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 215 234 4.7E-37 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AMK58_07840 f503b1f0d656ffe4a195ee88fbfa40aa 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 310 336 4.7E-37 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AMK58_07840 f503b1f0d656ffe4a195ee88fbfa40aa 366 PIRSF PIRSF019574 1 366 5.0E-108 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AMK58_07840 f503b1f0d656ffe4a195ee88fbfa40aa 366 Pfam PF13416 Bacterial extracellular solute-binding protein 44 331 1.2E-23 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMK58_20110 99cab4733931d25d3306751385ab3c4c 68 ProSitePatterns PS01047 Heavy-metal-associated domain. 6 35 - T 11-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 AMK58_20110 99cab4733931d25d3306751385ab3c4c 68 Gene3D G3DSA:3.30.70.100 1 63 3.3E-21 T 11-10-2018 AMK58_20110 99cab4733931d25d3306751385ab3c4c 68 Pfam PF00403 Heavy-metal-associated domain 4 61 3.2E-16 T 11-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AMK58_20110 99cab4733931d25d3306751385ab3c4c 68 SUPERFAMILY SSF55008 2 63 1.44E-17 T 11-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 AMK58_04535 7a3c1638a4ea09cc73f06104264a5c0f 663 Pfam PF07238 PilZ domain 560 642 2.5E-8 T 11-10-2018 IPR009875 PilZ domain GO:0035438 AMK58_04535 7a3c1638a4ea09cc73f06104264a5c0f 663 SMART SM00283 298 545 3.3E-43 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_04535 7a3c1638a4ea09cc73f06104264a5c0f 663 Gene3D G3DSA:1.10.287.950 266 565 2.0E-54 T 11-10-2018 AMK58_04535 7a3c1638a4ea09cc73f06104264a5c0f 663 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 326 355 5.7E-13 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_04535 7a3c1638a4ea09cc73f06104264a5c0f 663 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 473 502 5.7E-13 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_04535 7a3c1638a4ea09cc73f06104264a5c0f 663 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 425 454 5.7E-13 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_04535 7a3c1638a4ea09cc73f06104264a5c0f 663 Gene3D G3DSA:1.20.1480.50 169 265 1.6E-15 T 11-10-2018 AMK58_04535 7a3c1638a4ea09cc73f06104264a5c0f 663 SUPERFAMILY SSF58104 236 546 4.71E-57 T 11-10-2018 AMK58_04535 7a3c1638a4ea09cc73f06104264a5c0f 663 Pfam PF02203 Tar ligand binding domain homologue 2 168 4.4E-13 T 11-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 AMK58_04535 7a3c1638a4ea09cc73f06104264a5c0f 663 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 378 520 1.2E-31 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_04535 7a3c1638a4ea09cc73f06104264a5c0f 663 SUPERFAMILY SSF141371 556 635 1.06E-5 T 11-10-2018 AMK58_04535 7a3c1638a4ea09cc73f06104264a5c0f 663 Pfam PF00672 HAMP domain 209 252 6.3E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_04535 7a3c1638a4ea09cc73f06104264a5c0f 663 SMART SM00304 208 261 3.7E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_04535 7a3c1638a4ea09cc73f06104264a5c0f 663 SMART SM00304 507 563 91.0 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_23615 188294e5909392bf12e567c0d1c7dfba 132 SMART SM00448 9 122 5.6E-32 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_23615 188294e5909392bf12e567c0d1c7dfba 132 Gene3D G3DSA:3.40.50.12740 8 132 9.2E-39 T 11-10-2018 AMK58_23615 188294e5909392bf12e567c0d1c7dfba 132 Pfam PF00072 Response regulator receiver domain 11 122 1.2E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_23615 188294e5909392bf12e567c0d1c7dfba 132 SUPERFAMILY SSF52172 8 127 8.4E-35 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_27690 75a8ebca208434a05467da9290830ea9 841 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 363 473 2.8E-17 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_27690 75a8ebca208434a05467da9290830ea9 841 Gene3D G3DSA:3.30.565.10 321 473 5.0E-30 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_27690 75a8ebca208434a05467da9290830ea9 841 Gene3D G3DSA:3.40.190.10 620 835 4.7E-130 T 11-10-2018 AMK58_27690 75a8ebca208434a05467da9290830ea9 841 Pfam PF00512 His Kinase A (phospho-acceptor) domain 253 310 3.9E-8 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_27690 75a8ebca208434a05467da9290830ea9 841 SUPERFAMILY SSF47384 235 312 8.63E-13 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_27690 75a8ebca208434a05467da9290830ea9 841 Pfam PF08521 Two-component sensor kinase N-terminal 26 176 3.7E-39 T 11-10-2018 IPR013727 Two-component sensor kinase, N-terminal AMK58_27690 75a8ebca208434a05467da9290830ea9 841 Gene3D G3DSA:1.10.287.130 204 317 1.9E-15 T 11-10-2018 AMK58_27690 75a8ebca208434a05467da9290830ea9 841 SUPERFAMILY SSF55874 307 472 3.54E-32 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_27690 75a8ebca208434a05467da9290830ea9 841 SMART SM00387 363 475 4.3E-27 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_27690 75a8ebca208434a05467da9290830ea9 841 SMART SM00388 252 317 2.0E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_27690 75a8ebca208434a05467da9290830ea9 841 Pfam PF13531 Bacterial extracellular solute-binding protein 521 780 2.8E-17 T 11-10-2018 AMK58_27690 75a8ebca208434a05467da9290830ea9 841 Gene3D G3DSA:3.40.190.10 521 822 4.7E-130 T 11-10-2018 AMK58_27690 75a8ebca208434a05467da9290830ea9 841 PRINTS PR00344 Bacterial sensor protein C-terminal signature 402 416 1.3E-8 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_27690 75a8ebca208434a05467da9290830ea9 841 PRINTS PR00344 Bacterial sensor protein C-terminal signature 459 472 1.3E-8 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_27690 75a8ebca208434a05467da9290830ea9 841 PRINTS PR00344 Bacterial sensor protein C-terminal signature 435 453 1.3E-8 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_27690 75a8ebca208434a05467da9290830ea9 841 SUPERFAMILY SSF53850 521 793 7.38E-43 T 11-10-2018 AMK58_29170 b183f5089c4527370c31c5973488a22e 501 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 21 439 5.4E-153 T 11-10-2018 IPR002823 Protein of unknown function DUF112, transmembrane AMK58_24360 c9f3f88759b8a54e858c1710a41307d7 640 Pfam PF13844 Glycosyl transferase family 41 431 622 8.5E-45 T 11-10-2018 IPR029489 O-GlcNAc transferase, C-terminal KEGG: 00514+2.4.1.255|MetaCyc: PWY-7437|Reactome: R-HSA-3214847|Reactome: R-HSA-5689603 AMK58_24360 c9f3f88759b8a54e858c1710a41307d7 640 Pfam PF13844 Glycosyl transferase family 41 272 422 7.6E-40 T 11-10-2018 IPR029489 O-GlcNAc transferase, C-terminal KEGG: 00514+2.4.1.255|MetaCyc: PWY-7437|Reactome: R-HSA-3214847|Reactome: R-HSA-5689603 AMK58_24360 c9f3f88759b8a54e858c1710a41307d7 640 Gene3D G3DSA:1.25.40.10 10 126 1.2E-14 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_24360 c9f3f88759b8a54e858c1710a41307d7 640 Pfam PF07719 Tetratricopeptide repeat 158 190 9.6E-6 T 11-10-2018 IPR013105 Tetratricopeptide repeat 2 AMK58_24360 c9f3f88759b8a54e858c1710a41307d7 640 SUPERFAMILY SSF48452 58 193 1.61E-28 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_24360 c9f3f88759b8a54e858c1710a41307d7 640 Gene3D G3DSA:3.40.50.2000 427 606 1.4E-134 T 11-10-2018 AMK58_24360 c9f3f88759b8a54e858c1710a41307d7 640 Pfam PF13432 Tetratricopeptide repeat 93 157 3.3E-8 T 11-10-2018 AMK58_24360 c9f3f88759b8a54e858c1710a41307d7 640 Gene3D G3DSA:3.40.50.11380 263 612 1.4E-134 T 11-10-2018 AMK58_24360 c9f3f88759b8a54e858c1710a41307d7 640 Gene3D G3DSA:1.25.40.10 127 226 2.5E-21 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_24360 c9f3f88759b8a54e858c1710a41307d7 640 SMART SM00028 89 122 0.74 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_24360 c9f3f88759b8a54e858c1710a41307d7 640 SMART SM00028 123 156 20.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_24360 c9f3f88759b8a54e858c1710a41307d7 640 SMART SM00028 55 88 1.7 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_24360 c9f3f88759b8a54e858c1710a41307d7 640 SMART SM00028 157 190 8.0E-5 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_15405 782aac6c0136d2535462f458abd5c804 227 Pfam PF00239 Resolvase, N terminal domain 6 155 2.4E-35 T 11-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AMK58_15405 782aac6c0136d2535462f458abd5c804 227 Gene3D G3DSA:1.10.10.2600 140 225 1.3E-7 T 11-10-2018 IPR038109 DNA-binding recombinase domain superfamily AMK58_15405 782aac6c0136d2535462f458abd5c804 227 SUPERFAMILY SSF53041 5 156 2.62E-33 T 11-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 AMK58_15405 782aac6c0136d2535462f458abd5c804 227 Gene3D G3DSA:3.40.50.1390 3 139 9.3E-37 T 11-10-2018 AMK58_15405 782aac6c0136d2535462f458abd5c804 227 ProSitePatterns PS00397 Site-specific recombinases active site. 9 17 - T 11-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 AMK58_15405 782aac6c0136d2535462f458abd5c804 227 SMART SM00857 6 156 2.8E-49 T 11-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AMK58_15405 782aac6c0136d2535462f458abd5c804 227 Pfam PF07508 Recombinase 176 224 2.9E-9 T 11-10-2018 IPR011109 DNA-binding recombinase domain GO:0000150|GO:0003677 AMK58_21225 9b01273eb460ba325bb32ac39fd75d36 334 TIGRFAM TIGR01583 formate-DH-gamm: formate dehydrogenase, gamma subunit 116 317 1.7E-51 T 11-10-2018 IPR006471 Formate dehydrogenase, gamma subunit GO:0008863|GO:0009326|GO:0016021|GO:0045333 AMK58_21225 9b01273eb460ba325bb32ac39fd75d36 334 SUPERFAMILY SSF81342 112 323 4.0E-42 T 11-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 AMK58_21225 9b01273eb460ba325bb32ac39fd75d36 334 Pfam PF01292 Prokaryotic cytochrome b561 118 296 1.1E-19 T 11-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 AMK58_21225 9b01273eb460ba325bb32ac39fd75d36 334 Gene3D G3DSA:1.20.950.20 111 325 3.8E-65 T 11-10-2018 AMK58_16665 dade237854d8313903634641e9f963bf 78 Gene3D G3DSA:3.30.110.40 1 75 2.3E-27 T 11-10-2018 IPR036868 TusA-like domain superfamily AMK58_16665 dade237854d8313903634641e9f963bf 78 SUPERFAMILY SSF64307 4 74 5.36E-22 T 11-10-2018 IPR036868 TusA-like domain superfamily AMK58_16665 dade237854d8313903634641e9f963bf 78 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 6 30 - T 11-10-2018 IPR001455 TusA-like domain AMK58_16665 dade237854d8313903634641e9f963bf 78 Pfam PF01206 Sulfurtransferase TusA 4 73 3.7E-18 T 11-10-2018 IPR001455 TusA-like domain AMK58_17850 d797b86ff3c62f1b15e2b8ecda77ddf6 140 SUPERFAMILY SSF54197 5 135 8.35E-37 T 11-10-2018 IPR036265 HIT-like superfamily AMK58_17850 d797b86ff3c62f1b15e2b8ecda77ddf6 140 Gene3D G3DSA:3.30.428.10 1 138 3.8E-39 T 11-10-2018 IPR036265 HIT-like superfamily AMK58_17850 d797b86ff3c62f1b15e2b8ecda77ddf6 140 Pfam PF01230 HIT domain 13 108 2.7E-22 T 11-10-2018 IPR001310 Histidine triad (HIT) protein AMK58_17850 d797b86ff3c62f1b15e2b8ecda77ddf6 140 PRINTS PR00332 Histidine triad family signature 6 22 1.9E-11 T 11-10-2018 IPR001310 Histidine triad (HIT) protein AMK58_17850 d797b86ff3c62f1b15e2b8ecda77ddf6 140 PRINTS PR00332 Histidine triad family signature 94 104 1.9E-11 T 11-10-2018 IPR001310 Histidine triad (HIT) protein AMK58_17850 d797b86ff3c62f1b15e2b8ecda77ddf6 140 PRINTS PR00332 Histidine triad family signature 27 45 1.9E-11 T 11-10-2018 IPR001310 Histidine triad (HIT) protein AMK58_11235 901165ead6fa851b89faaee9ef2761f6 322 TIGRFAM TIGR01595 cas_CT1132: CRISPR-associated protein, CT1132 family 9 281 3.7E-79 T 11-10-2018 IPR006482 CRISPR-associated protein Cas7, subtype I-B/I-C AMK58_11235 901165ead6fa851b89faaee9ef2761f6 322 TIGRFAM TIGR02589 cas_Csd2: CRISPR-associated protein Cas7/Csd2, subtype I-C/DVULG 12 319 3.1E-107 T 11-10-2018 IPR013418 CRISPR-associated protein Csd2 AMK58_11235 901165ead6fa851b89faaee9ef2761f6 322 Pfam PF05107 CRISPR-associated protein Cas7 11 307 1.4E-106 T 11-10-2018 IPR006482 CRISPR-associated protein Cas7, subtype I-B/I-C AMK58_23700 796ea3e88dc2a496eedf4c3935e76cf9 265 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 78 254 3.0E-11 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_23700 796ea3e88dc2a496eedf4c3935e76cf9 265 Gene3D G3DSA:1.10.3720.10 2 258 1.5E-49 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_23700 796ea3e88dc2a496eedf4c3935e76cf9 265 SUPERFAMILY SSF161098 5 264 9.29E-60 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_28040 0ac9d04eed67fb32e624de4e7a1294c3 438 SUPERFAMILY SSF103473 23 437 5.23E-60 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_28040 0ac9d04eed67fb32e624de4e7a1294c3 438 Pfam PF00083 Sugar (and other) transporter 249 437 4.4E-11 T 11-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AMK58_28040 0ac9d04eed67fb32e624de4e7a1294c3 438 Pfam PF00083 Sugar (and other) transporter 25 225 1.6E-16 T 11-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AMK58_28040 0ac9d04eed67fb32e624de4e7a1294c3 438 ProSitePatterns PS00216 Sugar transport proteins signature 1. 305 322 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMK58_28040 0ac9d04eed67fb32e624de4e7a1294c3 438 Gene3D G3DSA:1.20.1250.20 22 438 1.5E-59 T 11-10-2018 AMK58_14645 fd5da82f1b9cb2617307b0ac5f312712 140 SMART SM00347 17 118 5.0E-7 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_14645 fd5da82f1b9cb2617307b0ac5f312712 140 SUPERFAMILY SSF46785 11 132 1.14E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_14645 fd5da82f1b9cb2617307b0ac5f312712 140 Gene3D G3DSA:1.10.10.10 2 137 2.0E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_14645 fd5da82f1b9cb2617307b0ac5f312712 140 Pfam PF12802 MarR family 23 83 2.0E-7 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_00305 f64747a325fb2f1c7db2f772e2035ae3 235 Hamap MF_02087 Pyridoxal phosphate homeostasis protein. 15 228 26.312 T 11-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 AMK58_00305 f64747a325fb2f1c7db2f772e2035ae3 235 Gene3D G3DSA:3.20.20.10 11 232 5.3E-80 T 11-10-2018 IPR029066 PLP-binding barrel AMK58_00305 f64747a325fb2f1c7db2f772e2035ae3 235 Pfam PF01168 Alanine racemase, N-terminal domain 18 230 1.3E-27 T 11-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMK58_00305 f64747a325fb2f1c7db2f772e2035ae3 235 PIRSF PIRSF004848 7 234 2.9E-64 T 11-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 AMK58_00305 f64747a325fb2f1c7db2f772e2035ae3 235 SUPERFAMILY SSF51419 12 227 5.82E-72 T 11-10-2018 IPR029066 PLP-binding barrel AMK58_00305 f64747a325fb2f1c7db2f772e2035ae3 235 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 15 229 2.4E-51 T 11-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 AMK58_17940 f558fdb9f25e3eb132710b0c9edc6c63 302 SMART SM00271 2 60 6.5E-30 T 11-10-2018 IPR001623 DnaJ domain AMK58_17940 f558fdb9f25e3eb132710b0c9edc6c63 302 Pfam PF01556 DnaJ C terminal domain 134 275 1.6E-32 T 11-10-2018 IPR002939 Chaperone DnaJ, C-terminal AMK58_17940 f558fdb9f25e3eb132710b0c9edc6c63 302 SUPERFAMILY SSF46565 2 120 4.54E-28 T 11-10-2018 IPR036869 Chaperone J-domain superfamily AMK58_17940 f558fdb9f25e3eb132710b0c9edc6c63 302 Gene3D G3DSA:2.60.260.20 127 195 5.4E-16 T 11-10-2018 AMK58_17940 f558fdb9f25e3eb132710b0c9edc6c63 302 PRINTS PR00625 DnaJ domain signature 23 38 2.8E-21 T 11-10-2018 IPR001623 DnaJ domain AMK58_17940 f558fdb9f25e3eb132710b0c9edc6c63 302 PRINTS PR00625 DnaJ domain signature 40 60 2.8E-21 T 11-10-2018 IPR001623 DnaJ domain AMK58_17940 f558fdb9f25e3eb132710b0c9edc6c63 302 PRINTS PR00625 DnaJ domain signature 5 23 2.8E-21 T 11-10-2018 IPR001623 DnaJ domain AMK58_17940 f558fdb9f25e3eb132710b0c9edc6c63 302 Pfam PF00226 DnaJ domain 3 65 2.9E-26 T 11-10-2018 IPR001623 DnaJ domain AMK58_17940 f558fdb9f25e3eb132710b0c9edc6c63 302 SUPERFAMILY SSF49493 201 277 7.59E-22 T 11-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AMK58_17940 f558fdb9f25e3eb132710b0c9edc6c63 302 Gene3D G3DSA:2.60.260.20 197 275 1.4E-29 T 11-10-2018 AMK58_17940 f558fdb9f25e3eb132710b0c9edc6c63 302 SUPERFAMILY SSF49493 125 204 5.1E-19 T 11-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AMK58_17940 f558fdb9f25e3eb132710b0c9edc6c63 302 ProSitePatterns PS00636 Nt-dnaJ domain signature. 45 64 - T 11-10-2018 IPR018253 DnaJ domain, conserved site AMK58_17940 f558fdb9f25e3eb132710b0c9edc6c63 302 Gene3D G3DSA:1.10.287.110 1 125 1.6E-30 T 11-10-2018 IPR036869 Chaperone J-domain superfamily AMK58_16290 ca142fcd5862d5d24eb65f5b4ac41ea4 282 SUPERFAMILY SSF52540 26 238 7.02E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_16290 ca142fcd5862d5d24eb65f5b4ac41ea4 282 Pfam PF00005 ABC transporter 48 187 1.5E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_16290 ca142fcd5862d5d24eb65f5b4ac41ea4 282 ProSitePatterns PS00211 ABC transporters family signature. 159 173 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_16290 ca142fcd5862d5d24eb65f5b4ac41ea4 282 Gene3D G3DSA:3.40.50.300 23 263 1.0E-59 T 11-10-2018 AMK58_16290 ca142fcd5862d5d24eb65f5b4ac41ea4 282 SMART SM00382 54 235 5.6E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_00450 b87e23d7f024bfe98a657121322a16c3 418 SMART SM00382 170 349 8.8E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_00450 b87e23d7f024bfe98a657121322a16c3 418 SUPERFAMILY SSF50249 49 125 2.68E-29 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_00450 b87e23d7f024bfe98a657121322a16c3 418 SMART SM00959 5 47 3.1E-17 T 11-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 AMK58_00450 b87e23d7f024bfe98a657121322a16c3 418 Pfam PF07498 Rho termination factor, N-terminal domain 5 46 2.3E-16 T 11-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 AMK58_00450 b87e23d7f024bfe98a657121322a16c3 418 Pfam PF07497 Rho termination factor, RNA-binding domain 52 125 7.6E-32 T 11-10-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 AMK58_00450 b87e23d7f024bfe98a657121322a16c3 418 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 418 249.678 T 11-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 AMK58_00450 b87e23d7f024bfe98a657121322a16c3 418 Gene3D G3DSA:3.40.50.300 130 417 1.1E-127 T 11-10-2018 AMK58_00450 b87e23d7f024bfe98a657121322a16c3 418 SUPERFAMILY SSF68912 1 45 1.02E-11 T 11-10-2018 IPR036269 Rho termination factor, N-terminal domain superfamily AMK58_00450 b87e23d7f024bfe98a657121322a16c3 418 SUPERFAMILY SSF52540 90 371 1.42E-68 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_00450 b87e23d7f024bfe98a657121322a16c3 418 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 160 363 1.5E-23 T 11-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMK58_00450 b87e23d7f024bfe98a657121322a16c3 418 Gene3D G3DSA:2.40.50.140 47 123 2.0E-34 T 11-10-2018 AMK58_00450 b87e23d7f024bfe98a657121322a16c3 418 SMART SM00357 52 118 9.7E-18 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 AMK58_00450 b87e23d7f024bfe98a657121322a16c3 418 Gene3D G3DSA:1.10.720.10 1 45 2.8E-16 T 11-10-2018 AMK58_00450 b87e23d7f024bfe98a657121322a16c3 418 TIGRFAM TIGR00767 rho: transcription termination factor Rho 2 418 1.0E-213 T 11-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 AMK58_19005 60831b3919bfda41681b3720f7ae9a54 483 SMART SM00845 335 481 2.8E-87 T 11-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 AMK58_19005 60831b3919bfda41681b3720f7ae9a54 483 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 152 166 - T 11-10-2018 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 AMK58_19005 60831b3919bfda41681b3720f7ae9a54 483 Pfam PF02934 GatB/GatE catalytic domain 13 296 2.5E-113 T 11-10-2018 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 AMK58_19005 60831b3919bfda41681b3720f7ae9a54 483 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 10 481 2.5E-164 T 11-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 AMK58_19005 60831b3919bfda41681b3720f7ae9a54 483 SUPERFAMILY SSF89095 304 409 1.26E-36 T 11-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 AMK58_19005 60831b3919bfda41681b3720f7ae9a54 483 Gene3D G3DSA:1.10.150.380 304 420 1.4E-41 T 11-10-2018 AMK58_19005 60831b3919bfda41681b3720f7ae9a54 483 Pfam PF02637 GatB domain 336 481 3.9E-55 T 11-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 AMK58_19005 60831b3919bfda41681b3720f7ae9a54 483 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 10 482 37.598 T 11-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 AMK58_19005 60831b3919bfda41681b3720f7ae9a54 483 SUPERFAMILY SSF55931 12 303 1.77E-114 T 11-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 AMK58_19005 60831b3919bfda41681b3720f7ae9a54 483 Gene3D G3DSA:1.10.10.410 421 483 6.6E-26 T 11-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal AMK58_12745 1fb4e65610fa5ef2e6de6ef7f7cf2778 366 SUPERFAMILY SSF100950 2 353 2.58E-108 T 11-10-2018 IPR037171 NagB/RpiA transferase-like AMK58_12745 1fb4e65610fa5ef2e6de6ef7f7cf2778 366 Gene3D G3DSA:1.20.120.1840 8 191 4.5E-51 T 11-10-2018 AMK58_12745 1fb4e65610fa5ef2e6de6ef7f7cf2778 366 Pfam PF01008 Initiation factor 2 subunit family 52 350 1.3E-55 T 11-10-2018 IPR000649 Initiation factor 2B-related GO:0044237 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174 AMK58_12745 1fb4e65610fa5ef2e6de6ef7f7cf2778 366 Hamap MF_01678 Putative methylthioribose-1-phosphate isomerase [mtnA]. 7 360 35.991 T 11-10-2018 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 AMK58_12745 1fb4e65610fa5ef2e6de6ef7f7cf2778 366 TIGRFAM TIGR00524 eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 38 349 6.8E-87 T 11-10-2018 IPR011559 Initiation factor 2B alpha/beta/delta GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 AMK58_12745 1fb4e65610fa5ef2e6de6ef7f7cf2778 366 TIGRFAM TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 19 349 7.3E-123 T 11-10-2018 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 AMK58_12745 1fb4e65610fa5ef2e6de6ef7f7cf2778 366 Gene3D G3DSA:3.40.50.10470 192 357 7.9E-48 T 11-10-2018 AMK58_16140 b6011bfcd0b6d3a9ef8f93752415b924 680 Gene3D G3DSA:3.40.50.720 394 673 5.6E-51 T 11-10-2018 AMK58_16140 b6011bfcd0b6d3a9ef8f93752415b924 680 SUPERFAMILY SSF51905 368 678 7.51E-32 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_16140 b6011bfcd0b6d3a9ef8f93752415b924 680 Gene3D G3DSA:3.50.50.60 488 613 5.6E-51 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_16140 b6011bfcd0b6d3a9ef8f93752415b924 680 Pfam PF13450 NAD(P)-binding Rossmann-like domain 396 432 3.5E-7 T 11-10-2018 AMK58_16140 b6011bfcd0b6d3a9ef8f93752415b924 680 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 14 347 2.3E-48 T 11-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 AMK58_16140 b6011bfcd0b6d3a9ef8f93752415b924 680 SUPERFAMILY SSF51395 12 373 1.65E-79 T 11-10-2018 AMK58_16140 b6011bfcd0b6d3a9ef8f93752415b924 680 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 606 620 5.4E-5 T 11-10-2018 AMK58_16140 b6011bfcd0b6d3a9ef8f93752415b924 680 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 393 415 5.4E-5 T 11-10-2018 AMK58_16140 b6011bfcd0b6d3a9ef8f93752415b924 680 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 654 661 5.4E-5 T 11-10-2018 AMK58_16140 b6011bfcd0b6d3a9ef8f93752415b924 680 Gene3D G3DSA:3.20.20.70 12 381 1.2E-84 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_16140 b6011bfcd0b6d3a9ef8f93752415b924 680 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 605 621 5.1E-7 T 11-10-2018 AMK58_16140 b6011bfcd0b6d3a9ef8f93752415b924 680 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 394 413 5.1E-7 T 11-10-2018 AMK58_16140 b6011bfcd0b6d3a9ef8f93752415b924 680 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 476 494 5.1E-7 T 11-10-2018 AMK58_21950 f5969b8269549a88b34e840792aa5b7d 536 Gene3D G3DSA:3.10.105.10 288 509 3.0E-132 T 11-10-2018 AMK58_21950 f5969b8269549a88b34e840792aa5b7d 536 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 82 435 1.5E-95 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain AMK58_21950 f5969b8269549a88b34e840792aa5b7d 536 Gene3D G3DSA:3.90.76.10 63 200 3.0E-132 T 11-10-2018 AMK58_21950 f5969b8269549a88b34e840792aa5b7d 536 PIRSF PIRSF002741 2 536 1.0E-157 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMK58_21950 f5969b8269549a88b34e840792aa5b7d 536 Gene3D G3DSA:3.40.190.10 201 519 3.0E-132 T 11-10-2018 AMK58_21950 f5969b8269549a88b34e840792aa5b7d 536 SUPERFAMILY SSF53850 37 529 4.71E-140 T 11-10-2018 AMK58_11160 0bad1193d8b79e1ed258885a19d7718a 204 SUPERFAMILY SSF89392 24 187 5.1E-11 T 11-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX AMK58_11160 0bad1193d8b79e1ed258885a19d7718a 204 Gene3D G3DSA:2.50.20.10 20 193 2.3E-17 T 11-10-2018 AMK58_16815 646d9a77b362e7240d0c5aa0d3543ecf 211 Gene3D G3DSA:1.10.10.10 9 86 2.9E-9 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_16815 646d9a77b362e7240d0c5aa0d3543ecf 211 SUPERFAMILY SSF46785 16 86 1.77E-12 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_16815 646d9a77b362e7240d0c5aa0d3543ecf 211 SUPERFAMILY SSF46785 90 165 3.63E-25 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_16815 646d9a77b362e7240d0c5aa0d3543ecf 211 Pfam PF04079 Segregation and condensation complex subunit ScpB 20 173 2.3E-47 T 11-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 AMK58_16815 646d9a77b362e7240d0c5aa0d3543ecf 211 Gene3D G3DSA:1.10.10.10 87 184 8.4E-34 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_16815 646d9a77b362e7240d0c5aa0d3543ecf 211 PIRSF PIRSF019345 2 207 1.7E-48 T 11-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 AMK58_16815 646d9a77b362e7240d0c5aa0d3543ecf 211 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 21 177 1.4E-30 T 11-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 AMK58_15010 2e0756c9d029c4f6b791c0df6183f850 162 Gene3D G3DSA:2.60.120.10 16 125 6.0E-31 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_15010 2e0756c9d029c4f6b791c0df6183f850 162 SUPERFAMILY SSF51182 26 125 5.09E-19 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily AMK58_15010 2e0756c9d029c4f6b791c0df6183f850 162 Pfam PF05899 Protein of unknown function (DUF861) 52 123 8.6E-22 T 11-10-2018 IPR008579 Domain of unknown function DUF861, cupin-3 KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 AMK58_13990 5a6ed526105b10655f480a96e7cc3bde 554 Gene3D G3DSA:1.20.1560.10 1 306 5.7E-8 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMK58_13990 5a6ed526105b10655f480a96e7cc3bde 554 SUPERFAMILY SSF90123 4 305 4.58E-15 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMK58_13990 5a6ed526105b10655f480a96e7cc3bde 554 ProSitePatterns PS00211 ABC transporters family signature. 461 475 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_13990 5a6ed526105b10655f480a96e7cc3bde 554 Pfam PF00005 ABC transporter 355 488 7.3E-24 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_13990 5a6ed526105b10655f480a96e7cc3bde 554 SMART SM00382 361 537 3.3E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_13990 5a6ed526105b10655f480a96e7cc3bde 554 SUPERFAMILY SSF52540 349 544 8.51E-35 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_13990 5a6ed526105b10655f480a96e7cc3bde 554 Gene3D G3DSA:3.40.50.300 330 548 9.6E-33 T 11-10-2018 AMK58_02945 e7ec987fb074797db98659e0cb510edb 777 Gene3D G3DSA:1.10.8.500 160 206 1.9E-12 T 11-10-2018 AMK58_02945 e7ec987fb074797db98659e0cb510edb 777 Gene3D G3DSA:3.30.450.20 207 342 4.4E-16 T 11-10-2018 AMK58_02945 e7ec987fb074797db98659e0cb510edb 777 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 214 344 5.1E-12 T 11-10-2018 IPR000014 PAS domain AMK58_02945 e7ec987fb074797db98659e0cb510edb 777 SMART SM00304 159 212 1.7E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_02945 e7ec987fb074797db98659e0cb510edb 777 Pfam PF00563 EAL domain 525 759 8.3E-72 T 11-10-2018 IPR001633 EAL domain AMK58_02945 e7ec987fb074797db98659e0cb510edb 777 Pfam PF00990 Diguanylate cyclase, GGDEF domain 348 504 1.5E-45 T 11-10-2018 IPR000160 GGDEF domain AMK58_02945 e7ec987fb074797db98659e0cb510edb 777 SMART SM00091 215 281 7.1E-7 T 11-10-2018 IPR000014 PAS domain AMK58_02945 e7ec987fb074797db98659e0cb510edb 777 Gene3D G3DSA:3.20.20.450 520 772 3.1E-100 T 11-10-2018 IPR035919 EAL domain superfamily AMK58_02945 e7ec987fb074797db98659e0cb510edb 777 SUPERFAMILY SSF141868 525 769 1.05E-86 T 11-10-2018 IPR035919 EAL domain superfamily AMK58_02945 e7ec987fb074797db98659e0cb510edb 777 Gene3D G3DSA:3.30.70.270 343 515 5.7E-53 T 11-10-2018 AMK58_02945 e7ec987fb074797db98659e0cb510edb 777 SMART SM00267 337 509 7.5E-63 T 11-10-2018 IPR000160 GGDEF domain AMK58_02945 e7ec987fb074797db98659e0cb510edb 777 SUPERFAMILY SSF158472 161 207 8.5E-8 T 11-10-2018 AMK58_02945 e7ec987fb074797db98659e0cb510edb 777 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 346 506 9.2E-41 T 11-10-2018 IPR000160 GGDEF domain AMK58_02945 e7ec987fb074797db98659e0cb510edb 777 SUPERFAMILY SSF55073 353 511 6.2E-46 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_02945 e7ec987fb074797db98659e0cb510edb 777 Pfam PF08448 PAS fold 222 337 1.9E-9 T 11-10-2018 IPR013656 PAS fold-4 AMK58_02945 e7ec987fb074797db98659e0cb510edb 777 SUPERFAMILY SSF55785 226 344 1.65E-13 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_02945 e7ec987fb074797db98659e0cb510edb 777 SMART SM00052 519 764 1.7E-117 T 11-10-2018 IPR001633 EAL domain AMK58_16880 b2cca59b554066e415affeba7fe0725e 532 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 281 510 9.4E-81 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMK58_16880 b2cca59b554066e415affeba7fe0725e 532 Gene3D G3DSA:1.20.1640.10 366 525 1.7E-6 T 11-10-2018 AMK58_16880 b2cca59b554066e415affeba7fe0725e 532 Gene3D G3DSA:3.30.70.3400 155 355 1.1E-65 T 11-10-2018 AMK58_16880 b2cca59b554066e415affeba7fe0725e 532 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 2 531 45.331 T 11-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 AMK58_16880 b2cca59b554066e415affeba7fe0725e 532 Gene3D G3DSA:3.30.1360.200 212 349 1.1E-65 T 11-10-2018 AMK58_16880 b2cca59b554066e415affeba7fe0725e 532 Pfam PF07549 SecD/SecF GG Motif 41 64 5.6E-7 T 11-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site AMK58_16880 b2cca59b554066e415affeba7fe0725e 532 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 47 518 6.6E-142 T 11-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 AMK58_16880 b2cca59b554066e415affeba7fe0725e 532 SUPERFAMILY SSF82866 328 525 5.49E-41 T 11-10-2018 AMK58_16880 b2cca59b554066e415affeba7fe0725e 532 Pfam PF02355 Protein export membrane protein 352 517 9.5E-19 T 11-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial AMK58_22005 8c9e4ab148f68d738c6d6f311fb0dc32 315 SUPERFAMILY SSF51735 4 313 5.73E-89 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_22005 8c9e4ab148f68d738c6d6f311fb0dc32 315 Pfam PF16363 GDP-mannose 4,6 dehydratase 9 306 9.9E-55 T 11-10-2018 IPR016040 NAD(P)-binding domain AMK58_22005 8c9e4ab148f68d738c6d6f311fb0dc32 315 Gene3D G3DSA:3.40.50.720 7 297 5.5E-106 T 11-10-2018 AMK58_22005 8c9e4ab148f68d738c6d6f311fb0dc32 315 Gene3D G3DSA:3.90.25.10 187 310 5.5E-106 T 11-10-2018 AMK58_23195 6369010952089baccfbc9698bd7dd2f0 643 Gene3D G3DSA:3.40.50.12780 321 463 6.1E-35 T 11-10-2018 AMK58_23195 6369010952089baccfbc9698bd7dd2f0 643 SUPERFAMILY SSF56801 10 602 1.11E-100 T 11-10-2018 AMK58_23195 6369010952089baccfbc9698bd7dd2f0 643 Pfam PF00501 AMP-binding enzyme 19 468 2.7E-78 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMK58_23195 6369010952089baccfbc9698bd7dd2f0 643 ProSitePatterns PS00455 Putative AMP-binding domain signature. 191 202 - T 11-10-2018 IPR020845 AMP-binding, conserved site AMK58_23195 6369010952089baccfbc9698bd7dd2f0 643 Gene3D G3DSA:3.40.50.12780 3 307 6.3E-39 T 11-10-2018 AMK58_10545 559391e1fc00c403b9740f85a1e5d1e3 383 PIRSF PIRSF038994 2 382 4.9E-109 T 11-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 AMK58_10545 559391e1fc00c403b9740f85a1e5d1e3 383 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 153 167 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AMK58_10545 559391e1fc00c403b9740f85a1e5d1e3 383 Gene3D G3DSA:3.20.20.140 55 346 7.2E-126 T 11-10-2018 AMK58_10545 559391e1fc00c403b9740f85a1e5d1e3 383 Gene3D G3DSA:2.30.40.10 9 378 7.2E-126 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMK58_10545 559391e1fc00c403b9740f85a1e5d1e3 383 SUPERFAMILY SSF51338 1 53 2.88E-13 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMK58_10545 559391e1fc00c403b9740f85a1e5d1e3 383 Pfam PF01979 Amidohydrolase family 50 380 5.7E-18 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AMK58_10545 559391e1fc00c403b9740f85a1e5d1e3 383 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 3 379 3.0E-98 T 11-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 AMK58_10545 559391e1fc00c403b9740f85a1e5d1e3 383 SUPERFAMILY SSF51556 54 352 1.31E-96 T 11-10-2018 IPR032466 Metal-dependent hydrolase AMK58_08235 4329f2eb631f4a888e848719c7fed92b 162 Gene3D G3DSA:1.10.1660.10 8 83 1.6E-20 T 11-10-2018 AMK58_08235 4329f2eb631f4a888e848719c7fed92b 162 SUPERFAMILY SSF46955 15 85 8.24E-15 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily AMK58_08235 4329f2eb631f4a888e848719c7fed92b 162 Pfam PF13411 MerR HTH family regulatory protein 15 82 1.5E-23 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMK58_08235 4329f2eb631f4a888e848719c7fed92b 162 SMART SM00422 15 84 0.0015 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMK58_22345 68043966a59cb5be8ff040e17c7ab09f 331 Pfam PF08544 GHMP kinases C terminal 215 297 3.5E-6 T 11-10-2018 IPR013750 GHMP kinase, C-terminal domain AMK58_22345 68043966a59cb5be8ff040e17c7ab09f 331 TIGRFAM TIGR00144 beta_RFAP_syn: beta-ribofuranosylaminobenzene 5'-phosphate synthase family 11 317 1.9E-47 T 11-10-2018 IPR004422 GHMP kinase group 1 KEGG: 00790+2.4.2.54|MetaCyc: PWY-6148 AMK58_22345 68043966a59cb5be8ff040e17c7ab09f 331 PIRSF PIRSF004884 7 322 2.7E-86 T 11-10-2018 IPR004422 GHMP kinase group 1 KEGG: 00790+2.4.2.54|MetaCyc: PWY-6148 AMK58_22345 68043966a59cb5be8ff040e17c7ab09f 331 Gene3D G3DSA:3.30.230.10 12 150 2.5E-10 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMK58_22345 68043966a59cb5be8ff040e17c7ab09f 331 SUPERFAMILY SSF54211 12 154 2.88E-19 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMK58_22345 68043966a59cb5be8ff040e17c7ab09f 331 Pfam PF00288 GHMP kinases N terminal domain 85 138 6.2E-6 T 11-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 AMK58_14875 8922681846560d2fe24408ae19160e03 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 66 1.1E-13 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_14875 8922681846560d2fe24408ae19160e03 199 Gene3D G3DSA:1.10.357.10 66 195 1.8E-10 T 11-10-2018 AMK58_14875 8922681846560d2fe24408ae19160e03 199 SUPERFAMILY SSF46689 9 89 4.57E-14 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_14875 8922681846560d2fe24408ae19160e03 199 SUPERFAMILY SSF48498 88 191 5.93E-10 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMK58_14875 8922681846560d2fe24408ae19160e03 199 Gene3D G3DSA:1.10.10.60 1 65 7.3E-12 T 11-10-2018 AMK58_26470 b6bcf60ab35982ef601b6968a44b09eb 225 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 53 76 3.3E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_26470 b6bcf60ab35982ef601b6968a44b09eb 225 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 45 3.3E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_26470 b6bcf60ab35982ef601b6968a44b09eb 225 Gene3D G3DSA:1.10.357.10 20 222 3.9E-55 T 11-10-2018 AMK58_26470 b6bcf60ab35982ef601b6968a44b09eb 225 SUPERFAMILY SSF46689 20 97 2.99E-20 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_26470 b6bcf60ab35982ef601b6968a44b09eb 225 SUPERFAMILY SSF48498 101 219 2.3E-9 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMK58_26470 b6bcf60ab35982ef601b6968a44b09eb 225 Pfam PF00440 Bacterial regulatory proteins, tetR family 32 78 2.9E-16 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_26470 b6bcf60ab35982ef601b6968a44b09eb 225 Pfam PF14246 AefR-like transcriptional repressor, C-terminal region 165 217 7.4E-10 T 11-10-2018 IPR039536 Transcriptional regulator TetR, C-terminal, Proteobacteria type AMK58_14270 5cd9d46665cc816dcc06cf685346b91b 263 SMART SM00382 34 223 1.3E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_14270 5cd9d46665cc816dcc06cf685346b91b 263 SUPERFAMILY SSF52540 11 236 1.63E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_14270 5cd9d46665cc816dcc06cf685346b91b 263 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_14270 5cd9d46665cc816dcc06cf685346b91b 263 Gene3D G3DSA:3.40.50.300 3 258 8.1E-70 T 11-10-2018 AMK58_14270 5cd9d46665cc816dcc06cf685346b91b 263 Pfam PF00005 ABC transporter 25 174 5.2E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_09905 072f3640f8e80ee4b6760c1e2958b401 358 SMART SM00257 306 355 0.0079 T 11-10-2018 IPR018392 LysM domain AMK58_09905 072f3640f8e80ee4b6760c1e2958b401 358 Pfam PF01476 LysM domain 308 352 1.4E-9 T 11-10-2018 IPR018392 LysM domain AMK58_09905 072f3640f8e80ee4b6760c1e2958b401 358 SUPERFAMILY SSF54106 306 356 3.53E-5 T 11-10-2018 AMK58_09905 072f3640f8e80ee4b6760c1e2958b401 358 Gene3D G3DSA:3.10.350.10 306 353 1.2E-12 T 11-10-2018 IPR036779 LysM domain superfamily AMK58_13215 dc5a1c33fb9e7d72ac1ebd0977538826 529 SUPERFAMILY SSF109604 334 523 8.9E-34 T 11-10-2018 AMK58_13215 dc5a1c33fb9e7d72ac1ebd0977538826 529 Pfam PF01966 HD domain 347 482 8.5E-15 T 11-10-2018 IPR006674 HD domain AMK58_13215 dc5a1c33fb9e7d72ac1ebd0977538826 529 Gene3D G3DSA:1.10.3210.10 322 525 2.1E-68 T 11-10-2018 AMK58_13215 dc5a1c33fb9e7d72ac1ebd0977538826 529 SMART SM00471 342 492 5.4E-9 T 11-10-2018 IPR003607 HD/PDEase domain AMK58_13215 dc5a1c33fb9e7d72ac1ebd0977538826 529 Pfam PF00072 Response regulator receiver domain 40 148 1.3E-6 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_13215 dc5a1c33fb9e7d72ac1ebd0977538826 529 Gene3D G3DSA:3.40.50.2300 38 177 8.1E-14 T 11-10-2018 AMK58_13215 dc5a1c33fb9e7d72ac1ebd0977538826 529 Pfam PF11849 Domain of unknown function (DUF3369) 160 324 4.9E-39 T 11-10-2018 IPR021800 Domain of unknown function DUF3369 AMK58_13215 dc5a1c33fb9e7d72ac1ebd0977538826 529 SUPERFAMILY SSF52172 36 185 2.99E-13 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_22200 965d377cee5ef5420972f25f0297f5a2 567 Gene3D G3DSA:1.20.1480.50 176 273 1.5E-13 T 11-10-2018 AMK58_22200 965d377cee5ef5420972f25f0297f5a2 567 SMART SM00283 307 561 7.0E-44 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_22200 965d377cee5ef5420972f25f0297f5a2 567 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 384 512 9.5E-28 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_22200 965d377cee5ef5420972f25f0297f5a2 567 SMART SM00304 217 270 2.6E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_22200 965d377cee5ef5420972f25f0297f5a2 567 SUPERFAMILY SSF58104 237 560 1.11E-59 T 11-10-2018 AMK58_22200 965d377cee5ef5420972f25f0297f5a2 567 Pfam PF12729 Four helix bundle sensory module for signal transduction 14 185 6.6E-7 T 11-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain AMK58_22200 965d377cee5ef5420972f25f0297f5a2 567 Pfam PF00672 HAMP domain 219 261 4.1E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_22200 965d377cee5ef5420972f25f0297f5a2 567 Gene3D G3DSA:1.10.287.950 274 561 3.9E-52 T 11-10-2018 AMK58_11320 f70f1dcb274e83b2057c89b239c7689d 352 ProSitePatterns PS00483 Dihydroorotase signature 2. 249 260 - T 11-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMK58_11320 f70f1dcb274e83b2057c89b239c7689d 352 PIRSF PIRSF001237 2 350 1.7E-134 T 11-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMK58_11320 f70f1dcb274e83b2057c89b239c7689d 352 ProSitePatterns PS00482 Dihydroorotase signature 1. 13 21 - T 11-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMK58_11320 f70f1dcb274e83b2057c89b239c7689d 352 SUPERFAMILY SSF51556 4 346 4.66E-139 T 11-10-2018 IPR032466 Metal-dependent hydrolase AMK58_11320 f70f1dcb274e83b2057c89b239c7689d 352 TIGRFAM TIGR00856 pyrC_dimer: dihydroorotase, homodimeric type 6 346 3.2E-134 T 11-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMK58_11320 f70f1dcb274e83b2057c89b239c7689d 352 Pfam PF01979 Amidohydrolase family 13 307 6.8E-16 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AMK58_11320 f70f1dcb274e83b2057c89b239c7689d 352 Gene3D G3DSA:3.20.20.140 5 348 8.8E-104 T 11-10-2018 AMK58_11320 f70f1dcb274e83b2057c89b239c7689d 352 Hamap MF_00219 Dihydroorotase [pyrC]. 4 348 45.925 T 11-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMK58_03490 1df0892ba8dfd9b7f1f0be9cab0b862b 400 SUPERFAMILY SSF53822 59 364 1.04E-30 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMK58_03490 1df0892ba8dfd9b7f1f0be9cab0b862b 400 Gene3D G3DSA:3.40.50.2300 53 248 8.0E-11 T 11-10-2018 AMK58_03490 1df0892ba8dfd9b7f1f0be9cab0b862b 400 Gene3D G3DSA:3.40.50.2300 269 365 6.0E-6 T 11-10-2018 AMK58_03490 1df0892ba8dfd9b7f1f0be9cab0b862b 400 Pfam PF13458 Periplasmic binding protein 64 218 5.2E-9 T 11-10-2018 IPR028081 Leucine-binding protein domain AMK58_03490 1df0892ba8dfd9b7f1f0be9cab0b862b 400 TIGRFAM TIGR03863 PQQ_ABC_bind: ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system 54 399 2.8E-152 T 11-10-2018 IPR022478 ABC transporter, substrate-binding protein, PQQ-dependent alcohol dehydrogenase system AMK58_03490 1df0892ba8dfd9b7f1f0be9cab0b862b 400 Gene3D G3DSA:3.40.50.2300 277 361 6.0E-6 T 11-10-2018 AMK58_08555 4d9c7ce6435a62f6a12a486944c9c541 1208 Gene3D G3DSA:3.40.50.300 493 1001 1.1E-223 T 11-10-2018 AMK58_08555 4d9c7ce6435a62f6a12a486944c9c541 1208 SUPERFAMILY SSF52540 10 354 1.31E-85 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_08555 4d9c7ce6435a62f6a12a486944c9c541 1208 SUPERFAMILY SSF52540 795 1003 1.38E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_08555 4d9c7ce6435a62f6a12a486944c9c541 1208 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 150 1097 0.0 T 11-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 AMK58_08555 4d9c7ce6435a62f6a12a486944c9c541 1208 Gene3D G3DSA:3.40.50.11180 41 302 1.2E-85 T 11-10-2018 AMK58_08555 4d9c7ce6435a62f6a12a486944c9c541 1208 Gene3D G3DSA:3.30.2060.10 132 218 1.2E-85 T 11-10-2018 AMK58_08555 4d9c7ce6435a62f6a12a486944c9c541 1208 SUPERFAMILY SSF52540 362 482 5.84E-19 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_08555 4d9c7ce6435a62f6a12a486944c9c541 1208 SMART SM00982 1024 1124 5.6E-43 T 11-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 AMK58_08555 4d9c7ce6435a62f6a12a486944c9c541 1208 SUPERFAMILY SSF143517 1013 1163 3.79E-42 T 11-10-2018 IPR037235 TRCF-like, C-terminal domain AMK58_08555 4d9c7ce6435a62f6a12a486944c9c541 1208 SMART SM01058 493 589 4.6E-42 T 11-10-2018 IPR003711 CarD-like/TRCF domain AMK58_08555 4d9c7ce6435a62f6a12a486944c9c541 1208 Pfam PF00271 Helicase conserved C-terminal domain 818 922 9.4E-19 T 11-10-2018 IPR001650 Helicase, C-terminal AMK58_08555 4d9c7ce6435a62f6a12a486944c9c541 1208 SUPERFAMILY SSF141259 485 561 1.96E-21 T 11-10-2018 IPR036101 CarD-like/TRCF domain superfamily AMK58_08555 4d9c7ce6435a62f6a12a486944c9c541 1208 Pfam PF00270 DEAD/DEAH box helicase 618 779 3.2E-16 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMK58_08555 4d9c7ce6435a62f6a12a486944c9c541 1208 Gene3D G3DSA:2.30.30.840 497 554 1.1E-223 T 11-10-2018 AMK58_08555 4d9c7ce6435a62f6a12a486944c9c541 1208 Gene3D G3DSA:3.90.1150.50 1020 1165 4.0E-40 T 11-10-2018 IPR037235 TRCF-like, C-terminal domain AMK58_08555 4d9c7ce6435a62f6a12a486944c9c541 1208 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 34 1125 27.868 T 11-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 AMK58_08555 4d9c7ce6435a62f6a12a486944c9c541 1208 SUPERFAMILY SSF52540 537 797 5.63E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_08555 4d9c7ce6435a62f6a12a486944c9c541 1208 Pfam PF02559 CarD-like/TRCF domain 495 587 2.9E-25 T 11-10-2018 IPR003711 CarD-like/TRCF domain AMK58_08555 4d9c7ce6435a62f6a12a486944c9c541 1208 Pfam PF03461 TRCF domain 1027 1118 5.9E-27 T 11-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 AMK58_08555 4d9c7ce6435a62f6a12a486944c9c541 1208 Gene3D G3DSA:3.40.50.300 555 794 1.1E-223 T 11-10-2018 AMK58_08555 4d9c7ce6435a62f6a12a486944c9c541 1208 SMART SM00490 839 923 5.5E-20 T 11-10-2018 IPR001650 Helicase, C-terminal AMK58_08555 4d9c7ce6435a62f6a12a486944c9c541 1208 SMART SM00487 613 803 4.6E-33 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMK58_17500 e77695471f411cd27112863ace77b8d9 677 Pfam PF00361 Proton-conducting membrane transporter 132 419 2.4E-52 T 11-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_17500 e77695471f411cd27112863ace77b8d9 677 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 389 415 2.6E-5 T 11-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_17500 e77695471f411cd27112863ace77b8d9 677 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 238 262 2.6E-5 T 11-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_18360 f33dabff2760d3a8eec668ca6ab6ed0e 360 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 251 338 2.6E-26 T 11-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 AMK58_18360 f33dabff2760d3a8eec668ca6ab6ed0e 360 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 113 190 9.4E-16 T 11-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 AMK58_18360 f33dabff2760d3a8eec668ca6ab6ed0e 360 SUPERFAMILY SSF53901 9 339 2.56E-48 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_18360 f33dabff2760d3a8eec668ca6ab6ed0e 360 Gene3D G3DSA:3.40.47.10 1 348 1.6E-112 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_25620 7bd7a378a5ab9523e3158f13963cc9ab 880 Gene3D G3DSA:3.30.450.20 362 483 1.1E-41 T 11-10-2018 AMK58_25620 7bd7a378a5ab9523e3158f13963cc9ab 880 SMART SM00448 762 876 2.4E-16 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_25620 7bd7a378a5ab9523e3158f13963cc9ab 880 SMART SM00091 366 432 4.5E-14 T 11-10-2018 IPR000014 PAS domain AMK58_25620 7bd7a378a5ab9523e3158f13963cc9ab 880 Gene3D G3DSA:3.40.50.2300 754 880 3.2E-19 T 11-10-2018 AMK58_25620 7bd7a378a5ab9523e3158f13963cc9ab 880 Pfam PF00989 PAS fold 367 479 1.6E-17 T 11-10-2018 IPR013767 PAS fold GO:0006355 AMK58_25620 7bd7a378a5ab9523e3158f13963cc9ab 880 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 364 489 5.2E-39 T 11-10-2018 IPR000014 PAS domain AMK58_25620 7bd7a378a5ab9523e3158f13963cc9ab 880 SMART SM00387 632 743 1.1E-29 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_25620 7bd7a378a5ab9523e3158f13963cc9ab 880 SUPERFAMILY SSF55874 578 741 5.24E-39 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_25620 7bd7a378a5ab9523e3158f13963cc9ab 880 Pfam PF00512 His Kinase A (phospho-acceptor) domain 523 588 2.1E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_25620 7bd7a378a5ab9523e3158f13963cc9ab 880 SUPERFAMILY SSF52172 764 879 3.27E-21 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_25620 7bd7a378a5ab9523e3158f13963cc9ab 880 SMART SM00388 523 588 3.9E-12 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_25620 7bd7a378a5ab9523e3158f13963cc9ab 880 PRINTS PR00344 Bacterial sensor protein C-terminal signature 686 696 4.7E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_25620 7bd7a378a5ab9523e3158f13963cc9ab 880 PRINTS PR00344 Bacterial sensor protein C-terminal signature 668 682 4.7E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_25620 7bd7a378a5ab9523e3158f13963cc9ab 880 PRINTS PR00344 Bacterial sensor protein C-terminal signature 727 740 4.7E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_25620 7bd7a378a5ab9523e3158f13963cc9ab 880 PRINTS PR00344 Bacterial sensor protein C-terminal signature 703 721 4.7E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_25620 7bd7a378a5ab9523e3158f13963cc9ab 880 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 633 740 2.2E-19 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_25620 7bd7a378a5ab9523e3158f13963cc9ab 880 SUPERFAMILY SSF47384 509 588 8.44E-14 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_25620 7bd7a378a5ab9523e3158f13963cc9ab 880 Pfam PF00072 Response regulator receiver domain 764 876 2.7E-11 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_25620 7bd7a378a5ab9523e3158f13963cc9ab 880 Gene3D G3DSA:1.10.287.130 484 586 5.1E-15 T 11-10-2018 AMK58_25620 7bd7a378a5ab9523e3158f13963cc9ab 880 Gene3D G3DSA:3.30.450.20 41 183 1.4E-12 T 11-10-2018 AMK58_25620 7bd7a378a5ab9523e3158f13963cc9ab 880 Gene3D G3DSA:3.30.565.10 595 745 1.6E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_25620 7bd7a378a5ab9523e3158f13963cc9ab 880 Pfam PF02743 Cache domain 45 269 1.5E-12 T 11-10-2018 IPR033479 Double Cache domain 1 AMK58_25620 7bd7a378a5ab9523e3158f13963cc9ab 880 SUPERFAMILY SSF55785 377 489 1.48E-31 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_10820 7d68a804b6470e940196d3fb69cd1f38 451 Gene3D G3DSA:1.10.490.10 10 166 8.9E-16 T 11-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 AMK58_10820 7d68a804b6470e940196d3fb69cd1f38 451 SMART SM00283 191 445 9.2E-49 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_10820 7d68a804b6470e940196d3fb69cd1f38 451 SUPERFAMILY SSF58104 154 444 1.44E-57 T 11-10-2018 AMK58_10820 7d68a804b6470e940196d3fb69cd1f38 451 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 257 415 3.5E-28 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_10820 7d68a804b6470e940196d3fb69cd1f38 451 SUPERFAMILY SSF46458 10 159 6.04E-8 T 11-10-2018 IPR009050 Globin-like superfamily AMK58_10820 7d68a804b6470e940196d3fb69cd1f38 451 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 212 241 1.8E-20 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_10820 7d68a804b6470e940196d3fb69cd1f38 451 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 289 316 1.8E-20 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_10820 7d68a804b6470e940196d3fb69cd1f38 451 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 366 395 1.8E-20 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_10820 7d68a804b6470e940196d3fb69cd1f38 451 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 318 347 1.8E-20 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_10820 7d68a804b6470e940196d3fb69cd1f38 451 Pfam PF11563 Protoglobin 12 167 7.5E-14 T 11-10-2018 AMK58_10820 7d68a804b6470e940196d3fb69cd1f38 451 Gene3D G3DSA:1.10.287.950 167 445 3.3E-51 T 11-10-2018 AMK58_25750 bb3b916085ef79d77123cfc4cace335b 290 SUPERFAMILY SSF46785 35 105 1.14E-13 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_25750 bb3b916085ef79d77123cfc4cace335b 290 Pfam PF09339 IclR helix-turn-helix domain 35 83 3.8E-16 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMK58_25750 bb3b916085ef79d77123cfc4cace335b 290 Pfam PF01614 Bacterial transcriptional regulator 153 274 1.6E-28 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal AMK58_25750 bb3b916085ef79d77123cfc4cace335b 290 Gene3D G3DSA:1.10.10.10 31 101 1.0E-15 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_25750 bb3b916085ef79d77123cfc4cace335b 290 Gene3D G3DSA:3.30.450.40 108 284 1.7E-51 T 11-10-2018 IPR029016 GAF-like domain superfamily AMK58_25750 bb3b916085ef79d77123cfc4cace335b 290 SUPERFAMILY SSF55781 114 278 2.68E-44 T 11-10-2018 AMK58_25750 bb3b916085ef79d77123cfc4cace335b 290 SMART SM00346 36 122 1.5E-5 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMK58_17405 83ad200a5f91c44642cc7c27af92f730 329 Gene3D G3DSA:3.40.50.150 19 221 2.1E-10 T 11-10-2018 AMK58_17405 83ad200a5f91c44642cc7c27af92f730 329 SUPERFAMILY SSF53335 61 198 3.61E-13 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_17405 83ad200a5f91c44642cc7c27af92f730 329 Pfam PF09243 Mitochondrial small ribosomal subunit Rsm22 50 321 1.4E-99 T 11-10-2018 IPR015324 Ribosomal protein Rsm22-like GO:0006412|GO:0008168 AMK58_02995 975aa9460bcdf9d677fd501c87bd4560 160 Pfam PF07486 Cell Wall Hydrolase 41 156 4.1E-18 T 11-10-2018 IPR011105 Cell wall hydrolase, SleB GO:0016787 AMK58_02995 975aa9460bcdf9d677fd501c87bd4560 160 Gene3D G3DSA:1.10.10.2520 26 119 2.6E-10 T 11-10-2018 AMK58_28665 848ecf1120b8d5037297603037a639ac 388 SUPERFAMILY SSF52172 271 387 1.05E-20 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_28665 848ecf1120b8d5037297603037a639ac 388 Pfam PF00072 Response regulator receiver domain 271 383 1.6E-11 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_28665 848ecf1120b8d5037297603037a639ac 388 PRINTS PR00344 Bacterial sensor protein C-terminal signature 191 201 7.1E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_28665 848ecf1120b8d5037297603037a639ac 388 PRINTS PR00344 Bacterial sensor protein C-terminal signature 232 245 7.1E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_28665 848ecf1120b8d5037297603037a639ac 388 PRINTS PR00344 Bacterial sensor protein C-terminal signature 208 226 7.1E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_28665 848ecf1120b8d5037297603037a639ac 388 PRINTS PR00344 Bacterial sensor protein C-terminal signature 173 187 7.1E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_28665 848ecf1120b8d5037297603037a639ac 388 Gene3D G3DSA:1.10.287.130 2 89 6.0E-18 T 11-10-2018 AMK58_28665 848ecf1120b8d5037297603037a639ac 388 Gene3D G3DSA:3.30.565.10 91 250 1.8E-37 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_28665 848ecf1120b8d5037297603037a639ac 388 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 138 247 1.2E-23 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_28665 848ecf1120b8d5037297603037a639ac 388 SMART SM00448 268 382 2.8E-12 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_28665 848ecf1120b8d5037297603037a639ac 388 SMART SM00388 26 91 1.4E-13 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_28665 848ecf1120b8d5037297603037a639ac 388 Pfam PF00512 His Kinase A (phospho-acceptor) domain 26 89 3.0E-12 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_28665 848ecf1120b8d5037297603037a639ac 388 SUPERFAMILY SSF47384 10 91 5.89E-15 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_28665 848ecf1120b8d5037297603037a639ac 388 SUPERFAMILY SSF55874 80 247 1.57E-41 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_28665 848ecf1120b8d5037297603037a639ac 388 SMART SM00387 137 248 1.7E-29 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_28665 848ecf1120b8d5037297603037a639ac 388 Gene3D G3DSA:3.40.50.2300 262 388 4.1E-19 T 11-10-2018 AMK58_16010 98e7308831cac4c53bd9e28775d5f217 388 Pfam PF01612 3'-5' exonuclease 3 169 1.6E-34 T 11-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AMK58_16010 98e7308831cac4c53bd9e28775d5f217 388 Gene3D G3DSA:3.30.420.10 1 190 1.8E-61 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMK58_16010 98e7308831cac4c53bd9e28775d5f217 388 SUPERFAMILY SSF53098 2 203 5.09E-66 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMK58_16010 98e7308831cac4c53bd9e28775d5f217 388 TIGRFAM TIGR01388 rnd: ribonuclease D 3 364 1.1E-129 T 11-10-2018 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 AMK58_16010 98e7308831cac4c53bd9e28775d5f217 388 SMART SM00474 1 170 1.2E-33 T 11-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AMK58_16010 98e7308831cac4c53bd9e28775d5f217 388 Gene3D G3DSA:1.10.150.80 196 291 4.8E-22 T 11-10-2018 AMK58_16010 98e7308831cac4c53bd9e28775d5f217 388 Pfam PF00570 HRDC domain 212 279 8.0E-20 T 11-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 AMK58_16010 98e7308831cac4c53bd9e28775d5f217 388 SMART SM00341 208 289 6.2E-15 T 11-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 AMK58_16010 98e7308831cac4c53bd9e28775d5f217 388 SUPERFAMILY SSF47819 300 368 2.62E-14 T 11-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 AMK58_16010 98e7308831cac4c53bd9e28775d5f217 388 Hamap MF_01899 Ribonuclease D [rnd]. 1 365 47.489 T 11-10-2018 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 AMK58_16010 98e7308831cac4c53bd9e28775d5f217 388 SUPERFAMILY SSF47819 190 299 3.36E-27 T 11-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 AMK58_17075 4e22399a91d7b68dd143d9cc00996f5e 942 Pfam PF00384 Molybdopterin oxidoreductase 293 724 7.8E-71 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_17075 4e22399a91d7b68dd143d9cc00996f5e 942 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 237 288 4.4E-14 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_17075 4e22399a91d7b68dd143d9cc00996f5e 942 SUPERFAMILY SSF50692 792 920 6.33E-37 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily AMK58_17075 4e22399a91d7b68dd143d9cc00996f5e 942 SUPERFAMILY SSF53706 237 759 3.66E-183 T 11-10-2018 AMK58_17075 4e22399a91d7b68dd143d9cc00996f5e 942 Gene3D G3DSA:3.30.70.20 145 227 1.0E-23 T 11-10-2018 AMK58_17075 4e22399a91d7b68dd143d9cc00996f5e 942 SMART SM00926 236 290 1.1E-13 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_17075 4e22399a91d7b68dd143d9cc00996f5e 942 SUPERFAMILY SSF54292 18 91 1.13E-19 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMK58_17075 4e22399a91d7b68dd143d9cc00996f5e 942 Gene3D G3DSA:3.10.20.740 18 139 5.5E-39 T 11-10-2018 AMK58_17075 4e22399a91d7b68dd143d9cc00996f5e 942 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 100 139 5.5E-17 T 11-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_17075 4e22399a91d7b68dd143d9cc00996f5e 942 Gene3D G3DSA:2.20.25.90 237 289 6.0E-15 T 11-10-2018 AMK58_17075 4e22399a91d7b68dd143d9cc00996f5e 942 SUPERFAMILY SSF54862 93 232 1.42E-38 T 11-10-2018 AMK58_17075 4e22399a91d7b68dd143d9cc00996f5e 942 Pfam PF00037 4Fe-4S binding domain 206 223 1.7E-5 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMK58_17075 4e22399a91d7b68dd143d9cc00996f5e 942 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 209 220 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMK58_17075 4e22399a91d7b68dd143d9cc00996f5e 942 Gene3D G3DSA:3.40.228.10 373 580 2.5E-166 T 11-10-2018 AMK58_17075 4e22399a91d7b68dd143d9cc00996f5e 942 Gene3D G3DSA:3.40.50.740 298 767 2.5E-166 T 11-10-2018 AMK58_17075 4e22399a91d7b68dd143d9cc00996f5e 942 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 17 93 6.5E-25 T 11-10-2018 AMK58_17075 4e22399a91d7b68dd143d9cc00996f5e 942 SMART SM00929 100 140 4.1E-19 T 11-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_17075 4e22399a91d7b68dd143d9cc00996f5e 942 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 850 877 - T 11-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 AMK58_17075 4e22399a91d7b68dd143d9cc00996f5e 942 TIGRFAM TIGR01591 Fdh-alpha: formate dehydrogenase, alpha subunit 241 920 6.5E-272 T 11-10-2018 IPR006478 Formate dehydrogenase, alpha subunit GO:0008863|GO:0015942|GO:0055114 KEGG: 00630+1.17.1.9|KEGG: 00680+1.17.1.9|MetaCyc: PWY-1881|MetaCyc: PWY-5497|MetaCyc: PWY-6696|MetaCyc: PWY-7985 AMK58_17075 4e22399a91d7b68dd143d9cc00996f5e 942 PIRSF PIRSF036643 14 939 0.0 T 11-10-2018 AMK58_17075 4e22399a91d7b68dd143d9cc00996f5e 942 Pfam PF01568 Molydopterin dinucleotide binding domain 812 916 2.7E-25 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 AMK58_17075 4e22399a91d7b68dd143d9cc00996f5e 942 Gene3D G3DSA:2.40.40.20 810 922 4.1E-33 T 11-10-2018 AMK58_20865 a283d0072a5d912fb436acd4baacf00c 228 Gene3D G3DSA:4.10.860.20 181 228 6.8E-16 T 11-10-2018 AMK58_20865 a283d0072a5d912fb436acd4baacf00c 228 SMART SM00702 2 178 5.5E-14 T 11-10-2018 IPR006620 Prolyl 4-hydroxylase, alpha subunit GO:0005506|GO:0016705|GO:0031418|GO:0055114 AMK58_20865 a283d0072a5d912fb436acd4baacf00c 228 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 83 176 2.5E-11 T 11-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 AMK58_20865 a283d0072a5d912fb436acd4baacf00c 228 Hamap MF_00657 PKHD-type hydroxylase YbiX [ybiX]. 1 228 43.74 T 11-10-2018 IPR023550 PKHD-type hydroxylase GO:0016706|GO:0055114 AMK58_20865 a283d0072a5d912fb436acd4baacf00c 228 Gene3D G3DSA:2.60.120.620 1 179 1.4E-39 T 11-10-2018 AMK58_20530 df5e58cbd46f9759088d511bf05708ba 308 Pfam PF13489 Methyltransferase domain 92 238 7.8E-15 T 11-10-2018 AMK58_20530 df5e58cbd46f9759088d511bf05708ba 308 SUPERFAMILY SSF53335 82 254 3.75E-30 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_20530 df5e58cbd46f9759088d511bf05708ba 308 Gene3D G3DSA:3.40.50.150 77 265 2.1E-28 T 11-10-2018 AMK58_18220 7ae5df400eb7452f7b19d68c80f98b9f 288 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 5 287 48.387 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMK58_18220 7ae5df400eb7452f7b19d68c80f98b9f 288 SUPERFAMILY SSF53328 93 288 9.94E-64 T 11-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMK58_18220 7ae5df400eb7452f7b19d68c80f98b9f 288 SUPERFAMILY SSF55021 6 92 3.21E-16 T 11-10-2018 AMK58_18220 7ae5df400eb7452f7b19d68c80f98b9f 288 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 9 287 3.2E-105 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMK58_18220 7ae5df400eb7452f7b19d68c80f98b9f 288 Pfam PF00551 Formyl transferase 93 269 1.8E-36 T 11-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMK58_18220 7ae5df400eb7452f7b19d68c80f98b9f 288 Gene3D G3DSA:3.30.70.260 2 91 2.0E-28 T 11-10-2018 AMK58_18220 7ae5df400eb7452f7b19d68c80f98b9f 288 Gene3D G3DSA:3.40.50.170 92 287 1.7E-72 T 11-10-2018 AMK58_18220 7ae5df400eb7452f7b19d68c80f98b9f 288 PIRSF PIRSF036480 5 288 1.0E-114 T 11-10-2018 AMK58_18220 7ae5df400eb7452f7b19d68c80f98b9f 288 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 261 286 2.9E-52 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMK58_18220 7ae5df400eb7452f7b19d68c80f98b9f 288 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 93 115 2.9E-52 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMK58_18220 7ae5df400eb7452f7b19d68c80f98b9f 288 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 115 142 2.9E-52 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMK58_18220 7ae5df400eb7452f7b19d68c80f98b9f 288 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 239 261 2.9E-52 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMK58_18220 7ae5df400eb7452f7b19d68c80f98b9f 288 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 10 36 2.9E-52 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMK58_18220 7ae5df400eb7452f7b19d68c80f98b9f 288 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 42 54 2.9E-52 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMK58_10370 132eb14b4d997654c2cad40fa0c3121e 275 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 273 47.454 T 11-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 AMK58_10370 132eb14b4d997654c2cad40fa0c3121e 275 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 2.7E-31 T 11-10-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_10370 132eb14b4d997654c2cad40fa0c3121e 275 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 125 250 1.5E-56 T 11-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 AMK58_10370 132eb14b4d997654c2cad40fa0c3121e 275 Gene3D G3DSA:4.10.950.10 196 274 3.5E-35 T 11-10-2018 IPR014726 Ribosomal protein L2, domain 3 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10370 132eb14b4d997654c2cad40fa0c3121e 275 SMART SM01383 42 118 1.3E-44 T 11-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_10370 132eb14b4d997654c2cad40fa0c3121e 275 Gene3D G3DSA:2.40.50.140 1 114 1.5E-46 T 11-10-2018 AMK58_10370 132eb14b4d997654c2cad40fa0c3121e 275 SUPERFAMILY SSF50104 126 272 1.75E-61 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily AMK58_10370 132eb14b4d997654c2cad40fa0c3121e 275 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 273 6.2E-127 T 11-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 AMK58_10370 132eb14b4d997654c2cad40fa0c3121e 275 Gene3D G3DSA:2.30.30.30 115 195 8.5E-32 T 11-10-2018 IPR014722 Ribosomal protein L2, domain 2 AMK58_10370 132eb14b4d997654c2cad40fa0c3121e 275 SMART SM01382 124 252 1.5E-90 T 11-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 AMK58_10370 132eb14b4d997654c2cad40fa0c3121e 275 SUPERFAMILY SSF50249 2 125 1.51E-48 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_10370 132eb14b4d997654c2cad40fa0c3121e 275 PIRSF PIRSF002158 4 275 2.8E-102 T 11-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_10370 132eb14b4d997654c2cad40fa0c3121e 275 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 11-10-2018 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_19640 10072e09c0ce3dfb22ebf1ef1cb9990a 365 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 38 322 3.1E-63 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 AMK58_19640 10072e09c0ce3dfb22ebf1ef1cb9990a 365 PIRSF PIRSF039026 1 356 1.7E-126 T 11-10-2018 IPR026289 Solute binding protein, mannitol/chloroaromatic system-like AMK58_19640 10072e09c0ce3dfb22ebf1ef1cb9990a 365 SUPERFAMILY SSF53850 134 269 1.79E-5 T 11-10-2018 AMK58_19640 10072e09c0ce3dfb22ebf1ef1cb9990a 365 Gene3D G3DSA:3.40.190.10 152 322 3.8E-130 T 11-10-2018 AMK58_19640 10072e09c0ce3dfb22ebf1ef1cb9990a 365 Gene3D G3DSA:3.40.190.170 32 336 3.8E-130 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily AMK58_28670 6071b6b1fd130de72a66112fb5d0bcc2 420 Gene3D G3DSA:3.30.450.40 12 183 2.1E-26 T 11-10-2018 IPR029016 GAF-like domain superfamily AMK58_28670 6071b6b1fd130de72a66112fb5d0bcc2 420 PRINTS PR00344 Bacterial sensor protein C-terminal signature 360 370 6.6E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_28670 6071b6b1fd130de72a66112fb5d0bcc2 420 PRINTS PR00344 Bacterial sensor protein C-terminal signature 399 412 6.6E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_28670 6071b6b1fd130de72a66112fb5d0bcc2 420 PRINTS PR00344 Bacterial sensor protein C-terminal signature 375 393 6.6E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_28670 6071b6b1fd130de72a66112fb5d0bcc2 420 PRINTS PR00344 Bacterial sensor protein C-terminal signature 342 356 6.6E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_28670 6071b6b1fd130de72a66112fb5d0bcc2 420 SUPERFAMILY SSF55781 17 185 3.05E-22 T 11-10-2018 AMK58_28670 6071b6b1fd130de72a66112fb5d0bcc2 420 SMART SM00387 306 415 6.9E-28 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_28670 6071b6b1fd130de72a66112fb5d0bcc2 420 SUPERFAMILY SSF47384 182 255 1.0E-7 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_28670 6071b6b1fd130de72a66112fb5d0bcc2 420 SUPERFAMILY SSF55874 251 413 2.49E-38 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_28670 6071b6b1fd130de72a66112fb5d0bcc2 420 Gene3D G3DSA:3.30.565.10 264 417 6.7E-37 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_28670 6071b6b1fd130de72a66112fb5d0bcc2 420 Pfam PF13185 GAF domain 34 167 2.9E-9 T 11-10-2018 IPR003018 GAF domain GO:0005515 AMK58_28670 6071b6b1fd130de72a66112fb5d0bcc2 420 Pfam PF00512 His Kinase A (phospho-acceptor) domain 196 254 1.4E-6 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_28670 6071b6b1fd130de72a66112fb5d0bcc2 420 SMART SM00065 35 177 5.4E-11 T 11-10-2018 IPR003018 GAF domain GO:0005515 AMK58_28670 6071b6b1fd130de72a66112fb5d0bcc2 420 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 312 413 1.9E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_28670 6071b6b1fd130de72a66112fb5d0bcc2 420 SMART SM00388 196 260 8.8E-4 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_28670 6071b6b1fd130de72a66112fb5d0bcc2 420 Gene3D G3DSA:1.10.287.130 184 259 4.0E-5 T 11-10-2018 AMK58_15810 c1eaf76f943eaef4b9dd1f5dd983fd5b 170 Gene3D G3DSA:1.10.10.10 8 151 6.1E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_15810 c1eaf76f943eaef4b9dd1f5dd983fd5b 170 ProSitePatterns PS01117 MarR-type HTH domain signature. 77 111 - T 11-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site AMK58_15810 c1eaf76f943eaef4b9dd1f5dd983fd5b 170 PRINTS PR00598 Bacterial regulatory protein MarR family signature 62 78 7.9E-7 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_15810 c1eaf76f943eaef4b9dd1f5dd983fd5b 170 PRINTS PR00598 Bacterial regulatory protein MarR family signature 79 94 7.9E-7 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_15810 c1eaf76f943eaef4b9dd1f5dd983fd5b 170 PRINTS PR00598 Bacterial regulatory protein MarR family signature 98 114 7.9E-7 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_15810 c1eaf76f943eaef4b9dd1f5dd983fd5b 170 Pfam PF12802 MarR family 44 102 9.3E-13 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_15810 c1eaf76f943eaef4b9dd1f5dd983fd5b 170 SUPERFAMILY SSF46785 22 151 1.2E-26 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_15810 c1eaf76f943eaef4b9dd1f5dd983fd5b 170 SMART SM00347 38 138 1.4E-15 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_29205 a46e8a994c04250b0f2c62c3b4c80547 270 PIRSF PIRSF039097 1 270 4.5E-119 T 11-10-2018 IPR030669 Molybdenum storage protein subunit alpha/beta GO:0005737|GO:0030151 AMK58_29205 a46e8a994c04250b0f2c62c3b4c80547 270 Gene3D G3DSA:3.40.1160.10 1 270 2.0E-75 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMK58_29205 a46e8a994c04250b0f2c62c3b4c80547 270 Pfam PF00696 Amino acid kinase family 39 218 4.7E-20 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 AMK58_29205 a46e8a994c04250b0f2c62c3b4c80547 270 SUPERFAMILY SSF53633 36 268 1.23E-28 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMK58_24830 4e39e8bbaf8bb948adf568c36c4c1bad 175 Gene3D G3DSA:3.40.630.30 6 172 1.7E-10 T 11-10-2018 AMK58_24830 4e39e8bbaf8bb948adf568c36c4c1bad 175 Pfam PF00583 Acetyltransferase (GNAT) family 90 141 2.9E-4 T 11-10-2018 IPR000182 GNAT domain AMK58_24830 4e39e8bbaf8bb948adf568c36c4c1bad 175 SUPERFAMILY SSF55729 5 162 6.58E-13 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_01695 783939c96ad973996996245a40ab37b8 221 SUPERFAMILY SSF55620 24 214 1.41E-76 T 11-10-2018 AMK58_01695 783939c96ad973996996245a40ab37b8 221 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 36 213 1.7E-67 T 11-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 AMK58_01695 783939c96ad973996996245a40ab37b8 221 Gene3D G3DSA:3.30.1130.10 83 216 3.3E-56 T 11-10-2018 AMK58_01695 783939c96ad973996996245a40ab37b8 221 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 31 214 39.137 T 11-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 AMK58_01695 783939c96ad973996996245a40ab37b8 221 Pfam PF01227 GTP cyclohydrolase I 36 213 4.5E-75 T 11-10-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 AMK58_01695 783939c96ad973996996245a40ab37b8 221 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 141 151 - T 11-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 AMK58_01695 783939c96ad973996996245a40ab37b8 221 Gene3D G3DSA:1.10.286.10 18 79 7.3E-18 T 11-10-2018 AMK58_01695 783939c96ad973996996245a40ab37b8 221 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 93 109 - T 11-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 AMK58_28190 92e766c794f754288d7a4f23f70100bd 480 TIGRFAM TIGR03810 arg_ornith_anti: arginine-ornithine antiporter 9 478 3.6E-193 T 11-10-2018 IPR022461 Arginine/ornithine antiporter GO:0005887|GO:0006527|GO:0043858 AMK58_28190 92e766c794f754288d7a4f23f70100bd 480 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 4 478 2.6E-181 T 11-10-2018 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 AMK58_28190 92e766c794f754288d7a4f23f70100bd 480 Gene3D G3DSA:1.20.1740.10 4 453 5.1E-59 T 11-10-2018 AMK58_28190 92e766c794f754288d7a4f23f70100bd 480 Pfam PF13520 Amino acid permease 11 420 6.7E-68 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 AMK58_28190 92e766c794f754288d7a4f23f70100bd 480 PIRSF PIRSF006060 1 480 2.3E-50 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 AMK58_17055 11fff9914b974e686b74ae423e45dee1 454 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 154 174 - T 11-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 AMK58_17055 11fff9914b974e686b74ae423e45dee1 454 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 20 448 7.3E-103 T 11-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 AMK58_17055 11fff9914b974e686b74ae423e45dee1 454 Gene3D G3DSA:3.80.30.20 148 389 7.0E-71 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe AMK58_17055 11fff9914b974e686b74ae423e45dee1 454 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 19 450 61.099 T 11-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 AMK58_17055 11fff9914b974e686b74ae423e45dee1 454 Gene3D G3DSA:3.40.50.12160 20 136 1.3E-28 T 11-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily AMK58_17055 11fff9914b974e686b74ae423e45dee1 454 Pfam PF04055 Radical SAM superfamily 156 333 1.6E-27 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMK58_17055 11fff9914b974e686b74ae423e45dee1 454 Pfam PF00919 Uncharacterized protein family UPF0004 20 108 8.1E-20 T 11-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 AMK58_17055 11fff9914b974e686b74ae423e45dee1 454 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 20 448 1.4E-176 T 11-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 AMK58_17055 11fff9914b974e686b74ae423e45dee1 454 SUPERFAMILY SSF102114 135 381 7.85E-51 T 11-10-2018 AMK58_17055 11fff9914b974e686b74ae423e45dee1 454 SMART SM00729 150 375 1.3E-48 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMK58_17055 11fff9914b974e686b74ae423e45dee1 454 Gene3D G3DSA:2.40.50.140 390 454 1.4E-22 T 11-10-2018 AMK58_09745 285078bcb0cf19a1cb53aff89601440b 714 SMART SM00889 498 616 1.3E-61 T 11-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 AMK58_09745 285078bcb0cf19a1cb53aff89601440b 714 Pfam PF14492 Elongation Factor G, domain II 422 495 4.3E-30 T 11-10-2018 AMK58_09745 285078bcb0cf19a1cb53aff89601440b 714 Gene3D G3DSA:3.30.230.10 502 705 3.6E-86 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMK58_09745 285078bcb0cf19a1cb53aff89601440b 714 PRINTS PR00315 GTP-binding elongation factor signature 12 25 1.4E-16 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_09745 285078bcb0cf19a1cb53aff89601440b 714 PRINTS PR00315 GTP-binding elongation factor signature 63 71 1.4E-16 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_09745 285078bcb0cf19a1cb53aff89601440b 714 PRINTS PR00315 GTP-binding elongation factor signature 99 110 1.4E-16 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_09745 285078bcb0cf19a1cb53aff89601440b 714 PRINTS PR00315 GTP-binding elongation factor signature 135 144 1.4E-16 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_09745 285078bcb0cf19a1cb53aff89601440b 714 PRINTS PR00315 GTP-binding elongation factor signature 83 93 1.4E-16 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_09745 285078bcb0cf19a1cb53aff89601440b 714 Gene3D G3DSA:2.40.30.10 313 423 9.6E-38 T 11-10-2018 AMK58_09745 285078bcb0cf19a1cb53aff89601440b 714 Gene3D G3DSA:3.40.50.300 2 312 2.8E-101 T 11-10-2018 AMK58_09745 285078bcb0cf19a1cb53aff89601440b 714 Gene3D G3DSA:3.30.70.240 622 692 3.6E-86 T 11-10-2018 AMK58_09745 285078bcb0cf19a1cb53aff89601440b 714 Pfam PF00009 Elongation factor Tu GTP binding domain 9 300 8.9E-63 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_09745 285078bcb0cf19a1cb53aff89601440b 714 SUPERFAMILY SSF52540 7 300 4.07E-92 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_09745 285078bcb0cf19a1cb53aff89601440b 714 Hamap MF_00054_B Elongation factor G [fusA]. 6 709 99.026 T 11-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMK58_09745 285078bcb0cf19a1cb53aff89601440b 714 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 709 2.4E-288 T 11-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMK58_09745 285078bcb0cf19a1cb53aff89601440b 714 SUPERFAMILY SSF54980 621 707 1.63E-29 T 11-10-2018 IPR035647 EF-G domain III/V-like AMK58_09745 285078bcb0cf19a1cb53aff89601440b 714 Pfam PF03764 Elongation factor G, domain IV 497 615 2.5E-42 T 11-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 AMK58_09745 285078bcb0cf19a1cb53aff89601440b 714 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 10 185 1.4E-30 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMK58_09745 285078bcb0cf19a1cb53aff89601440b 714 Pfam PF00679 Elongation factor G C-terminus 618 704 1.2E-28 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like AMK58_09745 285078bcb0cf19a1cb53aff89601440b 714 SUPERFAMILY SSF54980 420 498 1.29E-21 T 11-10-2018 IPR035647 EF-G domain III/V-like AMK58_09745 285078bcb0cf19a1cb53aff89601440b 714 Gene3D G3DSA:3.30.70.870 424 501 3.0E-30 T 11-10-2018 AMK58_09745 285078bcb0cf19a1cb53aff89601440b 714 Pfam PF03144 Elongation factor Tu domain 2 342 409 2.0E-12 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AMK58_09745 285078bcb0cf19a1cb53aff89601440b 714 SUPERFAMILY SSF50447 284 422 2.52E-29 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMK58_09745 285078bcb0cf19a1cb53aff89601440b 714 SUPERFAMILY SSF54211 497 617 4.3E-42 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMK58_09745 285078bcb0cf19a1cb53aff89601440b 714 SMART SM00838 618 705 6.2E-51 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like AMK58_09745 285078bcb0cf19a1cb53aff89601440b 714 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 56 71 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site AMK58_23100 17672275daeec9a2af710ad12e8ae876 558 SUPERFAMILY SSF81296 149 281 4.62E-27 T 11-10-2018 IPR014756 Immunoglobulin E-set AMK58_23100 17672275daeec9a2af710ad12e8ae876 558 Gene3D G3DSA:3.40.50.1820 276 535 2.8E-65 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_23100 17672275daeec9a2af710ad12e8ae876 558 Pfam PF11806 Domain of unknown function (DUF3327) 180 284 2.8E-18 T 11-10-2018 IPR021764 Enterochelin esterase, N-terminal GO:0005506|GO:0005737|GO:0006826|GO:0008849 AMK58_23100 17672275daeec9a2af710ad12e8ae876 558 Gene3D G3DSA:2.60.40.10 143 270 2.8E-8 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_23100 17672275daeec9a2af710ad12e8ae876 558 Pfam PF00756 Putative esterase 304 530 7.1E-26 T 11-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 AMK58_23100 17672275daeec9a2af710ad12e8ae876 558 SUPERFAMILY SSF53474 290 533 1.51E-38 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_20670 ddb5bc40f353bb0064c260eafd3b0c50 364 Gene3D G3DSA:3.40.190.10 153 323 3.6E-129 T 11-10-2018 AMK58_20670 ddb5bc40f353bb0064c260eafd3b0c50 364 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 39 323 7.5E-58 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 AMK58_20670 ddb5bc40f353bb0064c260eafd3b0c50 364 SUPERFAMILY SSF53850 160 304 2.44E-6 T 11-10-2018 AMK58_20670 ddb5bc40f353bb0064c260eafd3b0c50 364 Gene3D G3DSA:3.40.190.170 33 337 3.6E-129 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily AMK58_20670 ddb5bc40f353bb0064c260eafd3b0c50 364 PIRSF PIRSF039026 1 358 1.9E-126 T 11-10-2018 IPR026289 Solute binding protein, mannitol/chloroaromatic system-like AMK58_12225 90dab57d4b7c5f2c69021e56fa73f1f7 201 SUPERFAMILY SSF50346 96 163 3.14E-15 T 11-10-2018 IPR011033 PRC-barrel-like superfamily AMK58_12225 90dab57d4b7c5f2c69021e56fa73f1f7 201 Gene3D G3DSA:2.40.30.60 3 89 1.2E-18 T 11-10-2018 IPR036976 RimM, N-terminal domain superfamily GO:0006364 AMK58_12225 90dab57d4b7c5f2c69021e56fa73f1f7 201 Pfam PF01782 RimM N-terminal domain 7 86 1.2E-18 T 11-10-2018 IPR002676 RimM, N-terminal GO:0006364 AMK58_12225 90dab57d4b7c5f2c69021e56fa73f1f7 201 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 4 166 22.71 T 11-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 AMK58_12225 90dab57d4b7c5f2c69021e56fa73f1f7 201 Pfam PF05239 PRC-barrel domain 93 163 1.1E-7 T 11-10-2018 IPR027275 PRC-barrel domain AMK58_12225 90dab57d4b7c5f2c69021e56fa73f1f7 201 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 5 164 1.5E-39 T 11-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 AMK58_12225 90dab57d4b7c5f2c69021e56fa73f1f7 201 Gene3D G3DSA:2.30.30.240 92 170 1.5E-12 T 11-10-2018 AMK58_12225 90dab57d4b7c5f2c69021e56fa73f1f7 201 SUPERFAMILY SSF50447 5 89 2.83E-18 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMK58_06640 3af860feafada47094a53d2328696507 282 Gene3D G3DSA:3.40.50.1820 10 258 3.1E-37 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_06640 3af860feafada47094a53d2328696507 282 Pfam PF12697 Alpha/beta hydrolase family 20 245 5.4E-21 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_06640 3af860feafada47094a53d2328696507 282 SUPERFAMILY SSF53474 9 261 4.95E-38 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_17010 a6f1e07e377be428ea7ede96f6d329a1 316 SUPERFAMILY SSF55874 178 310 9.04E-20 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_17010 a6f1e07e377be428ea7ede96f6d329a1 316 Gene3D G3DSA:3.30.565.10 179 315 1.3E-30 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_17010 a6f1e07e377be428ea7ede96f6d329a1 316 Pfam PF13581 Histidine kinase-like ATPase domain 206 276 6.1E-10 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_17010 a6f1e07e377be428ea7ede96f6d329a1 316 SMART SM00387 215 314 5.7E-12 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_17010 a6f1e07e377be428ea7ede96f6d329a1 316 PRINTS PR00344 Bacterial sensor protein C-terminal signature 255 269 1.0E-5 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_17010 a6f1e07e377be428ea7ede96f6d329a1 316 PRINTS PR00344 Bacterial sensor protein C-terminal signature 274 292 1.0E-5 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_17010 a6f1e07e377be428ea7ede96f6d329a1 316 PRINTS PR00344 Bacterial sensor protein C-terminal signature 298 311 1.0E-5 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_17010 a6f1e07e377be428ea7ede96f6d329a1 316 Gene3D G3DSA:3.30.450.20 88 173 7.6E-6 T 11-10-2018 AMK58_17010 a6f1e07e377be428ea7ede96f6d329a1 316 Pfam PF07568 Histidine kinase 122 195 1.1E-16 T 11-10-2018 IPR011495 Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain AMK58_17010 a6f1e07e377be428ea7ede96f6d329a1 316 Pfam PF13493 Domain of unknown function (DUF4118) 2 94 1.4E-11 T 11-10-2018 IPR025201 Sensor protein KdpD, transmembrane domain AMK58_16715 5fe7fde66b16118d6844581643a31721 248 Pfam PF00005 ABC transporter 18 161 3.2E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_16715 5fe7fde66b16118d6844581643a31721 248 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 211 233 3.3E-9 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AMK58_16715 5fe7fde66b16118d6844581643a31721 248 SUPERFAMILY SSF52540 2 233 1.17E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_16715 5fe7fde66b16118d6844581643a31721 248 Gene3D G3DSA:3.40.50.300 1 235 4.0E-62 T 11-10-2018 AMK58_16715 5fe7fde66b16118d6844581643a31721 248 SMART SM00382 26 210 2.5E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_21310 2ffc4cce4f408d387e6e16513a93c493 120 SUPERFAMILY SSF49472 4 120 6.41E-44 T 11-10-2018 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 AMK58_21310 2ffc4cce4f408d387e6e16513a93c493 120 ProSitePatterns PS00768 Transthyretin signature 1. 10 25 - T 11-10-2018 IPR023418 Transthyretin, thyroxine binding site Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 AMK58_21310 2ffc4cce4f408d387e6e16513a93c493 120 TIGRFAM TIGR02962 hdxy_isourate: hydroxyisourate hydrolase 6 120 8.0E-42 T 11-10-2018 IPR014306 Hydroxyisourate hydrolase GO:0006144|GO:0033971 KEGG: 00230+3.5.2.17|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 AMK58_21310 2ffc4cce4f408d387e6e16513a93c493 120 ProSitePatterns PS00769 Transthyretin signature 2. 103 115 - T 11-10-2018 IPR023419 Transthyretin, conserved site Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 AMK58_21310 2ffc4cce4f408d387e6e16513a93c493 120 Pfam PF00576 HIUase/Transthyretin family 7 119 9.1E-38 T 11-10-2018 IPR023416 Transthyretin/hydroxyisourate hydrolase domain Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 AMK58_21310 2ffc4cce4f408d387e6e16513a93c493 120 Gene3D G3DSA:2.60.40.180 1 120 2.5E-43 T 11-10-2018 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 AMK58_21310 2ffc4cce4f408d387e6e16513a93c493 120 PRINTS PR00189 Transthyretin signature 98 120 9.5E-9 T 11-10-2018 IPR000895 Transthyretin/hydroxyisourate hydrolase Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 AMK58_21310 2ffc4cce4f408d387e6e16513a93c493 120 PRINTS PR00189 Transthyretin signature 6 26 9.5E-9 T 11-10-2018 IPR000895 Transthyretin/hydroxyisourate hydrolase Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 AMK58_08610 73ff32cc2157f5fb826fbbaa2b2b14ca 461 Pfam PF01474 Class-II DAHP synthetase family 5 442 6.6E-207 T 11-10-2018 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 AMK58_08610 73ff32cc2157f5fb826fbbaa2b2b14ca 461 TIGRFAM TIGR01358 DAHP_synth_II: 3-deoxy-7-phosphoheptulonate synthase 5 448 7.9E-225 T 11-10-2018 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 AMK58_08610 73ff32cc2157f5fb826fbbaa2b2b14ca 461 SUPERFAMILY SSF51569 2 446 3.0E-206 T 11-10-2018 AMK58_18930 da585c7e6c77e87cde5fa59c2f1a2ef8 772 SMART SM00919 163 400 5.4E-133 T 11-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 AMK58_18930 da585c7e6c77e87cde5fa59c2f1a2ef8 772 Pfam PF01515 Phosphate acetyl/butaryl transferase 429 749 9.2E-94 T 11-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AMK58_18930 da585c7e6c77e87cde5fa59c2f1a2ef8 772 PIRSF PIRSF036684 1 756 0.0 T 11-10-2018 IPR012188 NAD(P)-dependent malic enzyme GO:0004470|GO:0006108|GO:0046872 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 AMK58_18930 da585c7e6c77e87cde5fa59c2f1a2ef8 772 SMART SM01274 18 151 4.5E-74 T 11-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AMK58_18930 da585c7e6c77e87cde5fa59c2f1a2ef8 772 Gene3D G3DSA:3.40.50.720 161 444 2.8E-80 T 11-10-2018 AMK58_18930 da585c7e6c77e87cde5fa59c2f1a2ef8 772 SUPERFAMILY SSF53223 11 161 1.73E-50 T 11-10-2018 AMK58_18930 da585c7e6c77e87cde5fa59c2f1a2ef8 772 Pfam PF00390 Malic enzyme, N-terminal domain 20 150 2.7E-25 T 11-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AMK58_18930 da585c7e6c77e87cde5fa59c2f1a2ef8 772 Gene3D G3DSA:3.40.50.10750 572 725 5.7E-92 T 11-10-2018 AMK58_18930 da585c7e6c77e87cde5fa59c2f1a2ef8 772 Pfam PF03949 Malic enzyme, NAD binding domain 165 357 2.6E-19 T 11-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 AMK58_18930 da585c7e6c77e87cde5fa59c2f1a2ef8 772 SUPERFAMILY SSF51735 163 442 8.15E-83 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_18930 da585c7e6c77e87cde5fa59c2f1a2ef8 772 SUPERFAMILY SSF53659 429 752 2.8E-89 T 11-10-2018 AMK58_18930 da585c7e6c77e87cde5fa59c2f1a2ef8 772 Gene3D G3DSA:3.40.50.10380 1 160 1.3E-65 T 11-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 AMK58_18930 da585c7e6c77e87cde5fa59c2f1a2ef8 772 Gene3D G3DSA:3.40.50.10950 445 749 5.7E-92 T 11-10-2018 AMK58_20105 f4b1ae9b568109ff00bdf787a2896aea 798 Gene3D G3DSA:3.40.50.1000 470 743 4.0E-88 T 11-10-2018 IPR023214 HAD superfamily AMK58_20105 f4b1ae9b568109ff00bdf787a2896aea 798 ProSitePatterns PS01047 Heavy-metal-associated domain. 78 107 - T 11-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 AMK58_20105 f4b1ae9b568109ff00bdf787a2896aea 798 SUPERFAMILY SSF55008 7 71 4.97E-19 T 11-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 AMK58_20105 f4b1ae9b568109ff00bdf787a2896aea 798 SUPERFAMILY SSF55008 74 140 3.67E-20 T 11-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 AMK58_20105 f4b1ae9b568109ff00bdf787a2896aea 798 Gene3D G3DSA:2.70.150.20 283 394 2.8E-40 T 11-10-2018 AMK58_20105 f4b1ae9b568109ff00bdf787a2896aea 798 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 206 794 7.1E-174 T 11-10-2018 AMK58_20105 f4b1ae9b568109ff00bdf787a2896aea 798 Pfam PF00403 Heavy-metal-associated domain 76 135 4.6E-15 T 11-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AMK58_20105 f4b1ae9b568109ff00bdf787a2896aea 798 Pfam PF00403 Heavy-metal-associated domain 11 68 2.0E-15 T 11-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AMK58_20105 f4b1ae9b568109ff00bdf787a2896aea 798 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 339 353 8.0E-26 T 11-10-2018 AMK58_20105 f4b1ae9b568109ff00bdf787a2896aea 798 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 714 726 8.0E-26 T 11-10-2018 AMK58_20105 f4b1ae9b568109ff00bdf787a2896aea 798 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 638 648 8.0E-26 T 11-10-2018 AMK58_20105 f4b1ae9b568109ff00bdf787a2896aea 798 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 691 710 8.0E-26 T 11-10-2018 AMK58_20105 f4b1ae9b568109ff00bdf787a2896aea 798 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 489 503 8.0E-26 T 11-10-2018 AMK58_20105 f4b1ae9b568109ff00bdf787a2896aea 798 Gene3D G3DSA:3.40.1110.10 500 623 4.0E-88 T 11-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AMK58_20105 f4b1ae9b568109ff00bdf787a2896aea 798 Pfam PF00702 haloacid dehalogenase-like hydrolase 485 705 1.3E-43 T 11-10-2018 AMK58_20105 f4b1ae9b568109ff00bdf787a2896aea 798 Gene3D G3DSA:3.30.70.100 4 70 1.0E-20 T 11-10-2018 AMK58_20105 f4b1ae9b568109ff00bdf787a2896aea 798 Gene3D G3DSA:3.30.70.100 71 138 1.9E-21 T 11-10-2018 AMK58_20105 f4b1ae9b568109ff00bdf787a2896aea 798 SUPERFAMILY SSF81653 292 389 6.28E-30 T 11-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 AMK58_20105 f4b1ae9b568109ff00bdf787a2896aea 798 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 224 793 7.5E-187 T 11-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AMK58_20105 f4b1ae9b568109ff00bdf787a2896aea 798 ProSitePatterns PS01047 Heavy-metal-associated domain. 11 40 - T 11-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 AMK58_20105 f4b1ae9b568109ff00bdf787a2896aea 798 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 75 136 7.3E-10 T 11-10-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 AMK58_20105 f4b1ae9b568109ff00bdf787a2896aea 798 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 8 68 1.5E-11 T 11-10-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 AMK58_20105 f4b1ae9b568109ff00bdf787a2896aea 798 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 262 771 2.0E-83 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AMK58_20105 f4b1ae9b568109ff00bdf787a2896aea 798 SUPERFAMILY SSF56784 488 791 9.35E-56 T 11-10-2018 IPR036412 HAD-like superfamily AMK58_20105 f4b1ae9b568109ff00bdf787a2896aea 798 Pfam PF00122 E1-E2 ATPase 290 469 4.7E-58 T 11-10-2018 AMK58_20105 f4b1ae9b568109ff00bdf787a2896aea 798 SUPERFAMILY SSF81665 235 762 6.67E-15 T 11-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 AMK58_20105 f4b1ae9b568109ff00bdf787a2896aea 798 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 491 497 - T 11-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 AMK58_10780 9095f1d9b83b37cd2d21d1111b03c0c6 503 Gene3D G3DSA:1.20.5.570 462 499 2.4E-6 T 11-10-2018 AMK58_10780 9095f1d9b83b37cd2d21d1111b03c0c6 503 Gene3D G3DSA:3.40.1670.10 344 461 4.0E-52 T 11-10-2018 AMK58_10780 9095f1d9b83b37cd2d21d1111b03c0c6 503 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 6 462 9.7E-161 T 11-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 AMK58_10780 9095f1d9b83b37cd2d21d1111b03c0c6 503 SUPERFAMILY SSF143968 330 494 7.06E-68 T 11-10-2018 AMK58_10780 9095f1d9b83b37cd2d21d1111b03c0c6 503 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 10 438 2.7E-169 T 11-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 AMK58_10780 9095f1d9b83b37cd2d21d1111b03c0c6 503 SUPERFAMILY SSF50475 3 329 4.71E-117 T 11-10-2018 AMK58_29090 f5015e042980bf1d4acb0c3676ecf974 312 Pfam PF04796 Plasmid encoded RepA protein 94 250 1.0E-75 T 11-10-2018 IPR006881 Plasmid encoded RepA protein AMK58_10310 d2a007dee17f71368aeb0c74500741c0 177 Gene3D G3DSA:3.90.930.12 1 82 1.6E-26 T 11-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10310 d2a007dee17f71368aeb0c74500741c0 177 SUPERFAMILY SSF56053 83 177 3.74E-37 T 11-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10310 d2a007dee17f71368aeb0c74500741c0 177 PIRSF PIRSF002162 1 177 5.3E-49 T 11-10-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10310 d2a007dee17f71368aeb0c74500741c0 177 Pfam PF00347 Ribosomal protein L6 91 164 3.3E-21 T 11-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10310 d2a007dee17f71368aeb0c74500741c0 177 Pfam PF00347 Ribosomal protein L6 11 82 2.6E-19 T 11-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10310 d2a007dee17f71368aeb0c74500741c0 177 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 11-10-2018 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_10310 d2a007dee17f71368aeb0c74500741c0 177 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 35.551 T 11-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMK58_10310 d2a007dee17f71368aeb0c74500741c0 177 Gene3D G3DSA:3.90.930.12 83 177 5.6E-40 T 11-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10310 d2a007dee17f71368aeb0c74500741c0 177 PRINTS PR00059 Ribosomal protein L6 signature 99 115 6.7E-32 T 11-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMK58_10310 d2a007dee17f71368aeb0c74500741c0 177 PRINTS PR00059 Ribosomal protein L6 signature 71 96 6.7E-32 T 11-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMK58_10310 d2a007dee17f71368aeb0c74500741c0 177 PRINTS PR00059 Ribosomal protein L6 signature 141 162 6.7E-32 T 11-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMK58_10310 d2a007dee17f71368aeb0c74500741c0 177 SUPERFAMILY SSF56053 1 82 3.6E-24 T 11-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10310 d2a007dee17f71368aeb0c74500741c0 177 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 9.0E-73 T 11-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 SUPERFAMILY SSF52172 1391 1448 1.57E-6 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 SMART SM00388 943 1011 1.5E-22 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1058 1181 2.2E-27 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1143 1161 6.9E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1126 1136 6.9E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1167 1180 6.9E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1108 1122 6.9E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 SUPERFAMILY SSF47384 928 1011 1.75E-19 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 SMART SM00387 1058 1183 4.9E-37 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 SUPERFAMILY SSF55874 1000 1181 1.14E-42 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 Gene3D G3DSA:3.40.50.2300 1386 1490 1.1E-6 T 11-10-2018 AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 Pfam PF00072 Response regulator receiver domain 1236 1344 1.3E-15 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 Pfam PF00072 Response regulator receiver domain 1515 1626 1.0E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 SMART SM00304 96 153 0.0014 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 SMART SM00304 561 613 2.6E-4 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 SMART SM00304 5 56 120.0 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 SMART SM00304 469 521 5.4E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 SMART SM00304 193 245 3.4E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 SMART SM00304 285 337 5.9E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 SMART SM00304 377 429 7.2E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 SMART SM00304 653 705 5.2E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 Gene3D G3DSA:1.10.8.500 195 251 4.8E-7 T 11-10-2018 AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 Gene3D G3DSA:1.10.8.500 268 343 1.9E-7 T 11-10-2018 AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 Gene3D G3DSA:1.10.8.500 653 716 2.8E-6 T 11-10-2018 AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 Gene3D G3DSA:1.10.8.500 452 527 1.0E-7 T 11-10-2018 AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 Gene3D G3DSA:1.10.8.500 378 435 2.1E-7 T 11-10-2018 AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 SUPERFAMILY SSF52172 1233 1357 2.13E-24 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 SUPERFAMILY SSF58104 489 705 2.75E-14 T 11-10-2018 AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 Gene3D G3DSA:3.40.50.12740 1235 1380 1.5E-26 T 11-10-2018 AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 Gene3D G3DSA:3.40.50.12740 1511 1643 1.3E-38 T 11-10-2018 AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 SMART SM00065 729 875 3.5E-10 T 11-10-2018 IPR003018 GAF domain GO:0005515 AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 Gene3D G3DSA:3.30.450.40 717 869 7.7E-19 T 11-10-2018 IPR029016 GAF-like domain superfamily AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 Gene3D G3DSA:3.30.565.10 1010 1185 1.3E-47 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 Pfam PF00512 His Kinase A (phospho-acceptor) domain 944 1011 1.4E-18 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 Gene3D G3DSA:1.10.287.130 908 1009 4.0E-25 T 11-10-2018 AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 SUPERFAMILY SSF52172 1511 1634 2.7E-36 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 SUPERFAMILY SSF55781 692 865 2.18E-29 T 11-10-2018 AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 SUPERFAMILY SSF58104 213 529 1.02E-22 T 11-10-2018 AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 SMART SM00448 1234 1344 1.7E-18 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 SMART SM00448 1512 1626 1.1E-34 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_23800 59fe36cb2190ac01d9a8922ee51d4354 1643 Pfam PF13185 GAF domain 728 865 4.2E-20 T 11-10-2018 IPR003018 GAF domain GO:0005515 AMK58_15675 9efc0806ea3a646da7c849ceac1524bb 305 TIGRFAM TIGR00510 lipA: lipoyl synthase 11 293 5.0E-114 T 11-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AMK58_15675 9efc0806ea3a646da7c849ceac1524bb 305 SMART SM00729 60 273 5.9E-10 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMK58_15675 9efc0806ea3a646da7c849ceac1524bb 305 Gene3D G3DSA:3.20.20.70 58 274 8.4E-18 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_15675 9efc0806ea3a646da7c849ceac1524bb 305 SUPERFAMILY SSF102114 29 299 1.2E-63 T 11-10-2018 AMK58_15675 9efc0806ea3a646da7c849ceac1524bb 305 Pfam PF04055 Radical SAM superfamily 67 226 2.8E-12 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMK58_15675 9efc0806ea3a646da7c849ceac1524bb 305 PIRSF PIRSF005963 3 300 5.2E-131 T 11-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AMK58_15675 9efc0806ea3a646da7c849ceac1524bb 305 Hamap MF_00206 Lipoyl synthase [lipA]. 1 300 148.988 T 11-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AMK58_19575 ec8d4a3e04c42a873faacce6bd408713 921 SMART SM00387 343 486 1.1E-24 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_19575 ec8d4a3e04c42a873faacce6bd408713 921 SUPERFAMILY SSF50341 485 622 3.66E-30 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 AMK58_19575 ec8d4a3e04c42a873faacce6bd408713 921 Gene3D G3DSA:1.20.120.160 1 137 1.8E-33 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMK58_19575 ec8d4a3e04c42a873faacce6bd408713 921 Gene3D G3DSA:1.10.287.560 238 298 1.6E-17 T 11-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 AMK58_19575 ec8d4a3e04c42a873faacce6bd408713 921 Pfam PF01584 CheW-like domain 491 624 2.0E-23 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMK58_19575 ec8d4a3e04c42a873faacce6bd408713 921 Pfam PF01584 CheW-like domain 653 739 2.0E-5 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMK58_19575 ec8d4a3e04c42a873faacce6bd408713 921 Pfam PF00072 Response regulator receiver domain 798 909 2.3E-20 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_19575 ec8d4a3e04c42a873faacce6bd408713 921 SUPERFAMILY SSF55874 302 484 2.1E-38 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_19575 ec8d4a3e04c42a873faacce6bd408713 921 SUPERFAMILY SSF52172 797 915 1.71E-31 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_19575 ec8d4a3e04c42a873faacce6bd408713 921 Gene3D G3DSA:2.30.30.40 486 618 1.6E-38 T 11-10-2018 AMK58_19575 ec8d4a3e04c42a873faacce6bd408713 921 PRINTS PR00344 Bacterial sensor protein C-terminal signature 388 402 9.1E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_19575 ec8d4a3e04c42a873faacce6bd408713 921 PRINTS PR00344 Bacterial sensor protein C-terminal signature 470 483 9.1E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_19575 ec8d4a3e04c42a873faacce6bd408713 921 PRINTS PR00344 Bacterial sensor protein C-terminal signature 446 464 9.1E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_19575 ec8d4a3e04c42a873faacce6bd408713 921 Gene3D G3DSA:2.40.50.180 509 578 1.6E-38 T 11-10-2018 AMK58_19575 ec8d4a3e04c42a873faacce6bd408713 921 SMART SM00448 796 910 4.6E-31 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_19575 ec8d4a3e04c42a873faacce6bd408713 921 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 239 298 6.4E-14 T 11-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 AMK58_19575 ec8d4a3e04c42a873faacce6bd408713 921 SUPERFAMILY SSF47226 1 123 9.29E-31 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMK58_19575 ec8d4a3e04c42a873faacce6bd408713 921 SUPERFAMILY SSF50341 652 769 1.19E-12 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 AMK58_19575 ec8d4a3e04c42a873faacce6bd408713 921 Gene3D G3DSA:3.40.50.2300 784 920 2.5E-30 T 11-10-2018 AMK58_19575 ec8d4a3e04c42a873faacce6bd408713 921 SMART SM01231 238 298 7.2E-19 T 11-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 AMK58_19575 ec8d4a3e04c42a873faacce6bd408713 921 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 346 485 1.1E-15 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_19575 ec8d4a3e04c42a873faacce6bd408713 921 SMART SM00073 1 98 2.1E-31 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMK58_19575 ec8d4a3e04c42a873faacce6bd408713 921 SMART SM00260 648 773 0.0036 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMK58_19575 ec8d4a3e04c42a873faacce6bd408713 921 SMART SM00260 478 623 7.9E-37 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMK58_19575 ec8d4a3e04c42a873faacce6bd408713 921 Pfam PF01627 Hpt domain 3 95 1.1E-16 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMK58_19575 ec8d4a3e04c42a873faacce6bd408713 921 SUPERFAMILY SSF47384 239 299 4.32E-14 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_19575 ec8d4a3e04c42a873faacce6bd408713 921 Gene3D G3DSA:3.30.565.10 299 485 4.3E-57 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_21540 f3a26b40306f52e4d9ec3d7bb640b342 809 Gene3D G3DSA:3.40.50.740 311 473 1.7E-56 T 11-10-2018 AMK58_21540 f3a26b40306f52e4d9ec3d7bb640b342 809 SUPERFAMILY SSF50692 620 806 5.2E-41 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily AMK58_21540 f3a26b40306f52e4d9ec3d7bb640b342 809 Pfam PF00384 Molybdopterin oxidoreductase 2 381 3.3E-21 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_21540 f3a26b40306f52e4d9ec3d7bb640b342 809 Gene3D G3DSA:3.40.228.10 1 272 5.3E-73 T 11-10-2018 AMK58_21540 f3a26b40306f52e4d9ec3d7bb640b342 809 TIGRFAM TIGR01553 formate-DH-alph: formate dehydrogenase-N alpha subunit 1 805 0.0 T 11-10-2018 IPR006443 Formate dehydrogenase-N, alpha subunit GO:0008863|GO:0009055|GO:0043546|GO:0045333|GO:0047111 AMK58_21540 f3a26b40306f52e4d9ec3d7bb640b342 809 SUPERFAMILY SSF53706 1 641 4.45E-226 T 11-10-2018 AMK58_21540 f3a26b40306f52e4d9ec3d7bb640b342 809 Gene3D G3DSA:2.40.40.20 631 806 2.7E-74 T 11-10-2018 AMK58_21540 f3a26b40306f52e4d9ec3d7bb640b342 809 Pfam PF01568 Molydopterin dinucleotide binding domain 684 799 4.3E-14 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 AMK58_21540 f3a26b40306f52e4d9ec3d7bb640b342 809 Gene3D G3DSA:3.40.228.10 520 630 6.2E-27 T 11-10-2018 AMK58_05375 f84d5297ff8875efe2754b41dc62cfb7 385 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 149 377 6.6E-74 T 11-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain AMK58_05375 f84d5297ff8875efe2754b41dc62cfb7 385 Gene3D G3DSA:3.40.50.720 145 328 1.0E-138 T 11-10-2018 AMK58_05375 f84d5297ff8875efe2754b41dc62cfb7 385 SMART SM01002 154 321 9.8E-87 T 11-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain AMK58_05375 f84d5297ff8875efe2754b41dc62cfb7 385 SUPERFAMILY SSF51735 145 327 8.69E-38 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_05375 f84d5297ff8875efe2754b41dc62cfb7 385 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 178 203 - T 11-10-2018 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|Reactome: R-HSA-71403 AMK58_05375 f84d5297ff8875efe2754b41dc62cfb7 385 SUPERFAMILY SSF52283 1 176 2.21E-50 T 11-10-2018 AMK58_05375 f84d5297ff8875efe2754b41dc62cfb7 385 SMART SM01003 4 145 4.7E-65 T 11-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal AMK58_05375 f84d5297ff8875efe2754b41dc62cfb7 385 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 5 145 7.8E-42 T 11-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal AMK58_05375 f84d5297ff8875efe2754b41dc62cfb7 385 Gene3D G3DSA:3.40.50.720 3 374 1.0E-138 T 11-10-2018 AMK58_16500 e2b203ecd7ad4cbfdb10ba545871e800 652 Gene3D G3DSA:3.40.50.2000 449 631 3.7E-130 T 11-10-2018 AMK58_16500 e2b203ecd7ad4cbfdb10ba545871e800 652 Gene3D G3DSA:1.25.40.10 82 150 1.8E-16 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_16500 e2b203ecd7ad4cbfdb10ba545871e800 652 SUPERFAMILY SSF48452 75 263 2.91E-33 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_16500 e2b203ecd7ad4cbfdb10ba545871e800 652 Pfam PF13844 Glycosyl transferase family 41 467 649 1.2E-18 T 11-10-2018 IPR029489 O-GlcNAc transferase, C-terminal KEGG: 00514+2.4.1.255|MetaCyc: PWY-7437|Reactome: R-HSA-3214847|Reactome: R-HSA-5689603 AMK58_16500 e2b203ecd7ad4cbfdb10ba545871e800 652 Pfam PF13844 Glycosyl transferase family 41 295 440 1.9E-29 T 11-10-2018 IPR029489 O-GlcNAc transferase, C-terminal KEGG: 00514+2.4.1.255|MetaCyc: PWY-7437|Reactome: R-HSA-3214847|Reactome: R-HSA-5689603 AMK58_16500 e2b203ecd7ad4cbfdb10ba545871e800 652 Pfam PF13432 Tetratricopeptide repeat 114 175 1.2E-10 T 11-10-2018 AMK58_16500 e2b203ecd7ad4cbfdb10ba545871e800 652 Pfam PF13432 Tetratricopeptide repeat 20 68 1.7E-8 T 11-10-2018 AMK58_16500 e2b203ecd7ad4cbfdb10ba545871e800 652 Gene3D G3DSA:3.40.50.11380 288 638 3.7E-130 T 11-10-2018 AMK58_16500 e2b203ecd7ad4cbfdb10ba545871e800 652 SMART SM00028 108 141 2.4E-5 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_16500 e2b203ecd7ad4cbfdb10ba545871e800 652 SMART SM00028 7 40 35.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_16500 e2b203ecd7ad4cbfdb10ba545871e800 652 SMART SM00028 210 243 4.7E-6 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_16500 e2b203ecd7ad4cbfdb10ba545871e800 652 SMART SM00028 41 74 9.7 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_16500 e2b203ecd7ad4cbfdb10ba545871e800 652 SMART SM00028 142 175 7.1E-4 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_16500 e2b203ecd7ad4cbfdb10ba545871e800 652 SMART SM00028 75 107 130.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_16500 e2b203ecd7ad4cbfdb10ba545871e800 652 SMART SM00028 176 209 0.14 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_16500 e2b203ecd7ad4cbfdb10ba545871e800 652 SUPERFAMILY SSF48452 13 101 1.13E-13 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_16500 e2b203ecd7ad4cbfdb10ba545871e800 652 Gene3D G3DSA:1.25.40.10 184 218 1.2E-9 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_16500 e2b203ecd7ad4cbfdb10ba545871e800 652 Gene3D G3DSA:1.25.40.10 219 274 3.3E-10 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_16500 e2b203ecd7ad4cbfdb10ba545871e800 652 Gene3D G3DSA:1.25.40.10 151 183 4.5E-6 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_16500 e2b203ecd7ad4cbfdb10ba545871e800 652 Gene3D G3DSA:1.25.40.10 1 81 4.1E-11 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_16500 e2b203ecd7ad4cbfdb10ba545871e800 652 SUPERFAMILY SSF53756 325 647 1.94E-10 T 11-10-2018 AMK58_16500 e2b203ecd7ad4cbfdb10ba545871e800 652 Pfam PF00515 Tetratricopeptide repeat 210 243 4.9E-7 T 11-10-2018 IPR001440 Tetratricopeptide repeat 1 GO:0005515 AMK58_17155 e4a63639bd4bd3afdd9707af4c3db1c9 227 Pfam PF06240 Carbon monoxide dehydrogenase subunit G (CoxG) 5 145 1.7E-45 T 11-10-2018 IPR010419 Carbon monoxide dehydrogenase subunit G AMK58_17155 e4a63639bd4bd3afdd9707af4c3db1c9 227 Gene3D G3DSA:3.30.530.20 1 150 1.3E-48 T 11-10-2018 IPR023393 START-like domain superfamily AMK58_17155 e4a63639bd4bd3afdd9707af4c3db1c9 227 SUPERFAMILY SSF55961 1 147 6.39E-47 T 11-10-2018 AMK58_17345 f5e0250e5072d958b9f9996a77357852 328 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 39 310 3.2E-40 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 AMK58_17345 f5e0250e5072d958b9f9996a77357852 328 Gene3D G3DSA:3.40.190.170 29 328 1.5E-90 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily AMK58_00960 4b1d387fd03f8ad2616c9d512fb062e0 471 SUPERFAMILY SSF49503 58 179 3.76E-36 T 11-10-2018 IPR008972 Cupredoxin AMK58_00960 4b1d387fd03f8ad2616c9d512fb062e0 471 SUPERFAMILY SSF49503 320 469 5.4E-30 T 11-10-2018 IPR008972 Cupredoxin AMK58_00960 4b1d387fd03f8ad2616c9d512fb062e0 471 Pfam PF00394 Multicopper oxidase 169 280 2.3E-11 T 11-10-2018 IPR001117 Multicopper oxidase, type 1 GO:0055114 AMK58_00960 4b1d387fd03f8ad2616c9d512fb062e0 471 Gene3D G3DSA:2.60.40.420 30 166 5.1E-42 T 11-10-2018 IPR008972 Cupredoxin AMK58_00960 4b1d387fd03f8ad2616c9d512fb062e0 471 Pfam PF07732 Multicopper oxidase 55 160 1.6E-35 T 11-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 AMK58_00960 4b1d387fd03f8ad2616c9d512fb062e0 471 Pfam PF07731 Multicopper oxidase 369 470 6.9E-26 T 11-10-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 AMK58_00960 4b1d387fd03f8ad2616c9d512fb062e0 471 ProSitePatterns PS00080 Multicopper oxidases signature 2. 452 463 - T 11-10-2018 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 AMK58_00960 4b1d387fd03f8ad2616c9d512fb062e0 471 SUPERFAMILY SSF49503 161 319 2.89E-20 T 11-10-2018 IPR008972 Cupredoxin AMK58_00960 4b1d387fd03f8ad2616c9d512fb062e0 471 Gene3D G3DSA:2.60.40.420 167 291 2.7E-33 T 11-10-2018 IPR008972 Cupredoxin AMK58_00960 4b1d387fd03f8ad2616c9d512fb062e0 471 ProSitePatterns PS00079 Multicopper oxidases signature 1. 447 467 - T 11-10-2018 IPR033138 Multicopper oxidases, conserved site AMK58_00960 4b1d387fd03f8ad2616c9d512fb062e0 471 Gene3D G3DSA:2.60.40.420 319 470 6.6E-42 T 11-10-2018 IPR008972 Cupredoxin AMK58_19600 0cb9c2353934badcfe853e3d41b097a7 415 SUPERFAMILY SSF55021 336 404 4.2E-8 T 11-10-2018 AMK58_19600 0cb9c2353934badcfe853e3d41b097a7 415 Gene3D G3DSA:3.40.50.1100 62 158 1.6E-105 T 11-10-2018 AMK58_19600 0cb9c2353934badcfe853e3d41b097a7 415 TIGRFAM TIGR01127 ilvA_1Cterm: threonine ammonia-lyase 33 407 1.7E-125 T 11-10-2018 IPR005789 Threonine dehydratase, catabolic GO:0004794|GO:0006567 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 AMK58_19600 0cb9c2353934badcfe853e3d41b097a7 415 Gene3D G3DSA:3.40.50.1100 19 318 1.6E-105 T 11-10-2018 AMK58_19600 0cb9c2353934badcfe853e3d41b097a7 415 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 32 313 9.8E-74 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AMK58_19600 0cb9c2353934badcfe853e3d41b097a7 415 SUPERFAMILY SSF53686 15 321 1.44E-88 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMK58_28430 730f7b2631ba5ead6225835ec9e2f237 361 SMART SM00388 141 205 1.2E-6 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_28430 730f7b2631ba5ead6225835ec9e2f237 361 SUPERFAMILY SSF158472 86 136 1.57E-5 T 11-10-2018 AMK58_28430 730f7b2631ba5ead6225835ec9e2f237 361 SUPERFAMILY SSF47384 124 205 1.02E-12 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_28430 730f7b2631ba5ead6225835ec9e2f237 361 SUPERFAMILY SSF55874 195 358 1.13E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_28430 730f7b2631ba5ead6225835ec9e2f237 361 Pfam PF00672 HAMP domain 86 136 6.9E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_28430 730f7b2631ba5ead6225835ec9e2f237 361 Gene3D G3DSA:1.10.287.130 84 199 1.2E-18 T 11-10-2018 AMK58_28430 730f7b2631ba5ead6225835ec9e2f237 361 PRINTS PR00344 Bacterial sensor protein C-terminal signature 303 313 1.1E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_28430 730f7b2631ba5ead6225835ec9e2f237 361 PRINTS PR00344 Bacterial sensor protein C-terminal signature 344 357 1.1E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_28430 730f7b2631ba5ead6225835ec9e2f237 361 PRINTS PR00344 Bacterial sensor protein C-terminal signature 285 299 1.1E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_28430 730f7b2631ba5ead6225835ec9e2f237 361 PRINTS PR00344 Bacterial sensor protein C-terminal signature 320 338 1.1E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_28430 730f7b2631ba5ead6225835ec9e2f237 361 Gene3D G3DSA:3.30.565.10 210 359 1.6E-33 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_28430 730f7b2631ba5ead6225835ec9e2f237 361 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 249 357 2.9E-17 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_28430 730f7b2631ba5ead6225835ec9e2f237 361 SMART SM00304 86 140 2.0E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_28430 730f7b2631ba5ead6225835ec9e2f237 361 SMART SM00387 249 360 1.4E-27 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_08195 c59e998229164a0ce2b7357e9f4ac3ad 274 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 18 228 5.6E-42 T 11-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 AMK58_08195 c59e998229164a0ce2b7357e9f4ac3ad 274 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 96 129 - T 11-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMK58_08195 c59e998229164a0ce2b7357e9f4ac3ad 274 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 16 253 1.1E-82 T 11-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMK58_08195 c59e998229164a0ce2b7357e9f4ac3ad 274 Gene3D G3DSA:3.30.950.10 132 271 3.6E-41 T 11-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 AMK58_08195 c59e998229164a0ce2b7357e9f4ac3ad 274 SUPERFAMILY SSF53790 12 254 6.15E-70 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 AMK58_08195 c59e998229164a0ce2b7357e9f4ac3ad 274 Gene3D G3DSA:3.40.1010.10 15 131 1.3E-39 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 AMK58_05430 fb4d405b37bae44a31dada5b8c0642c0 636 Gene3D G3DSA:1.25.40.10 152 251 1.2E-7 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_05430 fb4d405b37bae44a31dada5b8c0642c0 636 Pfam PF13181 Tetratricopeptide repeat 154 181 0.12 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_05430 fb4d405b37bae44a31dada5b8c0642c0 636 SUPERFAMILY SSF48452 6 206 1.39E-26 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_05430 fb4d405b37bae44a31dada5b8c0642c0 636 Pfam PF13844 Glycosyl transferase family 41 266 397 8.1E-31 T 11-10-2018 IPR029489 O-GlcNAc transferase, C-terminal KEGG: 00514+2.4.1.255|MetaCyc: PWY-7437|Reactome: R-HSA-3214847|Reactome: R-HSA-5689603 AMK58_05430 fb4d405b37bae44a31dada5b8c0642c0 636 Pfam PF13844 Glycosyl transferase family 41 436 619 6.7E-16 T 11-10-2018 IPR029489 O-GlcNAc transferase, C-terminal KEGG: 00514+2.4.1.255|MetaCyc: PWY-7437|Reactome: R-HSA-3214847|Reactome: R-HSA-5689603 AMK58_05430 fb4d405b37bae44a31dada5b8c0642c0 636 SUPERFAMILY SSF53756 454 589 8.9E-6 T 11-10-2018 AMK58_05430 fb4d405b37bae44a31dada5b8c0642c0 636 Gene3D G3DSA:3.40.50.2000 421 601 1.5E-123 T 11-10-2018 AMK58_05430 fb4d405b37bae44a31dada5b8c0642c0 636 Pfam PF13176 Tetratricopeptide repeat 120 148 0.0095 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_05430 fb4d405b37bae44a31dada5b8c0642c0 636 SMART SM00028 150 183 21.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_05430 fb4d405b37bae44a31dada5b8c0642c0 636 SMART SM00028 82 115 1.4 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_05430 fb4d405b37bae44a31dada5b8c0642c0 636 SMART SM00028 11 44 0.93 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_05430 fb4d405b37bae44a31dada5b8c0642c0 636 SMART SM00028 45 78 190.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_05430 fb4d405b37bae44a31dada5b8c0642c0 636 SMART SM00028 116 149 33.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_05430 fb4d405b37bae44a31dada5b8c0642c0 636 Gene3D G3DSA:1.25.40.10 84 151 3.3E-11 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_05430 fb4d405b37bae44a31dada5b8c0642c0 636 Pfam PF13432 Tetratricopeptide repeat 17 76 7.6E-5 T 11-10-2018 AMK58_05430 fb4d405b37bae44a31dada5b8c0642c0 636 Gene3D G3DSA:1.25.40.10 5 83 9.6E-11 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_05430 fb4d405b37bae44a31dada5b8c0642c0 636 Gene3D G3DSA:3.40.50.11380 256 607 1.5E-123 T 11-10-2018 AMK58_12365 59ff0c35508912beaea85bd416b88946 423 Pfam PF13692 Glycosyl transferases group 1 239 385 1.3E-13 T 11-10-2018 AMK58_12365 59ff0c35508912beaea85bd416b88946 423 SUPERFAMILY SSF53756 26 417 1.2E-44 T 11-10-2018 AMK58_12365 59ff0c35508912beaea85bd416b88946 423 Pfam PF13579 Glycosyl transferase 4-like domain 39 221 7.5E-17 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AMK58_12365 59ff0c35508912beaea85bd416b88946 423 Gene3D G3DSA:3.40.50.2000 24 233 1.3E-14 T 11-10-2018 AMK58_12365 59ff0c35508912beaea85bd416b88946 423 Gene3D G3DSA:3.40.50.2000 234 401 2.3E-24 T 11-10-2018 AMK58_01380 952e1bc4b3cef2e0712229c4ba15d0f6 520 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 274 303 1.3E-10 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_01380 952e1bc4b3cef2e0712229c4ba15d0f6 520 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 435 464 1.3E-10 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_01380 952e1bc4b3cef2e0712229c4ba15d0f6 520 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 387 416 1.3E-10 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_01380 952e1bc4b3cef2e0712229c4ba15d0f6 520 Gene3D G3DSA:1.20.1480.50 133 228 1.2E-12 T 11-10-2018 AMK58_01380 952e1bc4b3cef2e0712229c4ba15d0f6 520 Gene3D G3DSA:1.10.287.950 229 514 2.9E-56 T 11-10-2018 AMK58_01380 952e1bc4b3cef2e0712229c4ba15d0f6 520 SMART SM00304 171 224 3.9E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_01380 952e1bc4b3cef2e0712229c4ba15d0f6 520 SMART SM00283 260 514 3.0E-44 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_01380 952e1bc4b3cef2e0712229c4ba15d0f6 520 Pfam PF00672 HAMP domain 172 220 3.7E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_01380 952e1bc4b3cef2e0712229c4ba15d0f6 520 SUPERFAMILY SSF58104 199 513 3.79E-63 T 11-10-2018 AMK58_01380 952e1bc4b3cef2e0712229c4ba15d0f6 520 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 328 482 6.4E-30 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_01380 952e1bc4b3cef2e0712229c4ba15d0f6 520 Pfam PF12729 Four helix bundle sensory module for signal transduction 1 144 3.2E-8 T 11-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain AMK58_01620 8877ca9464a72a2365d6c40f2ec871aa 1207 SMART SM00387 640 758 2.8E-40 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_01620 8877ca9464a72a2365d6c40f2ec871aa 1207 Pfam PF00672 HAMP domain 340 387 1.2E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_01620 8877ca9464a72a2365d6c40f2ec871aa 1207 Gene3D G3DSA:1.20.1480.50 300 392 2.0E-6 T 11-10-2018 AMK58_01620 8877ca9464a72a2365d6c40f2ec871aa 1207 Pfam PF00072 Response regulator receiver domain 949 1068 4.6E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_01620 8877ca9464a72a2365d6c40f2ec871aa 1207 Gene3D G3DSA:1.20.120.160 1090 1202 5.8E-16 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMK58_01620 8877ca9464a72a2365d6c40f2ec871aa 1207 SUPERFAMILY SSF47384 513 594 1.92E-20 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_01620 8877ca9464a72a2365d6c40f2ec871aa 1207 SMART SM00388 528 593 6.5E-23 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_01620 8877ca9464a72a2365d6c40f2ec871aa 1207 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 640 756 6.7E-30 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_01620 8877ca9464a72a2365d6c40f2ec871aa 1207 Gene3D G3DSA:3.30.565.10 592 758 2.1E-52 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_01620 8877ca9464a72a2365d6c40f2ec871aa 1207 Gene3D G3DSA:1.10.287.130 506 591 2.6E-26 T 11-10-2018 AMK58_01620 8877ca9464a72a2365d6c40f2ec871aa 1207 SUPERFAMILY SSF52172 946 1073 2.99E-34 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_01620 8877ca9464a72a2365d6c40f2ec871aa 1207 PRINTS PR00344 Bacterial sensor protein C-terminal signature 742 755 5.2E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_01620 8877ca9464a72a2365d6c40f2ec871aa 1207 PRINTS PR00344 Bacterial sensor protein C-terminal signature 718 736 5.2E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_01620 8877ca9464a72a2365d6c40f2ec871aa 1207 PRINTS PR00344 Bacterial sensor protein C-terminal signature 701 711 5.2E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_01620 8877ca9464a72a2365d6c40f2ec871aa 1207 PRINTS PR00344 Bacterial sensor protein C-terminal signature 683 697 5.2E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_01620 8877ca9464a72a2365d6c40f2ec871aa 1207 SMART SM00091 398 463 0.0077 T 11-10-2018 IPR000014 PAS domain AMK58_01620 8877ca9464a72a2365d6c40f2ec871aa 1207 Pfam PF00512 His Kinase A (phospho-acceptor) domain 528 593 7.2E-18 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_01620 8877ca9464a72a2365d6c40f2ec871aa 1207 Gene3D G3DSA:3.40.50.2300 944 1072 7.8E-36 T 11-10-2018 AMK58_01620 8877ca9464a72a2365d6c40f2ec871aa 1207 SUPERFAMILY SSF55874 582 755 6.94E-46 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_01620 8877ca9464a72a2365d6c40f2ec871aa 1207 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 395 515 9.4E-11 T 11-10-2018 IPR000014 PAS domain AMK58_01620 8877ca9464a72a2365d6c40f2ec871aa 1207 SUPERFAMILY SSF47226 1051 1191 3.4E-20 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMK58_01620 8877ca9464a72a2365d6c40f2ec871aa 1207 Gene3D G3DSA:1.20.58.920 50 170 2.0E-9 T 11-10-2018 IPR038188 TorS, sensor domain superfamily AMK58_01620 8877ca9464a72a2365d6c40f2ec871aa 1207 Gene3D G3DSA:3.30.450.20 393 505 1.8E-11 T 11-10-2018 AMK58_01620 8877ca9464a72a2365d6c40f2ec871aa 1207 Pfam PF08448 PAS fold 404 510 4.7E-6 T 11-10-2018 IPR013656 PAS fold-4 AMK58_01620 8877ca9464a72a2365d6c40f2ec871aa 1207 Pfam PF01627 Hpt domain 1114 1194 4.8E-12 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMK58_01620 8877ca9464a72a2365d6c40f2ec871aa 1207 SUPERFAMILY SSF55785 387 506 6.47E-16 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_01620 8877ca9464a72a2365d6c40f2ec871aa 1207 SMART SM00448 947 1068 3.6E-32 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_17595 780154497b08b0cd8e3fa88c7e595daa 773 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 626 740 8.4E-19 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_17595 780154497b08b0cd8e3fa88c7e595daa 773 SUPERFAMILY SSF55874 575 740 5.11E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_17595 780154497b08b0cd8e3fa88c7e595daa 773 Pfam PF00512 His Kinase A (phospho-acceptor) domain 516 581 2.2E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_17595 780154497b08b0cd8e3fa88c7e595daa 773 SMART SM00388 513 584 3.1E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_17595 780154497b08b0cd8e3fa88c7e595daa 773 PIRSF PIRSF037532 14 746 2.8E-266 T 11-10-2018 IPR017232 Signal transduction histidine kinase, nitrogen fixation and metabolism regulator AMK58_17595 780154497b08b0cd8e3fa88c7e595daa 773 PRINTS PR00344 Bacterial sensor protein C-terminal signature 702 720 9.1E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_17595 780154497b08b0cd8e3fa88c7e595daa 773 PRINTS PR00344 Bacterial sensor protein C-terminal signature 673 687 9.1E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_17595 780154497b08b0cd8e3fa88c7e595daa 773 PRINTS PR00344 Bacterial sensor protein C-terminal signature 726 739 9.1E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_17595 780154497b08b0cd8e3fa88c7e595daa 773 PRINTS PR00344 Bacterial sensor protein C-terminal signature 691 701 9.1E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_17595 780154497b08b0cd8e3fa88c7e595daa 773 Gene3D G3DSA:3.30.565.10 585 747 2.6E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_17595 780154497b08b0cd8e3fa88c7e595daa 773 Pfam PF08448 PAS fold 403 505 3.4E-5 T 11-10-2018 IPR013656 PAS fold-4 AMK58_17595 780154497b08b0cd8e3fa88c7e595daa 773 SUPERFAMILY SSF55785 381 503 6.66E-11 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_17595 780154497b08b0cd8e3fa88c7e595daa 773 Pfam PF00672 HAMP domain 328 376 1.7E-11 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_17595 780154497b08b0cd8e3fa88c7e595daa 773 SUPERFAMILY SSF47384 509 582 1.18E-10 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_17595 780154497b08b0cd8e3fa88c7e595daa 773 SUPERFAMILY SSF158472 328 377 2.75E-10 T 11-10-2018 AMK58_17595 780154497b08b0cd8e3fa88c7e595daa 773 SMART SM00304 327 380 1.7E-13 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_17595 780154497b08b0cd8e3fa88c7e595daa 773 Gene3D G3DSA:3.30.450.20 385 502 7.4E-14 T 11-10-2018 AMK58_17595 780154497b08b0cd8e3fa88c7e595daa 773 SMART SM00387 625 742 3.4E-24 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_17595 780154497b08b0cd8e3fa88c7e595daa 773 Gene3D G3DSA:1.10.287.130 503 581 6.8E-11 T 11-10-2018 AMK58_17595 780154497b08b0cd8e3fa88c7e595daa 773 Gene3D G3DSA:1.20.1480.50 291 384 1.2E-11 T 11-10-2018 AMK58_10455 46e75326e61f56c698f0b27890a71756 65 Gene3D G3DSA:1.20.5.1030 4 60 1.9E-15 T 11-10-2018 IPR038379 SecE superfamily AMK58_10455 46e75326e61f56c698f0b27890a71756 65 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 8 60 1.0E-17 T 11-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMK58_10455 46e75326e61f56c698f0b27890a71756 65 Hamap MF_00422 Protein translocase subunit SecE [secE]. 4 60 12.119 T 11-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMK58_10455 46e75326e61f56c698f0b27890a71756 65 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 8 61 1.9E-17 T 11-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 AMK58_04140 6c1876f4aca0fee942b6d7bdf08d068c 391 Pfam PF00989 PAS fold 20 98 5.2E-9 T 11-10-2018 IPR013767 PAS fold GO:0006355 AMK58_04140 6c1876f4aca0fee942b6d7bdf08d068c 391 Gene3D G3DSA:3.30.565.10 229 385 5.2E-32 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_04140 6c1876f4aca0fee942b6d7bdf08d068c 391 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 276 383 3.2E-20 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_04140 6c1876f4aca0fee942b6d7bdf08d068c 391 SMART SM00387 275 387 1.7E-19 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_04140 6c1876f4aca0fee942b6d7bdf08d068c 391 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 20 138 1.3E-11 T 11-10-2018 IPR000014 PAS domain AMK58_04140 6c1876f4aca0fee942b6d7bdf08d068c 391 SUPERFAMILY SSF55785 17 131 1.52E-12 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_04140 6c1876f4aca0fee942b6d7bdf08d068c 391 SUPERFAMILY SSF55874 221 383 3.67E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_04140 6c1876f4aca0fee942b6d7bdf08d068c 391 PRINTS PR00344 Bacterial sensor protein C-terminal signature 347 365 2.4E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_04140 6c1876f4aca0fee942b6d7bdf08d068c 391 PRINTS PR00344 Bacterial sensor protein C-terminal signature 371 384 2.4E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_04140 6c1876f4aca0fee942b6d7bdf08d068c 391 PRINTS PR00344 Bacterial sensor protein C-terminal signature 312 326 2.4E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_04140 6c1876f4aca0fee942b6d7bdf08d068c 391 SMART SM00091 17 85 2.1E-6 T 11-10-2018 IPR000014 PAS domain AMK58_04140 6c1876f4aca0fee942b6d7bdf08d068c 391 Gene3D G3DSA:1.10.287.130 146 228 2.7E-6 T 11-10-2018 AMK58_04140 6c1876f4aca0fee942b6d7bdf08d068c 391 Gene3D G3DSA:3.30.450.20 16 145 1.1E-12 T 11-10-2018 AMK58_04140 6c1876f4aca0fee942b6d7bdf08d068c 391 SUPERFAMILY SSF47384 144 231 2.16E-8 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_07775 f3814a4750aaad0bcac7386cb3b259f7 210 Pfam PF02223 Thymidylate kinase 9 199 7.4E-49 T 11-10-2018 IPR039430 Thymidylate kinase-like domain KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 AMK58_07775 f3814a4750aaad0bcac7386cb3b259f7 210 Gene3D G3DSA:3.40.50.300 1 208 7.6E-65 T 11-10-2018 AMK58_07775 f3814a4750aaad0bcac7386cb3b259f7 210 Hamap MF_00165 Thymidylate kinase [tmk]. 5 207 29.552 T 11-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 AMK58_07775 f3814a4750aaad0bcac7386cb3b259f7 210 SUPERFAMILY SSF52540 1 206 2.68E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_07775 f3814a4750aaad0bcac7386cb3b259f7 210 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 1 199 1.7E-50 T 11-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 AMK58_07775 f3814a4750aaad0bcac7386cb3b259f7 210 ProSitePatterns PS01331 Thymidylate kinase signature. 94 106 - T 11-10-2018 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 AMK58_11895 8d6a70e3cff45df510be3d890ae0a645 317 Pfam PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain 81 144 3.5E-11 T 11-10-2018 IPR015375 NADH pyrophosphatase-like, N-terminal GO:0016787 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 AMK58_11895 8d6a70e3cff45df510be3d890ae0a645 317 Pfam PF00293 NUDIX domain 183 287 4.5E-14 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMK58_11895 8d6a70e3cff45df510be3d890ae0a645 317 SUPERFAMILY SSF55811 131 313 3.25E-40 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMK58_11895 8d6a70e3cff45df510be3d890ae0a645 317 Gene3D G3DSA:3.90.79.10 182 316 3.5E-35 T 11-10-2018 AMK58_11895 8d6a70e3cff45df510be3d890ae0a645 317 Gene3D G3DSA:3.90.79.20 52 180 5.3E-7 T 11-10-2018 AMK58_11895 8d6a70e3cff45df510be3d890ae0a645 317 Pfam PF09297 NADH pyrophosphatase zinc ribbon domain 146 179 5.9E-8 T 11-10-2018 IPR015376 Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 AMK58_06135 2ce8f90fefbcd15d952db66c58cc9964 430 Gene3D G3DSA:3.10.20.600 232 328 1.7E-43 T 11-10-2018 AMK58_06135 2ce8f90fefbcd15d952db66c58cc9964 430 Pfam PF10531 SLBB domain 243 292 1.2E-9 T 11-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06135 2ce8f90fefbcd15d952db66c58cc9964 430 SUPERFAMILY SSF140490 327 423 1.44E-36 T 11-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06135 2ce8f90fefbcd15d952db66c58cc9964 430 SUPERFAMILY SSF142984 241 326 1.22E-24 T 11-10-2018 AMK58_06135 2ce8f90fefbcd15d952db66c58cc9964 430 SMART SM00928 331 376 5.8E-26 T 11-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06135 2ce8f90fefbcd15d952db66c58cc9964 430 Gene3D G3DSA:1.20.1440.230 329 429 5.3E-39 T 11-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06135 2ce8f90fefbcd15d952db66c58cc9964 430 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 47 219 3.3E-50 T 11-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06135 2ce8f90fefbcd15d952db66c58cc9964 430 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 333 415 3.5E-30 T 11-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06135 2ce8f90fefbcd15d952db66c58cc9964 430 Gene3D G3DSA:3.40.50.11540 52 230 1.0E-83 T 11-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06135 2ce8f90fefbcd15d952db66c58cc9964 430 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 8 417 5.8E-199 T 11-10-2018 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06135 2ce8f90fefbcd15d952db66c58cc9964 430 SUPERFAMILY SSF142019 3 240 2.09E-86 T 11-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06135 2ce8f90fefbcd15d952db66c58cc9964 430 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 344 355 - T 11-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06135 2ce8f90fefbcd15d952db66c58cc9964 430 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 167 182 - T 11-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_17495 4831672e31a09d0b1e56fb418197c9ab 789 SMART SM00732 324 423 8.5E-37 T 11-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 AMK58_17495 4831672e31a09d0b1e56fb418197c9ab 789 Gene3D G3DSA:1.10.3500.10 113 497 2.7E-152 T 11-10-2018 IPR023323 Tex-like domain superfamily AMK58_17495 4831672e31a09d0b1e56fb418197c9ab 789 SUPERFAMILY SSF53098 320 468 4.02E-50 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMK58_17495 4831672e31a09d0b1e56fb418197c9ab 789 SMART SM00316 648 719 1.1E-23 T 11-10-2018 IPR022967 RNA-binding domain, S1 AMK58_17495 4831672e31a09d0b1e56fb418197c9ab 789 SUPERFAMILY SSF50249 637 725 8.21E-25 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_17495 4831672e31a09d0b1e56fb418197c9ab 789 SUPERFAMILY SSF47781 469 557 2.67E-27 T 11-10-2018 IPR010994 RuvA domain 2-like AMK58_17495 4831672e31a09d0b1e56fb418197c9ab 789 Gene3D G3DSA:1.10.10.650 3 110 4.6E-41 T 11-10-2018 IPR023319 Tex-like protein, HTH domain superfamily AMK58_17495 4831672e31a09d0b1e56fb418197c9ab 789 SUPERFAMILY SSF47781 559 631 5.78E-20 T 11-10-2018 IPR010994 RuvA domain 2-like AMK58_17495 4831672e31a09d0b1e56fb418197c9ab 789 Gene3D G3DSA:1.10.150.310 498 629 2.3E-50 T 11-10-2018 AMK58_17495 4831672e31a09d0b1e56fb418197c9ab 789 SUPERFAMILY SSF158832 4 319 3.4E-119 T 11-10-2018 AMK58_17495 4831672e31a09d0b1e56fb418197c9ab 789 Pfam PF16921 Tex protein YqgF-like domain 325 450 9.3E-51 T 11-10-2018 IPR032639 Tex protein, YqgF-like domain AMK58_17495 4831672e31a09d0b1e56fb418197c9ab 789 Pfam PF09371 Tex-like protein N-terminal domain 10 194 2.1E-69 T 11-10-2018 IPR018974 Tex-like protein, N-terminal AMK58_17495 4831672e31a09d0b1e56fb418197c9ab 789 Pfam PF12836 Helix-hairpin-helix motif 490 554 2.9E-28 T 11-10-2018 AMK58_17495 4831672e31a09d0b1e56fb418197c9ab 789 Gene3D G3DSA:2.40.50.140 630 723 2.4E-28 T 11-10-2018 AMK58_17495 4831672e31a09d0b1e56fb418197c9ab 789 Gene3D G3DSA:3.30.420.140 323 450 2.7E-152 T 11-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 AMK58_17495 4831672e31a09d0b1e56fb418197c9ab 789 Pfam PF00575 S1 RNA binding domain 647 719 3.8E-20 T 11-10-2018 IPR003029 S1 domain GO:0003676 AMK58_06430 455c27c5998617a45d6f48e0b7aadea7 251 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 7 241 3.9E-56 T 11-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_06430 455c27c5998617a45d6f48e0b7aadea7 251 SUPERFAMILY SSF51351 3 247 6.41E-88 T 11-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_06430 455c27c5998617a45d6f48e0b7aadea7 251 ProSitePatterns PS00171 Triosephosphate isomerase active site. 167 177 - T 11-10-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_06430 455c27c5998617a45d6f48e0b7aadea7 251 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 4 249 56.293 T 11-10-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_06430 455c27c5998617a45d6f48e0b7aadea7 251 Gene3D G3DSA:3.20.20.70 1 251 1.5E-94 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_06430 455c27c5998617a45d6f48e0b7aadea7 251 Pfam PF00121 Triosephosphate isomerase 6 246 2.1E-80 T 11-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_16230 874f39c886bdc5adc4658bdbccb9f2bc 549 SUPERFAMILY SSF81442 29 535 1.28E-159 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_16230 874f39c886bdc5adc4658bdbccb9f2bc 549 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 260 314 - T 11-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_16230 874f39c886bdc5adc4658bdbccb9f2bc 549 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 41 483 1.4E-131 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_16230 874f39c886bdc5adc4658bdbccb9f2bc 549 PRINTS PR01165 Cytochrome c oxidase subunit I signature 363 381 1.1E-93 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_16230 874f39c886bdc5adc4658bdbccb9f2bc 549 PRINTS PR01165 Cytochrome c oxidase subunit I signature 391 410 1.1E-93 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_16230 874f39c886bdc5adc4658bdbccb9f2bc 549 PRINTS PR01165 Cytochrome c oxidase subunit I signature 32 57 1.1E-93 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_16230 874f39c886bdc5adc4658bdbccb9f2bc 549 PRINTS PR01165 Cytochrome c oxidase subunit I signature 304 319 1.1E-93 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_16230 874f39c886bdc5adc4658bdbccb9f2bc 549 PRINTS PR01165 Cytochrome c oxidase subunit I signature 441 462 1.1E-93 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_16230 874f39c886bdc5adc4658bdbccb9f2bc 549 PRINTS PR01165 Cytochrome c oxidase subunit I signature 107 131 1.1E-93 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_16230 874f39c886bdc5adc4658bdbccb9f2bc 549 PRINTS PR01165 Cytochrome c oxidase subunit I signature 178 196 1.1E-93 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_16230 874f39c886bdc5adc4658bdbccb9f2bc 549 PRINTS PR01165 Cytochrome c oxidase subunit I signature 207 226 1.1E-93 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_16230 874f39c886bdc5adc4658bdbccb9f2bc 549 PRINTS PR01165 Cytochrome c oxidase subunit I signature 148 160 1.1E-93 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_16230 874f39c886bdc5adc4658bdbccb9f2bc 549 PRINTS PR01165 Cytochrome c oxidase subunit I signature 258 279 1.1E-93 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_16230 874f39c886bdc5adc4658bdbccb9f2bc 549 PRINTS PR01165 Cytochrome c oxidase subunit I signature 79 102 1.1E-93 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_16230 874f39c886bdc5adc4658bdbccb9f2bc 549 PRINTS PR01165 Cytochrome c oxidase subunit I signature 328 349 1.1E-93 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_16230 874f39c886bdc5adc4658bdbccb9f2bc 549 Gene3D G3DSA:1.20.210.10 18 540 1.0E-180 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_12310 1ab5862fb7ccf6805ceea1c37acc0921 278 Pfam PF01061 ABC-2 type transporter 42 233 1.1E-9 T 11-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 AMK58_12310 1ab5862fb7ccf6805ceea1c37acc0921 278 PRINTS PR00164 ABC-2 type transport system membrane protein signature 152 176 8.2E-5 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMK58_12310 1ab5862fb7ccf6805ceea1c37acc0921 278 PRINTS PR00164 ABC-2 type transport system membrane protein signature 190 209 8.2E-5 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMK58_12310 1ab5862fb7ccf6805ceea1c37acc0921 278 PRINTS PR00164 ABC-2 type transport system membrane protein signature 210 229 8.2E-5 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMK58_21805 7fe461296037447c8708504959e16f26 830 SMART SM00926 40 94 6.9E-11 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_21805 7fe461296037447c8708504959e16f26 830 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 45 63 - T 11-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 AMK58_21805 7fe461296037447c8708504959e16f26 830 Gene3D G3DSA:3.40.50.740 97 625 0.0 T 11-10-2018 AMK58_21805 7fe461296037447c8708504959e16f26 830 Gene3D G3DSA:2.40.40.20 706 829 4.3E-47 T 11-10-2018 AMK58_21805 7fe461296037447c8708504959e16f26 830 Gene3D G3DSA:3.40.228.10 176 705 0.0 T 11-10-2018 AMK58_21805 7fe461296037447c8708504959e16f26 830 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 2 28 3.3E-5 T 11-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal AMK58_21805 7fe461296037447c8708504959e16f26 830 SUPERFAMILY SSF53706 38 702 3.93E-203 T 11-10-2018 AMK58_21805 7fe461296037447c8708504959e16f26 830 TIGRFAM TIGR01706 NAPA: periplasmic nitrate reductase, large subunit 2 829 0.0 T 11-10-2018 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042597|GO:0055114 KEGG: 00910+1.9.6.1|MetaCyc: PWY-5674 AMK58_21805 7fe461296037447c8708504959e16f26 830 Pfam PF01568 Molydopterin dinucleotide binding domain 716 824 1.3E-25 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 AMK58_21805 7fe461296037447c8708504959e16f26 830 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 42 93 3.4E-15 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_21805 7fe461296037447c8708504959e16f26 830 Pfam PF00384 Molybdopterin oxidoreductase 97 570 9.6E-96 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_21805 7fe461296037447c8708504959e16f26 830 Gene3D G3DSA:3.30.200.210 41 668 0.0 T 11-10-2018 AMK58_21805 7fe461296037447c8708504959e16f26 830 Hamap MF_01630 Periplasmic nitrate reductase [napA]. 1 830 32.124 T 11-10-2018 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042597|GO:0055114 KEGG: 00910+1.9.6.1|MetaCyc: PWY-5674 AMK58_21805 7fe461296037447c8708504959e16f26 830 SUPERFAMILY SSF50692 690 828 1.45E-41 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily AMK58_09245 18bf6f643ee0c3f0996d2b64dabccc69 158 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 54 156 6.6E-44 T 11-10-2018 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal GO:0009279 AMK58_09245 18bf6f643ee0c3f0996d2b64dabccc69 158 Gene3D G3DSA:3.30.1330.60 27 157 3.4E-40 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMK58_09245 18bf6f643ee0c3f0996d2b64dabccc69 158 Pfam PF00691 OmpA family 56 151 6.2E-23 T 11-10-2018 IPR006665 OmpA-like domain AMK58_09245 18bf6f643ee0c3f0996d2b64dabccc69 158 ProSitePatterns PS01068 OmpA-like domain. 89 133 - T 11-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 AMK58_09245 18bf6f643ee0c3f0996d2b64dabccc69 158 Hamap MF_02204 Peptidoglycan-associated lipoprotein [pal]. 1 157 31.697 T 11-10-2018 IPR039001 Peptidoglycan-associated lipoprotein GO:0009279|GO:0051301 AMK58_09245 18bf6f643ee0c3f0996d2b64dabccc69 158 SUPERFAMILY SSF103088 45 154 4.05E-37 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMK58_09245 18bf6f643ee0c3f0996d2b64dabccc69 158 PRINTS PR01021 OMPA domain signature 57 79 2.9E-19 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMK58_09245 18bf6f643ee0c3f0996d2b64dabccc69 158 PRINTS PR01021 OMPA domain signature 87 102 2.9E-19 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMK58_09245 18bf6f643ee0c3f0996d2b64dabccc69 158 PRINTS PR01021 OMPA domain signature 102 118 2.9E-19 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMK58_09020 86320d5352a4f8111de4fbff018e4ff7 825 SMART SM00487 19 228 2.2E-28 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMK58_09020 86320d5352a4f8111de4fbff018e4ff7 825 Pfam PF08494 DEAD/H associated 592 777 2.7E-44 T 11-10-2018 IPR013701 DEAD/H associated GO:0005524|GO:0016818 AMK58_09020 86320d5352a4f8111de4fbff018e4ff7 825 Gene3D G3DSA:3.40.50.300 231 375 7.5E-26 T 11-10-2018 AMK58_09020 86320d5352a4f8111de4fbff018e4ff7 825 PIRSF PIRSF037307 4 814 1.8E-198 T 11-10-2018 IPR017170 Lhr-like ATP-dependent RNA helicase, predicted GO:0005524|GO:0016818 AMK58_09020 86320d5352a4f8111de4fbff018e4ff7 825 Pfam PF00270 DEAD/DEAH box helicase 25 193 2.9E-23 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMK58_09020 86320d5352a4f8111de4fbff018e4ff7 825 SUPERFAMILY SSF52540 33 360 7.72E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_09020 86320d5352a4f8111de4fbff018e4ff7 825 Gene3D G3DSA:3.40.50.300 12 207 1.6E-46 T 11-10-2018 AMK58_09020 86320d5352a4f8111de4fbff018e4ff7 825 TIGRFAM TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated 11 805 0.0 T 11-10-2018 IPR026362 DEXH box helicase, DNA ligase-associated AMK58_09020 86320d5352a4f8111de4fbff018e4ff7 825 SMART SM00490 269 354 7.0E-15 T 11-10-2018 IPR001650 Helicase, C-terminal AMK58_09020 86320d5352a4f8111de4fbff018e4ff7 825 Pfam PF00271 Helicase conserved C-terminal domain 246 349 1.9E-16 T 11-10-2018 IPR001650 Helicase, C-terminal AMK58_14485 76a3e90109d1c686460e644ee08882b1 645 SUPERFAMILY SSF53756 411 625 6.91E-7 T 11-10-2018 AMK58_14485 76a3e90109d1c686460e644ee08882b1 645 SMART SM00028 114 147 84.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14485 76a3e90109d1c686460e644ee08882b1 645 SMART SM00028 44 77 140.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14485 76a3e90109d1c686460e644ee08882b1 645 SMART SM00028 148 181 24.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14485 76a3e90109d1c686460e644ee08882b1 645 SMART SM00028 78 111 0.82 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14485 76a3e90109d1c686460e644ee08882b1 645 Gene3D G3DSA:3.40.50.2000 431 610 7.8E-145 T 11-10-2018 AMK58_14485 76a3e90109d1c686460e644ee08882b1 645 Pfam PF13844 Glycosyl transferase family 41 274 427 3.0E-32 T 11-10-2018 IPR029489 O-GlcNAc transferase, C-terminal KEGG: 00514+2.4.1.255|MetaCyc: PWY-7437|Reactome: R-HSA-3214847|Reactome: R-HSA-5689603 AMK58_14485 76a3e90109d1c686460e644ee08882b1 645 Pfam PF13844 Glycosyl transferase family 41 433 628 6.1E-46 T 11-10-2018 IPR029489 O-GlcNAc transferase, C-terminal KEGG: 00514+2.4.1.255|MetaCyc: PWY-7437|Reactome: R-HSA-3214847|Reactome: R-HSA-5689603 AMK58_14485 76a3e90109d1c686460e644ee08882b1 645 Gene3D G3DSA:1.25.40.10 13 115 4.6E-15 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_14485 76a3e90109d1c686460e644ee08882b1 645 Gene3D G3DSA:1.25.40.10 117 156 1.4E-5 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_14485 76a3e90109d1c686460e644ee08882b1 645 Gene3D G3DSA:1.25.40.10 157 218 2.2E-8 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_14485 76a3e90109d1c686460e644ee08882b1 645 SUPERFAMILY SSF48452 16 182 4.46E-22 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_14485 76a3e90109d1c686460e644ee08882b1 645 Gene3D G3DSA:3.40.50.11380 263 617 7.8E-145 T 11-10-2018 AMK58_14485 76a3e90109d1c686460e644ee08882b1 645 Pfam PF13181 Tetratricopeptide repeat 78 109 0.054 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_04625 c3d4de6542eaa1779d62e4391ff4a395 466 SUPERFAMILY SSF53807 11 434 1.6E-123 T 11-10-2018 AMK58_04625 c3d4de6542eaa1779d62e4391ff4a395 466 Gene3D G3DSA:1.20.89.10 269 432 7.7E-117 T 11-10-2018 AMK58_04625 c3d4de6542eaa1779d62e4391ff4a395 466 TIGRFAM TIGR01285 nifN: nitrogenase molybdenum-iron cofactor biosynthesis protein NifN 9 429 2.7E-170 T 11-10-2018 IPR005975 Nitrogenase molybdenum-iron cofactor biosynthesis protein GO:0009399|GO:0065003 AMK58_04625 c3d4de6542eaa1779d62e4391ff4a395 466 Gene3D G3DSA:3.40.50.1980 13 411 7.7E-117 T 11-10-2018 AMK58_04625 c3d4de6542eaa1779d62e4391ff4a395 466 Gene3D G3DSA:3.40.50.1980 22 162 7.7E-117 T 11-10-2018 AMK58_04625 c3d4de6542eaa1779d62e4391ff4a395 466 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 22 428 3.4E-112 T 11-10-2018 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 AMK58_04625 c3d4de6542eaa1779d62e4391ff4a395 466 Gene3D G3DSA:3.40.50.1980 163 418 7.7E-117 T 11-10-2018 AMK58_04625 c3d4de6542eaa1779d62e4391ff4a395 466 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 40 47 - T 11-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 AMK58_05300 8aa9ff8b34c7bd121c3d231817d6fe86 363 SUPERFAMILY SSF53474 155 329 9.34E-29 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_05300 8aa9ff8b34c7bd121c3d231817d6fe86 363 SUPERFAMILY SSF53474 5 145 3.4E-17 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_05300 8aa9ff8b34c7bd121c3d231817d6fe86 363 Gene3D G3DSA:3.40.50.1820 14 307 5.4E-37 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_05300 8aa9ff8b34c7bd121c3d231817d6fe86 363 Pfam PF10503 Esterase PHB depolymerase 42 279 6.3E-23 T 11-10-2018 IPR010126 Esterase, PHB depolymerase GO:0005576|GO:0016787 AMK58_08310 98f4711c7b8fd8b8f8046e99d988cd82 372 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 14 365 2.1E-100 T 11-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 AMK58_08310 98f4711c7b8fd8b8f8046e99d988cd82 372 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 153 365 7.9E-52 T 11-10-2018 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 AMK58_08310 98f4711c7b8fd8b8f8046e99d988cd82 372 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 11 106 1.5E-15 T 11-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain AMK58_08310 98f4711c7b8fd8b8f8046e99d988cd82 372 SUPERFAMILY SSF53597 152 368 1.4E-59 T 11-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 AMK58_08310 98f4711c7b8fd8b8f8046e99d988cd82 372 Gene3D G3DSA:3.40.140.10 4 148 8.5E-44 T 11-10-2018 AMK58_08310 98f4711c7b8fd8b8f8046e99d988cd82 372 Gene3D G3DSA:3.40.430.10 149 369 6.9E-69 T 11-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 AMK58_08310 98f4711c7b8fd8b8f8046e99d988cd82 372 Pfam PF01872 RibD C-terminal domain 157 363 5.2E-44 T 11-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 AMK58_08310 98f4711c7b8fd8b8f8046e99d988cd82 372 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 57 95 - T 11-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 AMK58_08310 98f4711c7b8fd8b8f8046e99d988cd82 372 SUPERFAMILY SSF53927 10 151 3.01E-45 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 AMK58_08310 98f4711c7b8fd8b8f8046e99d988cd82 372 PIRSF PIRSF006769 6 372 3.4E-127 T 11-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 AMK58_03990 74e779d59ecbc177868c5a2dc90c6980 245 Pfam PF05099 Tellurite resistance protein TerB 45 165 6.7E-32 T 11-10-2018 IPR007791 Co-chaperone DjlA, N-terminal AMK58_03990 74e779d59ecbc177868c5a2dc90c6980 245 PRINTS PR00625 DnaJ domain signature 199 214 2.2E-5 T 11-10-2018 IPR001623 DnaJ domain AMK58_03990 74e779d59ecbc177868c5a2dc90c6980 245 PRINTS PR00625 DnaJ domain signature 223 243 2.2E-5 T 11-10-2018 IPR001623 DnaJ domain AMK58_03990 74e779d59ecbc177868c5a2dc90c6980 245 PRINTS PR00625 DnaJ domain signature 181 199 2.2E-5 T 11-10-2018 IPR001623 DnaJ domain AMK58_03990 74e779d59ecbc177868c5a2dc90c6980 245 Gene3D G3DSA:1.10.3680.10 41 162 1.7E-16 T 11-10-2018 IPR029024 TerB-like AMK58_03990 74e779d59ecbc177868c5a2dc90c6980 245 Gene3D G3DSA:1.10.287.110 163 244 2.7E-11 T 11-10-2018 IPR036869 Chaperone J-domain superfamily AMK58_03990 74e779d59ecbc177868c5a2dc90c6980 245 SUPERFAMILY SSF158682 11 192 5.62E-24 T 11-10-2018 IPR029024 TerB-like AMK58_03990 74e779d59ecbc177868c5a2dc90c6980 245 SUPERFAMILY SSF46565 174 244 5.08E-15 T 11-10-2018 IPR036869 Chaperone J-domain superfamily AMK58_03990 74e779d59ecbc177868c5a2dc90c6980 245 SMART SM00271 178 243 3.7E-10 T 11-10-2018 IPR001623 DnaJ domain AMK58_03990 74e779d59ecbc177868c5a2dc90c6980 245 Pfam PF00226 DnaJ domain 179 243 7.3E-9 T 11-10-2018 IPR001623 DnaJ domain AMK58_05785 a23afe8f780edb993d7fae82775cecd9 296 Gene3D G3DSA:3.30.565.10 134 289 1.9E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_05785 a23afe8f780edb993d7fae82775cecd9 296 Pfam PF00512 His Kinase A (phospho-acceptor) domain 50 126 3.0E-6 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_05785 a23afe8f780edb993d7fae82775cecd9 296 SMART SM00387 176 289 2.0E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_05785 a23afe8f780edb993d7fae82775cecd9 296 SUPERFAMILY SSF47384 45 115 6.28E-6 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_05785 a23afe8f780edb993d7fae82775cecd9 296 PRINTS PR00344 Bacterial sensor protein C-terminal signature 273 286 6.0E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_05785 a23afe8f780edb993d7fae82775cecd9 296 PRINTS PR00344 Bacterial sensor protein C-terminal signature 248 266 6.0E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_05785 a23afe8f780edb993d7fae82775cecd9 296 PRINTS PR00344 Bacterial sensor protein C-terminal signature 235 245 6.0E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_05785 a23afe8f780edb993d7fae82775cecd9 296 PRINTS PR00344 Bacterial sensor protein C-terminal signature 217 231 6.0E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_05785 a23afe8f780edb993d7fae82775cecd9 296 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 178 286 3.5E-21 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_05785 a23afe8f780edb993d7fae82775cecd9 296 SUPERFAMILY SSF55874 125 290 1.44E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_05785 a23afe8f780edb993d7fae82775cecd9 296 Gene3D G3DSA:1.10.287.130 26 128 6.4E-21 T 11-10-2018 AMK58_00730 1d853f9436706f638667674ac8320d5d 389 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 5 104 2.1E-35 T 11-10-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMK58_00730 1d853f9436706f638667674ac8320d5d 389 Gene3D G3DSA:3.30.300.10 7 235 1.5E-162 T 11-10-2018 AMK58_00730 1d853f9436706f638667674ac8320d5d 389 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 119 129 - T 11-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMK58_00730 1d853f9436706f638667674ac8320d5d 389 Gene3D G3DSA:3.30.300.10 105 379 1.5E-162 T 11-10-2018 AMK58_00730 1d853f9436706f638667674ac8320d5d 389 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 4 388 48.701 T 11-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMK58_00730 1d853f9436706f638667674ac8320d5d 389 PIRSF PIRSF000497 1 388 7.8E-159 T 11-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMK58_00730 1d853f9436706f638667674ac8320d5d 389 SUPERFAMILY SSF55973 5 111 2.55E-36 T 11-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMK58_00730 1d853f9436706f638667674ac8320d5d 389 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 261 269 - T 11-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMK58_00730 1d853f9436706f638667674ac8320d5d 389 Gene3D G3DSA:3.30.300.10 13 272 1.5E-162 T 11-10-2018 AMK58_00730 1d853f9436706f638667674ac8320d5d 389 SUPERFAMILY SSF55973 115 234 7.46E-46 T 11-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMK58_00730 1d853f9436706f638667674ac8320d5d 389 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 7 387 9.6E-152 T 11-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMK58_00730 1d853f9436706f638667674ac8320d5d 389 Pfam PF02772 S-adenosylmethionine synthetase, central domain 118 233 3.0E-39 T 11-10-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMK58_00730 1d853f9436706f638667674ac8320d5d 389 SUPERFAMILY SSF55973 235 386 5.49E-65 T 11-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMK58_00730 1d853f9436706f638667674ac8320d5d 389 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 235 377 4.5E-65 T 11-10-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMK58_19390 481500db4848c76f2bed45266d44aff7 222 Pfam PF13462 Thioredoxin 52 219 5.4E-40 T 11-10-2018 IPR012336 Thioredoxin-like fold AMK58_19390 481500db4848c76f2bed45266d44aff7 222 Gene3D G3DSA:3.40.30.10 38 222 1.4E-44 T 11-10-2018 AMK58_19390 481500db4848c76f2bed45266d44aff7 222 ProSitePatterns PS00194 Thioredoxin family active site. 65 83 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AMK58_19390 481500db4848c76f2bed45266d44aff7 222 SUPERFAMILY SSF52833 46 218 2.13E-36 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_06335 80a8afa498142c119711bdb123439c3b 306 SUPERFAMILY SSF53850 92 288 1.99E-27 T 11-10-2018 AMK58_06335 80a8afa498142c119711bdb123439c3b 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 4.7E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_06335 80a8afa498142c119711bdb123439c3b 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 4.7E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_06335 80a8afa498142c119711bdb123439c3b 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 4.7E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_06335 80a8afa498142c119711bdb123439c3b 306 Gene3D G3DSA:1.10.10.10 4 94 1.5E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_06335 80a8afa498142c119711bdb123439c3b 306 Pfam PF03466 LysR substrate binding domain 90 285 1.3E-25 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_06335 80a8afa498142c119711bdb123439c3b 306 Gene3D G3DSA:3.40.190.10 160 254 1.5E-47 T 11-10-2018 AMK58_06335 80a8afa498142c119711bdb123439c3b 306 SUPERFAMILY SSF46785 4 111 3.64E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_06335 80a8afa498142c119711bdb123439c3b 306 Gene3D G3DSA:3.40.190.10 100 281 1.5E-47 T 11-10-2018 AMK58_06335 80a8afa498142c119711bdb123439c3b 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 6.6E-20 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_27760 d9e409f56c14a6789875b34d806a5866 391 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 237 385 3.4E-49 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMK58_27760 d9e409f56c14a6789875b34d806a5866 391 Gene3D G3DSA:1.10.540.10 2 125 7.8E-30 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMK58_27760 d9e409f56c14a6789875b34d806a5866 391 PIRSF PIRSF016578 2 390 3.1E-20 T 11-10-2018 AMK58_27760 d9e409f56c14a6789875b34d806a5866 391 SUPERFAMILY SSF47203 236 387 2.74E-55 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMK58_27760 d9e409f56c14a6789875b34d806a5866 391 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 14 124 8.7E-27 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMK58_27760 d9e409f56c14a6789875b34d806a5866 391 Gene3D G3DSA:2.40.110.10 127 242 2.1E-38 T 11-10-2018 AMK58_27760 d9e409f56c14a6789875b34d806a5866 391 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 128 223 3.9E-24 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMK58_27760 d9e409f56c14a6789875b34d806a5866 391 SUPERFAMILY SSF56645 7 248 7.72E-70 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMK58_27760 d9e409f56c14a6789875b34d806a5866 391 Gene3D G3DSA:1.20.140.10 243 389 2.0E-52 T 11-10-2018 AMK58_12660 6d49d7738534d732295b92187e5802e7 408 SMART SM00852 185 321 1.5E-6 T 11-10-2018 IPR001453 MoaB/Mog domain AMK58_12660 6d49d7738534d732295b92187e5802e7 408 Pfam PF03453 MoeA N-terminal region (domain I and II) 44 183 1.3E-27 T 11-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMK58_12660 6d49d7738534d732295b92187e5802e7 408 Gene3D G3DSA:3.40.980.10 192 324 2.0E-45 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily AMK58_12660 6d49d7738534d732295b92187e5802e7 408 SUPERFAMILY SSF63867 332 404 1.16E-9 T 11-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMK58_12660 6d49d7738534d732295b92187e5802e7 408 Gene3D G3DSA:2.170.190.11 79 157 2.0E-45 T 11-10-2018 AMK58_12660 6d49d7738534d732295b92187e5802e7 408 SUPERFAMILY SSF63882 55 189 1.22E-30 T 11-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMK58_12660 6d49d7738534d732295b92187e5802e7 408 Gene3D G3DSA:3.90.105.10 62 191 2.0E-45 T 11-10-2018 AMK58_12660 6d49d7738534d732295b92187e5802e7 408 SUPERFAMILY SSF53218 195 325 1.83E-18 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily AMK58_12660 6d49d7738534d732295b92187e5802e7 408 Pfam PF00994 Probable molybdopterin binding domain 208 316 2.6E-10 T 11-10-2018 IPR001453 MoaB/Mog domain AMK58_12660 6d49d7738534d732295b92187e5802e7 408 Gene3D G3DSA:2.40.340.10 333 404 1.3E-9 T 11-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMK58_22215 1adf30d084deb49fccd7f23bf257a987 367 Gene3D G3DSA:2.40.50.140 301 357 4.0E-11 T 11-10-2018 AMK58_22215 1adf30d084deb49fccd7f23bf257a987 367 SUPERFAMILY SSF50331 257 362 4.42E-15 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMK58_22215 1adf30d084deb49fccd7f23bf257a987 367 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_22215 1adf30d084deb49fccd7f23bf257a987 367 Pfam PF08402 TOBE domain 294 365 5.6E-16 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMK58_22215 1adf30d084deb49fccd7f23bf257a987 367 SMART SM00382 47 230 2.3E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_22215 1adf30d084deb49fccd7f23bf257a987 367 Gene3D G3DSA:3.40.50.300 22 241 9.4E-65 T 11-10-2018 AMK58_22215 1adf30d084deb49fccd7f23bf257a987 367 Gene3D G3DSA:2.40.50.940 242 300 4.0E-11 T 11-10-2018 AMK58_22215 1adf30d084deb49fccd7f23bf257a987 367 SUPERFAMILY SSF52540 23 262 1.18E-84 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_22215 1adf30d084deb49fccd7f23bf257a987 367 Pfam PF00005 ABC transporter 40 180 1.0E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_01625 6fd6ae4e5161a5021a969c9a76d63ae0 365 SUPERFAMILY SSF53850 49 272 1.01E-37 T 11-10-2018 AMK58_01625 6fd6ae4e5161a5021a969c9a76d63ae0 365 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 58 266 1.4E-22 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMK58_01625 6fd6ae4e5161a5021a969c9a76d63ae0 365 Gene3D G3DSA:3.40.190.10 47 268 4.1E-46 T 11-10-2018 AMK58_01625 6fd6ae4e5161a5021a969c9a76d63ae0 365 Gene3D G3DSA:3.40.190.10 149 246 4.1E-46 T 11-10-2018 AMK58_01625 6fd6ae4e5161a5021a969c9a76d63ae0 365 SMART SM00062 57 283 1.2E-22 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMK58_05175 8cd6f545cb32e9bea8f6e20573b77631 335 Gene3D G3DSA:3.90.180.10 21 330 7.6E-113 T 11-10-2018 AMK58_05175 8cd6f545cb32e9bea8f6e20573b77631 335 SMART SM00829 18 331 2.9E-55 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMK58_05175 8cd6f545cb32e9bea8f6e20573b77631 335 TIGRFAM TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family 9 333 3.9E-151 T 11-10-2018 IPR014189 Quinone oxidoreductase PIG3 Reactome: R-HSA-6803205 AMK58_05175 8cd6f545cb32e9bea8f6e20573b77631 335 SUPERFAMILY SSF50129 9 148 8.07E-37 T 11-10-2018 IPR011032 GroES-like superfamily AMK58_05175 8cd6f545cb32e9bea8f6e20573b77631 335 SUPERFAMILY SSF51735 120 295 1.49E-55 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_05175 8cd6f545cb32e9bea8f6e20573b77631 335 Gene3D G3DSA:3.40.50.720 128 270 7.6E-113 T 11-10-2018 AMK58_05175 8cd6f545cb32e9bea8f6e20573b77631 335 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 35 106 1.0E-7 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMK58_05175 8cd6f545cb32e9bea8f6e20573b77631 335 Pfam PF00107 Zinc-binding dehydrogenase 159 274 3.3E-33 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMK58_18925 0b4759faf151304fe5855deb390abec9 564 Gene3D G3DSA:1.25.40.10 151 193 4.5E-7 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_18925 0b4759faf151304fe5855deb390abec9 564 Pfam PF13432 Tetratricopeptide repeat 24 71 0.0028 T 11-10-2018 AMK58_18925 0b4759faf151304fe5855deb390abec9 564 Pfam PF13432 Tetratricopeptide repeat 85 140 1.2E-5 T 11-10-2018 AMK58_18925 0b4759faf151304fe5855deb390abec9 564 Pfam PF13432 Tetratricopeptide repeat 233 267 0.0024 T 11-10-2018 AMK58_18925 0b4759faf151304fe5855deb390abec9 564 SMART SM00028 11 44 26.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18925 0b4759faf151304fe5855deb390abec9 564 SMART SM00028 215 248 0.59 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18925 0b4759faf151304fe5855deb390abec9 564 SMART SM00028 147 180 3.3 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18925 0b4759faf151304fe5855deb390abec9 564 SMART SM00028 181 214 0.51 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18925 0b4759faf151304fe5855deb390abec9 564 SMART SM00028 79 112 60.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18925 0b4759faf151304fe5855deb390abec9 564 SMART SM00028 45 78 9.2 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18925 0b4759faf151304fe5855deb390abec9 564 SMART SM00028 113 146 0.0039 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18925 0b4759faf151304fe5855deb390abec9 564 Pfam PF13374 Tetratricopeptide repeat 150 176 0.013 T 11-10-2018 AMK58_18925 0b4759faf151304fe5855deb390abec9 564 Pfam PF13374 Tetratricopeptide repeat 184 210 0.012 T 11-10-2018 AMK58_18925 0b4759faf151304fe5855deb390abec9 564 Gene3D G3DSA:1.25.40.10 194 272 5.8E-13 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_18925 0b4759faf151304fe5855deb390abec9 564 SUPERFAMILY SSF53756 300 543 5.02E-12 T 11-10-2018 AMK58_18925 0b4759faf151304fe5855deb390abec9 564 Gene3D G3DSA:1.25.40.10 2 150 7.9E-28 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_18925 0b4759faf151304fe5855deb390abec9 564 SUPERFAMILY SSF48452 17 267 6.45E-37 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_09725 a469cea5792ef3c96e1ab07b3b417fee 465 SUPERFAMILY SSF158472 190 238 9.29E-8 T 11-10-2018 AMK58_09725 a469cea5792ef3c96e1ab07b3b417fee 465 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 353 458 7.4E-18 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_09725 a469cea5792ef3c96e1ab07b3b417fee 465 SMART SM00304 187 240 1.5E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_09725 a469cea5792ef3c96e1ab07b3b417fee 465 SMART SM00388 241 308 4.4E-7 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_09725 a469cea5792ef3c96e1ab07b3b417fee 465 Gene3D G3DSA:3.30.565.10 314 463 3.5E-32 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_09725 a469cea5792ef3c96e1ab07b3b417fee 465 Pfam PF00512 His Kinase A (phospho-acceptor) domain 243 308 2.1E-7 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_09725 a469cea5792ef3c96e1ab07b3b417fee 465 SMART SM00387 353 464 9.9E-34 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_09725 a469cea5792ef3c96e1ab07b3b417fee 465 Pfam PF00672 HAMP domain 189 237 9.6E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_09725 a469cea5792ef3c96e1ab07b3b417fee 465 SUPERFAMILY SSF47384 224 308 7.26E-13 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_09725 a469cea5792ef3c96e1ab07b3b417fee 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 425 443 9.9E-6 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_09725 a469cea5792ef3c96e1ab07b3b417fee 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 392 406 9.9E-6 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_09725 a469cea5792ef3c96e1ab07b3b417fee 465 Gene3D G3DSA:1.10.287.130 192 308 1.1E-20 T 11-10-2018 AMK58_09725 a469cea5792ef3c96e1ab07b3b417fee 465 SUPERFAMILY SSF55874 299 461 2.75E-36 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_19625 cf1c2476bb7e19618a03f093513e7e57 246 PIRSF PIRSF037208 4 244 2.3E-79 T 11-10-2018 IPR017138 Aspartate/glutamate leucyltransferase GO:0008914|GO:0071596 MetaCyc: PWY-7802 AMK58_19625 cf1c2476bb7e19618a03f093513e7e57 246 Hamap MF_00689 Aspartate/glutamate leucyltransferase [bpt]. 10 238 37.601 T 11-10-2018 IPR017138 Aspartate/glutamate leucyltransferase GO:0008914|GO:0071596 MetaCyc: PWY-7802 AMK58_19625 cf1c2476bb7e19618a03f093513e7e57 246 SUPERFAMILY SSF55729 89 242 7.62E-22 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_19625 cf1c2476bb7e19618a03f093513e7e57 246 Pfam PF04376 Arginine-tRNA-protein transferase, N terminus 21 90 4.1E-16 T 11-10-2018 IPR007471 N-end aminoacyl transferase, N-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7802 AMK58_19625 cf1c2476bb7e19618a03f093513e7e57 246 Pfam PF04377 Arginine-tRNA-protein transferase, C terminus 110 232 2.2E-31 T 11-10-2018 IPR007472 N-end rule aminoacyl transferase, C-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7802 AMK58_19625 cf1c2476bb7e19618a03f093513e7e57 246 Gene3D G3DSA:3.40.630.30 99 238 1.4E-6 T 11-10-2018 AMK58_12045 074d2223798919298c29b80f737e4239 206 SUPERFAMILY SSF47616 84 202 2.23E-31 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMK58_12045 074d2223798919298c29b80f737e4239 206 SUPERFAMILY SSF52833 1 86 6.41E-16 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_12045 074d2223798919298c29b80f737e4239 206 Pfam PF02798 Glutathione S-transferase, N-terminal domain 2 76 1.2E-10 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMK58_12045 074d2223798919298c29b80f737e4239 206 Gene3D G3DSA:3.40.30.10 2 205 2.4E-65 T 11-10-2018 AMK58_12045 074d2223798919298c29b80f737e4239 206 Gene3D G3DSA:1.20.1050.10 86 195 2.4E-65 T 11-10-2018 AMK58_12045 074d2223798919298c29b80f737e4239 206 Pfam PF00043 Glutathione S-transferase, C-terminal domain 127 196 7.1E-14 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal AMK58_06990 6a2d1dc41ffe46542df20b7fdb992769 586 Gene3D G3DSA:3.50.30.10 434 558 8.5E-58 T 11-10-2018 AMK58_06990 6a2d1dc41ffe46542df20b7fdb992769 586 Pfam PF00391 PEP-utilising enzyme, mobile domain 473 552 9.3E-21 T 11-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AMK58_06990 6a2d1dc41ffe46542df20b7fdb992769 586 SUPERFAMILY SSF56059 46 422 1.06E-122 T 11-10-2018 AMK58_06990 6a2d1dc41ffe46542df20b7fdb992769 586 Gene3D G3DSA:3.30.470.20 291 392 1.5E-34 T 11-10-2018 AMK58_06990 6a2d1dc41ffe46542df20b7fdb992769 586 Gene3D G3DSA:3.30.1490.20 59 290 1.4E-91 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMK58_06990 6a2d1dc41ffe46542df20b7fdb992769 586 Gene3D G3DSA:1.10.189.10 396 578 8.5E-58 T 11-10-2018 AMK58_06990 6a2d1dc41ffe46542df20b7fdb992769 586 SUPERFAMILY SSF52009 437 561 2.49E-31 T 11-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 AMK58_06990 6a2d1dc41ffe46542df20b7fdb992769 586 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 66 97 1.2E-6 T 11-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 AMK58_06990 6a2d1dc41ffe46542df20b7fdb992769 586 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 350 406 2.7E-10 T 11-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 AMK58_06990 6a2d1dc41ffe46542df20b7fdb992769 586 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 109 335 7.1E-30 T 11-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 AMK58_06990 6a2d1dc41ffe46542df20b7fdb992769 586 Gene3D G3DSA:1.20.80.30 158 245 1.4E-91 T 11-10-2018 AMK58_15705 a0363533c6cbfd42533681187e2224a4 231 Pfam PF00392 Bacterial regulatory proteins, gntR family 16 75 1.0E-17 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_15705 a0363533c6cbfd42533681187e2224a4 231 Gene3D G3DSA:1.10.10.10 9 76 2.7E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_15705 a0363533c6cbfd42533681187e2224a4 231 Gene3D G3DSA:1.20.120.530 79 226 7.6E-17 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_15705 a0363533c6cbfd42533681187e2224a4 231 SMART SM00345 17 75 1.4E-15 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_15705 a0363533c6cbfd42533681187e2224a4 231 SUPERFAMILY SSF48008 83 217 2.35E-17 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_15705 a0363533c6cbfd42533681187e2224a4 231 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 65 1.2E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_15705 a0363533c6cbfd42533681187e2224a4 231 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 35 49 1.2E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_15705 a0363533c6cbfd42533681187e2224a4 231 SUPERFAMILY SSF46785 12 79 2.5E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_15705 a0363533c6cbfd42533681187e2224a4 231 Pfam PF07729 FCD domain 89 213 7.6E-18 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_15705 a0363533c6cbfd42533681187e2224a4 231 SMART SM00895 85 214 1.6E-5 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_06280 b66f91b3c4a164cc63b359ab34050a47 260 Pfam PF01148 Cytidylyltransferase family 2 251 2.6E-58 T 11-10-2018 AMK58_06280 b66f91b3c4a164cc63b359ab34050a47 260 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 211 237 - T 11-10-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 AMK58_04655 94adae509f288a454127262472187f08 479 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 81 88 - T 11-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 AMK58_04655 94adae509f288a454127262472187f08 479 Gene3D G3DSA:3.40.50.1980 63 205 2.3E-221 T 11-10-2018 AMK58_04655 94adae509f288a454127262472187f08 479 SUPERFAMILY SSF53807 26 478 1.41E-167 T 11-10-2018 AMK58_04655 94adae509f288a454127262472187f08 479 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 62 466 5.5E-113 T 11-10-2018 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 AMK58_04655 94adae509f288a454127262472187f08 479 TIGRFAM TIGR01862 N2-ase-Ialpha: nitrogenase component I, alpha chain 30 472 1.7E-190 T 11-10-2018 IPR010143 Nitrogenase component 1, alpha chain GO:0009399|GO:0016163|GO:0051536|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 AMK58_04655 94adae509f288a454127262472187f08 479 Gene3D G3DSA:3.40.50.1980 206 345 2.3E-221 T 11-10-2018 AMK58_04655 94adae509f288a454127262472187f08 479 TIGRFAM TIGR01282 nifD: nitrogenase molybdenum-iron protein alpha chain 14 479 1.4E-268 T 11-10-2018 IPR005972 Nitrogenase molybdenum-iron protein alpha chain GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 AMK58_04655 94adae509f288a454127262472187f08 479 Gene3D G3DSA:3.40.50.1980 29 474 2.3E-221 T 11-10-2018 AMK58_04655 94adae509f288a454127262472187f08 479 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 152 166 - T 11-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 AMK58_10595 1840dd4ffa3d28ed9c333879d20dc6f2 439 Gene3D G3DSA:3.40.50.2300 155 395 1.7E-131 T 11-10-2018 AMK58_10595 1840dd4ffa3d28ed9c333879d20dc6f2 439 TIGRFAM TIGR03407 urea_ABC_UrtA: urea ABC transporter, urea binding protein 40 405 1.3E-171 T 11-10-2018 IPR017777 Urea ABC transporter, substrate-binding protein UrtA-like AMK58_10595 1840dd4ffa3d28ed9c333879d20dc6f2 439 SUPERFAMILY SSF53822 39 410 1.18E-87 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMK58_10595 1840dd4ffa3d28ed9c333879d20dc6f2 439 Pfam PF13433 Periplasmic binding protein domain 40 408 1.8E-170 T 11-10-2018 AMK58_10595 1840dd4ffa3d28ed9c333879d20dc6f2 439 Gene3D G3DSA:3.40.50.2300 42 376 1.7E-131 T 11-10-2018 AMK58_12615 15f3ba8a21c2052bf4d312a826c5edac 569 SUPERFAMILY SSF50249 115 194 3.35E-12 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_12615 15f3ba8a21c2052bf4d312a826c5edac 569 Gene3D G3DSA:2.40.50.140 454 537 5.3E-19 T 11-10-2018 AMK58_12615 15f3ba8a21c2052bf4d312a826c5edac 569 PIRSF PIRSF002111 1 420 8.4E-175 T 11-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 AMK58_12615 15f3ba8a21c2052bf4d312a826c5edac 569 PIRSF PIRSF002111 364 549 7.6E-46 T 11-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 AMK58_12615 15f3ba8a21c2052bf4d312a826c5edac 569 SUPERFAMILY SSF50249 198 284 1.04E-26 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_12615 15f3ba8a21c2052bf4d312a826c5edac 569 PRINTS PR00681 Ribosomal protein S1 signature 164 184 5.6E-85 T 11-10-2018 AMK58_12615 15f3ba8a21c2052bf4d312a826c5edac 569 PRINTS PR00681 Ribosomal protein S1 signature 30 48 5.6E-85 T 11-10-2018 AMK58_12615 15f3ba8a21c2052bf4d312a826c5edac 569 PRINTS PR00681 Ribosomal protein S1 signature 299 318 5.6E-85 T 11-10-2018 AMK58_12615 15f3ba8a21c2052bf4d312a826c5edac 569 PRINTS PR00681 Ribosomal protein S1 signature 48 62 5.6E-85 T 11-10-2018 AMK58_12615 15f3ba8a21c2052bf4d312a826c5edac 569 PRINTS PR00681 Ribosomal protein S1 signature 339 357 5.6E-85 T 11-10-2018 AMK58_12615 15f3ba8a21c2052bf4d312a826c5edac 569 PRINTS PR00681 Ribosomal protein S1 signature 135 152 5.6E-85 T 11-10-2018 AMK58_12615 15f3ba8a21c2052bf4d312a826c5edac 569 PRINTS PR00681 Ribosomal protein S1 signature 93 112 5.6E-85 T 11-10-2018 AMK58_12615 15f3ba8a21c2052bf4d312a826c5edac 569 PRINTS PR00681 Ribosomal protein S1 signature 117 133 5.6E-85 T 11-10-2018 AMK58_12615 15f3ba8a21c2052bf4d312a826c5edac 569 PRINTS PR00681 Ribosomal protein S1 signature 221 242 5.6E-85 T 11-10-2018 AMK58_12615 15f3ba8a21c2052bf4d312a826c5edac 569 Gene3D G3DSA:2.40.50.140 195 277 3.7E-28 T 11-10-2018 AMK58_12615 15f3ba8a21c2052bf4d312a826c5edac 569 SMART SM00316 199 269 2.2E-28 T 11-10-2018 IPR022967 RNA-binding domain, S1 AMK58_12615 15f3ba8a21c2052bf4d312a826c5edac 569 SMART SM00316 284 356 6.7E-25 T 11-10-2018 IPR022967 RNA-binding domain, S1 AMK58_12615 15f3ba8a21c2052bf4d312a826c5edac 569 SMART SM00316 112 180 4.6E-5 T 11-10-2018 IPR022967 RNA-binding domain, S1 AMK58_12615 15f3ba8a21c2052bf4d312a826c5edac 569 SMART SM00316 371 443 3.5E-21 T 11-10-2018 IPR022967 RNA-binding domain, S1 AMK58_12615 15f3ba8a21c2052bf4d312a826c5edac 569 SMART SM00316 458 529 1.4E-21 T 11-10-2018 IPR022967 RNA-binding domain, S1 AMK58_12615 15f3ba8a21c2052bf4d312a826c5edac 569 SMART SM00316 28 96 2.0E-8 T 11-10-2018 IPR022967 RNA-binding domain, S1 AMK58_12615 15f3ba8a21c2052bf4d312a826c5edac 569 Gene3D G3DSA:2.40.50.140 278 366 2.2E-28 T 11-10-2018 AMK58_12615 15f3ba8a21c2052bf4d312a826c5edac 569 Gene3D G3DSA:2.40.50.140 367 453 3.6E-24 T 11-10-2018 AMK58_12615 15f3ba8a21c2052bf4d312a826c5edac 569 SUPERFAMILY SSF50249 264 368 3.58E-26 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_12615 15f3ba8a21c2052bf4d312a826c5edac 569 SUPERFAMILY SSF50249 442 543 1.57E-21 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_12615 15f3ba8a21c2052bf4d312a826c5edac 569 SUPERFAMILY SSF50249 17 121 1.33E-18 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_12615 15f3ba8a21c2052bf4d312a826c5edac 569 SUPERFAMILY SSF50249 351 449 1.27E-22 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_12615 15f3ba8a21c2052bf4d312a826c5edac 569 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 12 529 3.1E-204 T 11-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 AMK58_12615 15f3ba8a21c2052bf4d312a826c5edac 569 Gene3D G3DSA:2.40.50.140 16 109 2.4E-15 T 11-10-2018 AMK58_12615 15f3ba8a21c2052bf4d312a826c5edac 569 Pfam PF00575 S1 RNA binding domain 29 95 5.4E-7 T 11-10-2018 IPR003029 S1 domain GO:0003676 AMK58_12615 15f3ba8a21c2052bf4d312a826c5edac 569 Pfam PF00575 S1 RNA binding domain 370 443 1.7E-20 T 11-10-2018 IPR003029 S1 domain GO:0003676 AMK58_12615 15f3ba8a21c2052bf4d312a826c5edac 569 Pfam PF00575 S1 RNA binding domain 114 180 1.4E-8 T 11-10-2018 IPR003029 S1 domain GO:0003676 AMK58_12615 15f3ba8a21c2052bf4d312a826c5edac 569 Pfam PF00575 S1 RNA binding domain 287 356 7.3E-20 T 11-10-2018 IPR003029 S1 domain GO:0003676 AMK58_12615 15f3ba8a21c2052bf4d312a826c5edac 569 Pfam PF00575 S1 RNA binding domain 458 529 3.7E-18 T 11-10-2018 IPR003029 S1 domain GO:0003676 AMK58_12615 15f3ba8a21c2052bf4d312a826c5edac 569 Pfam PF00575 S1 RNA binding domain 199 269 4.7E-20 T 11-10-2018 IPR003029 S1 domain GO:0003676 AMK58_29140 a31621f2e94dfe4cc7e910e85f334777 441 Gene3D G3DSA:3.40.50.720 1 199 5.0E-84 T 11-10-2018 AMK58_29140 a31621f2e94dfe4cc7e910e85f334777 441 PIRSF PIRSF500134 1 436 5.4E-188 T 11-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 AMK58_29140 a31621f2e94dfe4cc7e910e85f334777 441 SUPERFAMILY SSF52413 303 428 1.7E-38 T 11-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 AMK58_29140 a31621f2e94dfe4cc7e910e85f334777 441 SMART SM00984 317 418 8.9E-48 T 11-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AMK58_29140 a31621f2e94dfe4cc7e910e85f334777 441 SUPERFAMILY SSF48179 201 298 7.48E-34 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMK58_29140 a31621f2e94dfe4cc7e910e85f334777 441 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 201 293 3.2E-38 T 11-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AMK58_29140 a31621f2e94dfe4cc7e910e85f334777 441 PIRSF PIRSF000124 1 433 4.7E-144 T 11-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 AMK58_29140 a31621f2e94dfe4cc7e910e85f334777 441 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 184 1.4E-68 T 11-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AMK58_29140 a31621f2e94dfe4cc7e910e85f334777 441 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 318 418 2.2E-30 T 11-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AMK58_29140 a31621f2e94dfe4cc7e910e85f334777 441 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 414 9.5E-145 T 11-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 AMK58_29140 a31621f2e94dfe4cc7e910e85f334777 441 SUPERFAMILY SSF51735 1 188 1.79E-56 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_29140 a31621f2e94dfe4cc7e910e85f334777 441 Gene3D G3DSA:3.40.50.720 232 441 3.5E-78 T 11-10-2018 AMK58_29140 a31621f2e94dfe4cc7e910e85f334777 441 Gene3D G3DSA:1.20.5.100 201 231 9.3E-17 T 11-10-2018 AMK58_21275 9c75f790d252beb6c9eb07b50b68521f 540 Pfam PF02910 Fumarate reductase flavoprotein C-term 429 512 1.6E-9 T 11-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMK58_21275 9c75f790d252beb6c9eb07b50b68521f 540 SUPERFAMILY SSF51905 3 395 1.86E-58 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_21275 9c75f790d252beb6c9eb07b50b68521f 540 Gene3D G3DSA:1.20.58.100 411 509 9.4E-17 T 11-10-2018 AMK58_21275 9c75f790d252beb6c9eb07b50b68521f 540 Gene3D G3DSA:3.50.50.60 12 390 1.2E-130 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_21275 9c75f790d252beb6c9eb07b50b68521f 540 Gene3D G3DSA:3.90.700.10 237 344 1.2E-130 T 11-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMK58_21275 9c75f790d252beb6c9eb07b50b68521f 540 SUPERFAMILY SSF56425 227 338 2.39E-31 T 11-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMK58_21275 9c75f790d252beb6c9eb07b50b68521f 540 Pfam PF00890 FAD binding domain 12 378 6.0E-76 T 11-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMK58_21275 9c75f790d252beb6c9eb07b50b68521f 540 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 341 363 2.0E-9 T 11-10-2018 AMK58_21275 9c75f790d252beb6c9eb07b50b68521f 540 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 12 31 2.0E-9 T 11-10-2018 AMK58_21275 9c75f790d252beb6c9eb07b50b68521f 540 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 10 508 3.8E-148 T 11-10-2018 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342 AMK58_21275 9c75f790d252beb6c9eb07b50b68521f 540 SUPERFAMILY SSF46977 428 519 3.14E-20 T 11-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMK58_06410 44d297556933f40b1e8a6c28bb824e91 68 Gene3D G3DSA:3.30.70.100 4 62 4.5E-20 T 11-10-2018 AMK58_06410 44d297556933f40b1e8a6c28bb824e91 68 SUPERFAMILY SSF55008 4 62 1.31E-15 T 11-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 AMK58_06410 44d297556933f40b1e8a6c28bb824e91 68 ProSitePatterns PS01047 Heavy-metal-associated domain. 7 36 - T 11-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 AMK58_06410 44d297556933f40b1e8a6c28bb824e91 68 Pfam PF00403 Heavy-metal-associated domain 4 62 1.3E-13 T 11-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AMK58_20770 51553c2e5a931915a1ce1d6747d50052 266 SMART SM00382 27 214 5.1E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_20770 51553c2e5a931915a1ce1d6747d50052 266 SUPERFAMILY SSF52540 3 230 1.41E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_20770 51553c2e5a931915a1ce1d6747d50052 266 Pfam PF00005 ABC transporter 18 167 3.1E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_20770 51553c2e5a931915a1ce1d6747d50052 266 Gene3D G3DSA:3.40.50.300 1 245 1.2E-66 T 11-10-2018 AMK58_20770 51553c2e5a931915a1ce1d6747d50052 266 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_28245 b62f527b565a2c166ec6a71f73836f1a 473 Gene3D G3DSA:3.90.226.10 217 390 3.6E-78 T 11-10-2018 AMK58_28245 b62f527b565a2c166ec6a71f73836f1a 473 SUPERFAMILY SSF50156 124 219 2.4E-18 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 AMK58_28245 b62f527b565a2c166ec6a71f73836f1a 473 SMART SM00245 202 393 2.3E-52 T 11-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 AMK58_28245 b62f527b565a2c166ec6a71f73836f1a 473 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 83 393 4.3E-74 T 11-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 AMK58_28245 b62f527b565a2c166ec6a71f73836f1a 473 Gene3D G3DSA:2.30.42.10 127 216 3.6E-78 T 11-10-2018 AMK58_28245 b62f527b565a2c166ec6a71f73836f1a 473 Gene3D G3DSA:3.30.750.44 76 368 3.6E-78 T 11-10-2018 AMK58_28245 b62f527b565a2c166ec6a71f73836f1a 473 Pfam PF13180 PDZ domain 127 208 8.4E-10 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMK58_28245 b62f527b565a2c166ec6a71f73836f1a 473 Pfam PF03572 Peptidase family S41 227 392 9.2E-44 T 11-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 AMK58_28245 b62f527b565a2c166ec6a71f73836f1a 473 SMART SM00228 127 200 6.1E-11 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMK58_28245 b62f527b565a2c166ec6a71f73836f1a 473 SUPERFAMILY SSF52096 68 394 8.12E-58 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMK58_20935 7afc619f2f05cb0c0e3d08d30bde46b5 100 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 68 21.412 T 11-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_20935 7afc619f2f05cb0c0e3d08d30bde46b5 100 Pfam PF00830 Ribosomal L28 family 3 61 4.4E-26 T 11-10-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_20935 7afc619f2f05cb0c0e3d08d30bde46b5 100 Gene3D G3DSA:2.30.170.40 2 78 3.3E-29 T 11-10-2018 IPR037147 Ribosomal protein L28/L24 superfamily GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_20935 7afc619f2f05cb0c0e3d08d30bde46b5 100 SUPERFAMILY SSF143800 1 85 4.71E-29 T 11-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_20935 7afc619f2f05cb0c0e3d08d30bde46b5 100 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 58 2.9E-25 T 11-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_27945 c33d8e031162e5772319e6d944d6d98d 277 SUPERFAMILY SSF53098 112 271 1.77E-54 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMK58_27945 c33d8e031162e5772319e6d944d6d98d 277 Pfam PF00665 Integrase core domain 113 224 5.9E-24 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMK58_27945 c33d8e031162e5772319e6d944d6d98d 277 Gene3D G3DSA:3.30.420.10 100 273 2.0E-18 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMK58_27945 c33d8e031162e5772319e6d944d6d98d 277 Pfam PF13276 HTH-like domain 35 90 1.4E-15 T 11-10-2018 IPR025948 HTH-like domain AMK58_25610 8c5b8b85e09c6fc04297023c2953f68b 512 PIRSF PIRSF039117 13 509 9.1E-119 T 11-10-2018 IPR030665 Circadian clock protein kinase KaiC KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 AMK58_25610 8c5b8b85e09c6fc04297023c2953f68b 512 PRINTS PR01874 DNA repair protein radA signature 273 301 1.1E-11 T 11-10-2018 AMK58_25610 8c5b8b85e09c6fc04297023c2953f68b 512 PRINTS PR01874 DNA repair protein radA signature 414 442 1.1E-11 T 11-10-2018 AMK58_25610 8c5b8b85e09c6fc04297023c2953f68b 512 PRINTS PR01874 DNA repair protein radA signature 315 332 1.1E-11 T 11-10-2018 AMK58_25610 8c5b8b85e09c6fc04297023c2953f68b 512 Pfam PF06745 KaiC 266 483 1.3E-26 T 11-10-2018 IPR014774 KaiC-like domain AMK58_25610 8c5b8b85e09c6fc04297023c2953f68b 512 Pfam PF06745 KaiC 27 249 1.9E-40 T 11-10-2018 IPR014774 KaiC-like domain AMK58_25610 8c5b8b85e09c6fc04297023c2953f68b 512 SUPERFAMILY SSF52540 262 495 2.23E-38 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_25610 8c5b8b85e09c6fc04297023c2953f68b 512 SMART SM00382 42 193 0.34 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_25610 8c5b8b85e09c6fc04297023c2953f68b 512 SMART SM00382 281 445 2.4E-4 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_25610 8c5b8b85e09c6fc04297023c2953f68b 512 Gene3D G3DSA:3.40.50.300 255 499 3.9E-49 T 11-10-2018 AMK58_25610 8c5b8b85e09c6fc04297023c2953f68b 512 SUPERFAMILY SSF52540 21 255 3.27E-38 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_25610 8c5b8b85e09c6fc04297023c2953f68b 512 Gene3D G3DSA:3.40.50.300 15 254 9.0E-52 T 11-10-2018 AMK58_21350 e30d24d3105619e17ec82b390476785f 183 Gene3D G3DSA:3.30.1380.10 72 183 3.3E-14 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AMK58_21350 e30d24d3105619e17ec82b390476785f 183 Pfam PF05951 Bacterial protein of unknown function (DUF882) 39 180 4.7E-35 T 11-10-2018 IPR010275 Protein of unknown function DUF882 AMK58_21350 e30d24d3105619e17ec82b390476785f 183 SUPERFAMILY SSF55166 70 180 4.71E-27 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AMK58_16060 6ef4888c52509b930642cca09668e785 508 Gene3D G3DSA:2.30.42.10 160 246 7.5E-73 T 11-10-2018 AMK58_16060 6ef4888c52509b930642cca09668e785 508 Gene3D G3DSA:3.90.226.10 247 419 7.5E-73 T 11-10-2018 AMK58_16060 6ef4888c52509b930642cca09668e785 508 Gene3D G3DSA:3.30.750.44 121 398 7.5E-73 T 11-10-2018 AMK58_16060 6ef4888c52509b930642cca09668e785 508 SUPERFAMILY SSF52096 116 424 6.96E-56 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMK58_16060 6ef4888c52509b930642cca09668e785 508 Pfam PF13180 PDZ domain 160 232 4.8E-9 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMK58_16060 6ef4888c52509b930642cca09668e785 508 SMART SM00228 160 231 1.8E-13 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMK58_16060 6ef4888c52509b930642cca09668e785 508 SUPERFAMILY SSF50156 154 237 3.06E-17 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 AMK58_16060 6ef4888c52509b930642cca09668e785 508 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 119 423 1.2E-69 T 11-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 AMK58_16060 6ef4888c52509b930642cca09668e785 508 SMART SM00245 232 423 5.9E-46 T 11-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 AMK58_16060 6ef4888c52509b930642cca09668e785 508 Pfam PF03572 Peptidase family S41 257 420 2.2E-43 T 11-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 AMK58_19115 f1b873bcd71b6380f7cc48c41b683be6 178 Pfam PF01799 [2Fe-2S] binding domain 91 163 5.2E-32 T 11-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMK58_19115 f1b873bcd71b6380f7cc48c41b683be6 178 SUPERFAMILY SSF47741 102 170 3.53E-31 T 11-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily AMK58_19115 f1b873bcd71b6380f7cc48c41b683be6 178 Gene3D G3DSA:3.10.20.30 10 92 1.1E-31 T 11-10-2018 IPR012675 Beta-grasp domain superfamily AMK58_19115 f1b873bcd71b6380f7cc48c41b683be6 178 SUPERFAMILY SSF54292 17 105 1.1E-26 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMK58_19115 f1b873bcd71b6380f7cc48c41b683be6 178 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 24 76 1.2E-7 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMK58_19115 f1b873bcd71b6380f7cc48c41b683be6 178 Gene3D G3DSA:1.10.150.120 93 177 1.9E-33 T 11-10-2018 AMK58_19115 f1b873bcd71b6380f7cc48c41b683be6 178 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 57 65 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AMK58_04570 eb8c9631c959870a6d587980de538cd1 294 SUPERFAMILY SSF51161 4 186 1.66E-57 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily AMK58_04570 eb8c9631c959870a6d587980de538cd1 294 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 22 182 1.6E-73 T 11-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 AMK58_04570 eb8c9631c959870a6d587980de538cd1 294 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 88 124 9.6E-5 T 11-10-2018 IPR001451 Hexapeptide repeat AMK58_04570 eb8c9631c959870a6d587980de538cd1 294 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 133 168 2.1E-7 T 11-10-2018 IPR001451 Hexapeptide repeat AMK58_04570 eb8c9631c959870a6d587980de538cd1 294 Gene3D G3DSA:1.10.3130.10 4 82 6.0E-20 T 11-10-2018 AMK58_04570 eb8c9631c959870a6d587980de538cd1 294 Gene3D G3DSA:2.160.10.10 83 201 1.1E-39 T 11-10-2018 AMK58_09970 afe86c1e6c6d18a10c8c0288f0a63b5d 563 Gene3D G3DSA:1.10.8.500 215 264 1.8E-14 T 11-10-2018 AMK58_09970 afe86c1e6c6d18a10c8c0288f0a63b5d 563 Gene3D G3DSA:1.10.287.950 271 558 2.3E-52 T 11-10-2018 AMK58_09970 afe86c1e6c6d18a10c8c0288f0a63b5d 563 SMART SM00304 214 267 1.5E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_09970 afe86c1e6c6d18a10c8c0288f0a63b5d 563 SMART SM00283 303 557 1.4E-49 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_09970 afe86c1e6c6d18a10c8c0288f0a63b5d 563 Pfam PF00672 HAMP domain 216 263 4.5E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_09970 afe86c1e6c6d18a10c8c0288f0a63b5d 563 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 367 527 6.3E-30 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_09970 afe86c1e6c6d18a10c8c0288f0a63b5d 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 478 507 5.4E-24 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_09970 afe86c1e6c6d18a10c8c0288f0a63b5d 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 8 33 5.4E-24 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_09970 afe86c1e6c6d18a10c8c0288f0a63b5d 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 430 459 5.4E-24 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_09970 afe86c1e6c6d18a10c8c0288f0a63b5d 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 401 428 5.4E-24 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_09970 afe86c1e6c6d18a10c8c0288f0a63b5d 563 Pfam PF12729 Four helix bundle sensory module for signal transduction 8 181 1.2E-8 T 11-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain AMK58_09970 afe86c1e6c6d18a10c8c0288f0a63b5d 563 SUPERFAMILY SSF58104 243 556 4.19E-62 T 11-10-2018 AMK58_11700 e31e5edf9c64ff69816809991954fff6 126 Pfam PF02410 Ribosomal silencing factor during starvation 20 112 1.6E-27 T 11-10-2018 AMK58_11700 e31e5edf9c64ff69816809991954fff6 126 Gene3D G3DSA:3.30.460.10 10 124 6.6E-38 T 11-10-2018 AMK58_11700 e31e5edf9c64ff69816809991954fff6 126 SUPERFAMILY SSF81301 12 114 3.27E-35 T 11-10-2018 AMK58_11700 e31e5edf9c64ff69816809991954fff6 126 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 8 113 24.514 T 11-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS AMK58_11700 e31e5edf9c64ff69816809991954fff6 126 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 16 112 5.0E-34 T 11-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS AMK58_08985 54d4f4eeb575a85250a5f28435952bb2 389 Pfam PF10098 Uncharacterised protein conserved in bacteria (DUF2336) 91 351 2.7E-59 T 11-10-2018 IPR019285 Protein of unknown function DUF2336 AMK58_03075 606c6f3146baff28ed9538cc769d50ca 397 Pfam PF03929 PepSY-associated TM region 12 359 7.5E-57 T 11-10-2018 IPR005625 PepSY-associated TM protein AMK58_14890 222be9a08f3ec6bef74b3224d794237a 443 SUPERFAMILY SSF52317 250 441 1.1E-31 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_14890 222be9a08f3ec6bef74b3224d794237a 443 SUPERFAMILY SSF52540 8 203 9.61E-41 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_14890 222be9a08f3ec6bef74b3224d794237a 443 Gene3D G3DSA:3.40.50.300 7 194 1.3E-22 T 11-10-2018 AMK58_14890 222be9a08f3ec6bef74b3224d794237a 443 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 251 441 7.8E-34 T 11-10-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 AMK58_14890 222be9a08f3ec6bef74b3224d794237a 443 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 11 195 1.7E-15 T 11-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain AMK58_14890 222be9a08f3ec6bef74b3224d794237a 443 Gene3D G3DSA:3.40.50.880 259 441 1.0E-10 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_14890 222be9a08f3ec6bef74b3224d794237a 443 TIGRFAM TIGR00379 cobB: cobyrinic acid a,c-diamide synthase 11 439 5.0E-99 T 11-10-2018 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 AMK58_14890 222be9a08f3ec6bef74b3224d794237a 443 Hamap MF_00027 Hydrogenobyrinate a,c-diamide synthase [cobB]. 6 443 41.857 T 11-10-2018 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 AMK58_26885 cecc765ab6021c833e50ff9699cb4a17 687 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 3 129 1.4E-22 T 11-10-2018 IPR000014 PAS domain AMK58_26885 cecc765ab6021c833e50ff9699cb4a17 687 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 133 250 2.0E-14 T 11-10-2018 IPR000014 PAS domain AMK58_26885 cecc765ab6021c833e50ff9699cb4a17 687 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 254 411 2.0E-37 T 11-10-2018 IPR000160 GGDEF domain AMK58_26885 cecc765ab6021c833e50ff9699cb4a17 687 SMART SM00052 427 677 1.7E-114 T 11-10-2018 IPR001633 EAL domain AMK58_26885 cecc765ab6021c833e50ff9699cb4a17 687 Pfam PF00563 EAL domain 434 672 1.1E-68 T 11-10-2018 IPR001633 EAL domain AMK58_26885 cecc765ab6021c833e50ff9699cb4a17 687 SUPERFAMILY SSF55073 261 418 8.63E-49 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_26885 cecc765ab6021c833e50ff9699cb4a17 687 Pfam PF13426 PAS domain 18 122 1.5E-9 T 11-10-2018 IPR000014 PAS domain AMK58_26885 cecc765ab6021c833e50ff9699cb4a17 687 Gene3D G3DSA:3.30.70.270 254 428 2.0E-58 T 11-10-2018 AMK58_26885 cecc765ab6021c833e50ff9699cb4a17 687 SMART SM00091 131 197 2.6E-7 T 11-10-2018 IPR000014 PAS domain AMK58_26885 cecc765ab6021c833e50ff9699cb4a17 687 SMART SM00091 7 74 1.2E-4 T 11-10-2018 IPR000014 PAS domain AMK58_26885 cecc765ab6021c833e50ff9699cb4a17 687 Gene3D G3DSA:3.20.20.450 429 686 8.4E-100 T 11-10-2018 IPR035919 EAL domain superfamily AMK58_26885 cecc765ab6021c833e50ff9699cb4a17 687 Gene3D G3DSA:3.30.450.20 4 132 2.8E-25 T 11-10-2018 AMK58_26885 cecc765ab6021c833e50ff9699cb4a17 687 Gene3D G3DSA:3.30.450.20 133 253 7.4E-25 T 11-10-2018 AMK58_26885 cecc765ab6021c833e50ff9699cb4a17 687 Pfam PF00990 Diguanylate cyclase, GGDEF domain 256 409 1.4E-44 T 11-10-2018 IPR000160 GGDEF domain AMK58_26885 cecc765ab6021c833e50ff9699cb4a17 687 SMART SM00267 245 417 1.5E-56 T 11-10-2018 IPR000160 GGDEF domain AMK58_26885 cecc765ab6021c833e50ff9699cb4a17 687 SMART SM00086 81 123 3.7E-6 T 11-10-2018 IPR001610 PAC motif AMK58_26885 cecc765ab6021c833e50ff9699cb4a17 687 SMART SM00086 203 245 5.2 T 11-10-2018 IPR001610 PAC motif AMK58_26885 cecc765ab6021c833e50ff9699cb4a17 687 Pfam PF00989 PAS fold 133 242 7.4E-12 T 11-10-2018 IPR013767 PAS fold GO:0006355 AMK58_26885 cecc765ab6021c833e50ff9699cb4a17 687 SUPERFAMILY SSF141868 435 684 7.85E-88 T 11-10-2018 IPR035919 EAL domain superfamily AMK58_26885 cecc765ab6021c833e50ff9699cb4a17 687 SUPERFAMILY SSF55785 12 125 3.14E-21 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_26885 cecc765ab6021c833e50ff9699cb4a17 687 SUPERFAMILY SSF55785 120 243 7.15E-23 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_20165 a55f1c47a9fa9f46a898a79fd5d6704b 538 Pfam PF00501 AMP-binding enzyme 32 440 9.7E-92 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMK58_20165 a55f1c47a9fa9f46a898a79fd5d6704b 538 SUPERFAMILY SSF56801 13 536 5.1E-156 T 11-10-2018 AMK58_20165 a55f1c47a9fa9f46a898a79fd5d6704b 538 Gene3D G3DSA:3.40.50.12780 15 437 8.3E-122 T 11-10-2018 AMK58_20165 a55f1c47a9fa9f46a898a79fd5d6704b 538 Pfam PF13193 AMP-binding enzyme C-terminal domain 450 528 3.9E-23 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMK58_20165 a55f1c47a9fa9f46a898a79fd5d6704b 538 Gene3D G3DSA:3.30.300.30 438 538 8.4E-31 T 11-10-2018 AMK58_20165 a55f1c47a9fa9f46a898a79fd5d6704b 538 ProSitePatterns PS00455 Putative AMP-binding domain signature. 190 201 - T 11-10-2018 IPR020845 AMP-binding, conserved site AMK58_00860 3d404553b05eb98aa7f57693a2e11381 607 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 105 519 1.1E-75 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain AMK58_00860 3d404553b05eb98aa7f57693a2e11381 607 Gene3D G3DSA:3.40.190.10 34 602 2.7E-235 T 11-10-2018 AMK58_00860 3d404553b05eb98aa7f57693a2e11381 607 PIRSF PIRSF002741 28 605 1.4E-97 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMK58_00860 3d404553b05eb98aa7f57693a2e11381 607 SUPERFAMILY SSF53850 56 604 9.59E-120 T 11-10-2018 AMK58_00860 3d404553b05eb98aa7f57693a2e11381 607 Gene3D G3DSA:3.10.105.10 322 582 2.7E-235 T 11-10-2018 AMK58_00845 743a3e38102a7e609b7e6f321a6a1a6b 894 Gene3D G3DSA:3.30.470.20 485 696 2.8E-78 T 11-10-2018 AMK58_00845 743a3e38102a7e609b7e6f321a6a1a6b 894 Gene3D G3DSA:3.40.50.261 290 457 1.8E-49 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMK58_00845 743a3e38102a7e609b7e6f321a6a1a6b 894 Gene3D G3DSA:3.40.50.261 127 287 1.5E-58 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMK58_00845 743a3e38102a7e609b7e6f321a6a1a6b 894 SUPERFAMILY SSF55729 727 880 1.21E-19 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_00845 743a3e38102a7e609b7e6f321a6a1a6b 894 Gene3D G3DSA:3.40.630.30 721 890 3.0E-39 T 11-10-2018 AMK58_00845 743a3e38102a7e609b7e6f321a6a1a6b 894 SUPERFAMILY SSF52210 128 285 1.7E-45 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMK58_00845 743a3e38102a7e609b7e6f321a6a1a6b 894 Pfam PF00583 Acetyltransferase (GNAT) family 753 869 1.6E-9 T 11-10-2018 IPR000182 GNAT domain AMK58_00845 743a3e38102a7e609b7e6f321a6a1a6b 894 SMART SM00881 9 103 1.2E-28 T 11-10-2018 IPR003781 CoA-binding GO:0048037 AMK58_00845 743a3e38102a7e609b7e6f321a6a1a6b 894 SUPERFAMILY SSF52210 293 450 8.37E-39 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMK58_00845 743a3e38102a7e609b7e6f321a6a1a6b 894 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 148 284 1.5E-55 T 11-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain AMK58_00845 743a3e38102a7e609b7e6f321a6a1a6b 894 Gene3D G3DSA:3.40.50.720 3 126 2.7E-35 T 11-10-2018 AMK58_00845 743a3e38102a7e609b7e6f321a6a1a6b 894 SUPERFAMILY SSF51735 1 136 1.25E-30 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_00845 743a3e38102a7e609b7e6f321a6a1a6b 894 Pfam PF13549 ATP-grasp domain 477 698 3.5E-86 T 11-10-2018 AMK58_00845 743a3e38102a7e609b7e6f321a6a1a6b 894 Gene3D G3DSA:3.30.1490.20 503 580 2.8E-78 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMK58_00845 743a3e38102a7e609b7e6f321a6a1a6b 894 Pfam PF13380 CoA binding domain 14 132 5.0E-18 T 11-10-2018 IPR003781 CoA-binding GO:0048037 AMK58_00845 743a3e38102a7e609b7e6f321a6a1a6b 894 SUPERFAMILY SSF56059 485 702 2.14E-40 T 11-10-2018 AMK58_27340 44fa477a9b89c1a0924df487c4fe8653 158 Gene3D G3DSA:1.20.120.50 20 157 1.0E-18 T 11-10-2018 IPR035938 Hemerythrin-like superfamily AMK58_27340 44fa477a9b89c1a0924df487c4fe8653 158 SUPERFAMILY SSF47188 27 152 9.68E-19 T 11-10-2018 IPR035938 Hemerythrin-like superfamily AMK58_27340 44fa477a9b89c1a0924df487c4fe8653 158 Pfam PF01814 Hemerythrin HHE cation binding domain 35 140 2.1E-6 T 11-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 AMK58_27340 44fa477a9b89c1a0924df487c4fe8653 158 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 30 151 6.8E-17 T 11-10-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 AMK58_03510 cede2752fa4151fc485a98fc0caac4fb 309 Pfam PF00753 Metallo-beta-lactamase superfamily 55 233 3.4E-12 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMK58_03510 cede2752fa4151fc485a98fc0caac4fb 309 SUPERFAMILY SSF56281 8 303 4.34E-56 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMK58_03510 cede2752fa4151fc485a98fc0caac4fb 309 SMART SM00849 54 233 3.6E-11 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMK58_03510 cede2752fa4151fc485a98fc0caac4fb 309 Gene3D G3DSA:3.60.15.10 28 252 7.3E-38 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMK58_03510 cede2752fa4151fc485a98fc0caac4fb 309 TIGRFAM TIGR04558 SoxH_rel_PQQ_1: quinoprotein relay system zinc metallohydrolase 1 22 305 7.7E-130 T 11-10-2018 IPR030811 Quinoprotein relay system zinc metallohydrolase 1 AMK58_00410 073448b516f0293eef51fc8f323b4a13 284 SUPERFAMILY SSF51735 108 275 1.93E-39 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_00410 073448b516f0293eef51fc8f323b4a13 284 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 8 275 1.6E-67 T 11-10-2018 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 AMK58_00410 073448b516f0293eef51fc8f323b4a13 284 Gene3D G3DSA:3.40.50.10860 12 272 1.9E-80 T 11-10-2018 AMK58_00410 073448b516f0293eef51fc8f323b4a13 284 SUPERFAMILY SSF53223 1 107 3.51E-32 T 11-10-2018 AMK58_00410 073448b516f0293eef51fc8f323b4a13 284 Gene3D G3DSA:3.40.50.720 106 250 1.9E-80 T 11-10-2018 AMK58_00410 073448b516f0293eef51fc8f323b4a13 284 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 7 283 32.971 T 11-10-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 AMK58_00410 073448b516f0293eef51fc8f323b4a13 284 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 128 173 1.6E-7 T 11-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase AMK58_00410 073448b516f0293eef51fc8f323b4a13 284 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 12 94 3.3E-28 T 11-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 AMK58_27040 7a6073c679778085fee035e2bf4a8654 284 SUPERFAMILY SSF53448 30 261 3.23E-17 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_27040 7a6073c679778085fee035e2bf4a8654 284 Gene3D G3DSA:3.90.550.20 33 171 7.5E-7 T 11-10-2018 AMK58_27040 7a6073c679778085fee035e2bf4a8654 284 Pfam PF04488 Glycosyltransferase sugar-binding region containing DXD motif 115 148 8.3E-8 T 11-10-2018 IPR007577 Glycosyltransferase, DXD sugar-binding motif AMK58_23095 782d349f49e0e74dadc1aed145c54f4d 296 PIRSF PIRSF000103 1 296 6.4E-86 T 11-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 AMK58_23095 782d349f49e0e74dadc1aed145c54f4d 296 Gene3D G3DSA:3.40.50.720 1 163 2.8E-56 T 11-10-2018 AMK58_23095 782d349f49e0e74dadc1aed145c54f4d 296 Gene3D G3DSA:1.10.1040.10 165 295 3.9E-48 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMK58_23095 782d349f49e0e74dadc1aed145c54f4d 296 SUPERFAMILY SSF51735 3 162 8.74E-45 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_23095 782d349f49e0e74dadc1aed145c54f4d 296 TIGRFAM TIGR01692 HIBADH: 3-hydroxyisobutyrate dehydrogenase 6 293 8.2E-132 T 11-10-2018 IPR011548 3-hydroxyisobutyrate dehydrogenase GO:0008442|GO:0051287|GO:0055114 KEGG: 00280+1.1.1.31|Reactome: R-HSA-70895 AMK58_23095 782d349f49e0e74dadc1aed145c54f4d 296 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 162 2.4E-50 T 11-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 AMK58_23095 782d349f49e0e74dadc1aed145c54f4d 296 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 165 292 1.1E-40 T 11-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 AMK58_23095 782d349f49e0e74dadc1aed145c54f4d 296 SUPERFAMILY SSF48179 163 294 3.06E-43 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMK58_22705 98a1d0fe2a5631f9beaf7365228a745c 255 SUPERFAMILY SSF48008 91 229 2.12E-25 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_22705 98a1d0fe2a5631f9beaf7365228a745c 255 SMART SM00345 11 69 5.6E-14 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_22705 98a1d0fe2a5631f9beaf7365228a745c 255 Gene3D G3DSA:1.20.120.530 94 228 2.3E-30 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_22705 98a1d0fe2a5631f9beaf7365228a745c 255 Pfam PF07729 FCD domain 95 219 5.9E-25 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_22705 98a1d0fe2a5631f9beaf7365228a745c 255 Gene3D G3DSA:1.10.10.10 1 69 1.8E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_22705 98a1d0fe2a5631f9beaf7365228a745c 255 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 44 60 8.7E-7 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_22705 98a1d0fe2a5631f9beaf7365228a745c 255 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 30 44 8.7E-7 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_22705 98a1d0fe2a5631f9beaf7365228a745c 255 SMART SM00895 93 221 2.5E-19 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_22705 98a1d0fe2a5631f9beaf7365228a745c 255 Pfam PF00392 Bacterial regulatory proteins, gntR family 8 66 2.1E-14 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_22705 98a1d0fe2a5631f9beaf7365228a745c 255 SUPERFAMILY SSF46785 3 70 4.69E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_15850 ce9b24eff446ece217a60e24e6a056ee 415 SMART SM00388 175 244 7.2E-18 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_15850 ce9b24eff446ece217a60e24e6a056ee 415 Gene3D G3DSA:3.40.50.2300 10 142 1.8E-30 T 11-10-2018 AMK58_15850 ce9b24eff446ece217a60e24e6a056ee 415 SUPERFAMILY SSF47384 161 241 1.18E-17 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_15850 ce9b24eff446ece217a60e24e6a056ee 415 Pfam PF00072 Response regulator receiver domain 19 131 4.4E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_15850 ce9b24eff446ece217a60e24e6a056ee 415 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 289 398 2.3E-26 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_15850 ce9b24eff446ece217a60e24e6a056ee 415 Gene3D G3DSA:3.30.565.10 248 401 9.8E-42 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_15850 ce9b24eff446ece217a60e24e6a056ee 415 Gene3D G3DSA:1.10.287.130 143 241 7.1E-25 T 11-10-2018 AMK58_15850 ce9b24eff446ece217a60e24e6a056ee 415 SUPERFAMILY SSF55874 233 399 2.62E-43 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_15850 ce9b24eff446ece217a60e24e6a056ee 415 Pfam PF00512 His Kinase A (phospho-acceptor) domain 176 243 7.4E-15 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_15850 ce9b24eff446ece217a60e24e6a056ee 415 PRINTS PR00344 Bacterial sensor protein C-terminal signature 360 378 8.9E-18 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_15850 ce9b24eff446ece217a60e24e6a056ee 415 PRINTS PR00344 Bacterial sensor protein C-terminal signature 384 397 8.9E-18 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_15850 ce9b24eff446ece217a60e24e6a056ee 415 PRINTS PR00344 Bacterial sensor protein C-terminal signature 343 353 8.9E-18 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_15850 ce9b24eff446ece217a60e24e6a056ee 415 PRINTS PR00344 Bacterial sensor protein C-terminal signature 325 339 8.9E-18 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_15850 ce9b24eff446ece217a60e24e6a056ee 415 SUPERFAMILY SSF52172 17 170 3.98E-35 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_15850 ce9b24eff446ece217a60e24e6a056ee 415 SMART SM00448 17 131 1.1E-30 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_15850 ce9b24eff446ece217a60e24e6a056ee 415 SMART SM00387 288 400 7.2E-35 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_24470 a672d49873eb30c813a72166103f7cf0 579 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 463 571 8.9E-23 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_24470 a672d49873eb30c813a72166103f7cf0 579 Gene3D G3DSA:3.40.190.10 9 231 2.8E-15 T 11-10-2018 AMK58_24470 a672d49873eb30c813a72166103f7cf0 579 Gene3D G3DSA:3.30.565.10 419 578 6.1E-44 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_24470 a672d49873eb30c813a72166103f7cf0 579 Gene3D G3DSA:1.10.287.130 355 417 7.4E-20 T 11-10-2018 AMK58_24470 a672d49873eb30c813a72166103f7cf0 579 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 2 247 2.3E-35 T 11-10-2018 AMK58_24470 a672d49873eb30c813a72166103f7cf0 579 SUPERFAMILY SSF47384 346 419 1.0E-9 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_24470 a672d49873eb30c813a72166103f7cf0 579 SMART SM00388 350 420 3.1E-10 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_24470 a672d49873eb30c813a72166103f7cf0 579 PRINTS PR00344 Bacterial sensor protein C-terminal signature 557 570 2.8E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_24470 a672d49873eb30c813a72166103f7cf0 579 PRINTS PR00344 Bacterial sensor protein C-terminal signature 533 551 2.8E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_24470 a672d49873eb30c813a72166103f7cf0 579 PRINTS PR00344 Bacterial sensor protein C-terminal signature 522 532 2.8E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_24470 a672d49873eb30c813a72166103f7cf0 579 PRINTS PR00344 Bacterial sensor protein C-terminal signature 504 518 2.8E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_24470 a672d49873eb30c813a72166103f7cf0 579 SUPERFAMILY SSF53850 36 181 1.99E-13 T 11-10-2018 AMK58_24470 a672d49873eb30c813a72166103f7cf0 579 SMART SM00387 462 573 5.1E-33 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_24470 a672d49873eb30c813a72166103f7cf0 579 SUPERFAMILY SSF55874 409 571 3.01E-40 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_24470 a672d49873eb30c813a72166103f7cf0 579 Pfam PF00512 His Kinase A (phospho-acceptor) domain 351 419 1.5E-10 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_24470 a672d49873eb30c813a72166103f7cf0 579 Gene3D G3DSA:3.40.190.10 85 206 2.8E-15 T 11-10-2018 AMK58_02695 da5299fee52cd0800e5a3923ace4c52c 282 Pfam PF01063 Amino-transferase class IV 37 258 5.8E-40 T 11-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 AMK58_02695 da5299fee52cd0800e5a3923ace4c52c 282 ProSitePatterns PS00770 Aminotransferases class-IV signature. 184 213 - T 11-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 AMK58_02695 da5299fee52cd0800e5a3923ace4c52c 282 Gene3D G3DSA:3.20.10.10 132 280 2.6E-41 T 11-10-2018 AMK58_02695 da5299fee52cd0800e5a3923ace4c52c 282 SUPERFAMILY SSF56752 10 280 6.54E-71 T 11-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 AMK58_02695 da5299fee52cd0800e5a3923ace4c52c 282 Gene3D G3DSA:3.30.470.10 2 128 1.0E-31 T 11-10-2018 AMK58_22530 c8b4fa1b7410da0aebac428b0f52c59c 359 SUPERFAMILY SSF50331 241 354 9.96E-14 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMK58_22530 c8b4fa1b7410da0aebac428b0f52c59c 359 SMART SM00382 28 223 1.8E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_22530 c8b4fa1b7410da0aebac428b0f52c59c 359 Pfam PF00005 ABC transporter 19 165 5.4E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_22530 c8b4fa1b7410da0aebac428b0f52c59c 359 Gene3D G3DSA:3.40.50.300 3 225 7.2E-65 T 11-10-2018 AMK58_22530 c8b4fa1b7410da0aebac428b0f52c59c 359 SUPERFAMILY SSF52540 4 243 4.8E-82 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_22530 c8b4fa1b7410da0aebac428b0f52c59c 359 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_22530 c8b4fa1b7410da0aebac428b0f52c59c 359 Gene3D G3DSA:2.40.50.940 226 349 5.3E-7 T 11-10-2018 AMK58_22530 c8b4fa1b7410da0aebac428b0f52c59c 359 Pfam PF08402 TOBE domain 277 355 1.9E-12 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMK58_22530 c8b4fa1b7410da0aebac428b0f52c59c 359 Gene3D G3DSA:2.40.50.140 284 347 5.3E-7 T 11-10-2018 AMK58_26535 70e0ad7fa198f1f2f326aed6901bcb0c 344 Pfam PF03812 2-keto-3-deoxygluconate permease 3 312 3.1E-114 T 11-10-2018 IPR004684 2-keto-3-deoxygluconate permease GO:0008643|GO:0015649|GO:0016021|GO:0046411 AMK58_26535 70e0ad7fa198f1f2f326aed6901bcb0c 344 ProDom PD024513 PERMEASE 2-KETO-3-DEOXYGLUCONATE MEMBRANE TRANSMEMBRANE SUGAR KDG SYMPORT INNER 2-KETO-3-DEOXY-D-GLUCONATE SYSTEM 14 245 2.0E-60 T 11-10-2018 IPR004684 2-keto-3-deoxygluconate permease GO:0008643|GO:0015649|GO:0016021|GO:0046411 AMK58_26535 70e0ad7fa198f1f2f326aed6901bcb0c 344 TIGRFAM TIGR00793 kdgT: 2-keto-3-deoxygluconate transporter 1 312 6.8E-144 T 11-10-2018 IPR018395 2-keto-3-deoxygluconate permease, subgroup GO:0008643|GO:0015649|GO:0016021|GO:0046411 AMK58_26535 70e0ad7fa198f1f2f326aed6901bcb0c 344 Hamap MF_00070 2-keto-3-deoxygluconate permease [kdgT]. 1 318 33.457 T 11-10-2018 IPR004684 2-keto-3-deoxygluconate permease GO:0008643|GO:0015649|GO:0016021|GO:0046411 AMK58_02645 218592e4326c4a40965a84efc8efcf8a 134 Gene3D G3DSA:1.10.3680.10 3 118 4.6E-16 T 11-10-2018 IPR029024 TerB-like AMK58_02645 218592e4326c4a40965a84efc8efcf8a 134 Pfam PF05099 Tellurite resistance protein TerB 5 118 6.0E-7 T 11-10-2018 IPR007791 Co-chaperone DjlA, N-terminal AMK58_02645 218592e4326c4a40965a84efc8efcf8a 134 SUPERFAMILY SSF158682 5 120 3.4E-13 T 11-10-2018 IPR029024 TerB-like AMK58_07500 03467a2832711a6e039df3f221be682d 372 PIRSF PIRSF000183 1 371 4.7E-156 T 11-10-2018 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 AMK58_07500 03467a2832711a6e039df3f221be682d 372 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 141 352 8.9E-84 T 11-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain AMK58_07500 03467a2832711a6e039df3f221be682d 372 SUPERFAMILY SSF52283 1 360 7.23E-66 T 11-10-2018 AMK58_07500 03467a2832711a6e039df3f221be682d 372 Gene3D G3DSA:3.40.50.720 130 305 1.4E-137 T 11-10-2018 AMK58_07500 03467a2832711a6e039df3f221be682d 372 Gene3D G3DSA:3.40.50.720 3 353 1.4E-137 T 11-10-2018 AMK58_07500 03467a2832711a6e039df3f221be682d 372 SMART SM01002 149 297 3.5E-89 T 11-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain AMK58_07500 03467a2832711a6e039df3f221be682d 372 SMART SM01003 4 137 1.3E-76 T 11-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal AMK58_07500 03467a2832711a6e039df3f221be682d 372 TIGRFAM TIGR00518 alaDH: alanine dehydrogenase 1 370 9.1E-157 T 11-10-2018 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 AMK58_07500 03467a2832711a6e039df3f221be682d 372 SUPERFAMILY SSF51735 137 303 4.3E-49 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_07500 03467a2832711a6e039df3f221be682d 372 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 137 1.8E-46 T 11-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal AMK58_07770 ec613197404ba038602f5a827c0faeb3 388 SUPERFAMILY SSF69189 279 371 1.0E-20 T 11-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMK58_07770 ec613197404ba038602f5a827c0faeb3 388 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 119 136 2.3E-15 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMK58_07770 ec613197404ba038602f5a827c0faeb3 388 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 146 159 2.3E-15 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMK58_07770 ec613197404ba038602f5a827c0faeb3 388 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 66 77 2.3E-15 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMK58_07770 ec613197404ba038602f5a827c0faeb3 388 Gene3D G3DSA:3.40.710.10 29 278 2.6E-80 T 11-10-2018 AMK58_07770 ec613197404ba038602f5a827c0faeb3 388 Gene3D G3DSA:2.60.410.10 279 369 4.6E-21 T 11-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMK58_07770 ec613197404ba038602f5a827c0faeb3 388 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 279 369 8.1E-17 T 11-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMK58_07770 ec613197404ba038602f5a827c0faeb3 388 SMART SM00936 279 369 3.8E-27 T 11-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMK58_07770 ec613197404ba038602f5a827c0faeb3 388 SUPERFAMILY SSF56601 12 279 5.91E-76 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMK58_07770 ec613197404ba038602f5a827c0faeb3 388 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 33 255 2.8E-71 T 11-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 AMK58_08205 16d944b07f9db2912dd55fc624192d4a 562 SUPERFAMILY SSF56014 419 558 1.09E-38 T 11-10-2018 AMK58_08205 16d944b07f9db2912dd55fc624192d4a 562 SUPERFAMILY SSF55124 11 137 9.98E-32 T 11-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMK58_08205 16d944b07f9db2912dd55fc624192d4a 562 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 130 283 1.5E-41 T 11-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMK58_08205 16d944b07f9db2912dd55fc624192d4a 562 Gene3D G3DSA:3.30.413.10 130 323 8.2E-79 T 11-10-2018 AMK58_08205 16d944b07f9db2912dd55fc624192d4a 562 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 426 558 2.3E-14 T 11-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMK58_08205 16d944b07f9db2912dd55fc624192d4a 562 SUPERFAMILY SSF55124 263 432 4.42E-25 T 11-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMK58_08205 16d944b07f9db2912dd55fc624192d4a 562 Gene3D G3DSA:3.30.413.10 419 562 2.4E-32 T 11-10-2018 AMK58_08205 16d944b07f9db2912dd55fc624192d4a 562 SUPERFAMILY SSF56014 131 285 1.44E-45 T 11-10-2018 AMK58_08205 16d944b07f9db2912dd55fc624192d4a 562 Gene3D G3DSA:3.90.480.10 63 400 8.2E-79 T 11-10-2018 AMK58_08205 16d944b07f9db2912dd55fc624192d4a 562 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 63 122 2.1E-19 T 11-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMK58_08205 16d944b07f9db2912dd55fc624192d4a 562 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 345 409 8.6E-13 T 11-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMK58_07285 df4074363e4af202f5fe1e71debb80f6 487 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 370 477 2.8E-19 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_07285 df4074363e4af202f5fe1e71debb80f6 487 PRINTS PR00344 Bacterial sensor protein C-terminal signature 439 457 2.2E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_07285 df4074363e4af202f5fe1e71debb80f6 487 PRINTS PR00344 Bacterial sensor protein C-terminal signature 404 418 2.2E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_07285 df4074363e4af202f5fe1e71debb80f6 487 PRINTS PR00344 Bacterial sensor protein C-terminal signature 463 476 2.2E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_07285 df4074363e4af202f5fe1e71debb80f6 487 PRINTS PR00344 Bacterial sensor protein C-terminal signature 422 432 2.2E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_07285 df4074363e4af202f5fe1e71debb80f6 487 Pfam PF00512 His Kinase A (phospho-acceptor) domain 259 324 1.7E-10 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_07285 df4074363e4af202f5fe1e71debb80f6 487 SUPERFAMILY SSF55874 313 477 3.27E-38 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_07285 df4074363e4af202f5fe1e71debb80f6 487 SUPERFAMILY SSF47384 245 324 3.73E-13 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_07285 df4074363e4af202f5fe1e71debb80f6 487 SMART SM00388 259 324 1.6E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_07285 df4074363e4af202f5fe1e71debb80f6 487 Gene3D G3DSA:3.30.565.10 331 482 4.4E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_07285 df4074363e4af202f5fe1e71debb80f6 487 SMART SM00387 368 479 2.6E-25 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_07285 df4074363e4af202f5fe1e71debb80f6 487 Gene3D G3DSA:1.10.287.130 219 322 2.2E-16 T 11-10-2018 AMK58_07285 df4074363e4af202f5fe1e71debb80f6 487 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 44 104 9.0E-9 T 11-10-2018 IPR029095 NarX-like, N-terminal AMK58_07345 18f4048b1d1af46502baa00dc7c192c0 258 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 21 255 4.5E-76 T 11-10-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria AMK58_07345 18f4048b1d1af46502baa00dc7c192c0 258 Pfam PF02405 Permease MlaE 42 251 9.1E-81 T 11-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 AMK58_09660 517e4f644c7254ae4cb6d1dc0ab459ef 358 SUPERFAMILY SSF103263 4 354 5.36E-146 T 11-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AMK58_09660 517e4f644c7254ae4cb6d1dc0ab459ef 358 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 11-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AMK58_09660 517e4f644c7254ae4cb6d1dc0ab459ef 358 ProSitePatterns PS00789 Chorismate synthase signature 3. 324 340 - T 11-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AMK58_09660 517e4f644c7254ae4cb6d1dc0ab459ef 358 Hamap MF_00300 Chorismate synthase [aroC]. 10 357 37.422 T 11-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AMK58_09660 517e4f644c7254ae4cb6d1dc0ab459ef 358 TIGRFAM TIGR00033 aroC: chorismate synthase 10 354 1.9E-138 T 11-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AMK58_09660 517e4f644c7254ae4cb6d1dc0ab459ef 358 PIRSF PIRSF001456 3 357 2.2E-140 T 11-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AMK58_09660 517e4f644c7254ae4cb6d1dc0ab459ef 358 Gene3D G3DSA:3.60.150.10 1 357 1.0E-149 T 11-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AMK58_09660 517e4f644c7254ae4cb6d1dc0ab459ef 358 Pfam PF01264 Chorismate synthase 10 350 6.3E-140 T 11-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AMK58_09660 517e4f644c7254ae4cb6d1dc0ab459ef 358 ProSitePatterns PS00788 Chorismate synthase signature 2. 124 140 - T 11-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AMK58_28220 24e0362b6c9c1b6654608af9abe71f7f 836 Pfam PF00391 PEP-utilising enzyme, mobile domain 423 494 1.9E-15 T 11-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AMK58_28220 24e0362b6c9c1b6654608af9abe71f7f 836 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 160 235 1.2E-16 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like AMK58_28220 24e0362b6c9c1b6654608af9abe71f7f 836 SUPERFAMILY SSF52009 393 510 3.01E-22 T 11-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 AMK58_28220 24e0362b6c9c1b6654608af9abe71f7f 836 Gene3D G3DSA:3.20.20.60 503 834 4.8E-110 T 11-10-2018 AMK58_28220 24e0362b6c9c1b6654608af9abe71f7f 836 Pfam PF00381 PTS HPr component phosphorylation site 158 236 8.8E-18 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like AMK58_28220 24e0362b6c9c1b6654608af9abe71f7f 836 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 1 114 6.2E-37 T 11-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 AMK58_28220 24e0362b6c9c1b6654608af9abe71f7f 836 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 193 208 - T 11-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site AMK58_28220 24e0362b6c9c1b6654608af9abe71f7f 836 Gene3D G3DSA:1.10.274.10 298 414 1.6E-50 T 11-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 AMK58_28220 24e0362b6c9c1b6654608af9abe71f7f 836 Gene3D G3DSA:2.70.70.10 1 137 2.5E-39 T 11-10-2018 IPR011055 Duplicated hybrid motif AMK58_28220 24e0362b6c9c1b6654608af9abe71f7f 836 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 167 174 - T 11-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site AMK58_28220 24e0362b6c9c1b6654608af9abe71f7f 836 PRINTS PR00107 Phosphocarrier protein signature 207 224 2.2E-12 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like AMK58_28220 24e0362b6c9c1b6654608af9abe71f7f 836 PRINTS PR00107 Phosphocarrier protein signature 192 207 2.2E-12 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like AMK58_28220 24e0362b6c9c1b6654608af9abe71f7f 836 PRINTS PR00107 Phosphocarrier protein signature 167 183 2.2E-12 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like AMK58_28220 24e0362b6c9c1b6654608af9abe71f7f 836 SUPERFAMILY SSF55594 158 241 3.4E-19 T 11-10-2018 IPR035895 HPr-like superfamily AMK58_28220 24e0362b6c9c1b6654608af9abe71f7f 836 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 279 829 1.5E-132 T 11-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 AMK58_28220 24e0362b6c9c1b6654608af9abe71f7f 836 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 2 112 1.1E-34 T 11-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 AMK58_28220 24e0362b6c9c1b6654608af9abe71f7f 836 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 520 804 4.1E-97 T 11-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 AMK58_28220 24e0362b6c9c1b6654608af9abe71f7f 836 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 764 776 2.8E-21 T 11-10-2018 AMK58_28220 24e0362b6c9c1b6654608af9abe71f7f 836 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 711 726 2.8E-21 T 11-10-2018 AMK58_28220 24e0362b6c9c1b6654608af9abe71f7f 836 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 562 581 2.8E-21 T 11-10-2018 AMK58_28220 24e0362b6c9c1b6654608af9abe71f7f 836 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 728 743 2.8E-21 T 11-10-2018 AMK58_28220 24e0362b6c9c1b6654608af9abe71f7f 836 Gene3D G3DSA:3.30.1340.10 156 241 2.8E-20 T 11-10-2018 IPR035895 HPr-like superfamily AMK58_28220 24e0362b6c9c1b6654608af9abe71f7f 836 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 711 729 - T 11-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 AMK58_28220 24e0362b6c9c1b6654608af9abe71f7f 836 SUPERFAMILY SSF51621 525 813 2.41E-95 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMK58_28220 24e0362b6c9c1b6654608af9abe71f7f 836 Pfam PF05524 PEP-utilising enzyme, N-terminal 280 394 1.1E-19 T 11-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 AMK58_28220 24e0362b6c9c1b6654608af9abe71f7f 836 SUPERFAMILY SSF47831 309 411 3.27E-21 T 11-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 AMK58_28220 24e0362b6c9c1b6654608af9abe71f7f 836 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 54 66 - T 11-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 AMK58_28220 24e0362b6c9c1b6654608af9abe71f7f 836 SUPERFAMILY SSF51261 1 135 4.19E-40 T 11-10-2018 IPR011055 Duplicated hybrid motif AMK58_28220 24e0362b6c9c1b6654608af9abe71f7f 836 Gene3D G3DSA:3.50.30.10 281 502 1.6E-50 T 11-10-2018 AMK58_13700 b13be6ff0068a8a974e11ea503e3b69d 244 SMART SM00382 40 228 3.0E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_13700 b13be6ff0068a8a974e11ea503e3b69d 244 Pfam PF00005 ABC transporter 31 177 2.2E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_13700 b13be6ff0068a8a974e11ea503e3b69d 244 SUPERFAMILY SSF52540 12 232 1.74E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_13700 b13be6ff0068a8a974e11ea503e3b69d 244 Gene3D G3DSA:3.40.50.300 9 242 3.5E-72 T 11-10-2018 AMK58_13700 b13be6ff0068a8a974e11ea503e3b69d 244 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_02055 fb8c2d89f1cd7f0f3d7350baa0953762 137 Pfam PF01878 EVE domain 3 131 1.7E-43 T 11-10-2018 IPR002740 EVE domain AMK58_02055 fb8c2d89f1cd7f0f3d7350baa0953762 137 SUPERFAMILY SSF88697 1 135 1.33E-51 T 11-10-2018 IPR015947 PUA-like superfamily AMK58_02055 fb8c2d89f1cd7f0f3d7350baa0953762 137 Gene3D G3DSA:3.10.590.10 1 137 4.8E-49 T 11-10-2018 AMK58_10105 23548372a4997a80c15fee87844f8dfd 238 SUPERFAMILY SSF75708 56 237 2.22E-37 T 11-10-2018 AMK58_10105 23548372a4997a80c15fee87844f8dfd 238 Pfam PF04344 Chemotaxis phosphatase, CheZ 126 237 2.1E-11 T 11-10-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 AMK58_10105 23548372a4997a80c15fee87844f8dfd 238 Gene3D G3DSA:1.10.287.500 120 170 8.7E-8 T 11-10-2018 AMK58_11655 ea65feaad1e66a482c48b23933e41519 407 Pfam PF01018 GTP1/OBG 5 158 3.1E-58 T 11-10-2018 IPR006169 GTP1/OBG domain AMK58_11655 ea65feaad1e66a482c48b23933e41519 407 SUPERFAMILY SSF82051 2 158 3.14E-55 T 11-10-2018 IPR036726 GTP1/OBG domain superfamily AMK58_11655 ea65feaad1e66a482c48b23933e41519 407 PIRSF PIRSF002401 1 363 2.5E-127 T 11-10-2018 IPR035101 GTP-binding protein, Obg-type AMK58_11655 ea65feaad1e66a482c48b23933e41519 407 Gene3D G3DSA:2.70.210.12 1 158 2.9E-57 T 11-10-2018 IPR036726 GTP1/OBG domain superfamily AMK58_11655 ea65feaad1e66a482c48b23933e41519 407 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 210 225 2.2E-33 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMK58_11655 ea65feaad1e66a482c48b23933e41519 407 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 227 245 2.2E-33 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMK58_11655 ea65feaad1e66a482c48b23933e41519 407 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 2.2E-33 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMK58_11655 ea65feaad1e66a482c48b23933e41519 407 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 2.2E-33 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMK58_11655 ea65feaad1e66a482c48b23933e41519 407 Hamap MF_01454 GTPase Obg [obg]. 2 327 45.821 T 11-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 AMK58_11655 ea65feaad1e66a482c48b23933e41519 407 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 326 1.3E-135 T 11-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 AMK58_11655 ea65feaad1e66a482c48b23933e41519 407 Gene3D G3DSA:3.40.50.300 161 358 1.7E-45 T 11-10-2018 AMK58_11655 ea65feaad1e66a482c48b23933e41519 407 SUPERFAMILY SSF52540 150 334 1.48E-43 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_11655 ea65feaad1e66a482c48b23933e41519 407 Pfam PF01926 50S ribosome-binding GTPase 163 279 1.4E-22 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMK58_11655 ea65feaad1e66a482c48b23933e41519 407 ProSitePatterns PS00905 GTP1/OBG family signature. 212 225 - T 11-10-2018 IPR006074 GTP1/OBG, conserved site GO:0005525 AMK58_25810 0052d170aaf6a965af0a9e7d1ba3b570 399 SUPERFAMILY SSF53187 10 395 1.7E-85 T 11-10-2018 AMK58_25810 0052d170aaf6a965af0a9e7d1ba3b570 399 SUPERFAMILY SSF55031 190 303 4.45E-31 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain AMK58_25810 0052d170aaf6a965af0a9e7d1ba3b570 399 Gene3D G3DSA:3.30.70.360 188 302 3.4E-134 T 11-10-2018 AMK58_25810 0052d170aaf6a965af0a9e7d1ba3b570 399 Gene3D G3DSA:3.40.630.10 21 377 3.4E-134 T 11-10-2018 AMK58_25810 0052d170aaf6a965af0a9e7d1ba3b570 399 Pfam PF01546 Peptidase family M20/M25/M40 79 390 1.2E-33 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 AMK58_25810 0052d170aaf6a965af0a9e7d1ba3b570 399 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 20 381 1.1E-107 T 11-10-2018 IPR017439 Amidohydrolase GO:0016787 AMK58_25810 0052d170aaf6a965af0a9e7d1ba3b570 399 PIRSF PIRSF005962 6 396 1.9E-124 T 11-10-2018 IPR017439 Amidohydrolase GO:0016787 AMK58_25810 0052d170aaf6a965af0a9e7d1ba3b570 399 Pfam PF07687 Peptidase dimerisation domain 193 288 3.4E-11 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain AMK58_09110 a43b796a9f0e5129ef442360c08788fe 596 Gene3D G3DSA:1.10.8.60 327 400 6.4E-25 T 11-10-2018 AMK58_09110 a43b796a9f0e5129ef442360c08788fe 596 SMART SM00382 186 327 1.9E-23 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_09110 a43b796a9f0e5129ef442360c08788fe 596 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 7 591 32.83 T 11-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 AMK58_09110 a43b796a9f0e5129ef442360c08788fe 596 SUPERFAMILY SSF52540 151 395 6.87E-65 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_09110 a43b796a9f0e5129ef442360c08788fe 596 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 190 323 6.2E-42 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMK58_09110 a43b796a9f0e5129ef442360c08788fe 596 Gene3D G3DSA:3.40.50.300 140 326 1.6E-63 T 11-10-2018 AMK58_09110 a43b796a9f0e5129ef442360c08788fe 596 ProSitePatterns PS00674 AAA-protein family signature. 295 313 - T 11-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 AMK58_09110 a43b796a9f0e5129ef442360c08788fe 596 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 136 586 1.8E-179 T 11-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 AMK58_09110 a43b796a9f0e5129ef442360c08788fe 596 SUPERFAMILY SSF140990 407 589 5.23E-63 T 11-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 AMK58_09110 a43b796a9f0e5129ef442360c08788fe 596 Gene3D G3DSA:1.20.58.760 401 595 9.0E-66 T 11-10-2018 AMK58_09110 a43b796a9f0e5129ef442360c08788fe 596 Pfam PF01434 Peptidase family M41 386 584 2.1E-67 T 11-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 AMK58_01220 f36167a6a1c3149eaa1058fa4609589b 166 SMART SM01058 6 116 5.9E-34 T 11-10-2018 IPR003711 CarD-like/TRCF domain AMK58_01220 f36167a6a1c3149eaa1058fa4609589b 166 Gene3D G3DSA:1.20.58.1290 68 163 2.3E-25 T 11-10-2018 AMK58_01220 f36167a6a1c3149eaa1058fa4609589b 166 Pfam PF02559 CarD-like/TRCF domain 7 115 1.9E-19 T 11-10-2018 IPR003711 CarD-like/TRCF domain AMK58_01220 f36167a6a1c3149eaa1058fa4609589b 166 Gene3D G3DSA:2.30.30.840 1 67 1.2E-23 T 11-10-2018 AMK58_01220 f36167a6a1c3149eaa1058fa4609589b 166 SUPERFAMILY SSF141259 3 72 1.01E-15 T 11-10-2018 IPR036101 CarD-like/TRCF domain superfamily AMK58_07545 7bcb579939015015d1dc4b66c7ba8bb8 264 SUPERFAMILY SSF56176 1 165 3.92E-53 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMK58_07545 7bcb579939015015d1dc4b66c7ba8bb8 264 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 172 261 3.0E-6 T 11-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal AMK58_07545 7bcb579939015015d1dc4b66c7ba8bb8 264 SMART SM01092 171 263 2.8E-20 T 11-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal AMK58_07545 7bcb579939015015d1dc4b66c7ba8bb8 264 Gene3D G3DSA:3.30.465.10 55 168 4.0E-36 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AMK58_07545 7bcb579939015015d1dc4b66c7ba8bb8 264 SUPERFAMILY SSF55447 170 261 3.01E-19 T 11-10-2018 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily AMK58_07545 7bcb579939015015d1dc4b66c7ba8bb8 264 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 3 164 2.0E-49 T 11-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 AMK58_07545 7bcb579939015015d1dc4b66c7ba8bb8 264 Gene3D G3DSA:3.30.43.10 1 51 3.6E-17 T 11-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 AMK58_07545 7bcb579939015015d1dc4b66c7ba8bb8 264 Gene3D G3DSA:3.30.390.50 169 263 4.8E-12 T 11-10-2018 AMK58_16125 79b997a3c32bab16cc316af1f79dcb89 593 SUPERFAMILY SSF52540 297 517 2.09E-33 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_16125 79b997a3c32bab16cc316af1f79dcb89 593 Pfam PF00158 Sigma-54 interaction domain 298 454 2.0E-14 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AMK58_16125 79b997a3c32bab16cc316af1f79dcb89 593 Gene3D G3DSA:3.40.50.300 283 461 1.3E-24 T 11-10-2018 AMK58_16125 79b997a3c32bab16cc316af1f79dcb89 593 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 501 510 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site AMK58_16125 79b997a3c32bab16cc316af1f79dcb89 593 SUPERFAMILY SSF46689 499 591 5.38E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_16125 79b997a3c32bab16cc316af1f79dcb89 593 Gene3D G3DSA:3.20.20.70 1 252 6.8E-75 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_16125 79b997a3c32bab16cc316af1f79dcb89 593 SUPERFAMILY SSF51621 3 195 2.86E-48 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMK58_16125 79b997a3c32bab16cc316af1f79dcb89 593 Gene3D G3DSA:1.10.8.60 462 532 1.6E-16 T 11-10-2018 AMK58_16125 79b997a3c32bab16cc316af1f79dcb89 593 Pfam PF09370 Phosphoenolpyruvate hydrolase-like 8 272 6.9E-83 T 11-10-2018 IPR009215 TIM-barrel domain, IGPS-like AMK58_16125 79b997a3c32bab16cc316af1f79dcb89 593 Pfam PF02954 Bacterial regulatory protein, Fis family 551 589 4.4E-10 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMK58_16125 79b997a3c32bab16cc316af1f79dcb89 593 Gene3D G3DSA:1.10.10.60 547 592 1.0E-9 T 11-10-2018 AMK58_01310 8d477ac73e531db1cc37bdabdf289b7a 492 Hamap MF_00484 Glycogen synthase [glgA]. 1 486 45.509 T 11-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 AMK58_01310 8d477ac73e531db1cc37bdabdf289b7a 492 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 1 485 2.7E-161 T 11-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 AMK58_01310 8d477ac73e531db1cc37bdabdf289b7a 492 SUPERFAMILY SSF53756 3 488 1.74E-119 T 11-10-2018 AMK58_01310 8d477ac73e531db1cc37bdabdf289b7a 492 Gene3D G3DSA:3.40.50.2000 259 468 2.8E-173 T 11-10-2018 AMK58_01310 8d477ac73e531db1cc37bdabdf289b7a 492 Pfam PF00534 Glycosyl transferases group 1 300 458 9.4E-12 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 AMK58_01310 8d477ac73e531db1cc37bdabdf289b7a 492 Gene3D G3DSA:3.40.50.2000 3 483 2.8E-173 T 11-10-2018 AMK58_01310 8d477ac73e531db1cc37bdabdf289b7a 492 Pfam PF08323 Starch synthase catalytic domain 2 245 8.8E-71 T 11-10-2018 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 AMK58_27395 acb98e2abd779465e4b0ff42a561670f 342 Gene3D G3DSA:1.10.10.10 15 103 1.5E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_27395 acb98e2abd779465e4b0ff42a561670f 342 Gene3D G3DSA:3.40.190.10 181 284 4.1E-41 T 11-10-2018 AMK58_27395 acb98e2abd779465e4b0ff42a561670f 342 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 54 65 5.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_27395 acb98e2abd779465e4b0ff42a561670f 342 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 44 5.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_27395 acb98e2abd779465e4b0ff42a561670f 342 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 54 5.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_27395 acb98e2abd779465e4b0ff42a561670f 342 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 18 74 2.5E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_27395 acb98e2abd779465e4b0ff42a561670f 342 SUPERFAMILY SSF46785 14 125 1.32E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_27395 acb98e2abd779465e4b0ff42a561670f 342 SUPERFAMILY SSF53850 104 313 8.45E-36 T 11-10-2018 AMK58_27395 acb98e2abd779465e4b0ff42a561670f 342 Pfam PF03466 LysR substrate binding domain 103 311 1.5E-37 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_27395 acb98e2abd779465e4b0ff42a561670f 342 Gene3D G3DSA:3.40.190.10 108 301 4.1E-41 T 11-10-2018 AMK58_06730 652b09d708148fce9731715681b9b550 172 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 13 47 7.7E-5 T 11-10-2018 IPR001451 Hexapeptide repeat AMK58_06730 652b09d708148fce9731715681b9b550 172 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 92 125 2.1E-4 T 11-10-2018 IPR001451 Hexapeptide repeat AMK58_06730 652b09d708148fce9731715681b9b550 172 SUPERFAMILY SSF51161 7 170 1.94E-48 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily AMK58_06730 652b09d708148fce9731715681b9b550 172 Gene3D G3DSA:2.160.10.10 3 172 4.3E-62 T 11-10-2018 AMK58_04295 603d3787f55287b9e4bc2a4c1ead2dd2 293 Pfam PF02634 FdhD/NarQ family 37 268 1.6E-70 T 11-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 AMK58_04295 603d3787f55287b9e4bc2a4c1ead2dd2 293 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 32 262 2.3E-43 T 11-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 AMK58_04295 603d3787f55287b9e4bc2a4c1ead2dd2 293 Gene3D G3DSA:3.10.20.10 38 120 8.3E-9 T 11-10-2018 AMK58_04295 603d3787f55287b9e4bc2a4c1ead2dd2 293 SUPERFAMILY SSF53927 19 268 7.82E-72 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 AMK58_04295 603d3787f55287b9e4bc2a4c1ead2dd2 293 Hamap MF_00187 Sulfur carrier protein FdhD [fdhD]. 15 269 26.156 T 11-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 AMK58_04295 603d3787f55287b9e4bc2a4c1ead2dd2 293 Gene3D G3DSA:3.40.140.10 125 274 1.1E-37 T 11-10-2018 AMK58_04295 603d3787f55287b9e4bc2a4c1ead2dd2 293 PIRSF PIRSF015626 7 273 5.5E-84 T 11-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 AMK58_12620 b368cdce3bd137f48e26ce05fc145d76 220 Pfam PF02224 Cytidylate kinase 5 203 2.1E-53 T 11-10-2018 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 AMK58_12620 b368cdce3bd137f48e26ce05fc145d76 220 SUPERFAMILY SSF52540 1 212 1.28E-41 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_12620 b368cdce3bd137f48e26ce05fc145d76 220 Hamap MF_00238 Cytidylate kinase [cmk]. 3 214 30.311 T 11-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 AMK58_12620 b368cdce3bd137f48e26ce05fc145d76 220 Gene3D G3DSA:3.40.50.300 1 215 6.7E-64 T 11-10-2018 AMK58_12620 b368cdce3bd137f48e26ce05fc145d76 220 TIGRFAM TIGR00017 cmk: cytidylate kinase 1 201 1.3E-49 T 11-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 AMK58_06575 17cfaf9f1cfdeed29a7416b5d9a7c4ba 410 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 47 370 1.4E-63 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AMK58_06575 17cfaf9f1cfdeed29a7416b5d9a7c4ba 410 Gene3D G3DSA:3.40.50.1100 46 399 6.1E-138 T 11-10-2018 AMK58_06575 17cfaf9f1cfdeed29a7416b5d9a7c4ba 410 TIGRFAM TIGR01747 diampropi_NH3ly: diaminopropionate ammonia-lyase family 45 399 1.6E-94 T 11-10-2018 IPR010081 Diaminopropionate ammonia-lyase GO:0008838|GO:0030170 AMK58_06575 17cfaf9f1cfdeed29a7416b5d9a7c4ba 410 SUPERFAMILY SSF53686 47 367 1.44E-60 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMK58_06575 17cfaf9f1cfdeed29a7416b5d9a7c4ba 410 Gene3D G3DSA:3.40.50.1100 84 208 6.1E-138 T 11-10-2018 AMK58_15365 4d1b1b4423b1eabe9c5ccf1ccc838d15 1043 Gene3D G3DSA:3.90.1570.50 111 181 3.4E-6 T 11-10-2018 AMK58_15365 4d1b1b4423b1eabe9c5ccf1ccc838d15 1043 Pfam PF04851 Type III restriction enzyme, res subunit 278 481 4.5E-12 T 11-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 AMK58_15365 4d1b1b4423b1eabe9c5ccf1ccc838d15 1043 Gene3D G3DSA:3.40.50.300 510 741 1.5E-21 T 11-10-2018 AMK58_15365 4d1b1b4423b1eabe9c5ccf1ccc838d15 1043 SUPERFAMILY SSF52540 273 494 3.26E-18 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_15365 4d1b1b4423b1eabe9c5ccf1ccc838d15 1043 Pfam PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) 120 211 2.7E-13 T 11-10-2018 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal GO:0003677|GO:0004519|GO:0006304 AMK58_15365 4d1b1b4423b1eabe9c5ccf1ccc838d15 1043 SMART SM00487 274 510 4.6E-10 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMK58_25685 ede1fefc9bc3b65f6ed3e3c8f61e4aea 285 Gene3D G3DSA:3.90.1530.30 53 115 4.3E-20 T 11-10-2018 AMK58_25685 ede1fefc9bc3b65f6ed3e3c8f61e4aea 285 SUPERFAMILY SSF110849 36 132 7.5E-21 T 11-10-2018 IPR036086 ParB/Sulfiredoxin superfamily AMK58_25685 ede1fefc9bc3b65f6ed3e3c8f61e4aea 285 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 39 186 1.2E-34 T 11-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 AMK58_25685 ede1fefc9bc3b65f6ed3e3c8f61e4aea 285 Pfam PF02195 ParB-like nuclease domain 42 127 1.3E-18 T 11-10-2018 IPR003115 ParB/Sulfiredoxin AMK58_25685 ede1fefc9bc3b65f6ed3e3c8f61e4aea 285 SMART SM00470 40 128 5.2E-27 T 11-10-2018 IPR003115 ParB/Sulfiredoxin AMK58_25685 ede1fefc9bc3b65f6ed3e3c8f61e4aea 285 SUPERFAMILY SSF109709 121 229 4.19E-21 T 11-10-2018 AMK58_25685 ede1fefc9bc3b65f6ed3e3c8f61e4aea 285 Gene3D G3DSA:1.10.10.2830 116 230 4.2E-21 T 11-10-2018 AMK58_24495 af24c8851bdc16c4f86d7ec11c07c1af 126 SMART SM00450 27 123 5.1E-19 T 11-10-2018 IPR001763 Rhodanese-like domain AMK58_24495 af24c8851bdc16c4f86d7ec11c07c1af 126 SUPERFAMILY SSF52821 15 126 1.83E-29 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily AMK58_24495 af24c8851bdc16c4f86d7ec11c07c1af 126 Pfam PF00581 Rhodanese-like domain 35 119 2.5E-13 T 11-10-2018 IPR001763 Rhodanese-like domain AMK58_24495 af24c8851bdc16c4f86d7ec11c07c1af 126 Gene3D G3DSA:3.40.250.10 25 126 1.6E-24 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily AMK58_23085 d820765764956a003482bc611f74142a 231 Gene3D G3DSA:1.10.10.10 5 80 7.2E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_23085 d820765764956a003482bc611f74142a 231 Pfam PF07729 FCD domain 89 211 1.9E-27 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_23085 d820765764956a003482bc611f74142a 231 Pfam PF00392 Bacterial regulatory proteins, gntR family 18 79 1.1E-17 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_23085 d820765764956a003482bc611f74142a 231 SUPERFAMILY SSF48008 87 218 1.18E-25 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_23085 d820765764956a003482bc611f74142a 231 SUPERFAMILY SSF46785 13 105 2.11E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_23085 d820765764956a003482bc611f74142a 231 Gene3D G3DSA:1.20.120.530 85 220 3.8E-30 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_23085 d820765764956a003482bc611f74142a 231 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 39 53 5.7E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_23085 d820765764956a003482bc611f74142a 231 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 53 69 5.7E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_23085 d820765764956a003482bc611f74142a 231 SMART SM00895 89 213 3.5E-22 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_23085 d820765764956a003482bc611f74142a 231 SMART SM00345 21 79 8.3E-18 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_12315 39f42b1d1b920ba44a4ad3e6f864b225 266 SMART SM00382 39 221 2.0E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_12315 39f42b1d1b920ba44a4ad3e6f864b225 266 Pfam PF00005 ABC transporter 31 172 4.5E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_12315 39f42b1d1b920ba44a4ad3e6f864b225 266 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_12315 39f42b1d1b920ba44a4ad3e6f864b225 266 Gene3D G3DSA:3.40.50.300 1 254 3.5E-66 T 11-10-2018 AMK58_12315 39f42b1d1b920ba44a4ad3e6f864b225 266 SUPERFAMILY SSF52540 7 237 5.43E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_21015 91808cd7e9c5ee3a30b191fb8307fd65 357 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 227 243 - T 11-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AMK58_21015 91808cd7e9c5ee3a30b191fb8307fd65 357 SMART SM00937 63 178 3.4E-55 T 11-10-2018 IPR005139 Peptide chain release factor GO:0006415 AMK58_21015 91808cd7e9c5ee3a30b191fb8307fd65 357 Gene3D G3DSA:3.30.160.20 210 296 2.3E-97 T 11-10-2018 AMK58_21015 91808cd7e9c5ee3a30b191fb8307fd65 357 SUPERFAMILY SSF75620 12 353 5.89E-126 T 11-10-2018 AMK58_21015 91808cd7e9c5ee3a30b191fb8307fd65 357 Pfam PF00472 RF-1 domain 211 320 7.8E-42 T 11-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AMK58_21015 91808cd7e9c5ee3a30b191fb8307fd65 357 Pfam PF03462 PCRF domain 12 203 7.9E-66 T 11-10-2018 IPR005139 Peptide chain release factor GO:0006415 AMK58_21015 91808cd7e9c5ee3a30b191fb8307fd65 357 Gene3D G3DSA:3.30.70.1660 112 342 2.3E-97 T 11-10-2018 AMK58_21015 91808cd7e9c5ee3a30b191fb8307fd65 357 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 5 356 9.0E-150 T 11-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 AMK58_21015 91808cd7e9c5ee3a30b191fb8307fd65 357 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 3 357 38.855 T 11-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 AMK58_13225 6b90b37ffde53be93c80aa8a5b823e32 603 Pfam PF00332 Glycosyl hydrolases family 17 226 303 4.9E-7 T 11-10-2018 IPR000490 Glycoside hydrolase family 17 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.39 AMK58_13225 6b90b37ffde53be93c80aa8a5b823e32 603 SUPERFAMILY SSF51445 37 303 2.23E-54 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily AMK58_13225 6b90b37ffde53be93c80aa8a5b823e32 603 Gene3D G3DSA:3.20.20.80 51 308 2.4E-14 T 11-10-2018 AMK58_24715 ff506fa5de712b5aabca5c1dbf75e889 384 Pfam PF07690 Major Facilitator Superfamily 229 372 1.7E-11 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMK58_24715 ff506fa5de712b5aabca5c1dbf75e889 384 Gene3D G3DSA:1.20.1250.20 192 381 1.1E-13 T 11-10-2018 AMK58_24715 ff506fa5de712b5aabca5c1dbf75e889 384 Gene3D G3DSA:1.20.1250.20 1 180 4.2E-9 T 11-10-2018 AMK58_24715 ff506fa5de712b5aabca5c1dbf75e889 384 SUPERFAMILY SSF103473 1 372 2.75E-32 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_21185 9e6c43ab0d80d6605b3d58ebb887e5d5 255 SUPERFAMILY SSF51735 5 254 1.91E-82 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_21185 9e6c43ab0d80d6605b3d58ebb887e5d5 255 Gene3D G3DSA:3.40.50.720 1 255 3.9E-78 T 11-10-2018 AMK58_21185 9e6c43ab0d80d6605b3d58ebb887e5d5 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 1.1E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_21185 9e6c43ab0d80d6605b3d58ebb887e5d5 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 1.1E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_21185 9e6c43ab0d80d6605b3d58ebb887e5d5 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 1.1E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_21185 9e6c43ab0d80d6605b3d58ebb887e5d5 255 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 252 1.8E-65 T 11-10-2018 AMK58_21185 9e6c43ab0d80d6605b3d58ebb887e5d5 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 3.3E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_21185 9e6c43ab0d80d6605b3d58ebb887e5d5 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 3.3E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_21185 9e6c43ab0d80d6605b3d58ebb887e5d5 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 3.3E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_21185 9e6c43ab0d80d6605b3d58ebb887e5d5 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 3.3E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_21185 9e6c43ab0d80d6605b3d58ebb887e5d5 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 3.3E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_21185 9e6c43ab0d80d6605b3d58ebb887e5d5 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 3.3E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_18825 134fcb777b65879bd3df6fe2d272a8aa 196 Gene3D G3DSA:1.10.287.110 135 194 6.6E-6 T 11-10-2018 IPR036869 Chaperone J-domain superfamily AMK58_18825 134fcb777b65879bd3df6fe2d272a8aa 196 SUPERFAMILY SSF46565 137 193 4.71E-7 T 11-10-2018 IPR036869 Chaperone J-domain superfamily AMK58_26150 14530c1e968cb242fc14177e82fd929e 342 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 120 2.5E-26 T 11-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMK58_26150 14530c1e968cb242fc14177e82fd929e 342 Gene3D G3DSA:3.30.360.10 130 332 9.2E-80 T 11-10-2018 AMK58_26150 14530c1e968cb242fc14177e82fd929e 342 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 135 218 2.8E-7 T 11-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 AMK58_26150 14530c1e968cb242fc14177e82fd929e 342 SUPERFAMILY SSF55347 132 277 3.76E-26 T 11-10-2018 AMK58_26150 14530c1e968cb242fc14177e82fd929e 342 SUPERFAMILY SSF51735 4 157 1.78E-40 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_26150 14530c1e968cb242fc14177e82fd929e 342 Gene3D G3DSA:3.40.50.720 4 313 9.2E-80 T 11-10-2018 AMK58_07910 6ec538d184f08a9d0ed26258f4b09c41 191 Gene3D G3DSA:3.40.630.30 12 160 1.6E-20 T 11-10-2018 AMK58_07910 6ec538d184f08a9d0ed26258f4b09c41 191 Pfam PF00583 Acetyltransferase (GNAT) family 45 137 1.3E-12 T 11-10-2018 IPR000182 GNAT domain AMK58_07910 6ec538d184f08a9d0ed26258f4b09c41 191 SUPERFAMILY SSF55729 15 170 3.26E-22 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_15755 3b7721937c508aa31ce1de9204dfcbd8 567 Pfam PF00005 ABC transporter 337 496 1.5E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_15755 3b7721937c508aa31ce1de9204dfcbd8 567 Gene3D G3DSA:3.40.50.300 317 567 1.0E-61 T 11-10-2018 AMK58_15755 3b7721937c508aa31ce1de9204dfcbd8 567 Pfam PF02653 Branched-chain amino acid transport system / permease component 4 275 7.2E-46 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_15755 3b7721937c508aa31ce1de9204dfcbd8 567 SUPERFAMILY SSF52540 320 563 2.19E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_15755 3b7721937c508aa31ce1de9204dfcbd8 567 SMART SM00382 345 544 5.9E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_26955 338c870c3f34d69074c84c1fb656175c 353 Pfam PF08402 TOBE domain 270 345 4.0E-12 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMK58_26955 338c870c3f34d69074c84c1fb656175c 353 Gene3D G3DSA:2.40.50.940 223 343 7.7E-12 T 11-10-2018 AMK58_26955 338c870c3f34d69074c84c1fb656175c 353 SUPERFAMILY SSF52540 4 242 7.78E-86 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_26955 338c870c3f34d69074c84c1fb656175c 353 SUPERFAMILY SSF50331 237 346 1.7E-13 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMK58_26955 338c870c3f34d69074c84c1fb656175c 353 Gene3D G3DSA:2.40.50.140 277 337 7.7E-12 T 11-10-2018 AMK58_26955 338c870c3f34d69074c84c1fb656175c 353 SMART SM00382 28 211 2.8E-21 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_26955 338c870c3f34d69074c84c1fb656175c 353 Pfam PF00005 ABC transporter 20 161 3.8E-36 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_26955 338c870c3f34d69074c84c1fb656175c 353 Gene3D G3DSA:3.40.50.300 3 222 2.2E-69 T 11-10-2018 AMK58_26955 338c870c3f34d69074c84c1fb656175c 353 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_23120 d0a95f58521a6c6476a1577ddc770dd1 291 Pfam PF00550 Phosphopantetheine attachment site 221 275 1.3E-6 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain AMK58_23120 d0a95f58521a6c6476a1577ddc770dd1 291 Gene3D G3DSA:1.10.1200.10 211 283 2.8E-21 T 11-10-2018 IPR036736 ACP-like superfamily AMK58_23120 d0a95f58521a6c6476a1577ddc770dd1 291 PIRSF PIRSF001111 1 286 3.5E-114 T 11-10-2018 IPR016291 Isochorismatase GO:0008908 AMK58_23120 d0a95f58521a6c6476a1577ddc770dd1 291 SUPERFAMILY SSF47336 230 286 3.27E-8 T 11-10-2018 IPR036736 ACP-like superfamily AMK58_23120 d0a95f58521a6c6476a1577ddc770dd1 291 PRINTS PR01398 Isochorismatase signature 112 134 1.4E-42 T 11-10-2018 IPR016291 Isochorismatase GO:0008908 AMK58_23120 d0a95f58521a6c6476a1577ddc770dd1 291 PRINTS PR01398 Isochorismatase signature 186 203 1.4E-42 T 11-10-2018 IPR016291 Isochorismatase GO:0008908 AMK58_23120 d0a95f58521a6c6476a1577ddc770dd1 291 PRINTS PR01398 Isochorismatase signature 2 14 1.4E-42 T 11-10-2018 IPR016291 Isochorismatase GO:0008908 AMK58_23120 d0a95f58521a6c6476a1577ddc770dd1 291 PRINTS PR01398 Isochorismatase signature 63 80 1.4E-42 T 11-10-2018 IPR016291 Isochorismatase GO:0008908 AMK58_23120 d0a95f58521a6c6476a1577ddc770dd1 291 PRINTS PR01398 Isochorismatase signature 80 99 1.4E-42 T 11-10-2018 IPR016291 Isochorismatase GO:0008908 AMK58_23120 d0a95f58521a6c6476a1577ddc770dd1 291 PRINTS PR01398 Isochorismatase signature 168 186 1.4E-42 T 11-10-2018 IPR016291 Isochorismatase GO:0008908 AMK58_23120 d0a95f58521a6c6476a1577ddc770dd1 291 Pfam PF00857 Isochorismatase family 32 201 1.8E-35 T 11-10-2018 IPR000868 Isochorismatase-like GO:0003824 AMK58_23120 d0a95f58521a6c6476a1577ddc770dd1 291 Gene3D G3DSA:3.40.50.850 1 207 5.5E-70 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 AMK58_23120 d0a95f58521a6c6476a1577ddc770dd1 291 SUPERFAMILY SSF52499 1 224 1.07E-61 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 AMK58_24730 b5661f683dd21da6d255918f0cd38084 265 SUPERFAMILY SSF53850 9 262 3.53E-71 T 11-10-2018 AMK58_24730 b5661f683dd21da6d255918f0cd38084 265 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 66 79 - T 11-10-2018 IPR018313 Solute-binding protein family 3, conserved site AMK58_24730 b5661f683dd21da6d255918f0cd38084 265 Gene3D G3DSA:3.40.190.10 130 223 1.8E-72 T 11-10-2018 AMK58_24730 b5661f683dd21da6d255918f0cd38084 265 SMART SM00062 44 264 2.7E-72 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMK58_24730 b5661f683dd21da6d255918f0cd38084 265 SMART SM00079 44 263 1.2E-4 T 11-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 AMK58_24730 b5661f683dd21da6d255918f0cd38084 265 Gene3D G3DSA:3.40.190.10 47 261 1.8E-72 T 11-10-2018 AMK58_24730 b5661f683dd21da6d255918f0cd38084 265 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 46 262 1.9E-64 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMK58_24710 9a7b329e044bd559a0a0a08bdee4e7f2 398 Gene3D G3DSA:3.40.50.300 5 167 3.7E-29 T 11-10-2018 AMK58_24710 9a7b329e044bd559a0a0a08bdee4e7f2 398 Pfam PF13538 UvrD-like helicase C-terminal domain 334 380 7.5E-16 T 11-10-2018 IPR027785 UvrD-like helicase C-terminal domain AMK58_24710 9a7b329e044bd559a0a0a08bdee4e7f2 398 Pfam PF13604 AAA domain 31 194 4.4E-18 T 11-10-2018 AMK58_24710 9a7b329e044bd559a0a0a08bdee4e7f2 398 SUPERFAMILY SSF52540 2 386 5.56E-33 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_24710 9a7b329e044bd559a0a0a08bdee4e7f2 398 Gene3D G3DSA:3.40.50.300 311 388 7.5E-14 T 11-10-2018 AMK58_09315 63bee1df31733a403fcf93ce9e3546d8 670 Pfam PF02779 Transketolase, pyrimidine binding domain 359 529 6.4E-46 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMK58_09315 63bee1df31733a403fcf93ce9e3546d8 670 TIGRFAM TIGR00232 tktlase_bact: transketolase 16 668 2.9E-250 T 11-10-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 AMK58_09315 63bee1df31733a403fcf93ce9e3546d8 670 Gene3D G3DSA:3.40.50.970 331 538 4.4E-78 T 11-10-2018 AMK58_09315 63bee1df31733a403fcf93ce9e3546d8 670 SUPERFAMILY SSF52518 14 320 7.07E-114 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMK58_09315 63bee1df31733a403fcf93ce9e3546d8 670 SUPERFAMILY SSF52518 345 531 1.07E-66 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMK58_09315 63bee1df31733a403fcf93ce9e3546d8 670 Gene3D G3DSA:3.40.50.920 544 670 6.1E-39 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMK58_09315 63bee1df31733a403fcf93ce9e3546d8 670 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 15 322 4.6E-137 T 11-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AMK58_09315 63bee1df31733a403fcf93ce9e3546d8 670 Pfam PF02780 Transketolase, C-terminal domain 546 662 8.0E-13 T 11-10-2018 IPR033248 Transketolase, C-terminal domain AMK58_09315 63bee1df31733a403fcf93ce9e3546d8 670 SUPERFAMILY SSF52922 540 669 3.93E-40 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMK58_09315 63bee1df31733a403fcf93ce9e3546d8 670 Gene3D G3DSA:3.40.50.970 12 330 2.9E-117 T 11-10-2018 AMK58_09315 63bee1df31733a403fcf93ce9e3546d8 670 ProSitePatterns PS00801 Transketolase signature 1. 21 41 - T 11-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AMK58_09315 63bee1df31733a403fcf93ce9e3546d8 670 SMART SM00861 358 530 4.0E-66 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMK58_09315 63bee1df31733a403fcf93ce9e3546d8 670 ProSitePatterns PS00802 Transketolase signature 2. 472 488 - T 11-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AMK58_14465 30f5dddcbbda2d82d0e67587ddaf11bc 600 Gene3D G3DSA:1.25.40.10 15 114 2.2E-26 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_14465 30f5dddcbbda2d82d0e67587ddaf11bc 600 Gene3D G3DSA:1.25.40.10 115 312 5.9E-40 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_14465 30f5dddcbbda2d82d0e67587ddaf11bc 600 Gene3D G3DSA:3.40.50.2000 487 578 2.3E-5 T 11-10-2018 AMK58_14465 30f5dddcbbda2d82d0e67587ddaf11bc 600 SUPERFAMILY SSF53756 339 578 4.71E-23 T 11-10-2018 AMK58_14465 30f5dddcbbda2d82d0e67587ddaf11bc 600 SMART SM00028 218 251 1.9E-4 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14465 30f5dddcbbda2d82d0e67587ddaf11bc 600 SMART SM00028 116 149 0.036 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14465 30f5dddcbbda2d82d0e67587ddaf11bc 600 SMART SM00028 252 285 7.1 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14465 30f5dddcbbda2d82d0e67587ddaf11bc 600 SMART SM00028 14 47 20.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14465 30f5dddcbbda2d82d0e67587ddaf11bc 600 SMART SM00028 184 217 0.0011 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14465 30f5dddcbbda2d82d0e67587ddaf11bc 600 SMART SM00028 82 115 2.8E-4 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14465 30f5dddcbbda2d82d0e67587ddaf11bc 600 SMART SM00028 48 81 0.33 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14465 30f5dddcbbda2d82d0e67587ddaf11bc 600 Pfam PF13176 Tetratricopeptide repeat 84 112 1.7E-5 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14465 30f5dddcbbda2d82d0e67587ddaf11bc 600 Pfam PF13432 Tetratricopeptide repeat 19 82 1.4E-10 T 11-10-2018 AMK58_14465 30f5dddcbbda2d82d0e67587ddaf11bc 600 Pfam PF13432 Tetratricopeptide repeat 122 181 1.8E-5 T 11-10-2018 AMK58_14465 30f5dddcbbda2d82d0e67587ddaf11bc 600 Pfam PF13424 Tetratricopeptide repeat 186 248 3.0E-9 T 11-10-2018 AMK58_14465 30f5dddcbbda2d82d0e67587ddaf11bc 600 SUPERFAMILY SSF48452 18 251 5.07E-41 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_24390 95a01572362c695dbce236d738d9431e 327 Gene3D G3DSA:3.40.190.170 22 327 1.7E-92 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily AMK58_24390 95a01572362c695dbce236d738d9431e 327 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 34 312 3.9E-72 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 AMK58_24390 95a01572362c695dbce236d738d9431e 327 PIRSF PIRSF006470 1 327 7.9E-71 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 AMK58_14510 82a584a07eb45dfea9d3de0afb655c16 2837 Gene3D G3DSA:2.150.10.10 2716 2833 6.8E-23 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_14510 82a584a07eb45dfea9d3de0afb655c16 2837 SUPERFAMILY SSF51120 2679 2829 2.44E-29 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_14510 82a584a07eb45dfea9d3de0afb655c16 2837 SUPERFAMILY SSF51120 2571 2710 1.31E-25 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_14510 82a584a07eb45dfea9d3de0afb655c16 2837 Pfam PF12245 Bacterial Ig-like domain (group 3) 2024 2044 4.3 T 11-10-2018 IPR022038 Bacterial Ig-like domain AMK58_14510 82a584a07eb45dfea9d3de0afb655c16 2837 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2731 2749 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_14510 82a584a07eb45dfea9d3de0afb655c16 2837 Gene3D G3DSA:2.150.10.10 2632 2674 2.6E-11 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_14510 82a584a07eb45dfea9d3de0afb655c16 2837 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2749 2767 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_14510 82a584a07eb45dfea9d3de0afb655c16 2837 Gene3D G3DSA:2.150.10.10 2675 2715 2.3E-6 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_14510 82a584a07eb45dfea9d3de0afb655c16 2837 Pfam PF13753 Putative flagellar system-associated repeat 531 606 2.4E-9 T 11-10-2018 IPR028059 Putative flagellar system-associated repeat AMK58_14510 82a584a07eb45dfea9d3de0afb655c16 2837 Gene3D G3DSA:2.150.10.10 2594 2631 2.3E-7 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_14510 82a584a07eb45dfea9d3de0afb655c16 2837 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2609 2624 0.0017 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_14510 82a584a07eb45dfea9d3de0afb655c16 2837 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2574 2589 0.033 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_14510 82a584a07eb45dfea9d3de0afb655c16 2837 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2627 2643 7.3 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_14510 82a584a07eb45dfea9d3de0afb655c16 2837 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2734 2751 0.0015 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_14510 82a584a07eb45dfea9d3de0afb655c16 2837 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2680 2696 0.12 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_14510 82a584a07eb45dfea9d3de0afb655c16 2837 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 18 27 58.0 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_14510 82a584a07eb45dfea9d3de0afb655c16 2837 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2753 2769 0.14 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_14510 82a584a07eb45dfea9d3de0afb655c16 2837 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2663 2679 0.0017 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_14510 82a584a07eb45dfea9d3de0afb655c16 2837 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2593 2607 0.14 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_14510 82a584a07eb45dfea9d3de0afb655c16 2837 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2644 2661 0.032 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_14510 82a584a07eb45dfea9d3de0afb655c16 2837 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2717 2733 0.0028 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_14510 82a584a07eb45dfea9d3de0afb655c16 2837 Gene3D G3DSA:2.60.40.10 1568 1653 4.3E-13 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_14510 82a584a07eb45dfea9d3de0afb655c16 2837 Gene3D G3DSA:2.60.40.10 1186 1273 7.5E-11 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_14510 82a584a07eb45dfea9d3de0afb655c16 2837 Gene3D G3DSA:2.60.40.10 2142 2229 1.5E-14 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_14510 82a584a07eb45dfea9d3de0afb655c16 2837 Gene3D G3DSA:2.60.40.10 2046 2132 1.8E-12 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_14510 82a584a07eb45dfea9d3de0afb655c16 2837 Gene3D G3DSA:2.60.40.10 1758 1844 2.5E-14 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_14510 82a584a07eb45dfea9d3de0afb655c16 2837 Gene3D G3DSA:2.60.40.10 1854 1940 2.6E-13 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_14510 82a584a07eb45dfea9d3de0afb655c16 2837 Gene3D G3DSA:2.60.40.10 1473 1558 4.1E-13 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_14510 82a584a07eb45dfea9d3de0afb655c16 2837 Gene3D G3DSA:2.60.40.10 1378 1463 7.2E-13 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_14510 82a584a07eb45dfea9d3de0afb655c16 2837 Gene3D G3DSA:2.60.40.10 1663 1748 3.1E-13 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_14510 82a584a07eb45dfea9d3de0afb655c16 2837 Gene3D G3DSA:2.60.40.10 1944 2044 4.9E-13 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_14510 82a584a07eb45dfea9d3de0afb655c16 2837 Gene3D G3DSA:2.60.40.10 1274 1376 2.6E-13 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_14510 82a584a07eb45dfea9d3de0afb655c16 2837 Gene3D G3DSA:2.150.10.10 2488 2593 7.5E-6 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_14510 82a584a07eb45dfea9d3de0afb655c16 2837 PRINTS PR00313 NodO calcium binding signature 323 331 6.4E-6 T 11-10-2018 AMK58_14510 82a584a07eb45dfea9d3de0afb655c16 2837 PRINTS PR00313 NodO calcium binding signature 161 169 6.4E-6 T 11-10-2018 AMK58_14510 82a584a07eb45dfea9d3de0afb655c16 2837 PRINTS PR00313 NodO calcium binding signature 18 29 6.4E-6 T 11-10-2018 AMK58_14510 82a584a07eb45dfea9d3de0afb655c16 2837 PRINTS PR00313 NodO calcium binding signature 376 385 6.4E-6 T 11-10-2018 AMK58_01455 572db3bc5f1caf55875b745a8e3fde18 243 Pfam PF02146 Sir2 family 18 192 4.3E-47 T 11-10-2018 IPR003000 Sirtuin family GO:0070403 AMK58_01455 572db3bc5f1caf55875b745a8e3fde18 243 Gene3D G3DSA:3.40.50.1220 13 234 2.4E-76 T 11-10-2018 AMK58_01455 572db3bc5f1caf55875b745a8e3fde18 243 Gene3D G3DSA:3.30.1600.10 27 164 2.4E-76 T 11-10-2018 IPR026591 Sirtuin, catalytic core small domain superfamily AMK58_01455 572db3bc5f1caf55875b745a8e3fde18 243 Hamap MF_01121 NAD-dependent protein deacylase [cobB]. 11 242 53.335 T 11-10-2018 IPR027546 Sirtuin, class III GO:0036054|GO:0036055|GO:0070403 Reactome: R-HSA-2151201 AMK58_01455 572db3bc5f1caf55875b745a8e3fde18 243 SUPERFAMILY SSF52467 3 240 3.48E-71 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AMK58_09180 39b3bedb48d9db5405e792960629093e 139 Gene3D G3DSA:3.30.300.20 39 136 1.0E-30 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta AMK58_09180 39b3bedb48d9db5405e792960629093e 139 Gene3D G3DSA:2.20.25.10 1 32 2.3E-17 T 11-10-2018 AMK58_09180 39b3bedb48d9db5405e792960629093e 139 Pfam PF02566 OsmC-like protein 34 130 3.1E-17 T 11-10-2018 IPR003718 OsmC/Ohr family AMK58_09180 39b3bedb48d9db5405e792960629093e 139 SUPERFAMILY SSF82784 1 137 5.5E-43 T 11-10-2018 IPR036102 OsmC/Ohr superfamily AMK58_10565 8b7fbb3e41525a10d9c312b8cce0db32 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 430 459 4.7E-23 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_10565 8b7fbb3e41525a10d9c312b8cce0db32 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 320 349 4.7E-23 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_10565 8b7fbb3e41525a10d9c312b8cce0db32 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 401 428 4.7E-23 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_10565 8b7fbb3e41525a10d9c312b8cce0db32 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 478 507 4.7E-23 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_10565 8b7fbb3e41525a10d9c312b8cce0db32 563 SMART SM00304 214 267 2.4E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_10565 8b7fbb3e41525a10d9c312b8cce0db32 563 SMART SM00283 303 557 2.2E-45 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_10565 8b7fbb3e41525a10d9c312b8cce0db32 563 SUPERFAMILY SSF58104 242 556 2.09E-63 T 11-10-2018 AMK58_10565 8b7fbb3e41525a10d9c312b8cce0db32 563 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 367 524 3.5E-31 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_10565 8b7fbb3e41525a10d9c312b8cce0db32 563 Pfam PF12729 Four helix bundle sensory module for signal transduction 6 187 2.2E-28 T 11-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain AMK58_10565 8b7fbb3e41525a10d9c312b8cce0db32 563 Gene3D G3DSA:1.10.287.950 269 561 9.5E-55 T 11-10-2018 AMK58_10565 8b7fbb3e41525a10d9c312b8cce0db32 563 Gene3D G3DSA:1.10.8.500 215 265 1.7E-12 T 11-10-2018 AMK58_25490 e2dd5e0006bc63e5b0489fb9dedb762a 158 Pfam PF12802 MarR family 38 98 1.6E-11 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_25490 e2dd5e0006bc63e5b0489fb9dedb762a 158 SMART SM00347 33 134 1.4E-13 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_25490 e2dd5e0006bc63e5b0489fb9dedb762a 158 PRINTS PR00598 Bacterial regulatory protein MarR family signature 124 144 5.3E-5 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_25490 e2dd5e0006bc63e5b0489fb9dedb762a 158 PRINTS PR00598 Bacterial regulatory protein MarR family signature 94 110 5.3E-5 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_25490 e2dd5e0006bc63e5b0489fb9dedb762a 158 PRINTS PR00598 Bacterial regulatory protein MarR family signature 75 90 5.3E-5 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_25490 e2dd5e0006bc63e5b0489fb9dedb762a 158 SUPERFAMILY SSF46785 9 148 3.48E-26 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_25490 e2dd5e0006bc63e5b0489fb9dedb762a 158 Gene3D G3DSA:1.10.10.10 12 145 5.1E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_14830 1287fb648598711d8d2d009672da8c21 468 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 7 463 2.4E-63 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 AMK58_14830 1287fb648598711d8d2d009672da8c21 468 SUPERFAMILY SSF64518 126 463 7.06E-15 T 11-10-2018 AMK58_14830 1287fb648598711d8d2d009672da8c21 468 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 411 463 1.0E-8 T 11-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain AMK58_15270 969ea5c815ccf7ce283c2b956c24b847 115 SUPERFAMILY SSF47090 30 99 7.53E-14 T 11-10-2018 IPR036365 PGBD-like superfamily AMK58_15270 969ea5c815ccf7ce283c2b956c24b847 115 Gene3D G3DSA:1.10.101.10 28 101 1.9E-11 T 11-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 AMK58_15270 969ea5c815ccf7ce283c2b956c24b847 115 Pfam PF01471 Putative peptidoglycan binding domain 41 93 6.5E-12 T 11-10-2018 IPR002477 Peptidoglycan binding-like AMK58_14280 0b8fb2102e34221df5bd5eb1ab9c2a8a 658 SUPERFAMILY SSF81345 340 652 2.62E-60 T 11-10-2018 IPR037294 ABC transporter, BtuC-like AMK58_14280 0b8fb2102e34221df5bd5eb1ab9c2a8a 658 Gene3D G3DSA:1.10.3470.10 335 654 6.9E-69 T 11-10-2018 IPR037294 ABC transporter, BtuC-like AMK58_14280 0b8fb2102e34221df5bd5eb1ab9c2a8a 658 Gene3D G3DSA:1.10.3470.10 2 324 1.2E-64 T 11-10-2018 IPR037294 ABC transporter, BtuC-like AMK58_14280 0b8fb2102e34221df5bd5eb1ab9c2a8a 658 Pfam PF01032 FecCD transport family 379 651 6.2E-68 T 11-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 AMK58_14280 0b8fb2102e34221df5bd5eb1ab9c2a8a 658 Pfam PF01032 FecCD transport family 44 318 7.8E-59 T 11-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 AMK58_14280 0b8fb2102e34221df5bd5eb1ab9c2a8a 658 SUPERFAMILY SSF81345 12 320 1.29E-51 T 11-10-2018 IPR037294 ABC transporter, BtuC-like AMK58_08935 6e88d4dc1f071a83bf0eb797401a6fc7 865 Pfam PF03781 Sulfatase-modifying factor enzyme 1 637 862 1.3E-55 T 11-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 AMK58_08935 6e88d4dc1f071a83bf0eb797401a6fc7 865 Pfam PF00656 Caspase domain 55 282 4.4E-30 T 11-10-2018 AMK58_08935 6e88d4dc1f071a83bf0eb797401a6fc7 865 SUPERFAMILY SSF56436 637 864 1.11E-65 T 11-10-2018 IPR016187 C-type lectin fold AMK58_08935 6e88d4dc1f071a83bf0eb797401a6fc7 865 Gene3D G3DSA:3.90.1580.10 624 864 1.4E-58 T 11-10-2018 AMK58_08935 6e88d4dc1f071a83bf0eb797401a6fc7 865 SUPERFAMILY SSF52129 43 284 5.68E-45 T 11-10-2018 IPR029030 Caspase-like domain superfamily AMK58_08935 6e88d4dc1f071a83bf0eb797401a6fc7 865 Gene3D G3DSA:3.40.50.1460 39 284 5.6E-52 T 11-10-2018 AMK58_19150 33137f2dba75aa4c49d9ccde8149a2ed 338 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 152 160 - T 11-10-2018 IPR034408 Sulphate/thiosulphate-binding site GO:1901681 AMK58_19150 33137f2dba75aa4c49d9ccde8149a2ed 338 Pfam PF13531 Bacterial extracellular solute-binding protein 36 287 4.4E-44 T 11-10-2018 AMK58_19150 33137f2dba75aa4c49d9ccde8149a2ed 338 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 25 333 9.8E-143 T 11-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 AMK58_19150 33137f2dba75aa4c49d9ccde8149a2ed 338 Gene3D G3DSA:3.40.190.10 121 332 4.1E-136 T 11-10-2018 AMK58_19150 33137f2dba75aa4c49d9ccde8149a2ed 338 SUPERFAMILY SSF53850 30 333 7.98E-85 T 11-10-2018 AMK58_19150 33137f2dba75aa4c49d9ccde8149a2ed 338 Gene3D G3DSA:3.40.190.10 34 302 4.1E-136 T 11-10-2018 AMK58_14355 8e355aa84d5a09a1fafdcb5c178d4ea7 207 SMART SM00448 6 117 3.0E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_14355 8e355aa84d5a09a1fafdcb5c178d4ea7 207 SUPERFAMILY SSF46894 135 198 2.34E-18 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMK58_14355 8e355aa84d5a09a1fafdcb5c178d4ea7 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 174 186 5.6E-14 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_14355 8e355aa84d5a09a1fafdcb5c178d4ea7 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 144 158 5.6E-14 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_14355 8e355aa84d5a09a1fafdcb5c178d4ea7 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 158 174 5.6E-14 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_14355 8e355aa84d5a09a1fafdcb5c178d4ea7 207 Pfam PF00072 Response regulator receiver domain 8 117 4.9E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_14355 8e355aa84d5a09a1fafdcb5c178d4ea7 207 Gene3D G3DSA:1.10.10.10 135 199 4.4E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_14355 8e355aa84d5a09a1fafdcb5c178d4ea7 207 Pfam PF00196 Bacterial regulatory proteins, luxR family 143 198 9.8E-24 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_14355 8e355aa84d5a09a1fafdcb5c178d4ea7 207 ProSitePatterns PS00622 LuxR-type HTH domain signature. 158 185 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_14355 8e355aa84d5a09a1fafdcb5c178d4ea7 207 SMART SM00421 141 198 2.2E-25 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_14355 8e355aa84d5a09a1fafdcb5c178d4ea7 207 SUPERFAMILY SSF52172 6 155 1.12E-30 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_14355 8e355aa84d5a09a1fafdcb5c178d4ea7 207 Gene3D G3DSA:3.40.50.2300 2 132 3.9E-46 T 11-10-2018 AMK58_01610 d457cb37a19d54f6dd65db2433d7717f 453 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 169 187 4.0E-12 T 11-10-2018 AMK58_01610 d457cb37a19d54f6dd65db2433d7717f 453 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 290 312 4.0E-12 T 11-10-2018 AMK58_01610 d457cb37a19d54f6dd65db2433d7717f 453 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 109 127 4.0E-12 T 11-10-2018 AMK58_01610 d457cb37a19d54f6dd65db2433d7717f 453 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 17 36 4.0E-12 T 11-10-2018 AMK58_01610 d457cb37a19d54f6dd65db2433d7717f 453 SUPERFAMILY SSF51905 12 228 3.7E-35 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_01610 d457cb37a19d54f6dd65db2433d7717f 453 SUPERFAMILY SSF51905 161 338 3.01E-23 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_01610 d457cb37a19d54f6dd65db2433d7717f 453 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 16 333 1.4E-56 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMK58_01610 d457cb37a19d54f6dd65db2433d7717f 453 Gene3D G3DSA:3.50.50.100 13 414 2.9E-120 T 11-10-2018 AMK58_01610 d457cb37a19d54f6dd65db2433d7717f 453 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 169 194 1.4E-8 T 11-10-2018 AMK58_01610 d457cb37a19d54f6dd65db2433d7717f 453 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 16 38 1.4E-8 T 11-10-2018 AMK58_01610 d457cb37a19d54f6dd65db2433d7717f 453 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 305 312 1.4E-8 T 11-10-2018 AMK58_12220 04eefbafcee19499e43389057462c64e 266 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 266 100.923 T 11-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AMK58_12220 04eefbafcee19499e43389057462c64e 266 PIRSF PIRSF000386 11 261 2.7E-87 T 11-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AMK58_12220 04eefbafcee19499e43389057462c64e 266 Gene3D G3DSA:3.40.1280.10 11 185 9.4E-62 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMK58_12220 04eefbafcee19499e43389057462c64e 266 Gene3D G3DSA:1.10.1270.20 186 251 3.6E-26 T 11-10-2018 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AMK58_12220 04eefbafcee19499e43389057462c64e 266 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 33 238 2.3E-50 T 11-10-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AMK58_12220 04eefbafcee19499e43389057462c64e 266 SUPERFAMILY SSF75217 11 250 9.16E-89 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases AMK58_12220 04eefbafcee19499e43389057462c64e 266 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 14 246 1.0E-78 T 11-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AMK58_22360 7f69a1bc50ba07923ccf79eb5a830cf7 549 TIGRFAM TIGR03121 one_C_dehyd_A: formylmethanofuran dehydrogenase subunit A 3 534 7.1E-207 T 11-10-2018 IPR012027 Formylmethanofuran dehydrogenase, subunit A AMK58_22360 7f69a1bc50ba07923ccf79eb5a830cf7 549 SUPERFAMILY SSF51338 4 63 2.38E-10 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMK58_22360 7f69a1bc50ba07923ccf79eb5a830cf7 549 SUPERFAMILY SSF51338 420 504 4.01E-16 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMK58_22360 7f69a1bc50ba07923ccf79eb5a830cf7 549 Gene3D G3DSA:3.20.20.140 3 112 7.9E-9 T 11-10-2018 AMK58_22360 7f69a1bc50ba07923ccf79eb5a830cf7 549 PIRSF PIRSF006453 1 542 1.0E-219 T 11-10-2018 IPR012027 Formylmethanofuran dehydrogenase, subunit A AMK58_22360 7f69a1bc50ba07923ccf79eb5a830cf7 549 Pfam PF07969 Amidohydrolase family 43 489 1.4E-55 T 11-10-2018 IPR013108 Amidohydrolase 3 AMK58_22360 7f69a1bc50ba07923ccf79eb5a830cf7 549 SUPERFAMILY SSF51556 55 446 8.16E-28 T 11-10-2018 IPR032466 Metal-dependent hydrolase AMK58_08870 6a3dd12578d6512a412f48febbd3a907 716 SMART SM00642 171 578 1.8E-8 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMK58_08870 6a3dd12578d6512a412f48febbd3a907 716 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 14 709 0.0 T 11-10-2018 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 AMK58_08870 6a3dd12578d6512a412f48febbd3a907 716 SUPERFAMILY SSF51011 599 709 1.01E-21 T 11-10-2018 AMK58_08870 6a3dd12578d6512a412f48febbd3a907 716 Pfam PF00128 Alpha amylase, catalytic domain 201 285 6.8E-10 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMK58_08870 6a3dd12578d6512a412f48febbd3a907 716 Gene3D G3DSA:2.60.40.1180 598 710 1.1E-16 T 11-10-2018 IPR013780 Glycosyl hydrolase, all-beta AMK58_08870 6a3dd12578d6512a412f48febbd3a907 716 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 18 106 3.9E-20 T 11-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 AMK58_08870 6a3dd12578d6512a412f48febbd3a907 716 SUPERFAMILY SSF51445 148 586 9.39E-142 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily AMK58_08870 6a3dd12578d6512a412f48febbd3a907 716 Gene3D G3DSA:2.60.40.10 3 149 1.9E-51 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_08870 6a3dd12578d6512a412f48febbd3a907 716 Gene3D G3DSA:3.20.20.80 150 592 2.7E-182 T 11-10-2018 AMK58_08870 6a3dd12578d6512a412f48febbd3a907 716 SUPERFAMILY SSF81296 13 160 1.35E-48 T 11-10-2018 IPR014756 Immunoglobulin E-set AMK58_22915 7675f21aaf5019a3debfa3cfc21efea7 591 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 520 1.2E-134 T 11-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 AMK58_22915 7675f21aaf5019a3debfa3cfc21efea7 591 Pfam PF13537 Glutamine amidotransferase domain 47 167 1.8E-43 T 11-10-2018 IPR017932 Glutamine amidotransferase type 2 domain AMK58_22915 7675f21aaf5019a3debfa3cfc21efea7 591 Pfam PF00733 Asparagine synthase 245 587 7.7E-91 T 11-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 AMK58_22915 7675f21aaf5019a3debfa3cfc21efea7 591 PIRSF PIRSF001589 1 591 5.7E-219 T 11-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 AMK58_22915 7675f21aaf5019a3debfa3cfc21efea7 591 Gene3D G3DSA:3.60.20.10 4 187 2.7E-58 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMK58_22915 7675f21aaf5019a3debfa3cfc21efea7 591 TIGRFAM TIGR03104 trio_amidotrans: asparagine synthase family amidotransferase 1 589 0.0 T 11-10-2018 IPR017535 Asparagine synthase family amidotransferase AMK58_22915 7675f21aaf5019a3debfa3cfc21efea7 591 SUPERFAMILY SSF52402 236 567 2.87E-80 T 11-10-2018 AMK58_22915 7675f21aaf5019a3debfa3cfc21efea7 591 SUPERFAMILY SSF56235 1 224 6.86E-61 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMK58_20535 275217a0f1b03bb67e249da233001b9e 828 Gene3D G3DSA:2.60.40.2030 671 795 1.1E-27 T 11-10-2018 IPR038081 CalX-like domain superfamily AMK58_20535 275217a0f1b03bb67e249da233001b9e 828 Pfam PF03160 Calx-beta domain 684 753 6.9E-19 T 11-10-2018 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 AMK58_20535 275217a0f1b03bb67e249da233001b9e 828 SMART SM00237 656 753 2.5E-11 T 11-10-2018 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 AMK58_20535 275217a0f1b03bb67e249da233001b9e 828 Gene3D G3DSA:3.20.20.80 312 669 3.3E-109 T 11-10-2018 AMK58_20535 275217a0f1b03bb67e249da233001b9e 828 SUPERFAMILY SSF141072 682 775 6.28E-27 T 11-10-2018 IPR038081 CalX-like domain superfamily AMK58_20535 275217a0f1b03bb67e249da233001b9e 828 SUPERFAMILY SSF51445 314 666 1.27E-77 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily AMK58_20535 275217a0f1b03bb67e249da233001b9e 828 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 326 644 1.1E-53 T 11-10-2018 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 AMK58_20535 275217a0f1b03bb67e249da233001b9e 828 Pfam PF16841 Ca-dependent carbohydrate-binding module xylan-binding 149 239 2.4E-28 T 11-10-2018 IPR031768 Carbohydrate binding module, xylan-binding domain MetaCyc: PWY-6717|MetaCyc: PWY-6784 AMK58_20535 275217a0f1b03bb67e249da233001b9e 828 Pfam PF16841 Ca-dependent carbohydrate-binding module xylan-binding 12 103 4.9E-30 T 11-10-2018 IPR031768 Carbohydrate binding module, xylan-binding domain MetaCyc: PWY-6717|MetaCyc: PWY-6784 AMK58_20535 275217a0f1b03bb67e249da233001b9e 828 ProSitePatterns PS00659 Glycosyl hydrolases family 5 signature. 468 477 - T 11-10-2018 IPR018087 Glycoside hydrolase, family 5, conserved site GO:0004553|GO:0005975 AMK58_20535 275217a0f1b03bb67e249da233001b9e 828 Gene3D G3DSA:2.60.60.40 10 131 1.3E-5 T 11-10-2018 AMK58_20535 275217a0f1b03bb67e249da233001b9e 828 Gene3D G3DSA:2.60.60.40 146 260 2.6E-7 T 11-10-2018 AMK58_29225 8be52ae90880a6d4ddaeaf9216c458e0 356 Gene3D G3DSA:3.90.25.10 214 345 1.7E-63 T 11-10-2018 AMK58_29225 8be52ae90880a6d4ddaeaf9216c458e0 356 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 278 1.2E-36 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMK58_29225 8be52ae90880a6d4ddaeaf9216c458e0 356 SUPERFAMILY SSF51735 3 346 1.87E-62 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_29225 8be52ae90880a6d4ddaeaf9216c458e0 356 Gene3D G3DSA:3.40.50.720 4 278 1.7E-63 T 11-10-2018 AMK58_23060 0d74c51430ac022cb6330d4f1a4f6fe2 339 Gene3D G3DSA:3.90.25.10 177 308 7.1E-119 T 11-10-2018 AMK58_23060 0d74c51430ac022cb6330d4f1a4f6fe2 339 Gene3D G3DSA:3.40.50.720 7 254 7.1E-119 T 11-10-2018 AMK58_23060 0d74c51430ac022cb6330d4f1a4f6fe2 339 Pfam PF01370 NAD dependent epimerase/dehydratase family 7 254 8.9E-54 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMK58_23060 0d74c51430ac022cb6330d4f1a4f6fe2 339 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 7 328 2.5E-122 T 11-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 AMK58_23060 0d74c51430ac022cb6330d4f1a4f6fe2 339 SUPERFAMILY SSF51735 1 329 2.06E-93 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_21890 784fab250caabc024f29ac4bf34577f4 616 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 34 160 8.2E-26 T 11-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ AMK58_21890 784fab250caabc024f29ac4bf34577f4 616 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 210 611 3.6E-86 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 AMK58_21890 784fab250caabc024f29ac4bf34577f4 616 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 201 609 1.5E-95 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit AMK58_01970 d0c130afedd0b7fe357bd703240b64bb 174 Pfam PF14346 Domain of unknown function (DUF4398) 26 118 4.4E-22 T 11-10-2018 IPR025511 Domain of unknown function DUF4398 AMK58_01970 d0c130afedd0b7fe357bd703240b64bb 174 Gene3D G3DSA:1.20.1270.390 34 122 2.7E-18 T 11-10-2018 AMK58_18945 fc76d40a03c39bcc8a8f209433aaa7bd 459 SUPERFAMILY SSF46689 363 452 1.94E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_18945 fc76d40a03c39bcc8a8f209433aaa7bd 459 Gene3D G3DSA:3.40.50.2300 9 144 2.1E-36 T 11-10-2018 AMK58_18945 fc76d40a03c39bcc8a8f209433aaa7bd 459 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 365 374 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site AMK58_18945 fc76d40a03c39bcc8a8f209433aaa7bd 459 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 238 253 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AMK58_18945 fc76d40a03c39bcc8a8f209433aaa7bd 459 Gene3D G3DSA:3.40.50.300 145 322 5.9E-61 T 11-10-2018 AMK58_18945 fc76d40a03c39bcc8a8f209433aaa7bd 459 Pfam PF00158 Sigma-54 interaction domain 152 318 4.7E-67 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AMK58_18945 fc76d40a03c39bcc8a8f209433aaa7bd 459 Gene3D G3DSA:1.10.8.60 323 391 4.0E-19 T 11-10-2018 AMK58_18945 fc76d40a03c39bcc8a8f209433aaa7bd 459 Pfam PF00072 Response regulator receiver domain 12 120 1.5E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_18945 fc76d40a03c39bcc8a8f209433aaa7bd 459 Pfam PF02954 Bacterial regulatory protein, Fis family 411 450 9.6E-7 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMK58_18945 fc76d40a03c39bcc8a8f209433aaa7bd 459 SUPERFAMILY SSF52172 9 195 5.27E-41 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_18945 fc76d40a03c39bcc8a8f209433aaa7bd 459 SMART SM00382 172 315 2.3E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_18945 fc76d40a03c39bcc8a8f209433aaa7bd 459 SMART SM00448 10 121 9.8E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_18945 fc76d40a03c39bcc8a8f209433aaa7bd 459 Gene3D G3DSA:1.10.10.60 402 455 1.2E-11 T 11-10-2018 AMK58_18945 fc76d40a03c39bcc8a8f209433aaa7bd 459 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 176 189 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AMK58_18945 fc76d40a03c39bcc8a8f209433aaa7bd 459 SUPERFAMILY SSF52540 151 381 5.12E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_20080 b7fdc27f423ce8c27fdfbea3b73680cf 337 Gene3D G3DSA:3.90.1200.10 114 296 3.4E-6 T 11-10-2018 AMK58_20080 b7fdc27f423ce8c27fdfbea3b73680cf 337 SUPERFAMILY SSF56112 37 297 4.54E-19 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily AMK58_20580 49abb83543c3e3cc03214abc6bc995f6 519 Gene3D G3DSA:3.40.50.12780 1 418 5.0E-124 T 11-10-2018 AMK58_20580 49abb83543c3e3cc03214abc6bc995f6 519 SUPERFAMILY SSF56801 4 518 7.98E-159 T 11-10-2018 AMK58_20580 49abb83543c3e3cc03214abc6bc995f6 519 PRINTS PR00154 AMP-binding signature 168 179 5.0E-5 T 11-10-2018 IPR020459 AMP-binding AMK58_20580 49abb83543c3e3cc03214abc6bc995f6 519 PRINTS PR00154 AMP-binding signature 180 188 5.0E-5 T 11-10-2018 IPR020459 AMP-binding AMK58_20580 49abb83543c3e3cc03214abc6bc995f6 519 Pfam PF13193 AMP-binding enzyme C-terminal domain 434 509 8.9E-20 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMK58_20580 49abb83543c3e3cc03214abc6bc995f6 519 Gene3D G3DSA:3.30.300.30 420 519 1.5E-28 T 11-10-2018 AMK58_20580 49abb83543c3e3cc03214abc6bc995f6 519 ProSitePatterns PS00455 Putative AMP-binding domain signature. 173 184 - T 11-10-2018 IPR020845 AMP-binding, conserved site AMK58_20580 49abb83543c3e3cc03214abc6bc995f6 519 Pfam PF00501 AMP-binding enzyme 10 426 1.2E-112 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMK58_02360 23c51fcaaef9957029227e55cc3fe94f 396 SMART SM00331 169 392 0.0019 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AMK58_02360 23c51fcaaef9957029227e55cc3fe94f 396 SUPERFAMILY SSF52172 8 154 3.42E-40 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_02360 23c51fcaaef9957029227e55cc3fe94f 396 SMART SM00448 8 122 2.9E-36 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_02360 23c51fcaaef9957029227e55cc3fe94f 396 Gene3D G3DSA:3.60.40.10 136 391 2.9E-33 T 11-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AMK58_02360 23c51fcaaef9957029227e55cc3fe94f 396 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 196 390 1.3E-21 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AMK58_02360 23c51fcaaef9957029227e55cc3fe94f 396 Pfam PF00072 Response regulator receiver domain 10 123 9.6E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_02360 23c51fcaaef9957029227e55cc3fe94f 396 Gene3D G3DSA:3.40.50.2300 4 135 1.8E-37 T 11-10-2018 AMK58_22350 dd2bff73db8e169d26d21f5b221fb54d 125 Pfam PF01329 Pterin 4 alpha carbinolamine dehydratase 9 97 9.8E-26 T 11-10-2018 IPR001533 Pterin 4 alpha carbinolamine dehydratase GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 AMK58_22350 dd2bff73db8e169d26d21f5b221fb54d 125 Gene3D G3DSA:3.30.1360.20 8 106 1.4E-25 T 11-10-2018 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 AMK58_22350 dd2bff73db8e169d26d21f5b221fb54d 125 SUPERFAMILY SSF55248 11 100 1.83E-26 T 11-10-2018 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 AMK58_12675 c49b0d1807598b68284a0d96f61ace47 870 Gene3D G3DSA:1.10.287.130 321 407 2.1E-27 T 11-10-2018 AMK58_12675 c49b0d1807598b68284a0d96f61ace47 870 SUPERFAMILY SSF55874 398 565 1.06E-44 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_12675 c49b0d1807598b68284a0d96f61ace47 870 SMART SM00388 344 409 5.3E-22 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_12675 c49b0d1807598b68284a0d96f61ace47 870 Gene3D G3DSA:3.30.565.10 408 569 4.8E-49 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_12675 c49b0d1807598b68284a0d96f61ace47 870 SUPERFAMILY SSF55785 193 322 1.19E-19 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_12675 c49b0d1807598b68284a0d96f61ace47 870 SMART SM00387 456 568 4.4E-38 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_12675 c49b0d1807598b68284a0d96f61ace47 870 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 456 566 2.1E-29 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_12675 c49b0d1807598b68284a0d96f61ace47 870 SUPERFAMILY SSF47226 745 848 9.57E-11 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMK58_12675 c49b0d1807598b68284a0d96f61ace47 870 SUPERFAMILY SSF52172 589 709 2.99E-35 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_12675 c49b0d1807598b68284a0d96f61ace47 870 SUPERFAMILY SSF47384 329 410 5.69E-20 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_12675 c49b0d1807598b68284a0d96f61ace47 870 Pfam PF07694 5TMR of 5TMR-LYT 40 189 7.3E-22 T 11-10-2018 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 AMK58_12675 c49b0d1807598b68284a0d96f61ace47 870 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 204 331 2.4E-8 T 11-10-2018 IPR000014 PAS domain AMK58_12675 c49b0d1807598b68284a0d96f61ace47 870 Pfam PF00512 His Kinase A (phospho-acceptor) domain 344 409 4.6E-18 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_12675 c49b0d1807598b68284a0d96f61ace47 870 SMART SM00448 590 704 7.7E-35 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_12675 c49b0d1807598b68284a0d96f61ace47 870 Gene3D G3DSA:3.40.50.2300 584 716 2.2E-36 T 11-10-2018 AMK58_12675 c49b0d1807598b68284a0d96f61ace47 870 PRINTS PR00344 Bacterial sensor protein C-terminal signature 515 525 1.8E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_12675 c49b0d1807598b68284a0d96f61ace47 870 PRINTS PR00344 Bacterial sensor protein C-terminal signature 552 565 1.8E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_12675 c49b0d1807598b68284a0d96f61ace47 870 PRINTS PR00344 Bacterial sensor protein C-terminal signature 528 546 1.8E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_12675 c49b0d1807598b68284a0d96f61ace47 870 PRINTS PR00344 Bacterial sensor protein C-terminal signature 497 511 1.8E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_12675 c49b0d1807598b68284a0d96f61ace47 870 Gene3D G3DSA:1.20.120.160 742 851 1.8E-8 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMK58_12675 c49b0d1807598b68284a0d96f61ace47 870 Gene3D G3DSA:3.30.450.20 204 320 4.2E-26 T 11-10-2018 AMK58_12675 c49b0d1807598b68284a0d96f61ace47 870 Pfam PF00072 Response regulator receiver domain 592 704 1.6E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_12675 c49b0d1807598b68284a0d96f61ace47 870 Pfam PF08447 PAS fold 234 316 7.2E-16 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 AMK58_22840 cf129df428cab6b0b180d931bd2d9bd9 281 Gene3D G3DSA:3.30.1150.10 117 281 5.5E-27 T 11-10-2018 AMK58_22840 cf129df428cab6b0b180d931bd2d9bd9 281 SUPERFAMILY SSF74653 197 270 3.92E-15 T 11-10-2018 AMK58_22840 cf129df428cab6b0b180d931bd2d9bd9 281 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 202 278 2.6E-16 T 11-10-2018 IPR037682 TonB, C-terminal GO:0055085 AMK58_22840 cf129df428cab6b0b180d931bd2d9bd9 281 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 203 278 1.7E-17 T 11-10-2018 IPR006260 TonB/TolA, C-terminal AMK58_17670 2b4c6bbf8327e8375299ab3d20773921 662 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 12 657 42.529 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMK58_17670 2b4c6bbf8327e8375299ab3d20773921 662 TIGRFAM TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit 13 652 2.0E-238 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMK58_17670 2b4c6bbf8327e8375299ab3d20773921 662 Pfam PF01751 Toprim domain 436 540 2.9E-17 T 11-10-2018 IPR006171 TOPRIM domain AMK58_17670 2b4c6bbf8327e8375299ab3d20773921 662 SUPERFAMILY SSF55874 15 217 2.62E-60 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_17670 2b4c6bbf8327e8375299ab3d20773921 662 Gene3D G3DSA:3.40.50.670 416 662 2.1E-90 T 11-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMK58_17670 2b4c6bbf8327e8375299ab3d20773921 662 Gene3D G3DSA:3.30.565.10 12 219 8.7E-75 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_17670 2b4c6bbf8327e8375299ab3d20773921 662 SMART SM00433 44 653 5.0E-281 T 11-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMK58_17670 2b4c6bbf8327e8375299ab3d20773921 662 PRINTS PR01159 DNA gyrase subunit B signature 604 616 1.0E-14 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMK58_17670 2b4c6bbf8327e8375299ab3d20773921 662 PRINTS PR01159 DNA gyrase subunit B signature 392 412 1.0E-14 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMK58_17670 2b4c6bbf8327e8375299ab3d20773921 662 PRINTS PR01159 DNA gyrase subunit B signature 15 25 1.0E-14 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMK58_17670 2b4c6bbf8327e8375299ab3d20773921 662 PRINTS PR01159 DNA gyrase subunit B signature 487 496 1.0E-14 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMK58_17670 2b4c6bbf8327e8375299ab3d20773921 662 PRINTS PR01159 DNA gyrase subunit B signature 238 260 1.0E-14 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMK58_17670 2b4c6bbf8327e8375299ab3d20773921 662 PRINTS PR01159 DNA gyrase subunit B signature 378 392 1.0E-14 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMK58_17670 2b4c6bbf8327e8375299ab3d20773921 662 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 41 184 3.2E-21 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_17670 2b4c6bbf8327e8375299ab3d20773921 662 SUPERFAMILY SSF54211 239 409 3.03E-41 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMK58_17670 2b4c6bbf8327e8375299ab3d20773921 662 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 579 649 5.0E-23 T 11-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMK58_17670 2b4c6bbf8327e8375299ab3d20773921 662 PRINTS PR00418 DNA topoisomerase II family signature 521 538 9.7E-63 T 11-10-2018 AMK58_17670 2b4c6bbf8327e8375299ab3d20773921 662 PRINTS PR00418 DNA topoisomerase II family signature 44 59 9.7E-63 T 11-10-2018 AMK58_17670 2b4c6bbf8327e8375299ab3d20773921 662 PRINTS PR00418 DNA topoisomerase II family signature 503 519 9.7E-63 T 11-10-2018 AMK58_17670 2b4c6bbf8327e8375299ab3d20773921 662 PRINTS PR00418 DNA topoisomerase II family signature 79 92 9.7E-63 T 11-10-2018 AMK58_17670 2b4c6bbf8327e8375299ab3d20773921 662 PRINTS PR00418 DNA topoisomerase II family signature 437 451 9.7E-63 T 11-10-2018 AMK58_17670 2b4c6bbf8327e8375299ab3d20773921 662 PRINTS PR00418 DNA topoisomerase II family signature 583 599 9.7E-63 T 11-10-2018 AMK58_17670 2b4c6bbf8327e8375299ab3d20773921 662 PRINTS PR00418 DNA topoisomerase II family signature 288 301 9.7E-63 T 11-10-2018 AMK58_17670 2b4c6bbf8327e8375299ab3d20773921 662 PRINTS PR00418 DNA topoisomerase II family signature 541 553 9.7E-63 T 11-10-2018 AMK58_17670 2b4c6bbf8327e8375299ab3d20773921 662 PRINTS PR00418 DNA topoisomerase II family signature 123 137 9.7E-63 T 11-10-2018 AMK58_17670 2b4c6bbf8327e8375299ab3d20773921 662 SMART SM00387 40 185 6.6E-28 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_17670 2b4c6bbf8327e8375299ab3d20773921 662 Pfam PF00204 DNA gyrase B 239 408 5.7E-41 T 11-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMK58_17670 2b4c6bbf8327e8375299ab3d20773921 662 Gene3D G3DSA:3.30.230.10 239 413 2.0E-46 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMK58_17670 2b4c6bbf8327e8375299ab3d20773921 662 SUPERFAMILY SSF56719 411 659 5.75E-78 T 11-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AMK58_17670 2b4c6bbf8327e8375299ab3d20773921 662 ProSitePatterns PS00177 DNA topoisomerase II signature. 439 447 - T 11-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMK58_10610 cdcf10704a734158e3689f8a90996dd6 383 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 50 135 2.8E-11 T 11-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMK58_10610 cdcf10704a734158e3689f8a90996dd6 383 SUPERFAMILY SSF51735 50 173 1.73E-30 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_10610 cdcf10704a734158e3689f8a90996dd6 383 SUPERFAMILY SSF55347 146 346 2.62E-34 T 11-10-2018 AMK58_10610 cdcf10704a734158e3689f8a90996dd6 383 Gene3D G3DSA:3.30.360.10 141 381 1.6E-71 T 11-10-2018 AMK58_10610 cdcf10704a734158e3689f8a90996dd6 383 Gene3D G3DSA:3.40.50.720 1 140 1.4E-40 T 11-10-2018 AMK58_07425 03cf3b27352ef32fc5ccad41fd3fef99 148 Gene3D G3DSA:2.40.280.10 1 124 2.9E-44 T 11-10-2018 IPR023620 Small protein B AMK58_07425 03cf3b27352ef32fc5ccad41fd3fef99 148 Pfam PF01668 SmpB protein 3 145 3.3E-57 T 11-10-2018 IPR000037 SsrA-binding protein GO:0003723 AMK58_07425 03cf3b27352ef32fc5ccad41fd3fef99 148 ProSitePatterns PS01317 SsrA-binding protein. 20 32 - T 11-10-2018 IPR020081 SsrA-binding protein, conserved site AMK58_07425 03cf3b27352ef32fc5ccad41fd3fef99 148 Hamap MF_00023 SsrA-binding protein [smpB]. 1 148 68.717 T 11-10-2018 IPR000037 SsrA-binding protein GO:0003723 AMK58_07425 03cf3b27352ef32fc5ccad41fd3fef99 148 TIGRFAM TIGR00086 smpB: SsrA-binding protein 2 144 1.1E-52 T 11-10-2018 IPR000037 SsrA-binding protein GO:0003723 AMK58_07425 03cf3b27352ef32fc5ccad41fd3fef99 148 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 3 127 2.0E-40 T 11-10-2018 IPR000037 SsrA-binding protein GO:0003723 AMK58_07425 03cf3b27352ef32fc5ccad41fd3fef99 148 SUPERFAMILY SSF74982 2 127 2.62E-46 T 11-10-2018 IPR023620 Small protein B AMK58_17565 0f46f98c846fa7d2997ec19190362fac 82 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 6 66 5.0E-33 T 11-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 AMK58_17565 0f46f98c846fa7d2997ec19190362fac 82 SUPERFAMILY SSF50182 7 72 5.65E-25 T 11-10-2018 IPR010920 LSM domain superfamily AMK58_17565 0f46f98c846fa7d2997ec19190362fac 82 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 1 66 29.252 T 11-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 AMK58_17565 0f46f98c846fa7d2997ec19190362fac 82 Gene3D G3DSA:2.30.30.100 1 78 3.0E-34 T 11-10-2018 AMK58_17565 0f46f98c846fa7d2997ec19190362fac 82 Pfam PF17209 Hfq protein 8 70 3.0E-33 T 11-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 AMK58_20490 2d741e503fbc7c2a2eb717ba84615191 65 Pfam PF07862 Nif11 domain 5 51 4.7E-8 T 11-10-2018 IPR012903 Nif11 domain AMK58_01255 67b1e67d95d123c1a2cb2420a150fb98 66 Gene3D G3DSA:2.40.50.530 1 64 4.5E-21 T 11-10-2018 AMK58_01255 67b1e67d95d123c1a2cb2420a150fb98 66 SUPERFAMILY SSF143034 2 60 2.22E-19 T 11-10-2018 IPR037229 Ribosomal protein L35 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_01255 67b1e67d95d123c1a2cb2420a150fb98 66 PRINTS PR00064 Ribosomal protein L35 signature 3 20 2.9E-13 T 11-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AMK58_01255 67b1e67d95d123c1a2cb2420a150fb98 66 PRINTS PR00064 Ribosomal protein L35 signature 21 35 2.9E-13 T 11-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AMK58_01255 67b1e67d95d123c1a2cb2420a150fb98 66 PRINTS PR00064 Ribosomal protein L35 signature 36 54 2.9E-13 T 11-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AMK58_01255 67b1e67d95d123c1a2cb2420a150fb98 66 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 59 1.8E-20 T 11-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AMK58_01255 67b1e67d95d123c1a2cb2420a150fb98 66 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 11-10-2018 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_01255 67b1e67d95d123c1a2cb2420a150fb98 66 Pfam PF01632 Ribosomal protein L35 2 59 1.7E-21 T 11-10-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_01255 67b1e67d95d123c1a2cb2420a150fb98 66 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 15.604 T 11-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AMK58_11815 03a22917a8a0326baf6f76fbb296be5b 481 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 54 77 - T 11-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AMK58_11815 03a22917a8a0326baf6f76fbb296be5b 481 SUPERFAMILY SSF53613 16 321 4.05E-56 T 11-10-2018 IPR029056 Ribokinase-like AMK58_11815 03a22917a8a0326baf6f76fbb296be5b 481 Gene3D G3DSA:3.40.50.620 328 481 1.5E-38 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_11815 03a22917a8a0326baf6f76fbb296be5b 481 TIGRFAM TIGR02199 rfaE_dom_II: bifunctional protein RfaE, domain II 340 480 1.2E-63 T 11-10-2018 IPR011914 RfaE bifunctional protein, domain II GO:0005975|GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 AMK58_11815 03a22917a8a0326baf6f76fbb296be5b 481 Pfam PF01467 Cytidylyltransferase-like 353 445 1.3E-13 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AMK58_11815 03a22917a8a0326baf6f76fbb296be5b 481 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 350 415 1.5E-14 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AMK58_11815 03a22917a8a0326baf6f76fbb296be5b 481 Hamap MF_01603 Bifunctional protein HldE [hldE]. 7 481 41.858 T 11-10-2018 IPR023030 Bifunctional protein HldE GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 AMK58_11815 03a22917a8a0326baf6f76fbb296be5b 481 SUPERFAMILY SSF52374 348 479 4.79E-23 T 11-10-2018 AMK58_11815 03a22917a8a0326baf6f76fbb296be5b 481 Pfam PF00294 pfkB family carbohydrate kinase 14 307 7.3E-37 T 11-10-2018 IPR011611 Carbohydrate kinase PfkB AMK58_11815 03a22917a8a0326baf6f76fbb296be5b 481 TIGRFAM TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I 9 318 3.2E-112 T 11-10-2018 IPR011913 RfaE bifunctional protein, domain I GO:0005975|GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 AMK58_11815 03a22917a8a0326baf6f76fbb296be5b 481 Gene3D G3DSA:3.40.1190.20 5 316 9.7E-103 T 11-10-2018 IPR029056 Ribokinase-like AMK58_01245 4f255947a3bfe97e5223cfb11f5093ed 300 SUPERFAMILY SSF88946 16 118 2.09E-37 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMK58_01245 4f255947a3bfe97e5223cfb11f5093ed 300 Pfam PF04542 Sigma-70 region 2 50 119 8.6E-20 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMK58_01245 4f255947a3bfe97e5223cfb11f5093ed 300 Gene3D G3DSA:1.20.140.160 136 289 3.8E-20 T 11-10-2018 AMK58_01245 4f255947a3bfe97e5223cfb11f5093ed 300 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 256 282 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_01245 4f255947a3bfe97e5223cfb11f5093ed 300 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 46 285 1.1E-33 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMK58_01245 4f255947a3bfe97e5223cfb11f5093ed 300 Gene3D G3DSA:1.10.601.10 7 122 1.5E-31 T 11-10-2018 AMK58_01245 4f255947a3bfe97e5223cfb11f5093ed 300 PRINTS PR00046 Major sigma-70 factor signature 237 249 9.9E-24 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_01245 4f255947a3bfe97e5223cfb11f5093ed 300 PRINTS PR00046 Major sigma-70 factor signature 271 282 9.9E-24 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_01245 4f255947a3bfe97e5223cfb11f5093ed 300 PRINTS PR00046 Major sigma-70 factor signature 98 106 9.9E-24 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_01245 4f255947a3bfe97e5223cfb11f5093ed 300 PRINTS PR00046 Major sigma-70 factor signature 74 87 9.9E-24 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_01245 4f255947a3bfe97e5223cfb11f5093ed 300 PRINTS PR00046 Major sigma-70 factor signature 256 271 9.9E-24 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_01245 4f255947a3bfe97e5223cfb11f5093ed 300 SUPERFAMILY SSF88659 193 288 4.67E-22 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMK58_01245 4f255947a3bfe97e5223cfb11f5093ed 300 PIRSF PIRSF000770 16 292 1.8E-33 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_01245 4f255947a3bfe97e5223cfb11f5093ed 300 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 74 87 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_01245 4f255947a3bfe97e5223cfb11f5093ed 300 Pfam PF04545 Sigma-70, region 4 233 284 2.1E-17 T 11-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 AMK58_25580 08e1b1a630ad2c5ce7b31c9d8413450a 500 SUPERFAMILY SSF53720 17 485 6.54E-132 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMK58_25580 08e1b1a630ad2c5ce7b31c9d8413450a 500 Pfam PF00171 Aldehyde dehydrogenase family 21 479 2.3E-123 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMK58_25580 08e1b1a630ad2c5ce7b31c9d8413450a 500 Gene3D G3DSA:3.40.309.10 255 449 6.4E-136 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMK58_25580 08e1b1a630ad2c5ce7b31c9d8413450a 500 Gene3D G3DSA:3.40.605.10 21 474 6.4E-136 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMK58_25580 08e1b1a630ad2c5ce7b31c9d8413450a 500 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 251 258 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AMK58_28315 7962c726fee78735ab96d49205b389b5 289 Pfam PF07183 Protein of unknown function (DUF1403) 187 283 9.4E-6 T 11-10-2018 IPR009843 Protein of unknown function DUF1403 AMK58_28315 7962c726fee78735ab96d49205b389b5 289 Gene3D G3DSA:1.10.10.10 191 283 2.1E-5 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_28315 7962c726fee78735ab96d49205b389b5 289 Pfam PF11972 HTH DNA binding domain 229 283 1.8E-9 T 11-10-2018 IPR021068 HTH DNA binding domain AMK58_28315 7962c726fee78735ab96d49205b389b5 289 SUPERFAMILY SSF46785 232 280 8.92E-6 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_22535 bb10a83488c0ee4e25c99f4e011b84a1 271 Pfam PF00378 Enoyl-CoA hydratase/isomerase 20 270 4.1E-38 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMK58_22535 bb10a83488c0ee4e25c99f4e011b84a1 271 SUPERFAMILY SSF52096 13 270 6.88E-63 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMK58_22535 bb10a83488c0ee4e25c99f4e011b84a1 271 Gene3D G3DSA:3.90.226.10 10 271 5.0E-62 T 11-10-2018 AMK58_22790 14e5060fea8b6dc87fc53ed1610ef483 245 Gene3D G3DSA:3.40.190.10 27 238 2.4E-48 T 11-10-2018 AMK58_22790 14e5060fea8b6dc87fc53ed1610ef483 245 SUPERFAMILY SSF53850 21 242 5.64E-47 T 11-10-2018 AMK58_22790 14e5060fea8b6dc87fc53ed1610ef483 245 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 26 240 2.2E-44 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMK58_22790 14e5060fea8b6dc87fc53ed1610ef483 245 Gene3D G3DSA:3.40.190.10 104 197 2.4E-48 T 11-10-2018 AMK58_22790 14e5060fea8b6dc87fc53ed1610ef483 245 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 41 54 - T 11-10-2018 IPR018313 Solute-binding protein family 3, conserved site AMK58_22790 14e5060fea8b6dc87fc53ed1610ef483 245 SMART SM00062 22 243 3.3E-39 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMK58_26840 ab77e84ef357fcf1347e834e46d18774 745 Gene3D G3DSA:2.170.130.10 70 182 9.4E-12 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily AMK58_26840 ab77e84ef357fcf1347e834e46d18774 745 Pfam PF00593 TonB dependent receptor 227 743 1.9E-25 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel AMK58_26840 ab77e84ef357fcf1347e834e46d18774 745 Pfam PF07715 TonB-dependent Receptor Plug Domain 86 174 1.2E-9 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain AMK58_26840 ab77e84ef357fcf1347e834e46d18774 745 SUPERFAMILY SSF56935 84 745 2.2E-79 T 11-10-2018 AMK58_26840 ab77e84ef357fcf1347e834e46d18774 745 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 728 745 - T 11-10-2018 IPR010917 TonB-dependent receptor, conserved site AMK58_12915 21f327fed7e6b5f2f7a49e642a4aece2 214 Pfam PF09867 Uncharacterized protein conserved in bacteria (DUF2094) 8 140 1.0E-42 T 11-10-2018 IPR017748 T6S-associated protein TagF AMK58_12915 21f327fed7e6b5f2f7a49e642a4aece2 214 TIGRFAM TIGR03373 VI_minor_4: type VI secretion-associated protein, BMA_A0400 family 8 140 4.3E-39 T 11-10-2018 IPR017748 T6S-associated protein TagF AMK58_12915 21f327fed7e6b5f2f7a49e642a4aece2 214 PIRSF PIRSF029287 2 207 9.4E-44 T 11-10-2018 IPR017748 T6S-associated protein TagF AMK58_12915 21f327fed7e6b5f2f7a49e642a4aece2 214 Gene3D G3DSA:3.40.1730.10 5 210 3.5E-55 T 11-10-2018 IPR038225 T6S-associated protein TagF superfamily AMK58_16595 d973b862c0b962190e463c56b30c5222 480 SUPERFAMILY SSF51735 19 182 2.63E-44 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_16595 d973b862c0b962190e463c56b30c5222 480 SUPERFAMILY SSF48179 190 479 2.04E-112 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMK58_16595 d973b862c0b962190e463c56b30c5222 480 SMART SM01350 192 478 7.6E-174 T 11-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AMK58_16595 d973b862c0b962190e463c56b30c5222 480 TIGRFAM TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating) 20 478 5.0E-173 T 11-10-2018 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AMK58_16595 d973b862c0b962190e463c56b30c5222 480 Gene3D G3DSA:1.10.1040.10 194 445 4.2E-94 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMK58_16595 d973b862c0b962190e463c56b30c5222 480 ProSitePatterns PS00461 6-phosphogluconate dehydrogenase signature. 267 279 - T 11-10-2018 IPR006184 6-phosphogluconate-binding site GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AMK58_16595 d973b862c0b962190e463c56b30c5222 480 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 19 42 3.4E-72 T 11-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AMK58_16595 d973b862c0b962190e463c56b30c5222 480 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 132 157 3.4E-72 T 11-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AMK58_16595 d973b862c0b962190e463c56b30c5222 480 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 263 290 3.4E-72 T 11-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AMK58_16595 d973b862c0b962190e463c56b30c5222 480 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 181 209 3.4E-72 T 11-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AMK58_16595 d973b862c0b962190e463c56b30c5222 480 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 79 108 3.4E-72 T 11-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AMK58_16595 d973b862c0b962190e463c56b30c5222 480 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 367 389 3.4E-72 T 11-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AMK58_16595 d973b862c0b962190e463c56b30c5222 480 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 192 477 2.4E-114 T 11-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AMK58_16595 d973b862c0b962190e463c56b30c5222 480 Gene3D G3DSA:1.20.5.320 447 479 2.4E-17 T 11-10-2018 AMK58_16595 d973b862c0b962190e463c56b30c5222 480 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 20 175 1.1E-43 T 11-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 AMK58_16595 d973b862c0b962190e463c56b30c5222 480 Gene3D G3DSA:3.40.50.720 13 193 1.1E-50 T 11-10-2018 AMK58_16595 d973b862c0b962190e463c56b30c5222 480 PIRSF PIRSF000109 13 480 1.0E-176 T 11-10-2018 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AMK58_12470 c7c79a7e997c14144c89dc5e2b0fac40 318 Gene3D G3DSA:3.90.226.10 1 315 3.0E-112 T 11-10-2018 AMK58_12470 c7c79a7e997c14144c89dc5e2b0fac40 318 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 2 314 1.7E-124 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMK58_12470 c7c79a7e997c14144c89dc5e2b0fac40 318 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 152 165 2.8E-39 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMK58_12470 c7c79a7e997c14144c89dc5e2b0fac40 318 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 112 130 2.8E-39 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMK58_12470 c7c79a7e997c14144c89dc5e2b0fac40 318 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 87 98 2.8E-39 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMK58_12470 c7c79a7e997c14144c89dc5e2b0fac40 318 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 168 181 2.8E-39 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMK58_12470 c7c79a7e997c14144c89dc5e2b0fac40 318 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 196 205 2.8E-39 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMK58_12470 c7c79a7e997c14144c89dc5e2b0fac40 318 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 133 149 2.8E-39 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMK58_12470 c7c79a7e997c14144c89dc5e2b0fac40 318 SUPERFAMILY SSF52096 4 314 2.34E-93 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMK58_12470 c7c79a7e997c14144c89dc5e2b0fac40 318 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 5 147 6.7E-60 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMK58_12470 c7c79a7e997c14144c89dc5e2b0fac40 318 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 4 315 47.4 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMK58_26385 bf2432195c006f9322d7bf5ae107769a 410 Pfam PF07559 Flagellar basal body protein FlaE 186 280 4.5E-9 T 11-10-2018 IPR011491 Flagellar hook protein FlgE AMK58_26385 bf2432195c006f9322d7bf5ae107769a 410 Pfam PF00460 Flagella basal body rod protein 7 37 1.1E-8 T 11-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 AMK58_26385 bf2432195c006f9322d7bf5ae107769a 410 SUPERFAMILY SSF117143 82 370 2.75E-56 T 11-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like AMK58_26385 bf2432195c006f9322d7bf5ae107769a 410 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 331 408 2.1E-16 T 11-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain AMK58_26385 bf2432195c006f9322d7bf5ae107769a 410 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 11-10-2018 IPR019776 Flagellar basal body rod protein, conserved site AMK58_26385 bf2432195c006f9322d7bf5ae107769a 410 Gene3D G3DSA:2.60.98.20 165 285 3.1E-8 T 11-10-2018 IPR037058 Flagellar hook protein FlgE superfamily AMK58_26385 bf2432195c006f9322d7bf5ae107769a 410 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 5 391 1.1E-84 T 11-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G AMK58_11055 00b83e4d6417d926e17ee13bb2c9548c 280 Gene3D G3DSA:3.40.50.300 14 254 3.0E-60 T 11-10-2018 AMK58_11055 00b83e4d6417d926e17ee13bb2c9548c 280 SUPERFAMILY SSF52540 17 252 6.97E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_11055 00b83e4d6417d926e17ee13bb2c9548c 280 Pfam PF00005 ABC transporter 35 182 1.2E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_11055 00b83e4d6417d926e17ee13bb2c9548c 280 SMART SM00382 44 233 1.8E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_11055 00b83e4d6417d926e17ee13bb2c9548c 280 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_11550 c7ac9d5f6a2adde00073775e940fae41 554 Gene3D G3DSA:3.60.110.10 2 253 6.5E-84 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMK58_11550 c7ac9d5f6a2adde00073775e940fae41 554 SUPERFAMILY SSF52402 259 535 1.7E-76 T 11-10-2018 AMK58_11550 c7ac9d5f6a2adde00073775e940fae41 554 PIRSF PIRSF006630 2 553 1.0E-183 T 11-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 AMK58_11550 c7ac9d5f6a2adde00073775e940fae41 554 TIGRFAM TIGR00552 nadE: NAD+ synthetase 276 533 4.0E-59 T 11-10-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 AMK58_11550 c7ac9d5f6a2adde00073775e940fae41 554 Gene3D G3DSA:3.40.50.620 268 552 3.9E-114 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_11550 c7ac9d5f6a2adde00073775e940fae41 554 Hamap MF_02090 Glutamine-dependent NAD(+) synthetase [nadE]. 5 552 28.821 T 11-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 AMK58_11550 c7ac9d5f6a2adde00073775e940fae41 554 Pfam PF02540 NAD synthase 270 527 2.7E-71 T 11-10-2018 IPR022310 NAD/GMP synthase AMK58_11550 c7ac9d5f6a2adde00073775e940fae41 554 SUPERFAMILY SSF56317 4 243 4.71E-62 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMK58_11550 c7ac9d5f6a2adde00073775e940fae41 554 Pfam PF00795 Carbon-nitrogen hydrolase 7 243 1.5E-29 T 11-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 AMK58_03110 73ff36b71ab1d0c30534d2b961583d8f 304 SUPERFAMILY SSF53300 98 205 1.07E-7 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMK58_03110 73ff36b71ab1d0c30534d2b961583d8f 304 Pfam PF13519 von Willebrand factor type A domain 98 202 9.5E-11 T 11-10-2018 IPR002035 von Willebrand factor, type A AMK58_03110 73ff36b71ab1d0c30534d2b961583d8f 304 Gene3D G3DSA:3.40.50.410 91 261 2.1E-16 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMK58_28115 0ef864e2ee70a66f0e9db954bc7ba0d9 439 SUPERFAMILY SSF50610 225 289 1.96E-8 T 11-10-2018 IPR009004 Transposase, Mu, C-terminal AMK58_28115 0ef864e2ee70a66f0e9db954bc7ba0d9 439 Pfam PF09299 Mu transposase, C-terminal 229 288 9.5E-14 T 11-10-2018 IPR015378 Transposase-like, Mu, C-terminal AMK58_28115 0ef864e2ee70a66f0e9db954bc7ba0d9 439 Pfam PF00665 Integrase core domain 9 145 3.6E-19 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMK58_28115 0ef864e2ee70a66f0e9db954bc7ba0d9 439 SUPERFAMILY SSF53098 6 204 1.34E-23 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMK58_28115 0ef864e2ee70a66f0e9db954bc7ba0d9 439 Gene3D G3DSA:3.30.420.10 8 220 5.3E-35 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMK58_03035 e17f5674d1ca3b4b4d8be90850c2b9fa 223 Pfam PF06347 Bacterial SH3 domain 167 219 2.0E-4 T 11-10-2018 IPR010466 Protein of unknown function DUF1058 AMK58_10600 a99a20e251f28f8b423039e73f5af15f 287 Pfam PF01261 Xylose isomerase-like TIM barrel 28 240 3.1E-29 T 11-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AMK58_10600 a99a20e251f28f8b423039e73f5af15f 287 SUPERFAMILY SSF51658 1 266 3.01E-50 T 11-10-2018 IPR036237 Xylose isomerase-like superfamily AMK58_10600 a99a20e251f28f8b423039e73f5af15f 287 Gene3D G3DSA:3.20.20.150 7 287 2.0E-66 T 11-10-2018 AMK58_13710 6135b65c390913a935bf5622c9685bf9 375 SUPERFAMILY SSF55073 215 367 2.12E-41 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_13710 6135b65c390913a935bf5622c9685bf9 375 Pfam PF00990 Diguanylate cyclase, GGDEF domain 210 364 1.3E-40 T 11-10-2018 IPR000160 GGDEF domain AMK58_13710 6135b65c390913a935bf5622c9685bf9 375 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 208 367 5.8E-46 T 11-10-2018 IPR000160 GGDEF domain AMK58_13710 6135b65c390913a935bf5622c9685bf9 375 SMART SM00267 200 368 2.0E-50 T 11-10-2018 IPR000160 GGDEF domain AMK58_13710 6135b65c390913a935bf5622c9685bf9 375 Gene3D G3DSA:3.30.70.270 203 368 4.2E-48 T 11-10-2018 AMK58_03480 e8c0510fe72b43e4c996438294f82cd7 246 SMART SM00382 31 214 4.2E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_03480 e8c0510fe72b43e4c996438294f82cd7 246 SUPERFAMILY SSF52540 4 225 5.8E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_03480 e8c0510fe72b43e4c996438294f82cd7 246 TIGRFAM TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system 5 241 1.3E-104 T 11-10-2018 IPR022467 ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system AMK58_03480 e8c0510fe72b43e4c996438294f82cd7 246 Gene3D G3DSA:3.40.50.300 3 244 1.2E-67 T 11-10-2018 AMK58_03480 e8c0510fe72b43e4c996438294f82cd7 246 Pfam PF00005 ABC transporter 22 165 2.1E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_16600 dc1c5f5a85a69fd6dd1dc4f9bf7e7b5c 335 SUPERFAMILY SSF53822 55 315 2.17E-54 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMK58_16600 dc1c5f5a85a69fd6dd1dc4f9bf7e7b5c 335 Gene3D G3DSA:1.10.260.40 1 55 3.8E-18 T 11-10-2018 AMK58_16600 dc1c5f5a85a69fd6dd1dc4f9bf7e7b5c 335 Gene3D G3DSA:3.40.50.2300 61 310 2.0E-65 T 11-10-2018 AMK58_16600 dc1c5f5a85a69fd6dd1dc4f9bf7e7b5c 335 Gene3D G3DSA:3.40.50.2300 160 292 2.0E-65 T 11-10-2018 AMK58_16600 dc1c5f5a85a69fd6dd1dc4f9bf7e7b5c 335 SUPERFAMILY SSF47413 1 56 4.78E-14 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMK58_16600 dc1c5f5a85a69fd6dd1dc4f9bf7e7b5c 335 SMART SM00354 1 68 2.5E-21 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMK58_16600 dc1c5f5a85a69fd6dd1dc4f9bf7e7b5c 335 Pfam PF00356 Bacterial regulatory proteins, lacI family 1 45 1.5E-14 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMK58_16600 dc1c5f5a85a69fd6dd1dc4f9bf7e7b5c 335 ProSitePatterns PS00356 LacI-type HTH domain signature. 1 19 - T 11-10-2018 AMK58_16600 dc1c5f5a85a69fd6dd1dc4f9bf7e7b5c 335 Pfam PF13377 Periplasmic binding protein-like domain 171 335 3.5E-29 T 11-10-2018 AMK58_28650 bf03c3ba7430b3000ab387464f705a55 718 SUPERFAMILY SSF52210 390 544 2.49E-37 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMK58_28650 bf03c3ba7430b3000ab387464f705a55 718 SUPERFAMILY SSF52210 553 700 1.24E-28 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMK58_28650 bf03c3ba7430b3000ab387464f705a55 718 Gene3D G3DSA:3.40.50.261 551 718 9.7E-37 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMK58_28650 bf03c3ba7430b3000ab387464f705a55 718 Gene3D G3DSA:3.40.50.720 260 388 7.2E-42 T 11-10-2018 AMK58_28650 bf03c3ba7430b3000ab387464f705a55 718 Pfam PF13380 CoA binding domain 271 392 1.7E-21 T 11-10-2018 IPR003781 CoA-binding GO:0048037 AMK58_28650 bf03c3ba7430b3000ab387464f705a55 718 Pfam PF13549 ATP-grasp domain 24 243 2.9E-76 T 11-10-2018 AMK58_28650 bf03c3ba7430b3000ab387464f705a55 718 SUPERFAMILY SSF56059 35 247 5.11E-41 T 11-10-2018 AMK58_28650 bf03c3ba7430b3000ab387464f705a55 718 Gene3D G3DSA:3.30.470.20 32 241 2.7E-77 T 11-10-2018 AMK58_28650 bf03c3ba7430b3000ab387464f705a55 718 SUPERFAMILY SSF51735 262 397 3.22E-34 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_28650 bf03c3ba7430b3000ab387464f705a55 718 SMART SM00881 266 361 2.1E-28 T 11-10-2018 IPR003781 CoA-binding GO:0048037 AMK58_28650 bf03c3ba7430b3000ab387464f705a55 718 Gene3D G3DSA:3.40.50.261 389 547 3.2E-52 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMK58_28650 bf03c3ba7430b3000ab387464f705a55 718 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 410 545 4.0E-47 T 11-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain AMK58_28650 bf03c3ba7430b3000ab387464f705a55 718 Gene3D G3DSA:3.30.1490.20 50 127 2.7E-77 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMK58_00070 44373e003eb602404a656e8b8a32cc45 933 SUPERFAMILY SSF81301 27 219 2.44E-34 T 11-10-2018 AMK58_00070 44373e003eb602404a656e8b8a32cc45 933 SUPERFAMILY SSF81593 245 352 3.92E-7 T 11-10-2018 AMK58_00070 44373e003eb602404a656e8b8a32cc45 933 Gene3D G3DSA:1.10.3090.10 402 689 1.4E-10 T 11-10-2018 AMK58_00070 44373e003eb602404a656e8b8a32cc45 933 SMART SM00471 502 649 7.6E-7 T 11-10-2018 IPR003607 HD/PDEase domain AMK58_00070 44373e003eb602404a656e8b8a32cc45 933 PIRSF PIRSF006288 42 933 0.0 T 11-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 AMK58_00070 44373e003eb602404a656e8b8a32cc45 933 Pfam PF01966 HD domain 507 637 4.0E-10 T 11-10-2018 IPR006674 HD domain AMK58_00070 44373e003eb602404a656e8b8a32cc45 933 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 52 933 292.929 T 11-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 AMK58_00070 44373e003eb602404a656e8b8a32cc45 933 Gene3D G3DSA:3.30.70.260 853 931 7.9E-8 T 11-10-2018 AMK58_00070 44373e003eb602404a656e8b8a32cc45 933 Pfam PF08335 GlnD PII-uridylyltransferase 225 363 3.4E-35 T 11-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 AMK58_00070 44373e003eb602404a656e8b8a32cc45 933 SUPERFAMILY SSF81891 408 649 2.55E-23 T 11-10-2018 AMK58_00070 44373e003eb602404a656e8b8a32cc45 933 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 67 928 9.4E-293 T 11-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 AMK58_00070 44373e003eb602404a656e8b8a32cc45 933 SUPERFAMILY SSF55021 744 799 4.16E-10 T 11-10-2018 AMK58_00070 44373e003eb602404a656e8b8a32cc45 933 SUPERFAMILY SSF55021 855 925 3.12E-12 T 11-10-2018 AMK58_00070 44373e003eb602404a656e8b8a32cc45 933 Pfam PF01909 Nucleotidyltransferase domain 117 153 1.5E-4 T 11-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 AMK58_18185 dbf305444f324860bb03c456b3d40685 291 Gene3D G3DSA:3.20.20.370 13 288 8.3E-42 T 11-10-2018 AMK58_18185 dbf305444f324860bb03c456b3d40685 291 Pfam PF04794 YdjC-like protein 16 275 5.6E-50 T 11-10-2018 IPR006879 Carbohydrate deacetylase YdjC-like AMK58_18185 dbf305444f324860bb03c456b3d40685 291 SUPERFAMILY SSF88713 15 288 5.11E-67 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMK58_12555 e066cf9d4b0be2e78da6fd8e06ed45c9 282 Pfam PF02678 Pirin 24 124 2.9E-37 T 11-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 AMK58_12555 e066cf9d4b0be2e78da6fd8e06ed45c9 282 Gene3D G3DSA:2.60.120.10 20 278 9.0E-98 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_12555 e066cf9d4b0be2e78da6fd8e06ed45c9 282 PIRSF PIRSF006232 5 282 8.3E-96 T 11-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 AMK58_12555 e066cf9d4b0be2e78da6fd8e06ed45c9 282 Gene3D G3DSA:2.60.120.10 146 252 9.0E-98 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_12555 e066cf9d4b0be2e78da6fd8e06ed45c9 282 SUPERFAMILY SSF51182 7 282 2.05E-85 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily AMK58_12555 e066cf9d4b0be2e78da6fd8e06ed45c9 282 Pfam PF05726 Pirin C-terminal cupin domain 180 282 1.9E-29 T 11-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 AMK58_10480 bf4024b90e27fb756f9bde87e0726535 284 SUPERFAMILY SSF55315 40 119 6.36E-10 T 11-10-2018 IPR029064 50S ribosomal protein L30e-like AMK58_10480 bf4024b90e27fb756f9bde87e0726535 284 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 43 120 8.8E-11 T 11-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 AMK58_10480 bf4024b90e27fb756f9bde87e0726535 284 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 43 282 1.9E-59 T 11-10-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 AMK58_10480 bf4024b90e27fb756f9bde87e0726535 284 SUPERFAMILY SSF75217 111 282 4.32E-45 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases AMK58_10480 bf4024b90e27fb756f9bde87e0726535 284 SMART SM00967 43 122 6.7E-14 T 11-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 AMK58_10480 bf4024b90e27fb756f9bde87e0726535 284 Gene3D G3DSA:3.30.1330.30 34 118 3.1E-7 T 11-10-2018 IPR029064 50S ribosomal protein L30e-like AMK58_10480 bf4024b90e27fb756f9bde87e0726535 284 Pfam PF00588 SpoU rRNA Methylase family 138 278 6.1E-38 T 11-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AMK58_10480 bf4024b90e27fb756f9bde87e0726535 284 Gene3D G3DSA:3.40.1280.10 123 284 5.7E-52 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMK58_26830 f75169786105f111fe04f58fcf0970dd 366 SUPERFAMILY SSF81271 282 363 2.83E-35 T 11-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 AMK58_26830 f75169786105f111fe04f58fcf0970dd 366 SUPERFAMILY SSF52540 3 304 3.5E-82 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_26830 f75169786105f111fe04f58fcf0970dd 366 Gene3D G3DSA:3.10.20.30 49 364 1.4E-152 T 11-10-2018 IPR012675 Beta-grasp domain superfamily AMK58_26830 f75169786105f111fe04f58fcf0970dd 366 Gene3D G3DSA:3.40.50.300 4 281 1.4E-152 T 11-10-2018 AMK58_26830 f75169786105f111fe04f58fcf0970dd 366 Gene3D G3DSA:1.10.150.300 114 201 1.4E-152 T 11-10-2018 IPR023192 TGS-like domain superfamily Reactome: R-HSA-114608 AMK58_26830 f75169786105f111fe04f58fcf0970dd 366 Pfam PF06071 Protein of unknown function (DUF933) 282 365 3.0E-39 T 11-10-2018 IPR013029 YchF, C-terminal domain Reactome: R-HSA-114608 AMK58_26830 f75169786105f111fe04f58fcf0970dd 366 PIRSF PIRSF006641 1 366 1.3E-158 T 11-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 AMK58_26830 f75169786105f111fe04f58fcf0970dd 366 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 366 8.1E-154 T 11-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 AMK58_26830 f75169786105f111fe04f58fcf0970dd 366 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 1.0E-33 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMK58_26830 f75169786105f111fe04f58fcf0970dd 366 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 71 86 1.0E-33 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMK58_26830 f75169786105f111fe04f58fcf0970dd 366 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 27 45 1.0E-33 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMK58_26830 f75169786105f111fe04f58fcf0970dd 366 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 88 106 1.0E-33 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMK58_26830 f75169786105f111fe04f58fcf0970dd 366 Pfam PF01926 50S ribosome-binding GTPase 5 117 1.0E-23 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMK58_26830 f75169786105f111fe04f58fcf0970dd 366 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 366 44.202 T 11-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 AMK58_05960 4994961b2db0718dfaba910f0ca184bc 421 Pfam PF12867 DinB superfamily 15 130 3.9E-14 T 11-10-2018 IPR024775 DinB-like domain AMK58_05960 4994961b2db0718dfaba910f0ca184bc 421 Pfam PF03781 Sulfatase-modifying factor enzyme 1 340 418 6.5E-8 T 11-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 AMK58_05960 4994961b2db0718dfaba910f0ca184bc 421 Pfam PF03781 Sulfatase-modifying factor enzyme 1 179 319 6.0E-26 T 11-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 AMK58_05960 4994961b2db0718dfaba910f0ca184bc 421 Gene3D G3DSA:3.90.1580.10 332 421 2.1E-10 T 11-10-2018 AMK58_05960 4994961b2db0718dfaba910f0ca184bc 421 SUPERFAMILY SSF56436 179 420 9.42E-69 T 11-10-2018 IPR016187 C-type lectin fold AMK58_05960 4994961b2db0718dfaba910f0ca184bc 421 Gene3D G3DSA:3.90.1580.10 175 331 7.2E-30 T 11-10-2018 AMK58_05960 4994961b2db0718dfaba910f0ca184bc 421 SUPERFAMILY SSF109854 9 142 1.85E-6 T 11-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes AMK58_05960 4994961b2db0718dfaba910f0ca184bc 421 TIGRFAM TIGR03440 egtB_TIGR03440: ergothioneine biosynthesis protein EgtB 11 418 1.8E-171 T 11-10-2018 IPR017806 Ergothioneine biosynthesis protein EgtB GO:0052699 KEGG: 00340+1.14.99.50|MetaCyc: PWY-7255 AMK58_05340 2fdb854c4f39d03042bb1f7d0ddbfed9 1167 Gene3D G3DSA:3.40.920.10 715 918 1.6E-17 T 11-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 AMK58_05340 2fdb854c4f39d03042bb1f7d0ddbfed9 1167 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 725 912 3.2E-24 T 11-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 AMK58_05340 2fdb854c4f39d03042bb1f7d0ddbfed9 1167 Gene3D G3DSA:3.40.50.970 9 220 1.0E-24 T 11-10-2018 AMK58_05340 2fdb854c4f39d03042bb1f7d0ddbfed9 1167 SUPERFAMILY SSF52518 431 618 1.18E-15 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMK58_05340 2fdb854c4f39d03042bb1f7d0ddbfed9 1167 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 451 600 8.6E-7 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMK58_05340 2fdb854c4f39d03042bb1f7d0ddbfed9 1167 SUPERFAMILY SSF52518 17 237 2.88E-19 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMK58_05340 2fdb854c4f39d03042bb1f7d0ddbfed9 1167 SUPERFAMILY SSF52922 266 395 4.19E-10 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMK58_05340 2fdb854c4f39d03042bb1f7d0ddbfed9 1167 SUPERFAMILY SSF53323 717 969 4.71E-31 T 11-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 AMK58_19250 e5aa2f875995e7b47bdd289b59006733 351 Pfam PF12800 4Fe-4S binding domain 62 74 0.0089 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMK58_19250 e5aa2f875995e7b47bdd289b59006733 351 Gene3D G3DSA:3.30.70.20 138 203 7.1E-50 T 11-10-2018 AMK58_19250 e5aa2f875995e7b47bdd289b59006733 351 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 8 41 0.0011 T 11-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal AMK58_19250 e5aa2f875995e7b47bdd289b59006733 351 SUPERFAMILY SSF54862 54 348 1.36E-60 T 11-10-2018 AMK58_19250 e5aa2f875995e7b47bdd289b59006733 351 Pfam PF13247 4Fe-4S dicluster domain 133 229 1.3E-21 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMK58_19250 e5aa2f875995e7b47bdd289b59006733 351 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 172 183 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMK58_19250 e5aa2f875995e7b47bdd289b59006733 351 Gene3D G3DSA:3.30.70.20 52 243 7.1E-50 T 11-10-2018 AMK58_06060 93dfc5a27157fb9d258bdb14ca95abe6 488 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 6 200 24.177 T 11-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 AMK58_06060 93dfc5a27157fb9d258bdb14ca95abe6 488 Gene3D G3DSA:3.40.50.10260 3 207 2.8E-59 T 11-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 AMK58_06060 93dfc5a27157fb9d258bdb14ca95abe6 488 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 8 200 1.8E-37 T 11-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 AMK58_06060 93dfc5a27157fb9d258bdb14ca95abe6 488 Gene3D G3DSA:3.40.1190.20 216 487 6.1E-72 T 11-10-2018 IPR029056 Ribokinase-like AMK58_06060 93dfc5a27157fb9d258bdb14ca95abe6 488 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 221 480 4.8E-56 T 11-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 AMK58_06060 93dfc5a27157fb9d258bdb14ca95abe6 488 PIRSF PIRSF017184 3 485 6.7E-105 T 11-10-2018 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 AMK58_06060 93dfc5a27157fb9d258bdb14ca95abe6 488 Pfam PF01256 Carbohydrate kinase 239 462 9.8E-48 T 11-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 AMK58_06060 93dfc5a27157fb9d258bdb14ca95abe6 488 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 215 485 19.311 T 11-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 AMK58_06060 93dfc5a27157fb9d258bdb14ca95abe6 488 SUPERFAMILY SSF64153 4 237 2.22E-59 T 11-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 AMK58_06060 93dfc5a27157fb9d258bdb14ca95abe6 488 SUPERFAMILY SSF53613 213 482 6.38E-62 T 11-10-2018 IPR029056 Ribokinase-like AMK58_06060 93dfc5a27157fb9d258bdb14ca95abe6 488 Pfam PF03853 YjeF-related protein N-terminus 26 179 5.9E-34 T 11-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 AMK58_00660 06dece1e1f8193e064c1c45c4270e053 351 SUPERFAMILY SSF88713 56 224 7.7E-31 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMK58_00660 06dece1e1f8193e064c1c45c4270e053 351 Gene3D G3DSA:3.20.20.370 32 253 1.2E-47 T 11-10-2018 AMK58_00660 06dece1e1f8193e064c1c45c4270e053 351 Pfam PF01522 Polysaccharide deacetylase 93 219 6.9E-23 T 11-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMK58_17600 42b2c2cbe66b18a4b61ee9930bd52cd0 481 SUPERFAMILY SSF52540 141 382 1.17E-73 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_17600 42b2c2cbe66b18a4b61ee9930bd52cd0 481 Gene3D G3DSA:3.40.50.300 132 312 2.6E-65 T 11-10-2018 AMK58_17600 42b2c2cbe66b18a4b61ee9930bd52cd0 481 Pfam PF02954 Bacterial regulatory protein, Fis family 432 470 1.3E-11 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMK58_17600 42b2c2cbe66b18a4b61ee9930bd52cd0 481 Pfam PF00158 Sigma-54 interaction domain 141 307 3.1E-69 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AMK58_17600 42b2c2cbe66b18a4b61ee9930bd52cd0 481 SUPERFAMILY SSF52172 2 185 1.42E-42 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_17600 42b2c2cbe66b18a4b61ee9930bd52cd0 481 SMART SM00382 161 304 8.1E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_17600 42b2c2cbe66b18a4b61ee9930bd52cd0 481 Pfam PF00072 Response regulator receiver domain 6 115 7.9E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_17600 42b2c2cbe66b18a4b61ee9930bd52cd0 481 Gene3D G3DSA:1.10.8.60 313 384 9.0E-23 T 11-10-2018 AMK58_17600 42b2c2cbe66b18a4b61ee9930bd52cd0 481 SUPERFAMILY SSF46689 353 474 8.96E-18 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_17600 42b2c2cbe66b18a4b61ee9930bd52cd0 481 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 227 242 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AMK58_17600 42b2c2cbe66b18a4b61ee9930bd52cd0 481 Gene3D G3DSA:1.10.10.60 385 474 1.3E-22 T 11-10-2018 AMK58_17600 42b2c2cbe66b18a4b61ee9930bd52cd0 481 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 455 475 4.9E-11 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMK58_17600 42b2c2cbe66b18a4b61ee9930bd52cd0 481 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 438 455 4.9E-11 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMK58_17600 42b2c2cbe66b18a4b61ee9930bd52cd0 481 SMART SM00448 4 115 2.5E-32 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_17600 42b2c2cbe66b18a4b61ee9930bd52cd0 481 Gene3D G3DSA:3.40.50.2300 2 131 8.2E-33 T 11-10-2018 AMK58_17600 42b2c2cbe66b18a4b61ee9930bd52cd0 481 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 353 362 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site AMK58_17600 42b2c2cbe66b18a4b61ee9930bd52cd0 481 TIGRFAM TIGR01818 ntrC: nitrogen regulation protein NR(I) 6 472 1.7E-230 T 11-10-2018 IPR010114 DNA-binding transcriptional regulator NtrC GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0006808 AMK58_26235 54e0bc3d70b00d463c0754b7438eefb3 130 Pfam PF00460 Flagella basal body rod protein 12 39 7.5E-5 T 11-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 AMK58_26235 54e0bc3d70b00d463c0754b7438eefb3 130 PIRSF PIRSF002889 1 130 2.9E-16 T 11-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 AMK58_08095 7bc26ef7f82c174a41eff97ee9433d77 320 Hamap MF_00024 Cobalamin biosynthesis protein CbiB [cbiB]. 1 320 100.473 T 11-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 AMK58_08095 7bc26ef7f82c174a41eff97ee9433d77 320 TIGRFAM TIGR00380 cobD: cobalamin biosynthesis protein CobD 4 301 1.7E-61 T 11-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 AMK58_08095 7bc26ef7f82c174a41eff97ee9433d77 320 Pfam PF03186 CobD/Cbib protein 8 302 2.9E-91 T 11-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 AMK58_05470 613e4b878efb0186d7177713650b5cf6 387 Gene3D G3DSA:3.30.479.30 146 256 9.6E-21 T 11-10-2018 AMK58_05470 613e4b878efb0186d7177713650b5cf6 387 TIGRFAM TIGR01933 hflK: HflK protein 90 361 1.2E-85 T 11-10-2018 IPR010201 HflK GO:0016021 AMK58_05470 613e4b878efb0186d7177713650b5cf6 387 SUPERFAMILY SSF117892 153 273 8.63E-20 T 11-10-2018 IPR036013 Band 7/SPFH domain superfamily AMK58_05470 613e4b878efb0186d7177713650b5cf6 387 SMART SM00244 88 266 2.0E-21 T 11-10-2018 IPR001107 Band 7 domain AMK58_05470 613e4b878efb0186d7177713650b5cf6 387 Pfam PF01145 SPFH domain / Band 7 family 92 281 5.7E-24 T 11-10-2018 IPR001107 Band 7 domain AMK58_11985 15a3b7d67d5863eb967ed8773e6a4367 220 Pfam PF13417 Glutathione S-transferase, N-terminal domain 12 82 3.5E-12 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMK58_11985 15a3b7d67d5863eb967ed8773e6a4367 220 SUPERFAMILY SSF52833 4 88 1.85E-19 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_11985 15a3b7d67d5863eb967ed8773e6a4367 220 Gene3D G3DSA:1.20.1050.10 85 195 6.0E-59 T 11-10-2018 AMK58_11985 15a3b7d67d5863eb967ed8773e6a4367 220 SUPERFAMILY SSF47616 82 208 6.54E-15 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMK58_11985 15a3b7d67d5863eb967ed8773e6a4367 220 Gene3D G3DSA:3.40.30.10 6 202 6.0E-59 T 11-10-2018 AMK58_21055 04f0fe76717b4ff29de5409fffcee99a 152 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 4 145 1.7E-34 T 11-10-2018 IPR002178 PTS EIIA type-2 domain AMK58_21055 04f0fe76717b4ff29de5409fffcee99a 152 SUPERFAMILY SSF55804 3 144 4.71E-42 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 AMK58_21055 04f0fe76717b4ff29de5409fffcee99a 152 TIGRFAM TIGR01419 nitro_reg_IIA: PTS IIA-like nitrogen-regulatory protein PtsN 3 144 3.5E-49 T 11-10-2018 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN GO:0008982|GO:0009401 AMK58_21055 04f0fe76717b4ff29de5409fffcee99a 152 Gene3D G3DSA:3.40.930.10 1 151 2.1E-50 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 AMK58_21055 04f0fe76717b4ff29de5409fffcee99a 152 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 49 65 - T 11-10-2018 IPR002178 PTS EIIA type-2 domain AMK58_25875 4cc88feb5201df552e66daf70cfa3195 577 SUPERFAMILY SSF52794 4 101 4.19E-19 T 11-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 AMK58_25875 4cc88feb5201df552e66daf70cfa3195 577 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 116 205 6.8E-18 T 11-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AMK58_25875 4cc88feb5201df552e66daf70cfa3195 577 Pfam PF02378 Phosphotransferase system, EIIC 245 512 5.8E-16 T 11-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AMK58_25875 4cc88feb5201df552e66daf70cfa3195 577 Gene3D G3DSA:3.40.50.2300 103 212 1.8E-38 T 11-10-2018 AMK58_25875 4cc88feb5201df552e66daf70cfa3195 577 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 115 198 1.1E-34 T 11-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 AMK58_25875 4cc88feb5201df552e66daf70cfa3195 577 SUPERFAMILY SSF52794 113 213 1.74E-35 T 11-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 AMK58_25875 4cc88feb5201df552e66daf70cfa3195 577 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 235 568 1.3E-139 T 11-10-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 AMK58_25875 4cc88feb5201df552e66daf70cfa3195 577 Gene3D G3DSA:3.40.50.2300 2 102 5.7E-13 T 11-10-2018 AMK58_15760 08f8f20fb05422a131398dbccb7aa1a1 244 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_15760 08f8f20fb05422a131398dbccb7aa1a1 244 SMART SM00382 38 232 5.4E-5 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_15760 08f8f20fb05422a131398dbccb7aa1a1 244 Pfam PF00005 ABC transporter 30 174 3.2E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_15760 08f8f20fb05422a131398dbccb7aa1a1 244 SUPERFAMILY SSF52540 11 237 5.78E-57 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_15760 08f8f20fb05422a131398dbccb7aa1a1 244 Gene3D G3DSA:3.40.50.300 9 243 1.8E-59 T 11-10-2018 AMK58_23885 b3fa0046b9255c73ef30b9c0d50ae49a 273 SUPERFAMILY SSF158682 57 271 7.98E-18 T 11-10-2018 IPR029024 TerB-like AMK58_23885 b3fa0046b9255c73ef30b9c0d50ae49a 273 Pfam PF04391 Protein of unknown function (DUF533) 105 272 2.8E-41 T 11-10-2018 IPR007486 Inner membrane protein YebE AMK58_23885 b3fa0046b9255c73ef30b9c0d50ae49a 273 Gene3D G3DSA:1.10.3680.10 157 273 2.9E-11 T 11-10-2018 IPR029024 TerB-like AMK58_09645 d170385850be1888d418f97a69f311cc 448 Hamap MF_00672 UPF0761 membrane protein YihY [yihY]. 1 300 21.137 T 11-10-2018 IPR023679 Uncharacterised protein family UPF0761, bacterial AMK58_09645 d170385850be1888d418f97a69f311cc 448 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 15 268 1.6E-62 T 11-10-2018 IPR017039 Virulence factor BrkB AMK58_09645 d170385850be1888d418f97a69f311cc 448 Pfam PF03631 Virulence factor BrkB 19 268 1.4E-49 T 11-10-2018 IPR017039 Virulence factor BrkB AMK58_09835 426333a4ee69294c66da484e1f0a60fd 644 SUPERFAMILY SSF56731 112 421 1.15E-96 T 11-10-2018 AMK58_09835 426333a4ee69294c66da484e1f0a60fd 644 Pfam PF01807 CHC2 zinc finger 5 97 2.1E-32 T 11-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 AMK58_09835 426333a4ee69294c66da484e1f0a60fd 644 Pfam PF13662 Toprim domain 258 327 1.0E-13 T 11-10-2018 IPR006171 TOPRIM domain AMK58_09835 426333a4ee69294c66da484e1f0a60fd 644 Gene3D G3DSA:3.90.980.10 106 237 7.3E-38 T 11-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily AMK58_09835 426333a4ee69294c66da484e1f0a60fd 644 TIGRFAM TIGR01391 dnaG: DNA primase 4 418 5.8E-130 T 11-10-2018 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 AMK58_09835 426333a4ee69294c66da484e1f0a60fd 644 SUPERFAMILY SSF57783 1 97 9.01E-35 T 11-10-2018 AMK58_09835 426333a4ee69294c66da484e1f0a60fd 644 SMART SM00400 34 88 3.3E-29 T 11-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 AMK58_09835 426333a4ee69294c66da484e1f0a60fd 644 Gene3D G3DSA:3.40.1360.10 238 368 4.7E-39 T 11-10-2018 AMK58_09835 426333a4ee69294c66da484e1f0a60fd 644 SMART SM00493 256 331 3.0E-14 T 11-10-2018 IPR006171 TOPRIM domain AMK58_09835 426333a4ee69294c66da484e1f0a60fd 644 Hamap MF_00974 DNA primase [dnaG]. 2 630 25.405 T 11-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 AMK58_09835 426333a4ee69294c66da484e1f0a60fd 644 PIRSF PIRSF002811 1 632 6.2E-132 T 11-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 AMK58_09835 426333a4ee69294c66da484e1f0a60fd 644 Gene3D G3DSA:3.90.580.10 1 100 1.0E-35 T 11-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 AMK58_09835 426333a4ee69294c66da484e1f0a60fd 644 Pfam PF08275 DNA primase catalytic core, N-terminal domain 122 248 1.1E-36 T 11-10-2018 IPR013264 DNA primase, catalytic core, N-terminal AMK58_12520 838ea6acc29cc2ffe3248748d3b0a999 90 Gene3D G3DSA:3.30.300.90 2 90 4.7E-32 T 11-10-2018 AMK58_12520 838ea6acc29cc2ffe3248748d3b0a999 90 PIRSF PIRSF003113 1 90 1.4E-30 T 11-10-2018 IPR002634 BolA protein AMK58_12520 838ea6acc29cc2ffe3248748d3b0a999 90 SUPERFAMILY SSF82657 2 88 5.1E-27 T 11-10-2018 IPR036065 BolA-like superfamily AMK58_12520 838ea6acc29cc2ffe3248748d3b0a999 90 Pfam PF01722 BolA-like protein 11 88 1.9E-30 T 11-10-2018 IPR002634 BolA protein AMK58_06385 cb3f2123e46ac7cec68c14f94da721b8 262 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 3 262 37.608 T 11-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 AMK58_06385 cb3f2123e46ac7cec68c14f94da721b8 262 Gene3D G3DSA:3.20.20.70 1 262 1.3E-100 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_06385 cb3f2123e46ac7cec68c14f94da721b8 262 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 56 74 - T 11-10-2018 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 AMK58_06385 cb3f2123e46ac7cec68c14f94da721b8 262 Pfam PF00218 Indole-3-glycerol phosphate synthase 5 260 1.9E-100 T 11-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 AMK58_06385 cb3f2123e46ac7cec68c14f94da721b8 262 SUPERFAMILY SSF51366 12 261 5.06E-89 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AMK58_11955 4042ab675ac9a804f5b5cde0f9da47b1 308 SUPERFAMILY SSF51735 94 274 3.72E-47 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_11955 4042ab675ac9a804f5b5cde0f9da47b1 308 SUPERFAMILY SSF52283 35 109 1.7E-5 T 11-10-2018 AMK58_11955 4042ab675ac9a804f5b5cde0f9da47b1 308 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 212 228 - T 11-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AMK58_11955 4042ab675ac9a804f5b5cde0f9da47b1 308 Gene3D G3DSA:3.40.50.720 92 274 1.4E-115 T 11-10-2018 AMK58_11955 4042ab675ac9a804f5b5cde0f9da47b1 308 Gene3D G3DSA:3.40.50.720 15 308 1.4E-115 T 11-10-2018 AMK58_11955 4042ab675ac9a804f5b5cde0f9da47b1 308 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 102 273 1.5E-45 T 11-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AMK58_27070 82d5e6b1e5a960ec8c93414c330dcff4 498 SUPERFAMILY SSF54862 116 370 3.18E-28 T 11-10-2018 AMK58_27070 82d5e6b1e5a960ec8c93414c330dcff4 498 Gene3D G3DSA:1.10.1060.10 230 308 3.4E-5 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AMK58_27070 82d5e6b1e5a960ec8c93414c330dcff4 498 Pfam PF12801 4Fe-4S binding domain 107 149 3.4E-10 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMK58_27070 82d5e6b1e5a960ec8c93414c330dcff4 498 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 46 497 8.3E-151 T 11-10-2018 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021|GO:0055114 AMK58_27070 82d5e6b1e5a960ec8c93414c330dcff4 498 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 285 296 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMK58_27070 82d5e6b1e5a960ec8c93414c330dcff4 498 Gene3D G3DSA:2.60.40.10 378 498 1.6E-18 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_27070 82d5e6b1e5a960ec8c93414c330dcff4 498 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 374 498 6.3E-26 T 11-10-2018 IPR032879 FixG, C-terminal immunoglobulin-like domain AMK58_27070 82d5e6b1e5a960ec8c93414c330dcff4 498 Pfam PF13746 4Fe-4S dicluster domain 229 337 2.9E-44 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMK58_13560 0c0be2cb5630e475a3e1001ebc8797ed 274 Pfam PF10108 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB 28 243 2.8E-57 T 11-10-2018 IPR019288 Predicted 3'-5' exonuclease, PolB-like AMK58_13560 0c0be2cb5630e475a3e1001ebc8797ed 274 SUPERFAMILY SSF53098 5 207 7.59E-26 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMK58_13560 0c0be2cb5630e475a3e1001ebc8797ed 274 Gene3D G3DSA:3.30.420.10 6 198 5.9E-19 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMK58_20990 aa73acb6daec9cb566a3b1ed6a36c62c 181 ProSitePatterns PS00893 Nudix box signature. 81 102 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMK58_20990 aa73acb6daec9cb566a3b1ed6a36c62c 181 Pfam PF00293 NUDIX domain 47 165 9.6E-18 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMK58_20990 aa73acb6daec9cb566a3b1ed6a36c62c 181 PRINTS PR00502 NUDIX hydrolase family signature 90 105 3.4E-6 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AMK58_20990 aa73acb6daec9cb566a3b1ed6a36c62c 181 PRINTS PR00502 NUDIX hydrolase family signature 76 90 3.4E-6 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AMK58_20990 aa73acb6daec9cb566a3b1ed6a36c62c 181 SUPERFAMILY SSF55811 41 173 2.17E-29 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMK58_20990 aa73acb6daec9cb566a3b1ed6a36c62c 181 Gene3D G3DSA:3.90.79.10 32 175 1.0E-26 T 11-10-2018 AMK58_08210 f8cbaea443a16d47607b6a9c9cf664f7 165 Pfam PF06073 Bacterial protein of unknown function (DUF934) 51 156 2.7E-36 T 11-10-2018 IPR008318 Uncharacterised conserved protein UCP030820 AMK58_08210 f8cbaea443a16d47607b6a9c9cf664f7 165 PIRSF PIRSF030820 2 164 3.7E-44 T 11-10-2018 IPR008318 Uncharacterised conserved protein UCP030820 AMK58_21230 47465962e1c98c9e33d043a34ecf1651 211 SUPERFAMILY SSF54862 1 180 6.07E-51 T 11-10-2018 AMK58_21230 47465962e1c98c9e33d043a34ecf1651 211 Gene3D G3DSA:3.30.70.20 5 167 9.9E-35 T 11-10-2018 AMK58_21230 47465962e1c98c9e33d043a34ecf1651 211 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 87 98 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMK58_21230 47465962e1c98c9e33d043a34ecf1651 211 Pfam PF13247 4Fe-4S dicluster domain 52 123 4.2E-10 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMK58_21230 47465962e1c98c9e33d043a34ecf1651 211 PRINTS PR00354 7Fe ferredoxin signature 65 75 4.6E-5 T 11-10-2018 IPR000813 7Fe ferredoxin GO:0009055 AMK58_21230 47465962e1c98c9e33d043a34ecf1651 211 PRINTS PR00354 7Fe ferredoxin signature 55 65 4.6E-5 T 11-10-2018 IPR000813 7Fe ferredoxin GO:0009055 AMK58_21230 47465962e1c98c9e33d043a34ecf1651 211 PRINTS PR00354 7Fe ferredoxin signature 82 99 4.6E-5 T 11-10-2018 IPR000813 7Fe ferredoxin GO:0009055 AMK58_21230 47465962e1c98c9e33d043a34ecf1651 211 Gene3D G3DSA:3.30.70.20 61 118 9.9E-35 T 11-10-2018 AMK58_11330 386d5f68521db0af08bb4026d7ecd7be 641 SUPERFAMILY SSF48452 147 345 4.64E-34 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_11330 386d5f68521db0af08bb4026d7ecd7be 641 Gene3D G3DSA:1.25.40.10 94 353 1.6E-45 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_11330 386d5f68521db0af08bb4026d7ecd7be 641 Pfam PF13432 Tetratricopeptide repeat 266 318 0.0027 T 11-10-2018 AMK58_11330 386d5f68521db0af08bb4026d7ecd7be 641 Pfam PF13432 Tetratricopeptide repeat 154 214 5.7E-7 T 11-10-2018 AMK58_11330 386d5f68521db0af08bb4026d7ecd7be 641 Pfam PF13432 Tetratricopeptide repeat 17 57 0.005 T 11-10-2018 AMK58_11330 386d5f68521db0af08bb4026d7ecd7be 641 SUPERFAMILY SSF53756 371 616 2.88E-27 T 11-10-2018 AMK58_11330 386d5f68521db0af08bb4026d7ecd7be 641 Gene3D G3DSA:3.40.50.2000 507 609 2.4E-6 T 11-10-2018 AMK58_11330 386d5f68521db0af08bb4026d7ecd7be 641 SUPERFAMILY SSF48452 7 180 5.31E-18 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_11330 386d5f68521db0af08bb4026d7ecd7be 641 Gene3D G3DSA:1.25.40.10 2 93 2.0E-11 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_11330 386d5f68521db0af08bb4026d7ecd7be 641 SMART SM00028 72 108 81.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_11330 386d5f68521db0af08bb4026d7ecd7be 641 SMART SM00028 4 37 5.9 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_11330 386d5f68521db0af08bb4026d7ecd7be 641 SMART SM00028 182 215 0.0021 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_11330 386d5f68521db0af08bb4026d7ecd7be 641 SMART SM00028 216 249 1.3 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_11330 386d5f68521db0af08bb4026d7ecd7be 641 SMART SM00028 284 317 15.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_11330 386d5f68521db0af08bb4026d7ecd7be 641 SMART SM00028 148 181 0.11 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_21150 088cf1f9c18f0c1079d345f3e5eef84d 449 SMART SM00387 340 447 2.6E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_21150 088cf1f9c18f0c1079d345f3e5eef84d 449 PRINTS PR00344 Bacterial sensor protein C-terminal signature 407 425 5.3E-8 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_21150 088cf1f9c18f0c1079d345f3e5eef84d 449 PRINTS PR00344 Bacterial sensor protein C-terminal signature 376 390 5.3E-8 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_21150 088cf1f9c18f0c1079d345f3e5eef84d 449 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 343 445 3.8E-13 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_21150 088cf1f9c18f0c1079d345f3e5eef84d 449 SUPERFAMILY SSF55874 311 445 2.36E-25 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_21150 088cf1f9c18f0c1079d345f3e5eef84d 449 Gene3D G3DSA:3.30.565.10 304 447 2.8E-24 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_03090 77850c4d2dfb43c0b6c59f01bb9431be 174 SUPERFAMILY SSF88946 12 92 2.24E-11 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMK58_03090 77850c4d2dfb43c0b6c59f01bb9431be 174 Gene3D G3DSA:1.10.1740.10 4 77 5.9E-7 T 11-10-2018 AMK58_03090 77850c4d2dfb43c0b6c59f01bb9431be 174 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 11 167 2.9E-25 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMK58_03090 77850c4d2dfb43c0b6c59f01bb9431be 174 Pfam PF04542 Sigma-70 region 2 15 81 7.2E-9 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMK58_03090 77850c4d2dfb43c0b6c59f01bb9431be 174 SUPERFAMILY SSF88659 94 170 2.16E-16 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMK58_03090 77850c4d2dfb43c0b6c59f01bb9431be 174 Gene3D G3DSA:1.10.10.10 79 172 4.0E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_03090 77850c4d2dfb43c0b6c59f01bb9431be 174 Pfam PF08281 Sigma-70, region 4 113 164 7.7E-17 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMK58_24375 e305a6e12604c15fe7251702c3604194 346 Pfam PF05661 Protein of unknown function (DUF808) 3 330 3.1E-118 T 11-10-2018 IPR008526 Inner membrane protein YedI AMK58_24375 e305a6e12604c15fe7251702c3604194 346 PIRSF PIRSF016660 232 341 7.9E-19 T 11-10-2018 IPR008526 Inner membrane protein YedI AMK58_24375 e305a6e12604c15fe7251702c3604194 346 PIRSF PIRSF016660 1 223 5.7E-79 T 11-10-2018 IPR008526 Inner membrane protein YedI AMK58_28225 a423670113b305ec7676343b9a1954fd 343 Gene3D G3DSA:3.30.360.10 122 334 3.3E-124 T 11-10-2018 AMK58_28225 a423670113b305ec7676343b9a1954fd 343 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 135 225 3.0E-12 T 11-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 AMK58_28225 a423670113b305ec7676343b9a1954fd 343 SUPERFAMILY SSF51735 4 198 1.35E-45 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_28225 a423670113b305ec7676343b9a1954fd 343 Gene3D G3DSA:3.40.50.720 5 312 3.3E-124 T 11-10-2018 AMK58_28225 a423670113b305ec7676343b9a1954fd 343 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 120 2.8E-24 T 11-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMK58_06140 775a7cc531a6e899355592669c631578 694 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 3 76 4.6E-18 T 11-10-2018 AMK58_06140 775a7cc531a6e899355592669c631578 694 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 98 110 - T 11-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06140 775a7cc531a6e899355592669c631578 694 SMART SM00929 83 123 6.4E-22 T 11-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06140 775a7cc531a6e899355592669c631578 694 Gene3D G3DSA:3.40.228.10 346 399 2.1E-10 T 11-10-2018 AMK58_06140 775a7cc531a6e899355592669c631578 694 Gene3D G3DSA:3.40.50.740 420 630 4.8E-20 T 11-10-2018 AMK58_06140 775a7cc531a6e899355592669c631578 694 SUPERFAMILY SSF54862 75 211 7.53E-39 T 11-10-2018 AMK58_06140 775a7cc531a6e899355592669c631578 694 Pfam PF00384 Molybdopterin oxidoreductase 271 598 1.7E-74 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06140 775a7cc531a6e899355592669c631578 694 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 145 155 - T 11-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06140 775a7cc531a6e899355592669c631578 694 Gene3D G3DSA:3.10.20.740 1 123 1.2E-43 T 11-10-2018 AMK58_06140 775a7cc531a6e899355592669c631578 694 Gene3D G3DSA:3.30.70.20 125 204 6.7E-7 T 11-10-2018 AMK58_06140 775a7cc531a6e899355592669c631578 694 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 83 120 9.1E-18 T 11-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06140 775a7cc531a6e899355592669c631578 694 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 4 596 8.0E-230 T 11-10-2018 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06140 775a7cc531a6e899355592669c631578 694 Gene3D G3DSA:3.40.50.740 277 345 2.1E-10 T 11-10-2018 AMK58_06140 775a7cc531a6e899355592669c631578 694 Pfam PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal 637 671 1.3E-13 T 11-10-2018 IPR015405 NADH-quinone oxidoreductase, chain G, C-terminal GO:0016651|GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06140 775a7cc531a6e899355592669c631578 694 SUPERFAMILY SSF53706 213 627 1.93E-106 T 11-10-2018 AMK58_06140 775a7cc531a6e899355592669c631578 694 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 31 48 - T 11-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06140 775a7cc531a6e899355592669c631578 694 SUPERFAMILY SSF54292 1 74 5.91E-21 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMK58_14360 e718101c8d339ed07e91ed8162eb7a25 542 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 418 526 9.8E-19 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_14360 e718101c8d339ed07e91ed8162eb7a25 542 SMART SM00387 416 527 3.0E-31 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_14360 e718101c8d339ed07e91ed8162eb7a25 542 SUPERFAMILY SSF47384 295 370 1.22E-5 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_14360 e718101c8d339ed07e91ed8162eb7a25 542 Pfam PF00512 His Kinase A (phospho-acceptor) domain 304 367 3.2E-6 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_14360 e718101c8d339ed07e91ed8162eb7a25 542 SUPERFAMILY SSF55874 366 525 8.77E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_14360 e718101c8d339ed07e91ed8162eb7a25 542 PRINTS PR00344 Bacterial sensor protein C-terminal signature 487 505 5.7E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_14360 e718101c8d339ed07e91ed8162eb7a25 542 PRINTS PR00344 Bacterial sensor protein C-terminal signature 511 524 5.7E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_14360 e718101c8d339ed07e91ed8162eb7a25 542 PRINTS PR00344 Bacterial sensor protein C-terminal signature 476 486 5.7E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_14360 e718101c8d339ed07e91ed8162eb7a25 542 PRINTS PR00344 Bacterial sensor protein C-terminal signature 458 472 5.7E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_14360 e718101c8d339ed07e91ed8162eb7a25 542 SMART SM00388 304 374 1.1E-4 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_14360 e718101c8d339ed07e91ed8162eb7a25 542 Pfam PF17158 Membrane-associated sensor, integral membrane domain 53 284 2.5E-25 T 11-10-2018 IPR033424 Membrane-associated sensor domain AMK58_14360 e718101c8d339ed07e91ed8162eb7a25 542 Gene3D G3DSA:1.10.287.130 309 371 4.3E-16 T 11-10-2018 AMK58_14360 e718101c8d339ed07e91ed8162eb7a25 542 Gene3D G3DSA:3.30.565.10 374 532 6.6E-39 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_16145 71398b6dbbd14e87def5e388bee01f76 523 SUPERFAMILY SSF51905 23 411 2.33E-25 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_16145 71398b6dbbd14e87def5e388bee01f76 523 Pfam PF01266 FAD dependent oxidoreductase 24 370 1.3E-45 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMK58_16145 71398b6dbbd14e87def5e388bee01f76 523 Gene3D G3DSA:3.50.50.60 24 404 7.1E-67 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_16145 71398b6dbbd14e87def5e388bee01f76 523 Gene3D G3DSA:1.10.8.870 437 513 4.2E-5 T 11-10-2018 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AMK58_16145 71398b6dbbd14e87def5e388bee01f76 523 SUPERFAMILY SSF54373 264 360 6.15E-11 T 11-10-2018 AMK58_16145 71398b6dbbd14e87def5e388bee01f76 523 Gene3D G3DSA:3.30.9.10 116 360 7.1E-67 T 11-10-2018 AMK58_16145 71398b6dbbd14e87def5e388bee01f76 523 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 52 64 2.5E-11 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AMK58_16145 71398b6dbbd14e87def5e388bee01f76 523 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 23 35 2.5E-11 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AMK58_16145 71398b6dbbd14e87def5e388bee01f76 523 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 385 397 2.5E-11 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AMK58_16145 71398b6dbbd14e87def5e388bee01f76 523 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 353 359 2.5E-11 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AMK58_27035 8fcc00743d7a1757fb944e7c903f1585 492 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 278 289 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMK58_27035 8fcc00743d7a1757fb944e7c903f1585 492 Pfam PF12801 4Fe-4S binding domain 100 140 3.2E-11 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMK58_27035 8fcc00743d7a1757fb944e7c903f1585 492 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 366 492 9.9E-29 T 11-10-2018 IPR032879 FixG, C-terminal immunoglobulin-like domain AMK58_27035 8fcc00743d7a1757fb944e7c903f1585 492 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 39 491 4.5E-153 T 11-10-2018 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021|GO:0055114 AMK58_27035 8fcc00743d7a1757fb944e7c903f1585 492 SUPERFAMILY SSF54862 109 338 1.88E-26 T 11-10-2018 AMK58_27035 8fcc00743d7a1757fb944e7c903f1585 492 Pfam PF13746 4Fe-4S dicluster domain 222 330 7.6E-43 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMK58_27035 8fcc00743d7a1757fb944e7c903f1585 492 Gene3D G3DSA:2.60.40.10 368 491 4.3E-19 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_25640 62b747268b291e9a0e42cafc3c1cf46d 293 SUPERFAMILY SSF53850 90 292 4.35E-42 T 11-10-2018 AMK58_25640 62b747268b291e9a0e42cafc3c1cf46d 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.6E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_25640 62b747268b291e9a0e42cafc3c1cf46d 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.6E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_25640 62b747268b291e9a0e42cafc3c1cf46d 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.6E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_25640 62b747268b291e9a0e42cafc3c1cf46d 293 Gene3D G3DSA:3.40.190.290 90 293 1.3E-43 T 11-10-2018 AMK58_25640 62b747268b291e9a0e42cafc3c1cf46d 293 Gene3D G3DSA:1.10.10.10 1 84 9.4E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_25640 62b747268b291e9a0e42cafc3c1cf46d 293 Pfam PF03466 LysR substrate binding domain 88 292 8.7E-46 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_25640 62b747268b291e9a0e42cafc3c1cf46d 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.5E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_25640 62b747268b291e9a0e42cafc3c1cf46d 293 SUPERFAMILY SSF46785 1 85 2.16E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_07215 e9c8fd41dea2900fde4a28a407383bf2 557 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 70 237 7.0E-16 T 11-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like AMK58_19855 ef21f0ddfedd5453b5f04f2c43d2c88e 217 Pfam PF01865 Protein of unknown function DUF47 5 215 5.1E-29 T 11-10-2018 IPR018445 Putative phosphate transport regulator AMK58_19855 ef21f0ddfedd5453b5f04f2c43d2c88e 217 Gene3D G3DSA:1.20.58.220 15 216 5.5E-47 T 11-10-2018 IPR038078 PhoU-like domain superfamily AMK58_05750 4209be892f8fa2b82b85017723c4e735 252 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 127 187 1.0E-12 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMK58_05750 4209be892f8fa2b82b85017723c4e735 252 SUPERFAMILY SSF56784 6 214 1.47E-50 T 11-10-2018 IPR036412 HAD-like superfamily AMK58_05750 4209be892f8fa2b82b85017723c4e735 252 Gene3D G3DSA:1.10.150.240 20 87 2.9E-50 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 AMK58_05750 4209be892f8fa2b82b85017723c4e735 252 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 131 147 1.1E-10 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMK58_05750 4209be892f8fa2b82b85017723c4e735 252 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 100 113 1.1E-10 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMK58_05750 4209be892f8fa2b82b85017723c4e735 252 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 149 169 1.1E-10 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMK58_05750 4209be892f8fa2b82b85017723c4e735 252 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 5 16 1.1E-10 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMK58_05750 4209be892f8fa2b82b85017723c4e735 252 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 7 181 1.4E-8 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMK58_05750 4209be892f8fa2b82b85017723c4e735 252 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 187 3.2E-31 T 11-10-2018 AMK58_05750 4209be892f8fa2b82b85017723c4e735 252 Gene3D G3DSA:3.40.50.1000 6 205 2.9E-50 T 11-10-2018 IPR023214 HAD superfamily AMK58_20830 b42023d47ab41b8be5e7b104e659cbc4 198 Pfam PF03551 Transcriptional regulator PadR-like family 58 127 5.1E-15 T 11-10-2018 IPR005149 Transcription regulator PadR, N-terminal AMK58_20830 b42023d47ab41b8be5e7b104e659cbc4 198 Gene3D G3DSA:1.10.10.10 37 151 1.8E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_20830 b42023d47ab41b8be5e7b104e659cbc4 198 SUPERFAMILY SSF46785 54 167 5.36E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_18660 cea3f603cf2a2bebb4659b529427ff85 428 Gene3D G3DSA:3.20.20.300 76 420 2.4E-80 T 11-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 AMK58_18660 cea3f603cf2a2bebb4659b529427ff85 428 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 105 417 1.5E-52 T 11-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMK58_18660 cea3f603cf2a2bebb4659b529427ff85 428 SUPERFAMILY SSF51445 98 417 4.53E-57 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily AMK58_20585 17933da55cb65d533e84624fa74a0ffa 672 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 566 1.6E-143 T 11-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 AMK58_20585 17933da55cb65d533e84624fa74a0ffa 672 PIRSF PIRSF001589 1 649 1.9E-157 T 11-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 AMK58_20585 17933da55cb65d533e84624fa74a0ffa 672 SUPERFAMILY SSF52402 220 603 1.75E-64 T 11-10-2018 AMK58_20585 17933da55cb65d533e84624fa74a0ffa 672 Pfam PF00733 Asparagine synthase 244 633 2.1E-84 T 11-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 AMK58_20585 17933da55cb65d533e84624fa74a0ffa 672 Pfam PF13537 Glutamine amidotransferase domain 48 165 2.8E-40 T 11-10-2018 IPR017932 Glutamine amidotransferase type 2 domain AMK58_20585 17933da55cb65d533e84624fa74a0ffa 672 Gene3D G3DSA:3.60.20.10 4 184 2.9E-57 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMK58_20585 17933da55cb65d533e84624fa74a0ffa 672 SUPERFAMILY SSF56235 1 224 1.54E-56 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMK58_17005 42e9ee96c154596815d06407f019c040 320 Pfam PF07786 Protein of unknown function (DUF1624) 20 236 3.9E-65 T 11-10-2018 IPR012429 Domain of unknown function DUF1624 Reactome: R-HSA-2024096|Reactome: R-HSA-2206291|Reactome: R-HSA-6798695 AMK58_13380 dfb6c923f10a40e647274c812239df30 548 Pfam PF13005 zinc-finger binding domain of transposase IS66 140 183 8.5E-16 T 11-10-2018 IPR024474 Zinc-finger binding domain of transposase IS66 AMK58_13380 dfb6c923f10a40e647274c812239df30 548 Pfam PF13817 IS66 C-terminal element 496 533 1.7E-18 T 11-10-2018 IPR039552 Transposase IS66, C-terminal AMK58_13380 dfb6c923f10a40e647274c812239df30 548 Pfam PF13007 Transposase C of IS166 homeodomain 56 130 3.7E-15 T 11-10-2018 IPR024463 Transposase TnpC, homeodomain AMK58_13380 dfb6c923f10a40e647274c812239df30 548 Pfam PF03050 Transposase IS66 family 197 489 4.3E-101 T 11-10-2018 IPR004291 Transposase, IS66 AMK58_19605 5c27ba830850f311b7b7c60df3c86a60 164 SUPERFAMILY SSF50475 1 160 1.85E-47 T 11-10-2018 AMK58_19605 5c27ba830850f311b7b7c60df3c86a60 164 Gene3D G3DSA:2.30.110.10 1 163 5.8E-52 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 AMK58_19605 5c27ba830850f311b7b7c60df3c86a60 164 Pfam PF01613 Flavin reductase like domain 18 162 1.2E-36 T 11-10-2018 IPR002563 Flavin reductase like domain GO:0010181 AMK58_19605 5c27ba830850f311b7b7c60df3c86a60 164 SMART SM00903 17 162 9.0E-57 T 11-10-2018 IPR002563 Flavin reductase like domain GO:0010181 AMK58_22780 a160cdc23e3227cdbbf56e8d23ff159c 1012 Gene3D G3DSA:1.20.120.160 813 928 1.9E-19 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMK58_22780 a160cdc23e3227cdbbf56e8d23ff159c 1012 Pfam PF00072 Response regulator receiver domain 670 776 1.9E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_22780 a160cdc23e3227cdbbf56e8d23ff159c 1012 Pfam PF00072 Response regulator receiver domain 522 635 3.8E-15 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_22780 a160cdc23e3227cdbbf56e8d23ff159c 1012 SUPERFAMILY SSF47226 763 905 2.22E-18 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMK58_22780 a160cdc23e3227cdbbf56e8d23ff159c 1012 Pfam PF00512 His Kinase A (phospho-acceptor) domain 276 340 4.0E-19 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_22780 a160cdc23e3227cdbbf56e8d23ff159c 1012 SUPERFAMILY SSF55874 329 498 1.83E-40 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_22780 a160cdc23e3227cdbbf56e8d23ff159c 1012 Gene3D G3DSA:3.30.565.10 339 504 8.2E-48 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_22780 a160cdc23e3227cdbbf56e8d23ff159c 1012 SUPERFAMILY SSF52172 515 642 1.22E-23 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_22780 a160cdc23e3227cdbbf56e8d23ff159c 1012 SMART SM00388 275 340 1.3E-23 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_22780 a160cdc23e3227cdbbf56e8d23ff159c 1012 SUPERFAMILY SSF52172 667 785 3.13E-37 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_22780 a160cdc23e3227cdbbf56e8d23ff159c 1012 SMART SM00387 387 503 9.2E-36 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_22780 a160cdc23e3227cdbbf56e8d23ff159c 1012 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 387 501 1.0E-27 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_22780 a160cdc23e3227cdbbf56e8d23ff159c 1012 Gene3D G3DSA:3.40.50.2300 512 646 1.6E-23 T 11-10-2018 AMK58_22780 a160cdc23e3227cdbbf56e8d23ff159c 1012 SUPERFAMILY SSF47384 260 341 4.9E-21 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_22780 a160cdc23e3227cdbbf56e8d23ff159c 1012 SMART SM00073 825 923 8.1E-7 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMK58_22780 a160cdc23e3227cdbbf56e8d23ff159c 1012 Gene3D G3DSA:1.10.287.130 244 338 1.3E-28 T 11-10-2018 AMK58_22780 a160cdc23e3227cdbbf56e8d23ff159c 1012 Gene3D G3DSA:3.40.50.12740 667 797 6.2E-41 T 11-10-2018 AMK58_22780 a160cdc23e3227cdbbf56e8d23ff159c 1012 SMART SM00448 668 780 2.8E-33 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_22780 a160cdc23e3227cdbbf56e8d23ff159c 1012 SMART SM00448 519 637 3.7E-17 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_22780 a160cdc23e3227cdbbf56e8d23ff159c 1012 Pfam PF01627 Hpt domain 835 920 9.6E-12 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMK58_22780 a160cdc23e3227cdbbf56e8d23ff159c 1012 PRINTS PR00344 Bacterial sensor protein C-terminal signature 463 481 1.2E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_22780 a160cdc23e3227cdbbf56e8d23ff159c 1012 PRINTS PR00344 Bacterial sensor protein C-terminal signature 428 442 1.2E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_22780 a160cdc23e3227cdbbf56e8d23ff159c 1012 PRINTS PR00344 Bacterial sensor protein C-terminal signature 446 456 1.2E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_22780 a160cdc23e3227cdbbf56e8d23ff159c 1012 PRINTS PR00344 Bacterial sensor protein C-terminal signature 487 500 1.2E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_25505 2c552f2978b0991e8fcd8f191d7a0238 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 4.5E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_25505 2c552f2978b0991e8fcd8f191d7a0238 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 4.5E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_25505 2c552f2978b0991e8fcd8f191d7a0238 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 4.5E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_25505 2c552f2978b0991e8fcd8f191d7a0238 258 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMK58_25505 2c552f2978b0991e8fcd8f191d7a0238 258 SUPERFAMILY SSF51735 4 255 3.51E-74 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_25505 2c552f2978b0991e8fcd8f191d7a0238 258 Pfam PF00106 short chain dehydrogenase 5 196 6.9E-60 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_25505 2c552f2978b0991e8fcd8f191d7a0238 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 2.5E-44 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_25505 2c552f2978b0991e8fcd8f191d7a0238 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 2.5E-44 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_25505 2c552f2978b0991e8fcd8f191d7a0238 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 219 239 2.5E-44 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_25505 2c552f2978b0991e8fcd8f191d7a0238 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 2.5E-44 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_25505 2c552f2978b0991e8fcd8f191d7a0238 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 2.5E-44 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_25505 2c552f2978b0991e8fcd8f191d7a0238 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 2.5E-44 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_25505 2c552f2978b0991e8fcd8f191d7a0238 258 Gene3D G3DSA:3.40.50.720 3 258 3.2E-75 T 11-10-2018 AMK58_04090 93b5387bb0b7d80d2cb6ad4a2501fda5 566 Hamap MF_00572 2-isopropylmalate synthase [leuA]. 13 566 53.863 T 11-10-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMK58_04090 93b5387bb0b7d80d2cb6ad4a2501fda5 566 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 251 264 - T 11-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMK58_04090 93b5387bb0b7d80d2cb6ad4a2501fda5 566 SUPERFAMILY SSF110921 457 564 3.66E-36 T 11-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMK58_04090 93b5387bb0b7d80d2cb6ad4a2501fda5 566 SUPERFAMILY SSF89000 398 448 1.06E-15 T 11-10-2018 AMK58_04090 93b5387bb0b7d80d2cb6ad4a2501fda5 566 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 48 64 - T 11-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMK58_04090 93b5387bb0b7d80d2cb6ad4a2501fda5 566 Pfam PF08502 LeuA allosteric (dimerisation) domain 432 564 3.2E-30 T 11-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMK58_04090 93b5387bb0b7d80d2cb6ad4a2501fda5 566 SMART SM00917 432 565 1.8E-36 T 11-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMK58_04090 93b5387bb0b7d80d2cb6ad4a2501fda5 566 Gene3D G3DSA:3.30.160.270 387 564 6.5E-63 T 11-10-2018 AMK58_04090 93b5387bb0b7d80d2cb6ad4a2501fda5 566 Gene3D G3DSA:3.20.20.70 20 386 1.2E-150 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_04090 93b5387bb0b7d80d2cb6ad4a2501fda5 566 TIGRFAM TIGR00970 leuA_yeast: 2-isopropylmalate synthase 17 566 4.2E-240 T 11-10-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMK58_04090 93b5387bb0b7d80d2cb6ad4a2501fda5 566 SUPERFAMILY SSF51569 30 338 2.56E-98 T 11-10-2018 AMK58_04090 93b5387bb0b7d80d2cb6ad4a2501fda5 566 Pfam PF00682 HMGL-like 42 319 1.5E-75 T 11-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 AMK58_22210 9120f69c343a4e964a64049fbc4bc7b0 589 SUPERFAMILY SSF161098 337 586 1.83E-48 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_22210 9120f69c343a4e964a64049fbc4bc7b0 589 Gene3D G3DSA:1.10.3720.10 24 291 9.4E-51 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_22210 9120f69c343a4e964a64049fbc4bc7b0 589 Gene3D G3DSA:1.10.3720.10 333 588 2.9E-45 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_22210 9120f69c343a4e964a64049fbc4bc7b0 589 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 414 583 4.4E-11 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_22210 9120f69c343a4e964a64049fbc4bc7b0 589 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 119 281 4.4E-9 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_22210 9120f69c343a4e964a64049fbc4bc7b0 589 SUPERFAMILY SSF161098 22 285 4.06E-46 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_18830 8cfb6f6bf64042d0ecd9186f98b04367 178 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 6 160 5.0E-55 T 11-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 AMK58_18830 8cfb6f6bf64042d0ecd9186f98b04367 178 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 10 161 1.0E-56 T 11-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 AMK58_18830 8cfb6f6bf64042d0ecd9186f98b04367 178 PIRSF PIRSF028301 1 172 1.9E-59 T 11-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 AMK58_07380 48609c13e3205b176503f0999a0358b7 145 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 95 20.374 T 11-10-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMK58_07380 48609c13e3205b176503f0999a0358b7 145 Pfam PF01250 Ribosomal protein S6 4 92 4.9E-29 T 11-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_07380 48609c13e3205b176503f0999a0358b7 145 Gene3D G3DSA:3.30.70.60 1 101 1.2E-28 T 11-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 AMK58_07380 48609c13e3205b176503f0999a0358b7 145 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 94 4.5E-24 T 11-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_07380 48609c13e3205b176503f0999a0358b7 145 SUPERFAMILY SSF54995 1 104 1.01E-32 T 11-10-2018 IPR035980 Ribosomal protein S6 superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_21745 23000e10941d42d80420c4275c9d3136 435 SUPERFAMILY SSF103473 27 429 6.02E-37 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_21745 23000e10941d42d80420c4275c9d3136 435 Pfam PF07690 Major Facilitator Superfamily 67 397 5.8E-18 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMK58_21745 23000e10941d42d80420c4275c9d3136 435 ProSitePatterns PS00216 Sugar transport proteins signature 1. 308 325 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMK58_21745 23000e10941d42d80420c4275c9d3136 435 Gene3D G3DSA:1.20.1250.20 26 435 2.9E-36 T 11-10-2018 AMK58_11630 c56ef0713b7aa57fb1a8a2829ebdae8b 233 Gene3D G3DSA:3.40.50.300 1 233 7.1E-62 T 11-10-2018 AMK58_11630 c56ef0713b7aa57fb1a8a2829ebdae8b 233 SUPERFAMILY SSF52540 2 230 4.24E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_11630 c56ef0713b7aa57fb1a8a2829ebdae8b 233 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_11630 c56ef0713b7aa57fb1a8a2829ebdae8b 233 SMART SM00382 26 210 3.7E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_11630 c56ef0713b7aa57fb1a8a2829ebdae8b 233 Pfam PF00005 ABC transporter 19 161 8.1E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_01155 23ae503f3d3a4d0c6e58ecdc7d2ae739 144 Gene3D G3DSA:3.30.1490.190 85 138 1.3E-16 T 11-10-2018 AMK58_01155 23ae503f3d3a4d0c6e58ecdc7d2ae739 144 SUPERFAMILY SSF46785 4 132 5.94E-36 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_01155 23ae503f3d3a4d0c6e58ecdc7d2ae739 144 Gene3D G3DSA:1.10.10.10 1 83 2.2E-31 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_01155 23ae503f3d3a4d0c6e58ecdc7d2ae739 144 Pfam PF01475 Ferric uptake regulator family 11 130 8.6E-38 T 11-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 AMK58_12940 d6ec3189db5103a03128c7f3b2905e12 164 SUPERFAMILY SSF51316 25 152 6.28E-52 T 11-10-2018 IPR011057 Mss4-like superfamily AMK58_12940 d6ec3189db5103a03128c7f3b2905e12 164 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 26 146 1.0E-43 T 11-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 AMK58_12940 d6ec3189db5103a03128c7f3b2905e12 164 Gene3D G3DSA:2.170.150.20 20 162 1.2E-55 T 11-10-2018 AMK58_12940 d6ec3189db5103a03128c7f3b2905e12 164 Pfam PF01641 SelR domain 29 144 2.9E-45 T 11-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 AMK58_11445 371193a789664aa89730a8238a79733c 726 SUPERFAMILY SSF56042 188 414 1.32E-56 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMK58_11445 371193a789664aa89730a8238a79733c 726 TIGRFAM TIGR01736 FGAM_synth_II: phosphoribosylformylglycinamidine synthase II 7 717 1.1E-281 T 11-10-2018 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 AMK58_11445 371193a789664aa89730a8238a79733c 726 Pfam PF02769 AIR synthase related protein, C-terminal domain 191 343 1.0E-34 T 11-10-2018 IPR010918 PurM-like, C-terminal domain AMK58_11445 371193a789664aa89730a8238a79733c 726 Pfam PF02769 AIR synthase related protein, C-terminal domain 561 694 4.2E-19 T 11-10-2018 IPR010918 PurM-like, C-terminal domain AMK58_11445 371193a789664aa89730a8238a79733c 726 SUPERFAMILY SSF56042 558 696 1.17E-35 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMK58_11445 371193a789664aa89730a8238a79733c 726 Gene3D G3DSA:3.30.1330.10 33 181 9.6E-132 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMK58_11445 371193a789664aa89730a8238a79733c 726 SUPERFAMILY SSF55326 4 185 7.78E-51 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMK58_11445 371193a789664aa89730a8238a79733c 726 Gene3D G3DSA:3.30.1330.10 376 550 2.4E-56 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMK58_11445 371193a789664aa89730a8238a79733c 726 Pfam PF00586 AIR synthase related protein, N-terminal domain 430 546 1.8E-23 T 11-10-2018 IPR016188 PurM-like, N-terminal domain AMK58_11445 371193a789664aa89730a8238a79733c 726 Pfam PF00586 AIR synthase related protein, N-terminal domain 76 177 2.1E-23 T 11-10-2018 IPR016188 PurM-like, N-terminal domain AMK58_11445 371193a789664aa89730a8238a79733c 726 PIRSF PIRSF001587 1 723 4.8E-285 T 11-10-2018 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 AMK58_11445 371193a789664aa89730a8238a79733c 726 Gene3D G3DSA:3.90.650.10 555 720 1.3E-38 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMK58_11445 371193a789664aa89730a8238a79733c 726 Gene3D G3DSA:3.90.650.10 18 344 9.6E-132 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMK58_11445 371193a789664aa89730a8238a79733c 726 Hamap MF_00420 Phosphoribosylformylglycinamidine synthase subunit PurL [purL]. 1 726 319.366 T 11-10-2018 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 AMK58_11445 371193a789664aa89730a8238a79733c 726 SUPERFAMILY SSF55326 389 550 5.5E-52 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMK58_11250 56291a1fb1b827fb21eddb0468e607d9 771 SMART SM00487 214 447 6.0E-7 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMK58_11250 56291a1fb1b827fb21eddb0468e607d9 771 TIGRFAM TIGR01596 cas3_HD: CRISPR-associated endonuclease Cas3-HD 21 177 9.4E-26 T 11-10-2018 IPR006483 CRISPR-associated Cas3-type HD domain AMK58_11250 56291a1fb1b827fb21eddb0468e607d9 771 SUPERFAMILY SSF109604 21 176 7.85E-7 T 11-10-2018 AMK58_11250 56291a1fb1b827fb21eddb0468e607d9 771 Gene3D G3DSA:3.40.50.300 222 420 2.3E-14 T 11-10-2018 AMK58_11250 56291a1fb1b827fb21eddb0468e607d9 771 Gene3D G3DSA:3.40.50.300 424 604 1.7E-9 T 11-10-2018 AMK58_11250 56291a1fb1b827fb21eddb0468e607d9 771 SUPERFAMILY SSF52540 240 579 1.86E-29 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_11250 56291a1fb1b827fb21eddb0468e607d9 771 Pfam PF00270 DEAD/DEAH box helicase 243 414 2.2E-8 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMK58_11250 56291a1fb1b827fb21eddb0468e607d9 771 Gene3D G3DSA:1.10.3210.30 16 121 9.3E-8 T 11-10-2018 IPR038257 CRISPR-associated Cas3-type HD domain superfamily AMK58_12780 2e950c04d5c76d7b45a99a24132dcb17 202 Gene3D G3DSA:3.40.50.150 8 185 1.9E-17 T 11-10-2018 AMK58_12780 2e950c04d5c76d7b45a99a24132dcb17 202 Pfam PF07021 Methionine biosynthesis protein MetW 26 105 9.2E-5 T 11-10-2018 IPR010743 Methionine biosynthesis MetW KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344 AMK58_12780 2e950c04d5c76d7b45a99a24132dcb17 202 SUPERFAMILY SSF53335 15 175 1.42E-21 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_26035 24822a17b07752704ea03d22a23b6afc 399 Gene3D G3DSA:3.90.1700.10 234 387 4.9E-31 T 11-10-2018 AMK58_26035 24822a17b07752704ea03d22a23b6afc 399 Gene3D G3DSA:1.10.10.660 35 102 3.8E-49 T 11-10-2018 IPR024033 Uncharacterised domain superfamily, YlbE AMK58_26035 24822a17b07752704ea03d22a23b6afc 399 Pfam PF06545 Protein of unknown function (DUF1116) 82 285 4.2E-57 T 11-10-2018 IPR009499 Protein of unknown function DUF1116 AMK58_26035 24822a17b07752704ea03d22a23b6afc 399 Gene3D G3DSA:3.90.1710.10 103 226 3.8E-49 T 11-10-2018 AMK58_13125 dbae94a0779426c8d373a0a3eeddc0d6 415 SUPERFAMILY SSF51905 17 413 9.82E-45 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_13125 dbae94a0779426c8d373a0a3eeddc0d6 415 Pfam PF03486 HI0933-like protein 17 407 4.5E-104 T 11-10-2018 AMK58_13125 dbae94a0779426c8d373a0a3eeddc0d6 415 Gene3D G3DSA:1.10.8.260 284 338 4.9E-71 T 11-10-2018 IPR023166 HI0933-like insert domain superfamily AMK58_13125 dbae94a0779426c8d373a0a3eeddc0d6 415 TIGRFAM TIGR03862 flavo_PP4765: flavoprotein, TIGR03862 family 40 413 1.8E-147 T 11-10-2018 IPR022460 Conserved hyptotheical protein CHP03862, flavoprotein, PP4765 AMK58_13125 dbae94a0779426c8d373a0a3eeddc0d6 415 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 18 407 9.3E-89 T 11-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like AMK58_13125 dbae94a0779426c8d373a0a3eeddc0d6 415 Gene3D G3DSA:3.50.50.60 20 402 4.9E-71 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_13125 dbae94a0779426c8d373a0a3eeddc0d6 415 Gene3D G3DSA:2.40.30.10 205 355 4.9E-71 T 11-10-2018 AMK58_13125 dbae94a0779426c8d373a0a3eeddc0d6 415 SUPERFAMILY SSF160996 210 354 1.57E-13 T 11-10-2018 AMK58_13125 dbae94a0779426c8d373a0a3eeddc0d6 415 PRINTS PR00419 Adrenodoxin reductase family signature 40 53 1.6E-6 T 11-10-2018 AMK58_13125 dbae94a0779426c8d373a0a3eeddc0d6 415 PRINTS PR00419 Adrenodoxin reductase family signature 17 39 1.6E-6 T 11-10-2018 AMK58_24305 177a79ff0d22f9fa3ef77f4f46c31599 352 ProSitePatterns PS00211 ABC transporters family signature. 174 188 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_24305 177a79ff0d22f9fa3ef77f4f46c31599 352 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 252 340 9.8E-23 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMK58_24305 177a79ff0d22f9fa3ef77f4f46c31599 352 SMART SM00382 52 251 6.9E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_24305 177a79ff0d22f9fa3ef77f4f46c31599 352 Pfam PF00005 ABC transporter 44 201 3.0E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_24305 177a79ff0d22f9fa3ef77f4f46c31599 352 SUPERFAMILY SSF52540 24 273 2.77E-68 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_24305 177a79ff0d22f9fa3ef77f4f46c31599 352 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 253 314 6.2E-19 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMK58_24305 177a79ff0d22f9fa3ef77f4f46c31599 352 Gene3D G3DSA:3.40.50.300 22 351 6.0E-98 T 11-10-2018 AMK58_07700 5f1fd71b4e08adbc9680d34c16e0c54e 202 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 5 188 1.8E-40 T 11-10-2018 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 AMK58_07700 5f1fd71b4e08adbc9680d34c16e0c54e 202 ProSitePatterns PS00893 Nudix box signature. 88 109 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMK58_07700 5f1fd71b4e08adbc9680d34c16e0c54e 202 Gene3D G3DSA:3.90.79.10 1 200 1.2E-57 T 11-10-2018 AMK58_07700 5f1fd71b4e08adbc9680d34c16e0c54e 202 Pfam PF00293 NUDIX domain 47 170 9.9E-17 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMK58_07700 5f1fd71b4e08adbc9680d34c16e0c54e 202 SUPERFAMILY SSF55811 4 199 2.84E-42 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMK58_03260 00775d512fd70f46eae0df18adb66cb8 719 SUPERFAMILY SSF53300 536 708 4.61E-21 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMK58_03260 00775d512fd70f46eae0df18adb66cb8 719 Pfam PF13519 von Willebrand factor type A domain 537 643 1.2E-10 T 11-10-2018 IPR002035 von Willebrand factor, type A AMK58_03260 00775d512fd70f46eae0df18adb66cb8 719 Gene3D G3DSA:3.40.50.410 535 712 4.3E-30 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMK58_03260 00775d512fd70f46eae0df18adb66cb8 719 SMART SM00327 534 710 1.5E-14 T 11-10-2018 IPR002035 von Willebrand factor, type A AMK58_00775 913e13a5fc4b4767e280bf4c8f6b35cb 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 12 88 6.0E-29 T 11-10-2018 AMK58_00775 913e13a5fc4b4767e280bf4c8f6b35cb 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 11-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_00775 913e13a5fc4b4767e280bf4c8f6b35cb 89 Gene3D G3DSA:1.10.287.10 1 89 2.0E-36 T 11-10-2018 AMK58_00775 913e13a5fc4b4767e280bf4c8f6b35cb 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 6 89 4.0E-39 T 11-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_00775 913e13a5fc4b4767e280bf4c8f6b35cb 89 SMART SM01387 8 88 7.5E-52 T 11-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_00775 913e13a5fc4b4767e280bf4c8f6b35cb 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 23.208 T 11-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_00775 913e13a5fc4b4767e280bf4c8f6b35cb 89 SUPERFAMILY SSF47060 3 89 2.18E-36 T 11-10-2018 IPR009068 S15/NS1, RNA-binding AMK58_00775 913e13a5fc4b4767e280bf4c8f6b35cb 89 Pfam PF00312 Ribosomal protein S15 8 88 3.8E-38 T 11-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_15800 6d9f1e3c7a8f2b2d01d3e2001ecf5158 715 Pfam PF00512 His Kinase A (phospho-acceptor) domain 342 406 2.3E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_15800 6d9f1e3c7a8f2b2d01d3e2001ecf5158 715 Pfam PF00072 Response regulator receiver domain 592 703 1.1E-12 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_15800 6d9f1e3c7a8f2b2d01d3e2001ecf5158 715 SMART SM00388 341 406 5.4E-13 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_15800 6d9f1e3c7a8f2b2d01d3e2001ecf5158 715 SUPERFAMILY SSF52172 588 708 1.57E-22 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_15800 6d9f1e3c7a8f2b2d01d3e2001ecf5158 715 SUPERFAMILY SSF47384 327 406 3.53E-12 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_15800 6d9f1e3c7a8f2b2d01d3e2001ecf5158 715 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 451 559 1.5E-18 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_15800 6d9f1e3c7a8f2b2d01d3e2001ecf5158 715 PRINTS PR00344 Bacterial sensor protein C-terminal signature 486 500 4.7E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_15800 6d9f1e3c7a8f2b2d01d3e2001ecf5158 715 PRINTS PR00344 Bacterial sensor protein C-terminal signature 521 539 4.7E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_15800 6d9f1e3c7a8f2b2d01d3e2001ecf5158 715 PRINTS PR00344 Bacterial sensor protein C-terminal signature 504 514 4.7E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_15800 6d9f1e3c7a8f2b2d01d3e2001ecf5158 715 PRINTS PR00344 Bacterial sensor protein C-terminal signature 545 558 4.7E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_15800 6d9f1e3c7a8f2b2d01d3e2001ecf5158 715 SMART SM00387 450 561 1.5E-23 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_15800 6d9f1e3c7a8f2b2d01d3e2001ecf5158 715 Gene3D G3DSA:3.30.450.20 26 181 1.7E-23 T 11-10-2018 AMK58_15800 6d9f1e3c7a8f2b2d01d3e2001ecf5158 715 Gene3D G3DSA:1.10.287.130 305 404 3.5E-16 T 11-10-2018 AMK58_15800 6d9f1e3c7a8f2b2d01d3e2001ecf5158 715 SUPERFAMILY SSF55874 395 564 4.19E-39 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_15800 6d9f1e3c7a8f2b2d01d3e2001ecf5158 715 Gene3D G3DSA:3.40.50.2300 587 713 8.6E-19 T 11-10-2018 AMK58_15800 6d9f1e3c7a8f2b2d01d3e2001ecf5158 715 Gene3D G3DSA:3.30.565.10 416 562 1.7E-33 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_15800 6d9f1e3c7a8f2b2d01d3e2001ecf5158 715 SMART SM00448 590 704 2.4E-21 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_21720 17c255e0636315b9b9a4058c0a396da5 579 SUPERFAMILY SSF55785 144 259 3.66E-18 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_21720 17c255e0636315b9b9a4058c0a396da5 579 SUPERFAMILY SSF55785 258 385 3.32E-29 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_21720 17c255e0636315b9b9a4058c0a396da5 579 SMART SM00267 394 570 1.3E-59 T 11-10-2018 IPR000160 GGDEF domain AMK58_21720 17c255e0636315b9b9a4058c0a396da5 579 SMART SM00091 273 339 1.4E-5 T 11-10-2018 IPR000014 PAS domain AMK58_21720 17c255e0636315b9b9a4058c0a396da5 579 SMART SM00091 151 218 0.026 T 11-10-2018 IPR000014 PAS domain AMK58_21720 17c255e0636315b9b9a4058c0a396da5 579 Gene3D G3DSA:3.30.70.270 401 574 3.4E-56 T 11-10-2018 AMK58_21720 17c255e0636315b9b9a4058c0a396da5 579 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 272 393 2.1E-17 T 11-10-2018 IPR000014 PAS domain AMK58_21720 17c255e0636315b9b9a4058c0a396da5 579 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 149 268 1.2E-14 T 11-10-2018 IPR000014 PAS domain AMK58_21720 17c255e0636315b9b9a4058c0a396da5 579 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 403 567 1.5E-43 T 11-10-2018 IPR000160 GGDEF domain AMK58_21720 17c255e0636315b9b9a4058c0a396da5 579 Gene3D G3DSA:3.30.450.20 266 400 6.2E-29 T 11-10-2018 AMK58_21720 17c255e0636315b9b9a4058c0a396da5 579 SMART SM00086 219 261 0.079 T 11-10-2018 IPR001610 PAC motif AMK58_21720 17c255e0636315b9b9a4058c0a396da5 579 SMART SM00086 345 387 0.01 T 11-10-2018 IPR001610 PAC motif AMK58_21720 17c255e0636315b9b9a4058c0a396da5 579 SUPERFAMILY SSF55073 410 571 2.2E-47 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_21720 17c255e0636315b9b9a4058c0a396da5 579 Gene3D G3DSA:3.30.450.20 141 265 4.6E-19 T 11-10-2018 AMK58_21720 17c255e0636315b9b9a4058c0a396da5 579 Pfam PF00990 Diguanylate cyclase, GGDEF domain 405 565 1.1E-47 T 11-10-2018 IPR000160 GGDEF domain AMK58_21720 17c255e0636315b9b9a4058c0a396da5 579 Pfam PF08448 PAS fold 158 263 5.4E-15 T 11-10-2018 IPR013656 PAS fold-4 AMK58_21720 17c255e0636315b9b9a4058c0a396da5 579 Pfam PF08448 PAS fold 280 388 2.3E-20 T 11-10-2018 IPR013656 PAS fold-4 AMK58_09145 53d0b62bdf3c9c4f5e75dee00523a26c 591 SUPERFAMILY SSF47384 357 437 1.16E-13 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_09145 53d0b62bdf3c9c4f5e75dee00523a26c 591 SMART SM00387 481 591 1.0E-29 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_09145 53d0b62bdf3c9c4f5e75dee00523a26c 591 PRINTS PR00344 Bacterial sensor protein C-terminal signature 575 588 3.6E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_09145 53d0b62bdf3c9c4f5e75dee00523a26c 591 PRINTS PR00344 Bacterial sensor protein C-terminal signature 518 532 3.6E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_09145 53d0b62bdf3c9c4f5e75dee00523a26c 591 PRINTS PR00344 Bacterial sensor protein C-terminal signature 551 569 3.6E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_09145 53d0b62bdf3c9c4f5e75dee00523a26c 591 Pfam PF11849 Domain of unknown function (DUF3369) 157 325 3.4E-42 T 11-10-2018 IPR021800 Domain of unknown function DUF3369 AMK58_09145 53d0b62bdf3c9c4f5e75dee00523a26c 591 SUPERFAMILY SSF55874 429 589 3.67E-37 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_09145 53d0b62bdf3c9c4f5e75dee00523a26c 591 Gene3D G3DSA:3.40.50.2300 27 176 5.2E-12 T 11-10-2018 AMK58_09145 53d0b62bdf3c9c4f5e75dee00523a26c 591 Gene3D G3DSA:3.30.565.10 442 591 1.0E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_09145 53d0b62bdf3c9c4f5e75dee00523a26c 591 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 486 589 5.3E-19 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_09145 53d0b62bdf3c9c4f5e75dee00523a26c 591 Pfam PF00512 His Kinase A (phospho-acceptor) domain 371 437 1.8E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_09145 53d0b62bdf3c9c4f5e75dee00523a26c 591 Pfam PF00072 Response regulator receiver domain 37 146 6.6E-6 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_09145 53d0b62bdf3c9c4f5e75dee00523a26c 591 Gene3D G3DSA:1.10.287.130 329 435 1.5E-14 T 11-10-2018 AMK58_09145 53d0b62bdf3c9c4f5e75dee00523a26c 591 SMART SM00388 370 437 1.8E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_09145 53d0b62bdf3c9c4f5e75dee00523a26c 591 SUPERFAMILY SSF52172 34 182 1.85E-12 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_06030 26d592557f8b6fec581271eb2687c0ac 151 Pfam PF01575 MaoC like domain 11 122 9.9E-21 T 11-10-2018 IPR002539 MaoC-like dehydratase domain AMK58_06030 26d592557f8b6fec581271eb2687c0ac 151 Gene3D G3DSA:3.10.129.10 1 146 4.0E-47 T 11-10-2018 AMK58_06030 26d592557f8b6fec581271eb2687c0ac 151 SUPERFAMILY SSF54637 2 146 5.1E-37 T 11-10-2018 IPR029069 HotDog domain superfamily AMK58_17365 d1dad8a757a679413f01052b2d552ec7 1040 Gene3D G3DSA:3.30.70.1430 559 651 0.0 T 11-10-2018 AMK58_17365 d1dad8a757a679413f01052b2d552ec7 1040 Gene3D G3DSA:3.30.70.1320 135 326 0.0 T 11-10-2018 AMK58_17365 d1dad8a757a679413f01052b2d552ec7 1040 SUPERFAMILY SSF82866 290 489 3.53E-48 T 11-10-2018 AMK58_17365 d1dad8a757a679413f01052b2d552ec7 1040 SUPERFAMILY SSF82714 183 266 2.09E-16 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_17365 d1dad8a757a679413f01052b2d552ec7 1040 SUPERFAMILY SSF82693 557 652 2.12E-13 T 11-10-2018 AMK58_17365 d1dad8a757a679413f01052b2d552ec7 1040 SUPERFAMILY SSF82714 705 791 2.49E-19 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_17365 d1dad8a757a679413f01052b2d552ec7 1040 Gene3D G3DSA:1.20.1640.10 505 1008 0.0 T 11-10-2018 AMK58_17365 d1dad8a757a679413f01052b2d552ec7 1040 Gene3D G3DSA:3.30.70.1430 40 800 0.0 T 11-10-2018 AMK58_17365 d1dad8a757a679413f01052b2d552ec7 1040 SUPERFAMILY SSF82693 136 324 5.75E-24 T 11-10-2018 AMK58_17365 d1dad8a757a679413f01052b2d552ec7 1040 SUPERFAMILY SSF82693 40 132 8.89E-23 T 11-10-2018 AMK58_17365 d1dad8a757a679413f01052b2d552ec7 1040 Gene3D G3DSA:3.30.2090.10 704 792 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_17365 d1dad8a757a679413f01052b2d552ec7 1040 Gene3D G3DSA:1.20.1640.10 10 504 0.0 T 11-10-2018 AMK58_17365 d1dad8a757a679413f01052b2d552ec7 1040 Gene3D G3DSA:3.30.70.1440 652 850 0.0 T 11-10-2018 AMK58_17365 d1dad8a757a679413f01052b2d552ec7 1040 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 1.7E-73 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_17365 d1dad8a757a679413f01052b2d552ec7 1040 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.7E-73 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_17365 d1dad8a757a679413f01052b2d552ec7 1040 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 1.7E-73 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_17365 d1dad8a757a679413f01052b2d552ec7 1040 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.7E-73 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_17365 d1dad8a757a679413f01052b2d552ec7 1040 PRINTS PR00702 Acriflavin resistance protein family signature 544 561 1.7E-73 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_17365 d1dad8a757a679413f01052b2d552ec7 1040 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 1.7E-73 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_17365 d1dad8a757a679413f01052b2d552ec7 1040 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 1.7E-73 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_17365 d1dad8a757a679413f01052b2d552ec7 1040 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 1.7E-73 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_17365 d1dad8a757a679413f01052b2d552ec7 1040 PRINTS PR00702 Acriflavin resistance protein family signature 609 623 1.7E-73 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_17365 d1dad8a757a679413f01052b2d552ec7 1040 Pfam PF00873 AcrB/AcrD/AcrF family 4 1011 0.0 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_17365 d1dad8a757a679413f01052b2d552ec7 1040 SUPERFAMILY SSF82866 789 1013 2.35E-47 T 11-10-2018 AMK58_17365 d1dad8a757a679413f01052b2d552ec7 1040 Gene3D G3DSA:3.30.2090.10 179 269 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_14555 50fb5e90b45e74fbb6f4189952a6155e 730 Gene3D G3DSA:3.30.365.10 161 381 1.7E-60 T 11-10-2018 AMK58_14555 50fb5e90b45e74fbb6f4189952a6155e 730 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 159 666 6.2E-123 T 11-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMK58_14555 50fb5e90b45e74fbb6f4189952a6155e 730 SUPERFAMILY SSF56003 147 726 6.02E-164 T 11-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 AMK58_14555 50fb5e90b45e74fbb6f4189952a6155e 730 Gene3D G3DSA:3.30.365.10 185 277 1.7E-60 T 11-10-2018 AMK58_14555 50fb5e90b45e74fbb6f4189952a6155e 730 SMART SM01008 32 138 3.5E-26 T 11-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMK58_14555 50fb5e90b45e74fbb6f4189952a6155e 730 Gene3D G3DSA:3.90.1170.50 3 137 3.3E-25 T 11-10-2018 AMK58_14555 50fb5e90b45e74fbb6f4189952a6155e 730 SUPERFAMILY SSF54665 6 137 6.67E-32 T 11-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily AMK58_14555 50fb5e90b45e74fbb6f4189952a6155e 730 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 36 136 6.7E-21 T 11-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMK58_14555 50fb5e90b45e74fbb6f4189952a6155e 730 Gene3D G3DSA:3.30.365.20 399 728 1.3E-79 T 11-10-2018 AMK58_04225 267142c8d4db1d6dd313073c3d073bc8 447 SUPERFAMILY SSF52440 1 113 2.23E-49 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMK58_04225 267142c8d4db1d6dd313073c3d073bc8 447 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 285 292 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMK58_04225 267142c8d4db1d6dd313073c3d073bc8 447 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 320 1.6E-80 T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMK58_04225 267142c8d4db1d6dd313073c3d073bc8 447 SUPERFAMILY SSF51246 330 443 3.19E-40 T 11-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AMK58_04225 267142c8d4db1d6dd313073c3d073bc8 447 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 153 167 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMK58_04225 267142c8d4db1d6dd313073c3d073bc8 447 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 445 4.2E-216 T 11-10-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 AMK58_04225 267142c8d4db1d6dd313073c3d073bc8 447 Gene3D G3DSA:3.30.470.130 1 445 6.6E-187 T 11-10-2018 AMK58_04225 267142c8d4db1d6dd313073c3d073bc8 447 SMART SM00878 335 440 4.0E-59 T 11-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMK58_04225 267142c8d4db1d6dd313073c3d073bc8 447 SUPERFAMILY SSF56059 83 345 4.24E-71 T 11-10-2018 AMK58_04225 267142c8d4db1d6dd313073c3d073bc8 447 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 1.8E-46 T 11-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMK58_04225 267142c8d4db1d6dd313073c3d073bc8 447 Pfam PF02785 Biotin carboxylase C-terminal domain 335 441 5.0E-37 T 11-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMK58_25140 3742efab6eac2be9aec070811c848492 124 SUPERFAMILY SSF52172 8 122 2.85E-25 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_25140 3742efab6eac2be9aec070811c848492 124 Pfam PF00072 Response regulator receiver domain 11 117 5.7E-18 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_25140 3742efab6eac2be9aec070811c848492 124 SMART SM00448 9 117 2.0E-13 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_25140 3742efab6eac2be9aec070811c848492 124 Gene3D G3DSA:3.40.50.2300 2 123 7.9E-24 T 11-10-2018 AMK58_27790 57a343945031f16f54bc2023abfc9c2c 233 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 229 1.6E-47 T 11-10-2018 AMK58_27790 57a343945031f16f54bc2023abfc9c2c 233 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 2.1E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_27790 57a343945031f16f54bc2023abfc9c2c 233 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 2.1E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_27790 57a343945031f16f54bc2023abfc9c2c 233 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 2.1E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_27790 57a343945031f16f54bc2023abfc9c2c 233 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 193 213 2.1E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_27790 57a343945031f16f54bc2023abfc9c2c 233 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 2.1E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_27790 57a343945031f16f54bc2023abfc9c2c 233 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 2.1E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_27790 57a343945031f16f54bc2023abfc9c2c 233 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 73 84 3.3E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_27790 57a343945031f16f54bc2023abfc9c2c 233 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 134 3.3E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_27790 57a343945031f16f54bc2023abfc9c2c 233 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 165 3.3E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_27790 57a343945031f16f54bc2023abfc9c2c 233 SUPERFAMILY SSF51735 3 230 4.89E-62 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_27790 57a343945031f16f54bc2023abfc9c2c 233 Gene3D G3DSA:3.40.50.720 1 232 7.0E-68 T 11-10-2018 AMK58_24925 57a343945031f16f54bc2023abfc9c2c 233 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 229 1.6E-47 T 11-10-2018 AMK58_24925 57a343945031f16f54bc2023abfc9c2c 233 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 2.1E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_24925 57a343945031f16f54bc2023abfc9c2c 233 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 2.1E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_24925 57a343945031f16f54bc2023abfc9c2c 233 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 2.1E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_24925 57a343945031f16f54bc2023abfc9c2c 233 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 193 213 2.1E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_24925 57a343945031f16f54bc2023abfc9c2c 233 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 2.1E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_24925 57a343945031f16f54bc2023abfc9c2c 233 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 2.1E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_24925 57a343945031f16f54bc2023abfc9c2c 233 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 73 84 3.3E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_24925 57a343945031f16f54bc2023abfc9c2c 233 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 134 3.3E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_24925 57a343945031f16f54bc2023abfc9c2c 233 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 165 3.3E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_24925 57a343945031f16f54bc2023abfc9c2c 233 SUPERFAMILY SSF51735 3 230 4.89E-62 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_24925 57a343945031f16f54bc2023abfc9c2c 233 Gene3D G3DSA:3.40.50.720 1 232 7.0E-68 T 11-10-2018 AMK58_06310 b16cd1011a04ad41b1e221b039c2411f 262 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 5 254 2.8E-104 T 11-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 AMK58_06310 b16cd1011a04ad41b1e221b039c2411f 262 Gene3D G3DSA:2.160.10.10 1 192 1.8E-51 T 11-10-2018 AMK58_06310 b16cd1011a04ad41b1e221b039c2411f 262 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 132 160 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AMK58_06310 b16cd1011a04ad41b1e221b039c2411f 262 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 2 258 43.995 T 11-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 AMK58_06310 b16cd1011a04ad41b1e221b039c2411f 262 Gene3D G3DSA:1.20.1180.10 195 261 7.0E-14 T 11-10-2018 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily KEGG: 00540+2.3.1.129 AMK58_06310 b16cd1011a04ad41b1e221b039c2411f 262 PIRSF PIRSF000456 1 261 2.8E-107 T 11-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 AMK58_06310 b16cd1011a04ad41b1e221b039c2411f 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 15 49 2.2E-7 T 11-10-2018 IPR001451 Hexapeptide repeat AMK58_06310 b16cd1011a04ad41b1e221b039c2411f 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 106 140 2.0E-5 T 11-10-2018 IPR001451 Hexapeptide repeat AMK58_06310 b16cd1011a04ad41b1e221b039c2411f 262 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 17 45 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AMK58_06310 b16cd1011a04ad41b1e221b039c2411f 262 SUPERFAMILY SSF51161 3 251 1.6E-73 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily AMK58_06310 b16cd1011a04ad41b1e221b039c2411f 262 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 177 254 1.3E-22 T 11-10-2018 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00540+2.3.1.129 AMK58_22660 66e9e5755ca90bee19b2bc81327e7ccc 287 Gene3D G3DSA:3.40.50.450 27 264 3.8E-57 T 11-10-2018 AMK58_22660 66e9e5755ca90bee19b2bc81327e7ccc 287 Pfam PF03641 Possible lysine decarboxylase 131 260 1.3E-29 T 11-10-2018 IPR031100 LOG family AMK58_22660 66e9e5755ca90bee19b2bc81327e7ccc 287 SUPERFAMILY SSF102405 20 261 1.27E-48 T 11-10-2018 AMK58_16425 af607ae3d4d32bca2868e222fe799353 954 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 301 310 9.1E-35 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMK58_16425 af607ae3d4d32bca2868e222fe799353 954 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 486 500 9.1E-35 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMK58_16425 af607ae3d4d32bca2868e222fe799353 954 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 167 185 9.1E-35 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMK58_16425 af607ae3d4d32bca2868e222fe799353 954 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 78 91 9.1E-35 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMK58_16425 af607ae3d4d32bca2868e222fe799353 954 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 379 395 9.1E-35 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMK58_16425 af607ae3d4d32bca2868e222fe799353 954 Gene3D G3DSA:1.10.460.10 143 563 5.2E-168 T 11-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 AMK58_16425 af607ae3d4d32bca2868e222fe799353 954 Gene3D G3DSA:3.40.50.140 3 139 1.0E-48 T 11-10-2018 AMK58_16425 af607ae3d4d32bca2868e222fe799353 954 Pfam PF01751 Toprim domain 6 118 8.9E-26 T 11-10-2018 IPR006171 TOPRIM domain AMK58_16425 af607ae3d4d32bca2868e222fe799353 954 Gene3D G3DSA:3.30.65.10 610 651 5.1E-5 T 11-10-2018 AMK58_16425 af607ae3d4d32bca2868e222fe799353 954 SUPERFAMILY SSF56712 5 617 2.09E-185 T 11-10-2018 IPR023405 DNA topoisomerase, type IA, core domain AMK58_16425 af607ae3d4d32bca2868e222fe799353 954 Gene3D G3DSA:2.70.20.10 189 470 5.2E-168 T 11-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 AMK58_16425 af607ae3d4d32bca2868e222fe799353 954 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 7 643 2.3E-237 T 11-10-2018 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 AMK58_16425 af607ae3d4d32bca2868e222fe799353 954 Hamap MF_00952 DNA topoisomerase 1 [topA]. 4 774 54.74 T 11-10-2018 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 AMK58_16425 af607ae3d4d32bca2868e222fe799353 954 SMART SM00436 109 197 1.1E-41 T 11-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 AMK58_16425 af607ae3d4d32bca2868e222fe799353 954 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 610 644 9.1E-12 T 11-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 AMK58_16425 af607ae3d4d32bca2868e222fe799353 954 Gene3D G3DSA:1.10.290.10 259 394 5.2E-168 T 11-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 AMK58_16425 af607ae3d4d32bca2868e222fe799353 954 Pfam PF13368 Topoisomerase C-terminal repeat 664 749 9.6E-12 T 11-10-2018 IPR025589 Topoisomerase C-terminal repeat AMK58_16425 af607ae3d4d32bca2868e222fe799353 954 Pfam PF13368 Topoisomerase C-terminal repeat 815 867 1.3E-21 T 11-10-2018 IPR025589 Topoisomerase C-terminal repeat AMK58_16425 af607ae3d4d32bca2868e222fe799353 954 Pfam PF13368 Topoisomerase C-terminal repeat 753 805 4.1E-18 T 11-10-2018 IPR025589 Topoisomerase C-terminal repeat AMK58_16425 af607ae3d4d32bca2868e222fe799353 954 Pfam PF01131 DNA topoisomerase 134 560 1.1E-125 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMK58_16425 af607ae3d4d32bca2868e222fe799353 954 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 288 310 - T 11-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 AMK58_16425 af607ae3d4d32bca2868e222fe799353 954 SUPERFAMILY SSF57783 608 647 5.1E-9 T 11-10-2018 AMK58_16425 af607ae3d4d32bca2868e222fe799353 954 SMART SM00437 251 523 6.0E-121 T 11-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 AMK58_16425 af607ae3d4d32bca2868e222fe799353 954 SMART SM00493 4 104 3.4E-29 T 11-10-2018 IPR006171 TOPRIM domain AMK58_08005 85ac312dec870fb6da06896b25f59ff7 1327 Pfam PF00501 AMP-binding enzyme 14 404 7.8E-96 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMK58_08005 85ac312dec870fb6da06896b25f59ff7 1327 Gene3D G3DSA:3.40.50.12780 5 396 1.8E-125 T 11-10-2018 AMK58_08005 85ac312dec870fb6da06896b25f59ff7 1327 Pfam PF13193 AMP-binding enzyme C-terminal domain 412 486 1.4E-11 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMK58_08005 85ac312dec870fb6da06896b25f59ff7 1327 Gene3D G3DSA:1.10.1200.10 502 587 6.3E-14 T 11-10-2018 IPR036736 ACP-like superfamily AMK58_08005 85ac312dec870fb6da06896b25f59ff7 1327 TIGRFAM TIGR02353 NRPS_term_dom: non-ribosomal peptide synthetase terminal domain of unknown function 615 1309 1.0E-182 T 11-10-2018 IPR012728 Non-ribosomal peptide synthetase, C-terminal AMK58_08005 85ac312dec870fb6da06896b25f59ff7 1327 Gene3D G3DSA:2.160.10.10 1210 1326 8.2E-13 T 11-10-2018 AMK58_08005 85ac312dec870fb6da06896b25f59ff7 1327 Gene3D G3DSA:2.160.10.10 722 836 6.7E-11 T 11-10-2018 AMK58_08005 85ac312dec870fb6da06896b25f59ff7 1327 SUPERFAMILY SSF51161 1154 1312 2.36E-17 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily AMK58_08005 85ac312dec870fb6da06896b25f59ff7 1327 SUPERFAMILY SSF51161 959 1078 3.6E-15 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily AMK58_08005 85ac312dec870fb6da06896b25f59ff7 1327 SUPERFAMILY SSF56801 9 521 1.57E-148 T 11-10-2018 AMK58_08005 85ac312dec870fb6da06896b25f59ff7 1327 Pfam PF00550 Phosphopantetheine attachment site 526 581 1.2E-5 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain AMK58_08005 85ac312dec870fb6da06896b25f59ff7 1327 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 35 428 2.2E-124 T 11-10-2018 IPR010071 Amino acid adenylation domain AMK58_08005 85ac312dec870fb6da06896b25f59ff7 1327 Gene3D G3DSA:3.30.300.30 397 501 7.1E-32 T 11-10-2018 AMK58_08005 85ac312dec870fb6da06896b25f59ff7 1327 Gene3D G3DSA:2.160.10.10 931 1079 1.8E-7 T 11-10-2018 AMK58_08005 85ac312dec870fb6da06896b25f59ff7 1327 SUPERFAMILY SSF51161 712 834 1.05E-13 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily AMK58_08005 85ac312dec870fb6da06896b25f59ff7 1327 SUPERFAMILY SSF47336 508 581 5.37E-9 T 11-10-2018 IPR036736 ACP-like superfamily AMK58_12870 46b19cb947db2c36ddff2d6804194601 642 Pfam PF00570 HRDC domain 572 638 7.9E-22 T 11-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 AMK58_12870 46b19cb947db2c36ddff2d6804194601 642 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 25 475 1.7E-153 T 11-10-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 AMK58_12870 46b19cb947db2c36ddff2d6804194601 642 SUPERFAMILY SSF52540 218 465 1.46E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_12870 46b19cb947db2c36ddff2d6804194601 642 Gene3D G3DSA:3.40.50.300 16 218 2.4E-81 T 11-10-2018 AMK58_12870 46b19cb947db2c36ddff2d6804194601 642 SMART SM00490 261 342 1.1E-26 T 11-10-2018 IPR001650 Helicase, C-terminal AMK58_12870 46b19cb947db2c36ddff2d6804194601 642 Pfam PF00270 DEAD/DEAH box helicase 40 197 1.4E-17 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMK58_12870 46b19cb947db2c36ddff2d6804194601 642 SMART SM00956 423 526 2.9E-52 T 11-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 AMK58_12870 46b19cb947db2c36ddff2d6804194601 642 SUPERFAMILY SSF52540 22 207 1.09E-42 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_12870 46b19cb947db2c36ddff2d6804194601 642 Pfam PF09382 RQC domain 418 527 9.2E-40 T 11-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 AMK58_12870 46b19cb947db2c36ddff2d6804194601 642 Gene3D G3DSA:3.40.50.300 219 351 1.0E-40 T 11-10-2018 AMK58_12870 46b19cb947db2c36ddff2d6804194601 642 Gene3D G3DSA:1.10.150.80 567 641 1.2E-22 T 11-10-2018 AMK58_12870 46b19cb947db2c36ddff2d6804194601 642 Gene3D G3DSA:1.10.10.10 352 537 1.8E-51 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_12870 46b19cb947db2c36ddff2d6804194601 642 SUPERFAMILY SSF47819 566 640 9.59E-23 T 11-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 AMK58_12870 46b19cb947db2c36ddff2d6804194601 642 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 25 640 1.4E-240 T 11-10-2018 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 AMK58_12870 46b19cb947db2c36ddff2d6804194601 642 Pfam PF00271 Helicase conserved C-terminal domain 236 341 2.3E-16 T 11-10-2018 IPR001650 Helicase, C-terminal AMK58_12870 46b19cb947db2c36ddff2d6804194601 642 SMART SM00487 32 228 4.6E-29 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMK58_12870 46b19cb947db2c36ddff2d6804194601 642 SMART SM00341 568 641 3.9E-14 T 11-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 AMK58_12870 46b19cb947db2c36ddff2d6804194601 642 Pfam PF16124 RecQ zinc-binding 354 416 9.9E-20 T 11-10-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain AMK58_17990 766397595be66ada20c34feccf07d3bb 459 Pfam PF13429 Tetratricopeptide repeat 129 220 3.1E-8 T 11-10-2018 AMK58_17990 766397595be66ada20c34feccf07d3bb 459 SUPERFAMILY SSF53335 249 440 5.48E-29 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_17990 766397595be66ada20c34feccf07d3bb 459 SMART SM00028 194 227 30.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_17990 766397595be66ada20c34feccf07d3bb 459 SMART SM00028 126 159 2.2 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_17990 766397595be66ada20c34feccf07d3bb 459 SMART SM00028 58 91 32.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_17990 766397595be66ada20c34feccf07d3bb 459 Gene3D G3DSA:3.40.50.150 251 442 6.4E-25 T 11-10-2018 AMK58_17990 766397595be66ada20c34feccf07d3bb 459 SUPERFAMILY SSF48452 25 226 1.74E-23 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_17990 766397595be66ada20c34feccf07d3bb 459 Gene3D G3DSA:1.25.40.10 22 109 5.5E-10 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_17990 766397595be66ada20c34feccf07d3bb 459 Pfam PF13847 Methyltransferase domain 294 395 3.4E-11 T 11-10-2018 IPR025714 Methyltransferase domain AMK58_17990 766397595be66ada20c34feccf07d3bb 459 Gene3D G3DSA:1.25.40.10 110 250 2.2E-15 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_09555 6b91665759963a9efd037323944dddd8 144 SUPERFAMILY SSF88946 1 57 4.32E-15 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMK58_09555 6b91665759963a9efd037323944dddd8 144 Gene3D G3DSA:1.10.10.10 74 138 2.2E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_09555 6b91665759963a9efd037323944dddd8 144 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 4 134 3.8E-20 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMK58_09555 6b91665759963a9efd037323944dddd8 144 Pfam PF04542 Sigma-70 region 2 1 52 3.2E-11 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMK58_09555 6b91665759963a9efd037323944dddd8 144 Pfam PF08281 Sigma-70, region 4 79 131 1.1E-17 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMK58_09555 6b91665759963a9efd037323944dddd8 144 Gene3D G3DSA:1.10.1740.10 1 54 7.5E-15 T 11-10-2018 AMK58_09555 6b91665759963a9efd037323944dddd8 144 SUPERFAMILY SSF88659 75 136 1.46E-17 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMK58_09255 8d752e1bce331c25a05b75416d1d252f 385 Gene3D G3DSA:3.30.1150.10 233 384 1.2E-16 T 11-10-2018 AMK58_09255 8d752e1bce331c25a05b75416d1d252f 385 PRINTS PR01217 Proline rich extensin signature 48 69 1.9E-12 T 11-10-2018 AMK58_09255 8d752e1bce331c25a05b75416d1d252f 385 PRINTS PR01217 Proline rich extensin signature 108 133 1.9E-12 T 11-10-2018 AMK58_09255 8d752e1bce331c25a05b75416d1d252f 385 PRINTS PR01217 Proline rich extensin signature 87 104 1.9E-12 T 11-10-2018 AMK58_09255 8d752e1bce331c25a05b75416d1d252f 385 PRINTS PR01217 Proline rich extensin signature 69 85 1.9E-12 T 11-10-2018 AMK58_09255 8d752e1bce331c25a05b75416d1d252f 385 SUPERFAMILY SSF74653 284 381 1.33E-5 T 11-10-2018 AMK58_04635 e7e6c8e26e53f7dc7c72b052fc820908 495 Gene3D G3DSA:3.30.450.20 131 273 6.6E-23 T 11-10-2018 AMK58_04635 e7e6c8e26e53f7dc7c72b052fc820908 495 Pfam PF08447 PAS fold 159 244 1.1E-13 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 AMK58_04635 e7e6c8e26e53f7dc7c72b052fc820908 495 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 143 253 5.5E-13 T 11-10-2018 IPR000014 PAS domain AMK58_04635 e7e6c8e26e53f7dc7c72b052fc820908 495 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 19 130 2.4E-17 T 11-10-2018 IPR000014 PAS domain AMK58_04635 e7e6c8e26e53f7dc7c72b052fc820908 495 Gene3D G3DSA:1.10.287.950 279 495 2.7E-38 T 11-10-2018 AMK58_04635 e7e6c8e26e53f7dc7c72b052fc820908 495 Gene3D G3DSA:3.30.450.20 18 129 1.6E-20 T 11-10-2018 AMK58_04635 e7e6c8e26e53f7dc7c72b052fc820908 495 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 318 481 3.1E-29 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_04635 e7e6c8e26e53f7dc7c72b052fc820908 495 SMART SM00086 87 129 4.2E-4 T 11-10-2018 IPR001610 PAC motif AMK58_04635 e7e6c8e26e53f7dc7c72b052fc820908 495 SMART SM00086 209 251 7.6E-4 T 11-10-2018 IPR001610 PAC motif AMK58_04635 e7e6c8e26e53f7dc7c72b052fc820908 495 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 381 410 2.0E-8 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_04635 e7e6c8e26e53f7dc7c72b052fc820908 495 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 282 311 2.0E-8 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_04635 e7e6c8e26e53f7dc7c72b052fc820908 495 SUPERFAMILY SSF55785 25 129 3.14E-23 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_04635 e7e6c8e26e53f7dc7c72b052fc820908 495 SMART SM00283 268 494 8.7E-23 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_04635 e7e6c8e26e53f7dc7c72b052fc820908 495 Pfam PF13426 PAS domain 25 128 6.7E-13 T 11-10-2018 IPR000014 PAS domain AMK58_04635 e7e6c8e26e53f7dc7c72b052fc820908 495 SUPERFAMILY SSF55785 146 253 1.1E-23 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_04635 e7e6c8e26e53f7dc7c72b052fc820908 495 SUPERFAMILY SSF58104 260 493 2.09E-45 T 11-10-2018 AMK58_21025 e82d67e513f6f50116c5aa84da411fe6 378 Pfam PF04551 GcpE protein 16 357 3.0E-132 T 11-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 AMK58_21025 e82d67e513f6f50116c5aa84da411fe6 378 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 12 356 3.7E-138 T 11-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 AMK58_21025 e82d67e513f6f50116c5aa84da411fe6 378 PIRSF PIRSF004640 4 367 2.6E-148 T 11-10-2018 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 AMK58_21025 e82d67e513f6f50116c5aa84da411fe6 378 SUPERFAMILY SSF56014 269 352 2.06E-13 T 11-10-2018 AMK58_21025 e82d67e513f6f50116c5aa84da411fe6 378 SUPERFAMILY SSF51366 25 146 5.18E-8 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AMK58_21025 e82d67e513f6f50116c5aa84da411fe6 378 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 10 361 33.685 T 11-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 AMK58_21025 e82d67e513f6f50116c5aa84da411fe6 378 Gene3D G3DSA:3.20.20.20 2 264 1.4E-105 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMK58_21025 e82d67e513f6f50116c5aa84da411fe6 378 Gene3D G3DSA:3.30.413.10 265 366 4.7E-26 T 11-10-2018 AMK58_22120 373ffe340413ea3d1dc59cc2968297ce 409 Gene3D G3DSA:1.20.1250.20 2 184 8.8E-19 T 11-10-2018 AMK58_22120 373ffe340413ea3d1dc59cc2968297ce 409 Pfam PF07690 Major Facilitator Superfamily 14 342 2.0E-30 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMK58_22120 373ffe340413ea3d1dc59cc2968297ce 409 Gene3D G3DSA:1.20.1250.20 205 392 2.1E-14 T 11-10-2018 AMK58_22120 373ffe340413ea3d1dc59cc2968297ce 409 SUPERFAMILY SSF103473 5 392 1.83E-43 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_16560 cb98a00d95a1d45a55d68374686a5755 312 Pfam PF00571 CBS domain 266 307 8.1E-5 T 11-10-2018 IPR000644 CBS domain AMK58_16560 cb98a00d95a1d45a55d68374686a5755 312 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_16560 cb98a00d95a1d45a55d68374686a5755 312 SUPERFAMILY SSF52540 2 240 9.18E-77 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_16560 cb98a00d95a1d45a55d68374686a5755 312 SUPERFAMILY SSF54631 266 308 1.22E-6 T 11-10-2018 AMK58_16560 cb98a00d95a1d45a55d68374686a5755 312 Gene3D G3DSA:3.40.50.300 1 274 2.4E-76 T 11-10-2018 AMK58_16560 cb98a00d95a1d45a55d68374686a5755 312 Pfam PF00005 ABC transporter 18 163 2.5E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_16560 cb98a00d95a1d45a55d68374686a5755 312 SMART SM00382 26 213 1.1E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_17275 50704efcbdadb5754b1e653d073d02f1 157 Pfam PF08281 Sigma-70, region 4 100 151 2.0E-16 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMK58_17275 50704efcbdadb5754b1e653d073d02f1 157 Gene3D G3DSA:1.10.10.10 93 157 5.1E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_17275 50704efcbdadb5754b1e653d073d02f1 157 Pfam PF04542 Sigma-70 region 2 12 74 1.8E-10 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMK58_17275 50704efcbdadb5754b1e653d073d02f1 157 Gene3D G3DSA:1.10.1740.10 2 76 1.1E-16 T 11-10-2018 AMK58_17275 50704efcbdadb5754b1e653d073d02f1 157 SUPERFAMILY SSF88659 94 155 5.23E-14 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMK58_17275 50704efcbdadb5754b1e653d073d02f1 157 SUPERFAMILY SSF88946 5 83 1.84E-15 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMK58_17275 50704efcbdadb5754b1e653d073d02f1 157 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 11 153 1.6E-21 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMK58_26525 7abd6ccc364c0451086a5c8ca19a7984 276 Gene3D G3DSA:2.60.120.10 10 262 9.8E-116 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_26525 7abd6ccc364c0451086a5c8ca19a7984 276 Gene3D G3DSA:2.60.120.520 30 142 9.8E-116 T 11-10-2018 IPR027449 5-keto-4-deoxyuronate isomerase, N-terminal KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 AMK58_26525 7abd6ccc364c0451086a5c8ca19a7984 276 Hamap MF_00687 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [kduI]. 1 276 54.778 T 11-10-2018 IPR007045 5-keto 4-deoxyuronate isomerase GO:0008697|GO:0045490 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 AMK58_26525 7abd6ccc364c0451086a5c8ca19a7984 276 Pfam PF04962 KduI/IolB family 37 268 4.9E-35 T 11-10-2018 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 AMK58_26525 7abd6ccc364c0451086a5c8ca19a7984 276 PIRSF PIRSF006625 1 276 9.1E-134 T 11-10-2018 IPR007045 5-keto 4-deoxyuronate isomerase GO:0008697|GO:0045490 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 AMK58_26525 7abd6ccc364c0451086a5c8ca19a7984 276 SUPERFAMILY SSF51182 2 260 3.94E-106 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily AMK58_05625 056ba6a5df8f63ba111f17c49ec09d35 384 Gene3D G3DSA:3.40.50.2300 143 272 1.9E-63 T 11-10-2018 AMK58_05625 056ba6a5df8f63ba111f17c49ec09d35 384 Gene3D G3DSA:3.40.50.2300 35 343 1.9E-63 T 11-10-2018 AMK58_05625 056ba6a5df8f63ba111f17c49ec09d35 384 Pfam PF13458 Periplasmic binding protein 32 356 2.5E-52 T 11-10-2018 IPR028081 Leucine-binding protein domain AMK58_05625 056ba6a5df8f63ba111f17c49ec09d35 384 SUPERFAMILY SSF53822 35 360 1.02E-64 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMK58_04555 355375ab9ef17db74779d8ae3bf544cc 359 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 229 311 4.7E-34 T 11-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 AMK58_04555 355375ab9ef17db74779d8ae3bf544cc 359 PIRSF PIRSF000089 20 353 7.7E-107 T 11-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 AMK58_04555 355375ab9ef17db74779d8ae3bf544cc 359 SUPERFAMILY SSF52402 22 220 6.91E-53 T 11-10-2018 AMK58_04555 355375ab9ef17db74779d8ae3bf544cc 359 Gene3D G3DSA:3.40.50.620 15 218 4.4E-66 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_04555 355375ab9ef17db74779d8ae3bf544cc 359 SUPERFAMILY SSF52467 229 347 6.07E-45 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AMK58_04555 355375ab9ef17db74779d8ae3bf544cc 359 Pfam PF01012 Electron transfer flavoprotein domain 24 203 7.9E-43 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AMK58_04555 355375ab9ef17db74779d8ae3bf544cc 359 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 292 318 - T 11-10-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 AMK58_04555 355375ab9ef17db74779d8ae3bf544cc 359 Gene3D G3DSA:3.40.50.1220 223 356 3.7E-50 T 11-10-2018 AMK58_04555 355375ab9ef17db74779d8ae3bf544cc 359 SMART SM00893 24 216 5.9E-45 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AMK58_00165 27700de6d7ab43d35eaee128fcfed584 143 Pfam PF02675 S-adenosylmethionine decarboxylase 35 139 2.2E-35 T 11-10-2018 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 AMK58_00165 27700de6d7ab43d35eaee128fcfed584 143 Gene3D G3DSA:3.60.90.10 18 143 1.6E-39 T 11-10-2018 AMK58_00165 27700de6d7ab43d35eaee128fcfed584 143 Hamap MF_00464 S-adenosylmethionine decarboxylase proenzyme [speH]. 29 143 25.595 T 11-10-2018 IPR017716 S-adenosylmethionine decarboxylase proenzyme GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 AMK58_00165 27700de6d7ab43d35eaee128fcfed584 143 SUPERFAMILY SSF56276 32 140 5.49E-34 T 11-10-2018 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|Reactome: R-HSA-351202 AMK58_00165 27700de6d7ab43d35eaee128fcfed584 143 TIGRFAM TIGR03330 SAM_DCase_Bsu: S-adenosylmethionine decarboxylase proenzyme 32 139 3.6E-40 T 11-10-2018 IPR017716 S-adenosylmethionine decarboxylase proenzyme GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 AMK58_25795 63354ed431f0075255f3a492930632d3 255 Gene3D G3DSA:3.40.50.300 1 250 2.2E-64 T 11-10-2018 AMK58_25795 63354ed431f0075255f3a492930632d3 255 SUPERFAMILY SSF52540 4 249 2.56E-66 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_25795 63354ed431f0075255f3a492930632d3 255 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 227 249 1.2E-11 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AMK58_25795 63354ed431f0075255f3a492930632d3 255 Pfam PF00005 ABC transporter 22 178 9.2E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_25795 63354ed431f0075255f3a492930632d3 255 SMART SM00382 30 226 8.4E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_29290 5666d3665b919813e0e60757d90382a6 583 SUPERFAMILY SSF53448 84 295 1.37E-50 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_29290 5666d3665b919813e0e60757d90382a6 583 Gene3D G3DSA:3.90.550.10 68 309 1.0E-50 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_29290 5666d3665b919813e0e60757d90382a6 583 Gene3D G3DSA:3.40.50.20 456 525 2.4E-5 T 11-10-2018 AMK58_29290 5666d3665b919813e0e60757d90382a6 583 Pfam PF00535 Glycosyl transferase family 2 87 211 2.6E-19 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMK58_17305 b5a427b5704394788c8420746987b70d 535 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 14 146 5.0E-21 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMK58_17305 b5a427b5704394788c8420746987b70d 535 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 2 525 51.318 T 11-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 AMK58_17305 b5a427b5704394788c8420746987b70d 535 SUPERFAMILY SSF54980 391 462 5.04E-13 T 11-10-2018 IPR035647 EF-G domain III/V-like AMK58_17305 b5a427b5704394788c8420746987b70d 535 PRINTS PR00315 GTP-binding elongation factor signature 135 144 2.4E-12 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_17305 b5a427b5704394788c8420746987b70d 535 PRINTS PR00315 GTP-binding elongation factor signature 83 93 2.4E-12 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_17305 b5a427b5704394788c8420746987b70d 535 PRINTS PR00315 GTP-binding elongation factor signature 99 110 2.4E-12 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_17305 b5a427b5704394788c8420746987b70d 535 PRINTS PR00315 GTP-binding elongation factor signature 13 26 2.4E-12 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_17305 b5a427b5704394788c8420746987b70d 535 PRINTS PR00315 GTP-binding elongation factor signature 63 71 2.4E-12 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_17305 b5a427b5704394788c8420746987b70d 535 Pfam PF16658 Class II release factor RF3, C-terminal domain 385 512 1.1E-42 T 11-10-2018 IPR032090 Peptide chain release factor 3, C-terminal AMK58_17305 b5a427b5704394788c8420746987b70d 535 SUPERFAMILY SSF50447 259 391 3.53E-28 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMK58_17305 b5a427b5704394788c8420746987b70d 535 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 1 526 1.1E-213 T 11-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 AMK58_17305 b5a427b5704394788c8420746987b70d 535 Gene3D G3DSA:3.40.50.300 71 377 6.3E-106 T 11-10-2018 AMK58_17305 b5a427b5704394788c8420746987b70d 535 SUPERFAMILY SSF52540 9 275 3.2E-83 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_17305 b5a427b5704394788c8420746987b70d 535 Gene3D G3DSA:3.40.50.300 108 273 6.3E-106 T 11-10-2018 AMK58_17305 b5a427b5704394788c8420746987b70d 535 Pfam PF00009 Elongation factor Tu GTP binding domain 11 275 3.5E-49 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_17305 b5a427b5704394788c8420746987b70d 535 Gene3D G3DSA:3.30.70.3280 388 528 5.9E-45 T 11-10-2018 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily AMK58_17305 b5a427b5704394788c8420746987b70d 535 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 56 71 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site AMK58_11305 a1c1c63e9ebb885ef36b43efd0c5f9d1 428 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 333 424 7.7E-28 T 11-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMK58_11305 a1c1c63e9ebb885ef36b43efd0c5f9d1 428 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 292 299 - T 11-10-2018 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMK58_11305 a1c1c63e9ebb885ef36b43efd0c5f9d1 428 SUPERFAMILY SSF52440 1 101 8.2E-35 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMK58_11305 a1c1c63e9ebb885ef36b43efd0c5f9d1 428 SMART SM01210 332 426 2.0E-53 T 11-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMK58_11305 a1c1c63e9ebb885ef36b43efd0c5f9d1 428 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 100 4.3E-34 T 11-10-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMK58_11305 a1c1c63e9ebb885ef36b43efd0c5f9d1 428 Gene3D G3DSA:3.40.50.20 2 93 3.1E-35 T 11-10-2018 AMK58_11305 a1c1c63e9ebb885ef36b43efd0c5f9d1 428 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 426 42.116 T 11-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMK58_11305 a1c1c63e9ebb885ef36b43efd0c5f9d1 428 SMART SM01209 101 298 1.2E-130 T 11-10-2018 AMK58_11305 a1c1c63e9ebb885ef36b43efd0c5f9d1 428 Gene3D G3DSA:3.30.470.20 189 331 1.5E-55 T 11-10-2018 AMK58_11305 a1c1c63e9ebb885ef36b43efd0c5f9d1 428 SUPERFAMILY SSF51246 331 426 1.1E-30 T 11-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AMK58_11305 a1c1c63e9ebb885ef36b43efd0c5f9d1 428 SUPERFAMILY SSF56059 102 325 3.54E-63 T 11-10-2018 AMK58_11305 a1c1c63e9ebb885ef36b43efd0c5f9d1 428 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 426 7.8E-166 T 11-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMK58_11305 a1c1c63e9ebb885ef36b43efd0c5f9d1 428 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 101 298 2.4E-79 T 11-10-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMK58_11305 a1c1c63e9ebb885ef36b43efd0c5f9d1 428 Gene3D G3DSA:3.30.1490.20 119 188 1.1E-25 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMK58_11305 a1c1c63e9ebb885ef36b43efd0c5f9d1 428 Gene3D G3DSA:3.90.600.10 332 428 1.6E-32 T 11-10-2018 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMK58_05540 44da000023f8c0a2a2b3fe11d09288f4 289 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 19 275 6.5E-40 T 11-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 AMK58_05540 44da000023f8c0a2a2b3fe11d09288f4 289 Pfam PF04085 rod shape-determining protein MreC 134 273 6.6E-34 T 11-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 AMK58_05540 44da000023f8c0a2a2b3fe11d09288f4 289 Gene3D G3DSA:2.40.10.350 191 261 9.2E-32 T 11-10-2018 AMK58_05540 44da000023f8c0a2a2b3fe11d09288f4 289 Gene3D G3DSA:2.40.10.340 132 270 9.2E-32 T 11-10-2018 AMK58_05540 44da000023f8c0a2a2b3fe11d09288f4 289 PIRSF PIRSF038471 14 288 1.6E-63 T 11-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 AMK58_09395 a3936e745b2c19bae0b962b6ffa001f2 521 Gene3D G3DSA:3.90.1150.10 369 496 7.7E-40 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_09395 a3936e745b2c19bae0b962b6ffa001f2 521 Gene3D G3DSA:3.40.640.10 108 368 3.2E-56 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_09395 a3936e745b2c19bae0b962b6ffa001f2 521 SUPERFAMILY SSF53383 66 510 8.01E-102 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_09395 a3936e745b2c19bae0b962b6ffa001f2 521 Pfam PF02347 Glycine cleavage system P-protein 73 409 1.4E-10 T 11-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 AMK58_10080 bb043c5719110f52db77a77cac84040d 251 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 198 219 1.6E-66 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AMK58_10080 bb043c5719110f52db77a77cac84040d 251 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 222 247 1.6E-66 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AMK58_10080 bb043c5719110f52db77a77cac84040d 251 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 69 89 1.6E-66 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AMK58_10080 bb043c5719110f52db77a77cac84040d 251 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 50 69 1.6E-66 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AMK58_10080 bb043c5719110f52db77a77cac84040d 251 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 89 108 1.6E-66 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AMK58_10080 bb043c5719110f52db77a77cac84040d 251 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 177 197 1.6E-66 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AMK58_10080 bb043c5719110f52db77a77cac84040d 251 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 148 160 5.9E-26 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AMK58_10080 bb043c5719110f52db77a77cac84040d 251 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 238 248 5.9E-26 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AMK58_10080 bb043c5719110f52db77a77cac84040d 251 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 48 57 5.9E-26 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AMK58_10080 bb043c5719110f52db77a77cac84040d 251 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 108 120 5.9E-26 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AMK58_10080 bb043c5719110f52db77a77cac84040d 251 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 120 134 5.9E-26 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AMK58_10080 bb043c5719110f52db77a77cac84040d 251 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 170 182 5.9E-26 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AMK58_10080 bb043c5719110f52db77a77cac84040d 251 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 52 248 1.2E-91 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AMK58_10080 bb043c5719110f52db77a77cac84040d 251 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 177 192 - T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AMK58_10080 bb043c5719110f52db77a77cac84040d 251 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 225 237 - T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AMK58_10080 bb043c5719110f52db77a77cac84040d 251 Pfam PF00813 FliP family 52 244 4.4E-82 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AMK58_00780 1701da170c8fa60358d44775d4aa1b8d 706 Pfam PF00575 S1 RNA binding domain 617 688 7.6E-16 T 11-10-2018 IPR003029 S1 domain GO:0003676 AMK58_00780 1701da170c8fa60358d44775d4aa1b8d 706 SMART SM00316 618 688 5.7E-19 T 11-10-2018 IPR022967 RNA-binding domain, S1 AMK58_00780 1701da170c8fa60358d44775d4aa1b8d 706 Pfam PF03725 3' exoribonuclease family, domain 2 458 527 2.0E-5 T 11-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMK58_00780 1701da170c8fa60358d44775d4aa1b8d 706 Pfam PF03725 3' exoribonuclease family, domain 2 147 211 3.8E-12 T 11-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMK58_00780 1701da170c8fa60358d44775d4aa1b8d 706 Pfam PF00013 KH domain 554 611 1.1E-10 T 11-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 AMK58_00780 1701da170c8fa60358d44775d4aa1b8d 706 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 10 690 0.0 T 11-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AMK58_00780 1701da170c8fa60358d44775d4aa1b8d 706 SUPERFAMILY SSF54211 2 144 1.11E-53 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMK58_00780 1701da170c8fa60358d44775d4aa1b8d 706 Gene3D G3DSA:3.30.1370.10 548 619 1.2E-18 T 11-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 AMK58_00780 1701da170c8fa60358d44775d4aa1b8d 706 Pfam PF01138 3' exoribonuclease family, domain 1 14 144 5.2E-25 T 11-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMK58_00780 1701da170c8fa60358d44775d4aa1b8d 706 Pfam PF01138 3' exoribonuclease family, domain 1 322 454 1.1E-20 T 11-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMK58_00780 1701da170c8fa60358d44775d4aa1b8d 706 Gene3D G3DSA:3.30.230.70 1 230 1.1E-86 T 11-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMK58_00780 1701da170c8fa60358d44775d4aa1b8d 706 SUPERFAMILY SSF54791 552 638 5.31E-22 T 11-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 AMK58_00780 1701da170c8fa60358d44775d4aa1b8d 706 PIRSF PIRSF005499 1 705 1.0E-291 T 11-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AMK58_00780 1701da170c8fa60358d44775d4aa1b8d 706 SUPERFAMILY SSF54211 291 486 6.58E-47 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMK58_00780 1701da170c8fa60358d44775d4aa1b8d 706 SMART SM00322 550 615 7.8E-12 T 11-10-2018 IPR004087 K Homology domain GO:0003676 AMK58_00780 1701da170c8fa60358d44775d4aa1b8d 706 Gene3D G3DSA:2.40.50.140 620 692 2.4E-28 T 11-10-2018 AMK58_00780 1701da170c8fa60358d44775d4aa1b8d 706 SUPERFAMILY SSF50249 618 701 6.71E-20 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_00780 1701da170c8fa60358d44775d4aa1b8d 706 SUPERFAMILY SSF55666 145 234 1.12E-28 T 11-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMK58_00780 1701da170c8fa60358d44775d4aa1b8d 706 SUPERFAMILY SSF55666 448 544 3.75E-26 T 11-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMK58_00780 1701da170c8fa60358d44775d4aa1b8d 706 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 242 318 1.7E-12 T 11-10-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AMK58_00780 1701da170c8fa60358d44775d4aa1b8d 706 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 3 691 30.636 T 11-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AMK58_00780 1701da170c8fa60358d44775d4aa1b8d 706 Gene3D G3DSA:3.30.230.70 237 547 2.1E-113 T 11-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMK58_10975 b449b8a602b5f09f0c2298a31b01e93f 446 Pfam PF05193 Peptidase M16 inactive domain 190 365 7.1E-28 T 11-10-2018 IPR007863 Peptidase M16, C-terminal AMK58_10975 b449b8a602b5f09f0c2298a31b01e93f 446 Gene3D G3DSA:3.30.830.10 248 434 1.1E-50 T 11-10-2018 AMK58_10975 b449b8a602b5f09f0c2298a31b01e93f 446 SUPERFAMILY SSF63411 17 246 2.33E-44 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMK58_10975 b449b8a602b5f09f0c2298a31b01e93f 446 SUPERFAMILY SSF63411 252 437 3.0E-46 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMK58_10975 b449b8a602b5f09f0c2298a31b01e93f 446 Gene3D G3DSA:3.30.830.10 31 236 1.1E-38 T 11-10-2018 AMK58_15545 88f2918b66489736ccfa8d5bcf60fef5 250 SUPERFAMILY SSF55174 4 69 4.27E-9 T 11-10-2018 AMK58_15545 88f2918b66489736ccfa8d5bcf60fef5 250 Gene3D G3DSA:3.10.290.10 1 62 2.2E-21 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AMK58_15545 88f2918b66489736ccfa8d5bcf60fef5 250 SUPERFAMILY SSF53335 59 241 3.65E-27 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_15545 88f2918b66489736ccfa8d5bcf60fef5 250 PIRSF PIRSF005578 1 248 2.2E-98 T 11-10-2018 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 AMK58_15545 88f2918b66489736ccfa8d5bcf60fef5 250 Pfam PF01728 FtsJ-like methyltransferase 60 241 6.7E-23 T 11-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 AMK58_15545 88f2918b66489736ccfa8d5bcf60fef5 250 TIGRFAM TIGR00478 tly: TlyA family rRNA methyltransferase/putative hemolysin 5 237 5.2E-67 T 11-10-2018 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 AMK58_15545 88f2918b66489736ccfa8d5bcf60fef5 250 Pfam PF01479 S4 domain 5 43 5.2E-7 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_15545 88f2918b66489736ccfa8d5bcf60fef5 250 SMART SM00363 4 66 1.1E-4 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_15545 88f2918b66489736ccfa8d5bcf60fef5 250 Gene3D G3DSA:3.40.50.150 63 247 5.0E-74 T 11-10-2018 AMK58_01510 aff3f252996d3d065c1b00ea007b842b 229 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 222 6.6E-21 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_01510 aff3f252996d3d065c1b00ea007b842b 229 SUPERFAMILY SSF161098 11 207 2.62E-39 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_01510 aff3f252996d3d065c1b00ea007b842b 229 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 10 116 8.1E-23 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMK58_01510 aff3f252996d3d065c1b00ea007b842b 229 Gene3D G3DSA:1.10.3720.10 1 222 5.3E-50 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_27025 2b70a0019e9d3d3981609d1831d35009 754 SUPERFAMILY SSF55785 2 124 1.35E-23 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_27025 2b70a0019e9d3d3981609d1831d35009 754 SMART SM00388 522 590 6.4E-10 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_27025 2b70a0019e9d3d3981609d1831d35009 754 Gene3D G3DSA:3.30.450.20 15 253 3.1E-164 T 11-10-2018 AMK58_27025 2b70a0019e9d3d3981609d1831d35009 754 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 631 741 5.4E-15 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_27025 2b70a0019e9d3d3981609d1831d35009 754 Pfam PF01590 GAF domain 155 313 5.9E-15 T 11-10-2018 IPR003018 GAF domain GO:0005515 AMK58_27025 2b70a0019e9d3d3981609d1831d35009 754 Gene3D G3DSA:3.30.450.40 11 478 3.1E-164 T 11-10-2018 IPR029016 GAF-like domain superfamily AMK58_27025 2b70a0019e9d3d3981609d1831d35009 754 SUPERFAMILY SSF55874 589 742 1.44E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_27025 2b70a0019e9d3d3981609d1831d35009 754 Pfam PF00512 His Kinase A (phospho-acceptor) domain 524 588 1.7E-10 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_27025 2b70a0019e9d3d3981609d1831d35009 754 Gene3D G3DSA:1.10.287.130 497 588 4.6E-16 T 11-10-2018 AMK58_27025 2b70a0019e9d3d3981609d1831d35009 754 SUPERFAMILY SSF47384 507 589 1.12E-15 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_27025 2b70a0019e9d3d3981609d1831d35009 754 SUPERFAMILY SSF55781 324 508 6.38E-56 T 11-10-2018 AMK58_27025 2b70a0019e9d3d3981609d1831d35009 754 Pfam PF00360 Phytochrome region 328 506 9.9E-60 T 11-10-2018 IPR013515 Phytochrome, central region GO:0006355|GO:0009584|GO:0018298 AMK58_27025 2b70a0019e9d3d3981609d1831d35009 754 PRINTS PR01033 Phytochrome signature 433 452 4.8E-19 T 11-10-2018 IPR001294 Phytochrome GO:0006355|GO:0009584 AMK58_27025 2b70a0019e9d3d3981609d1831d35009 754 PRINTS PR01033 Phytochrome signature 465 483 4.8E-19 T 11-10-2018 IPR001294 Phytochrome GO:0006355|GO:0009584 AMK58_27025 2b70a0019e9d3d3981609d1831d35009 754 PRINTS PR01033 Phytochrome signature 167 186 4.8E-19 T 11-10-2018 IPR001294 Phytochrome GO:0006355|GO:0009584 AMK58_27025 2b70a0019e9d3d3981609d1831d35009 754 PRINTS PR01033 Phytochrome signature 348 368 4.8E-19 T 11-10-2018 IPR001294 Phytochrome GO:0006355|GO:0009584 AMK58_27025 2b70a0019e9d3d3981609d1831d35009 754 PRINTS PR01033 Phytochrome signature 250 271 4.8E-19 T 11-10-2018 IPR001294 Phytochrome GO:0006355|GO:0009584 AMK58_27025 2b70a0019e9d3d3981609d1831d35009 754 Pfam PF08446 PAS fold 11 123 2.5E-12 T 11-10-2018 IPR013654 PAS fold-2 GO:0006355 AMK58_27025 2b70a0019e9d3d3981609d1831d35009 754 SMART SM00387 631 743 2.0E-25 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_27025 2b70a0019e9d3d3981609d1831d35009 754 Gene3D G3DSA:3.30.450.270 321 496 3.1E-164 T 11-10-2018 AMK58_27025 2b70a0019e9d3d3981609d1831d35009 754 SUPERFAMILY SSF55781 140 314 2.38E-55 T 11-10-2018 AMK58_27025 2b70a0019e9d3d3981609d1831d35009 754 Gene3D G3DSA:3.30.565.10 593 742 9.4E-32 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_27025 2b70a0019e9d3d3981609d1831d35009 754 SMART SM00065 152 326 9.7E-6 T 11-10-2018 IPR003018 GAF domain GO:0005515 AMK58_23090 9b96deb9f3f3dcc68ff77c42a8799c6b 379 Gene3D G3DSA:1.20.140.10 233 378 1.1E-57 T 11-10-2018 AMK58_23090 9b96deb9f3f3dcc68ff77c42a8799c6b 379 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 227 376 6.7E-51 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMK58_23090 9b96deb9f3f3dcc68ff77c42a8799c6b 379 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 123 135 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMK58_23090 9b96deb9f3f3dcc68ff77c42a8799c6b 379 Gene3D G3DSA:2.40.110.10 120 232 2.3E-45 T 11-10-2018 AMK58_23090 9b96deb9f3f3dcc68ff77c42a8799c6b 379 PIRSF PIRSF016578 3 190 9.5E-10 T 11-10-2018 AMK58_23090 9b96deb9f3f3dcc68ff77c42a8799c6b 379 PIRSF PIRSF016578 221 378 5.5E-16 T 11-10-2018 AMK58_23090 9b96deb9f3f3dcc68ff77c42a8799c6b 379 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 335 354 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMK58_23090 9b96deb9f3f3dcc68ff77c42a8799c6b 379 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 117 3.8E-34 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMK58_23090 9b96deb9f3f3dcc68ff77c42a8799c6b 379 SUPERFAMILY SSF47203 225 378 8.05E-62 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMK58_23090 9b96deb9f3f3dcc68ff77c42a8799c6b 379 SUPERFAMILY SSF56645 1 240 6.28E-87 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMK58_23090 9b96deb9f3f3dcc68ff77c42a8799c6b 379 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 215 4.2E-27 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMK58_23090 9b96deb9f3f3dcc68ff77c42a8799c6b 379 Gene3D G3DSA:1.10.540.10 1 119 2.7E-42 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMK58_19845 189d5aa750895ad8d8292a7dd90c7b72 165 TIGRFAM TIGR01935 NOT-MenG: RraA family 7 155 1.5E-62 T 11-10-2018 IPR010203 Regulator of ribonuclease activity A GO:0008428|GO:0051252 AMK58_19845 189d5aa750895ad8d8292a7dd90c7b72 165 SUPERFAMILY SSF89562 6 159 4.97E-48 T 11-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily AMK58_19845 189d5aa750895ad8d8292a7dd90c7b72 165 Gene3D G3DSA:3.50.30.40 2 163 8.0E-61 T 11-10-2018 AMK58_19845 189d5aa750895ad8d8292a7dd90c7b72 165 Pfam PF03737 Aldolase/RraA 7 155 3.0E-43 T 11-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein AMK58_02265 16d25f05862028388d18719a54dc3aa0 276 Gene3D G3DSA:1.10.3720.10 1 269 3.7E-54 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_02265 16d25f05862028388d18719a54dc3aa0 276 SUPERFAMILY SSF161098 6 272 1.78E-59 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_02265 16d25f05862028388d18719a54dc3aa0 276 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 271 6.1E-17 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_05905 068610a98ad20701304c85bddbff3f8c 358 Pfam PF02608 ABC transporter substrate-binding protein PnrA-like 28 289 9.6E-49 T 11-10-2018 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 AMK58_05905 068610a98ad20701304c85bddbff3f8c 358 Gene3D G3DSA:3.40.50.2300 132 348 1.4E-137 T 11-10-2018 AMK58_05905 068610a98ad20701304c85bddbff3f8c 358 Gene3D G3DSA:3.40.50.2300 29 285 1.4E-137 T 11-10-2018 AMK58_05905 068610a98ad20701304c85bddbff3f8c 358 SUPERFAMILY SSF53822 167 237 4.62E-6 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMK58_25970 dfe4f27a1ddae792df6d26c66ed61a34 529 SUPERFAMILY SSF56235 5 529 9.45E-152 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMK58_25970 dfe4f27a1ddae792df6d26c66ed61a34 529 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 367 385 2.4E-22 T 11-10-2018 AMK58_25970 dfe4f27a1ddae792df6d26c66ed61a34 529 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 343 361 2.4E-22 T 11-10-2018 AMK58_25970 dfe4f27a1ddae792df6d26c66ed61a34 529 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 125 144 2.4E-22 T 11-10-2018 AMK58_25970 dfe4f27a1ddae792df6d26c66ed61a34 529 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 398 413 2.4E-22 T 11-10-2018 AMK58_25970 dfe4f27a1ddae792df6d26c66ed61a34 529 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 252 271 2.4E-22 T 11-10-2018 AMK58_25970 dfe4f27a1ddae792df6d26c66ed61a34 529 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 32 57 2.4E-22 T 11-10-2018 AMK58_25970 dfe4f27a1ddae792df6d26c66ed61a34 529 Pfam PF01019 Gamma-glutamyltranspeptidase 25 524 1.7E-126 T 11-10-2018 AMK58_25970 dfe4f27a1ddae792df6d26c66ed61a34 529 Gene3D G3DSA:1.10.246.130 240 343 4.1E-11 T 11-10-2018 AMK58_25970 dfe4f27a1ddae792df6d26c66ed61a34 529 Gene3D G3DSA:3.60.20.40 344 529 6.8E-68 T 11-10-2018 AMK58_02225 b2538ae3aafb154e54a3165c4cfbee28 378 SUPERFAMILY SSF51419 15 261 2.13E-65 T 11-10-2018 IPR029066 PLP-binding barrel AMK58_02225 b2538ae3aafb154e54a3165c4cfbee28 378 SUPERFAMILY SSF50621 240 378 7.74E-30 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AMK58_02225 b2538ae3aafb154e54a3165c4cfbee28 378 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 259 356 6.8E-13 T 11-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 AMK58_02225 b2538ae3aafb154e54a3165c4cfbee28 378 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 204 217 - T 11-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site AMK58_02225 b2538ae3aafb154e54a3165c4cfbee28 378 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 44 62 2.2E-17 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AMK58_02225 b2538ae3aafb154e54a3165c4cfbee28 378 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 249 268 2.2E-17 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AMK58_02225 b2538ae3aafb154e54a3165c4cfbee28 378 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 64 76 2.2E-17 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AMK58_02225 b2538ae3aafb154e54a3165c4cfbee28 378 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 166 179 2.2E-17 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AMK58_02225 b2538ae3aafb154e54a3165c4cfbee28 378 Gene3D G3DSA:2.40.37.10 13 370 2.8E-95 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AMK58_02225 b2538ae3aafb154e54a3165c4cfbee28 378 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 25 258 1.5E-57 T 11-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 AMK58_02225 b2538ae3aafb154e54a3165c4cfbee28 378 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 44 62 - T 11-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site AMK58_02225 b2538ae3aafb154e54a3165c4cfbee28 378 Gene3D G3DSA:3.20.20.10 24 259 2.8E-95 T 11-10-2018 IPR029066 PLP-binding barrel AMK58_02225 b2538ae3aafb154e54a3165c4cfbee28 378 PRINTS PR01182 Ornithine decarboxylase signature 86 110 4.6E-21 T 11-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 AMK58_02225 b2538ae3aafb154e54a3165c4cfbee28 378 PRINTS PR01182 Ornithine decarboxylase signature 42 69 4.6E-21 T 11-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 AMK58_02225 b2538ae3aafb154e54a3165c4cfbee28 378 PRINTS PR01182 Ornithine decarboxylase signature 116 138 4.6E-21 T 11-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 AMK58_02225 b2538ae3aafb154e54a3165c4cfbee28 378 PRINTS PR01182 Ornithine decarboxylase signature 16 40 4.6E-21 T 11-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 AMK58_02225 b2538ae3aafb154e54a3165c4cfbee28 378 PRINTS PR01182 Ornithine decarboxylase signature 320 330 4.6E-21 T 11-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 AMK58_15870 e10ff59f4a00f99462a5d9916de3156b 479 SUPERFAMILY SSF54534 317 412 4.58E-12 T 11-10-2018 AMK58_15870 e10ff59f4a00f99462a5d9916de3156b 479 Gene3D G3DSA:1.10.4030.30 47 189 1.2E-66 T 11-10-2018 AMK58_15870 e10ff59f4a00f99462a5d9916de3156b 479 SUPERFAMILY SSF54534 189 290 8.5E-23 T 11-10-2018 AMK58_15870 e10ff59f4a00f99462a5d9916de3156b 479 Pfam PF00639 PPIC-type PPIASE domain 201 286 5.5E-19 T 11-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 AMK58_15870 e10ff59f4a00f99462a5d9916de3156b 479 Pfam PF09312 SurA N-terminal domain 46 159 2.0E-19 T 11-10-2018 IPR015391 SurA N-terminal AMK58_15870 e10ff59f4a00f99462a5d9916de3156b 479 Gene3D G3DSA:3.10.50.40 190 289 1.2E-66 T 11-10-2018 AMK58_15870 e10ff59f4a00f99462a5d9916de3156b 479 SUPERFAMILY SSF109998 47 213 1.73E-34 T 11-10-2018 IPR027304 Trigger factor/SurA domain superfamily AMK58_15870 e10ff59f4a00f99462a5d9916de3156b 479 Gene3D G3DSA:3.10.50.40 314 414 6.7E-9 T 11-10-2018 AMK58_27420 077c09374a38f8bf06881ff55b554411 608 SUPERFAMILY SSF52016 392 593 1.8E-46 T 11-10-2018 AMK58_27420 077c09374a38f8bf06881ff55b554411 608 SUPERFAMILY SSF143975 16 389 2.62E-116 T 11-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMK58_27420 077c09374a38f8bf06881ff55b554411 608 Pfam PF00920 Dehydratase family 56 585 6.4E-153 T 11-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMK58_27420 077c09374a38f8bf06881ff55b554411 608 Gene3D G3DSA:3.50.30.80 392 556 1.3E-34 T 11-10-2018 AMK58_27420 077c09374a38f8bf06881ff55b554411 608 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 138 148 - T 11-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMK58_20410 db599ba97add67a0b1b70cb9652ca8c6 72 SMART SM00316 4 72 9.1E-5 T 11-10-2018 IPR022967 RNA-binding domain, S1 AMK58_20410 db599ba97add67a0b1b70cb9652ca8c6 72 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 4.3E-28 T 11-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 AMK58_20410 db599ba97add67a0b1b70cb9652ca8c6 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 26.898 T 11-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 AMK58_20410 db599ba97add67a0b1b70cb9652ca8c6 72 SUPERFAMILY SSF50249 1 71 4.86E-28 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_20410 db599ba97add67a0b1b70cb9652ca8c6 72 Gene3D G3DSA:2.40.50.140 1 72 3.1E-37 T 11-10-2018 AMK58_20410 db599ba97add67a0b1b70cb9652ca8c6 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 70 1.9E-35 T 11-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 AMK58_04975 3ba4a855a1d0ffc8f6e304a9d18af2c2 248 Gene3D G3DSA:3.40.50.150 1 248 7.5E-98 T 11-10-2018 AMK58_04975 3ba4a855a1d0ffc8f6e304a9d18af2c2 248 PIRSF PIRSF034653 1 248 4.0E-116 T 11-10-2018 IPR017031 Predicted S-adenosyl-L-methionine dependent methyltransferase, YjhP-type AMK58_04975 3ba4a855a1d0ffc8f6e304a9d18af2c2 248 Pfam PF13847 Methyltransferase domain 35 158 1.0E-10 T 11-10-2018 IPR025714 Methyltransferase domain AMK58_04975 3ba4a855a1d0ffc8f6e304a9d18af2c2 248 SUPERFAMILY SSF53335 6 243 2.13E-43 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_05465 866e27c25a03db3ccdfe66604bb6d572 391 SUPERFAMILY SSF52540 132 376 5.27E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_05465 866e27c25a03db3ccdfe66604bb6d572 391 SUPERFAMILY SSF117916 2 93 2.22E-19 T 11-10-2018 IPR034904 Fe-S cluster assembly domain superfamily AMK58_05465 866e27c25a03db3ccdfe66604bb6d572 391 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 129 371 9.8E-106 T 11-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 AMK58_05465 866e27c25a03db3ccdfe66604bb6d572 391 ProSitePatterns PS01215 Mrp family signature. 235 251 - T 11-10-2018 IPR000808 Mrp, conserved site GO:0005524 AMK58_05465 866e27c25a03db3ccdfe66604bb6d572 391 Gene3D G3DSA:3.40.50.300 116 370 1.4E-88 T 11-10-2018 AMK58_05465 866e27c25a03db3ccdfe66604bb6d572 391 Gene3D G3DSA:3.30.300.130 1 95 1.3E-10 T 11-10-2018 IPR034904 Fe-S cluster assembly domain superfamily AMK58_05465 866e27c25a03db3ccdfe66604bb6d572 391 Pfam PF01883 Iron-sulfur cluster assembly protein 6 76 1.2E-20 T 11-10-2018 IPR002744 MIP18 family-like AMK58_05465 866e27c25a03db3ccdfe66604bb6d572 391 Hamap MF_02040 Iron-sulfur cluster carrier protein. 123 372 38.769 T 11-10-2018 IPR019591 Mrp/NBP35 ATP-binding protein AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 SMART SM00387 671 795 2.1E-26 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 Gene3D G3DSA:3.30.450.20 139 263 1.3E-24 T 11-10-2018 AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 Gene3D G3DSA:3.30.450.20 423 556 1.6E-15 T 11-10-2018 AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 Gene3D G3DSA:3.30.565.10 636 798 1.5E-39 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 672 792 6.8E-18 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 SUPERFAMILY SSF55785 418 538 1.12E-15 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 PRINTS PR00344 Bacterial sensor protein C-terminal signature 779 792 9.4E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 PRINTS PR00344 Bacterial sensor protein C-terminal signature 742 752 9.4E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 PRINTS PR00344 Bacterial sensor protein C-terminal signature 724 738 9.4E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 PRINTS PR00344 Bacterial sensor protein C-terminal signature 755 773 9.4E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 Gene3D G3DSA:3.30.450.20 264 376 9.3E-32 T 11-10-2018 AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 Pfam PF08448 PAS fold 149 256 7.8E-13 T 11-10-2018 IPR013656 PAS fold-4 AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 Pfam PF08447 PAS fold 290 373 1.7E-18 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 SUPERFAMILY SSF52172 6 140 5.69E-23 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 Pfam PF13426 PAS domain 441 538 1.7E-6 T 11-10-2018 IPR000014 PAS domain AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 262 385 6.5E-15 T 11-10-2018 IPR000014 PAS domain AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 135 258 1.5E-17 T 11-10-2018 IPR000014 PAS domain AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 424 546 2.1E-13 T 11-10-2018 IPR000014 PAS domain AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 SMART SM00388 562 630 4.6E-8 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 SUPERFAMILY SSF55874 621 793 9.95E-37 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 Gene3D G3DSA:1.10.287.130 557 628 3.3E-20 T 11-10-2018 AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 SUPERFAMILY SSF55785 251 377 2.79E-28 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 Pfam PF00072 Response regulator receiver domain 7 117 4.7E-12 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 Pfam PF00072 Response regulator receiver domain 823 933 1.1E-18 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 SUPERFAMILY SSF55785 151 262 1.8E-20 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 SUPERFAMILY SSF47384 553 627 1.18E-10 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 Gene3D G3DSA:3.40.50.2300 815 946 6.6E-26 T 11-10-2018 AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 SUPERFAMILY SSF52172 822 939 1.12E-28 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 Gene3D G3DSA:3.40.50.2300 2 138 2.2E-20 T 11-10-2018 AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 SMART SM00091 266 332 1.2E-4 T 11-10-2018 IPR000014 PAS domain AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 SMART SM00091 424 491 4.1E-5 T 11-10-2018 IPR000014 PAS domain AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 SMART SM00091 138 206 1.1E-7 T 11-10-2018 IPR000014 PAS domain AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 SMART SM00086 338 380 5.6E-9 T 11-10-2018 IPR001610 PAC motif AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 SMART SM00086 498 540 0.078 T 11-10-2018 IPR001610 PAC motif AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 SMART SM00086 212 254 0.96 T 11-10-2018 IPR001610 PAC motif AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 SMART SM00448 821 933 1.6E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 SMART SM00448 5 117 4.4E-13 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_27015 8e8d73d316dedd7cf16a3c2938386887 957 Pfam PF00512 His Kinase A (phospho-acceptor) domain 562 628 5.7E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_15640 5b3ea0919c44623659f5208235a21d44 196 ProSitePatterns PS00910 Uncharacterized protein family UPF0029 signature. 70 99 - T 11-10-2018 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site AMK58_15640 5b3ea0919c44623659f5208235a21d44 196 SUPERFAMILY SSF54980 129 192 1.87E-5 T 11-10-2018 IPR035647 EF-G domain III/V-like AMK58_15640 5b3ea0919c44623659f5208235a21d44 196 SUPERFAMILY SSF54211 2 120 4.93E-37 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMK58_15640 5b3ea0919c44623659f5208235a21d44 196 Gene3D G3DSA:3.30.230.30 1 124 1.5E-45 T 11-10-2018 IPR036956 Impact, N-terminal domain superfamily AMK58_15640 5b3ea0919c44623659f5208235a21d44 196 Pfam PF01205 Uncharacterized protein family UPF0029 15 115 1.3E-25 T 11-10-2018 IPR001498 Impact, N-terminal AMK58_03625 6005a5b2f0e4e713a9f927d65932b6e7 846 SUPERFAMILY SSF52540 181 439 6.41E-51 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_03625 6005a5b2f0e4e713a9f927d65932b6e7 846 Pfam PF04408 Helicase associated domain (HA2) 394 495 3.8E-14 T 11-10-2018 IPR007502 Helicase-associated domain GO:0004386 AMK58_03625 6005a5b2f0e4e713a9f927d65932b6e7 846 SMART SM00487 4 189 9.6E-19 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMK58_03625 6005a5b2f0e4e713a9f927d65932b6e7 846 TIGRFAM TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB 6 845 0.0 T 11-10-2018 IPR010225 ATP-dependent helicase HrpB GO:0008026 AMK58_03625 6005a5b2f0e4e713a9f927d65932b6e7 846 PIRSF PIRSF005496 1 846 0.0 T 11-10-2018 AMK58_03625 6005a5b2f0e4e713a9f927d65932b6e7 846 Gene3D G3DSA:3.40.50.300 183 350 8.7E-52 T 11-10-2018 AMK58_03625 6005a5b2f0e4e713a9f927d65932b6e7 846 SMART SM00490 230 333 7.9E-13 T 11-10-2018 IPR001650 Helicase, C-terminal AMK58_03625 6005a5b2f0e4e713a9f927d65932b6e7 846 Pfam PF00271 Helicase conserved C-terminal domain 212 332 6.9E-12 T 11-10-2018 IPR001650 Helicase, C-terminal AMK58_03625 6005a5b2f0e4e713a9f927d65932b6e7 846 Gene3D G3DSA:3.40.50.300 3 182 1.0E-53 T 11-10-2018 AMK58_03625 6005a5b2f0e4e713a9f927d65932b6e7 846 Pfam PF08482 ATP-dependent helicase C-terminal 701 832 2.3E-54 T 11-10-2018 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal AMK58_03625 6005a5b2f0e4e713a9f927d65932b6e7 846 Gene3D G3DSA:1.20.120.1080 378 472 5.5E-13 T 11-10-2018 AMK58_03625 6005a5b2f0e4e713a9f927d65932b6e7 846 SMART SM00847 393 484 2.3E-18 T 11-10-2018 IPR007502 Helicase-associated domain GO:0004386 AMK58_03625 6005a5b2f0e4e713a9f927d65932b6e7 846 SUPERFAMILY SSF52540 16 162 4.75E-26 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_15215 1cfc538b1f3fc05a9e129c8c2f58128f 268 Pfam PF09339 IclR helix-turn-helix domain 9 58 2.2E-16 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMK58_15215 1cfc538b1f3fc05a9e129c8c2f58128f 268 Gene3D G3DSA:1.10.10.10 2 74 4.0E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_15215 1cfc538b1f3fc05a9e129c8c2f58128f 268 SUPERFAMILY SSF55781 71 252 1.57E-48 T 11-10-2018 AMK58_15215 1cfc538b1f3fc05a9e129c8c2f58128f 268 Gene3D G3DSA:3.30.450.40 75 261 6.1E-58 T 11-10-2018 IPR029016 GAF-like domain superfamily AMK58_15215 1cfc538b1f3fc05a9e129c8c2f58128f 268 Pfam PF01614 Bacterial transcriptional regulator 134 248 1.3E-32 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal AMK58_15215 1cfc538b1f3fc05a9e129c8c2f58128f 268 SMART SM00346 6 96 9.5E-28 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMK58_15215 1cfc538b1f3fc05a9e129c8c2f58128f 268 SUPERFAMILY SSF46785 6 80 4.72E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_20355 65b5b35596369bb70328cd4e7adca257 321 Gene3D G3DSA:3.40.800.10 7 311 9.6E-89 T 11-10-2018 AMK58_20355 65b5b35596369bb70328cd4e7adca257 321 SUPERFAMILY SSF52768 13 305 4.5E-82 T 11-10-2018 IPR023696 Ureohydrolase domain superfamily AMK58_20355 65b5b35596369bb70328cd4e7adca257 321 ProSitePatterns PS01053 Arginase family signature. 232 253 - T 11-10-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 AMK58_20355 65b5b35596369bb70328cd4e7adca257 321 PRINTS PR00116 Arginase signature 99 114 3.3E-48 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 AMK58_20355 65b5b35596369bb70328cd4e7adca257 321 PRINTS PR00116 Arginase signature 264 278 3.3E-48 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 AMK58_20355 65b5b35596369bb70328cd4e7adca257 321 PRINTS PR00116 Arginase signature 126 153 3.3E-48 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 AMK58_20355 65b5b35596369bb70328cd4e7adca257 321 PRINTS PR00116 Arginase signature 229 258 3.3E-48 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 AMK58_20355 65b5b35596369bb70328cd4e7adca257 321 PRINTS PR00116 Arginase signature 180 198 3.3E-48 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 AMK58_20355 65b5b35596369bb70328cd4e7adca257 321 TIGRFAM TIGR01229 rocF_arginase: arginase 14 305 8.3E-85 T 11-10-2018 IPR014033 Arginase GO:0004053|GO:0006525|GO:0046872 KEGG: 00220+3.5.3.1|KEGG: 00330+3.5.3.1|MetaCyc: PWY-31|MetaCyc: PWY-4984|MetaCyc: PWY-6305|MetaCyc: PWY-6922|Reactome: R-HSA-70635 AMK58_20355 65b5b35596369bb70328cd4e7adca257 321 PIRSF PIRSF036979 2 303 4.0E-30 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 AMK58_20355 65b5b35596369bb70328cd4e7adca257 321 Pfam PF00491 Arginase family 13 302 4.9E-70 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 AMK58_22985 fcb9036e1402c6e719fe8495dc5bd445 324 Gene3D G3DSA:3.40.190.150 20 310 2.0E-66 T 11-10-2018 AMK58_22985 fcb9036e1402c6e719fe8495dc5bd445 324 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 40 320 2.4E-25 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 AMK58_22985 fcb9036e1402c6e719fe8495dc5bd445 324 PIRSF PIRSF017082 1 324 1.3E-99 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 AMK58_22985 fcb9036e1402c6e719fe8495dc5bd445 324 Gene3D G3DSA:3.40.190.10 117 249 2.0E-66 T 11-10-2018 AMK58_08880 5e60f597985ee11e99e7e6781c9d5bbe 1107 Gene3D G3DSA:3.90.400.10 114 184 7.6E-220 T 11-10-2018 AMK58_08880 5e60f597985ee11e99e7e6781c9d5bbe 1107 Pfam PF00128 Alpha amylase, catalytic domain 39 396 1.0E-74 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMK58_08880 5e60f597985ee11e99e7e6781c9d5bbe 1107 Gene3D G3DSA:3.90.1200.10 819 1107 9.7E-66 T 11-10-2018 AMK58_08880 5e60f597985ee11e99e7e6781c9d5bbe 1107 SMART SM00642 24 427 4.9E-104 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMK58_08880 5e60f597985ee11e99e7e6781c9d5bbe 1107 Pfam PF16657 Maltogenic Amylase, C-terminal domain 475 556 2.9E-27 T 11-10-2018 IPR032091 Maltogenic Amylase, C-terminal AMK58_08880 5e60f597985ee11e99e7e6781c9d5bbe 1107 SUPERFAMILY SSF51011 479 559 5.04E-16 T 11-10-2018 AMK58_08880 5e60f597985ee11e99e7e6781c9d5bbe 1107 Gene3D G3DSA:3.20.20.80 16 470 7.6E-220 T 11-10-2018 AMK58_08880 5e60f597985ee11e99e7e6781c9d5bbe 1107 Gene3D G3DSA:2.60.40.1180 475 569 1.9E-34 T 11-10-2018 IPR013780 Glycosyl hydrolase, all-beta AMK58_08880 5e60f597985ee11e99e7e6781c9d5bbe 1107 TIGRFAM TIGR02457 TreS_Cterm: putative maltokinase 576 1102 3.2E-158 T 11-10-2018 IPR012811 Trehalose synthase/probable maltokinase, C-terminal domain AMK58_08880 5e60f597985ee11e99e7e6781c9d5bbe 1107 TIGRFAM TIGR02456 treS_nterm: trehalose synthase 16 559 8.5E-282 T 11-10-2018 IPR012810 Trehalose synthase/alpha-amylase, N-terminal GO:0003824|GO:0005975 KEGG: 00500+5.4.99.16|MetaCyc: PWY-2622|MetaCyc: PWY-7900 AMK58_08880 5e60f597985ee11e99e7e6781c9d5bbe 1107 SUPERFAMILY SSF51445 15 472 3.82E-128 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily AMK58_08880 5e60f597985ee11e99e7e6781c9d5bbe 1107 SUPERFAMILY SSF56112 738 1079 9.39E-16 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily AMK58_20610 9b573a8c6c484e11f8f9b15cd08756e2 163 SMART SM00347 21 120 7.5E-7 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_20610 9b573a8c6c484e11f8f9b15cd08756e2 163 SUPERFAMILY SSF46785 22 135 2.4E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_20610 9b573a8c6c484e11f8f9b15cd08756e2 163 ProSitePatterns PS01117 MarR-type HTH domain signature. 62 96 - T 11-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site AMK58_20610 9b573a8c6c484e11f8f9b15cd08756e2 163 Pfam PF12802 MarR family 27 87 4.4E-8 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_20610 9b573a8c6c484e11f8f9b15cd08756e2 163 Gene3D G3DSA:1.10.10.10 3 134 4.9E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_29045 e4bbf049004b31a54ca17a32bfcdfd45 262 SUPERFAMILY SSF53448 2 179 2.06E-43 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_29045 e4bbf049004b31a54ca17a32bfcdfd45 262 Pfam PF00535 Glycosyl transferase family 2 6 86 2.3E-24 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMK58_29045 e4bbf049004b31a54ca17a32bfcdfd45 262 Gene3D G3DSA:3.90.550.10 1 185 1.6E-43 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_04605 ac932b5aeb5a3676535e2e68a0c12b6f 97 SUPERFAMILY SSF54862 13 94 7.53E-14 T 11-10-2018 AMK58_04605 ac932b5aeb5a3676535e2e68a0c12b6f 97 Pfam PF14697 4Fe-4S dicluster domain 22 91 3.5E-9 T 11-10-2018 AMK58_04605 ac932b5aeb5a3676535e2e68a0c12b6f 97 TIGRFAM TIGR02936 fdxN_nitrog: ferredoxin III, nif-specific 6 94 1.6E-40 T 11-10-2018 IPR014283 Ferredoxin III 4[4Fe-4S], nif-specific AMK58_04605 ac932b5aeb5a3676535e2e68a0c12b6f 97 Gene3D G3DSA:3.30.70.20 3 97 4.0E-12 T 11-10-2018 AMK58_04605 ac932b5aeb5a3676535e2e68a0c12b6f 97 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 28 39 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMK58_25945 5ad890c5e6a6d631649bcfd6bd7db38a 378 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 255 273 8.0E-13 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMK58_25945 5ad890c5e6a6d631649bcfd6bd7db38a 378 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 48 64 8.0E-13 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMK58_25945 5ad890c5e6a6d631649bcfd6bd7db38a 378 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 26 42 8.0E-13 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMK58_25945 5ad890c5e6a6d631649bcfd6bd7db38a 378 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 67 85 8.0E-13 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMK58_25945 5ad890c5e6a6d631649bcfd6bd7db38a 378 SUPERFAMILY SSF53822 24 369 2.59E-99 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMK58_25945 5ad890c5e6a6d631649bcfd6bd7db38a 378 Pfam PF13458 Periplasmic binding protein 25 364 6.7E-81 T 11-10-2018 IPR028081 Leucine-binding protein domain AMK58_25945 5ad890c5e6a6d631649bcfd6bd7db38a 378 Gene3D G3DSA:3.40.50.2300 27 341 9.1E-101 T 11-10-2018 AMK58_25945 5ad890c5e6a6d631649bcfd6bd7db38a 378 Gene3D G3DSA:3.40.50.2300 145 273 9.1E-101 T 11-10-2018 AMK58_21940 484a078305948c949d7734243b0fa1f1 290 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 15 61 7.9E-11 T 11-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AMK58_21940 484a078305948c949d7734243b0fa1f1 290 Gene3D G3DSA:1.10.3720.10 76 286 2.0E-23 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_21940 484a078305948c949d7734243b0fa1f1 290 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 103 285 1.6E-27 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_21940 484a078305948c949d7734243b0fa1f1 290 SUPERFAMILY SSF161098 80 266 6.41E-31 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_21475 7ffc4102f67952da3f3960c9eccccbd8 418 Pfam PF12320 Type 5 capsule protein repressor C-terminal domain 290 395 1.9E-11 T 11-10-2018 IPR026843 Nuclease SbcCD subunit D, C-terminal domain AMK58_21475 7ffc4102f67952da3f3960c9eccccbd8 418 TIGRFAM TIGR00619 sbcd: exonuclease SbcCD, D subunit 1 262 2.4E-53 T 11-10-2018 IPR004593 Nuclease SbcCD subunit D GO:0004519|GO:0006259|GO:0008408 AMK58_21475 7ffc4102f67952da3f3960c9eccccbd8 418 Pfam PF00149 Calcineurin-like phosphoesterase 1 97 3.5E-11 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AMK58_21475 7ffc4102f67952da3f3960c9eccccbd8 418 SUPERFAMILY SSF56300 1 352 5.99E-48 T 11-10-2018 AMK58_21475 7ffc4102f67952da3f3960c9eccccbd8 418 Gene3D G3DSA:3.60.21.10 1 287 6.7E-74 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like AMK58_00525 3a2e0aef4c022b8fca952f810a810131 445 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 337 407 1.3E-7 T 11-10-2018 IPR019489 Clp ATPase, C-terminal AMK58_00525 3a2e0aef4c022b8fca952f810a810131 445 Gene3D G3DSA:1.10.8.60 337 442 7.8E-40 T 11-10-2018 AMK58_00525 3a2e0aef4c022b8fca952f810a810131 445 Pfam PF07724 AAA domain (Cdc48 subfamily) 200 331 2.4E-38 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMK58_00525 3a2e0aef4c022b8fca952f810a810131 445 SMART SM00382 58 334 1.6E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_00525 3a2e0aef4c022b8fca952f810a810131 445 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 10 445 42.121 T 11-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 AMK58_00525 3a2e0aef4c022b8fca952f810a810131 445 SMART SM01086 337 431 2.7E-25 T 11-10-2018 IPR019489 Clp ATPase, C-terminal AMK58_00525 3a2e0aef4c022b8fca952f810a810131 445 SUPERFAMILY SSF52540 15 441 2.68E-87 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_00525 3a2e0aef4c022b8fca952f810a810131 445 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 14 445 2.0E-186 T 11-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 AMK58_00525 3a2e0aef4c022b8fca952f810a810131 445 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 62 112 1.7E-6 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMK58_07435 86768da66e3180e51bf6b18ffd0040e9 288 SMART SM00342 202 284 9.0E-20 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMK58_07435 86768da66e3180e51bf6b18ffd0040e9 288 SUPERFAMILY SSF51215 49 171 3.4E-5 T 11-10-2018 IPR037923 Transcription regulator HTH-like AMK58_07435 86768da66e3180e51bf6b18ffd0040e9 288 Gene3D G3DSA:1.10.10.60 186 288 2.6E-22 T 11-10-2018 AMK58_07435 86768da66e3180e51bf6b18ffd0040e9 288 SUPERFAMILY SSF46689 238 286 7.17E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_07435 86768da66e3180e51bf6b18ffd0040e9 288 Pfam PF12833 Helix-turn-helix domain 209 284 3.6E-16 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMK58_07435 86768da66e3180e51bf6b18ffd0040e9 288 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 238 280 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMK58_24125 e4df0add7386519b0dcfbffe711583a2 276 SUPERFAMILY SSF52540 49 236 1.95E-26 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_24125 e4df0add7386519b0dcfbffe711583a2 276 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 18 242 3.9E-96 T 11-10-2018 IPR022488 Polyphosphate kinase-2-related AMK58_24125 e4df0add7386519b0dcfbffe711583a2 276 TIGRFAM TIGR03707 PPK2_P_aer: polyphosphate kinase 2 17 244 5.5E-107 T 11-10-2018 IPR022486 Polyphosphate kinase 2, PA0141 GO:0006793|GO:0008976 KEGG: 00190+2.7.4.1 AMK58_24125 e4df0add7386519b0dcfbffe711583a2 276 Gene3D G3DSA:3.40.50.300 1 255 2.2E-89 T 11-10-2018 AMK58_24125 e4df0add7386519b0dcfbffe711583a2 276 PIRSF PIRSF028756 1 272 6.5E-115 T 11-10-2018 IPR016898 Polyphosphate kinase 2 KEGG: 00190+2.7.4.1 AMK58_25840 309c67b3d162ed2d66a30b440276b06e 370 Gene3D G3DSA:3.40.50.150 176 335 2.1E-19 T 11-10-2018 AMK58_25840 309c67b3d162ed2d66a30b440276b06e 370 SUPERFAMILY SSF53335 176 365 3.2E-24 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_25840 309c67b3d162ed2d66a30b440276b06e 370 Pfam PF05050 Methyltransferase FkbM domain 181 348 1.2E-13 T 11-10-2018 IPR006342 Methyltransferase FkbM AMK58_25840 309c67b3d162ed2d66a30b440276b06e 370 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 179 323 9.7E-21 T 11-10-2018 IPR006342 Methyltransferase FkbM AMK58_11710 42d5bbe60ebc2181c76c8794af2a0bcf 521 Gene3D G3DSA:3.40.1450.10 81 311 4.2E-205 T 11-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_11710 42d5bbe60ebc2181c76c8794af2a0bcf 521 SUPERFAMILY SSF53649 8 511 5.63E-75 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 AMK58_11710 42d5bbe60ebc2181c76c8794af2a0bcf 521 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 86 296 1.4E-71 T 11-10-2018 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_11710 42d5bbe60ebc2181c76c8794af2a0bcf 521 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 9 511 6.7E-206 T 11-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_11710 42d5bbe60ebc2181c76c8794af2a0bcf 521 PIRSF PIRSF001492 2 514 1.4E-198 T 11-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_11710 42d5bbe60ebc2181c76c8794af2a0bcf 521 SUPERFAMILY SSF64158 81 300 1.09E-75 T 11-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_11710 42d5bbe60ebc2181c76c8794af2a0bcf 521 Gene3D G3DSA:3.40.720.10 9 511 4.2E-205 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 AMK58_11710 42d5bbe60ebc2181c76c8794af2a0bcf 521 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 8 512 47.746 T 11-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_11710 42d5bbe60ebc2181c76c8794af2a0bcf 521 Pfam PF01676 Metalloenzyme superfamily 9 500 2.8E-73 T 11-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 AMK58_16860 f0f1ba947f25b8ddd7033681e2b1370f 407 Gene3D G3DSA:2.70.70.10 257 390 4.8E-38 T 11-10-2018 IPR011055 Duplicated hybrid motif AMK58_16860 f0f1ba947f25b8ddd7033681e2b1370f 407 SUPERFAMILY SSF51261 252 387 1.36E-45 T 11-10-2018 IPR011055 Duplicated hybrid motif AMK58_16860 f0f1ba947f25b8ddd7033681e2b1370f 407 Pfam PF01551 Peptidase family M23 292 386 1.6E-29 T 11-10-2018 IPR016047 Peptidase M23 AMK58_16860 f0f1ba947f25b8ddd7033681e2b1370f 407 SMART SM00257 28 72 3.5E-11 T 11-10-2018 IPR018392 LysM domain AMK58_16860 f0f1ba947f25b8ddd7033681e2b1370f 407 SMART SM00257 76 120 1.1E-9 T 11-10-2018 IPR018392 LysM domain AMK58_16860 f0f1ba947f25b8ddd7033681e2b1370f 407 Gene3D G3DSA:3.10.350.10 76 120 7.8E-12 T 11-10-2018 IPR036779 LysM domain superfamily AMK58_16860 f0f1ba947f25b8ddd7033681e2b1370f 407 SUPERFAMILY SSF54106 76 120 5.49E-9 T 11-10-2018 AMK58_16860 f0f1ba947f25b8ddd7033681e2b1370f 407 Gene3D G3DSA:3.10.350.10 17 75 6.4E-12 T 11-10-2018 IPR036779 LysM domain superfamily AMK58_16860 f0f1ba947f25b8ddd7033681e2b1370f 407 SUPERFAMILY SSF54106 30 73 1.7E-8 T 11-10-2018 AMK58_16860 f0f1ba947f25b8ddd7033681e2b1370f 407 Pfam PF01476 LysM domain 30 72 1.1E-11 T 11-10-2018 IPR018392 LysM domain AMK58_16860 f0f1ba947f25b8ddd7033681e2b1370f 407 Pfam PF01476 LysM domain 77 120 1.9E-10 T 11-10-2018 IPR018392 LysM domain AMK58_07095 55dba61664e3ffa89a88006805166915 290 Pfam PF05239 PRC-barrel domain 96 170 8.4E-12 T 11-10-2018 IPR027275 PRC-barrel domain AMK58_07095 55dba61664e3ffa89a88006805166915 290 Gene3D G3DSA:2.30.30.240 88 177 4.6E-23 T 11-10-2018 AMK58_07095 55dba61664e3ffa89a88006805166915 290 SUPERFAMILY SSF50346 96 209 6.47E-21 T 11-10-2018 IPR011033 PRC-barrel-like superfamily AMK58_15480 88c1171370ca8104a521dc4e78c27f16 189 Pfam PF00355 Rieske [2Fe-2S] domain 115 174 8.7E-11 T 11-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMK58_15480 88c1171370ca8104a521dc4e78c27f16 189 Gene3D G3DSA:2.102.10.10 54 186 5.4E-53 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMK58_15480 88c1171370ca8104a521dc4e78c27f16 189 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 22 46 4.0E-5 T 11-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal AMK58_15480 88c1171370ca8104a521dc4e78c27f16 189 PRINTS PR00162 Rieske 2Fe-2S subunit signature 122 133 9.7E-17 T 11-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 AMK58_15480 88c1171370ca8104a521dc4e78c27f16 189 PRINTS PR00162 Rieske 2Fe-2S subunit signature 149 161 9.7E-17 T 11-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 AMK58_15480 88c1171370ca8104a521dc4e78c27f16 189 PRINTS PR00162 Rieske 2Fe-2S subunit signature 161 173 9.7E-17 T 11-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 AMK58_15480 88c1171370ca8104a521dc4e78c27f16 189 Gene3D G3DSA:1.20.5.510 14 53 4.0E-18 T 11-10-2018 AMK58_15480 88c1171370ca8104a521dc4e78c27f16 189 Pfam PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal 18 53 9.7E-20 T 11-10-2018 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 AMK58_15480 88c1171370ca8104a521dc4e78c27f16 189 SUPERFAMILY SSF50022 44 185 6.29E-41 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMK58_15480 88c1171370ca8104a521dc4e78c27f16 189 TIGRFAM TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 22 189 2.2E-70 T 11-10-2018 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 AMK58_12980 86ed1d8f81cdee2caf4ed69c9209bfe0 303 SUPERFAMILY SSF103481 46 138 3.4E-12 T 11-10-2018 AMK58_12980 86ed1d8f81cdee2caf4ed69c9209bfe0 303 SUPERFAMILY SSF103481 203 301 1.57E-10 T 11-10-2018 AMK58_12980 86ed1d8f81cdee2caf4ed69c9209bfe0 303 Pfam PF00892 EamA-like transporter family 4 136 4.0E-15 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_12980 86ed1d8f81cdee2caf4ed69c9209bfe0 303 Pfam PF00892 EamA-like transporter family 163 301 1.0E-15 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_02570 e6654010c6676f1fdeec5435e4b636b7 398 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 266 291 - T 11-10-2018 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMK58_02570 e6654010c6676f1fdeec5435e4b636b7 398 Pfam PF08442 ATP-grasp domain 2 211 1.6E-77 T 11-10-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMK58_02570 e6654010c6676f1fdeec5435e4b636b7 398 Gene3D G3DSA:3.30.1490.20 21 113 5.2E-95 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMK58_02570 e6654010c6676f1fdeec5435e4b636b7 398 SUPERFAMILY SSF56059 1 247 1.79E-83 T 11-10-2018 AMK58_02570 e6654010c6676f1fdeec5435e4b636b7 398 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 394 5.8E-162 T 11-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMK58_02570 e6654010c6676f1fdeec5435e4b636b7 398 PIRSF PIRSF001554 1 397 1.5E-152 T 11-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMK58_02570 e6654010c6676f1fdeec5435e4b636b7 398 SUPERFAMILY SSF52210 248 394 3.53E-57 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMK58_02570 e6654010c6676f1fdeec5435e4b636b7 398 Gene3D G3DSA:3.40.50.261 249 397 3.1E-61 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMK58_02570 e6654010c6676f1fdeec5435e4b636b7 398 Pfam PF00549 CoA-ligase 271 391 6.7E-28 T 11-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMK58_02570 e6654010c6676f1fdeec5435e4b636b7 398 Hamap MF_00558 Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. 1 395 44.8 T 11-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMK58_02570 e6654010c6676f1fdeec5435e4b636b7 398 Gene3D G3DSA:3.30.470.20 1 243 5.2E-95 T 11-10-2018 AMK58_25270 2668dfbc314f80139e652c17fc7c7456 113 Gene3D G3DSA:2.30.330.10 25 112 4.3E-28 T 11-10-2018 IPR036429 SpoA-like superfamily AMK58_25270 2668dfbc314f80139e652c17fc7c7456 113 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 33 108 3.4E-28 T 11-10-2018 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 AMK58_25270 2668dfbc314f80139e652c17fc7c7456 113 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 35 106 1.2E-22 T 11-10-2018 IPR001543 Surface presentation of antigen (SpoA) AMK58_25270 2668dfbc314f80139e652c17fc7c7456 113 PRINTS PR00956 Flagellar motor switch protein FliN signature 35 51 1.5E-23 T 11-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 AMK58_25270 2668dfbc314f80139e652c17fc7c7456 113 PRINTS PR00956 Flagellar motor switch protein FliN signature 68 81 1.5E-23 T 11-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 AMK58_25270 2668dfbc314f80139e652c17fc7c7456 113 PRINTS PR00956 Flagellar motor switch protein FliN signature 52 68 1.5E-23 T 11-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 AMK58_25270 2668dfbc314f80139e652c17fc7c7456 113 PRINTS PR00956 Flagellar motor switch protein FliN signature 81 96 1.5E-23 T 11-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 AMK58_25270 2668dfbc314f80139e652c17fc7c7456 113 SUPERFAMILY SSF101801 33 108 1.44E-20 T 11-10-2018 IPR036429 SpoA-like superfamily AMK58_29120 373b2feb47118366aa1ed1a781ec0999 733 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 167 185 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_29120 373b2feb47118366aa1ed1a781ec0999 733 PRINTS PR00313 NodO calcium binding signature 159 170 1.3E-12 T 11-10-2018 AMK58_29120 373b2feb47118366aa1ed1a781ec0999 733 PRINTS PR00313 NodO calcium binding signature 250 258 1.3E-12 T 11-10-2018 AMK58_29120 373b2feb47118366aa1ed1a781ec0999 733 PRINTS PR00313 NodO calcium binding signature 345 354 1.3E-12 T 11-10-2018 AMK58_29120 373b2feb47118366aa1ed1a781ec0999 733 PRINTS PR00313 NodO calcium binding signature 304 312 1.3E-12 T 11-10-2018 AMK58_29120 373b2feb47118366aa1ed1a781ec0999 733 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 294 311 0.014 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_29120 373b2feb47118366aa1ed1a781ec0999 733 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 276 293 0.59 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_29120 373b2feb47118366aa1ed1a781ec0999 733 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 313 329 1.7 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_29120 373b2feb47118366aa1ed1a781ec0999 733 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 259 275 0.0011 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_29120 373b2feb47118366aa1ed1a781ec0999 733 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 243 257 0.052 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_29120 373b2feb47118366aa1ed1a781ec0999 733 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 170 185 0.18 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_29120 373b2feb47118366aa1ed1a781ec0999 733 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 614 631 0.035 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_29120 373b2feb47118366aa1ed1a781ec0999 733 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 152 169 6.1E-4 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_29120 373b2feb47118366aa1ed1a781ec0999 733 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 340 352 0.25 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_29120 373b2feb47118366aa1ed1a781ec0999 733 SUPERFAMILY SSF51120 479 701 4.36E-20 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_29120 373b2feb47118366aa1ed1a781ec0999 733 SUPERFAMILY SSF51120 227 379 1.96E-23 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_29120 373b2feb47118366aa1ed1a781ec0999 733 Pfam PF14252 Domain of unknown function (DUF4347) 2 129 8.5E-23 T 11-10-2018 IPR025592 Domain of unknown function DUF4347 AMK58_29120 373b2feb47118366aa1ed1a781ec0999 733 SUPERFAMILY SSF51120 133 198 3.01E-13 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_29120 373b2feb47118366aa1ed1a781ec0999 733 Gene3D G3DSA:2.150.10.10 217 279 3.5E-12 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_29120 373b2feb47118366aa1ed1a781ec0999 733 Gene3D G3DSA:2.150.10.10 128 216 1.9E-15 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_29120 373b2feb47118366aa1ed1a781ec0999 733 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 158 176 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_29120 373b2feb47118366aa1ed1a781ec0999 733 Gene3D G3DSA:2.150.10.10 280 427 1.4E-13 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_29120 373b2feb47118366aa1ed1a781ec0999 733 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 291 309 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_29120 373b2feb47118366aa1ed1a781ec0999 733 Gene3D G3DSA:2.150.10.10 552 714 1.5E-12 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_29120 373b2feb47118366aa1ed1a781ec0999 733 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 282 300 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_00700 8d7267f5810bc3ab55c4cb6d8bd0dc73 449 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 1 428 2.2E-135 T 11-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 AMK58_00700 8d7267f5810bc3ab55c4cb6d8bd0dc73 449 SUPERFAMILY SSF102114 115 363 3.66E-57 T 11-10-2018 AMK58_00700 8d7267f5810bc3ab55c4cb6d8bd0dc73 449 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 143 163 - T 11-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 AMK58_00700 8d7267f5810bc3ab55c4cb6d8bd0dc73 449 SMART SM00729 139 359 3.7E-55 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMK58_00700 8d7267f5810bc3ab55c4cb6d8bd0dc73 449 Pfam PF04055 Radical SAM superfamily 145 317 7.4E-27 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMK58_00700 8d7267f5810bc3ab55c4cb6d8bd0dc73 449 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 1 431 68.199 T 11-10-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 AMK58_00700 8d7267f5810bc3ab55c4cb6d8bd0dc73 449 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 1 430 2.9E-137 T 11-10-2018 AMK58_00700 8d7267f5810bc3ab55c4cb6d8bd0dc73 449 Pfam PF01938 TRAM domain 370 430 2.1E-7 T 11-10-2018 IPR002792 TRAM domain AMK58_00700 8d7267f5810bc3ab55c4cb6d8bd0dc73 449 Pfam PF00919 Uncharacterized protein family UPF0004 1 95 3.2E-23 T 11-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 AMK58_00700 8d7267f5810bc3ab55c4cb6d8bd0dc73 449 Gene3D G3DSA:3.40.50.12160 1 127 1.4E-26 T 11-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily AMK58_00700 8d7267f5810bc3ab55c4cb6d8bd0dc73 449 Gene3D G3DSA:3.80.30.20 138 373 1.1E-77 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe AMK58_07190 7cfd9ba2c4599f9bd0cefbdda6b1837f 74 Gene3D G3DSA:1.10.1740.70 2 74 4.1E-23 T 11-10-2018 AMK58_07190 7cfd9ba2c4599f9bd0cefbdda6b1837f 74 SUPERFAMILY SSF140376 4 73 2.09E-19 T 11-10-2018 IPR037205 ChaB superfamily AMK58_07190 7cfd9ba2c4599f9bd0cefbdda6b1837f 74 Pfam PF06150 ChaB 9 73 2.4E-19 T 11-10-2018 IPR009317 ChaB AMK58_11205 feda7f5393c3395dd641933d814ead80 367 Gene3D G3DSA:3.40.50.1820 38 311 2.0E-51 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_11205 feda7f5393c3395dd641933d814ead80 367 Pfam PF12146 Serine aminopeptidase, S33 61 291 2.4E-53 T 11-10-2018 IPR022742 Serine aminopeptidase, S33 AMK58_11205 feda7f5393c3395dd641933d814ead80 367 SUPERFAMILY SSF53474 24 309 2.9E-36 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_04080 f3ca3f6cfc4b7583e07f659c4645d55a 295 SUPERFAMILY SSF55681 15 290 1.96E-134 T 11-10-2018 AMK58_04080 f3ca3f6cfc4b7583e07f659c4645d55a 295 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 16 290 8.9E-151 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMK58_04080 f3ca3f6cfc4b7583e07f659c4645d55a 295 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 120 144 2.1E-66 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMK58_04080 f3ca3f6cfc4b7583e07f659c4645d55a 295 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 255 271 2.1E-66 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMK58_04080 f3ca3f6cfc4b7583e07f659c4645d55a 295 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 146 166 2.1E-66 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMK58_04080 f3ca3f6cfc4b7583e07f659c4645d55a 295 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 89 109 2.1E-66 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMK58_04080 f3ca3f6cfc4b7583e07f659c4645d55a 295 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 68 83 2.1E-66 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMK58_04080 f3ca3f6cfc4b7583e07f659c4645d55a 295 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 169 184 2.1E-66 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMK58_04080 f3ca3f6cfc4b7583e07f659c4645d55a 295 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 15 290 7.6E-146 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMK58_04080 f3ca3f6cfc4b7583e07f659c4645d55a 295 Gene3D G3DSA:3.30.930.10 5 218 7.7E-110 T 11-10-2018 AMK58_04080 f3ca3f6cfc4b7583e07f659c4645d55a 295 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 14 295 58.615 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMK58_04080 f3ca3f6cfc4b7583e07f659c4645d55a 295 Gene3D G3DSA:1.20.58.180 219 293 1.3E-33 T 11-10-2018 AMK58_24780 c1ef9dabb4b217f1feadde7248ec3e8a 1106 Gene3D G3DSA:3.30.450.20 332 470 8.4E-20 T 11-10-2018 AMK58_24780 c1ef9dabb4b217f1feadde7248ec3e8a 1106 PRINTS PR00344 Bacterial sensor protein C-terminal signature 781 791 1.1E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_24780 c1ef9dabb4b217f1feadde7248ec3e8a 1106 PRINTS PR00344 Bacterial sensor protein C-terminal signature 798 816 1.1E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_24780 c1ef9dabb4b217f1feadde7248ec3e8a 1106 PRINTS PR00344 Bacterial sensor protein C-terminal signature 822 835 1.1E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_24780 c1ef9dabb4b217f1feadde7248ec3e8a 1106 PRINTS PR00344 Bacterial sensor protein C-terminal signature 763 777 1.1E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_24780 c1ef9dabb4b217f1feadde7248ec3e8a 1106 SMART SM00448 859 975 1.2E-36 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_24780 c1ef9dabb4b217f1feadde7248ec3e8a 1106 Gene3D G3DSA:1.10.287.130 588 672 5.5E-26 T 11-10-2018 AMK58_24780 c1ef9dabb4b217f1feadde7248ec3e8a 1106 SUPERFAMILY SSF55874 663 834 1.7E-43 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_24780 c1ef9dabb4b217f1feadde7248ec3e8a 1106 Pfam PF00512 His Kinase A (phospho-acceptor) domain 609 674 1.6E-17 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_24780 c1ef9dabb4b217f1feadde7248ec3e8a 1106 SMART SM00388 609 674 1.8E-22 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_24780 c1ef9dabb4b217f1feadde7248ec3e8a 1106 Pfam PF01627 Hpt domain 1023 1099 2.8E-6 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMK58_24780 c1ef9dabb4b217f1feadde7248ec3e8a 1106 SUPERFAMILY SSF55785 336 459 9.07E-13 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_24780 c1ef9dabb4b217f1feadde7248ec3e8a 1106 SMART SM00086 419 461 0.019 T 11-10-2018 IPR001610 PAC motif AMK58_24780 c1ef9dabb4b217f1feadde7248ec3e8a 1106 SMART SM00086 549 589 6.7 T 11-10-2018 IPR001610 PAC motif AMK58_24780 c1ef9dabb4b217f1feadde7248ec3e8a 1106 SMART SM00387 721 838 4.2E-38 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_24780 c1ef9dabb4b217f1feadde7248ec3e8a 1106 SUPERFAMILY SSF47384 595 675 8.83E-20 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_24780 c1ef9dabb4b217f1feadde7248ec3e8a 1106 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 721 834 5.7E-29 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_24780 c1ef9dabb4b217f1feadde7248ec3e8a 1106 Gene3D G3DSA:3.30.450.20 199 286 4.4E-18 T 11-10-2018 AMK58_24780 c1ef9dabb4b217f1feadde7248ec3e8a 1106 Gene3D G3DSA:3.30.450.20 50 196 7.1E-33 T 11-10-2018 AMK58_24780 c1ef9dabb4b217f1feadde7248ec3e8a 1106 Gene3D G3DSA:3.30.450.20 471 587 5.0E-26 T 11-10-2018 AMK58_24780 c1ef9dabb4b217f1feadde7248ec3e8a 1106 SMART SM00091 346 412 95.0 T 11-10-2018 IPR000014 PAS domain AMK58_24780 c1ef9dabb4b217f1feadde7248ec3e8a 1106 SMART SM00091 473 539 2.0E-8 T 11-10-2018 IPR000014 PAS domain AMK58_24780 c1ef9dabb4b217f1feadde7248ec3e8a 1106 Gene3D G3DSA:3.40.50.2300 843 980 6.9E-38 T 11-10-2018 AMK58_24780 c1ef9dabb4b217f1feadde7248ec3e8a 1106 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 470 596 1.1E-25 T 11-10-2018 IPR000014 PAS domain AMK58_24780 c1ef9dabb4b217f1feadde7248ec3e8a 1106 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 343 468 7.4E-6 T 11-10-2018 IPR000014 PAS domain AMK58_24780 c1ef9dabb4b217f1feadde7248ec3e8a 1106 SUPERFAMILY SSF47226 999 1102 9.55E-15 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMK58_24780 c1ef9dabb4b217f1feadde7248ec3e8a 1106 Pfam PF08448 PAS fold 356 463 1.7E-7 T 11-10-2018 IPR013656 PAS fold-4 AMK58_24780 c1ef9dabb4b217f1feadde7248ec3e8a 1106 Gene3D G3DSA:1.20.120.160 993 1104 5.3E-14 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMK58_24780 c1ef9dabb4b217f1feadde7248ec3e8a 1106 Gene3D G3DSA:3.30.565.10 673 837 2.3E-47 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_24780 c1ef9dabb4b217f1feadde7248ec3e8a 1106 Pfam PF00072 Response regulator receiver domain 861 975 2.8E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_24780 c1ef9dabb4b217f1feadde7248ec3e8a 1106 SUPERFAMILY SSF52172 857 980 2.42E-36 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_24780 c1ef9dabb4b217f1feadde7248ec3e8a 1106 Pfam PF00989 PAS fold 474 585 4.4E-14 T 11-10-2018 IPR013767 PAS fold GO:0006355 AMK58_24780 c1ef9dabb4b217f1feadde7248ec3e8a 1106 SUPERFAMILY SSF55785 458 586 3.14E-25 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_23465 4f418aa0b757669bc850c569941b6b3f 341 Gene3D G3DSA:3.40.190.10 191 295 2.4E-27 T 11-10-2018 AMK58_23465 4f418aa0b757669bc850c569941b6b3f 341 SUPERFAMILY SSF53850 120 307 4.16E-26 T 11-10-2018 AMK58_23465 4f418aa0b757669bc850c569941b6b3f 341 Gene3D G3DSA:3.40.190.10 120 304 2.4E-27 T 11-10-2018 AMK58_23465 4f418aa0b757669bc850c569941b6b3f 341 Gene3D G3DSA:1.10.10.10 29 109 2.9E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_23465 4f418aa0b757669bc850c569941b6b3f 341 SUPERFAMILY SSF46785 28 139 1.72E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_23465 4f418aa0b757669bc850c569941b6b3f 341 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 67 78 9.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_23465 4f418aa0b757669bc850c569941b6b3f 341 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 57 67 9.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_23465 4f418aa0b757669bc850c569941b6b3f 341 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 9.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_23465 4f418aa0b757669bc850c569941b6b3f 341 Pfam PF03466 LysR substrate binding domain 120 308 2.1E-25 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_23465 4f418aa0b757669bc850c569941b6b3f 341 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 31 89 2.3E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_09595 4e5d0bccc421bc7a1550cddb71f73af1 294 Pfam PF00140 Sigma-70 factor, region 1.2 17 43 3.7E-8 T 11-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMK58_09595 4e5d0bccc421bc7a1550cddb71f73af1 294 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 48 282 4.7E-32 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMK58_09595 4e5d0bccc421bc7a1550cddb71f73af1 294 Pfam PF04545 Sigma-70, region 4 230 281 1.6E-16 T 11-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 AMK58_09595 4e5d0bccc421bc7a1550cddb71f73af1 294 PRINTS PR00046 Major sigma-70 factor signature 253 268 5.5E-22 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_09595 4e5d0bccc421bc7a1550cddb71f73af1 294 PRINTS PR00046 Major sigma-70 factor signature 77 90 5.5E-22 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_09595 4e5d0bccc421bc7a1550cddb71f73af1 294 PRINTS PR00046 Major sigma-70 factor signature 234 246 5.5E-22 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_09595 4e5d0bccc421bc7a1550cddb71f73af1 294 PRINTS PR00046 Major sigma-70 factor signature 101 109 5.5E-22 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_09595 4e5d0bccc421bc7a1550cddb71f73af1 294 PRINTS PR00046 Major sigma-70 factor signature 268 279 5.5E-22 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_09595 4e5d0bccc421bc7a1550cddb71f73af1 294 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 253 279 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_09595 4e5d0bccc421bc7a1550cddb71f73af1 294 Gene3D G3DSA:1.20.140.160 137 286 1.5E-13 T 11-10-2018 AMK58_09595 4e5d0bccc421bc7a1550cddb71f73af1 294 Pfam PF04542 Sigma-70 region 2 53 118 9.7E-17 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMK58_09595 4e5d0bccc421bc7a1550cddb71f73af1 294 SUPERFAMILY SSF88659 190 287 3.36E-21 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMK58_09595 4e5d0bccc421bc7a1550cddb71f73af1 294 PIRSF PIRSF000770 1 293 5.6E-38 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_09595 4e5d0bccc421bc7a1550cddb71f73af1 294 Gene3D G3DSA:1.10.601.10 9 120 7.1E-32 T 11-10-2018 AMK58_09595 4e5d0bccc421bc7a1550cddb71f73af1 294 SUPERFAMILY SSF88946 11 121 3.45E-40 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMK58_09595 4e5d0bccc421bc7a1550cddb71f73af1 294 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 1 285 51.4 T 11-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMK58_09595 4e5d0bccc421bc7a1550cddb71f73af1 294 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 15 284 1.4E-111 T 11-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMK58_13685 7f1b3b0e553811c3bf063332ed723312 347 Pfam PF00248 Aldo/keto reductase family 16 339 3.9E-74 T 11-10-2018 IPR023210 NADP-dependent oxidoreductase domain AMK58_13685 7f1b3b0e553811c3bf063332ed723312 347 PRINTS PR00069 Aldo-keto reductase signature 117 135 5.0E-9 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMK58_13685 7f1b3b0e553811c3bf063332ed723312 347 PRINTS PR00069 Aldo-keto reductase signature 165 182 5.0E-9 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMK58_13685 7f1b3b0e553811c3bf063332ed723312 347 SUPERFAMILY SSF51430 1 347 1.96E-109 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMK58_13685 7f1b3b0e553811c3bf063332ed723312 347 Gene3D G3DSA:3.20.20.100 1 347 6.9E-131 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMK58_26870 6728525054b8b6b69131b7632d50fa91 333 PRINTS PR00111 Alpha/beta hydrolase fold signature 140 153 5.1E-7 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_26870 6728525054b8b6b69131b7632d50fa91 333 PRINTS PR00111 Alpha/beta hydrolase fold signature 92 107 5.1E-7 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_26870 6728525054b8b6b69131b7632d50fa91 333 PRINTS PR00111 Alpha/beta hydrolase fold signature 254 268 5.1E-7 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_26870 6728525054b8b6b69131b7632d50fa91 333 SUPERFAMILY SSF53474 46 314 6.7E-38 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_26870 6728525054b8b6b69131b7632d50fa91 333 Gene3D G3DSA:3.40.50.1820 36 316 4.5E-49 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_26870 6728525054b8b6b69131b7632d50fa91 333 Pfam PF12146 Serine aminopeptidase, S33 63 299 1.1E-56 T 11-10-2018 IPR022742 Serine aminopeptidase, S33 AMK58_09865 dfebb5841b9f8264cc477806fccd6305 415 Gene3D G3DSA:3.40.50.720 14 312 3.8E-104 T 11-10-2018 AMK58_09865 dfebb5841b9f8264cc477806fccd6305 415 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 13 326 5.1E-33 T 11-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 AMK58_09865 dfebb5841b9f8264cc477806fccd6305 415 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 154 181 - T 11-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 AMK58_09865 dfebb5841b9f8264cc477806fccd6305 415 SUPERFAMILY SSF55021 338 410 6.11E-14 T 11-10-2018 AMK58_09865 dfebb5841b9f8264cc477806fccd6305 415 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 200 222 - T 11-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AMK58_09865 dfebb5841b9f8264cc477806fccd6305 415 SUPERFAMILY SSF51735 108 295 8.35E-57 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_09865 dfebb5841b9f8264cc477806fccd6305 415 Gene3D G3DSA:3.40.50.720 109 297 3.8E-104 T 11-10-2018 AMK58_09865 dfebb5841b9f8264cc477806fccd6305 415 Gene3D G3DSA:3.30.70.260 328 410 2.3E-27 T 11-10-2018 AMK58_09865 dfebb5841b9f8264cc477806fccd6305 415 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 118 294 3.0E-51 T 11-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AMK58_09865 dfebb5841b9f8264cc477806fccd6305 415 SUPERFAMILY SSF52283 8 132 1.34E-44 T 11-10-2018 AMK58_21600 5c75e7bcc486051973d093262bb0dc7f 144 SUPERFAMILY SSF50692 2 118 1.12E-41 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily AMK58_21600 5c75e7bcc486051973d093262bb0dc7f 144 Gene3D G3DSA:2.40.40.20 1 122 8.0E-42 T 11-10-2018 AMK58_21600 5c75e7bcc486051973d093262bb0dc7f 144 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 126 51.906 T 11-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 AMK58_21600 5c75e7bcc486051973d093262bb0dc7f 144 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 4 91 7.0E-35 T 11-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 AMK58_21600 5c75e7bcc486051973d093262bb0dc7f 144 Pfam PF02261 Aspartate decarboxylase 2 113 6.3E-41 T 11-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 AMK58_21600 5c75e7bcc486051973d093262bb0dc7f 144 PIRSF PIRSF006246 1 127 2.3E-48 T 11-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 AMK58_21600 5c75e7bcc486051973d093262bb0dc7f 144 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 3 117 8.3E-35 T 11-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 AMK58_13875 5c75e7bcc486051973d093262bb0dc7f 144 SUPERFAMILY SSF50692 2 118 1.12E-41 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily AMK58_13875 5c75e7bcc486051973d093262bb0dc7f 144 Gene3D G3DSA:2.40.40.20 1 122 8.0E-42 T 11-10-2018 AMK58_13875 5c75e7bcc486051973d093262bb0dc7f 144 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 126 51.906 T 11-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 AMK58_13875 5c75e7bcc486051973d093262bb0dc7f 144 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 4 91 7.0E-35 T 11-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 AMK58_13875 5c75e7bcc486051973d093262bb0dc7f 144 Pfam PF02261 Aspartate decarboxylase 2 113 6.3E-41 T 11-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 AMK58_13875 5c75e7bcc486051973d093262bb0dc7f 144 PIRSF PIRSF006246 1 127 2.3E-48 T 11-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 AMK58_13875 5c75e7bcc486051973d093262bb0dc7f 144 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 3 117 8.3E-35 T 11-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 AMK58_01010 4389b4df814ff9907743099ba8fd6efb 822 SUPERFAMILY SSF81653 307 399 6.15E-18 T 11-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 AMK58_01010 4389b4df814ff9907743099ba8fd6efb 822 Gene3D G3DSA:3.40.50.1000 480 715 1.5E-57 T 11-10-2018 IPR023214 HAD superfamily AMK58_01010 4389b4df814ff9907743099ba8fd6efb 822 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 220 781 5.8E-147 T 11-10-2018 AMK58_01010 4389b4df814ff9907743099ba8fd6efb 822 Pfam PF00702 haloacid dehalogenase-like hydrolase 496 692 5.5E-34 T 11-10-2018 AMK58_01010 4389b4df814ff9907743099ba8fd6efb 822 Gene3D G3DSA:3.40.1110.10 510 611 1.5E-57 T 11-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AMK58_01010 4389b4df814ff9907743099ba8fd6efb 822 Gene3D G3DSA:3.30.70.100 80 150 1.4E-14 T 11-10-2018 AMK58_01010 4389b4df814ff9907743099ba8fd6efb 822 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 270 511 5.9E-30 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AMK58_01010 4389b4df814ff9907743099ba8fd6efb 822 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 606 766 8.3E-27 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AMK58_01010 4389b4df814ff9907743099ba8fd6efb 822 Gene3D G3DSA:2.70.150.20 288 403 6.7E-25 T 11-10-2018 AMK58_01010 4389b4df814ff9907743099ba8fd6efb 822 Pfam PF12156 Putative metal-binding domain of cation transport ATPase 4 51 2.3E-9 T 11-10-2018 IPR021993 Putative metal-binding domain of cation transport ATPase AMK58_01010 4389b4df814ff9907743099ba8fd6efb 822 SUPERFAMILY SSF56784 498 779 5.38E-40 T 11-10-2018 IPR036412 HAD-like superfamily AMK58_01010 4389b4df814ff9907743099ba8fd6efb 822 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 237 781 4.2E-149 T 11-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AMK58_01010 4389b4df814ff9907743099ba8fd6efb 822 SUPERFAMILY SSF81665 263 766 2.22E-15 T 11-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 AMK58_01010 4389b4df814ff9907743099ba8fd6efb 822 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 679 698 6.7E-17 T 11-10-2018 AMK58_01010 4389b4df814ff9907743099ba8fd6efb 822 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 500 514 6.7E-17 T 11-10-2018 AMK58_01010 4389b4df814ff9907743099ba8fd6efb 822 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 604 615 6.7E-17 T 11-10-2018 AMK58_01010 4389b4df814ff9907743099ba8fd6efb 822 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 349 363 6.7E-17 T 11-10-2018 AMK58_01010 4389b4df814ff9907743099ba8fd6efb 822 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 626 636 6.7E-17 T 11-10-2018 AMK58_01010 4389b4df814ff9907743099ba8fd6efb 822 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 702 714 6.7E-17 T 11-10-2018 AMK58_01010 4389b4df814ff9907743099ba8fd6efb 822 Pfam PF00403 Heavy-metal-associated domain 86 145 3.7E-9 T 11-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AMK58_01010 4389b4df814ff9907743099ba8fd6efb 822 Pfam PF00122 E1-E2 ATPase 299 480 1.2E-43 T 11-10-2018 AMK58_01010 4389b4df814ff9907743099ba8fd6efb 822 SUPERFAMILY SSF55008 79 153 7.85E-18 T 11-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 AMK58_01010 4389b4df814ff9907743099ba8fd6efb 822 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 262 782 4.2E-103 T 11-10-2018 AMK58_01010 4389b4df814ff9907743099ba8fd6efb 822 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 502 508 - T 11-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 AMK58_10340 107f6bb04eea9f2700258f5f83719cfb 84 ProSitePatterns PS00056 Ribosomal protein S17 signature. 54 66 - T 11-10-2018 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10340 107f6bb04eea9f2700258f5f83719cfb 84 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 3 76 24.27 T 11-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_10340 107f6bb04eea9f2700258f5f83719cfb 84 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 3 74 8.5E-37 T 11-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_10340 107f6bb04eea9f2700258f5f83719cfb 84 Gene3D G3DSA:2.40.50.140 1 83 9.5E-35 T 11-10-2018 AMK58_10340 107f6bb04eea9f2700258f5f83719cfb 84 Pfam PF00366 Ribosomal protein S17 8 74 3.0E-32 T 11-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_10340 107f6bb04eea9f2700258f5f83719cfb 84 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 1 74 1.0E-26 T 11-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_10340 107f6bb04eea9f2700258f5f83719cfb 84 SUPERFAMILY SSF50249 3 74 1.67E-31 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_10340 107f6bb04eea9f2700258f5f83719cfb 84 PRINTS PR00973 Ribosomal protein S17 family signature 22 45 5.4E-13 T 11-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_10340 107f6bb04eea9f2700258f5f83719cfb 84 PRINTS PR00973 Ribosomal protein S17 family signature 64 71 5.4E-13 T 11-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_10340 107f6bb04eea9f2700258f5f83719cfb 84 PRINTS PR00973 Ribosomal protein S17 family signature 54 64 5.4E-13 T 11-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_27275 0f4af68edab4f6cea4740219f65f7bef 469 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 261 459 28.308 T 11-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 AMK58_27275 0f4af68edab4f6cea4740219f65f7bef 469 Pfam PF13500 AAA domain 262 453 2.3E-58 T 11-10-2018 AMK58_27275 0f4af68edab4f6cea4740219f65f7bef 469 SUPERFAMILY SSF52540 263 458 3.43E-46 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_27275 0f4af68edab4f6cea4740219f65f7bef 469 Pfam PF13489 Methyltransferase domain 32 181 1.9E-17 T 11-10-2018 AMK58_27275 0f4af68edab4f6cea4740219f65f7bef 469 Gene3D G3DSA:3.40.50.300 259 460 8.3E-55 T 11-10-2018 AMK58_27275 0f4af68edab4f6cea4740219f65f7bef 469 Gene3D G3DSA:3.40.50.150 10 175 5.7E-35 T 11-10-2018 AMK58_27275 0f4af68edab4f6cea4740219f65f7bef 469 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 265 420 5.3E-44 T 11-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 AMK58_27275 0f4af68edab4f6cea4740219f65f7bef 469 SUPERFAMILY SSF53335 10 256 1.37E-35 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_04025 ab85932b9eebff1d4039ec57f1f1125b 711 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 460 569 1.9E-19 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_04025 ab85932b9eebff1d4039ec57f1f1125b 711 SMART SM00387 459 571 5.6E-32 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_04025 ab85932b9eebff1d4039ec57f1f1125b 711 Gene3D G3DSA:3.30.450.20 39 193 3.0E-26 T 11-10-2018 AMK58_04025 ab85932b9eebff1d4039ec57f1f1125b 711 Pfam PF00512 His Kinase A (phospho-acceptor) domain 354 417 1.4E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_04025 ab85932b9eebff1d4039ec57f1f1125b 711 SMART SM00388 354 418 1.6E-7 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_04025 ab85932b9eebff1d4039ec57f1f1125b 711 Gene3D G3DSA:3.30.450.20 195 284 1.7E-16 T 11-10-2018 AMK58_04025 ab85932b9eebff1d4039ec57f1f1125b 711 SUPERFAMILY SSF52172 590 706 3.56E-27 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_04025 ab85932b9eebff1d4039ec57f1f1125b 711 Gene3D G3DSA:1.10.287.130 346 416 1.6E-17 T 11-10-2018 AMK58_04025 ab85932b9eebff1d4039ec57f1f1125b 711 Pfam PF00072 Response regulator receiver domain 594 701 7.8E-18 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_04025 ab85932b9eebff1d4039ec57f1f1125b 711 Gene3D G3DSA:3.30.565.10 419 574 1.5E-40 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_04025 ab85932b9eebff1d4039ec57f1f1125b 711 SMART SM00448 591 701 1.3E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_04025 ab85932b9eebff1d4039ec57f1f1125b 711 Gene3D G3DSA:3.40.50.2300 590 710 8.8E-28 T 11-10-2018 AMK58_04025 ab85932b9eebff1d4039ec57f1f1125b 711 SUPERFAMILY SSF47384 344 416 6.67E-9 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_04025 ab85932b9eebff1d4039ec57f1f1125b 711 PRINTS PR00344 Bacterial sensor protein C-terminal signature 518 528 5.4E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_04025 ab85932b9eebff1d4039ec57f1f1125b 711 PRINTS PR00344 Bacterial sensor protein C-terminal signature 500 514 5.4E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_04025 ab85932b9eebff1d4039ec57f1f1125b 711 PRINTS PR00344 Bacterial sensor protein C-terminal signature 531 549 5.4E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_04025 ab85932b9eebff1d4039ec57f1f1125b 711 PRINTS PR00344 Bacterial sensor protein C-terminal signature 555 568 5.4E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_04025 ab85932b9eebff1d4039ec57f1f1125b 711 SUPERFAMILY SSF55874 408 569 4.45E-39 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_15995 ddaf6a6829d51604d0d7185a092cf1cc 715 Gene3D G3DSA:3.30.1840.10 13 318 1.8E-99 T 11-10-2018 IPR036830 Polyphosphate kinase middle domain superfamily KEGG: 00190+2.7.4.1 AMK58_15995 ddaf6a6829d51604d0d7185a092cf1cc 715 Pfam PF02503 Polyphosphate kinase middle domain 134 327 7.7E-57 T 11-10-2018 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 AMK58_15995 ddaf6a6829d51604d0d7185a092cf1cc 715 Pfam PF13090 Polyphosphate kinase C-terminal domain 337 688 6.4E-154 T 11-10-2018 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 AMK58_15995 ddaf6a6829d51604d0d7185a092cf1cc 715 PIRSF PIRSF015589 2 705 6.8E-268 T 11-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 AMK58_15995 ddaf6a6829d51604d0d7185a092cf1cc 715 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 19 690 1.1E-289 T 11-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 AMK58_15995 ddaf6a6829d51604d0d7185a092cf1cc 715 Gene3D G3DSA:3.30.870.10 329 506 1.1E-72 T 11-10-2018 AMK58_15995 ddaf6a6829d51604d0d7185a092cf1cc 715 Hamap MF_00347 Polyphosphate kinase [ppk]. 17 693 27.9 T 11-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 AMK58_15995 ddaf6a6829d51604d0d7185a092cf1cc 715 SUPERFAMILY SSF56024 327 503 2.89E-58 T 11-10-2018 AMK58_15995 ddaf6a6829d51604d0d7185a092cf1cc 715 Gene3D G3DSA:3.30.870.10 507 690 8.3E-65 T 11-10-2018 AMK58_15995 ddaf6a6829d51604d0d7185a092cf1cc 715 SUPERFAMILY SSF56024 507 688 1.19E-66 T 11-10-2018 AMK58_15995 ddaf6a6829d51604d0d7185a092cf1cc 715 SUPERFAMILY SSF143724 122 319 6.28E-59 T 11-10-2018 AMK58_15995 ddaf6a6829d51604d0d7185a092cf1cc 715 Pfam PF13089 Polyphosphate kinase N-terminal domain 20 124 7.9E-39 T 11-10-2018 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 AMK58_15995 ddaf6a6829d51604d0d7185a092cf1cc 715 SUPERFAMILY SSF140356 17 120 1.2E-38 T 11-10-2018 IPR036832 Polyphosphate kinase N-terminal domain superfamily KEGG: 00190+2.7.4.1 AMK58_01055 c58cf40a1849284a7a03e2d0cfee3a05 234 Gene3D G3DSA:3.40.50.2300 2 131 2.7E-41 T 11-10-2018 AMK58_01055 c58cf40a1849284a7a03e2d0cfee3a05 234 SMART SM00448 7 120 2.3E-46 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_01055 c58cf40a1849284a7a03e2d0cfee3a05 234 Gene3D G3DSA:1.10.10.10 132 232 4.0E-36 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_01055 c58cf40a1849284a7a03e2d0cfee3a05 234 Pfam PF00072 Response regulator receiver domain 9 120 5.6E-31 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_01055 c58cf40a1849284a7a03e2d0cfee3a05 234 SMART SM00862 154 229 1.3E-27 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_01055 c58cf40a1849284a7a03e2d0cfee3a05 234 SUPERFAMILY SSF52172 7 129 3.42E-45 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_01055 c58cf40a1849284a7a03e2d0cfee3a05 234 SUPERFAMILY SSF46894 130 229 1.42E-32 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMK58_01055 c58cf40a1849284a7a03e2d0cfee3a05 234 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 8 230 4.0E-104 T 11-10-2018 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 AMK58_01055 c58cf40a1849284a7a03e2d0cfee3a05 234 Pfam PF00486 Transcriptional regulatory protein, C terminal 154 229 9.8E-28 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_11435 843491da8cc2816b177016756267f5c2 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 6.8E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_11435 843491da8cc2816b177016756267f5c2 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 6.8E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_11435 843491da8cc2816b177016756267f5c2 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 6.8E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_11435 843491da8cc2816b177016756267f5c2 298 SUPERFAMILY SSF46785 4 86 9.09E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_11435 843491da8cc2816b177016756267f5c2 298 Pfam PF03466 LysR substrate binding domain 91 290 5.4E-34 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_11435 843491da8cc2816b177016756267f5c2 298 Gene3D G3DSA:3.40.190.10 103 286 4.0E-45 T 11-10-2018 AMK58_11435 843491da8cc2816b177016756267f5c2 298 SUPERFAMILY SSF53850 93 292 1.99E-33 T 11-10-2018 AMK58_11435 843491da8cc2816b177016756267f5c2 298 Gene3D G3DSA:3.40.190.10 162 261 4.0E-45 T 11-10-2018 AMK58_11435 843491da8cc2816b177016756267f5c2 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 4.7E-20 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_11435 843491da8cc2816b177016756267f5c2 298 Gene3D G3DSA:1.10.10.10 7 89 2.9E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_12565 d6c85347a19296b7285474c2f0ccc78b 216 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 9 216 41.803 T 11-10-2018 IPR034332 Uracil phosphoribosyltransferase, bacterial-type KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 AMK58_12565 d6c85347a19296b7285474c2f0ccc78b 216 Pfam PF14681 Uracil phosphoribosyltransferase 13 215 3.3E-67 T 11-10-2018 AMK58_12565 d6c85347a19296b7285474c2f0ccc78b 216 SUPERFAMILY SSF53271 10 214 1.88E-60 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like AMK58_12565 d6c85347a19296b7285474c2f0ccc78b 216 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 12 216 1.2E-74 T 11-10-2018 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 AMK58_12565 d6c85347a19296b7285474c2f0ccc78b 216 Gene3D G3DSA:3.40.50.2020 1 216 9.3E-74 T 11-10-2018 AMK58_22615 43cdf57348c60b8d4283fafb5b063ef6 4224 Gene3D G3DSA:2.60.40.2700 1942 2034 1.1E-18 T 11-10-2018 AMK58_22615 43cdf57348c60b8d4283fafb5b063ef6 4224 Gene3D G3DSA:2.60.40.2700 2644 2734 1.7E-17 T 11-10-2018 AMK58_22615 43cdf57348c60b8d4283fafb5b063ef6 4224 Gene3D G3DSA:2.60.40.2700 2042 2134 8.2E-18 T 11-10-2018 AMK58_22615 43cdf57348c60b8d4283fafb5b063ef6 4224 Gene3D G3DSA:2.60.40.2700 2142 2234 8.2E-18 T 11-10-2018 AMK58_22615 43cdf57348c60b8d4283fafb5b063ef6 4224 Gene3D G3DSA:2.60.40.2700 1842 1934 1.1E-18 T 11-10-2018 AMK58_22615 43cdf57348c60b8d4283fafb5b063ef6 4224 Gene3D G3DSA:2.60.40.2700 2244 2334 1.2E-17 T 11-10-2018 AMK58_22615 43cdf57348c60b8d4283fafb5b063ef6 4224 Gene3D G3DSA:2.60.40.2700 2442 2534 1.1E-18 T 11-10-2018 AMK58_22615 43cdf57348c60b8d4283fafb5b063ef6 4224 Gene3D G3DSA:2.60.40.2700 1742 1834 2.4E-18 T 11-10-2018 AMK58_22615 43cdf57348c60b8d4283fafb5b063ef6 4224 Gene3D G3DSA:2.60.40.2700 2542 2634 8.2E-18 T 11-10-2018 AMK58_22615 43cdf57348c60b8d4283fafb5b063ef6 4224 Gene3D G3DSA:2.60.40.2700 1539 1635 2.6E-18 T 11-10-2018 AMK58_22615 43cdf57348c60b8d4283fafb5b063ef6 4224 Gene3D G3DSA:2.60.40.2700 2742 2834 5.6E-18 T 11-10-2018 AMK58_22615 43cdf57348c60b8d4283fafb5b063ef6 4224 Gene3D G3DSA:2.60.40.2700 2342 2434 1.1E-18 T 11-10-2018 AMK58_22615 43cdf57348c60b8d4283fafb5b063ef6 4224 Gene3D G3DSA:2.60.40.2700 1644 1734 1.2E-17 T 11-10-2018 AMK58_22615 43cdf57348c60b8d4283fafb5b063ef6 4224 SMART SM00112 934 1013 6.7E-5 T 11-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 AMK58_22615 43cdf57348c60b8d4283fafb5b063ef6 4224 Gene3D G3DSA:2.60.40.10 3770 3846 5.4E-11 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_22615 43cdf57348c60b8d4283fafb5b063ef6 4224 Gene3D G3DSA:2.60.40.60 913 1017 6.1E-12 T 11-10-2018 AMK58_22615 43cdf57348c60b8d4283fafb5b063ef6 4224 Pfam PF14252 Domain of unknown function (DUF4347) 116 277 2.8E-49 T 11-10-2018 IPR025592 Domain of unknown function DUF4347 AMK58_22615 43cdf57348c60b8d4283fafb5b063ef6 4224 Gene3D G3DSA:2.60.40.10 3348 3446 8.4E-22 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_22615 43cdf57348c60b8d4283fafb5b063ef6 4224 Gene3D G3DSA:2.60.40.10 3249 3346 5.7E-22 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_22615 43cdf57348c60b8d4283fafb5b063ef6 4224 SMART SM00710 500 537 29.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_22615 43cdf57348c60b8d4283fafb5b063ef6 4224 SMART SM00710 406 428 1200.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_22615 43cdf57348c60b8d4283fafb5b063ef6 4224 SMART SM00710 543 567 2400.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_22615 43cdf57348c60b8d4283fafb5b063ef6 4224 SMART SM00710 273 294 10000.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_22615 43cdf57348c60b8d4283fafb5b063ef6 4224 SMART SM00710 464 486 5800.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_22615 43cdf57348c60b8d4283fafb5b063ef6 4224 SMART SM00710 865 885 9500.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_22615 43cdf57348c60b8d4283fafb5b063ef6 4224 Gene3D G3DSA:2.60.40.10 3147 3248 1.7E-8 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_22615 43cdf57348c60b8d4283fafb5b063ef6 4224 Gene3D G3DSA:2.60.40.10 3671 3769 7.3E-18 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_22615 43cdf57348c60b8d4283fafb5b063ef6 4224 Gene3D G3DSA:2.60.40.10 3571 3670 9.3E-18 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_22615 43cdf57348c60b8d4283fafb5b063ef6 4224 SUPERFAMILY SSF51126 276 652 6.28E-13 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor AMK58_22615 43cdf57348c60b8d4283fafb5b063ef6 4224 SUPERFAMILY SSF49313 912 1013 9.26E-11 T 11-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 AMK58_07035 7b8ff54c145a83d1008dd8f23485a897 220 SUPERFAMILY SSF46894 143 215 6.8E-22 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMK58_07035 7b8ff54c145a83d1008dd8f23485a897 220 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 169 7.7E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_07035 7b8ff54c145a83d1008dd8f23485a897 220 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 169 185 7.7E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_07035 7b8ff54c145a83d1008dd8f23485a897 220 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 185 197 7.7E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_07035 7b8ff54c145a83d1008dd8f23485a897 220 Gene3D G3DSA:3.40.50.12740 5 215 1.9E-40 T 11-10-2018 AMK58_07035 7b8ff54c145a83d1008dd8f23485a897 220 SMART SM00448 4 116 0.0024 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_07035 7b8ff54c145a83d1008dd8f23485a897 220 ProSitePatterns PS00622 LuxR-type HTH domain signature. 169 196 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_07035 7b8ff54c145a83d1008dd8f23485a897 220 SMART SM00421 152 209 2.7E-24 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_07035 7b8ff54c145a83d1008dd8f23485a897 220 Pfam PF00196 Bacterial regulatory proteins, luxR family 154 209 5.3E-22 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_07035 7b8ff54c145a83d1008dd8f23485a897 220 SUPERFAMILY SSF52172 1 121 2.42E-11 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_10870 aa31e083e76283ea7d07dd5b97794d54 436 Gene3D G3DSA:2.160.20.80 255 349 6.2E-24 T 11-10-2018 AMK58_10870 aa31e083e76283ea7d07dd5b97794d54 436 Gene3D G3DSA:2.160.20.80 353 418 6.0E-13 T 11-10-2018 AMK58_10870 aa31e083e76283ea7d07dd5b97794d54 436 SUPERFAMILY SSF141571 131 232 4.32E-27 T 11-10-2018 AMK58_10870 aa31e083e76283ea7d07dd5b97794d54 436 SUPERFAMILY SSF141571 33 111 2.09E-19 T 11-10-2018 AMK58_10870 aa31e083e76283ea7d07dd5b97794d54 436 Gene3D G3DSA:2.160.20.80 25 116 1.7E-19 T 11-10-2018 AMK58_10870 aa31e083e76283ea7d07dd5b97794d54 436 Gene3D G3DSA:2.160.20.80 127 248 3.8E-29 T 11-10-2018 AMK58_10870 aa31e083e76283ea7d07dd5b97794d54 436 Pfam PF00805 Pentapeptide repeats (8 copies) 131 156 5.7E-5 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_10870 aa31e083e76283ea7d07dd5b97794d54 436 Pfam PF00805 Pentapeptide repeats (8 copies) 33 65 0.0057 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_10870 aa31e083e76283ea7d07dd5b97794d54 436 Pfam PF00805 Pentapeptide repeats (8 copies) 310 348 8.1E-11 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_10870 aa31e083e76283ea7d07dd5b97794d54 436 Pfam PF00805 Pentapeptide repeats (8 copies) 201 231 1.7E-6 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_10870 aa31e083e76283ea7d07dd5b97794d54 436 Pfam PF00805 Pentapeptide repeats (8 copies) 361 400 1.0E-10 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_10870 aa31e083e76283ea7d07dd5b97794d54 436 Pfam PF00805 Pentapeptide repeats (8 copies) 162 200 5.7E-10 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_10870 aa31e083e76283ea7d07dd5b97794d54 436 Pfam PF00805 Pentapeptide repeats (8 copies) 271 309 6.3E-8 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_10870 aa31e083e76283ea7d07dd5b97794d54 436 Pfam PF00805 Pentapeptide repeats (8 copies) 68 107 2.6E-12 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_10870 aa31e083e76283ea7d07dd5b97794d54 436 SUPERFAMILY SSF141571 264 417 9.81E-33 T 11-10-2018 AMK58_24475 9a862cb68fe1be24f4476ee8035e48f2 431 Gene3D G3DSA:3.50.50.100 1 415 2.7E-142 T 11-10-2018 AMK58_24475 9a862cb68fe1be24f4476ee8035e48f2 431 SUPERFAMILY SSF51905 2 254 2.68E-7 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_24475 9a862cb68fe1be24f4476ee8035e48f2 431 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 308 1.0E-12 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMK58_24475 9a862cb68fe1be24f4476ee8035e48f2 431 SUPERFAMILY SSF51905 3 340 2.42E-21 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_06115 b63ba30075705ccf2b6307277c38a19a 180 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 22 173 41.069 T 11-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06115 b63ba30075705ccf2b6307277c38a19a 180 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 140 156 - T 11-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06115 b63ba30075705ccf2b6307277c38a19a 180 Gene3D G3DSA:3.40.50.12280 17 180 1.2E-78 T 11-10-2018 AMK58_06115 b63ba30075705ccf2b6307277c38a19a 180 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 60 168 7.9E-22 T 11-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06115 b63ba30075705ccf2b6307277c38a19a 180 SUPERFAMILY SSF56770 31 176 3.27E-66 T 11-10-2018 AMK58_06115 b63ba30075705ccf2b6307277c38a19a 180 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 33 174 7.3E-76 T 11-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_25105 8f16dd8d11ca0053aebc5cb708b79642 464 Pfam PF00437 Type II/IV secretion system protein 114 390 7.7E-81 T 11-10-2018 IPR001482 Type II/IV secretion system protein AMK58_25105 8f16dd8d11ca0053aebc5cb708b79642 464 Gene3D G3DSA:3.40.50.300 212 444 8.5E-71 T 11-10-2018 AMK58_25105 8f16dd8d11ca0053aebc5cb708b79642 464 SUPERFAMILY SSF52540 97 424 9.22E-65 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_25105 8f16dd8d11ca0053aebc5cb708b79642 464 Gene3D G3DSA:3.30.450.380 40 209 4.3E-39 T 11-10-2018 AMK58_08175 1193e2e8f4cba0c3b7ef8f60282977e7 624 Gene3D G3DSA:2.40.30.10 222 308 5.2E-20 T 11-10-2018 AMK58_08175 1193e2e8f4cba0c3b7ef8f60282977e7 624 Gene3D G3DSA:2.40.30.10 311 414 2.0E-22 T 11-10-2018 AMK58_08175 1193e2e8f4cba0c3b7ef8f60282977e7 624 SUPERFAMILY SSF52540 9 234 4.27E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_08175 1193e2e8f4cba0c3b7ef8f60282977e7 624 Pfam PF01583 Adenylylsulphate kinase 445 595 1.5E-63 T 11-10-2018 AMK58_08175 1193e2e8f4cba0c3b7ef8f60282977e7 624 SUPERFAMILY SSF50465 313 412 4.27E-18 T 11-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal AMK58_08175 1193e2e8f4cba0c3b7ef8f60282977e7 624 Gene3D G3DSA:3.40.50.300 421 614 2.3E-71 T 11-10-2018 AMK58_08175 1193e2e8f4cba0c3b7ef8f60282977e7 624 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 63 78 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site AMK58_08175 1193e2e8f4cba0c3b7ef8f60282977e7 624 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 11 403 2.7E-107 T 11-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 AMK58_08175 1193e2e8f4cba0c3b7ef8f60282977e7 624 Pfam PF00009 Elongation factor Tu GTP binding domain 12 206 5.3E-44 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_08175 1193e2e8f4cba0c3b7ef8f60282977e7 624 PRINTS PR00315 GTP-binding elongation factor signature 12 25 1.9E-18 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_08175 1193e2e8f4cba0c3b7ef8f60282977e7 624 PRINTS PR00315 GTP-binding elongation factor signature 90 100 1.9E-18 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_08175 1193e2e8f4cba0c3b7ef8f60282977e7 624 PRINTS PR00315 GTP-binding elongation factor signature 106 117 1.9E-18 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_08175 1193e2e8f4cba0c3b7ef8f60282977e7 624 PRINTS PR00315 GTP-binding elongation factor signature 70 78 1.9E-18 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_08175 1193e2e8f4cba0c3b7ef8f60282977e7 624 PRINTS PR00315 GTP-binding elongation factor signature 143 152 1.9E-18 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_08175 1193e2e8f4cba0c3b7ef8f60282977e7 624 SUPERFAMILY SSF52540 442 611 1.89E-33 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_08175 1193e2e8f4cba0c3b7ef8f60282977e7 624 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 443 614 35.853 T 11-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 AMK58_08175 1193e2e8f4cba0c3b7ef8f60282977e7 624 SUPERFAMILY SSF50447 219 307 6.03E-16 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMK58_08175 1193e2e8f4cba0c3b7ef8f60282977e7 624 Gene3D G3DSA:3.40.50.300 2 217 9.4E-69 T 11-10-2018 AMK58_08175 1193e2e8f4cba0c3b7ef8f60282977e7 624 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 431 608 5.2E-69 T 11-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 AMK58_06350 b82e6ecead6f3ab95aa8ec871dd0c5e7 437 Pfam PF00285 Citrate synthase, C-terminal domain 53 419 7.4E-134 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 AMK58_06350 b82e6ecead6f3ab95aa8ec871dd0c5e7 437 Gene3D G3DSA:2.20.28.60 2 57 3.1E-21 T 11-10-2018 AMK58_06350 b82e6ecead6f3ab95aa8ec871dd0c5e7 437 Gene3D G3DSA:1.10.230.10 275 384 1.0E-146 T 11-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain AMK58_06350 b82e6ecead6f3ab95aa8ec871dd0c5e7 437 PIRSF PIRSF001369 44 437 1.6E-169 T 11-10-2018 IPR024176 Citrate synthase, bacterial-type AMK58_06350 b82e6ecead6f3ab95aa8ec871dd0c5e7 437 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 20 430 6.3E-237 T 11-10-2018 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 AMK58_06350 b82e6ecead6f3ab95aa8ec871dd0c5e7 437 ProSitePatterns PS00480 Citrate synthase signature. 310 322 - T 11-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 AMK58_06350 b82e6ecead6f3ab95aa8ec871dd0c5e7 437 PRINTS PR00143 Citrate synthase signature 226 241 1.3E-56 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 AMK58_06350 b82e6ecead6f3ab95aa8ec871dd0c5e7 437 PRINTS PR00143 Citrate synthase signature 367 383 1.3E-56 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 AMK58_06350 b82e6ecead6f3ab95aa8ec871dd0c5e7 437 PRINTS PR00143 Citrate synthase signature 387 401 1.3E-56 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 AMK58_06350 b82e6ecead6f3ab95aa8ec871dd0c5e7 437 PRINTS PR00143 Citrate synthase signature 172 185 1.3E-56 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 AMK58_06350 b82e6ecead6f3ab95aa8ec871dd0c5e7 437 PRINTS PR00143 Citrate synthase signature 303 323 1.3E-56 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 AMK58_06350 b82e6ecead6f3ab95aa8ec871dd0c5e7 437 PRINTS PR00143 Citrate synthase signature 248 276 1.3E-56 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 AMK58_06350 b82e6ecead6f3ab95aa8ec871dd0c5e7 437 SUPERFAMILY SSF48256 12 436 5.63E-168 T 11-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 AMK58_06350 b82e6ecead6f3ab95aa8ec871dd0c5e7 437 Gene3D G3DSA:1.10.580.10 64 419 1.0E-146 T 11-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 AMK58_20150 5526ec1b9ff6221fd69a825de04bdb0a 137 SUPERFAMILY SSF46955 1 111 1.98E-28 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily AMK58_20150 5526ec1b9ff6221fd69a825de04bdb0a 137 Pfam PF00376 MerR family regulatory protein 2 39 9.9E-15 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMK58_20150 5526ec1b9ff6221fd69a825de04bdb0a 137 SMART SM00422 1 70 3.2E-18 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMK58_20150 5526ec1b9ff6221fd69a825de04bdb0a 137 Pfam PF09278 MerR, DNA binding 45 101 7.7E-7 T 11-10-2018 IPR015358 Transcription regulator MerR, DNA binding AMK58_20150 5526ec1b9ff6221fd69a825de04bdb0a 137 ProSitePatterns PS00552 MerR-type HTH domain signature. 4 26 - T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMK58_20150 5526ec1b9ff6221fd69a825de04bdb0a 137 Gene3D G3DSA:1.10.1660.10 1 130 1.6E-30 T 11-10-2018 AMK58_20150 5526ec1b9ff6221fd69a825de04bdb0a 137 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 3.8E-7 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMK58_20150 5526ec1b9ff6221fd69a825de04bdb0a 137 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 3.8E-7 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMK58_20150 5526ec1b9ff6221fd69a825de04bdb0a 137 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 3.8E-7 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMK58_14380 503dc857b9bc1505ed5636849fd8c2af 135 Pfam PF07681 DoxX 16 94 1.9E-13 T 11-10-2018 IPR032808 DoxX family AMK58_18480 59ed8fa9f0d1e6a8fc90f90313d244a0 472 Gene3D G3DSA:2.40.33.10 73 169 1.1E-167 T 11-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_18480 59ed8fa9f0d1e6a8fc90f90313d244a0 472 SUPERFAMILY SSF52935 320 470 7.72E-40 T 11-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_18480 59ed8fa9f0d1e6a8fc90f90313d244a0 472 PRINTS PR01050 Pyruvate kinase family signature 291 309 1.7E-63 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_18480 59ed8fa9f0d1e6a8fc90f90313d244a0 472 PRINTS PR01050 Pyruvate kinase family signature 310 326 1.7E-63 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_18480 59ed8fa9f0d1e6a8fc90f90313d244a0 472 PRINTS PR01050 Pyruvate kinase family signature 62 78 1.7E-63 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_18480 59ed8fa9f0d1e6a8fc90f90313d244a0 472 PRINTS PR01050 Pyruvate kinase family signature 214 240 1.7E-63 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_18480 59ed8fa9f0d1e6a8fc90f90313d244a0 472 PRINTS PR01050 Pyruvate kinase family signature 266 290 1.7E-63 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_18480 59ed8fa9f0d1e6a8fc90f90313d244a0 472 PRINTS PR01050 Pyruvate kinase family signature 241 265 1.7E-63 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_18480 59ed8fa9f0d1e6a8fc90f90313d244a0 472 PRINTS PR01050 Pyruvate kinase family signature 187 201 1.7E-63 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_18480 59ed8fa9f0d1e6a8fc90f90313d244a0 472 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 5 470 2.3E-152 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_18480 59ed8fa9f0d1e6a8fc90f90313d244a0 472 Pfam PF02887 Pyruvate kinase, alpha/beta domain 355 468 8.1E-31 T 11-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_18480 59ed8fa9f0d1e6a8fc90f90313d244a0 472 Gene3D G3DSA:3.20.20.60 5 332 1.1E-167 T 11-10-2018 AMK58_18480 59ed8fa9f0d1e6a8fc90f90313d244a0 472 SUPERFAMILY SSF50800 73 168 4.19E-23 T 11-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily AMK58_18480 59ed8fa9f0d1e6a8fc90f90313d244a0 472 Pfam PF00224 Pyruvate kinase, barrel domain 5 335 2.3E-111 T 11-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_18480 59ed8fa9f0d1e6a8fc90f90313d244a0 472 SUPERFAMILY SSF51621 2 340 1.36E-93 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMK58_18480 59ed8fa9f0d1e6a8fc90f90313d244a0 472 Gene3D G3DSA:3.40.1380.20 333 466 1.1E-167 T 11-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_13680 2944f3549f4a488c4b65b4e33eabaf97 178 SUPERFAMILY SSF55144 2 177 9.07E-48 T 11-10-2018 IPR009097 Cyclic phosphodiesterase AMK58_13680 2944f3549f4a488c4b65b4e33eabaf97 178 Gene3D G3DSA:3.90.1140.10 2 178 3.1E-50 T 11-10-2018 AMK58_13680 2944f3549f4a488c4b65b4e33eabaf97 178 Pfam PF02834 LigT like Phosphoesterase 9 86 3.8E-17 T 11-10-2018 IPR014051 Phosphoesterase, HXTX AMK58_13680 2944f3549f4a488c4b65b4e33eabaf97 178 Pfam PF02834 LigT like Phosphoesterase 92 167 8.2E-14 T 11-10-2018 IPR014051 Phosphoesterase, HXTX AMK58_13680 2944f3549f4a488c4b65b4e33eabaf97 178 Hamap MF_01940 RNA 2',3'-cyclic phosphodiesterase [thpR]. 2 177 27.429 T 11-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 AMK58_13680 2944f3549f4a488c4b65b4e33eabaf97 178 TIGRFAM TIGR02258 2_5_ligase: 2'-5' RNA ligase 2 175 8.7E-52 T 11-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 AMK58_21930 8a2c265a76e7b02c05fc55b80cd36190 316 Gene3D G3DSA:3.40.50.720 1 189 7.1E-50 T 11-10-2018 AMK58_21930 8a2c265a76e7b02c05fc55b80cd36190 316 SUPERFAMILY SSF48179 192 312 1.16E-12 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMK58_21930 8a2c265a76e7b02c05fc55b80cd36190 316 Gene3D G3DSA:1.10.1040.10 192 316 9.7E-19 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMK58_21930 8a2c265a76e7b02c05fc55b80cd36190 316 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 192 312 1.5E-12 T 11-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain AMK58_21930 8a2c265a76e7b02c05fc55b80cd36190 316 SUPERFAMILY SSF51735 1 152 1.79E-15 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_21930 8a2c265a76e7b02c05fc55b80cd36190 316 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 167 4.6E-21 T 11-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain AMK58_19335 ee8c86cf4042d81beaf091739c7e65b2 482 SMART SM00245 221 412 7.0E-59 T 11-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 AMK58_19335 ee8c86cf4042d81beaf091739c7e65b2 482 SMART SM00228 139 212 1.2E-14 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMK58_19335 ee8c86cf4042d81beaf091739c7e65b2 482 Gene3D G3DSA:3.90.226.10 236 409 3.5E-89 T 11-10-2018 AMK58_19335 ee8c86cf4042d81beaf091739c7e65b2 482 Pfam PF13180 PDZ domain 139 212 1.3E-11 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMK58_19335 ee8c86cf4042d81beaf091739c7e65b2 482 SUPERFAMILY SSF52096 91 416 2.65E-65 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMK58_19335 ee8c86cf4042d81beaf091739c7e65b2 482 Pfam PF03572 Peptidase family S41 245 410 4.6E-45 T 11-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 AMK58_19335 ee8c86cf4042d81beaf091739c7e65b2 482 Gene3D G3DSA:2.30.42.10 139 235 3.5E-89 T 11-10-2018 AMK58_19335 ee8c86cf4042d81beaf091739c7e65b2 482 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 98 420 1.2E-86 T 11-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 AMK58_19335 ee8c86cf4042d81beaf091739c7e65b2 482 SUPERFAMILY SSF50156 110 236 9.85E-22 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 AMK58_19335 ee8c86cf4042d81beaf091739c7e65b2 482 Gene3D G3DSA:3.30.750.44 96 387 3.5E-89 T 11-10-2018 AMK58_20645 131cdd6422b01d41a8c7883ba8c1d473 355 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 38 350 4.1E-151 T 11-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 AMK58_20645 131cdd6422b01d41a8c7883ba8c1d473 355 Pfam PF13531 Bacterial extracellular solute-binding protein 65 304 1.1E-46 T 11-10-2018 AMK58_20645 131cdd6422b01d41a8c7883ba8c1d473 355 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 169 177 - T 11-10-2018 IPR034408 Sulphate/thiosulphate-binding site GO:1901681 AMK58_20645 131cdd6422b01d41a8c7883ba8c1d473 355 Gene3D G3DSA:3.40.190.10 51 319 7.0E-137 T 11-10-2018 AMK58_20645 131cdd6422b01d41a8c7883ba8c1d473 355 Gene3D G3DSA:3.40.190.10 138 349 7.0E-137 T 11-10-2018 AMK58_20645 131cdd6422b01d41a8c7883ba8c1d473 355 SUPERFAMILY SSF53850 45 352 5.93E-93 T 11-10-2018 AMK58_28885 12c835a456ce054fcbaea3206b55abcd 201 Pfam PF08241 Methyltransferase domain 27 92 1.7E-10 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 AMK58_28885 12c835a456ce054fcbaea3206b55abcd 201 SUPERFAMILY SSF53335 4 175 7.21E-20 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_06470 ee340ce3e8e0d7078da4bdef3b90e4eb 258 TIGRFAM TIGR02111 PQQ_syn_pqqC: coenzyme PQQ biosynthesis protein C 5 249 1.5E-109 T 11-10-2018 IPR011845 Coenzyme PQQ biosynthesis protein C GO:0018189|GO:0055114 MetaCyc: PWY-6420 AMK58_06470 ee340ce3e8e0d7078da4bdef3b90e4eb 258 SUPERFAMILY SSF48613 2 251 1.8E-63 T 11-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 AMK58_06470 ee340ce3e8e0d7078da4bdef3b90e4eb 258 Gene3D G3DSA:1.20.910.10 1 238 5.6E-58 T 11-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 AMK58_06470 ee340ce3e8e0d7078da4bdef3b90e4eb 258 Pfam PF03070 TENA/THI-4/PQQC family 12 229 1.3E-49 T 11-10-2018 IPR004305 Thiaminase-2/PQQC AMK58_06470 ee340ce3e8e0d7078da4bdef3b90e4eb 258 Hamap MF_00654 Pyrroloquinoline-quinone synthase [pqqC]. 1 258 118.21 T 11-10-2018 IPR011845 Coenzyme PQQ biosynthesis protein C GO:0018189|GO:0055114 MetaCyc: PWY-6420 AMK58_19915 a629cac69227d76e2fbb1ff924f4a382 315 Gene3D G3DSA:3.40.50.720 5 299 3.4E-87 T 11-10-2018 AMK58_19915 a629cac69227d76e2fbb1ff924f4a382 315 SUPERFAMILY SSF51735 3 309 1.85E-82 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_19915 a629cac69227d76e2fbb1ff924f4a382 315 Pfam PF01370 NAD dependent epimerase/dehydratase family 5 231 3.5E-54 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMK58_19915 a629cac69227d76e2fbb1ff924f4a382 315 Gene3D G3DSA:3.90.25.10 171 308 3.4E-87 T 11-10-2018 AMK58_14950 a2f2211189cff38a5de899f5f8f6867d 357 Gene3D G3DSA:3.40.50.300 8 243 3.5E-57 T 11-10-2018 AMK58_14950 a2f2211189cff38a5de899f5f8f6867d 357 SUPERFAMILY SSF90002 267 356 4.45E-19 T 11-10-2018 AMK58_14950 a2f2211189cff38a5de899f5f8f6867d 357 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 12 207 2.7E-56 T 11-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain AMK58_14950 a2f2211189cff38a5de899f5f8f6867d 357 SMART SM00833 267 356 1.5E-10 T 11-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal AMK58_14950 a2f2211189cff38a5de899f5f8f6867d 357 SUPERFAMILY SSF52540 11 208 1.07E-30 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_14950 a2f2211189cff38a5de899f5f8f6867d 357 TIGRFAM TIGR02475 CobW: cobalamin biosynthesis protein CobW 10 356 5.1E-155 T 11-10-2018 IPR012824 Cobalamin (vitamin B12) biosynthesis CobW GO:0009236 AMK58_14950 a2f2211189cff38a5de899f5f8f6867d 357 Gene3D G3DSA:3.30.1220.10 245 357 1.0E-19 T 11-10-2018 IPR036627 CobW-like, C-terminal domain superfamily AMK58_14950 a2f2211189cff38a5de899f5f8f6867d 357 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 267 356 2.5E-18 T 11-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal AMK58_04450 73f16877019c075ebf1541bd28cc9d25 332 SUPERFAMILY SSF51604 123 332 1.97E-54 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMK58_04450 73f16877019c075ebf1541bd28cc9d25 332 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 8 116 1.5E-9 T 11-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain AMK58_04450 73f16877019c075ebf1541bd28cc9d25 332 Gene3D G3DSA:3.30.390.10 3 108 4.9E-29 T 11-10-2018 IPR029017 Enolase-like, N-terminal AMK58_04450 73f16877019c075ebf1541bd28cc9d25 332 SUPERFAMILY SSF54826 6 116 5.89E-28 T 11-10-2018 AMK58_04450 73f16877019c075ebf1541bd28cc9d25 332 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 177 208 - T 11-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 AMK58_04450 73f16877019c075ebf1541bd28cc9d25 332 Gene3D G3DSA:3.20.20.120 110 332 3.3E-60 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMK58_04450 73f16877019c075ebf1541bd28cc9d25 332 Pfam PF13378 Enolase C-terminal domain-like 138 297 1.7E-28 T 11-10-2018 IPR029065 Enolase C-terminal domain-like AMK58_04450 73f16877019c075ebf1541bd28cc9d25 332 SMART SM00922 135 227 1.7E-19 T 11-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AMK58_19095 c43e307c9044ad1f5f28ac8926df7088 99 SUPERFAMILY SSF51182 7 93 8.65E-15 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily AMK58_19095 c43e307c9044ad1f5f28ac8926df7088 99 Pfam PF07883 Cupin domain 23 93 3.7E-9 T 11-10-2018 IPR013096 Cupin 2, conserved barrel AMK58_19095 c43e307c9044ad1f5f28ac8926df7088 99 Gene3D G3DSA:2.60.120.10 4 97 4.0E-26 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_14045 e29055aaee67e0a97b7f20704c4d51ea 560 Gene3D G3DSA:1.20.1560.10 12 320 2.1E-29 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMK58_14045 e29055aaee67e0a97b7f20704c4d51ea 560 Pfam PF00664 ABC transporter transmembrane region 125 282 2.2E-8 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMK58_14045 e29055aaee67e0a97b7f20704c4d51ea 560 Pfam PF00005 ABC transporter 350 498 9.3E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_14045 e29055aaee67e0a97b7f20704c4d51ea 560 Gene3D G3DSA:3.40.50.300 327 554 4.3E-63 T 11-10-2018 AMK58_14045 e29055aaee67e0a97b7f20704c4d51ea 560 SUPERFAMILY SSF90123 14 313 1.7E-28 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMK58_14045 e29055aaee67e0a97b7f20704c4d51ea 560 SMART SM00382 359 546 1.1E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_14045 e29055aaee67e0a97b7f20704c4d51ea 560 SUPERFAMILY SSF52540 328 544 5.88E-53 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_15580 2cda638a7f0674ac8427d85e02e759ee 537 SUPERFAMILY SSF51905 29 536 4.86E-77 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_15580 2cda638a7f0674ac8427d85e02e759ee 537 Pfam PF00732 GMC oxidoreductase 31 325 1.8E-69 T 11-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 AMK58_15580 2cda638a7f0674ac8427d85e02e759ee 537 Gene3D G3DSA:3.30.410.40 178 474 2.3E-167 T 11-10-2018 AMK58_15580 2cda638a7f0674ac8427d85e02e759ee 537 Gene3D G3DSA:1.10.1220.110 122 177 2.3E-167 T 11-10-2018 AMK58_15580 2cda638a7f0674ac8427d85e02e759ee 537 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 284 298 - T 11-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 AMK58_15580 2cda638a7f0674ac8427d85e02e759ee 537 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 107 130 - T 11-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 AMK58_15580 2cda638a7f0674ac8427d85e02e759ee 537 Pfam PF05199 GMC oxidoreductase 394 527 4.4E-36 T 11-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 AMK58_15580 2cda638a7f0674ac8427d85e02e759ee 537 Gene3D G3DSA:3.50.50.60 31 530 2.3E-167 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_15580 2cda638a7f0674ac8427d85e02e759ee 537 Gene3D G3DSA:4.10.450.10 64 226 2.3E-167 T 11-10-2018 IPR027424 Glucose Oxidase, domain 2 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|Reactome: R-HSA-6798163 AMK58_15580 2cda638a7f0674ac8427d85e02e759ee 537 SUPERFAMILY SSF54373 321 477 6.97E-36 T 11-10-2018 AMK58_15580 2cda638a7f0674ac8427d85e02e759ee 537 PIRSF PIRSF000137 342 537 5.1E-44 T 11-10-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 AMK58_15580 2cda638a7f0674ac8427d85e02e759ee 537 PIRSF PIRSF000137 13 356 2.6E-100 T 11-10-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 AMK58_28340 ebf0906d7661f35de3c45d7ece82e686 277 PIRSF PIRSF003073 5 259 3.5E-95 T 11-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein AMK58_28340 ebf0906d7661f35de3c45d7ece82e686 277 Gene3D G3DSA:3.40.50.300 67 254 1.8E-42 T 11-10-2018 AMK58_28340 ebf0906d7661f35de3c45d7ece82e686 277 SMART SM00382 105 237 7.3E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_28340 ebf0906d7661f35de3c45d7ece82e686 277 SUPERFAMILY SSF52540 70 236 2.61E-24 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_28340 ebf0906d7661f35de3c45d7ece82e686 277 Pfam PF01695 IstB-like ATP binding protein 60 236 5.4E-64 T 11-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 AMK58_23445 f3571282c7fb7eb56c0e2752a309be03 307 SUPERFAMILY SSF52540 20 168 1.5E-11 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_23445 f3571282c7fb7eb56c0e2752a309be03 307 Gene3D G3DSA:3.40.50.300 45 172 4.8E-7 T 11-10-2018 AMK58_23445 f3571282c7fb7eb56c0e2752a309be03 307 Pfam PF03668 P-loop ATPase protein family 21 302 1.1E-88 T 11-10-2018 IPR005337 RapZ-like family GO:0005524 AMK58_23445 f3571282c7fb7eb56c0e2752a309be03 307 PIRSF PIRSF005052 20 304 2.7E-96 T 11-10-2018 IPR005337 RapZ-like family GO:0005524 AMK58_23445 f3571282c7fb7eb56c0e2752a309be03 307 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 20 301 39.938 T 11-10-2018 IPR005337 RapZ-like family GO:0005524 AMK58_11345 12ac538af93d397092939b59b6d07a07 158 TIGRFAM TIGR00754 bfr: bacterioferritin 2 155 1.7E-71 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMK58_11345 12ac538af93d397092939b59b6d07a07 158 PRINTS PR00601 Bacterioferritin signature 107 127 2.2E-65 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMK58_11345 12ac538af93d397092939b59b6d07a07 158 PRINTS PR00601 Bacterioferritin signature 3 22 2.2E-65 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMK58_11345 12ac538af93d397092939b59b6d07a07 158 PRINTS PR00601 Bacterioferritin signature 128 149 2.2E-65 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMK58_11345 12ac538af93d397092939b59b6d07a07 158 PRINTS PR00601 Bacterioferritin signature 65 85 2.2E-65 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMK58_11345 12ac538af93d397092939b59b6d07a07 158 PRINTS PR00601 Bacterioferritin signature 86 106 2.2E-65 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMK58_11345 12ac538af93d397092939b59b6d07a07 158 PRINTS PR00601 Bacterioferritin signature 23 43 2.2E-65 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMK58_11345 12ac538af93d397092939b59b6d07a07 158 PRINTS PR00601 Bacterioferritin signature 44 64 2.2E-65 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMK58_11345 12ac538af93d397092939b59b6d07a07 158 Pfam PF00210 Ferritin-like domain 9 144 4.2E-39 T 11-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 AMK58_11345 12ac538af93d397092939b59b6d07a07 158 PIRSF PIRSF002560 1 157 2.4E-68 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMK58_11345 12ac538af93d397092939b59b6d07a07 158 SUPERFAMILY SSF47240 2 153 2.71E-50 T 11-10-2018 IPR009078 Ferritin-like superfamily AMK58_11345 12ac538af93d397092939b59b6d07a07 158 Gene3D G3DSA:1.20.1260.10 1 158 2.3E-66 T 11-10-2018 IPR012347 Ferritin-like AMK58_15625 7d661679b38adae3205efe2c9d20f2f0 282 PRINTS PR00111 Alpha/beta hydrolase fold signature 60 75 1.0E-4 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_15625 7d661679b38adae3205efe2c9d20f2f0 282 PRINTS PR00111 Alpha/beta hydrolase fold signature 225 239 1.0E-4 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_15625 7d661679b38adae3205efe2c9d20f2f0 282 PRINTS PR00111 Alpha/beta hydrolase fold signature 104 117 1.0E-4 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_15625 7d661679b38adae3205efe2c9d20f2f0 282 Gene3D G3DSA:3.40.50.1820 16 282 6.7E-68 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_15625 7d661679b38adae3205efe2c9d20f2f0 282 Pfam PF00561 alpha/beta hydrolase fold 34 267 4.2E-23 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_15625 7d661679b38adae3205efe2c9d20f2f0 282 SUPERFAMILY SSF53474 10 281 1.37E-59 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_10910 742c907a2820fcc92bbd480e106a2ff2 169 Gene3D G3DSA:2.30.30.240 55 145 3.8E-16 T 11-10-2018 AMK58_10910 742c907a2820fcc92bbd480e106a2ff2 169 SUPERFAMILY SSF50346 64 155 1.81E-12 T 11-10-2018 IPR011033 PRC-barrel-like superfamily AMK58_10910 742c907a2820fcc92bbd480e106a2ff2 169 Pfam PF05239 PRC-barrel domain 73 128 1.2E-9 T 11-10-2018 IPR027275 PRC-barrel domain AMK58_23690 1d63792156665675097f83954705839d 584 PIRSF PIRSF035859 1 577 0.0 T 11-10-2018 IPR014597 ABC transporter, periplasmic substrate-binding protein, predicted GO:0005215 AMK58_23690 1d63792156665675097f83954705839d 584 SUPERFAMILY SSF53850 64 512 1.02E-54 T 11-10-2018 AMK58_23690 1d63792156665675097f83954705839d 584 Gene3D G3DSA:3.40.190.10 81 460 2.0E-40 T 11-10-2018 AMK58_23690 1d63792156665675097f83954705839d 584 Gene3D G3DSA:3.40.190.10 184 503 2.0E-40 T 11-10-2018 AMK58_02450 3f46a43c8b34ee836a2eba3f8ad138d9 190 TIGRFAM TIGR00997 ispZ: intracellular septation protein A 7 179 1.8E-50 T 11-10-2018 IPR006008 Intracellular septation protein A GO:0016021 AMK58_02450 3f46a43c8b34ee836a2eba3f8ad138d9 190 Pfam PF04279 Intracellular septation protein A 6 176 4.2E-55 T 11-10-2018 IPR006008 Intracellular septation protein A GO:0016021 AMK58_02450 3f46a43c8b34ee836a2eba3f8ad138d9 190 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 5 179 17.723 T 11-10-2018 IPR006008 Intracellular septation protein A GO:0016021 AMK58_28940 54256cf659b920e7aec3e6ecefbacec4 568 Pfam PF08238 Sel1 repeat 118 140 0.23 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_28940 54256cf659b920e7aec3e6ecefbacec4 568 Pfam PF08238 Sel1 repeat 431 465 1.9E-7 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_28940 54256cf659b920e7aec3e6ecefbacec4 568 Pfam PF08238 Sel1 repeat 250 285 4.0E-5 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_28940 54256cf659b920e7aec3e6ecefbacec4 568 Pfam PF08238 Sel1 repeat 358 393 2.2E-9 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_28940 54256cf659b920e7aec3e6ecefbacec4 568 Pfam PF08238 Sel1 repeat 49 84 8.1E-9 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_28940 54256cf659b920e7aec3e6ecefbacec4 568 Pfam PF08238 Sel1 repeat 224 248 1.6E-4 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_28940 54256cf659b920e7aec3e6ecefbacec4 568 Pfam PF08238 Sel1 repeat 178 213 2.9E-5 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_28940 54256cf659b920e7aec3e6ecefbacec4 568 Pfam PF08238 Sel1 repeat 287 321 0.26 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_28940 54256cf659b920e7aec3e6ecefbacec4 568 Pfam PF08238 Sel1 repeat 467 499 1.0E-5 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_28940 54256cf659b920e7aec3e6ecefbacec4 568 Pfam PF08238 Sel1 repeat 395 429 1.4E-8 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_28940 54256cf659b920e7aec3e6ecefbacec4 568 Pfam PF08238 Sel1 repeat 86 112 0.42 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_28940 54256cf659b920e7aec3e6ecefbacec4 568 Pfam PF08238 Sel1 repeat 502 536 5.7E-5 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_28940 54256cf659b920e7aec3e6ecefbacec4 568 Pfam PF08238 Sel1 repeat 144 177 1.8E-9 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_28940 54256cf659b920e7aec3e6ecefbacec4 568 Pfam PF08238 Sel1 repeat 324 357 1.2E-6 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_28940 54256cf659b920e7aec3e6ecefbacec4 568 SMART SM00671 49 84 3.1E-9 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_28940 54256cf659b920e7aec3e6ecefbacec4 568 SMART SM00671 250 285 3.5E-7 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_28940 54256cf659b920e7aec3e6ecefbacec4 568 SMART SM00671 85 141 8.3 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_28940 54256cf659b920e7aec3e6ecefbacec4 568 SMART SM00671 322 357 6.6E-7 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_28940 54256cf659b920e7aec3e6ecefbacec4 568 SMART SM00671 178 213 9.7E-5 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_28940 54256cf659b920e7aec3e6ecefbacec4 568 SMART SM00671 430 465 1.9E-8 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_28940 54256cf659b920e7aec3e6ecefbacec4 568 SMART SM00671 394 429 1.7E-7 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_28940 54256cf659b920e7aec3e6ecefbacec4 568 SMART SM00671 502 536 0.047 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_28940 54256cf659b920e7aec3e6ecefbacec4 568 SMART SM00671 358 393 3.0E-11 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_28940 54256cf659b920e7aec3e6ecefbacec4 568 SMART SM00671 214 249 1.0E-6 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_28940 54256cf659b920e7aec3e6ecefbacec4 568 SMART SM00671 466 501 1.3E-4 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_28940 54256cf659b920e7aec3e6ecefbacec4 568 SMART SM00671 142 177 6.1E-9 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_28940 54256cf659b920e7aec3e6ecefbacec4 568 SMART SM00671 286 321 0.0043 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_28940 54256cf659b920e7aec3e6ecefbacec4 568 Gene3D G3DSA:1.25.40.10 450 546 3.0E-21 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_28940 54256cf659b920e7aec3e6ecefbacec4 568 SUPERFAMILY SSF81901 273 404 6.45E-34 T 11-10-2018 AMK58_28940 54256cf659b920e7aec3e6ecefbacec4 568 SUPERFAMILY SSF81901 22 277 1.05E-53 T 11-10-2018 AMK58_28940 54256cf659b920e7aec3e6ecefbacec4 568 Gene3D G3DSA:1.25.40.10 113 309 5.9E-54 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_28940 54256cf659b920e7aec3e6ecefbacec4 568 SUPERFAMILY SSF81901 377 543 3.79E-43 T 11-10-2018 AMK58_28940 54256cf659b920e7aec3e6ecefbacec4 568 Gene3D G3DSA:1.25.40.10 21 112 8.4E-20 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_28940 54256cf659b920e7aec3e6ecefbacec4 568 Gene3D G3DSA:1.25.40.10 310 430 5.6E-43 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_07850 6a894f9e484bdbdaf9769d90870d6f60 426 Pfam PF01266 FAD dependent oxidoreductase 31 382 1.7E-55 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMK58_07850 6a894f9e484bdbdaf9769d90870d6f60 426 Gene3D G3DSA:3.50.50.60 31 384 1.7E-74 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_07850 6a894f9e484bdbdaf9769d90870d6f60 426 SUPERFAMILY SSF51971 29 391 1.14E-43 T 11-10-2018 AMK58_07850 6a894f9e484bdbdaf9769d90870d6f60 426 Gene3D G3DSA:3.30.9.10 123 345 1.7E-74 T 11-10-2018 AMK58_27865 12c7e7108aea02f5f57d7601c6106761 394 Gene3D G3DSA:3.40.640.10 3 249 3.4E-78 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_27865 12c7e7108aea02f5f57d7601c6106761 394 Gene3D G3DSA:3.90.1150.10 250 384 2.0E-53 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_27865 12c7e7108aea02f5f57d7601c6106761 394 SUPERFAMILY SSF53383 15 382 6.95E-111 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_27865 12c7e7108aea02f5f57d7601c6106761 394 TIGRFAM TIGR02080 O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase 6 383 1.1E-176 T 11-10-2018 IPR011821 O-succinylhomoserine (thiol)-lyase KEGG: 00270+2.5.1.48|KEGG: 00450+2.5.1.48|KEGG: 00920+2.5.1.48|MetaCyc: PWY-801 AMK58_27865 12c7e7108aea02f5f57d7601c6106761 394 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 191 205 - T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMK58_27865 12c7e7108aea02f5f57d7601c6106761 394 PIRSF PIRSF001434 1 384 6.3E-132 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMK58_27865 12c7e7108aea02f5f57d7601c6106761 394 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 9 381 5.8E-132 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMK58_08940 691ba56e5c6ef4363be5a9f14c9c4d9e 603 SMART SM00044 355 569 1.5E-14 T 11-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMK58_08940 691ba56e5c6ef4363be5a9f14c9c4d9e 603 Pfam PF05226 CHASE2 domain 19 290 1.1E-29 T 11-10-2018 IPR007890 CHASE2 AMK58_08940 691ba56e5c6ef4363be5a9f14c9c4d9e 603 SUPERFAMILY SSF55073 389 589 5.02E-52 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_08940 691ba56e5c6ef4363be5a9f14c9c4d9e 603 SMART SM01080 23 294 1.7E-29 T 11-10-2018 IPR007890 CHASE2 AMK58_08940 691ba56e5c6ef4363be5a9f14c9c4d9e 603 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 396 585 2.4E-28 T 11-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMK58_08940 691ba56e5c6ef4363be5a9f14c9c4d9e 603 Gene3D G3DSA:3.30.70.1230 388 597 1.7E-57 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_19125 76ebbc456443518381887df3f2f82831 748 Gene3D G3DSA:3.90.1170.50 37 136 4.6E-65 T 11-10-2018 AMK58_19125 76ebbc456443518381887df3f2f82831 748 Gene3D G3DSA:3.30.365.10 20 283 4.6E-65 T 11-10-2018 AMK58_19125 76ebbc456443518381887df3f2f82831 748 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 165 687 1.1E-109 T 11-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMK58_19125 76ebbc456443518381887df3f2f82831 748 Gene3D G3DSA:3.30.365.10 439 601 5.9E-110 T 11-10-2018 AMK58_19125 76ebbc456443518381887df3f2f82831 748 Gene3D G3DSA:3.30.365.10 366 743 5.9E-110 T 11-10-2018 AMK58_19125 76ebbc456443518381887df3f2f82831 748 SMART SM01008 22 136 4.8E-38 T 11-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMK58_19125 76ebbc456443518381887df3f2f82831 748 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 22 135 5.2E-23 T 11-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMK58_19125 76ebbc456443518381887df3f2f82831 748 SUPERFAMILY SSF56003 159 747 3.27E-159 T 11-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 AMK58_19125 76ebbc456443518381887df3f2f82831 748 Gene3D G3DSA:3.30.365.10 137 341 4.6E-65 T 11-10-2018 AMK58_19125 76ebbc456443518381887df3f2f82831 748 SUPERFAMILY SSF54665 5 144 1.44E-38 T 11-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily AMK58_00625 dde5baa996a53036d78dac384fa7e53d 332 Gene3D G3DSA:3.30.1110.10 16 132 6.1E-89 T 11-10-2018 AMK58_00625 dde5baa996a53036d78dac384fa7e53d 332 Pfam PF00294 pfkB family carbohydrate kinase 58 316 1.1E-47 T 11-10-2018 IPR011611 Carbohydrate kinase PfkB AMK58_00625 dde5baa996a53036d78dac384fa7e53d 332 SUPERFAMILY SSF53613 6 318 2.18E-76 T 11-10-2018 IPR029056 Ribokinase-like AMK58_00625 dde5baa996a53036d78dac384fa7e53d 332 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 273 286 - T 11-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AMK58_00625 dde5baa996a53036d78dac384fa7e53d 332 Gene3D G3DSA:3.40.1190.20 13 314 6.1E-89 T 11-10-2018 IPR029056 Ribokinase-like AMK58_19315 7029976be4b496fc28fe6616e93201ac 755 Pfam PF00708 Acylphosphatase 5 86 9.0E-19 T 11-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AMK58_19315 7029976be4b496fc28fe6616e93201ac 755 TIGRFAM TIGR00143 hypF: carbamoyltransferase HypF 6 736 6.8E-224 T 11-10-2018 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 AMK58_19315 7029976be4b496fc28fe6616e93201ac 755 Pfam PF01300 Telomere recombination 194 383 2.2E-52 T 11-10-2018 IPR006070 YrdC-like domain GO:0003725 AMK58_19315 7029976be4b496fc28fe6616e93201ac 755 Gene3D G3DSA:3.90.870.50 6 361 4.6E-138 T 11-10-2018 AMK58_19315 7029976be4b496fc28fe6616e93201ac 755 Gene3D G3DSA:3.30.420.360 382 736 5.6E-118 T 11-10-2018 AMK58_19315 7029976be4b496fc28fe6616e93201ac 755 PIRSF PIRSF006256 1 744 2.5E-276 T 11-10-2018 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 AMK58_19315 7029976be4b496fc28fe6616e93201ac 755 SUPERFAMILY SSF54975 2 87 1.33E-21 T 11-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AMK58_19315 7029976be4b496fc28fe6616e93201ac 755 SUPERFAMILY SSF55821 171 389 1.59E-49 T 11-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily AMK58_19315 7029976be4b496fc28fe6616e93201ac 755 Gene3D G3DSA:3.30.110.120 237 370 4.6E-138 T 11-10-2018 AMK58_19315 7029976be4b496fc28fe6616e93201ac 755 ProSitePatterns PS00150 Acylphosphatase signature 1. 8 18 - T 11-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AMK58_19315 7029976be4b496fc28fe6616e93201ac 755 Gene3D G3DSA:3.30.420.350 481 724 5.6E-118 T 11-10-2018 AMK58_19315 7029976be4b496fc28fe6616e93201ac 755 Pfam PF07503 HypF finger 104 136 1.5E-16 T 11-10-2018 IPR011125 Zinc finger, HypF-type GO:0008270 AMK58_19315 7029976be4b496fc28fe6616e93201ac 755 Pfam PF07503 HypF finger 154 185 2.2E-16 T 11-10-2018 IPR011125 Zinc finger, HypF-type GO:0008270 AMK58_13750 5b287f6e92abf7cdaac631b8c797ca85 202 Hamap MF_01151 Protein GrpE [grpE]. 2 187 19.522 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AMK58_13750 5b287f6e92abf7cdaac631b8c797ca85 202 ProSitePatterns PS01071 grpE protein signature. 142 185 - T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AMK58_13750 5b287f6e92abf7cdaac631b8c797ca85 202 Gene3D G3DSA:2.30.22.10 131 187 3.3E-22 T 11-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 AMK58_13750 5b287f6e92abf7cdaac631b8c797ca85 202 SUPERFAMILY SSF58014 35 131 5.1E-25 T 11-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 AMK58_13750 5b287f6e92abf7cdaac631b8c797ca85 202 Pfam PF01025 GrpE 22 187 9.8E-52 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AMK58_13750 5b287f6e92abf7cdaac631b8c797ca85 202 PRINTS PR00773 GrpE protein signature 52 68 1.5E-23 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AMK58_13750 5b287f6e92abf7cdaac631b8c797ca85 202 PRINTS PR00773 GrpE protein signature 166 185 1.5E-23 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AMK58_13750 5b287f6e92abf7cdaac631b8c797ca85 202 PRINTS PR00773 GrpE protein signature 80 95 1.5E-23 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AMK58_13750 5b287f6e92abf7cdaac631b8c797ca85 202 PRINTS PR00773 GrpE protein signature 139 154 1.5E-23 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AMK58_13750 5b287f6e92abf7cdaac631b8c797ca85 202 Gene3D G3DSA:3.90.20.20 2 129 7.8E-23 T 11-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 AMK58_13750 5b287f6e92abf7cdaac631b8c797ca85 202 SUPERFAMILY SSF51064 132 188 8.11E-19 T 11-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 AMK58_09190 9cdc1d788f984fbaf470c8cda1fa6477 430 SUPERFAMILY SSF55205 1 426 1.26E-134 T 11-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 AMK58_09190 9cdc1d788f984fbaf470c8cda1fa6477 430 Gene3D G3DSA:3.65.10.10 6 422 4.5E-160 T 11-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 AMK58_09190 9cdc1d788f984fbaf470c8cda1fa6477 430 Gene3D G3DSA:3.65.10.10 21 238 4.5E-160 T 11-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 AMK58_09190 9cdc1d788f984fbaf470c8cda1fa6477 430 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 425 44.436 T 11-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMK58_09190 9cdc1d788f984fbaf470c8cda1fa6477 430 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 424 7.6E-170 T 11-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMK58_09190 9cdc1d788f984fbaf470c8cda1fa6477 430 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 415 5.0E-96 T 11-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 AMK58_24855 01efed1b01970d7d91a3d2af8fab0bdf 196 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 6 148 2.2E-15 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMK58_24855 01efed1b01970d7d91a3d2af8fab0bdf 196 Pfam PF04542 Sigma-70 region 2 4 55 5.9E-6 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMK58_24855 01efed1b01970d7d91a3d2af8fab0bdf 196 Gene3D G3DSA:1.10.10.10 70 152 1.1E-9 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_24855 01efed1b01970d7d91a3d2af8fab0bdf 196 SUPERFAMILY SSF88946 4 67 1.02E-6 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMK58_24855 01efed1b01970d7d91a3d2af8fab0bdf 196 SUPERFAMILY SSF88659 74 150 4.49E-9 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMK58_01195 64d5cf7044436637bfc982e1f59a4d0c 142 SUPERFAMILY SSF54631 5 135 2.91E-31 T 11-10-2018 AMK58_01195 64d5cf7044436637bfc982e1f59a4d0c 142 Pfam PF00571 CBS domain 72 124 4.5E-11 T 11-10-2018 IPR000644 CBS domain AMK58_01195 64d5cf7044436637bfc982e1f59a4d0c 142 Pfam PF00571 CBS domain 13 56 1.6E-9 T 11-10-2018 IPR000644 CBS domain AMK58_01195 64d5cf7044436637bfc982e1f59a4d0c 142 Gene3D G3DSA:3.10.580.10 1 137 9.3E-38 T 11-10-2018 AMK58_01195 64d5cf7044436637bfc982e1f59a4d0c 142 SMART SM00116 79 126 3.9E-5 T 11-10-2018 IPR000644 CBS domain AMK58_01195 64d5cf7044436637bfc982e1f59a4d0c 142 SMART SM00116 14 61 1.4E-10 T 11-10-2018 IPR000644 CBS domain AMK58_06865 6245c70f976e2b4d8de592dce9932ebe 160 Pfam PF00583 Acetyltransferase (GNAT) family 56 145 2.0E-9 T 11-10-2018 IPR000182 GNAT domain AMK58_06865 6245c70f976e2b4d8de592dce9932ebe 160 SUPERFAMILY SSF55729 28 146 1.73E-17 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_06865 6245c70f976e2b4d8de592dce9932ebe 160 Gene3D G3DSA:3.40.630.30 16 153 1.7E-18 T 11-10-2018 AMK58_12750 eaa8788df7b6e1fe31815605486a816b 557 Pfam PF02743 Cache domain 53 235 6.7E-14 T 11-10-2018 IPR033479 Double Cache domain 1 AMK58_12750 eaa8788df7b6e1fe31815605486a816b 557 PRINTS PR00344 Bacterial sensor protein C-terminal signature 534 547 7.0E-7 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_12750 eaa8788df7b6e1fe31815605486a816b 557 PRINTS PR00344 Bacterial sensor protein C-terminal signature 508 526 7.0E-7 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_12750 eaa8788df7b6e1fe31815605486a816b 557 PRINTS PR00344 Bacterial sensor protein C-terminal signature 487 501 7.0E-7 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_12750 eaa8788df7b6e1fe31815605486a816b 557 Pfam PF07568 Histidine kinase 352 425 6.9E-24 T 11-10-2018 IPR011495 Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain AMK58_12750 eaa8788df7b6e1fe31815605486a816b 557 SMART SM00387 446 550 4.1E-15 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_12750 eaa8788df7b6e1fe31815605486a816b 557 Gene3D G3DSA:3.30.450.20 43 196 1.2E-29 T 11-10-2018 AMK58_12750 eaa8788df7b6e1fe31815605486a816b 557 Gene3D G3DSA:3.30.450.20 312 402 1.9E-8 T 11-10-2018 AMK58_12750 eaa8788df7b6e1fe31815605486a816b 557 SUPERFAMILY SSF55874 412 547 1.63E-17 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_12750 eaa8788df7b6e1fe31815605486a816b 557 Gene3D G3DSA:3.30.565.10 408 556 3.8E-27 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_12750 eaa8788df7b6e1fe31815605486a816b 557 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 449 547 6.2E-9 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_14115 1aa05f9004569f8b40711311950cef75 688 SUPERFAMILY SSF56935 4 688 7.63E-104 T 11-10-2018 AMK58_14115 1aa05f9004569f8b40711311950cef75 688 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 51 688 1.1E-98 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 AMK58_14115 1aa05f9004569f8b40711311950cef75 688 Gene3D G3DSA:2.40.170.20 162 688 7.5E-80 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily AMK58_14115 1aa05f9004569f8b40711311950cef75 688 Pfam PF07715 TonB-dependent Receptor Plug Domain 50 146 6.3E-13 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain AMK58_14115 1aa05f9004569f8b40711311950cef75 688 Pfam PF00593 TonB dependent receptor 245 686 2.4E-37 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel AMK58_14115 1aa05f9004569f8b40711311950cef75 688 Gene3D G3DSA:2.170.130.10 45 161 7.2E-21 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily AMK58_14115 1aa05f9004569f8b40711311950cef75 688 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 671 688 - T 11-10-2018 IPR010917 TonB-dependent receptor, conserved site AMK58_24190 001ce16b0ca93ff0629d8b5f8688d307 1033 SUPERFAMILY SSF82693 556 653 1.57E-11 T 11-10-2018 AMK58_24190 001ce16b0ca93ff0629d8b5f8688d307 1033 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 4.3E-77 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_24190 001ce16b0ca93ff0629d8b5f8688d307 1033 PRINTS PR00702 Acriflavin resistance protein family signature 543 560 4.3E-77 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_24190 001ce16b0ca93ff0629d8b5f8688d307 1033 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 4.3E-77 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_24190 001ce16b0ca93ff0629d8b5f8688d307 1033 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 4.3E-77 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_24190 001ce16b0ca93ff0629d8b5f8688d307 1033 PRINTS PR00702 Acriflavin resistance protein family signature 610 624 4.3E-77 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_24190 001ce16b0ca93ff0629d8b5f8688d307 1033 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 4.3E-77 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_24190 001ce16b0ca93ff0629d8b5f8688d307 1033 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 4.3E-77 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_24190 001ce16b0ca93ff0629d8b5f8688d307 1033 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 4.3E-77 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_24190 001ce16b0ca93ff0629d8b5f8688d307 1033 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 4.3E-77 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_24190 001ce16b0ca93ff0629d8b5f8688d307 1033 SUPERFAMILY SSF82866 290 491 3.53E-47 T 11-10-2018 AMK58_24190 001ce16b0ca93ff0629d8b5f8688d307 1033 Gene3D G3DSA:1.20.1640.10 10 503 2.4E-295 T 11-10-2018 AMK58_24190 001ce16b0ca93ff0629d8b5f8688d307 1033 Gene3D G3DSA:3.30.70.1430 558 653 2.4E-295 T 11-10-2018 AMK58_24190 001ce16b0ca93ff0629d8b5f8688d307 1033 SUPERFAMILY SSF82866 792 1015 2.22E-44 T 11-10-2018 AMK58_24190 001ce16b0ca93ff0629d8b5f8688d307 1033 SUPERFAMILY SSF82714 183 265 3.4E-18 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_24190 001ce16b0ca93ff0629d8b5f8688d307 1033 SUPERFAMILY SSF82693 136 324 1.92E-22 T 11-10-2018 AMK58_24190 001ce16b0ca93ff0629d8b5f8688d307 1033 Gene3D G3DSA:3.30.2090.10 706 794 2.4E-295 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_24190 001ce16b0ca93ff0629d8b5f8688d307 1033 Gene3D G3DSA:3.30.70.1320 133 326 2.4E-295 T 11-10-2018 AMK58_24190 001ce16b0ca93ff0629d8b5f8688d307 1033 Gene3D G3DSA:3.30.70.1430 40 802 2.4E-295 T 11-10-2018 AMK58_24190 001ce16b0ca93ff0629d8b5f8688d307 1033 Gene3D G3DSA:1.20.1640.10 504 1010 2.4E-295 T 11-10-2018 AMK58_24190 001ce16b0ca93ff0629d8b5f8688d307 1033 Gene3D G3DSA:3.30.70.1440 654 852 2.4E-295 T 11-10-2018 AMK58_24190 001ce16b0ca93ff0629d8b5f8688d307 1033 Pfam PF00873 AcrB/AcrD/AcrF family 5 1013 0.0 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_24190 001ce16b0ca93ff0629d8b5f8688d307 1033 SUPERFAMILY SSF82714 710 791 1.01E-13 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_24190 001ce16b0ca93ff0629d8b5f8688d307 1033 SUPERFAMILY SSF82693 40 130 1.46E-22 T 11-10-2018 AMK58_24190 001ce16b0ca93ff0629d8b5f8688d307 1033 Gene3D G3DSA:3.30.2090.10 179 269 2.4E-295 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_28805 30ca0e475b43b22ada313e6e7eafea66 494 Pfam PF00535 Glycosyl transferase family 2 260 387 8.6E-22 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMK58_28805 30ca0e475b43b22ada313e6e7eafea66 494 Gene3D G3DSA:3.90.550.10 241 485 1.0E-36 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_28805 30ca0e475b43b22ada313e6e7eafea66 494 SUPERFAMILY SSF53335 28 212 1.84E-29 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_28805 30ca0e475b43b22ada313e6e7eafea66 494 SUPERFAMILY SSF53448 259 491 3.04E-49 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_28805 30ca0e475b43b22ada313e6e7eafea66 494 Gene3D G3DSA:3.40.50.150 19 213 5.9E-31 T 11-10-2018 AMK58_28805 30ca0e475b43b22ada313e6e7eafea66 494 Pfam PF13489 Methyltransferase domain 49 206 5.0E-19 T 11-10-2018 AMK58_11950 cca42d9f4561b014e72a050748f609e0 212 SUPERFAMILY SSF55120 3 181 8.8E-44 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMK58_11950 cca42d9f4561b014e72a050748f609e0 212 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 8 178 1.9E-56 T 11-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 AMK58_11950 cca42d9f4561b014e72a050748f609e0 212 Gene3D G3DSA:3.30.70.580 1 67 8.9E-25 T 11-10-2018 AMK58_11950 cca42d9f4561b014e72a050748f609e0 212 Pfam PF00849 RNA pseudouridylate synthase 4 149 2.8E-14 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMK58_11950 cca42d9f4561b014e72a050748f609e0 212 Gene3D G3DSA:3.30.70.1560 68 168 4.7E-43 T 11-10-2018 AMK58_27150 36f709dc39d31787392e3c8155790fb9 244 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 100 152 1.0E-13 T 11-10-2018 AMK58_27150 36f709dc39d31787392e3c8155790fb9 244 Gene3D G3DSA:3.30.930.10 27 237 1.2E-65 T 11-10-2018 AMK58_27150 36f709dc39d31787392e3c8155790fb9 244 Pfam PF03099 Biotin/lipoate A/B protein ligase family 81 193 1.2E-9 T 11-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 AMK58_27150 36f709dc39d31787392e3c8155790fb9 244 SUPERFAMILY SSF55681 30 238 1.99E-66 T 11-10-2018 AMK58_27150 36f709dc39d31787392e3c8155790fb9 244 Hamap MF_00013 Octanoyltransferase [lipB]. 28 240 35.742 T 11-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AMK58_27150 36f709dc39d31787392e3c8155790fb9 244 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 61 238 1.8E-49 T 11-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AMK58_27150 36f709dc39d31787392e3c8155790fb9 244 PIRSF PIRSF016262 25 240 1.3E-58 T 11-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AMK58_27150 36f709dc39d31787392e3c8155790fb9 244 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 95 110 - T 11-10-2018 IPR020605 Octanoyltransferase, conserved site GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 AMK58_15790 4e3cc3cab58cd43efd11fa81b3a82c0b 442 SMART SM00387 335 442 9.0E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_15790 4e3cc3cab58cd43efd11fa81b3a82c0b 442 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 340 441 2.1E-18 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_15790 4e3cc3cab58cd43efd11fa81b3a82c0b 442 SMART SM00388 239 297 3.5E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_15790 4e3cc3cab58cd43efd11fa81b3a82c0b 442 SMART SM00304 186 238 4.6E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_15790 4e3cc3cab58cd43efd11fa81b3a82c0b 442 SUPERFAMILY SSF55874 290 442 1.57E-32 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_15790 4e3cc3cab58cd43efd11fa81b3a82c0b 442 Gene3D G3DSA:3.30.565.10 299 442 4.0E-31 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_15790 4e3cc3cab58cd43efd11fa81b3a82c0b 442 Pfam PF00672 HAMP domain 186 235 1.0E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_15790 4e3cc3cab58cd43efd11fa81b3a82c0b 442 Pfam PF00512 His Kinase A (phospho-acceptor) domain 240 295 3.5E-8 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_15790 4e3cc3cab58cd43efd11fa81b3a82c0b 442 PRINTS PR00344 Bacterial sensor protein C-terminal signature 387 397 4.4E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_15790 4e3cc3cab58cd43efd11fa81b3a82c0b 442 PRINTS PR00344 Bacterial sensor protein C-terminal signature 369 383 4.4E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_15790 4e3cc3cab58cd43efd11fa81b3a82c0b 442 PRINTS PR00344 Bacterial sensor protein C-terminal signature 428 441 4.4E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_15790 4e3cc3cab58cd43efd11fa81b3a82c0b 442 PRINTS PR00344 Bacterial sensor protein C-terminal signature 404 422 4.4E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_15790 4e3cc3cab58cd43efd11fa81b3a82c0b 442 SUPERFAMILY SSF47384 223 295 2.35E-13 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_15790 4e3cc3cab58cd43efd11fa81b3a82c0b 442 Gene3D G3DSA:1.10.287.130 190 297 1.7E-20 T 11-10-2018 AMK58_26760 d9862257fbefc20782c15793b5b35109 250 PIRSF PIRSF000349 20 248 2.0E-77 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMK58_26760 d9862257fbefc20782c15793b5b35109 250 PRINTS PR01703 Manganese superoxide dismutase signature 204 216 5.2E-23 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMK58_26760 d9862257fbefc20782c15793b5b35109 250 PRINTS PR01703 Manganese superoxide dismutase signature 46 57 5.2E-23 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMK58_26760 d9862257fbefc20782c15793b5b35109 250 PRINTS PR01703 Manganese superoxide dismutase signature 67 80 5.2E-23 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMK58_26760 d9862257fbefc20782c15793b5b35109 250 PRINTS PR01703 Manganese superoxide dismutase signature 113 126 5.2E-23 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMK58_26760 d9862257fbefc20782c15793b5b35109 250 PRINTS PR01703 Manganese superoxide dismutase signature 166 174 5.2E-23 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMK58_26760 d9862257fbefc20782c15793b5b35109 250 SUPERFAMILY SSF46609 43 131 1.7E-34 T 11-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMK58_26760 d9862257fbefc20782c15793b5b35109 250 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 43 129 2.6E-28 T 11-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMK58_26760 d9862257fbefc20782c15793b5b35109 250 Gene3D G3DSA:2.40.500.20 131 250 2.6E-43 T 11-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMK58_26760 d9862257fbefc20782c15793b5b35109 250 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 206 213 - T 11-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMK58_26760 d9862257fbefc20782c15793b5b35109 250 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 137 239 6.8E-36 T 11-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMK58_26760 d9862257fbefc20782c15793b5b35109 250 SUPERFAMILY SSF54719 130 244 6.02E-42 T 11-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMK58_26760 d9862257fbefc20782c15793b5b35109 250 Gene3D G3DSA:1.10.287.990 60 130 3.4E-30 T 11-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMK58_05735 98d4acb9d8b66438681ad7e22c6bb63b 251 Gene3D G3DSA:3.40.50.720 1 251 5.6E-75 T 11-10-2018 AMK58_05735 98d4acb9d8b66438681ad7e22c6bb63b 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 250 1.0E-58 T 11-10-2018 AMK58_05735 98d4acb9d8b66438681ad7e22c6bb63b 251 SUPERFAMILY SSF51735 3 250 5.0E-72 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_05735 98d4acb9d8b66438681ad7e22c6bb63b 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 1.7E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_05735 98d4acb9d8b66438681ad7e22c6bb63b 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.7E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_05735 98d4acb9d8b66438681ad7e22c6bb63b 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 1.7E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_05735 98d4acb9d8b66438681ad7e22c6bb63b 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 1.7E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_05735 98d4acb9d8b66438681ad7e22c6bb63b 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 1.7E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_05735 98d4acb9d8b66438681ad7e22c6bb63b 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 1.7E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_05735 98d4acb9d8b66438681ad7e22c6bb63b 251 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 147 175 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMK58_05735 98d4acb9d8b66438681ad7e22c6bb63b 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 4.9E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_05735 98d4acb9d8b66438681ad7e22c6bb63b 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 179 4.9E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_05735 98d4acb9d8b66438681ad7e22c6bb63b 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 4.9E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_06775 2a35aa1254fbf6cfab0f22adb1d0bc60 321 Gene3D G3DSA:3.30.540.10 5 312 2.2E-132 T 11-10-2018 AMK58_06775 2a35aa1254fbf6cfab0f22adb1d0bc60 321 Gene3D G3DSA:3.40.190.90 123 287 2.2E-132 T 11-10-2018 AMK58_06775 2a35aa1254fbf6cfab0f22adb1d0bc60 321 TIGRFAM TIGR00330 glpX: fructose-1,6-bisphosphatase, class II 1 320 7.7E-109 T 11-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 AMK58_06775 2a35aa1254fbf6cfab0f22adb1d0bc60 321 Pfam PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded 3 312 5.3E-139 T 11-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 AMK58_06775 2a35aa1254fbf6cfab0f22adb1d0bc60 321 SUPERFAMILY SSF56655 1 315 1.68E-108 T 11-10-2018 AMK58_06775 2a35aa1254fbf6cfab0f22adb1d0bc60 321 PIRSF PIRSF004532 1 321 1.2E-139 T 11-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 AMK58_14565 a321e0c6ce23b5fee4091360aa8afc07 211 Pfam PF05494 MlaC protein 45 201 3.2E-30 T 11-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC AMK58_14565 a321e0c6ce23b5fee4091360aa8afc07 211 Gene3D G3DSA:1.10.10.640 76 200 3.5E-22 T 11-10-2018 AMK58_14565 a321e0c6ce23b5fee4091360aa8afc07 211 Gene3D G3DSA:3.10.450.50 52 175 3.5E-22 T 11-10-2018 AMK58_10160 1b47747c970bcbe68ae0abe96940c693 139 SUPERFAMILY SSF109635 5 97 1.7E-32 T 11-10-2018 IPR037187 DksA, N-terminal domain superfamily AMK58_10160 1b47747c970bcbe68ae0abe96940c693 139 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 96 131 6.4E-11 T 11-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 AMK58_10160 1b47747c970bcbe68ae0abe96940c693 139 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 15 137 27.979 T 11-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 AMK58_10160 1b47747c970bcbe68ae0abe96940c693 139 Gene3D G3DSA:1.20.120.910 6 139 1.7E-37 T 11-10-2018 AMK58_10160 1b47747c970bcbe68ae0abe96940c693 139 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 19 128 3.5E-43 T 11-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 AMK58_10160 1b47747c970bcbe68ae0abe96940c693 139 SUPERFAMILY SSF57716 98 136 2.42E-8 T 11-10-2018 AMK58_10160 1b47747c970bcbe68ae0abe96940c693 139 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 101 125 - T 11-10-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site AMK58_10505 fe55a63dde89430def96b7a24110f00b 434 Pfam PF10082 Putative beta-barrel porin 2 43 434 4.6E-137 T 11-10-2018 IPR018759 Putative beta-barrel porin 2 AMK58_14570 acdb011a0d7bb9f289324b50a80819ce 364 Pfam PF13469 Sulfotransferase family 68 314 9.6E-30 T 11-10-2018 AMK58_14570 acdb011a0d7bb9f289324b50a80819ce 364 SUPERFAMILY SSF52540 65 360 7.21E-29 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_14570 acdb011a0d7bb9f289324b50a80819ce 364 Gene3D G3DSA:3.40.50.300 25 363 1.1E-61 T 11-10-2018 AMK58_00835 c87c35d952c59c924e5b4eee64c7fb66 329 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 154 181 - T 11-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 AMK58_00835 c87c35d952c59c924e5b4eee64c7fb66 329 Gene3D G3DSA:3.40.50.720 9 303 1.8E-111 T 11-10-2018 AMK58_00835 c87c35d952c59c924e5b4eee64c7fb66 329 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 114 293 2.2E-58 T 11-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AMK58_00835 c87c35d952c59c924e5b4eee64c7fb66 329 SUPERFAMILY SSF51735 106 294 1.47E-60 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_00835 c87c35d952c59c924e5b4eee64c7fb66 329 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 19 324 1.1E-31 T 11-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 AMK58_00835 c87c35d952c59c924e5b4eee64c7fb66 329 Gene3D G3DSA:3.40.50.720 106 289 1.8E-111 T 11-10-2018 AMK58_00835 c87c35d952c59c924e5b4eee64c7fb66 329 SUPERFAMILY SSF52283 6 139 9.26E-38 T 11-10-2018 AMK58_21035 888a95e31698ce973f9895a731214051 766 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 196 736 5.2E-120 T 11-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 AMK58_21035 888a95e31698ce973f9895a731214051 766 SUPERFAMILY SSF47831 214 333 5.49E-26 T 11-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 AMK58_21035 888a95e31698ce973f9895a731214051 766 Pfam PF13185 GAF domain 41 171 5.3E-13 T 11-10-2018 IPR003018 GAF domain GO:0005515 AMK58_21035 888a95e31698ce973f9895a731214051 766 Pfam PF00391 PEP-utilising enzyme, mobile domain 343 415 5.9E-15 T 11-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AMK58_21035 888a95e31698ce973f9895a731214051 766 Gene3D G3DSA:3.20.20.60 426 757 3.2E-93 T 11-10-2018 AMK58_21035 888a95e31698ce973f9895a731214051 766 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 638 656 - T 11-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 AMK58_21035 888a95e31698ce973f9895a731214051 766 Gene3D G3DSA:1.10.274.10 215 336 3.7E-54 T 11-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 AMK58_21035 888a95e31698ce973f9895a731214051 766 SUPERFAMILY SSF52009 315 429 2.75E-22 T 11-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 AMK58_21035 888a95e31698ce973f9895a731214051 766 Pfam PF05524 PEP-utilising enzyme, N-terminal 198 316 2.3E-23 T 11-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 AMK58_21035 888a95e31698ce973f9895a731214051 766 SMART SM00065 36 182 1.5E-15 T 11-10-2018 IPR003018 GAF domain GO:0005515 AMK58_21035 888a95e31698ce973f9895a731214051 766 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 655 670 4.2E-19 T 11-10-2018 AMK58_21035 888a95e31698ce973f9895a731214051 766 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 638 653 4.2E-19 T 11-10-2018 AMK58_21035 888a95e31698ce973f9895a731214051 766 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 691 703 4.2E-19 T 11-10-2018 AMK58_21035 888a95e31698ce973f9895a731214051 766 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 483 502 4.2E-19 T 11-10-2018 AMK58_21035 888a95e31698ce973f9895a731214051 766 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 444 732 3.6E-88 T 11-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 AMK58_21035 888a95e31698ce973f9895a731214051 766 SUPERFAMILY SSF51621 440 739 4.97E-92 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMK58_21035 888a95e31698ce973f9895a731214051 766 SUPERFAMILY SSF55781 22 169 1.0E-24 T 11-10-2018 AMK58_21035 888a95e31698ce973f9895a731214051 766 Gene3D G3DSA:3.50.30.10 198 424 3.7E-54 T 11-10-2018 AMK58_21035 888a95e31698ce973f9895a731214051 766 Gene3D G3DSA:3.30.450.40 19 179 1.7E-33 T 11-10-2018 IPR029016 GAF-like domain superfamily AMK58_12125 971b88d26b80d086b9a8c982555ecf5f 181 Pfam PF14557 Putative AphA-like transcriptional regulator 2 177 7.1E-79 T 11-10-2018 IPR029434 Putative transcriptional regulator AMK58_12125 971b88d26b80d086b9a8c982555ecf5f 181 Gene3D G3DSA:1.10.10.10 1 101 7.9E-38 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_12125 971b88d26b80d086b9a8c982555ecf5f 181 Gene3D G3DSA:1.20.1280.20 104 181 2.9E-26 T 11-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AMK58_12125 971b88d26b80d086b9a8c982555ecf5f 181 SUPERFAMILY SSF46785 13 180 1.97E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_22525 a0652c1ac05dd13f3a4a759e095fa73b 597 SUPERFAMILY SSF161098 27 298 5.14E-48 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_22525 a0652c1ac05dd13f3a4a759e095fa73b 597 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 99 292 5.6E-11 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_22525 a0652c1ac05dd13f3a4a759e095fa73b 597 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 395 568 4.9E-8 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_22525 a0652c1ac05dd13f3a4a759e095fa73b 597 Gene3D G3DSA:1.10.3720.10 321 577 7.8E-42 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_22525 a0652c1ac05dd13f3a4a759e095fa73b 597 Gene3D G3DSA:1.10.3720.10 26 304 9.7E-51 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_22525 a0652c1ac05dd13f3a4a759e095fa73b 597 SUPERFAMILY SSF161098 318 568 1.31E-40 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_26230 18c2c91e4a8fb238358b1d799c3e9791 446 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 5 438 3.7E-154 T 11-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMK58_26230 18c2c91e4a8fb238358b1d799c3e9791 446 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 349 358 - T 11-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMK58_26230 18c2c91e4a8fb238358b1d799c3e9791 446 SMART SM00382 159 343 1.3E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_26230 18c2c91e4a8fb238358b1d799c3e9791 446 SUPERFAMILY SSF52540 93 362 1.38E-93 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_26230 18c2c91e4a8fb238358b1d799c3e9791 446 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 147 358 3.2E-71 T 11-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMK58_26230 18c2c91e4a8fb238358b1d799c3e9791 446 TIGRFAM TIGR03498 FliI_clade3: flagellar protein export ATPase FliI 21 437 2.9E-189 T 11-10-2018 IPR022426 Flagellum-specific ATP synthase FliI, clade 3 GO:0009288|GO:0016887|GO:0030257|GO:0044781 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMK58_26230 18c2c91e4a8fb238358b1d799c3e9791 446 Gene3D G3DSA:3.40.50.12240 13 441 7.3E-140 T 11-10-2018 AMK58_19375 cd34df11057328d5d6589f0828ded835 247 Pfam PF06707 Protein of unknown function (DUF1194) 39 234 2.4E-53 T 11-10-2018 IPR010607 Protein of unknown function DUF1194 AMK58_19375 cd34df11057328d5d6589f0828ded835 247 SUPERFAMILY SSF53300 39 233 7.31E-22 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMK58_19375 cd34df11057328d5d6589f0828ded835 247 Gene3D G3DSA:3.40.50.410 42 238 1.6E-13 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMK58_21715 8712b697c0e570bc89b4f658e4fb519d 662 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 46 490 4.6E-164 T 11-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 AMK58_21715 8712b697c0e570bc89b4f658e4fb519d 662 ProSitePatterns PS01303 BCCT family of transporters signature. 308 317 - T 11-10-2018 IPR018093 BCCT transporter, conserved site AMK58_21715 8712b697c0e570bc89b4f658e4fb519d 662 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 8 489 1.5E-195 T 11-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 AMK58_05030 0c30ce370ae56e46529f4f3536d9a0e9 436 Pfam PF13406 Transglycosylase SLT domain 56 349 8.4E-108 T 11-10-2018 IPR031304 Transglycosylase SLT domain 2 AMK58_05030 0c30ce370ae56e46529f4f3536d9a0e9 436 Gene3D G3DSA:1.10.101.10 368 431 3.8E-12 T 11-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 AMK58_05030 0c30ce370ae56e46529f4f3536d9a0e9 436 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 56 353 1.6E-113 T 11-10-2018 IPR011970 Lytic murein transglycosylase AMK58_05030 0c30ce370ae56e46529f4f3536d9a0e9 436 SUPERFAMILY SSF53955 46 354 2.25E-95 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily AMK58_05030 0c30ce370ae56e46529f4f3536d9a0e9 436 Gene3D G3DSA:1.10.530.10 99 348 5.8E-84 T 11-10-2018 AMK58_05030 0c30ce370ae56e46529f4f3536d9a0e9 436 Gene3D G3DSA:1.10.8.350 71 232 5.8E-84 T 11-10-2018 AMK58_05030 0c30ce370ae56e46529f4f3536d9a0e9 436 SUPERFAMILY SSF47090 358 429 3.92E-17 T 11-10-2018 IPR036365 PGBD-like superfamily AMK58_05030 0c30ce370ae56e46529f4f3536d9a0e9 436 Pfam PF01471 Putative peptidoglycan binding domain 370 424 5.6E-10 T 11-10-2018 IPR002477 Peptidoglycan binding-like AMK58_22570 2f567c8613e3751dab8bf709641e3294 399 SUPERFAMILY SSF56645 17 215 2.62E-31 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMK58_22570 2f567c8613e3751dab8bf709641e3294 399 Gene3D G3DSA:1.20.140.10 236 385 3.2E-18 T 11-10-2018 AMK58_22570 2f567c8613e3751dab8bf709641e3294 399 PIRSF PIRSF016578 1 391 2.0E-18 T 11-10-2018 AMK58_22570 2f567c8613e3751dab8bf709641e3294 399 Gene3D G3DSA:1.10.540.10 10 120 3.0E-23 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMK58_22570 2f567c8613e3751dab8bf709641e3294 399 Gene3D G3DSA:2.40.110.10 136 223 3.7E-8 T 11-10-2018 AMK58_22570 2f567c8613e3751dab8bf709641e3294 399 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 26 102 7.8E-11 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMK58_22570 2f567c8613e3751dab8bf709641e3294 399 SUPERFAMILY SSF47203 238 381 2.28E-12 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMK58_22570 2f567c8613e3751dab8bf709641e3294 399 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 250 371 1.1E-7 T 11-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain AMK58_02285 84988f06a749c8c11f8185cbf2692b1c 209 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 49 65 5.6E-4 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_02285 84988f06a749c8c11f8185cbf2692b1c 209 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 66 83 0.0012 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_02285 84988f06a749c8c11f8185cbf2692b1c 209 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 31 42 0.26 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_02285 84988f06a749c8c11f8185cbf2692b1c 209 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 94 109 1.7E-4 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_02285 84988f06a749c8c11f8185cbf2692b1c 209 Gene3D G3DSA:2.150.10.10 30 69 4.8E-11 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_02285 84988f06a749c8c11f8185cbf2692b1c 209 Gene3D G3DSA:2.150.10.10 70 206 2.1E-15 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_02285 84988f06a749c8c11f8185cbf2692b1c 209 SUPERFAMILY SSF51120 30 199 3.66E-28 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_02285 84988f06a749c8c11f8185cbf2692b1c 209 PRINTS PR00313 NodO calcium binding signature 103 112 2.1E-12 T 11-10-2018 AMK58_02285 84988f06a749c8c11f8185cbf2692b1c 209 PRINTS PR00313 NodO calcium binding signature 67 75 2.1E-12 T 11-10-2018 AMK58_02285 84988f06a749c8c11f8185cbf2692b1c 209 PRINTS PR00313 NodO calcium binding signature 46 57 2.1E-12 T 11-10-2018 AMK58_02285 84988f06a749c8c11f8185cbf2692b1c 209 PRINTS PR00313 NodO calcium binding signature 76 84 2.1E-12 T 11-10-2018 AMK58_02285 84988f06a749c8c11f8185cbf2692b1c 209 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 63 81 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_14800 2232cc25494e808da66d6196f4a8eb25 241 Gene3D G3DSA:3.40.50.300 4 239 4.3E-60 T 11-10-2018 AMK58_14800 2232cc25494e808da66d6196f4a8eb25 241 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 215 237 6.2E-10 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AMK58_14800 2232cc25494e808da66d6196f4a8eb25 241 SUPERFAMILY SSF52540 4 237 5.75E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_14800 2232cc25494e808da66d6196f4a8eb25 241 SMART SM00382 29 215 1.2E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_14800 2232cc25494e808da66d6196f4a8eb25 241 Pfam PF00005 ABC transporter 21 164 3.8E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_13555 c4a8127a5f1ad03569e8dfbbb255ba11 198 Gene3D G3DSA:2.60.130.10 3 198 1.9E-53 T 11-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AMK58_13555 c4a8127a5f1ad03569e8dfbbb255ba11 198 Pfam PF00775 Dioxygenase 24 197 1.2E-26 T 11-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 AMK58_13555 c4a8127a5f1ad03569e8dfbbb255ba11 198 SUPERFAMILY SSF49482 11 196 8.63E-53 T 11-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AMK58_20270 2d237515f674001009421a5ee08436cb 400 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 143 234 3.1E-21 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMK58_20270 2d237515f674001009421a5ee08436cb 400 Gene3D G3DSA:1.20.140.10 249 400 5.4E-39 T 11-10-2018 AMK58_20270 2d237515f674001009421a5ee08436cb 400 SUPERFAMILY SSF47203 252 397 3.22E-40 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMK58_20270 2d237515f674001009421a5ee08436cb 400 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 145 157 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMK58_20270 2d237515f674001009421a5ee08436cb 400 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 352 371 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMK58_20270 2d237515f674001009421a5ee08436cb 400 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 253 393 3.0E-26 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMK58_20270 2d237515f674001009421a5ee08436cb 400 SUPERFAMILY SSF56645 15 245 3.66E-77 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMK58_20270 2d237515f674001009421a5ee08436cb 400 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 28 139 6.9E-31 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMK58_20270 2d237515f674001009421a5ee08436cb 400 Gene3D G3DSA:1.10.540.10 14 140 4.1E-39 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMK58_20270 2d237515f674001009421a5ee08436cb 400 Gene3D G3DSA:2.40.110.10 142 246 3.8E-39 T 11-10-2018 AMK58_11745 d32d969ea7f111484ac45488bf90e73e 479 Gene3D G3DSA:1.10.1140.10 359 479 4.1E-60 T 11-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMK58_11745 d32d969ea7f111484ac45488bf90e73e 479 PIRSF PIRSF039072 1 479 2.4E-285 T 11-10-2018 AMK58_11745 d32d969ea7f111484ac45488bf90e73e 479 Hamap MF_01347 ATP synthase subunit beta [atpB]. 9 474 58.164 T 11-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 AMK58_11745 d32d969ea7f111484ac45488bf90e73e 479 SUPERFAMILY SSF47917 359 474 2.54E-54 T 11-10-2018 AMK58_11745 d32d969ea7f111484ac45488bf90e73e 479 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 347 356 - T 11-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMK58_11745 d32d969ea7f111484ac45488bf90e73e 479 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 14 80 1.4E-22 T 11-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMK58_11745 d32d969ea7f111484ac45488bf90e73e 479 SMART SM00382 149 333 6.3E-5 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_11745 d32d969ea7f111484ac45488bf90e73e 479 Gene3D G3DSA:2.40.10.170 7 82 7.5E-34 T 11-10-2018 AMK58_11745 d32d969ea7f111484ac45488bf90e73e 479 SUPERFAMILY SSF52540 84 361 8.07E-88 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_11745 d32d969ea7f111484ac45488bf90e73e 479 SUPERFAMILY SSF50615 8 82 4.19E-26 T 11-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMK58_11745 d32d969ea7f111484ac45488bf90e73e 479 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 11 474 8.7E-255 T 11-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 AMK58_11745 d32d969ea7f111484ac45488bf90e73e 479 Gene3D G3DSA:3.40.50.300 83 358 1.4E-117 T 11-10-2018 AMK58_11745 d32d969ea7f111484ac45488bf90e73e 479 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 137 356 4.9E-62 T 11-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMK58_11515 baf82e07d435458a02bed786f0208c76 623 Gene3D G3DSA:1.10.287.130 354 452 1.2E-16 T 11-10-2018 AMK58_11515 baf82e07d435458a02bed786f0208c76 623 SMART SM00387 498 609 1.1E-28 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_11515 baf82e07d435458a02bed786f0208c76 623 SUPERFAMILY SSF55874 443 607 3.93E-37 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_11515 baf82e07d435458a02bed786f0208c76 623 SMART SM00388 389 454 5.1E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_11515 baf82e07d435458a02bed786f0208c76 623 PRINTS PR00344 Bacterial sensor protein C-terminal signature 534 548 6.4E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_11515 baf82e07d435458a02bed786f0208c76 623 PRINTS PR00344 Bacterial sensor protein C-terminal signature 552 562 6.4E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_11515 baf82e07d435458a02bed786f0208c76 623 PRINTS PR00344 Bacterial sensor protein C-terminal signature 569 587 6.4E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_11515 baf82e07d435458a02bed786f0208c76 623 PRINTS PR00344 Bacterial sensor protein C-terminal signature 593 606 6.4E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_11515 baf82e07d435458a02bed786f0208c76 623 Gene3D G3DSA:3.30.450.350 109 320 2.3E-50 T 11-10-2018 AMK58_11515 baf82e07d435458a02bed786f0208c76 623 SUPERFAMILY SSF47384 374 454 1.1E-14 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_11515 baf82e07d435458a02bed786f0208c76 623 Pfam PF03924 CHASE domain 108 296 2.2E-64 T 11-10-2018 IPR006189 CHASE domain AMK58_11515 baf82e07d435458a02bed786f0208c76 623 SMART SM01079 105 298 9.8E-79 T 11-10-2018 IPR006189 CHASE domain AMK58_11515 baf82e07d435458a02bed786f0208c76 623 Gene3D G3DSA:3.30.565.10 454 609 2.2E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_11515 baf82e07d435458a02bed786f0208c76 623 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 499 608 1.3E-21 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_11515 baf82e07d435458a02bed786f0208c76 623 Pfam PF00512 His Kinase A (phospho-acceptor) domain 389 454 1.2E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_15335 cb9069a6a3631758578eafea87476ded 356 Pfam PF13384 Homeodomain-like domain 29 76 1.9E-11 T 11-10-2018 AMK58_15335 cb9069a6a3631758578eafea87476ded 356 SUPERFAMILY SSF46689 22 133 3.76E-12 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_15335 cb9069a6a3631758578eafea87476ded 356 Pfam PF13358 DDE superfamily endonuclease 172 318 4.9E-19 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain AMK58_15335 cb9069a6a3631758578eafea87476ded 356 SUPERFAMILY SSF53098 203 330 2.47E-5 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMK58_12500 a76c75cdfa1603c2f355ef1038ec1ebf 382 SUPERFAMILY SSF56796 20 377 9.42E-107 T 11-10-2018 AMK58_12500 a76c75cdfa1603c2f355ef1038ec1ebf 382 Gene3D G3DSA:1.20.1090.10 188 380 4.4E-59 T 11-10-2018 AMK58_12500 a76c75cdfa1603c2f355ef1038ec1ebf 382 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 26 369 4.0E-107 T 11-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 AMK58_12500 a76c75cdfa1603c2f355ef1038ec1ebf 382 Gene3D G3DSA:3.40.50.1970 3 187 9.9E-60 T 11-10-2018 AMK58_12500 a76c75cdfa1603c2f355ef1038ec1ebf 382 Pfam PF01761 3-dehydroquinate synthase 82 345 2.3E-98 T 11-10-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 AMK58_12500 a76c75cdfa1603c2f355ef1038ec1ebf 382 PIRSF PIRSF001455 17 381 2.2E-100 T 11-10-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 AMK58_12500 a76c75cdfa1603c2f355ef1038ec1ebf 382 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 14 376 67.459 T 11-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 AMK58_14690 c0a569e26f35ae490b8f6d8f96aa8604 476 ProSitePatterns PS00163 Fumarate lyases signature. 294 303 - T 11-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 AMK58_14690 c0a569e26f35ae490b8f6d8f96aa8604 476 PRINTS PR00149 Fumarate lyase superfamily signature 121 139 5.5E-30 T 11-10-2018 IPR000362 Fumarate lyase family AMK58_14690 c0a569e26f35ae490b8f6d8f96aa8604 476 PRINTS PR00149 Fumarate lyase superfamily signature 166 184 5.5E-30 T 11-10-2018 IPR000362 Fumarate lyase family AMK58_14690 c0a569e26f35ae490b8f6d8f96aa8604 476 PRINTS PR00149 Fumarate lyase superfamily signature 294 310 5.5E-30 T 11-10-2018 IPR000362 Fumarate lyase family AMK58_14690 c0a569e26f35ae490b8f6d8f96aa8604 476 PRINTS PR00149 Fumarate lyase superfamily signature 250 277 5.5E-30 T 11-10-2018 IPR000362 Fumarate lyase family AMK58_14690 c0a569e26f35ae490b8f6d8f96aa8604 476 Pfam PF00206 Lyase 27 319 9.0E-81 T 11-10-2018 IPR022761 Fumarate lyase, N-terminal AMK58_14690 c0a569e26f35ae490b8f6d8f96aa8604 476 Gene3D G3DSA:1.10.40.30 379 452 1.6E-189 T 11-10-2018 AMK58_14690 c0a569e26f35ae490b8f6d8f96aa8604 476 TIGRFAM TIGR00838 argH: argininosuccinate lyase 22 474 2.4E-183 T 11-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMK58_14690 c0a569e26f35ae490b8f6d8f96aa8604 476 SUPERFAMILY SSF48557 22 474 8.95E-149 T 11-10-2018 IPR008948 L-Aspartase-like GO:0003824 AMK58_14690 c0a569e26f35ae490b8f6d8f96aa8604 476 Hamap MF_00006 Argininosuccinate lyase [argH]. 21 473 42.439 T 11-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMK58_14690 c0a569e26f35ae490b8f6d8f96aa8604 476 Gene3D G3DSA:1.10.275.10 44 248 1.6E-189 T 11-10-2018 IPR024083 Fumarase/histidase, N-terminal AMK58_14690 c0a569e26f35ae490b8f6d8f96aa8604 476 Pfam PF14698 Argininosuccinate lyase C-terminal 382 450 2.8E-24 T 11-10-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMK58_14690 c0a569e26f35ae490b8f6d8f96aa8604 476 PRINTS PR00145 Argininosuccinate lyase family signature 212 228 6.7E-68 T 11-10-2018 AMK58_14690 c0a569e26f35ae490b8f6d8f96aa8604 476 PRINTS PR00145 Argininosuccinate lyase family signature 161 181 6.7E-68 T 11-10-2018 AMK58_14690 c0a569e26f35ae490b8f6d8f96aa8604 476 PRINTS PR00145 Argininosuccinate lyase family signature 120 142 6.7E-68 T 11-10-2018 AMK58_14690 c0a569e26f35ae490b8f6d8f96aa8604 476 PRINTS PR00145 Argininosuccinate lyase family signature 329 348 6.7E-68 T 11-10-2018 AMK58_14690 c0a569e26f35ae490b8f6d8f96aa8604 476 PRINTS PR00145 Argininosuccinate lyase family signature 250 274 6.7E-68 T 11-10-2018 AMK58_14690 c0a569e26f35ae490b8f6d8f96aa8604 476 PRINTS PR00145 Argininosuccinate lyase family signature 294 310 6.7E-68 T 11-10-2018 AMK58_14690 c0a569e26f35ae490b8f6d8f96aa8604 476 Gene3D G3DSA:1.20.200.10 138 467 1.6E-189 T 11-10-2018 AMK58_19805 f51c1186785ae4e66ca96f3c729a1935 419 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 34 57 - T 11-10-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 AMK58_19805 f51c1186785ae4e66ca96f3c729a1935 419 SUPERFAMILY SSF63411 221 410 6.38E-43 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMK58_19805 f51c1186785ae4e66ca96f3c729a1935 419 Pfam PF00675 Insulinase (Peptidase family M16) 13 161 1.7E-39 T 11-10-2018 IPR011765 Peptidase M16, N-terminal AMK58_19805 f51c1186785ae4e66ca96f3c729a1935 419 Gene3D G3DSA:3.30.830.10 221 412 1.2E-53 T 11-10-2018 AMK58_19805 f51c1186785ae4e66ca96f3c729a1935 419 Pfam PF05193 Peptidase M16 inactive domain 177 337 8.7E-36 T 11-10-2018 IPR007863 Peptidase M16, C-terminal AMK58_19805 f51c1186785ae4e66ca96f3c729a1935 419 SUPERFAMILY SSF63411 2 205 2.38E-53 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMK58_19805 f51c1186785ae4e66ca96f3c729a1935 419 Gene3D G3DSA:3.30.830.10 3 216 7.9E-66 T 11-10-2018 AMK58_16785 5cca52173a7b78b709168cf41c6551f8 399 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 32 393 3.2E-99 T 11-10-2018 IPR006261 dNTP triphosphohydrolase GO:0016793 AMK58_16785 5cca52173a7b78b709168cf41c6551f8 399 SMART SM00471 66 220 5.8E-11 T 11-10-2018 IPR003607 HD/PDEase domain AMK58_16785 5cca52173a7b78b709168cf41c6551f8 399 Gene3D G3DSA:1.10.3210.10 2 394 2.2E-130 T 11-10-2018 AMK58_16785 5cca52173a7b78b709168cf41c6551f8 399 SUPERFAMILY SSF109604 21 394 3.97E-92 T 11-10-2018 AMK58_16785 5cca52173a7b78b709168cf41c6551f8 399 Hamap MF_01212 Deoxyguanosinetriphosphate triphosphohydrolase-like protein. 10 393 39.31 T 11-10-2018 IPR023023 dNTP triphosphohydrolase, type 2 GO:0016793 AMK58_16785 5cca52173a7b78b709168cf41c6551f8 399 Pfam PF13286 Phosphohydrolase-associated domain 297 391 8.8E-27 T 11-10-2018 IPR026875 Phosphohydrolase-associated domain AMK58_16785 5cca52173a7b78b709168cf41c6551f8 399 Pfam PF01966 HD domain 70 210 9.8E-16 T 11-10-2018 IPR006674 HD domain AMK58_24335 f6fcebc6565f4a7839257b13e59b4914 427 Pfam PF01425 Amidase 25 415 3.8E-78 T 11-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMK58_24335 f6fcebc6565f4a7839257b13e59b4914 427 Gene3D G3DSA:3.90.1300.10 6 426 4.4E-123 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMK58_24335 f6fcebc6565f4a7839257b13e59b4914 427 SUPERFAMILY SSF75304 2 421 2.49E-113 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMK58_12560 bfa1e96419d576b9cb6a3ab3e334fdf9 545 SUPERFAMILY SSF161098 5 258 1.44E-42 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_12560 bfa1e96419d576b9cb6a3ab3e334fdf9 545 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 65 252 3.0E-12 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_12560 bfa1e96419d576b9cb6a3ab3e334fdf9 545 SUPERFAMILY SSF161098 280 532 1.01E-30 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_12560 bfa1e96419d576b9cb6a3ab3e334fdf9 545 Gene3D G3DSA:1.10.3720.10 5 265 1.0E-52 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_12560 bfa1e96419d576b9cb6a3ab3e334fdf9 545 Gene3D G3DSA:1.10.3720.10 282 541 3.3E-26 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_07690 26047047fa1a13f9cc3e2c0d71633574 235 SUPERFAMILY SSF50447 2 89 1.24E-15 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMK58_07690 26047047fa1a13f9cc3e2c0d71633574 235 Gene3D G3DSA:2.40.30.130 1 89 4.7E-19 T 11-10-2018 AMK58_07690 26047047fa1a13f9cc3e2c0d71633574 235 Pfam PF01411 tRNA synthetases class II (A) 14 93 6.9E-11 T 11-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 AMK58_07690 26047047fa1a13f9cc3e2c0d71633574 235 SUPERFAMILY SSF55186 90 231 4.84E-29 T 11-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 AMK58_07690 26047047fa1a13f9cc3e2c0d71633574 235 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 187 230 5.9E-11 T 11-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 AMK58_07690 26047047fa1a13f9cc3e2c0d71633574 235 SMART SM00863 187 230 1.2E-12 T 11-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 AMK58_07690 26047047fa1a13f9cc3e2c0d71633574 235 Gene3D G3DSA:3.30.980.10 90 235 3.3E-31 T 11-10-2018 AMK58_10345 548dc001470d42a452cc0f841e43aae5 68 ProSitePatterns PS00579 Ribosomal protein L29 signature. 39 53 - T 11-10-2018 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10345 548dc001470d42a452cc0f841e43aae5 68 SUPERFAMILY SSF46561 1 63 1.31E-23 T 11-10-2018 IPR036049 Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10345 548dc001470d42a452cc0f841e43aae5 68 Pfam PF00831 Ribosomal L29 protein 5 60 1.1E-26 T 11-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10345 548dc001470d42a452cc0f841e43aae5 68 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 60 4.5E-25 T 11-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10345 548dc001470d42a452cc0f841e43aae5 68 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 18.719 T 11-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10345 548dc001470d42a452cc0f841e43aae5 68 Gene3D G3DSA:1.10.287.310 1 62 5.3E-28 T 11-10-2018 AMK58_04945 dd0d1ed82a65d2d4034f1ebf79323bb4 585 Gene3D G3DSA:1.20.1560.10 25 330 1.0E-29 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMK58_04945 dd0d1ed82a65d2d4034f1ebf79323bb4 585 ProSitePatterns PS00211 ABC transporters family signature. 482 496 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_04945 dd0d1ed82a65d2d4034f1ebf79323bb4 585 SUPERFAMILY SSF52540 336 570 1.45E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_04945 dd0d1ed82a65d2d4034f1ebf79323bb4 585 Gene3D G3DSA:3.40.50.300 343 581 4.9E-66 T 11-10-2018 AMK58_04945 dd0d1ed82a65d2d4034f1ebf79323bb4 585 TIGRFAM TIGR01842 type_I_sec_PrtD: type I secretion system ATPase 35 570 1.8E-177 T 11-10-2018 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 AMK58_04945 dd0d1ed82a65d2d4034f1ebf79323bb4 585 SMART SM00382 371 557 8.0E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_04945 dd0d1ed82a65d2d4034f1ebf79323bb4 585 Pfam PF00664 ABC transporter transmembrane region 40 295 1.9E-11 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMK58_04945 dd0d1ed82a65d2d4034f1ebf79323bb4 585 SUPERFAMILY SSF90123 30 334 4.05E-37 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMK58_04945 dd0d1ed82a65d2d4034f1ebf79323bb4 585 Pfam PF00005 ABC transporter 362 509 7.0E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_16015 af5533e3474b84c35d8f0bab729e8ecc 609 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 5 592 3.8E-184 T 11-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 AMK58_16015 af5533e3474b84c35d8f0bab729e8ecc 609 Pfam PF02938 GAD domain 322 409 4.7E-17 T 11-10-2018 IPR029351 GAD domain Reactome: R-HSA-379726 AMK58_16015 af5533e3474b84c35d8f0bab729e8ecc 609 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 4 594 30.523 T 11-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 AMK58_16015 af5533e3474b84c35d8f0bab729e8ecc 609 SUPERFAMILY SSF55681 114 593 5.57E-95 T 11-10-2018 AMK58_16015 af5533e3474b84c35d8f0bab729e8ecc 609 Pfam PF00152 tRNA synthetases class II (D, K and N) 122 567 1.1E-91 T 11-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMK58_16015 af5533e3474b84c35d8f0bab729e8ecc 609 Gene3D G3DSA:3.30.1360.30 284 429 1.2E-162 T 11-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 AMK58_16015 af5533e3474b84c35d8f0bab729e8ecc 609 Gene3D G3DSA:2.40.50.140 1 105 5.4E-35 T 11-10-2018 AMK58_16015 af5533e3474b84c35d8f0bab729e8ecc 609 Gene3D G3DSA:3.30.930.10 120 592 1.2E-162 T 11-10-2018 AMK58_16015 af5533e3474b84c35d8f0bab729e8ecc 609 SUPERFAMILY SSF50249 4 107 2.29E-29 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_16015 af5533e3474b84c35d8f0bab729e8ecc 609 Pfam PF01336 OB-fold nucleic acid binding domain 21 102 3.5E-14 T 11-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 AMK58_16015 af5533e3474b84c35d8f0bab729e8ecc 609 SUPERFAMILY SSF55261 301 429 1.13E-33 T 11-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 AMK58_16015 af5533e3474b84c35d8f0bab729e8ecc 609 PRINTS PR01042 Aspartyl-tRNA synthetase signature 528 542 9.3E-21 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMK58_16015 af5533e3474b84c35d8f0bab729e8ecc 609 PRINTS PR01042 Aspartyl-tRNA synthetase signature 194 206 9.3E-21 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMK58_16015 af5533e3474b84c35d8f0bab729e8ecc 609 PRINTS PR01042 Aspartyl-tRNA synthetase signature 484 500 9.3E-21 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMK58_16015 af5533e3474b84c35d8f0bab729e8ecc 609 PRINTS PR01042 Aspartyl-tRNA synthetase signature 211 224 9.3E-21 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMK58_17955 6b508403a45d8821f4a3e974d80e007e 309 Gene3D G3DSA:3.50.50.60 11 298 1.0E-83 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_17955 6b508403a45d8821f4a3e974d80e007e 309 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 11 291 2.6E-28 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMK58_17955 6b508403a45d8821f4a3e974d80e007e 309 Gene3D G3DSA:3.50.50.60 122 235 1.0E-83 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_17955 6b508403a45d8821f4a3e974d80e007e 309 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 151 169 3.0E-23 T 11-10-2018 AMK58_17955 6b508403a45d8821f4a3e974d80e007e 309 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 108 126 3.0E-23 T 11-10-2018 AMK58_17955 6b508403a45d8821f4a3e974d80e007e 309 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 12 31 3.0E-23 T 11-10-2018 AMK58_17955 6b508403a45d8821f4a3e974d80e007e 309 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 256 278 3.0E-23 T 11-10-2018 AMK58_17955 6b508403a45d8821f4a3e974d80e007e 309 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 229 245 3.0E-23 T 11-10-2018 AMK58_17955 6b508403a45d8821f4a3e974d80e007e 309 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 63 73 1.3E-29 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMK58_17955 6b508403a45d8821f4a3e974d80e007e 309 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 11 33 1.3E-29 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMK58_17955 6b508403a45d8821f4a3e974d80e007e 309 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 109 117 1.3E-29 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMK58_17955 6b508403a45d8821f4a3e974d80e007e 309 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 231 252 1.3E-29 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMK58_17955 6b508403a45d8821f4a3e974d80e007e 309 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 266 284 1.3E-29 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMK58_17955 6b508403a45d8821f4a3e974d80e007e 309 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 132 144 1.3E-29 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMK58_17955 6b508403a45d8821f4a3e974d80e007e 309 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 147 171 1.3E-29 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMK58_17955 6b508403a45d8821f4a3e974d80e007e 309 SUPERFAMILY SSF51905 7 304 3.69E-44 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_11530 48f03a2f77362db8471540833eca001d 457 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 3 456 3.5E-157 T 11-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 AMK58_11530 48f03a2f77362db8471540833eca001d 457 Pfam PF09190 DALR domain 341 397 4.7E-16 T 11-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 AMK58_11530 48f03a2f77362db8471540833eca001d 457 SUPERFAMILY SSF52374 4 312 2.55E-93 T 11-10-2018 AMK58_11530 48f03a2f77362db8471540833eca001d 457 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 26 37 1.6E-31 T 11-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AMK58_11530 48f03a2f77362db8471540833eca001d 457 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 62 71 1.6E-31 T 11-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AMK58_11530 48f03a2f77362db8471540833eca001d 457 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 222 243 1.6E-31 T 11-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AMK58_11530 48f03a2f77362db8471540833eca001d 457 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 191 209 1.6E-31 T 11-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AMK58_11530 48f03a2f77362db8471540833eca001d 457 Gene3D G3DSA:1.20.120.640 307 457 3.2E-40 T 11-10-2018 AMK58_11530 48f03a2f77362db8471540833eca001d 457 Gene3D G3DSA:3.40.50.620 1 306 5.2E-127 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_11530 48f03a2f77362db8471540833eca001d 457 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 3 457 38.53 T 11-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 AMK58_11530 48f03a2f77362db8471540833eca001d 457 SMART SM00840 338 397 2.7E-19 T 11-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 AMK58_11530 48f03a2f77362db8471540833eca001d 457 SUPERFAMILY SSF47323 317 456 1.31E-33 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMK58_11530 48f03a2f77362db8471540833eca001d 457 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 16 314 1.2E-121 T 11-10-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 AMK58_02565 c6c2e1733f68b8e8c3dcf5a346d6ad50 291 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 4 288 1.7E-139 T 11-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMK58_02565 c6c2e1733f68b8e8c3dcf5a346d6ad50 291 Gene3D G3DSA:3.40.50.720 2 123 5.6E-54 T 11-10-2018 AMK58_02565 c6c2e1733f68b8e8c3dcf5a346d6ad50 291 SMART SM00881 4 100 8.8E-38 T 11-10-2018 IPR003781 CoA-binding GO:0048037 AMK58_02565 c6c2e1733f68b8e8c3dcf5a346d6ad50 291 SUPERFAMILY SSF51735 1 122 8.11E-46 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_02565 c6c2e1733f68b8e8c3dcf5a346d6ad50 291 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 152 181 - T 11-10-2018 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site AMK58_02565 c6c2e1733f68b8e8c3dcf5a346d6ad50 291 Pfam PF00549 CoA-ligase 151 265 4.1E-18 T 11-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMK58_02565 c6c2e1733f68b8e8c3dcf5a346d6ad50 291 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 237 250 - T 11-10-2018 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site AMK58_02565 c6c2e1733f68b8e8c3dcf5a346d6ad50 291 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 289 42.715 T 11-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMK58_02565 c6c2e1733f68b8e8c3dcf5a346d6ad50 291 Pfam PF02629 CoA binding domain 6 99 1.8E-32 T 11-10-2018 IPR003781 CoA-binding GO:0048037 AMK58_02565 c6c2e1733f68b8e8c3dcf5a346d6ad50 291 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 3.4E-37 T 11-10-2018 AMK58_02565 c6c2e1733f68b8e8c3dcf5a346d6ad50 291 PRINTS PR01798 Succinyl-CoA synthase signature 177 195 3.4E-37 T 11-10-2018 AMK58_02565 c6c2e1733f68b8e8c3dcf5a346d6ad50 291 PRINTS PR01798 Succinyl-CoA synthase signature 208 221 3.4E-37 T 11-10-2018 AMK58_02565 c6c2e1733f68b8e8c3dcf5a346d6ad50 291 PRINTS PR01798 Succinyl-CoA synthase signature 241 258 3.4E-37 T 11-10-2018 AMK58_02565 c6c2e1733f68b8e8c3dcf5a346d6ad50 291 SUPERFAMILY SSF52210 123 288 6.02E-52 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMK58_02565 c6c2e1733f68b8e8c3dcf5a346d6ad50 291 Gene3D G3DSA:3.40.50.261 124 290 9.7E-71 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMK58_02565 c6c2e1733f68b8e8c3dcf5a346d6ad50 291 PIRSF PIRSF001553 1 291 1.0E-132 T 11-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMK58_10955 69bfc83a834e68c4af08499e374e5517 951 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 59 70 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMK58_10955 69bfc83a834e68c4af08499e374e5517 951 SUPERFAMILY SSF50677 207 419 2.35E-47 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AMK58_10955 69bfc83a834e68c4af08499e374e5517 951 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 16 861 4.7E-260 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AMK58_10955 69bfc83a834e68c4af08499e374e5517 951 Pfam PF06827 Zinc finger found in FPG and IleRS 916 942 1.4E-6 T 11-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 AMK58_10955 69bfc83a834e68c4af08499e374e5517 951 Pfam PF08264 Anticodon-binding domain of tRNA 700 855 2.7E-21 T 11-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 AMK58_10955 69bfc83a834e68c4af08499e374e5517 951 SUPERFAMILY SSF52374 5 662 2.62E-133 T 11-10-2018 AMK58_10955 69bfc83a834e68c4af08499e374e5517 951 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 29 656 1.6E-192 T 11-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMK58_10955 69bfc83a834e68c4af08499e374e5517 951 Gene3D G3DSA:3.40.50.620 26 645 2.8E-230 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_10955 69bfc83a834e68c4af08499e374e5517 951 Gene3D G3DSA:1.10.730.20 656 947 5.2E-84 T 11-10-2018 AMK58_10955 69bfc83a834e68c4af08499e374e5517 951 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 3 946 20.269 T 11-10-2018 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 AMK58_10955 69bfc83a834e68c4af08499e374e5517 951 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 543 556 4.9E-30 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AMK58_10955 69bfc83a834e68c4af08499e374e5517 951 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 52 63 4.9E-30 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AMK58_10955 69bfc83a834e68c4af08499e374e5517 951 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 417 432 4.9E-30 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AMK58_10955 69bfc83a834e68c4af08499e374e5517 951 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 577 586 4.9E-30 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AMK58_10955 69bfc83a834e68c4af08499e374e5517 951 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 234 257 4.9E-30 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AMK58_10955 69bfc83a834e68c4af08499e374e5517 951 Gene3D G3DSA:3.90.740.10 199 424 2.8E-230 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AMK58_10955 69bfc83a834e68c4af08499e374e5517 951 SUPERFAMILY SSF47323 668 946 2.4E-62 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMK58_17325 dc2319668ae0133dc50b99549baf2380 365 SUPERFAMILY SSF50891 189 303 3.41E-10 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily AMK58_17325 dc2319668ae0133dc50b99549baf2380 365 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 32 296 4.2E-79 T 11-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B AMK58_17325 dc2319668ae0133dc50b99549baf2380 365 Gene3D G3DSA:2.40.100.10 186 323 7.0E-48 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily AMK58_17325 dc2319668ae0133dc50b99549baf2380 365 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 10 316 2.3E-82 T 11-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B AMK58_17325 dc2319668ae0133dc50b99549baf2380 365 SMART SM00797 31 313 3.5E-107 T 11-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B AMK58_11120 d4c93d2fa6d2fafca15b30f6dfcfe692 557 Pfam PF00535 Glycosyl transferase family 2 6 123 2.8E-16 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMK58_11120 d4c93d2fa6d2fafca15b30f6dfcfe692 557 Gene3D G3DSA:3.90.550.10 2 246 4.2E-23 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_11120 d4c93d2fa6d2fafca15b30f6dfcfe692 557 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 350 545 2.7E-12 T 11-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 AMK58_11120 d4c93d2fa6d2fafca15b30f6dfcfe692 557 SUPERFAMILY SSF53448 5 232 1.69E-27 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_10330 c0fd1130f80c76f64c7753418fa7c761 105 SMART SM00739 4 31 1.3E-4 T 11-10-2018 IPR005824 KOW AMK58_10330 c0fd1130f80c76f64c7753418fa7c761 105 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 40 103 2.7E-29 T 11-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_10330 c0fd1130f80c76f64c7753418fa7c761 105 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 3 97 21.749 T 11-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_10330 c0fd1130f80c76f64c7753418fa7c761 105 SUPERFAMILY SSF50104 4 102 1.54E-35 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily AMK58_10330 c0fd1130f80c76f64c7753418fa7c761 105 Pfam PF00467 KOW motif 9 37 2.7E-7 T 11-10-2018 IPR005824 KOW AMK58_10330 c0fd1130f80c76f64c7753418fa7c761 105 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 3 103 7.5E-39 T 11-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_10330 c0fd1130f80c76f64c7753418fa7c761 105 Gene3D G3DSA:2.30.30.30 2 104 5.0E-40 T 11-10-2018 IPR014722 Ribosomal protein L2, domain 2 AMK58_25265 1ca31fc78d12ba4a12f90f153601784e 259 Pfam PF00813 FliP family 57 252 1.9E-78 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AMK58_25265 1ca31fc78d12ba4a12f90f153601784e 259 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 185 200 - T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AMK58_25265 1ca31fc78d12ba4a12f90f153601784e 259 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 53 62 6.3E-20 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AMK58_25265 1ca31fc78d12ba4a12f90f153601784e 259 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 178 190 6.3E-20 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AMK58_25265 1ca31fc78d12ba4a12f90f153601784e 259 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 246 256 6.3E-20 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AMK58_25265 1ca31fc78d12ba4a12f90f153601784e 259 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 125 139 6.3E-20 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AMK58_25265 1ca31fc78d12ba4a12f90f153601784e 259 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 153 165 6.3E-20 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AMK58_25265 1ca31fc78d12ba4a12f90f153601784e 259 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 113 125 6.3E-20 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AMK58_25265 1ca31fc78d12ba4a12f90f153601784e 259 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 94 113 3.7E-65 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AMK58_25265 1ca31fc78d12ba4a12f90f153601784e 259 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 185 205 3.7E-65 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AMK58_25265 1ca31fc78d12ba4a12f90f153601784e 259 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 74 94 3.7E-65 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AMK58_25265 1ca31fc78d12ba4a12f90f153601784e 259 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 55 74 3.7E-65 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AMK58_25265 1ca31fc78d12ba4a12f90f153601784e 259 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 230 255 3.7E-65 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AMK58_25265 1ca31fc78d12ba4a12f90f153601784e 259 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 206 227 3.7E-65 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AMK58_25265 1ca31fc78d12ba4a12f90f153601784e 259 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 57 256 5.2E-85 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AMK58_24195 4d5387485b69d9c04d570ed8667eed3f 1087 PRINTS PR00702 Acriflavin resistance protein family signature 389 413 1.6E-78 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_24195 4d5387485b69d9c04d570ed8667eed3f 1087 PRINTS PR00702 Acriflavin resistance protein family signature 442 465 1.6E-78 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_24195 4d5387485b69d9c04d570ed8667eed3f 1087 PRINTS PR00702 Acriflavin resistance protein family signature 467 490 1.6E-78 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_24195 4d5387485b69d9c04d570ed8667eed3f 1087 PRINTS PR00702 Acriflavin resistance protein family signature 14 38 1.6E-78 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_24195 4d5387485b69d9c04d570ed8667eed3f 1087 PRINTS PR00702 Acriflavin resistance protein family signature 334 357 1.6E-78 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_24195 4d5387485b69d9c04d570ed8667eed3f 1087 PRINTS PR00702 Acriflavin resistance protein family signature 42 60 1.6E-78 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_24195 4d5387485b69d9c04d570ed8667eed3f 1087 PRINTS PR00702 Acriflavin resistance protein family signature 552 569 1.6E-78 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_24195 4d5387485b69d9c04d570ed8667eed3f 1087 PRINTS PR00702 Acriflavin resistance protein family signature 361 382 1.6E-78 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_24195 4d5387485b69d9c04d570ed8667eed3f 1087 PRINTS PR00702 Acriflavin resistance protein family signature 615 629 1.6E-78 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_24195 4d5387485b69d9c04d570ed8667eed3f 1087 SUPERFAMILY SSF82693 671 893 1.03E-9 T 11-10-2018 AMK58_24195 4d5387485b69d9c04d570ed8667eed3f 1087 Gene3D G3DSA:3.30.2090.10 183 273 7.2E-215 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_24195 4d5387485b69d9c04d570ed8667eed3f 1087 SUPERFAMILY SSF82866 295 495 1.2E-48 T 11-10-2018 AMK58_24195 4d5387485b69d9c04d570ed8667eed3f 1087 Gene3D G3DSA:1.20.1640.10 907 1064 2.4E-67 T 11-10-2018 AMK58_24195 4d5387485b69d9c04d570ed8667eed3f 1087 Gene3D G3DSA:1.20.1640.10 513 566 7.2E-215 T 11-10-2018 AMK58_24195 4d5387485b69d9c04d570ed8667eed3f 1087 Gene3D G3DSA:3.30.70.1430 44 808 7.2E-215 T 11-10-2018 AMK58_24195 4d5387485b69d9c04d570ed8667eed3f 1087 Gene3D G3DSA:3.30.2090.10 830 848 2.4E-67 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_24195 4d5387485b69d9c04d570ed8667eed3f 1087 Gene3D G3DSA:3.30.2090.10 711 800 7.2E-215 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_24195 4d5387485b69d9c04d570ed8667eed3f 1087 Gene3D G3DSA:3.30.70.1440 660 820 7.2E-215 T 11-10-2018 AMK58_24195 4d5387485b69d9c04d570ed8667eed3f 1087 Pfam PF00873 AcrB/AcrD/AcrF family 10 1067 0.0 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_24195 4d5387485b69d9c04d570ed8667eed3f 1087 SUPERFAMILY SSF82866 871 1069 4.32E-41 T 11-10-2018 AMK58_24195 4d5387485b69d9c04d570ed8667eed3f 1087 SUPERFAMILY SSF82714 187 270 5.89E-18 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_24195 4d5387485b69d9c04d570ed8667eed3f 1087 Gene3D G3DSA:3.30.70.1440 857 906 2.4E-67 T 11-10-2018 AMK58_24195 4d5387485b69d9c04d570ed8667eed3f 1087 Gene3D G3DSA:3.30.70.1320 139 330 7.2E-215 T 11-10-2018 AMK58_24195 4d5387485b69d9c04d570ed8667eed3f 1087 SUPERFAMILY SSF82714 714 784 3.66E-13 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_24195 4d5387485b69d9c04d570ed8667eed3f 1087 Gene3D G3DSA:3.30.70.1430 567 659 7.2E-215 T 11-10-2018 AMK58_24195 4d5387485b69d9c04d570ed8667eed3f 1087 SUPERFAMILY SSF82693 565 658 1.41E-14 T 11-10-2018 AMK58_24195 4d5387485b69d9c04d570ed8667eed3f 1087 SUPERFAMILY SSF82693 44 138 1.01E-22 T 11-10-2018 AMK58_24195 4d5387485b69d9c04d570ed8667eed3f 1087 Gene3D G3DSA:1.20.1640.10 14 512 7.2E-215 T 11-10-2018 AMK58_24195 4d5387485b69d9c04d570ed8667eed3f 1087 SUPERFAMILY SSF82693 140 328 7.15E-22 T 11-10-2018 AMK58_03615 2e1d119bf2b195ca6494898e17ec49a6 410 SMART SM00044 187 386 1.3E-4 T 11-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMK58_03615 2e1d119bf2b195ca6494898e17ec49a6 410 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 225 400 3.0E-17 T 11-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMK58_03615 2e1d119bf2b195ca6494898e17ec49a6 410 SUPERFAMILY SSF55073 219 404 8.16E-44 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_03615 2e1d119bf2b195ca6494898e17ec49a6 410 Gene3D G3DSA:3.30.70.1230 218 407 6.4E-41 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_23295 e25d0baba87c1f36ba8903965b1b5bb6 398 Pfam PF01522 Polysaccharide deacetylase 204 311 4.4E-30 T 11-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMK58_23295 e25d0baba87c1f36ba8903965b1b5bb6 398 SUPERFAMILY SSF88713 202 384 2.08E-56 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMK58_23295 e25d0baba87c1f36ba8903965b1b5bb6 398 Gene3D G3DSA:3.20.20.370 195 390 4.2E-61 T 11-10-2018 AMK58_16605 ca2e80b300d138f5814a455395185022 183 TIGRFAM TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family 20 172 5.7E-58 T 11-10-2018 IPR006001 Carbohydrate kinase, thermoresistant glucokinase GO:0005975|GO:0016301 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530 AMK58_16605 ca2e80b300d138f5814a455395185022 183 Pfam PF01202 Shikimate kinase 27 174 1.4E-11 T 11-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 AMK58_16605 ca2e80b300d138f5814a455395185022 183 Gene3D G3DSA:3.40.50.300 17 182 1.1E-62 T 11-10-2018 AMK58_16605 ca2e80b300d138f5814a455395185022 183 SUPERFAMILY SSF52540 20 179 3.41E-24 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_14345 7c1fe7ab4e34d88312413f3a787fb087 545 Pfam PF00672 HAMP domain 319 368 9.2E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_14345 7c1fe7ab4e34d88312413f3a787fb087 545 Gene3D G3DSA:3.30.450.20 47 189 7.9E-19 T 11-10-2018 AMK58_14345 7c1fe7ab4e34d88312413f3a787fb087 545 Gene3D G3DSA:3.30.70.270 379 544 3.1E-58 T 11-10-2018 AMK58_14345 7c1fe7ab4e34d88312413f3a787fb087 545 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 382 537 5.1E-42 T 11-10-2018 IPR000160 GGDEF domain AMK58_14345 7c1fe7ab4e34d88312413f3a787fb087 545 Pfam PF00990 Diguanylate cyclase, GGDEF domain 385 537 2.7E-47 T 11-10-2018 IPR000160 GGDEF domain AMK58_14345 7c1fe7ab4e34d88312413f3a787fb087 545 SUPERFAMILY SSF55073 390 538 6.36E-50 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_14345 7c1fe7ab4e34d88312413f3a787fb087 545 Pfam PF02743 Cache domain 51 281 2.6E-23 T 11-10-2018 IPR033479 Double Cache domain 1 AMK58_14345 7c1fe7ab4e34d88312413f3a787fb087 545 SMART SM00304 319 372 1.8E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_14345 7c1fe7ab4e34d88312413f3a787fb087 545 Gene3D G3DSA:1.20.1480.50 284 377 1.0E-8 T 11-10-2018 AMK58_14345 7c1fe7ab4e34d88312413f3a787fb087 545 SUPERFAMILY SSF158472 319 369 3.14E-8 T 11-10-2018 AMK58_14345 7c1fe7ab4e34d88312413f3a787fb087 545 SMART SM00267 374 544 1.4E-60 T 11-10-2018 IPR000160 GGDEF domain AMK58_28875 7db1eb488471f21fc90a0c79c0853083 342 Gene3D G3DSA:2.150.10.10 238 342 1.4E-15 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_28875 7db1eb488471f21fc90a0c79c0853083 342 PRINTS PR00313 NodO calcium binding signature 124 135 8.7E-12 T 11-10-2018 AMK58_28875 7db1eb488471f21fc90a0c79c0853083 342 PRINTS PR00313 NodO calcium binding signature 255 263 8.7E-12 T 11-10-2018 AMK58_28875 7db1eb488471f21fc90a0c79c0853083 342 PRINTS PR00313 NodO calcium binding signature 264 273 8.7E-12 T 11-10-2018 AMK58_28875 7db1eb488471f21fc90a0c79c0853083 342 PRINTS PR00313 NodO calcium binding signature 225 233 8.7E-12 T 11-10-2018 AMK58_28875 7db1eb488471f21fc90a0c79c0853083 342 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 251 269 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_28875 7db1eb488471f21fc90a0c79c0853083 342 SUPERFAMILY SSF51120 73 170 2.88E-9 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_28875 7db1eb488471f21fc90a0c79c0853083 342 Gene3D G3DSA:2.150.10.10 182 237 3.2E-8 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_28875 7db1eb488471f21fc90a0c79c0853083 342 SUPERFAMILY SSF51120 165 333 2.75E-26 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_28875 7db1eb488471f21fc90a0c79c0853083 342 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 225 235 1.5 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_28875 7db1eb488471f21fc90a0c79c0853083 342 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 164 175 31.0 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_28875 7db1eb488471f21fc90a0c79c0853083 342 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 254 271 5.0E-4 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_28875 7db1eb488471f21fc90a0c79c0853083 342 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 190 205 7.6 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_28875 7db1eb488471f21fc90a0c79c0853083 342 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 138 152 0.45 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_28875 7db1eb488471f21fc90a0c79c0853083 342 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 124 134 2.6 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_28875 7db1eb488471f21fc90a0c79c0853083 342 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 209 223 0.023 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_10515 36b826779b7868ac341565db5258f4da 409 SUPERFAMILY SSF53822 36 393 5.72E-89 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMK58_10515 36b826779b7868ac341565db5258f4da 409 Gene3D G3DSA:3.40.50.2300 156 381 2.7E-132 T 11-10-2018 AMK58_10515 36b826779b7868ac341565db5258f4da 409 Gene3D G3DSA:3.40.50.2300 56 369 2.7E-132 T 11-10-2018 AMK58_10515 36b826779b7868ac341565db5258f4da 409 Pfam PF13458 Periplasmic binding protein 36 381 3.0E-74 T 11-10-2018 IPR028081 Leucine-binding protein domain AMK58_02765 ab4091778e91637528fa62d6ef259d07 471 Gene3D G3DSA:2.60.120.10 384 466 1.3E-11 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_02765 ab4091778e91637528fa62d6ef259d07 471 Gene3D G3DSA:1.20.910.10 118 359 2.4E-21 T 11-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 AMK58_02765 ab4091778e91637528fa62d6ef259d07 471 Pfam PF14518 Iron-containing redox enzyme 179 335 1.1E-30 T 11-10-2018 AMK58_02765 ab4091778e91637528fa62d6ef259d07 471 Pfam PF07883 Cupin domain 398 455 1.0E-8 T 11-10-2018 IPR013096 Cupin 2, conserved barrel AMK58_02765 ab4091778e91637528fa62d6ef259d07 471 SUPERFAMILY SSF48613 207 328 2.22E-6 T 11-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 AMK58_02765 ab4091778e91637528fa62d6ef259d07 471 SUPERFAMILY SSF51182 395 455 1.27E-10 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily AMK58_02765 ab4091778e91637528fa62d6ef259d07 471 SMART SM01236 209 314 1.0E-23 T 11-10-2018 AMK58_19070 776eee9a96fd4e72b37db8e3ec66a886 320 Gene3D G3DSA:3.40.50.1370 15 308 4.0E-93 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AMK58_19070 776eee9a96fd4e72b37db8e3ec66a886 320 PRINTS PR00101 Aspartate carbamoyltransferase signature 268 273 1.2E-29 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMK58_19070 776eee9a96fd4e72b37db8e3ec66a886 320 PRINTS PR00101 Aspartate carbamoyltransferase signature 143 160 1.2E-29 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMK58_19070 776eee9a96fd4e72b37db8e3ec66a886 320 PRINTS PR00101 Aspartate carbamoyltransferase signature 293 307 1.2E-29 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMK58_19070 776eee9a96fd4e72b37db8e3ec66a886 320 PRINTS PR00101 Aspartate carbamoyltransferase signature 50 72 1.2E-29 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMK58_19070 776eee9a96fd4e72b37db8e3ec66a886 320 PRINTS PR00101 Aspartate carbamoyltransferase signature 88 97 1.2E-29 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMK58_19070 776eee9a96fd4e72b37db8e3ec66a886 320 PRINTS PR00101 Aspartate carbamoyltransferase signature 227 236 1.2E-29 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMK58_19070 776eee9a96fd4e72b37db8e3ec66a886 320 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 164 310 2.5E-23 T 11-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 AMK58_19070 776eee9a96fd4e72b37db8e3ec66a886 320 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 14 312 2.6E-93 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMK58_19070 776eee9a96fd4e72b37db8e3ec66a886 320 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 264 273 1.9E-12 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMK58_19070 776eee9a96fd4e72b37db8e3ec66a886 320 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 60 79 1.9E-12 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMK58_19070 776eee9a96fd4e72b37db8e3ec66a886 320 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 144 155 1.9E-12 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMK58_19070 776eee9a96fd4e72b37db8e3ec66a886 320 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 14 156 3.4E-42 T 11-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 AMK58_19070 776eee9a96fd4e72b37db8e3ec66a886 320 Gene3D G3DSA:3.40.50.1370 144 299 4.0E-93 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AMK58_19070 776eee9a96fd4e72b37db8e3ec66a886 320 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 60 67 - T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMK58_19070 776eee9a96fd4e72b37db8e3ec66a886 320 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 13 314 39.965 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMK58_19070 776eee9a96fd4e72b37db8e3ec66a886 320 SUPERFAMILY SSF53671 11 313 2.1E-97 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AMK58_18125 debcd084bf12a88f44d32b002cfd0292 329 SMART SM00382 32 231 3.4E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_18125 debcd084bf12a88f44d32b002cfd0292 329 SUPERFAMILY SSF52540 3 252 2.9E-65 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_18125 debcd084bf12a88f44d32b002cfd0292 329 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 231 315 4.9E-22 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMK58_18125 debcd084bf12a88f44d32b002cfd0292 329 Pfam PF00005 ABC transporter 24 181 4.5E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_18125 debcd084bf12a88f44d32b002cfd0292 329 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 234 297 4.4E-18 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMK58_18125 debcd084bf12a88f44d32b002cfd0292 329 Gene3D G3DSA:3.40.50.300 2 320 5.3E-94 T 11-10-2018 AMK58_14260 23030d53aea1ea006c397627948b50c0 294 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 243 285 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMK58_14260 23030d53aea1ea006c397627948b50c0 294 SMART SM00342 206 289 3.5E-25 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMK58_14260 23030d53aea1ea006c397627948b50c0 294 Gene3D G3DSA:1.10.10.60 243 293 4.5E-14 T 11-10-2018 AMK58_14260 23030d53aea1ea006c397627948b50c0 294 SUPERFAMILY SSF46689 190 240 1.21E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_14260 23030d53aea1ea006c397627948b50c0 294 SUPERFAMILY SSF46689 242 291 1.03E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_14260 23030d53aea1ea006c397627948b50c0 294 Gene3D G3DSA:1.10.10.60 189 242 3.6E-14 T 11-10-2018 AMK58_14260 23030d53aea1ea006c397627948b50c0 294 Pfam PF12833 Helix-turn-helix domain 212 290 1.6E-20 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMK58_26500 a1c55f8570a7e61259d68b490e44c63f 425 Pfam PF00113 Enolase, C-terminal TIM barrel domain 141 423 3.4E-129 T 11-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_26500 a1c55f8570a7e61259d68b490e44c63f 425 Hamap MF_00318 Enolase [eno]. 2 411 44.641 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_26500 a1c55f8570a7e61259d68b490e44c63f 425 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 421 4.0E-205 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_26500 a1c55f8570a7e61259d68b490e44c63f 425 Gene3D G3DSA:3.30.390.10 1 127 1.3E-56 T 11-10-2018 IPR029017 Enolase-like, N-terminal AMK58_26500 a1c55f8570a7e61259d68b490e44c63f 425 SUPERFAMILY SSF54826 3 138 8.17E-55 T 11-10-2018 AMK58_26500 a1c55f8570a7e61259d68b490e44c63f 425 PRINTS PR00148 Enolase signature 37 51 3.1E-48 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_26500 a1c55f8570a7e61259d68b490e44c63f 425 PRINTS PR00148 Enolase signature 363 380 3.1E-48 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_26500 a1c55f8570a7e61259d68b490e44c63f 425 PRINTS PR00148 Enolase signature 334 348 3.1E-48 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_26500 a1c55f8570a7e61259d68b490e44c63f 425 PRINTS PR00148 Enolase signature 107 123 3.1E-48 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_26500 a1c55f8570a7e61259d68b490e44c63f 425 PRINTS PR00148 Enolase signature 161 174 3.1E-48 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_26500 a1c55f8570a7e61259d68b490e44c63f 425 PRINTS PR00148 Enolase signature 311 322 3.1E-48 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_26500 a1c55f8570a7e61259d68b490e44c63f 425 PIRSF PIRSF001400 1 424 9.1E-185 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_26500 a1c55f8570a7e61259d68b490e44c63f 425 SMART SM01193 4 134 8.8E-94 T 11-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_26500 a1c55f8570a7e61259d68b490e44c63f 425 Gene3D G3DSA:3.20.20.120 128 425 3.5E-129 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMK58_26500 a1c55f8570a7e61259d68b490e44c63f 425 SMART SM01192 139 425 4.6E-219 T 11-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_26500 a1c55f8570a7e61259d68b490e44c63f 425 ProSitePatterns PS00164 Enolase signature. 334 347 - T 11-10-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_26500 a1c55f8570a7e61259d68b490e44c63f 425 SUPERFAMILY SSF51604 141 422 1.41E-125 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMK58_26500 a1c55f8570a7e61259d68b490e44c63f 425 Pfam PF03952 Enolase, N-terminal domain 4 134 1.0E-58 T 11-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_12665 c3faada4d86e8de6fef093586f54d7c1 306 SMART SM00267 124 300 5.4E-68 T 11-10-2018 IPR000160 GGDEF domain AMK58_12665 c3faada4d86e8de6fef093586f54d7c1 306 Pfam PF00072 Response regulator receiver domain 8 118 4.6E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_12665 c3faada4d86e8de6fef093586f54d7c1 306 SUPERFAMILY SSF52172 5 129 6.83E-39 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_12665 c3faada4d86e8de6fef093586f54d7c1 306 SMART SM00448 6 118 5.0E-38 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_12665 c3faada4d86e8de6fef093586f54d7c1 306 Gene3D G3DSA:3.30.70.270 126 300 6.4E-61 T 11-10-2018 AMK58_12665 c3faada4d86e8de6fef093586f54d7c1 306 Pfam PF00990 Diguanylate cyclase, GGDEF domain 137 296 1.0E-50 T 11-10-2018 IPR000160 GGDEF domain AMK58_12665 c3faada4d86e8de6fef093586f54d7c1 306 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 132 297 4.4E-52 T 11-10-2018 IPR000160 GGDEF domain AMK58_12665 c3faada4d86e8de6fef093586f54d7c1 306 Gene3D G3DSA:3.40.50.2300 1 125 4.2E-36 T 11-10-2018 AMK58_12665 c3faada4d86e8de6fef093586f54d7c1 306 SUPERFAMILY SSF55073 140 298 3.14E-50 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_24485 49f722f215c74d156929a350b541566f 351 Gene3D G3DSA:1.10.287.470 93 166 8.9E-35 T 11-10-2018 AMK58_24485 49f722f215c74d156929a350b541566f 351 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 62 226 6.9E-12 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMK58_24485 49f722f215c74d156929a350b541566f 351 SUPERFAMILY SSF111369 53 199 1.44E-15 T 11-10-2018 AMK58_24485 49f722f215c74d156929a350b541566f 351 Gene3D G3DSA:2.40.50.100 59 204 8.9E-35 T 11-10-2018 AMK58_24485 49f722f215c74d156929a350b541566f 351 Gene3D G3DSA:2.40.420.20 37 346 8.9E-35 T 11-10-2018 AMK58_24485 49f722f215c74d156929a350b541566f 351 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 38 346 4.5E-35 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMK58_24485 49f722f215c74d156929a350b541566f 351 Gene3D G3DSA:2.40.30.170 44 286 8.9E-35 T 11-10-2018 AMK58_09175 562a9e35068dca9cda43265b9a152912 343 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 2.7E-19 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_09175 562a9e35068dca9cda43265b9a152912 343 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 2.7E-19 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_09175 562a9e35068dca9cda43265b9a152912 343 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 13 30 2.7E-19 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_09175 562a9e35068dca9cda43265b9a152912 343 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 88 99 2.7E-19 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_09175 562a9e35068dca9cda43265b9a152912 343 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 2.7E-19 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_09175 562a9e35068dca9cda43265b9a152912 343 SUPERFAMILY SSF51735 8 266 1.53E-59 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_09175 562a9e35068dca9cda43265b9a152912 343 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 12 207 6.7E-4 T 11-10-2018 AMK58_09175 562a9e35068dca9cda43265b9a152912 343 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 1.2E-5 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_09175 562a9e35068dca9cda43265b9a152912 343 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 1.2E-5 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_09175 562a9e35068dca9cda43265b9a152912 343 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 1.2E-5 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_09175 562a9e35068dca9cda43265b9a152912 343 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 148 176 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMK58_09175 562a9e35068dca9cda43265b9a152912 343 Pfam PF00106 short chain dehydrogenase 13 201 1.5E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_09175 562a9e35068dca9cda43265b9a152912 343 Gene3D G3DSA:3.40.50.720 4 268 4.2E-58 T 11-10-2018 AMK58_23985 2dc246ef317256475e0e44db1026b745 423 Gene3D G3DSA:3.40.190.10 137 410 9.2E-82 T 11-10-2018 AMK58_23985 2dc246ef317256475e0e44db1026b745 423 Pfam PF13416 Bacterial extracellular solute-binding protein 47 358 1.3E-26 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMK58_23985 2dc246ef317256475e0e44db1026b745 423 Gene3D G3DSA:3.40.190.10 52 369 9.2E-82 T 11-10-2018 AMK58_23985 2dc246ef317256475e0e44db1026b745 423 SUPERFAMILY SSF53850 25 397 6.79E-70 T 11-10-2018 AMK58_17425 7250bd12d4f882708c749d5f65d3c3e7 368 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 46 326 1.2E-60 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 AMK58_17425 7250bd12d4f882708c749d5f65d3c3e7 368 Gene3D G3DSA:3.40.190.170 39 342 9.5E-126 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily AMK58_17425 7250bd12d4f882708c749d5f65d3c3e7 368 SUPERFAMILY SSF53850 149 324 3.98E-5 T 11-10-2018 AMK58_17425 7250bd12d4f882708c749d5f65d3c3e7 368 Gene3D G3DSA:3.40.190.10 158 328 9.5E-126 T 11-10-2018 AMK58_17425 7250bd12d4f882708c749d5f65d3c3e7 368 PIRSF PIRSF039026 1 363 3.3E-124 T 11-10-2018 IPR026289 Solute binding protein, mannitol/chloroaromatic system-like AMK58_08980 8d76265592ecdfcc95ea5d98dc727be6 394 SUPERFAMILY SSF82689 123 218 1.26E-11 T 11-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 AMK58_08980 8d76265592ecdfcc95ea5d98dc727be6 394 Pfam PF00027 Cyclic nucleotide-binding domain 259 344 3.6E-21 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_08980 8d76265592ecdfcc95ea5d98dc727be6 394 SMART SM00100 240 357 2.3E-24 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_08980 8d76265592ecdfcc95ea5d98dc727be6 394 PRINTS PR00103 cAMP-dependent protein kinase signature 261 275 7.0E-6 T 11-10-2018 AMK58_08980 8d76265592ecdfcc95ea5d98dc727be6 394 PRINTS PR00103 cAMP-dependent protein kinase signature 317 328 7.0E-6 T 11-10-2018 AMK58_08980 8d76265592ecdfcc95ea5d98dc727be6 394 PRINTS PR00103 cAMP-dependent protein kinase signature 305 314 7.0E-6 T 11-10-2018 AMK58_08980 8d76265592ecdfcc95ea5d98dc727be6 394 SUPERFAMILY SSF51206 233 364 1.57E-31 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like AMK58_08980 8d76265592ecdfcc95ea5d98dc727be6 394 Gene3D G3DSA:3.30.70.100 121 212 6.7E-8 T 11-10-2018 AMK58_08980 8d76265592ecdfcc95ea5d98dc727be6 394 SUPERFAMILY SSF50182 50 117 2.71E-16 T 11-10-2018 IPR010920 LSM domain superfamily AMK58_08980 8d76265592ecdfcc95ea5d98dc727be6 394 Pfam PF00924 Mechanosensitive ion channel 9 207 1.6E-34 T 11-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 AMK58_08980 8d76265592ecdfcc95ea5d98dc727be6 394 Gene3D G3DSA:2.60.120.10 231 371 4.7E-36 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_08980 8d76265592ecdfcc95ea5d98dc727be6 394 Gene3D G3DSA:2.30.30.60 66 116 4.7E-13 T 11-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily AMK58_08980 8d76265592ecdfcc95ea5d98dc727be6 394 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 307 324 - T 11-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site AMK58_28450 214a92ecb158b7075ba5e602850cbc11 181 Gene3D G3DSA:1.10.357.10 6 180 6.6E-29 T 11-10-2018 AMK58_28450 214a92ecb158b7075ba5e602850cbc11 181 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 58 2.4E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_28450 214a92ecb158b7075ba5e602850cbc11 181 SUPERFAMILY SSF46689 5 82 8.72E-16 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_28450 214a92ecb158b7075ba5e602850cbc11 181 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 1.2E-5 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_28450 214a92ecb158b7075ba5e602850cbc11 181 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 1.2E-5 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_02510 66e1a9b22d35c7ea8747dbf33870e904 106 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 22 42 1.3E-7 T 11-10-2018 IPR019626 Stress-induced protein, KGG, repeat AMK58_02510 66e1a9b22d35c7ea8747dbf33870e904 106 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 48 67 2.7E-7 T 11-10-2018 IPR019626 Stress-induced protein, KGG, repeat AMK58_02510 66e1a9b22d35c7ea8747dbf33870e904 106 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 73 93 2.0E-7 T 11-10-2018 IPR019626 Stress-induced protein, KGG, repeat AMK58_10030 8077a64de89b8f4d42f8c554138d852f 841 SMART SM00388 469 535 1.2E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_10030 8077a64de89b8f4d42f8c554138d852f 841 Gene3D G3DSA:3.40.50.2300 715 841 2.4E-28 T 11-10-2018 AMK58_10030 8077a64de89b8f4d42f8c554138d852f 841 Gene3D G3DSA:3.30.450.20 90 213 8.7E-11 T 11-10-2018 AMK58_10030 8077a64de89b8f4d42f8c554138d852f 841 SUPERFAMILY SSF55874 525 699 4.58E-41 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_10030 8077a64de89b8f4d42f8c554138d852f 841 Gene3D G3DSA:3.30.450.20 330 460 3.3E-17 T 11-10-2018 AMK58_10030 8077a64de89b8f4d42f8c554138d852f 841 SUPERFAMILY SSF55785 96 204 1.41E-8 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_10030 8077a64de89b8f4d42f8c554138d852f 841 SUPERFAMILY SSF52172 721 838 3.7E-28 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_10030 8077a64de89b8f4d42f8c554138d852f 841 SMART SM00091 214 282 0.0071 T 11-10-2018 IPR000014 PAS domain AMK58_10030 8077a64de89b8f4d42f8c554138d852f 841 SMART SM00091 90 158 0.0022 T 11-10-2018 IPR000014 PAS domain AMK58_10030 8077a64de89b8f4d42f8c554138d852f 841 SMART SM00091 340 406 1.1E-9 T 11-10-2018 IPR000014 PAS domain AMK58_10030 8077a64de89b8f4d42f8c554138d852f 841 SMART SM00387 576 699 1.5E-32 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_10030 8077a64de89b8f4d42f8c554138d852f 841 Pfam PF00512 His Kinase A (phospho-acceptor) domain 470 533 2.4E-8 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_10030 8077a64de89b8f4d42f8c554138d852f 841 Gene3D G3DSA:1.10.287.130 461 534 1.5E-21 T 11-10-2018 AMK58_10030 8077a64de89b8f4d42f8c554138d852f 841 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 577 697 6.8E-23 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_10030 8077a64de89b8f4d42f8c554138d852f 841 SMART SM00448 721 833 8.3E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_10030 8077a64de89b8f4d42f8c554138d852f 841 SUPERFAMILY SSF55785 328 452 6.46E-17 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_10030 8077a64de89b8f4d42f8c554138d852f 841 Pfam PF00072 Response regulator receiver domain 723 833 3.0E-20 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_10030 8077a64de89b8f4d42f8c554138d852f 841 Pfam PF00989 PAS fold 95 177 5.5E-6 T 11-10-2018 IPR013767 PAS fold GO:0006355 AMK58_10030 8077a64de89b8f4d42f8c554138d852f 841 Gene3D G3DSA:3.30.450.20 214 329 3.5E-12 T 11-10-2018 AMK58_10030 8077a64de89b8f4d42f8c554138d852f 841 SUPERFAMILY SSF47384 462 533 1.61E-11 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_10030 8077a64de89b8f4d42f8c554138d852f 841 Gene3D G3DSA:3.30.565.10 538 706 3.7E-46 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_10030 8077a64de89b8f4d42f8c554138d852f 841 SUPERFAMILY SSF55785 199 326 1.68E-15 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_10030 8077a64de89b8f4d42f8c554138d852f 841 PRINTS PR00344 Bacterial sensor protein C-terminal signature 659 677 1.0E-19 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_10030 8077a64de89b8f4d42f8c554138d852f 841 PRINTS PR00344 Bacterial sensor protein C-terminal signature 628 642 1.0E-19 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_10030 8077a64de89b8f4d42f8c554138d852f 841 PRINTS PR00344 Bacterial sensor protein C-terminal signature 683 696 1.0E-19 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_10030 8077a64de89b8f4d42f8c554138d852f 841 PRINTS PR00344 Bacterial sensor protein C-terminal signature 646 656 1.0E-19 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_10030 8077a64de89b8f4d42f8c554138d852f 841 Pfam PF08448 PAS fold 346 455 8.6E-11 T 11-10-2018 IPR013656 PAS fold-4 AMK58_10030 8077a64de89b8f4d42f8c554138d852f 841 Pfam PF08448 PAS fold 221 329 5.2E-5 T 11-10-2018 IPR013656 PAS fold-4 AMK58_10030 8077a64de89b8f4d42f8c554138d852f 841 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 338 460 7.9E-13 T 11-10-2018 IPR000014 PAS domain AMK58_10030 8077a64de89b8f4d42f8c554138d852f 841 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 211 335 5.4E-8 T 11-10-2018 IPR000014 PAS domain AMK58_10030 8077a64de89b8f4d42f8c554138d852f 841 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 94 207 1.1E-5 T 11-10-2018 IPR000014 PAS domain AMK58_09560 2390de1948ae49db73033d954ac17410 331 Pfam PF01464 Transglycosylase SLT domain 179 277 1.2E-24 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 AMK58_09560 2390de1948ae49db73033d954ac17410 331 SUPERFAMILY SSF53955 169 294 7.88E-43 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily AMK58_09560 2390de1948ae49db73033d954ac17410 331 Gene3D G3DSA:1.10.530.10 165 295 4.9E-40 T 11-10-2018 AMK58_09560 2390de1948ae49db73033d954ac17410 331 SUPERFAMILY SSF81901 46 134 3.66E-16 T 11-10-2018 AMK58_09560 2390de1948ae49db73033d954ac17410 331 Gene3D G3DSA:1.25.40.10 32 149 2.6E-22 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_09560 2390de1948ae49db73033d954ac17410 331 Pfam PF08238 Sel1 repeat 59 94 9.5E-6 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_09560 2390de1948ae49db73033d954ac17410 331 Pfam PF08238 Sel1 repeat 95 131 9.5E-8 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_09560 2390de1948ae49db73033d954ac17410 331 SMART SM00671 59 94 2.2E-7 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_09560 2390de1948ae49db73033d954ac17410 331 SMART SM00671 95 131 1.5E-6 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_22890 ebcd9cdd3096d760a4cc33a1f082f872 239 SMART SM00448 2 112 2.6E-30 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_22890 ebcd9cdd3096d760a4cc33a1f082f872 239 Pfam PF04397 LytTr DNA-binding domain 143 236 7.2E-18 T 11-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 AMK58_22890 ebcd9cdd3096d760a4cc33a1f082f872 239 SUPERFAMILY SSF52172 1 122 1.04E-34 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_22890 ebcd9cdd3096d760a4cc33a1f082f872 239 Gene3D G3DSA:3.40.50.2300 1 129 1.6E-33 T 11-10-2018 AMK58_22890 ebcd9cdd3096d760a4cc33a1f082f872 239 Gene3D G3DSA:2.40.50.1020 138 237 1.7E-8 T 11-10-2018 AMK58_22890 ebcd9cdd3096d760a4cc33a1f082f872 239 SMART SM00850 142 237 3.5E-22 T 11-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 AMK58_22890 ebcd9cdd3096d760a4cc33a1f082f872 239 Pfam PF00072 Response regulator receiver domain 4 112 8.7E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_22275 34802e773687f81a63b368b9281c5ec9 277 Gene3D G3DSA:3.40.430.10 20 273 6.5E-40 T 11-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 AMK58_22275 34802e773687f81a63b368b9281c5ec9 277 Pfam PF01872 RibD C-terminal domain 36 252 6.4E-16 T 11-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 AMK58_22275 34802e773687f81a63b368b9281c5ec9 277 SUPERFAMILY SSF53597 35 253 1.01E-26 T 11-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 AMK58_17625 7a56015a75ee8c94619480871360b57b 167 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 20 159 2.2E-46 T 11-10-2018 IPR008136 CinA, C-terminal AMK58_17625 7a56015a75ee8c94619480871360b57b 167 Pfam PF02464 Competence-damaged protein 8 159 9.2E-56 T 11-10-2018 IPR008136 CinA, C-terminal AMK58_17625 7a56015a75ee8c94619480871360b57b 167 SUPERFAMILY SSF142433 4 159 5.1E-54 T 11-10-2018 IPR036653 CinA-like, C-terminal AMK58_17625 7a56015a75ee8c94619480871360b57b 167 Gene3D G3DSA:3.90.950.20 1 164 3.7E-60 T 11-10-2018 IPR036653 CinA-like, C-terminal AMK58_09640 de5c4e19e53b8b49d4c418beb84fa247 338 SMART SM00729 35 249 0.0018 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMK58_09640 de5c4e19e53b8b49d4c418beb84fa247 338 SUPERFAMILY SSF102114 33 315 5.89E-42 T 11-10-2018 AMK58_09640 de5c4e19e53b8b49d4c418beb84fa247 338 Pfam PF13186 Iron-sulfur cluster-binding domain 247 313 4.5E-15 T 11-10-2018 IPR023885 4Fe4S-binding SPASM domain AMK58_09640 de5c4e19e53b8b49d4c418beb84fa247 338 Pfam PF04055 Radical SAM superfamily 41 182 6.1E-15 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMK58_28750 607481c12758a4995dbf0738ce2e1be6 266 Pfam PF08241 Methyltransferase domain 41 134 2.7E-18 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 AMK58_28750 607481c12758a4995dbf0738ce2e1be6 266 Gene3D G3DSA:3.40.50.150 7 189 5.7E-27 T 11-10-2018 AMK58_28750 607481c12758a4995dbf0738ce2e1be6 266 SUPERFAMILY SSF53335 21 187 1.72E-30 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_29285 607481c12758a4995dbf0738ce2e1be6 266 Pfam PF08241 Methyltransferase domain 41 134 2.7E-18 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 AMK58_29285 607481c12758a4995dbf0738ce2e1be6 266 Gene3D G3DSA:3.40.50.150 7 189 5.7E-27 T 11-10-2018 AMK58_29285 607481c12758a4995dbf0738ce2e1be6 266 SUPERFAMILY SSF53335 21 187 1.72E-30 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_24285 091e82044631023814df1225d54542f0 236 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 53 69 2.4E-6 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_24285 091e82044631023814df1225d54542f0 236 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 39 53 2.4E-6 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_24285 091e82044631023814df1225d54542f0 236 SMART SM00345 21 79 1.6E-18 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_24285 091e82044631023814df1225d54542f0 236 SUPERFAMILY SSF48008 85 229 2.62E-18 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_24285 091e82044631023814df1225d54542f0 236 SMART SM00895 89 221 2.9E-14 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_24285 091e82044631023814df1225d54542f0 236 SUPERFAMILY SSF46785 20 83 7.5E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_24285 091e82044631023814df1225d54542f0 236 Gene3D G3DSA:1.10.10.10 3 79 3.6E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_24285 091e82044631023814df1225d54542f0 236 Pfam PF07729 FCD domain 89 220 1.2E-19 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_24285 091e82044631023814df1225d54542f0 236 Pfam PF00392 Bacterial regulatory proteins, gntR family 20 79 3.2E-18 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_24285 091e82044631023814df1225d54542f0 236 Gene3D G3DSA:1.20.120.530 80 225 1.4E-21 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_04615 f8c1b5e4fc8be7829bc88e07750114ef 154 Gene3D G3DSA:1.10.3100.20 2 154 3.2E-64 T 11-10-2018 AMK58_04615 f8c1b5e4fc8be7829bc88e07750114ef 154 TIGRFAM TIGR02935 TIGR02935: probable nitrogen fixation protein 14 152 1.8E-65 T 11-10-2018 IPR004952 Uncharacterised protein family UPF0460 AMK58_04615 f8c1b5e4fc8be7829bc88e07750114ef 154 Pfam PF03270 Protein of unknown function, DUF269 33 152 6.2E-54 T 11-10-2018 IPR004952 Uncharacterised protein family UPF0460 AMK58_04615 f8c1b5e4fc8be7829bc88e07750114ef 154 PIRSF PIRSF005788 1 154 5.9E-68 T 11-10-2018 IPR004952 Uncharacterised protein family UPF0460 AMK58_02390 a501fdd7832d6761094cdc13b500c30b 306 PIRSF PIRSF000410 18 306 6.6E-101 T 11-10-2018 IPR026024 Chemotaxis protein methyltransferase CheR AMK58_02390 a501fdd7832d6761094cdc13b500c30b 306 Pfam PF01739 CheR methyltransferase, SAM binding domain 103 300 4.5E-62 T 11-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal AMK58_02390 a501fdd7832d6761094cdc13b500c30b 306 Gene3D G3DSA:1.10.155.10 24 101 1.7E-23 T 11-10-2018 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily AMK58_02390 a501fdd7832d6761094cdc13b500c30b 306 Pfam PF03705 CheR methyltransferase, all-alpha domain 37 87 2.9E-14 T 11-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal AMK58_02390 a501fdd7832d6761094cdc13b500c30b 306 SUPERFAMILY SSF53335 103 304 3.58E-55 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_02390 a501fdd7832d6761094cdc13b500c30b 306 SUPERFAMILY SSF47757 28 102 3.4E-17 T 11-10-2018 AMK58_02390 a501fdd7832d6761094cdc13b500c30b 306 Gene3D G3DSA:3.40.50.150 102 306 7.4E-63 T 11-10-2018 AMK58_02390 a501fdd7832d6761094cdc13b500c30b 306 PRINTS PR00996 Glutamate methyltransferase family signature 246 260 1.2E-46 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMK58_02390 a501fdd7832d6761094cdc13b500c30b 306 PRINTS PR00996 Glutamate methyltransferase family signature 96 108 1.2E-46 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMK58_02390 a501fdd7832d6761094cdc13b500c30b 306 PRINTS PR00996 Glutamate methyltransferase family signature 175 191 1.2E-46 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMK58_02390 a501fdd7832d6761094cdc13b500c30b 306 PRINTS PR00996 Glutamate methyltransferase family signature 139 159 1.2E-46 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMK58_02390 a501fdd7832d6761094cdc13b500c30b 306 PRINTS PR00996 Glutamate methyltransferase family signature 265 288 1.2E-46 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMK58_02390 a501fdd7832d6761094cdc13b500c30b 306 PRINTS PR00996 Glutamate methyltransferase family signature 57 70 1.2E-46 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMK58_02390 a501fdd7832d6761094cdc13b500c30b 306 SMART SM00138 35 306 4.3E-108 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMK58_11635 5044cea4c68a76fb4438a36f51a8f9c4 280 Gene3D G3DSA:3.40.50.1820 31 274 5.8E-53 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_11635 5044cea4c68a76fb4438a36f51a8f9c4 280 Pfam PF07859 alpha/beta hydrolase fold 74 184 1.5E-15 T 11-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 AMK58_11635 5044cea4c68a76fb4438a36f51a8f9c4 280 ProSitePatterns PS00122 Carboxylesterases type-B serine active site. 138 153 - T 11-10-2018 IPR019826 Carboxylesterase type B, active site AMK58_11635 5044cea4c68a76fb4438a36f51a8f9c4 280 SUPERFAMILY SSF53474 15 277 3.82E-43 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_03715 5fb957157bb51fa17acce10011eda5d4 689 SUPERFAMILY SSF54862 264 627 8.05E-41 T 11-10-2018 AMK58_03715 5fb957157bb51fa17acce10011eda5d4 689 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 317 328 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMK58_03715 5fb957157bb51fa17acce10011eda5d4 689 Gene3D G3DSA:3.30.70.20 282 344 1.8E-14 T 11-10-2018 AMK58_03715 5fb957157bb51fa17acce10011eda5d4 689 Gene3D G3DSA:3.30.70.20 521 587 3.7E-10 T 11-10-2018 AMK58_03715 5fb957157bb51fa17acce10011eda5d4 689 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 558 569 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMK58_03715 5fb957157bb51fa17acce10011eda5d4 689 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 527 538 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMK58_03715 5fb957157bb51fa17acce10011eda5d4 689 Pfam PF12838 4Fe-4S dicluster domain 289 331 6.1E-8 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMK58_11370 16816dafff24d57e74ed024f3ff4b925 242 Hamap MF_00095 Sugar fermentation stimulation protein A [sfsA]. 1 241 55.51 T 11-10-2018 IPR005224 Sugar fermentation stimulation protein AMK58_11370 16816dafff24d57e74ed024f3ff4b925 242 Pfam PF03749 Sugar fermentation stimulation protein 13 232 1.8E-73 T 11-10-2018 IPR005224 Sugar fermentation stimulation protein AMK58_11370 16816dafff24d57e74ed024f3ff4b925 242 TIGRFAM TIGR00230 sfsA: sugar fermentation stimulation protein 5 228 5.7E-61 T 11-10-2018 IPR005224 Sugar fermentation stimulation protein AMK58_11370 16816dafff24d57e74ed024f3ff4b925 242 Gene3D G3DSA:3.40.1350.60 84 241 5.1E-52 T 11-10-2018 AMK58_11370 16816dafff24d57e74ed024f3ff4b925 242 Gene3D G3DSA:2.40.50.580 1 75 1.1E-25 T 11-10-2018 AMK58_08600 762f05ee93250e0d07dab49182f5abc1 298 SUPERFAMILY SSF47240 1 285 1.59E-84 T 11-10-2018 IPR009078 Ferritin-like superfamily AMK58_08600 762f05ee93250e0d07dab49182f5abc1 298 Gene3D G3DSA:1.20.1260.10 1 199 1.3E-71 T 11-10-2018 IPR012347 Ferritin-like AMK58_08600 762f05ee93250e0d07dab49182f5abc1 298 Pfam PF05067 Manganese containing catalase 1 266 2.0E-85 T 11-10-2018 IPR007760 Manganese catalase AMK58_16165 64944a2aa23671339127d49419017027 316 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 238 313 2.0E-13 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMK58_16165 64944a2aa23671339127d49419017027 316 SUPERFAMILY SSF52540 17 259 2.22E-65 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_16165 64944a2aa23671339127d49419017027 316 Pfam PF00005 ABC transporter 41 188 3.0E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_16165 64944a2aa23671339127d49419017027 316 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 240 294 4.2E-11 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMK58_16165 64944a2aa23671339127d49419017027 316 ProSitePatterns PS00211 ABC transporters family signature. 161 175 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_16165 64944a2aa23671339127d49419017027 316 SMART SM00382 50 246 2.0E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_16165 64944a2aa23671339127d49419017027 316 Gene3D G3DSA:3.40.50.300 16 316 1.8E-85 T 11-10-2018 AMK58_16065 c90bb15e3ab4fc2f350e69fb76521cc5 766 Gene3D G3DSA:2.40.50.140 642 727 7.6E-16 T 11-10-2018 AMK58_16065 c90bb15e3ab4fc2f350e69fb76521cc5 766 SUPERFAMILY SSF50249 231 638 3.54E-130 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_16065 c90bb15e3ab4fc2f350e69fb76521cc5 766 ProSitePatterns PS01175 Ribonuclease II family signature. 559 583 - T 11-10-2018 IPR022966 Ribonuclease II/R, conserved site AMK58_16065 c90bb15e3ab4fc2f350e69fb76521cc5 766 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 127 710 1.3E-152 T 11-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 AMK58_16065 c90bb15e3ab4fc2f350e69fb76521cc5 766 SMART SM00955 261 592 8.4E-158 T 11-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 AMK58_16065 c90bb15e3ab4fc2f350e69fb76521cc5 766 Hamap MF_01895 Ribonuclease R [rnr]. 36 721 54.297 T 11-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 AMK58_16065 c90bb15e3ab4fc2f350e69fb76521cc5 766 Pfam PF00773 RNB domain 261 587 5.0E-92 T 11-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 AMK58_16065 c90bb15e3ab4fc2f350e69fb76521cc5 766 SUPERFAMILY SSF50249 638 715 1.23E-18 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_16065 c90bb15e3ab4fc2f350e69fb76521cc5 766 SMART SM00316 638 721 1.6E-7 T 11-10-2018 IPR022967 RNA-binding domain, S1 AMK58_16065 c90bb15e3ab4fc2f350e69fb76521cc5 766 Pfam PF00575 S1 RNA binding domain 638 706 7.7E-10 T 11-10-2018 IPR003029 S1 domain GO:0003676 AMK58_16065 c90bb15e3ab4fc2f350e69fb76521cc5 766 TIGRFAM TIGR02063 RNase_R: ribonuclease R 18 720 4.1E-210 T 11-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 AMK58_01015 186914a4014659723f8a63351765a081 245 Gene3D G3DSA:2.60.120.10 45 162 6.7E-44 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_01015 186914a4014659723f8a63351765a081 245 Gene3D G3DSA:1.10.10.10 163 244 3.6E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_01015 186914a4014659723f8a63351765a081 245 ProSitePatterns PS00042 Crp-type HTH domain signature. 193 216 - T 11-10-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 AMK58_01015 186914a4014659723f8a63351765a081 245 SMART SM00419 185 234 2.4E-11 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMK58_01015 186914a4014659723f8a63351765a081 245 SUPERFAMILY SSF51206 24 161 1.44E-34 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like AMK58_01015 186914a4014659723f8a63351765a081 245 SMART SM00100 31 149 2.2E-26 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_01015 186914a4014659723f8a63351765a081 245 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 191 207 2.5E-10 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMK58_01015 186914a4014659723f8a63351765a081 245 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 207 222 2.5E-10 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMK58_01015 186914a4014659723f8a63351765a081 245 Pfam PF13545 Crp-like helix-turn-helix domain 166 238 1.1E-17 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMK58_01015 186914a4014659723f8a63351765a081 245 Pfam PF00027 Cyclic nucleotide-binding domain 51 133 2.0E-17 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_01015 186914a4014659723f8a63351765a081 245 SUPERFAMILY SSF46785 163 242 9.74E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_25820 2cf233eac996cbdb92a6d6ab6ea65115 394 Gene3D G3DSA:1.20.1250.20 11 380 2.5E-38 T 11-10-2018 AMK58_25820 2cf233eac996cbdb92a6d6ab6ea65115 394 SUPERFAMILY SSF103473 8 383 9.68E-46 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_25820 2cf233eac996cbdb92a6d6ab6ea65115 394 Pfam PF07690 Major Facilitator Superfamily 17 344 8.3E-27 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMK58_04395 fce2545cb7660585ff3ecd775117efa3 200 SUPERFAMILY SSF52833 40 196 3.45E-56 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_04395 fce2545cb7660585ff3ecd775117efa3 200 Pfam PF02630 SCO1/SenC 32 181 4.8E-50 T 11-10-2018 IPR003782 Copper chaperone SCO1/SenC Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_04395 fce2545cb7660585ff3ecd775117efa3 200 Gene3D G3DSA:3.40.30.10 33 196 3.0E-61 T 11-10-2018 AMK58_29025 316f616b38263fd4851607f15fec994f 480 SUPERFAMILY SSF53448 10 290 7.35E-71 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_29025 316f616b38263fd4851607f15fec994f 480 SUPERFAMILY SSF51182 194 479 1.31E-84 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily AMK58_29025 316f616b38263fd4851607f15fec994f 480 TIGRFAM TIGR01479 GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 10 479 9.1E-210 T 11-10-2018 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase GO:0000271|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 AMK58_29025 316f616b38263fd4851607f15fec994f 480 Gene3D G3DSA:3.90.550.10 8 361 2.1E-113 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_29025 316f616b38263fd4851607f15fec994f 480 Gene3D G3DSA:2.60.120.10 370 471 3.1E-19 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_29025 316f616b38263fd4851607f15fec994f 480 Pfam PF00483 Nucleotidyl transferase 12 294 1.8E-65 T 11-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AMK58_29025 316f616b38263fd4851607f15fec994f 480 Pfam PF01050 Mannose-6-phosphate isomerase 325 475 3.5E-70 T 11-10-2018 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal GO:0005976|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 AMK58_26350 dda6afb7f0a913f1426269e95265bf47 170 Pfam PF00583 Acetyltransferase (GNAT) family 37 134 6.8E-12 T 11-10-2018 IPR000182 GNAT domain AMK58_26350 dda6afb7f0a913f1426269e95265bf47 170 Gene3D G3DSA:3.40.630.30 1 143 1.3E-22 T 11-10-2018 AMK58_26350 dda6afb7f0a913f1426269e95265bf47 170 SUPERFAMILY SSF55729 1 137 6.0E-23 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_05485 2108b8048146a9f02694bed8b9e26afb 509 Pfam PF13180 PDZ domain 288 379 4.9E-18 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMK58_05485 2108b8048146a9f02694bed8b9e26afb 509 SUPERFAMILY SSF50156 246 371 2.89E-25 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 AMK58_05485 2108b8048146a9f02694bed8b9e26afb 509 SUPERFAMILY SSF50156 413 505 1.97E-15 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 AMK58_05485 2108b8048146a9f02694bed8b9e26afb 509 Gene3D G3DSA:2.30.42.10 283 389 1.2E-28 T 11-10-2018 AMK58_05485 2108b8048146a9f02694bed8b9e26afb 509 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 412 483 4.0E-7 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMK58_05485 2108b8048146a9f02694bed8b9e26afb 509 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 47 503 2.5E-162 T 11-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 AMK58_05485 2108b8048146a9f02694bed8b9e26afb 509 Pfam PF13365 Trypsin-like peptidase domain 114 249 1.2E-31 T 11-10-2018 AMK58_05485 2108b8048146a9f02694bed8b9e26afb 509 Gene3D G3DSA:2.40.10.120 46 282 3.5E-89 T 11-10-2018 AMK58_05485 2108b8048146a9f02694bed8b9e26afb 509 PRINTS PR00834 HtrA/DegQ protease family signature 186 210 1.1E-56 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMK58_05485 2108b8048146a9f02694bed8b9e26afb 509 PRINTS PR00834 HtrA/DegQ protease family signature 220 237 1.1E-56 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMK58_05485 2108b8048146a9f02694bed8b9e26afb 509 PRINTS PR00834 HtrA/DegQ protease family signature 145 165 1.1E-56 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMK58_05485 2108b8048146a9f02694bed8b9e26afb 509 PRINTS PR00834 HtrA/DegQ protease family signature 124 136 1.1E-56 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMK58_05485 2108b8048146a9f02694bed8b9e26afb 509 PRINTS PR00834 HtrA/DegQ protease family signature 328 340 1.1E-56 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMK58_05485 2108b8048146a9f02694bed8b9e26afb 509 PRINTS PR00834 HtrA/DegQ protease family signature 242 259 1.1E-56 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMK58_05485 2108b8048146a9f02694bed8b9e26afb 509 SUPERFAMILY SSF50494 45 284 5.19E-67 T 11-10-2018 IPR009003 Peptidase S1, PA clan AMK58_05485 2108b8048146a9f02694bed8b9e26afb 509 SMART SM00228 288 370 7.4E-13 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMK58_05485 2108b8048146a9f02694bed8b9e26afb 509 SMART SM00228 412 497 5.3E-7 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMK58_05485 2108b8048146a9f02694bed8b9e26afb 509 Gene3D G3DSA:2.30.42.60 402 508 3.6E-17 T 11-10-2018 AMK58_23235 31c29abda2c7f5c4f37ad96aba213ed3 393 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 7 391 1.3E-125 T 11-10-2018 IPR002155 Thiolase GO:0016747 AMK58_23235 31c29abda2c7f5c4f37ad96aba213ed3 393 Gene3D G3DSA:3.40.47.10 127 389 2.5E-141 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_23235 31c29abda2c7f5c4f37ad96aba213ed3 393 ProSitePatterns PS00099 Thiolases active site. 374 387 - T 11-10-2018 IPR020610 Thiolase, active site GO:0016747 AMK58_23235 31c29abda2c7f5c4f37ad96aba213ed3 393 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 85 103 - T 11-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 AMK58_23235 31c29abda2c7f5c4f37ad96aba213ed3 393 PIRSF PIRSF000429 1 393 4.6E-110 T 11-10-2018 IPR002155 Thiolase GO:0016747 AMK58_23235 31c29abda2c7f5c4f37ad96aba213ed3 393 Pfam PF00108 Thiolase, N-terminal domain 5 262 2.1E-86 T 11-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 AMK58_23235 31c29abda2c7f5c4f37ad96aba213ed3 393 SUPERFAMILY SSF53901 5 270 5.54E-79 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_23235 31c29abda2c7f5c4f37ad96aba213ed3 393 Pfam PF02803 Thiolase, C-terminal domain 271 391 1.4E-43 T 11-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 AMK58_23235 31c29abda2c7f5c4f37ad96aba213ed3 393 SUPERFAMILY SSF53901 272 392 7.88E-41 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_23235 31c29abda2c7f5c4f37ad96aba213ed3 393 Gene3D G3DSA:3.40.47.10 6 276 2.5E-141 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_01180 930824a42d8a35ad99040c436503a379 837 SMART SM00490 188 277 6.7E-10 T 11-10-2018 IPR001650 Helicase, C-terminal AMK58_01180 930824a42d8a35ad99040c436503a379 837 SUPERFAMILY SSF52540 16 124 2.09E-8 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_01180 930824a42d8a35ad99040c436503a379 837 Gene3D G3DSA:3.40.50.300 158 304 6.9E-60 T 11-10-2018 AMK58_01180 930824a42d8a35ad99040c436503a379 837 SUPERFAMILY SSF52540 151 406 7.45E-37 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_01180 930824a42d8a35ad99040c436503a379 837 Pfam PF00271 Helicase conserved C-terminal domain 177 276 8.8E-7 T 11-10-2018 IPR001650 Helicase, C-terminal AMK58_01180 930824a42d8a35ad99040c436503a379 837 Gene3D G3DSA:3.40.50.300 17 157 6.9E-60 T 11-10-2018 AMK58_11030 2794568d39ac1cce31673acafa595f9c 619 SMART SM00100 17 134 8.9E-6 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_11030 2794568d39ac1cce31673acafa595f9c 619 Pfam PF10335 Putative nucleotidyltransferase substrate binding domain 471 614 1.9E-43 T 11-10-2018 IPR018821 Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding AMK58_11030 2794568d39ac1cce31673acafa595f9c 619 SMART SM00116 161 208 3.2E-7 T 11-10-2018 IPR000644 CBS domain AMK58_11030 2794568d39ac1cce31673acafa595f9c 619 SMART SM00116 225 272 7.7 T 11-10-2018 IPR000644 CBS domain AMK58_11030 2794568d39ac1cce31673acafa595f9c 619 Gene3D G3DSA:3.10.580.10 149 275 1.4E-30 T 11-10-2018 AMK58_11030 2794568d39ac1cce31673acafa595f9c 619 Gene3D G3DSA:2.60.120.10 6 145 2.3E-16 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_11030 2794568d39ac1cce31673acafa595f9c 619 Pfam PF00027 Cyclic nucleotide-binding domain 36 118 3.6E-12 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_11030 2794568d39ac1cce31673acafa595f9c 619 Pfam PF00571 CBS domain 218 269 9.2E-7 T 11-10-2018 IPR000644 CBS domain AMK58_11030 2794568d39ac1cce31673acafa595f9c 619 Pfam PF00571 CBS domain 154 207 4.1E-10 T 11-10-2018 IPR000644 CBS domain AMK58_11030 2794568d39ac1cce31673acafa595f9c 619 SUPERFAMILY SSF51206 7 128 2.62E-21 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like AMK58_11030 2794568d39ac1cce31673acafa595f9c 619 Pfam PF03445 Putative nucleotidyltransferase DUF294 297 434 1.3E-47 T 11-10-2018 IPR005105 Protein-PII uridylyltransferase, N-terminal GO:0008773 AMK58_11030 2794568d39ac1cce31673acafa595f9c 619 SUPERFAMILY SSF54631 150 269 1.26E-29 T 11-10-2018 AMK58_08285 d09f78884a11e98f64caf3c9b2aa60e6 339 PIRSF PIRSF005303 10 339 1.7E-77 T 11-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 AMK58_08285 d09f78884a11e98f64caf3c9b2aa60e6 339 SUPERFAMILY SSF55326 14 152 9.77E-32 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMK58_08285 d09f78884a11e98f64caf3c9b2aa60e6 339 Pfam PF02769 AIR synthase related protein, C-terminal domain 164 321 9.8E-12 T 11-10-2018 IPR010918 PurM-like, C-terminal domain AMK58_08285 d09f78884a11e98f64caf3c9b2aa60e6 339 Gene3D G3DSA:3.30.1330.10 14 158 1.4E-37 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMK58_08285 d09f78884a11e98f64caf3c9b2aa60e6 339 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 16 339 2.7E-87 T 11-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 AMK58_08285 d09f78884a11e98f64caf3c9b2aa60e6 339 SUPERFAMILY SSF56042 159 317 1.26E-32 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMK58_08285 d09f78884a11e98f64caf3c9b2aa60e6 339 Pfam PF00586 AIR synthase related protein, N-terminal domain 40 152 1.6E-20 T 11-10-2018 IPR016188 PurM-like, N-terminal domain AMK58_08285 d09f78884a11e98f64caf3c9b2aa60e6 339 Gene3D G3DSA:3.90.650.10 160 339 2.7E-49 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMK58_08285 d09f78884a11e98f64caf3c9b2aa60e6 339 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 15 339 27.145 T 11-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 AMK58_21110 166fd11fe7847d5cf5449563321279d7 266 Pfam PF02673 Bacitracin resistance protein BacA 9 257 2.1E-79 T 11-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 AMK58_21110 166fd11fe7847d5cf5449563321279d7 266 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 4 264 17.163 T 11-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 AMK58_21110 166fd11fe7847d5cf5449563321279d7 266 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 9 257 6.3E-72 T 11-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 AMK58_10215 6052cb9a06db31388bf3db5269ffffd6 508 Pfam PF13649 Methyltransferase domain 50 146 8.2E-10 T 11-10-2018 AMK58_10215 6052cb9a06db31388bf3db5269ffffd6 508 Gene3D G3DSA:3.40.50.150 39 171 7.6E-17 T 11-10-2018 AMK58_10215 6052cb9a06db31388bf3db5269ffffd6 508 SUPERFAMILY SSF53335 47 178 2.11E-21 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_10215 6052cb9a06db31388bf3db5269ffffd6 508 Pfam PF10119 Predicted methyltransferase regulatory domain 219 301 9.5E-31 T 11-10-2018 IPR018773 Methyltransferase regulatory domain, predicted AMK58_26295 b5a3fe0b64f7a2c9783dc776a7886c30 308 Pfam PF00175 Oxidoreductase NAD-binding domain 104 193 1.7E-6 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AMK58_26295 b5a3fe0b64f7a2c9783dc776a7886c30 308 SUPERFAMILY SSF52343 90 210 4.19E-26 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMK58_26295 b5a3fe0b64f7a2c9783dc776a7886c30 308 PRINTS PR00409 Phthalate dioxygenase reductase family signature 23 33 2.9E-28 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 AMK58_26295 b5a3fe0b64f7a2c9783dc776a7886c30 308 PRINTS PR00409 Phthalate dioxygenase reductase family signature 179 187 2.9E-28 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 AMK58_26295 b5a3fe0b64f7a2c9783dc776a7886c30 308 PRINTS PR00409 Phthalate dioxygenase reductase family signature 128 137 2.9E-28 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 AMK58_26295 b5a3fe0b64f7a2c9783dc776a7886c30 308 PRINTS PR00409 Phthalate dioxygenase reductase family signature 103 122 2.9E-28 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 AMK58_26295 b5a3fe0b64f7a2c9783dc776a7886c30 308 PRINTS PR00409 Phthalate dioxygenase reductase family signature 45 59 2.9E-28 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 AMK58_26295 b5a3fe0b64f7a2c9783dc776a7886c30 308 PRINTS PR00409 Phthalate dioxygenase reductase family signature 33 45 2.9E-28 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 AMK58_26295 b5a3fe0b64f7a2c9783dc776a7886c30 308 Gene3D G3DSA:2.40.30.10 1 93 1.5E-26 T 11-10-2018 AMK58_26295 b5a3fe0b64f7a2c9783dc776a7886c30 308 Gene3D G3DSA:3.10.20.30 212 308 7.8E-24 T 11-10-2018 IPR012675 Beta-grasp domain superfamily AMK58_26295 b5a3fe0b64f7a2c9783dc776a7886c30 308 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 229 299 2.5E-11 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMK58_26295 b5a3fe0b64f7a2c9783dc776a7886c30 308 SUPERFAMILY SSF63380 2 92 5.2E-25 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AMK58_26295 b5a3fe0b64f7a2c9783dc776a7886c30 308 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 257 265 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AMK58_26295 b5a3fe0b64f7a2c9783dc776a7886c30 308 Pfam PF00970 Oxidoreductase FAD-binding domain 3 95 3.0E-6 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 AMK58_26295 b5a3fe0b64f7a2c9783dc776a7886c30 308 Gene3D G3DSA:3.40.50.80 97 207 1.3E-24 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMK58_26295 b5a3fe0b64f7a2c9783dc776a7886c30 308 SUPERFAMILY SSF54292 199 306 1.7E-25 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMK58_02230 d161628de4dd39cdd20f0593220cdd6d 157 PRINTS PR01837 MgtC/SapB protein signature 38 56 1.4E-36 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 AMK58_02230 d161628de4dd39cdd20f0593220cdd6d 157 PRINTS PR01837 MgtC/SapB protein signature 19 38 1.4E-36 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 AMK58_02230 d161628de4dd39cdd20f0593220cdd6d 157 PRINTS PR01837 MgtC/SapB protein signature 74 96 1.4E-36 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 AMK58_02230 d161628de4dd39cdd20f0593220cdd6d 157 PRINTS PR01837 MgtC/SapB protein signature 101 125 1.4E-36 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 AMK58_02230 d161628de4dd39cdd20f0593220cdd6d 157 Pfam PF02308 MgtC family 16 143 4.7E-29 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 AMK58_28095 d0baedd74b625d3faa71af31dd1611ce 734 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 327 561 2.4E-26 T 11-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMK58_28095 d0baedd74b625d3faa71af31dd1611ce 734 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 601 681 1.4E-12 T 11-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMK58_28095 d0baedd74b625d3faa71af31dd1611ce 734 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 62 203 3.1E-12 T 11-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMK58_28095 d0baedd74b625d3faa71af31dd1611ce 734 SUPERFAMILY SSF56003 29 260 1.29E-38 T 11-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 AMK58_28095 d0baedd74b625d3faa71af31dd1611ce 734 SMART SM01008 226 304 1.5E-17 T 11-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMK58_28095 d0baedd74b625d3faa71af31dd1611ce 734 SUPERFAMILY SSF56003 327 733 4.06E-105 T 11-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 AMK58_28095 d0baedd74b625d3faa71af31dd1611ce 734 PIRSF PIRSF036389 9 734 2.1E-238 T 11-10-2018 IPR012368 Oxidoreductase molybdopterin-binding subunit, IorB-related AMK58_28095 d0baedd74b625d3faa71af31dd1611ce 734 Gene3D G3DSA:3.30.365.10 591 731 1.2E-36 T 11-10-2018 AMK58_28095 d0baedd74b625d3faa71af31dd1611ce 734 Gene3D G3DSA:3.30.365.10 332 560 4.0E-51 T 11-10-2018 AMK58_28095 d0baedd74b625d3faa71af31dd1611ce 734 Gene3D G3DSA:3.30.365.10 356 447 4.0E-51 T 11-10-2018 AMK58_28095 d0baedd74b625d3faa71af31dd1611ce 734 Gene3D G3DSA:3.30.365.10 60 201 6.6E-19 T 11-10-2018 AMK58_04000 3971318040eee7ce1d7eea4fed3cbe5f 1202 Pfam PF01968 Hydantoinase/oxoprolinase 209 496 1.6E-115 T 11-10-2018 IPR002821 Hydantoinase A/oxoprolinase GO:0016787 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 AMK58_04000 3971318040eee7ce1d7eea4fed3cbe5f 1202 Pfam PF02538 Hydantoinase B/oxoprolinase 695 1199 2.9E-212 T 11-10-2018 IPR003692 Hydantoinase B/oxoprolinase GO:0003824 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 AMK58_04000 3971318040eee7ce1d7eea4fed3cbe5f 1202 Pfam PF05378 Hydantoinase/oxoprolinase N-terminal region 11 190 2.0E-60 T 11-10-2018 IPR008040 Hydantoinaseoxoprolinase, N-terminal Reactome: R-HSA-174403|Reactome: R-HSA-5578998 AMK58_01930 0ea89d104e868918c070363165a44cfc 567 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 442 560 2.8E-18 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_01930 0ea89d104e868918c070363165a44cfc 567 SMART SM00387 441 562 1.6E-30 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_01930 0ea89d104e868918c070363165a44cfc 567 SUPERFAMILY SSF55874 397 561 7.73E-37 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_01930 0ea89d104e868918c070363165a44cfc 567 SUPERFAMILY SSF47384 323 396 3.14E-5 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_01930 0ea89d104e868918c070363165a44cfc 567 Gene3D G3DSA:1.10.287.130 327 398 3.4E-12 T 11-10-2018 AMK58_01930 0ea89d104e868918c070363165a44cfc 567 PRINTS PR00344 Bacterial sensor protein C-terminal signature 509 519 1.5E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_01930 0ea89d104e868918c070363165a44cfc 567 PRINTS PR00344 Bacterial sensor protein C-terminal signature 522 540 1.5E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_01930 0ea89d104e868918c070363165a44cfc 567 PRINTS PR00344 Bacterial sensor protein C-terminal signature 491 505 1.5E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_01930 0ea89d104e868918c070363165a44cfc 567 PRINTS PR00344 Bacterial sensor protein C-terminal signature 546 559 1.5E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_01930 0ea89d104e868918c070363165a44cfc 567 Gene3D G3DSA:3.30.565.10 404 564 9.1E-38 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_08030 e3b3f53afcc23fef4efb0503249e344b 184 SUPERFAMILY SSF52833 5 182 5.62E-47 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_08030 e3b3f53afcc23fef4efb0503249e344b 184 Pfam PF00578 AhpC/TSA family 11 131 6.1E-22 T 11-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMK58_08030 e3b3f53afcc23fef4efb0503249e344b 184 Gene3D G3DSA:3.40.30.10 7 183 2.5E-43 T 11-10-2018 AMK58_19910 6559ad2cbed98bb2f4fa84ac294ff0c6 136 Gene3D G3DSA:3.40.50.2300 6 133 2.9E-27 T 11-10-2018 AMK58_19910 6559ad2cbed98bb2f4fa84ac294ff0c6 136 SUPERFAMILY SSF52172 6 128 2.28E-27 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_19910 6559ad2cbed98bb2f4fa84ac294ff0c6 136 Pfam PF00072 Response regulator receiver domain 9 123 6.8E-19 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_19910 6559ad2cbed98bb2f4fa84ac294ff0c6 136 SMART SM00448 7 123 2.4E-18 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_16450 ff42396e5067b565d8dd23bdc9e9dbd1 658 Gene3D G3DSA:1.20.1480.50 150 246 2.0E-9 T 11-10-2018 AMK58_16450 ff42396e5067b565d8dd23bdc9e9dbd1 658 Pfam PF07690 Major Facilitator Superfamily 259 491 5.5E-26 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMK58_16450 ff42396e5067b565d8dd23bdc9e9dbd1 658 SUPERFAMILY SSF158472 186 234 1.83E-7 T 11-10-2018 AMK58_16450 ff42396e5067b565d8dd23bdc9e9dbd1 658 Gene3D G3DSA:1.20.1250.20 252 646 3.7E-53 T 11-10-2018 AMK58_16450 ff42396e5067b565d8dd23bdc9e9dbd1 658 SMART SM00304 185 237 9.6E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_16450 ff42396e5067b565d8dd23bdc9e9dbd1 658 SUPERFAMILY SSF103473 259 648 3.53E-55 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_16450 ff42396e5067b565d8dd23bdc9e9dbd1 658 Pfam PF00672 HAMP domain 186 234 2.2E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_00925 98a4f94624ad960d257c40b5c126d25a 538 Pfam PF04234 CopC domain 24 114 1.7E-17 T 11-10-2018 IPR007348 CopC domain GO:0005507|GO:0042597|GO:0046688 AMK58_00925 98a4f94624ad960d257c40b5c126d25a 538 SUPERFAMILY SSF81296 23 115 3.67E-18 T 11-10-2018 IPR014756 Immunoglobulin E-set AMK58_00925 98a4f94624ad960d257c40b5c126d25a 538 Gene3D G3DSA:2.60.40.1220 24 120 4.0E-14 T 11-10-2018 AMK58_00925 98a4f94624ad960d257c40b5c126d25a 538 Pfam PF05425 Copper resistance protein D 312 412 8.2E-21 T 11-10-2018 IPR008457 Copper resistance protein D GO:0016021 AMK58_27445 264e41444044c573620878e76973e94f 268 TIGRFAM TIGR01581 Mo_ABC_porter: NifC-like ABC-type porter 25 244 9.2E-69 T 11-10-2018 IPR006469 NifC-like ABC-type porter GO:0005215|GO:0016020|GO:0055085 AMK58_27445 264e41444044c573620878e76973e94f 268 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 65 252 5.4E-20 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_27445 264e41444044c573620878e76973e94f 268 SUPERFAMILY SSF161098 4 248 2.24E-46 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_27445 264e41444044c573620878e76973e94f 268 Gene3D G3DSA:1.10.3720.10 1 259 1.8E-57 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_24745 9eec76102cecef5d553005aa7cf767c8 262 Pfam PF09339 IclR helix-turn-helix domain 13 62 1.2E-15 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMK58_24745 9eec76102cecef5d553005aa7cf767c8 262 Gene3D G3DSA:3.30.450.40 83 260 1.3E-48 T 11-10-2018 IPR029016 GAF-like domain superfamily AMK58_24745 9eec76102cecef5d553005aa7cf767c8 262 SUPERFAMILY SSF55781 77 259 1.11E-46 T 11-10-2018 AMK58_24745 9eec76102cecef5d553005aa7cf767c8 262 SUPERFAMILY SSF46785 13 84 5.12E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_24745 9eec76102cecef5d553005aa7cf767c8 262 Pfam PF01614 Bacterial transcriptional regulator 128 254 4.5E-29 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal AMK58_24745 9eec76102cecef5d553005aa7cf767c8 262 SMART SM00346 11 101 1.2E-23 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMK58_24745 9eec76102cecef5d553005aa7cf767c8 262 Gene3D G3DSA:1.10.10.10 3 82 4.9E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_10155 db572b5c93a30ff22614331131cb7408 872 SMART SM00028 72 104 55.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_10155 db572b5c93a30ff22614331131cb7408 872 SMART SM00028 242 275 8.2 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_10155 db572b5c93a30ff22614331131cb7408 872 SMART SM00028 4 37 58.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_10155 db572b5c93a30ff22614331131cb7408 872 SMART SM00028 38 71 0.48 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_10155 db572b5c93a30ff22614331131cb7408 872 SMART SM00028 105 138 1.9 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_10155 db572b5c93a30ff22614331131cb7408 872 SMART SM00028 276 309 29.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_10155 db572b5c93a30ff22614331131cb7408 872 SMART SM00028 177 210 49.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_10155 db572b5c93a30ff22614331131cb7408 872 Pfam PF13432 Tetratricopeptide repeat 10 71 2.0E-6 T 11-10-2018 AMK58_10155 db572b5c93a30ff22614331131cb7408 872 Pfam PF13432 Tetratricopeptide repeat 77 135 7.2E-6 T 11-10-2018 AMK58_10155 db572b5c93a30ff22614331131cb7408 872 Pfam PF13432 Tetratricopeptide repeat 149 208 0.0097 T 11-10-2018 AMK58_10155 db572b5c93a30ff22614331131cb7408 872 Gene3D G3DSA:1.25.40.10 2 138 1.5E-22 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_10155 db572b5c93a30ff22614331131cb7408 872 SUPERFAMILY SSF48452 6 210 4.14E-23 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_10155 db572b5c93a30ff22614331131cb7408 872 Pfam PF13176 Tetratricopeptide repeat 245 270 0.033 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_10155 db572b5c93a30ff22614331131cb7408 872 SUPERFAMILY SSF48452 222 340 1.44E-12 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_10155 db572b5c93a30ff22614331131cb7408 872 Gene3D G3DSA:3.40.50.150 643 854 1.7E-51 T 11-10-2018 AMK58_10155 db572b5c93a30ff22614331131cb7408 872 Pfam PF04488 Glycosyltransferase sugar-binding region containing DXD motif 469 496 6.4E-5 T 11-10-2018 IPR007577 Glycosyltransferase, DXD sugar-binding motif AMK58_10155 db572b5c93a30ff22614331131cb7408 872 SUPERFAMILY SSF53335 667 802 4.8E-14 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_10155 db572b5c93a30ff22614331131cb7408 872 Gene3D G3DSA:1.25.40.10 215 341 3.8E-12 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_10155 db572b5c93a30ff22614331131cb7408 872 SUPERFAMILY SSF53448 468 515 3.94E-8 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_10155 db572b5c93a30ff22614331131cb7408 872 Gene3D G3DSA:1.25.40.10 143 214 2.6E-7 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_19305 dc41ea01772cc9b73adb9defddfd41ce 313 PIRSF PIRSF005624 87 311 2.1E-94 T 11-10-2018 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0016151 AMK58_19305 dc41ea01772cc9b73adb9defddfd41ce 313 SUPERFAMILY SSF52540 110 302 1.3E-32 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_19305 dc41ea01772cc9b73adb9defddfd41ce 313 Gene3D G3DSA:3.40.50.300 102 308 4.5E-64 T 11-10-2018 AMK58_19305 dc41ea01772cc9b73adb9defddfd41ce 313 TIGRFAM TIGR00073 hypB: hydrogenase accessory protein HypB 94 302 3.6E-88 T 11-10-2018 IPR004392 Hydrogenase maturation factor HypB GO:0016151|GO:0051604 AMK58_19305 dc41ea01772cc9b73adb9defddfd41ce 313 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 122 283 2.1E-35 T 11-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain AMK58_17240 6ca0d1950e073859d1d313346903300f 266 SUPERFAMILY SSF52172 8 163 4.55E-32 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_17240 6ca0d1950e073859d1d313346903300f 266 SMART SM00448 7 119 3.8E-31 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_17240 6ca0d1950e073859d1d313346903300f 266 SMART SM00862 159 241 6.7E-11 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_17240 6ca0d1950e073859d1d313346903300f 266 Pfam PF00072 Response regulator receiver domain 9 118 9.6E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_17240 6ca0d1950e073859d1d313346903300f 266 Gene3D G3DSA:3.40.50.2300 5 134 4.8E-30 T 11-10-2018 AMK58_17240 6ca0d1950e073859d1d313346903300f 266 Gene3D G3DSA:1.10.10.10 135 243 3.3E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_17240 6ca0d1950e073859d1d313346903300f 266 SUPERFAMILY SSF46894 140 241 9.07E-15 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMK58_17240 6ca0d1950e073859d1d313346903300f 266 Pfam PF00486 Transcriptional regulatory protein, C terminal 159 240 2.0E-9 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_05275 91b0ae37220604ac57abade051b8e650 560 Pfam PF00672 HAMP domain 211 259 5.7E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_05275 91b0ae37220604ac57abade051b8e650 560 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 364 522 2.6E-27 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_05275 91b0ae37220604ac57abade051b8e650 560 Pfam PF12729 Four helix bundle sensory module for signal transduction 6 166 1.4E-9 T 11-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain AMK58_05275 91b0ae37220604ac57abade051b8e650 560 Gene3D G3DSA:1.10.287.950 270 558 8.9E-52 T 11-10-2018 AMK58_05275 91b0ae37220604ac57abade051b8e650 560 SMART SM00304 211 264 2.3E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_05275 91b0ae37220604ac57abade051b8e650 560 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 321 350 1.6E-21 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_05275 91b0ae37220604ac57abade051b8e650 560 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 427 456 1.6E-21 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_05275 91b0ae37220604ac57abade051b8e650 560 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 16 41 1.6E-21 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_05275 91b0ae37220604ac57abade051b8e650 560 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 475 504 1.6E-21 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_05275 91b0ae37220604ac57abade051b8e650 560 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 398 425 1.6E-21 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_05275 91b0ae37220604ac57abade051b8e650 560 SUPERFAMILY SSF58104 241 553 2.88E-56 T 11-10-2018 AMK58_05275 91b0ae37220604ac57abade051b8e650 560 Gene3D G3DSA:1.20.1480.50 173 269 5.4E-16 T 11-10-2018 AMK58_05275 91b0ae37220604ac57abade051b8e650 560 SMART SM00283 307 554 6.2E-45 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_01450 c6e8dd24a2e72154c7b68968e36bf1ba 157 Gene3D G3DSA:3.40.50.2300 1 156 1.1E-60 T 11-10-2018 AMK58_01450 c6e8dd24a2e72154c7b68968e36bf1ba 157 SMART SM00226 2 151 2.0E-58 T 11-10-2018 IPR023485 Phosphotyrosine protein phosphatase I AMK58_01450 c6e8dd24a2e72154c7b68968e36bf1ba 157 SUPERFAMILY SSF52788 1 152 2.09E-51 T 11-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily AMK58_01450 c6e8dd24a2e72154c7b68968e36bf1ba 157 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 47 63 1.5E-25 T 11-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AMK58_01450 c6e8dd24a2e72154c7b68968e36bf1ba 157 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 104 117 1.5E-25 T 11-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AMK58_01450 c6e8dd24a2e72154c7b68968e36bf1ba 157 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 123 138 1.5E-25 T 11-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AMK58_01450 c6e8dd24a2e72154c7b68968e36bf1ba 157 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 81 96 1.5E-25 T 11-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AMK58_01450 c6e8dd24a2e72154c7b68968e36bf1ba 157 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 4 21 1.5E-25 T 11-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AMK58_01450 c6e8dd24a2e72154c7b68968e36bf1ba 157 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 4 149 2.1E-42 T 11-10-2018 IPR023485 Phosphotyrosine protein phosphatase I AMK58_14525 e4225e1753d1bb02c3c9aaaef94a190b 279 Gene3D G3DSA:3.10.129.10 3 152 8.8E-14 T 11-10-2018 AMK58_14525 e4225e1753d1bb02c3c9aaaef94a190b 279 Pfam PF13452 N-terminal half of MaoC dehydratase 71 137 2.6E-11 T 11-10-2018 IPR039569 N-terminal of MaoC-like dehydratase Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247|Reactome: R-HSA-9033241|Reactome: R-HSA-9033500 AMK58_14525 e4225e1753d1bb02c3c9aaaef94a190b 279 SUPERFAMILY SSF54637 161 274 1.36E-15 T 11-10-2018 IPR029069 HotDog domain superfamily AMK58_14525 e4225e1753d1bb02c3c9aaaef94a190b 279 Gene3D G3DSA:3.10.129.10 159 278 7.8E-16 T 11-10-2018 AMK58_14525 e4225e1753d1bb02c3c9aaaef94a190b 279 SUPERFAMILY SSF54637 79 145 1.62E-8 T 11-10-2018 IPR029069 HotDog domain superfamily AMK58_15520 e2c16aac4a8d7e95ba15a44c1917f088 309 SUPERFAMILY SSF52768 3 307 4.36E-102 T 11-10-2018 IPR023696 Ureohydrolase domain superfamily AMK58_15520 e2c16aac4a8d7e95ba15a44c1917f088 309 PRINTS PR01270 Histone deacetylase superfamily signature 236 246 2.5E-16 T 11-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AMK58_15520 e2c16aac4a8d7e95ba15a44c1917f088 309 PRINTS PR01270 Histone deacetylase superfamily signature 121 144 2.5E-16 T 11-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AMK58_15520 e2c16aac4a8d7e95ba15a44c1917f088 309 PRINTS PR01270 Histone deacetylase superfamily signature 155 170 2.5E-16 T 11-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AMK58_15520 e2c16aac4a8d7e95ba15a44c1917f088 309 Pfam PF00850 Histone deacetylase domain 20 305 9.4E-86 T 11-10-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AMK58_15520 e2c16aac4a8d7e95ba15a44c1917f088 309 Gene3D G3DSA:3.40.800.20 1 308 1.5E-115 T 11-10-2018 IPR037138 Histone deacetylase domain superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AMK58_08265 97cd817475acc8f77165feee32f102c0 183 Pfam PF03981 Ubiquinol-cytochrome C chaperone 34 174 1.6E-36 T 11-10-2018 IPR021150 Ubiquinol-cytochrome c chaperone/UPF0174 AMK58_08105 ed408efa64c7c0f526c1165bb3c73e04 424 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 69 294 2.7E-38 T 11-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 AMK58_08105 ed408efa64c7c0f526c1165bb3c73e04 424 SUPERFAMILY SSF51419 47 295 2.18E-49 T 11-10-2018 IPR029066 PLP-binding barrel AMK58_08105 ed408efa64c7c0f526c1165bb3c73e04 424 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 284 303 1.8E-22 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AMK58_08105 ed408efa64c7c0f526c1165bb3c73e04 424 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 99 111 1.8E-22 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AMK58_08105 ed408efa64c7c0f526c1165bb3c73e04 424 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 385 398 1.8E-22 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AMK58_08105 ed408efa64c7c0f526c1165bb3c73e04 424 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 78 96 1.8E-22 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AMK58_08105 ed408efa64c7c0f526c1165bb3c73e04 424 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 203 216 1.8E-22 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AMK58_08105 ed408efa64c7c0f526c1165bb3c73e04 424 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 298 382 2.1E-7 T 11-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 AMK58_08105 ed408efa64c7c0f526c1165bb3c73e04 424 SUPERFAMILY SSF50621 277 408 7.74E-28 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AMK58_08105 ed408efa64c7c0f526c1165bb3c73e04 424 Gene3D G3DSA:3.20.20.10 76 292 5.3E-81 T 11-10-2018 IPR029066 PLP-binding barrel AMK58_08105 ed408efa64c7c0f526c1165bb3c73e04 424 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 235 251 - T 11-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site AMK58_08105 ed408efa64c7c0f526c1165bb3c73e04 424 Gene3D G3DSA:2.40.37.10 293 397 5.3E-81 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AMK58_08105 ed408efa64c7c0f526c1165bb3c73e04 424 PRINTS PR01182 Ornithine decarboxylase signature 315 328 1.3E-8 T 11-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 AMK58_08105 ed408efa64c7c0f526c1165bb3c73e04 424 PRINTS PR01182 Ornithine decarboxylase signature 76 103 1.3E-8 T 11-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 AMK58_08105 ed408efa64c7c0f526c1165bb3c73e04 424 PRINTS PR01182 Ornithine decarboxylase signature 372 385 1.3E-8 T 11-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 AMK58_08105 ed408efa64c7c0f526c1165bb3c73e04 424 PRINTS PR01182 Ornithine decarboxylase signature 351 361 1.3E-8 T 11-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 AMK58_08105 ed408efa64c7c0f526c1165bb3c73e04 424 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 78 96 - T 11-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site AMK58_19025 f4374d85a10fdef50f91a78c57538de4 186 Pfam PF03652 Holliday junction resolvase 17 154 5.7E-40 T 11-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 AMK58_19025 f4374d85a10fdef50f91a78c57538de4 186 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 16 157 24.182 T 11-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 AMK58_19025 f4374d85a10fdef50f91a78c57538de4 186 SUPERFAMILY SSF53098 16 155 6.22E-37 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMK58_19025 f4374d85a10fdef50f91a78c57538de4 186 Gene3D G3DSA:3.30.420.140 15 166 8.9E-42 T 11-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 AMK58_19025 f4374d85a10fdef50f91a78c57538de4 186 SMART SM00732 16 121 1.7E-29 T 11-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 AMK58_19025 f4374d85a10fdef50f91a78c57538de4 186 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 19 154 3.3E-31 T 11-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 AMK58_06390 3239e32effec8140e08b869e0a860c14 357 SUPERFAMILY SSF52418 84 347 4.45E-93 T 11-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMK58_06390 3239e32effec8140e08b869e0a860c14 357 Pfam PF00591 Glycosyl transferase family, a/b domain 86 334 4.7E-102 T 11-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMK58_06390 3239e32effec8140e08b869e0a860c14 357 SUPERFAMILY SSF47648 14 80 1.3E-20 T 11-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMK58_06390 3239e32effec8140e08b869e0a860c14 357 Pfam PF02885 Glycosyl transferase family, helical bundle domain 16 77 6.8E-20 T 11-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMK58_06390 3239e32effec8140e08b869e0a860c14 357 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 16 344 38.968 T 11-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 AMK58_06390 3239e32effec8140e08b869e0a860c14 357 Gene3D G3DSA:1.20.970.10 6 81 1.9E-25 T 11-10-2018 AMK58_06390 3239e32effec8140e08b869e0a860c14 357 Gene3D G3DSA:3.40.1030.10 82 351 5.4E-105 T 11-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMK58_06390 3239e32effec8140e08b869e0a860c14 357 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 19 343 2.1E-120 T 11-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 AMK58_09185 e74f7f4d1077974af7faa317344907ab 154 Pfam PF11164 Protein of unknown function (DUF2948) 6 148 5.9E-48 T 11-10-2018 IPR021335 Protein of unknown function DUF2948 AMK58_11095 d76d152cc9b09af1195de6385c588b41 293 SUPERFAMILY SSF56529 73 291 1.03E-83 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AMK58_11095 d76d152cc9b09af1195de6385c588b41 293 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 76 290 1.2E-74 T 11-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 AMK58_11095 d76d152cc9b09af1195de6385c588b41 293 Gene3D G3DSA:3.90.850.10 70 293 6.9E-87 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AMK58_04680 ff5cff28a6595df277389ae66a3c7580 143 Gene3D G3DSA:3.40.30.10 1 114 1.2E-17 T 11-10-2018 AMK58_04680 ff5cff28a6595df277389ae66a3c7580 143 SUPERFAMILY SSF52833 3 121 1.28E-30 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_04680 ff5cff28a6595df277389ae66a3c7580 143 Pfam PF03960 ArsC family 58 112 4.9E-8 T 11-10-2018 IPR006660 Arsenate reductase-like AMK58_04680 ff5cff28a6595df277389ae66a3c7580 143 TIGRFAM TIGR01616 nitro_assoc: nitrogenase-associated protein 2 128 1.3E-56 T 11-10-2018 IPR006503 Nitrogenase-associated protein AMK58_28815 cbbd49e8217c49ea56955a59799590a9 495 Pfam PF00535 Glycosyl transferase family 2 9 181 1.6E-29 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMK58_28815 cbbd49e8217c49ea56955a59799590a9 495 SUPERFAMILY SSF53448 6 225 5.63E-54 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_28815 cbbd49e8217c49ea56955a59799590a9 495 Gene3D G3DSA:3.90.550.10 2 249 6.1E-57 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_15595 09016f5d07c453f52427ef4cd826233f 274 Pfam PF00106 short chain dehydrogenase 2 185 2.3E-47 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15595 09016f5d07c453f52427ef4cd826233f 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 6.2E-23 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15595 09016f5d07c453f52427ef4cd826233f 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 6.2E-23 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15595 09016f5d07c453f52427ef4cd826233f 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 6.2E-23 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15595 09016f5d07c453f52427ef4cd826233f 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 6.2E-23 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15595 09016f5d07c453f52427ef4cd826233f 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 6.2E-23 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15595 09016f5d07c453f52427ef4cd826233f 274 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 133 161 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMK58_15595 09016f5d07c453f52427ef4cd826233f 274 Gene3D G3DSA:3.40.50.720 1 274 8.5E-77 T 11-10-2018 AMK58_15595 09016f5d07c453f52427ef4cd826233f 274 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 6.2E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15595 09016f5d07c453f52427ef4cd826233f 274 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 165 6.2E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15595 09016f5d07c453f52427ef4cd826233f 274 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 134 6.2E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15595 09016f5d07c453f52427ef4cd826233f 274 SUPERFAMILY SSF51735 1 241 5.67E-63 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_07045 5dfed41cc011d8d2f7e123a1e7e120c4 488 Gene3D G3DSA:3.30.390.50 373 475 7.9E-28 T 11-10-2018 AMK58_07045 5dfed41cc011d8d2f7e123a1e7e120c4 488 TIGRFAM TIGR02963 xanthine_xdhA: xanthine dehydrogenase, small subunit 5 474 4.9E-189 T 11-10-2018 IPR014307 Xanthine dehydrogenase, small subunit GO:0004854|GO:0004855|GO:0050660|GO:0055114 KEGG: 00230+1.17.1.4|MetaCyc: PWY-5497|MetaCyc: PWY-5695|MetaCyc: PWY-6538|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-6999|Reactome: R-HSA-74259|Reactome: R-HSA-8851680 AMK58_07045 5dfed41cc011d8d2f7e123a1e7e120c4 488 Gene3D G3DSA:3.10.20.30 2 89 2.0E-23 T 11-10-2018 IPR012675 Beta-grasp domain superfamily AMK58_07045 5dfed41cc011d8d2f7e123a1e7e120c4 488 PIRSF PIRSF036557 2 487 8.7E-197 T 11-10-2018 IPR012175 Xanthine dehydrogenase, small subunit, bacteria AMK58_07045 5dfed41cc011d8d2f7e123a1e7e120c4 488 Gene3D G3DSA:1.10.150.120 90 180 5.0E-31 T 11-10-2018 AMK58_07045 5dfed41cc011d8d2f7e123a1e7e120c4 488 SUPERFAMILY SSF47741 96 175 8.9E-30 T 11-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily AMK58_07045 5dfed41cc011d8d2f7e123a1e7e120c4 488 SUPERFAMILY SSF55447 371 477 5.1E-31 T 11-10-2018 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily AMK58_07045 5dfed41cc011d8d2f7e123a1e7e120c4 488 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 11 70 1.7E-5 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMK58_07045 5dfed41cc011d8d2f7e123a1e7e120c4 488 SUPERFAMILY SSF56176 186 366 1.09E-53 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMK58_07045 5dfed41cc011d8d2f7e123a1e7e120c4 488 SMART SM01092 373 475 9.0E-33 T 11-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal AMK58_07045 5dfed41cc011d8d2f7e123a1e7e120c4 488 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 374 474 1.1E-29 T 11-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal AMK58_07045 5dfed41cc011d8d2f7e123a1e7e120c4 488 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 41 49 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AMK58_07045 5dfed41cc011d8d2f7e123a1e7e120c4 488 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 201 365 1.2E-51 T 11-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 AMK58_07045 5dfed41cc011d8d2f7e123a1e7e120c4 488 SUPERFAMILY SSF54292 4 88 1.31E-14 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMK58_07045 5dfed41cc011d8d2f7e123a1e7e120c4 488 Gene3D G3DSA:3.30.465.10 253 365 1.9E-35 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AMK58_07045 5dfed41cc011d8d2f7e123a1e7e120c4 488 Pfam PF01799 [2Fe-2S] binding domain 84 161 1.3E-27 T 11-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMK58_07045 5dfed41cc011d8d2f7e123a1e7e120c4 488 Gene3D G3DSA:3.30.43.10 203 252 4.8E-20 T 11-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 AMK58_01090 97bbae950a1a3f27c8ef1619f909f05c 164 TIGRFAM TIGR00576 dut: dUTP diphosphatase 17 153 5.0E-55 T 11-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 AMK58_01090 97bbae950a1a3f27c8ef1619f909f05c 164 Pfam PF00692 dUTPase 22 152 1.1E-31 T 11-10-2018 IPR029054 dUTPase-like AMK58_01090 97bbae950a1a3f27c8ef1619f909f05c 164 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 8 153 35.125 T 11-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 AMK58_01090 97bbae950a1a3f27c8ef1619f909f05c 164 Gene3D G3DSA:2.70.40.10 8 153 1.6E-54 T 11-10-2018 IPR036157 dUTPase-like superfamily AMK58_01090 97bbae950a1a3f27c8ef1619f909f05c 164 SUPERFAMILY SSF51283 10 152 9.68E-53 T 11-10-2018 IPR036157 dUTPase-like superfamily AMK58_08320 87bf42b41067059376ec6249734783e8 436 PIRSF PIRSF000412 5 436 6.4E-170 T 11-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 AMK58_08320 87bf42b41067059376ec6249734783e8 436 Pfam PF00464 Serine hydroxymethyltransferase 20 397 8.2E-179 T 11-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 AMK58_08320 87bf42b41067059376ec6249734783e8 436 Gene3D G3DSA:3.90.1150.10 22 405 1.1E-183 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_08320 87bf42b41067059376ec6249734783e8 436 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 19 434 53.636 T 11-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 AMK58_08320 87bf42b41067059376ec6249734783e8 436 Gene3D G3DSA:3.40.640.10 49 300 1.1E-183 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_08320 87bf42b41067059376ec6249734783e8 436 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 234 250 - T 11-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 AMK58_08320 87bf42b41067059376ec6249734783e8 436 SUPERFAMILY SSF53383 15 434 9.35E-183 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_06080 701f1e3124bd5ba34b53578fa03b7db9 210 PRINTS PR00127 Clp protease catalytic subunit P signature 176 195 1.3E-51 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMK58_06080 701f1e3124bd5ba34b53578fa03b7db9 210 PRINTS PR00127 Clp protease catalytic subunit P signature 119 138 1.3E-51 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMK58_06080 701f1e3124bd5ba34b53578fa03b7db9 210 PRINTS PR00127 Clp protease catalytic subunit P signature 67 87 1.3E-51 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMK58_06080 701f1e3124bd5ba34b53578fa03b7db9 210 PRINTS PR00127 Clp protease catalytic subunit P signature 98 115 1.3E-51 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMK58_06080 701f1e3124bd5ba34b53578fa03b7db9 210 PRINTS PR00127 Clp protease catalytic subunit P signature 27 42 1.3E-51 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMK58_06080 701f1e3124bd5ba34b53578fa03b7db9 210 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 120 133 - T 11-10-2018 IPR033135 ClpP, histidine active site AMK58_06080 701f1e3124bd5ba34b53578fa03b7db9 210 Gene3D G3DSA:3.90.226.10 2 203 1.2E-86 T 11-10-2018 AMK58_06080 701f1e3124bd5ba34b53578fa03b7db9 210 SUPERFAMILY SSF52096 18 200 2.67E-74 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMK58_06080 701f1e3124bd5ba34b53578fa03b7db9 210 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 11 201 43.105 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMK58_06080 701f1e3124bd5ba34b53578fa03b7db9 210 Pfam PF00574 Clp protease 21 200 3.9E-88 T 11-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA AMK58_06080 701f1e3124bd5ba34b53578fa03b7db9 210 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 10 200 2.5E-98 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMK58_06080 701f1e3124bd5ba34b53578fa03b7db9 210 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 98 109 - T 11-10-2018 IPR018215 ClpP, Ser active site AMK58_19000 f252f6a0707b8c81113abb987244a000 708 SUPERFAMILY SSF55785 284 406 1.19E-19 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_19000 f252f6a0707b8c81113abb987244a000 708 SMART SM00091 299 366 3.4E-4 T 11-10-2018 IPR000014 PAS domain AMK58_19000 f252f6a0707b8c81113abb987244a000 708 SMART SM00091 49 117 4.5 T 11-10-2018 IPR000014 PAS domain AMK58_19000 f252f6a0707b8c81113abb987244a000 708 SMART SM00091 171 238 3.2E-4 T 11-10-2018 IPR000014 PAS domain AMK58_19000 f252f6a0707b8c81113abb987244a000 708 Pfam PF08447 PAS fold 195 281 2.7E-21 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 AMK58_19000 f252f6a0707b8c81113abb987244a000 708 Gene3D G3DSA:1.10.287.130 421 523 4.5E-19 T 11-10-2018 AMK58_19000 f252f6a0707b8c81113abb987244a000 708 Pfam PF00989 PAS fold 300 390 9.8E-8 T 11-10-2018 IPR013767 PAS fold GO:0006355 AMK58_19000 f252f6a0707b8c81113abb987244a000 708 SUPERFAMILY SSF55785 47 157 1.38E-11 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_19000 f252f6a0707b8c81113abb987244a000 708 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 574 683 1.3E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_19000 f252f6a0707b8c81113abb987244a000 708 Gene3D G3DSA:3.30.565.10 529 687 5.6E-38 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_19000 f252f6a0707b8c81113abb987244a000 708 SUPERFAMILY SSF47384 440 475 7.85E-5 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_19000 f252f6a0707b8c81113abb987244a000 708 SMART SM00086 245 287 4.0E-12 T 11-10-2018 IPR001610 PAC motif AMK58_19000 f252f6a0707b8c81113abb987244a000 708 SMART SM00086 369 409 0.013 T 11-10-2018 IPR001610 PAC motif AMK58_19000 f252f6a0707b8c81113abb987244a000 708 Pfam PF00512 His Kinase A (phospho-acceptor) domain 445 520 8.1E-7 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_19000 f252f6a0707b8c81113abb987244a000 708 SMART SM00387 571 684 2.9E-24 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_19000 f252f6a0707b8c81113abb987244a000 708 SUPERFAMILY SSF55785 177 289 1.47E-24 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_19000 f252f6a0707b8c81113abb987244a000 708 Gene3D G3DSA:3.30.450.20 288 406 1.6E-19 T 11-10-2018 AMK58_19000 f252f6a0707b8c81113abb987244a000 708 Pfam PF13188 PAS domain 49 107 0.0049 T 11-10-2018 IPR000014 PAS domain AMK58_19000 f252f6a0707b8c81113abb987244a000 708 Gene3D G3DSA:3.30.450.20 49 161 7.9E-12 T 11-10-2018 AMK58_19000 f252f6a0707b8c81113abb987244a000 708 SUPERFAMILY SSF55874 530 682 1.05E-36 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_19000 f252f6a0707b8c81113abb987244a000 708 PRINTS PR00344 Bacterial sensor protein C-terminal signature 630 640 8.3E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_19000 f252f6a0707b8c81113abb987244a000 708 PRINTS PR00344 Bacterial sensor protein C-terminal signature 612 626 8.3E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_19000 f252f6a0707b8c81113abb987244a000 708 PRINTS PR00344 Bacterial sensor protein C-terminal signature 643 661 8.3E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_19000 f252f6a0707b8c81113abb987244a000 708 PRINTS PR00344 Bacterial sensor protein C-terminal signature 668 681 8.3E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_19000 f252f6a0707b8c81113abb987244a000 708 Gene3D G3DSA:2.10.70.100 242 287 1.0E-14 T 11-10-2018 AMK58_19000 f252f6a0707b8c81113abb987244a000 708 Gene3D G3DSA:3.30.450.20 170 239 2.4E-15 T 11-10-2018 AMK58_19000 f252f6a0707b8c81113abb987244a000 708 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 193 293 2.2E-15 T 11-10-2018 IPR000014 PAS domain AMK58_19000 f252f6a0707b8c81113abb987244a000 708 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 298 415 1.9E-11 T 11-10-2018 IPR000014 PAS domain AMK58_01020 f3653604644696bf8b3b4340e248a590 756 Pfam PF00390 Malic enzyme, N-terminal domain 24 119 4.6E-21 T 11-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AMK58_01020 f3653604644696bf8b3b4340e248a590 756 Pfam PF01515 Phosphate acetyl/butaryl transferase 436 750 1.9E-81 T 11-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AMK58_01020 f3653604644696bf8b3b4340e248a590 756 Gene3D G3DSA:3.40.50.720 166 450 1.9E-86 T 11-10-2018 AMK58_01020 f3653604644696bf8b3b4340e248a590 756 Pfam PF03949 Malic enzyme, NAD binding domain 170 364 1.4E-24 T 11-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 AMK58_01020 f3653604644696bf8b3b4340e248a590 756 SMART SM01274 23 156 1.6E-79 T 11-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AMK58_01020 f3653604644696bf8b3b4340e248a590 756 Gene3D G3DSA:3.40.50.10950 451 750 9.1E-85 T 11-10-2018 AMK58_01020 f3653604644696bf8b3b4340e248a590 756 ProSitePatterns PS00331 Malic enzymes signature. 164 180 - T 11-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 AMK58_01020 f3653604644696bf8b3b4340e248a590 756 SMART SM00919 168 405 1.5E-143 T 11-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 AMK58_01020 f3653604644696bf8b3b4340e248a590 756 PIRSF PIRSF036684 3 755 0.0 T 11-10-2018 IPR012188 NAD(P)-dependent malic enzyme GO:0004470|GO:0006108|GO:0046872 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 AMK58_01020 f3653604644696bf8b3b4340e248a590 756 SUPERFAMILY SSF51735 168 457 6.76E-87 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_01020 f3653604644696bf8b3b4340e248a590 756 SUPERFAMILY SSF53223 14 166 2.52E-53 T 11-10-2018 AMK58_01020 f3653604644696bf8b3b4340e248a590 756 SUPERFAMILY SSF53659 435 752 9.46E-85 T 11-10-2018 AMK58_01020 f3653604644696bf8b3b4340e248a590 756 Gene3D G3DSA:3.40.50.10380 4 165 1.6E-64 T 11-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 AMK58_01020 f3653604644696bf8b3b4340e248a590 756 Gene3D G3DSA:3.40.50.10750 574 726 9.1E-85 T 11-10-2018 AMK58_02625 f0722147b52f7d75349e6c8b4591eaa6 315 TIGRFAM TIGR01001 metA: homoserine O-succinyltransferase 1 300 7.8E-105 T 11-10-2018 IPR005697 Homoserine O-succinyltransferase MetA GO:0005737|GO:0008899|GO:0019281 AMK58_02625 f0722147b52f7d75349e6c8b4591eaa6 315 Gene3D G3DSA:3.40.50.880 1 300 5.2E-119 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_02625 f0722147b52f7d75349e6c8b4591eaa6 315 Pfam PF04204 Homoserine O-succinyltransferase 2 298 2.1E-123 T 11-10-2018 IPR033752 MetA family AMK58_02625 f0722147b52f7d75349e6c8b4591eaa6 315 SUPERFAMILY SSF52317 18 296 4.06E-95 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_02625 f0722147b52f7d75349e6c8b4591eaa6 315 PIRSF PIRSF000450 1 307 1.3E-130 T 11-10-2018 IPR033752 MetA family AMK58_02625 f0722147b52f7d75349e6c8b4591eaa6 315 ProDom PD037892 HOMOSERINE O-SUCCINYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIOSYNTHESIS TRANSSUCCINYLASE HTS METHIONINE O- AMINO-ACID 36 292 5.0E-104 T 11-10-2018 AMK58_02625 f0722147b52f7d75349e6c8b4591eaa6 315 Hamap MF_00295 Homoserine O-succinyltransferase [metAS]. 31 298 39.641 T 11-10-2018 IPR033752 MetA family AMK58_23640 2b41bff06551e172a985d817810fea3e 656 SUPERFAMILY SSF58104 370 653 9.59E-40 T 11-10-2018 AMK58_23640 2b41bff06551e172a985d817810fea3e 656 Gene3D G3DSA:1.10.287.950 42 356 3.8E-47 T 11-10-2018 AMK58_23640 2b41bff06551e172a985d817810fea3e 656 Gene3D G3DSA:1.10.287.950 357 655 1.3E-37 T 11-10-2018 AMK58_23640 2b41bff06551e172a985d817810fea3e 656 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 463 616 3.1E-21 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_23640 2b41bff06551e172a985d817810fea3e 656 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 162 318 1.6E-29 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_23640 2b41bff06551e172a985d817810fea3e 656 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 483 510 4.5E-13 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_23640 2b41bff06551e172a985d817810fea3e 656 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 512 541 4.5E-13 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_23640 2b41bff06551e172a985d817810fea3e 656 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 146 161 4.5E-13 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_23640 2b41bff06551e172a985d817810fea3e 656 SUPERFAMILY SSF58104 72 355 2.7E-46 T 11-10-2018 AMK58_23640 2b41bff06551e172a985d817810fea3e 656 SMART SM00283 64 353 4.2E-31 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_23640 2b41bff06551e172a985d817810fea3e 656 SMART SM00283 371 653 2.5E-5 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_04285 230acbcc6e483d1daa4b9851242c4b8c 277 Pfam PF12849 PBP superfamily domain 31 252 1.8E-30 T 11-10-2018 IPR024370 PBP domain AMK58_04285 230acbcc6e483d1daa4b9851242c4b8c 277 Gene3D G3DSA:3.40.190.10 107 221 8.8E-94 T 11-10-2018 AMK58_04285 230acbcc6e483d1daa4b9851242c4b8c 277 Gene3D G3DSA:3.40.190.10 32 258 8.8E-94 T 11-10-2018 AMK58_04285 230acbcc6e483d1daa4b9851242c4b8c 277 SUPERFAMILY SSF53850 30 261 3.23E-35 T 11-10-2018 AMK58_13505 4c47cb54228448b0263337567b14934b 706 TIGRFAM TIGR04269 SAM_SPASM_FxsB: radical SAM/SPASM domain protein, FxsB family 6 364 1.7E-145 T 11-10-2018 IPR026335 Radical SAM/SPASM domain, FxsB family AMK58_13505 4c47cb54228448b0263337567b14934b 706 Pfam PF04055 Radical SAM superfamily 12 162 3.3E-14 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMK58_13505 4c47cb54228448b0263337567b14934b 706 Gene3D G3DSA:3.20.20.70 4 372 3.5E-63 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_13505 4c47cb54228448b0263337567b14934b 706 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 13 24 - T 11-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMK58_13505 4c47cb54228448b0263337567b14934b 706 Pfam PF13394 4Fe-4S single cluster domain 14 128 1.1E-7 T 11-10-2018 AMK58_13505 4c47cb54228448b0263337567b14934b 706 SUPERFAMILY SSF102114 8 335 6.02E-29 T 11-10-2018 AMK58_13505 4c47cb54228448b0263337567b14934b 706 TIGRFAM TIGR04267 mod_HExxH: HEXXH motif domain 492 697 5.7E-31 T 11-10-2018 IPR026337 HEXXH motif domain AMK58_16660 bf7f3f87207648e1c5c32f48c12882e3 412 SUPERFAMILY SSF159713 173 406 1.02E-50 T 11-10-2018 AMK58_16660 bf7f3f87207648e1c5c32f48c12882e3 412 Pfam PF13938 Putative heavy-metal chelation 180 263 1.8E-17 T 11-10-2018 IPR025251 Domain of unknown function DUF4213 AMK58_16660 bf7f3f87207648e1c5c32f48c12882e3 412 Pfam PF04016 Putative heavy-metal chelation 282 406 1.3E-29 T 11-10-2018 IPR007161 Putative heavy-metal chelation domain AMK58_16660 bf7f3f87207648e1c5c32f48c12882e3 412 Gene3D G3DSA:3.30.390.100 178 384 1.9E-47 T 11-10-2018 AMK58_16660 bf7f3f87207648e1c5c32f48c12882e3 412 Pfam PF10649 Protein of unknown function (DUF2478) 16 173 8.3E-55 T 11-10-2018 IPR018912 Protein of unknown function DUF2478 AMK58_16660 bf7f3f87207648e1c5c32f48c12882e3 412 Gene3D G3DSA:3.40.50.11590 276 378 1.9E-47 T 11-10-2018 AMK58_14350 71595e298f1127275f146e869dfd7c17 274 Gene3D G3DSA:3.40.50.1820 2 273 1.7E-83 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_14350 71595e298f1127275f146e869dfd7c17 274 Pfam PF00561 alpha/beta hydrolase fold 22 253 2.3E-23 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_14350 71595e298f1127275f146e869dfd7c17 274 PRINTS PR00111 Alpha/beta hydrolase fold signature 47 62 1.7E-11 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_14350 71595e298f1127275f146e869dfd7c17 274 PRINTS PR00111 Alpha/beta hydrolase fold signature 91 104 1.7E-11 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_14350 71595e298f1127275f146e869dfd7c17 274 PRINTS PR00111 Alpha/beta hydrolase fold signature 216 230 1.7E-11 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_14350 71595e298f1127275f146e869dfd7c17 274 SUPERFAMILY SSF53474 3 272 6.51E-66 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_13315 d9530a46559dc66bad1269e2b6c28bc7 503 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 80 410 4.1E-90 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain AMK58_13315 d9530a46559dc66bad1269e2b6c28bc7 503 SUPERFAMILY SSF53850 31 490 1.68E-128 T 11-10-2018 AMK58_13315 d9530a46559dc66bad1269e2b6c28bc7 503 Gene3D G3DSA:3.10.105.10 275 470 7.4E-48 T 11-10-2018 AMK58_13315 d9530a46559dc66bad1269e2b6c28bc7 503 Gene3D G3DSA:3.40.190.10 23 274 1.9E-71 T 11-10-2018 AMK58_13315 d9530a46559dc66bad1269e2b6c28bc7 503 PIRSF PIRSF002741 5 502 1.0E-104 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMK58_13315 d9530a46559dc66bad1269e2b6c28bc7 503 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 86 108 - T 11-10-2018 IPR023765 Solute-binding protein family 5, conserved site AMK58_23510 0aeb7d185b98d24e8af0460ab8f2649d 171 PIRSF PIRSF000709 2 93 8.4E-6 T 11-10-2018 AMK58_23510 0aeb7d185b98d24e8af0460ab8f2649d 171 SMART SM00855 4 146 2.5E-18 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMK58_23510 0aeb7d185b98d24e8af0460ab8f2649d 171 SUPERFAMILY SSF53254 3 168 9.01E-43 T 11-10-2018 IPR029033 Histidine phosphatase superfamily AMK58_23510 0aeb7d185b98d24e8af0460ab8f2649d 171 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 5 162 5.4E-37 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMK58_23510 0aeb7d185b98d24e8af0460ab8f2649d 171 Gene3D G3DSA:3.40.50.1240 1 168 4.2E-40 T 11-10-2018 IPR029033 Histidine phosphatase superfamily AMK58_08875 79027194729c4812c361586bc2bf5cc3 754 SMART SM00642 272 641 1.0E-6 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMK58_08875 79027194729c4812c361586bc2bf5cc3 754 SUPERFAMILY SSF51011 647 752 1.95E-37 T 11-10-2018 AMK58_08875 79027194729c4812c361586bc2bf5cc3 754 Pfam PF00128 Alpha amylase, catalytic domain 300 370 2.1E-8 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMK58_08875 79027194729c4812c361586bc2bf5cc3 754 Gene3D G3DSA:2.60.40.10 22 242 2.2E-70 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_08875 79027194729c4812c361586bc2bf5cc3 754 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 145 228 1.2E-22 T 11-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 AMK58_08875 79027194729c4812c361586bc2bf5cc3 754 Gene3D G3DSA:2.60.40.1180 647 753 2.7E-41 T 11-10-2018 IPR013780 Glycosyl hydrolase, all-beta AMK58_08875 79027194729c4812c361586bc2bf5cc3 754 SUPERFAMILY SSF81296 158 214 2.66E-10 T 11-10-2018 IPR014756 Immunoglobulin E-set AMK58_08875 79027194729c4812c361586bc2bf5cc3 754 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 129 749 1.1E-294 T 11-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 AMK58_08875 79027194729c4812c361586bc2bf5cc3 754 Gene3D G3DSA:3.20.20.80 256 636 1.0E-168 T 11-10-2018 AMK58_08875 79027194729c4812c361586bc2bf5cc3 754 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 652 751 5.9E-26 T 11-10-2018 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 AMK58_08875 79027194729c4812c361586bc2bf5cc3 754 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 121 752 45.997 T 11-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 AMK58_08875 79027194729c4812c361586bc2bf5cc3 754 SUPERFAMILY SSF81296 33 134 2.18E-15 T 11-10-2018 IPR014756 Immunoglobulin E-set AMK58_08875 79027194729c4812c361586bc2bf5cc3 754 SUPERFAMILY SSF51445 201 640 1.49E-117 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily AMK58_08875 79027194729c4812c361586bc2bf5cc3 754 PIRSF PIRSF000463 26 754 2.2E-295 T 11-10-2018 IPR037439 1,4-alpha-glucan-branching enzyme GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900|Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 AMK58_23050 560cd33b406d8723d47085265c03f969 457 Gene3D G3DSA:1.10.287.470 252 308 1.3E-8 T 11-10-2018 AMK58_23050 560cd33b406d8723d47085265c03f969 457 Gene3D G3DSA:2.40.50.100 309 345 1.3E-8 T 11-10-2018 AMK58_23050 560cd33b406d8723d47085265c03f969 457 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 38 456 6.5E-112 T 11-10-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 AMK58_23050 560cd33b406d8723d47085265c03f969 457 Gene3D G3DSA:1.10.287.470 110 184 8.6E-7 T 11-10-2018 AMK58_23050 560cd33b406d8723d47085265c03f969 457 Gene3D G3DSA:2.40.30.170 346 434 1.3E-8 T 11-10-2018 AMK58_23050 560cd33b406d8723d47085265c03f969 457 Pfam PF13437 HlyD family secretion protein 309 410 3.8E-12 T 11-10-2018 AMK58_23050 560cd33b406d8723d47085265c03f969 457 Gene3D G3DSA:2.40.50.100 84 187 8.6E-7 T 11-10-2018 AMK58_23050 560cd33b406d8723d47085265c03f969 457 Pfam PF13533 Biotin-lipoyl like 85 121 1.4E-7 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain AMK58_23050 560cd33b406d8723d47085265c03f969 457 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 321 342 8.1E-46 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMK58_23050 560cd33b406d8723d47085265c03f969 457 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 87 107 8.1E-46 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMK58_23050 560cd33b406d8723d47085265c03f969 457 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 421 436 8.1E-46 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMK58_23050 560cd33b406d8723d47085265c03f969 457 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 378 401 8.1E-46 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMK58_23050 560cd33b406d8723d47085265c03f969 457 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 436 456 8.1E-46 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMK58_23050 560cd33b406d8723d47085265c03f969 457 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 45 68 8.1E-46 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMK58_23050 560cd33b406d8723d47085265c03f969 457 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 354 378 8.1E-46 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMK58_23595 3f732bbbfd64c9e117cb817bca144d2c 617 SMART SM00387 506 602 1.3E-6 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_23595 3f732bbbfd64c9e117cb817bca144d2c 617 SUPERFAMILY SSF55874 475 598 1.1E-11 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_23595 3f732bbbfd64c9e117cb817bca144d2c 617 SMART SM00086 212 252 0.0083 T 11-10-2018 IPR001610 PAC motif AMK58_23595 3f732bbbfd64c9e117cb817bca144d2c 617 Pfam PF08448 PAS fold 16 111 5.3E-8 T 11-10-2018 IPR013656 PAS fold-4 AMK58_23595 3f732bbbfd64c9e117cb817bca144d2c 617 Pfam PF08448 PAS fold 277 390 3.4E-9 T 11-10-2018 IPR013656 PAS fold-4 AMK58_23595 3f732bbbfd64c9e117cb817bca144d2c 617 Gene3D G3DSA:3.30.450.20 8 134 1.4E-22 T 11-10-2018 AMK58_23595 3f732bbbfd64c9e117cb817bca144d2c 617 SUPERFAMILY SSF55785 11 112 2.09E-15 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_23595 3f732bbbfd64c9e117cb817bca144d2c 617 SUPERFAMILY SSF55785 248 376 2.09E-8 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_23595 3f732bbbfd64c9e117cb817bca144d2c 617 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 139 259 5.3E-23 T 11-10-2018 IPR000014 PAS domain AMK58_23595 3f732bbbfd64c9e117cb817bca144d2c 617 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 12 135 6.2E-9 T 11-10-2018 IPR000014 PAS domain AMK58_23595 3f732bbbfd64c9e117cb817bca144d2c 617 Pfam PF00989 PAS fold 143 249 2.0E-12 T 11-10-2018 IPR013767 PAS fold GO:0006355 AMK58_23595 3f732bbbfd64c9e117cb817bca144d2c 617 SUPERFAMILY SSF55785 138 250 8.72E-21 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_23595 3f732bbbfd64c9e117cb817bca144d2c 617 Pfam PF07568 Histidine kinase 411 484 5.0E-23 T 11-10-2018 IPR011495 Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain AMK58_23595 3f732bbbfd64c9e117cb817bca144d2c 617 Gene3D G3DSA:3.30.450.20 138 255 1.4E-24 T 11-10-2018 AMK58_23595 3f732bbbfd64c9e117cb817bca144d2c 617 Gene3D G3DSA:3.30.450.20 262 401 6.6E-13 T 11-10-2018 AMK58_23595 3f732bbbfd64c9e117cb817bca144d2c 617 Gene3D G3DSA:3.30.565.10 467 605 5.2E-24 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_23595 3f732bbbfd64c9e117cb817bca144d2c 617 SMART SM00091 142 207 4.6E-8 T 11-10-2018 IPR000014 PAS domain AMK58_23595 3f732bbbfd64c9e117cb817bca144d2c 617 SMART SM00091 10 76 1.8E-5 T 11-10-2018 IPR000014 PAS domain AMK58_23545 583c598e2314968cf51581605f1fe21e 447 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 228 243 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AMK58_23545 583c598e2314968cf51581605f1fe21e 447 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 166 179 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AMK58_23545 583c598e2314968cf51581605f1fe21e 447 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 355 364 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site AMK58_23545 583c598e2314968cf51581605f1fe21e 447 Gene3D G3DSA:3.40.50.300 135 312 1.0E-60 T 11-10-2018 AMK58_23545 583c598e2314968cf51581605f1fe21e 447 Gene3D G3DSA:1.10.10.60 389 441 2.0E-13 T 11-10-2018 AMK58_23545 583c598e2314968cf51581605f1fe21e 447 Pfam PF00072 Response regulator receiver domain 3 112 1.2E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_23545 583c598e2314968cf51581605f1fe21e 447 Gene3D G3DSA:3.40.50.2300 1 134 1.4E-36 T 11-10-2018 AMK58_23545 583c598e2314968cf51581605f1fe21e 447 SUPERFAMILY SSF52172 1 185 4.27E-42 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_23545 583c598e2314968cf51581605f1fe21e 447 SUPERFAMILY SSF46689 387 439 1.88E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_23545 583c598e2314968cf51581605f1fe21e 447 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 420 440 8.6E-8 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMK58_23545 583c598e2314968cf51581605f1fe21e 447 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 403 420 8.6E-8 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMK58_23545 583c598e2314968cf51581605f1fe21e 447 Pfam PF00158 Sigma-54 interaction domain 142 308 3.7E-65 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AMK58_23545 583c598e2314968cf51581605f1fe21e 447 SMART SM00448 1 112 9.4E-31 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_23545 583c598e2314968cf51581605f1fe21e 447 SMART SM00382 162 305 8.0E-5 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_23545 583c598e2314968cf51581605f1fe21e 447 Gene3D G3DSA:1.10.8.60 313 378 7.4E-20 T 11-10-2018 AMK58_23545 583c598e2314968cf51581605f1fe21e 447 Pfam PF02954 Bacterial regulatory protein, Fis family 398 435 2.6E-12 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMK58_23545 583c598e2314968cf51581605f1fe21e 447 SUPERFAMILY SSF52540 142 374 6.63E-71 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_17840 9f2cb794be2e0c13386e640a6dce1e19 151 Gene3D G3DSA:3.90.470.20 1 145 3.1E-31 T 11-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 AMK58_17840 9f2cb794be2e0c13386e640a6dce1e19 151 SUPERFAMILY SSF56214 1 134 3.79E-25 T 11-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 AMK58_17840 9f2cb794be2e0c13386e640a6dce1e19 151 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 3 136 24.148 T 11-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 AMK58_17840 9f2cb794be2e0c13386e640a6dce1e19 151 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 8 106 8.0E-25 T 11-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 AMK58_17840 9f2cb794be2e0c13386e640a6dce1e19 151 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 1 136 6.0E-25 T 11-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 AMK58_17840 9f2cb794be2e0c13386e640a6dce1e19 151 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 4 103 4.6E-17 T 11-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 AMK58_17840 9f2cb794be2e0c13386e640a6dce1e19 151 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 1 136 9.1E-21 T 11-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 AMK58_01420 b1c7957cf1de0bbd420fc004d5c097bb 663 Pfam PF01578 Cytochrome C assembly protein 89 296 1.5E-52 T 11-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 AMK58_01420 b1c7957cf1de0bbd420fc004d5c097bb 663 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 394 413 1.7E-60 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMK58_01420 b1c7957cf1de0bbd420fc004d5c097bb 663 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 635 648 1.7E-60 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMK58_01420 b1c7957cf1de0bbd420fc004d5c097bb 663 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 113 136 1.7E-60 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMK58_01420 b1c7957cf1de0bbd420fc004d5c097bb 663 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 351 368 1.7E-60 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMK58_01420 b1c7957cf1de0bbd420fc004d5c097bb 663 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 4 28 1.7E-60 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMK58_01420 b1c7957cf1de0bbd420fc004d5c097bb 663 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 189 204 1.7E-60 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMK58_01420 b1c7957cf1de0bbd420fc004d5c097bb 663 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 313 328 1.7E-60 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMK58_01420 b1c7957cf1de0bbd420fc004d5c097bb 663 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 310 329 8.1E-95 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMK58_01420 b1c7957cf1de0bbd420fc004d5c097bb 663 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 159 181 8.1E-95 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMK58_01420 b1c7957cf1de0bbd420fc004d5c097bb 663 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 244 264 8.1E-95 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMK58_01420 b1c7957cf1de0bbd420fc004d5c097bb 663 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 210 236 8.1E-95 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMK58_01420 b1c7957cf1de0bbd420fc004d5c097bb 663 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 80 106 8.1E-95 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMK58_01420 b1c7957cf1de0bbd420fc004d5c097bb 663 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 274 294 8.1E-95 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMK58_01420 b1c7957cf1de0bbd420fc004d5c097bb 663 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 132 149 8.1E-95 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMK58_01420 b1c7957cf1de0bbd420fc004d5c097bb 663 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 294 310 8.1E-95 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMK58_01420 b1c7957cf1de0bbd420fc004d5c097bb 663 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 53 645 2.4E-201 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMK58_01420 b1c7957cf1de0bbd420fc004d5c097bb 663 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 315 642 2.5E-123 T 11-10-2018 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal AMK58_18020 79e0c8b5b19c897f497f9ef37b1e0571 592 SUPERFAMILY SSF48452 8 256 4.56E-24 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_18020 79e0c8b5b19c897f497f9ef37b1e0571 592 SMART SM00028 35 68 140.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18020 79e0c8b5b19c897f497f9ef37b1e0571 592 SMART SM00028 103 136 100.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18020 79e0c8b5b19c897f497f9ef37b1e0571 592 SMART SM00028 171 204 150.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18020 79e0c8b5b19c897f497f9ef37b1e0571 592 SMART SM00028 69 102 4.4E-4 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18020 79e0c8b5b19c897f497f9ef37b1e0571 592 Gene3D G3DSA:1.25.40.10 164 274 1.7E-5 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_18020 79e0c8b5b19c897f497f9ef37b1e0571 592 Gene3D G3DSA:1.25.40.10 4 163 7.0E-26 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_18020 79e0c8b5b19c897f497f9ef37b1e0571 592 Pfam PF14559 Tetratricopeptide repeat 13 75 6.8E-7 T 11-10-2018 AMK58_03890 bc5cbdc06f70f2d1d3601be66144e870 588 SUPERFAMILY SSF52490 15 211 1.06E-69 T 11-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 AMK58_03890 bc5cbdc06f70f2d1d3601be66144e870 588 ProSitePatterns PS01134 FtsZ protein signature 1. 47 81 - T 11-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 AMK58_03890 bc5cbdc06f70f2d1d3601be66144e870 588 Gene3D G3DSA:3.40.50.1440 8 223 4.1E-78 T 11-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 AMK58_03890 bc5cbdc06f70f2d1d3601be66144e870 588 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 16 177 1.8E-38 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AMK58_03890 bc5cbdc06f70f2d1d3601be66144e870 588 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 12 343 37.55 T 11-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 AMK58_03890 bc5cbdc06f70f2d1d3601be66144e870 588 ProSitePatterns PS01135 FtsZ protein signature 2. 100 121 - T 11-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 AMK58_03890 bc5cbdc06f70f2d1d3601be66144e870 588 Gene3D G3DSA:3.30.1330.20 228 336 2.0E-38 T 11-10-2018 IPR037103 Tubulin/FtsZ, C-terminal domain superfamily Reactome: R-HSA-380320 AMK58_03890 bc5cbdc06f70f2d1d3601be66144e870 588 PRINTS PR00423 Cell division protein FtsZ signature 129 150 6.8E-50 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AMK58_03890 bc5cbdc06f70f2d1d3601be66144e870 588 PRINTS PR00423 Cell division protein FtsZ signature 101 121 6.8E-50 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AMK58_03890 bc5cbdc06f70f2d1d3601be66144e870 588 PRINTS PR00423 Cell division protein FtsZ signature 192 214 6.8E-50 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AMK58_03890 bc5cbdc06f70f2d1d3601be66144e870 588 PRINTS PR00423 Cell division protein FtsZ signature 215 236 6.8E-50 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AMK58_03890 bc5cbdc06f70f2d1d3601be66144e870 588 Pfam PF12327 FtsZ family, C-terminal domain 225 320 7.8E-39 T 11-10-2018 IPR024757 Cell division protein FtsZ, C-terminal AMK58_03890 bc5cbdc06f70f2d1d3601be66144e870 588 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 10 325 1.9E-121 T 11-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 AMK58_03890 bc5cbdc06f70f2d1d3601be66144e870 588 SUPERFAMILY SSF55307 207 321 3.2E-43 T 11-10-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 AMK58_03890 bc5cbdc06f70f2d1d3601be66144e870 588 SMART SM00865 210 328 3.6E-58 T 11-10-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-380320 AMK58_03890 bc5cbdc06f70f2d1d3601be66144e870 588 SMART SM00864 16 208 1.3E-106 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AMK58_03915 6333819131736ab6a3da4159ed704eb8 471 Gene3D G3DSA:3.40.50.720 10 96 2.6E-31 T 11-10-2018 AMK58_03915 6333819131736ab6a3da4159ed704eb8 471 SUPERFAMILY SSF51984 10 95 8.63E-28 T 11-10-2018 AMK58_03915 6333819131736ab6a3da4159ed704eb8 471 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 11 459 3.2E-157 T 11-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMK58_03915 6333819131736ab6a3da4159ed704eb8 471 Pfam PF02875 Mur ligase family, glutamate ligase domain 319 404 6.5E-21 T 11-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 AMK58_03915 6333819131736ab6a3da4159ed704eb8 471 SUPERFAMILY SSF53623 94 317 1.96E-65 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMK58_03915 6333819131736ab6a3da4159ed704eb8 471 SUPERFAMILY SSF53244 318 461 2.56E-47 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMK58_03915 6333819131736ab6a3da4159ed704eb8 471 Pfam PF08245 Mur ligase middle domain 113 298 7.0E-26 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 AMK58_03915 6333819131736ab6a3da4159ed704eb8 471 Gene3D G3DSA:3.90.190.20 317 467 2.5E-52 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMK58_03915 6333819131736ab6a3da4159ed704eb8 471 Gene3D G3DSA:3.40.1190.10 97 316 3.9E-71 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMK58_03915 6333819131736ab6a3da4159ed704eb8 471 Pfam PF01225 Mur ligase family, catalytic domain 10 108 5.9E-29 T 11-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 AMK58_03915 6333819131736ab6a3da4159ed704eb8 471 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 8 466 41.0 T 11-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMK58_20400 230b9e1a6f26743de347b8c66b9dafcf 413 SMART SM00316 44 123 1.8E-7 T 11-10-2018 IPR022967 RNA-binding domain, S1 AMK58_20400 230b9e1a6f26743de347b8c66b9dafcf 413 SUPERFAMILY SSF50249 46 129 1.6E-11 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_20400 230b9e1a6f26743de347b8c66b9dafcf 413 Gene3D G3DSA:2.40.50.140 38 129 1.6E-19 T 11-10-2018 AMK58_20400 230b9e1a6f26743de347b8c66b9dafcf 413 Pfam PF10150 Ribonuclease E/G family 125 394 6.1E-71 T 11-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 AMK58_02860 8faf854ceed7673c90d508530e85a26f 779 Pfam PF13175 AAA ATPase domain 257 474 5.6E-18 T 11-10-2018 AMK58_02860 8faf854ceed7673c90d508530e85a26f 779 Pfam PF13175 AAA ATPase domain 39 105 7.7E-13 T 11-10-2018 AMK58_02860 8faf854ceed7673c90d508530e85a26f 779 SUPERFAMILY SSF52540 39 475 5.02E-7 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_02860 8faf854ceed7673c90d508530e85a26f 779 Gene3D G3DSA:3.40.50.300 33 109 2.8E-8 T 11-10-2018 AMK58_17775 a33d0d28261f783535e9c8dd8f9263c2 1040 SUPERFAMILY SSF82866 291 489 1.1E-50 T 11-10-2018 AMK58_17775 a33d0d28261f783535e9c8dd8f9263c2 1040 Gene3D G3DSA:3.30.70.1430 555 647 0.0 T 11-10-2018 AMK58_17775 a33d0d28261f783535e9c8dd8f9263c2 1040 Gene3D G3DSA:3.30.70.1440 648 855 0.0 T 11-10-2018 AMK58_17775 a33d0d28261f783535e9c8dd8f9263c2 1040 Gene3D G3DSA:3.30.70.1320 134 325 0.0 T 11-10-2018 AMK58_17775 a33d0d28261f783535e9c8dd8f9263c2 1040 SUPERFAMILY SSF82693 553 648 6.28E-23 T 11-10-2018 AMK58_17775 a33d0d28261f783535e9c8dd8f9263c2 1040 SUPERFAMILY SSF82693 135 323 5.65E-27 T 11-10-2018 AMK58_17775 a33d0d28261f783535e9c8dd8f9263c2 1040 Gene3D G3DSA:1.20.1640.10 10 500 0.0 T 11-10-2018 AMK58_17775 a33d0d28261f783535e9c8dd8f9263c2 1040 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 3.7E-81 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_17775 a33d0d28261f783535e9c8dd8f9263c2 1040 PRINTS PR00702 Acriflavin resistance protein family signature 603 617 3.7E-81 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_17775 a33d0d28261f783535e9c8dd8f9263c2 1040 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 3.7E-81 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_17775 a33d0d28261f783535e9c8dd8f9263c2 1040 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 3.7E-81 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_17775 a33d0d28261f783535e9c8dd8f9263c2 1040 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 3.7E-81 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_17775 a33d0d28261f783535e9c8dd8f9263c2 1040 PRINTS PR00702 Acriflavin resistance protein family signature 437 460 3.7E-81 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_17775 a33d0d28261f783535e9c8dd8f9263c2 1040 PRINTS PR00702 Acriflavin resistance protein family signature 329 352 3.7E-81 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_17775 a33d0d28261f783535e9c8dd8f9263c2 1040 PRINTS PR00702 Acriflavin resistance protein family signature 540 557 3.7E-81 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_17775 a33d0d28261f783535e9c8dd8f9263c2 1040 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 3.7E-81 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_17775 a33d0d28261f783535e9c8dd8f9263c2 1040 Gene3D G3DSA:1.20.1640.10 501 1012 0.0 T 11-10-2018 AMK58_17775 a33d0d28261f783535e9c8dd8f9263c2 1040 Pfam PF00873 AcrB/AcrD/AcrF family 4 1015 0.0 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_17775 a33d0d28261f783535e9c8dd8f9263c2 1040 SUPERFAMILY SSF82714 183 264 2.09E-18 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_17775 a33d0d28261f783535e9c8dd8f9263c2 1040 Gene3D G3DSA:3.30.2090.10 178 268 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_17775 a33d0d28261f783535e9c8dd8f9263c2 1040 SUPERFAMILY SSF82693 40 134 3.4E-25 T 11-10-2018 AMK58_17775 a33d0d28261f783535e9c8dd8f9263c2 1040 SUPERFAMILY SSF82866 795 1019 1.96E-48 T 11-10-2018 AMK58_17775 a33d0d28261f783535e9c8dd8f9263c2 1040 Gene3D G3DSA:3.30.2090.10 698 798 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_17775 a33d0d28261f783535e9c8dd8f9263c2 1040 SUPERFAMILY SSF82714 699 794 2.49E-15 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_17775 a33d0d28261f783535e9c8dd8f9263c2 1040 Gene3D G3DSA:3.30.70.1430 40 806 0.0 T 11-10-2018 AMK58_06035 81a7d67d9cb121e3a8aea430d4ff3a9f 426 SUPERFAMILY SSF53067 180 420 4.62E-28 T 11-10-2018 AMK58_06035 81a7d67d9cb121e3a8aea430d4ff3a9f 426 Pfam PF00012 Hsp70 protein 100 231 3.5E-9 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMK58_06035 81a7d67d9cb121e3a8aea430d4ff3a9f 426 Gene3D G3DSA:3.90.640.10 303 354 7.4E-11 T 11-10-2018 AMK58_06035 81a7d67d9cb121e3a8aea430d4ff3a9f 426 Gene3D G3DSA:3.30.420.40 355 401 7.4E-11 T 11-10-2018 AMK58_06035 81a7d67d9cb121e3a8aea430d4ff3a9f 426 Gene3D G3DSA:3.30.420.40 179 222 3.5E-32 T 11-10-2018 AMK58_06035 81a7d67d9cb121e3a8aea430d4ff3a9f 426 SUPERFAMILY SSF53067 2 175 2.1E-27 T 11-10-2018 AMK58_06035 81a7d67d9cb121e3a8aea430d4ff3a9f 426 Gene3D G3DSA:3.30.420.40 5 178 3.5E-32 T 11-10-2018 AMK58_25020 2ef7d90d84bc01fd4659fa67564a3322 338 SUPERFAMILY SSF55073 179 334 1.88E-36 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_25020 2ef7d90d84bc01fd4659fa67564a3322 338 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 170 334 5.2E-35 T 11-10-2018 IPR000160 GGDEF domain AMK58_25020 2ef7d90d84bc01fd4659fa67564a3322 338 SMART SM00065 18 164 4.0E-7 T 11-10-2018 IPR003018 GAF domain GO:0005515 AMK58_25020 2ef7d90d84bc01fd4659fa67564a3322 338 Gene3D G3DSA:3.30.450.40 3 162 3.6E-12 T 11-10-2018 IPR029016 GAF-like domain superfamily AMK58_25020 2ef7d90d84bc01fd4659fa67564a3322 338 SUPERFAMILY SSF55781 22 167 6.11E-14 T 11-10-2018 AMK58_25020 2ef7d90d84bc01fd4659fa67564a3322 338 Gene3D G3DSA:3.30.70.270 163 337 1.8E-44 T 11-10-2018 AMK58_25020 2ef7d90d84bc01fd4659fa67564a3322 338 SMART SM00267 163 337 5.9E-37 T 11-10-2018 IPR000160 GGDEF domain AMK58_25020 2ef7d90d84bc01fd4659fa67564a3322 338 Pfam PF00990 Diguanylate cyclase, GGDEF domain 175 334 1.4E-34 T 11-10-2018 IPR000160 GGDEF domain AMK58_18530 54867db2d28e43cd9ff02935982ced06 455 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 415 432 1.1E-29 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AMK58_18530 54867db2d28e43cd9ff02935982ced06 455 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 241 251 1.1E-29 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AMK58_18530 54867db2d28e43cd9ff02935982ced06 455 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 212 226 1.1E-29 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AMK58_18530 54867db2d28e43cd9ff02935982ced06 455 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 310 322 1.1E-29 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AMK58_18530 54867db2d28e43cd9ff02935982ced06 455 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 360 376 1.1E-29 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AMK58_18530 54867db2d28e43cd9ff02935982ced06 455 Pfam PF01189 16S rRNA methyltransferase RsmB/F 230 429 1.4E-51 T 11-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 AMK58_18530 54867db2d28e43cd9ff02935982ced06 455 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 309 320 - T 11-10-2018 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 AMK58_18530 54867db2d28e43cd9ff02935982ced06 455 SUPERFAMILY SSF53335 125 432 3.35E-74 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_18530 54867db2d28e43cd9ff02935982ced06 455 Gene3D G3DSA:3.40.50.150 130 432 4.6E-87 T 11-10-2018 AMK58_20070 cf830486f583caec6eaba80d5d9d4909 656 SUPERFAMILY SSF53955 471 622 8.94E-42 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily AMK58_20070 cf830486f583caec6eaba80d5d9d4909 656 SUPERFAMILY SSF48435 62 445 4.71E-23 T 11-10-2018 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 AMK58_20070 cf830486f583caec6eaba80d5d9d4909 656 Gene3D G3DSA:1.10.530.10 467 624 1.6E-42 T 11-10-2018 AMK58_20070 cf830486f583caec6eaba80d5d9d4909 656 Pfam PF01464 Transglycosylase SLT domain 470 575 1.1E-25 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 AMK58_20070 cf830486f583caec6eaba80d5d9d4909 656 Gene3D G3DSA:1.25.40.10 183 362 1.3E-10 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_20070 cf830486f583caec6eaba80d5d9d4909 656 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 480 508 - T 11-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 AMK58_20275 502f1879baccc68f97f1ad8301cac705 305 SUPERFAMILY SSF53850 88 296 1.38E-36 T 11-10-2018 AMK58_20275 502f1879baccc68f97f1ad8301cac705 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.1E-22 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_20275 502f1879baccc68f97f1ad8301cac705 305 Pfam PF03466 LysR substrate binding domain 88 292 2.6E-41 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_20275 502f1879baccc68f97f1ad8301cac705 305 Gene3D G3DSA:1.10.10.10 1 90 1.5E-30 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_20275 502f1879baccc68f97f1ad8301cac705 305 Gene3D G3DSA:3.40.190.10 166 271 3.9E-64 T 11-10-2018 AMK58_20275 502f1879baccc68f97f1ad8301cac705 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.3E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_20275 502f1879baccc68f97f1ad8301cac705 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.3E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_20275 502f1879baccc68f97f1ad8301cac705 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.3E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_20275 502f1879baccc68f97f1ad8301cac705 305 Gene3D G3DSA:3.40.190.10 91 288 3.9E-64 T 11-10-2018 AMK58_20275 502f1879baccc68f97f1ad8301cac705 305 SUPERFAMILY SSF46785 1 83 7.71E-24 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_22155 23cb91416f32b91d1e085319d41bad1f 238 Pfam PF07729 FCD domain 86 207 7.1E-24 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_22155 23cb91416f32b91d1e085319d41bad1f 238 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 65 1.5E-6 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_22155 23cb91416f32b91d1e085319d41bad1f 238 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 35 49 1.5E-6 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_22155 23cb91416f32b91d1e085319d41bad1f 238 SUPERFAMILY SSF48008 82 216 3.92E-20 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_22155 23cb91416f32b91d1e085319d41bad1f 238 SMART SM00895 85 209 3.7E-13 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_22155 23cb91416f32b91d1e085319d41bad1f 238 Gene3D G3DSA:1.20.120.530 81 223 2.7E-24 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_22155 23cb91416f32b91d1e085319d41bad1f 238 Pfam PF00392 Bacterial regulatory proteins, gntR family 16 75 2.8E-17 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_22155 23cb91416f32b91d1e085319d41bad1f 238 Gene3D G3DSA:1.10.10.10 9 76 1.9E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_22155 23cb91416f32b91d1e085319d41bad1f 238 SMART SM00345 17 75 1.1E-18 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_22155 23cb91416f32b91d1e085319d41bad1f 238 SUPERFAMILY SSF46785 7 79 6.48E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_12670 7fb8502ad199926c3507a4ff2d35c932 1278 SUPERFAMILY SSF55874 554 723 6.02E-45 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_12670 7fb8502ad199926c3507a4ff2d35c932 1278 SMART SM00091 361 427 5.5E-12 T 11-10-2018 IPR000014 PAS domain AMK58_12670 7fb8502ad199926c3507a4ff2d35c932 1278 SUPERFAMILY SSF55785 372 489 4.04E-25 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_12670 7fb8502ad199926c3507a4ff2d35c932 1278 Gene3D G3DSA:3.30.450.20 41 191 7.2E-29 T 11-10-2018 AMK58_12670 7fb8502ad199926c3507a4ff2d35c932 1278 Gene3D G3DSA:3.30.450.20 347 475 3.6E-26 T 11-10-2018 AMK58_12670 7fb8502ad199926c3507a4ff2d35c932 1278 SMART SM00388 500 565 3.9E-25 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_12670 7fb8502ad199926c3507a4ff2d35c932 1278 Pfam PF00512 His Kinase A (phospho-acceptor) domain 500 565 4.1E-20 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_12670 7fb8502ad199926c3507a4ff2d35c932 1278 Gene3D G3DSA:1.20.120.160 1070 1181 5.3E-12 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMK58_12670 7fb8502ad199926c3507a4ff2d35c932 1278 SUPERFAMILY SSF52172 759 890 7.26E-25 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_12670 7fb8502ad199926c3507a4ff2d35c932 1278 Gene3D G3DSA:1.10.287.130 476 563 8.7E-30 T 11-10-2018 AMK58_12670 7fb8502ad199926c3507a4ff2d35c932 1278 Gene3D G3DSA:3.30.450.20 194 289 7.1E-17 T 11-10-2018 AMK58_12670 7fb8502ad199926c3507a4ff2d35c932 1278 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 361 487 1.5E-19 T 11-10-2018 IPR000014 PAS domain AMK58_12670 7fb8502ad199926c3507a4ff2d35c932 1278 Pfam PF00989 PAS fold 362 477 3.2E-17 T 11-10-2018 IPR013767 PAS fold GO:0006355 AMK58_12670 7fb8502ad199926c3507a4ff2d35c932 1278 SUPERFAMILY SSF52172 924 1050 1.11E-38 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_12670 7fb8502ad199926c3507a4ff2d35c932 1278 SUPERFAMILY SSF47384 485 566 9.02E-22 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_12670 7fb8502ad199926c3507a4ff2d35c932 1278 Gene3D G3DSA:3.30.565.10 564 727 3.5E-50 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_12670 7fb8502ad199926c3507a4ff2d35c932 1278 SMART SM00387 612 728 1.4E-37 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_12670 7fb8502ad199926c3507a4ff2d35c932 1278 SUPERFAMILY SSF47226 1022 1172 4.84E-17 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMK58_12670 7fb8502ad199926c3507a4ff2d35c932 1278 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 612 725 1.4E-31 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_12670 7fb8502ad199926c3507a4ff2d35c932 1278 Pfam PF00072 Response regulator receiver domain 763 884 3.0E-15 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_12670 7fb8502ad199926c3507a4ff2d35c932 1278 Pfam PF00072 Response regulator receiver domain 927 1039 1.0E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_12670 7fb8502ad199926c3507a4ff2d35c932 1278 PRINTS PR00344 Bacterial sensor protein C-terminal signature 671 681 1.7E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_12670 7fb8502ad199926c3507a4ff2d35c932 1278 PRINTS PR00344 Bacterial sensor protein C-terminal signature 712 725 1.7E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_12670 7fb8502ad199926c3507a4ff2d35c932 1278 PRINTS PR00344 Bacterial sensor protein C-terminal signature 653 667 1.7E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_12670 7fb8502ad199926c3507a4ff2d35c932 1278 PRINTS PR00344 Bacterial sensor protein C-terminal signature 688 706 1.7E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_12670 7fb8502ad199926c3507a4ff2d35c932 1278 SMART SM00448 924 1039 9.3E-40 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_12670 7fb8502ad199926c3507a4ff2d35c932 1278 SMART SM00448 761 884 6.6E-21 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_12670 7fb8502ad199926c3507a4ff2d35c932 1278 Gene3D G3DSA:3.40.50.12740 761 906 2.5E-25 T 11-10-2018 AMK58_12670 7fb8502ad199926c3507a4ff2d35c932 1278 Gene3D G3DSA:3.40.50.12740 923 1059 9.9E-45 T 11-10-2018 AMK58_24540 59ac9c1efd8412489d2b40eb39fe3932 346 SMART SM00849 41 258 7.2E-21 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMK58_24540 59ac9c1efd8412489d2b40eb39fe3932 346 Gene3D G3DSA:3.60.15.10 21 285 5.6E-51 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMK58_24540 59ac9c1efd8412489d2b40eb39fe3932 346 Pfam PF00753 Metallo-beta-lactamase superfamily 40 241 4.7E-20 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMK58_24540 59ac9c1efd8412489d2b40eb39fe3932 346 SUPERFAMILY SSF56281 10 343 3.14E-65 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMK58_24540 59ac9c1efd8412489d2b40eb39fe3932 346 Gene3D G3DSA:1.10.10.10 291 337 1.1E-5 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_25780 70647a2c606cb266404d583d22530a5a 381 Gene3D G3DSA:3.40.50.2300 152 286 2.0E-108 T 11-10-2018 AMK58_25780 70647a2c606cb266404d583d22530a5a 381 Gene3D G3DSA:3.40.50.2300 38 355 2.0E-108 T 11-10-2018 AMK58_25780 70647a2c606cb266404d583d22530a5a 381 SUPERFAMILY SSF53822 34 378 4.12E-88 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMK58_25780 70647a2c606cb266404d583d22530a5a 381 Pfam PF13458 Periplasmic binding protein 34 373 4.7E-63 T 11-10-2018 IPR028081 Leucine-binding protein domain AMK58_03800 4db14a277b10aa6c47aee24ca9ae6ec8 229 SMART SM00421 152 209 1.0E-23 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_03800 4db14a277b10aa6c47aee24ca9ae6ec8 229 Pfam PF00196 Bacterial regulatory proteins, luxR family 154 209 1.6E-20 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_03800 4db14a277b10aa6c47aee24ca9ae6ec8 229 Pfam PF00072 Response regulator receiver domain 6 118 1.6E-11 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_03800 4db14a277b10aa6c47aee24ca9ae6ec8 229 SUPERFAMILY SSF46894 145 214 2.99E-20 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMK58_03800 4db14a277b10aa6c47aee24ca9ae6ec8 229 Gene3D G3DSA:3.40.50.12740 4 214 1.1E-47 T 11-10-2018 AMK58_03800 4db14a277b10aa6c47aee24ca9ae6ec8 229 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 169 185 1.2E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_03800 4db14a277b10aa6c47aee24ca9ae6ec8 229 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 169 1.2E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_03800 4db14a277b10aa6c47aee24ca9ae6ec8 229 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 185 197 1.2E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_03800 4db14a277b10aa6c47aee24ca9ae6ec8 229 ProSitePatterns PS00622 LuxR-type HTH domain signature. 169 196 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_03800 4db14a277b10aa6c47aee24ca9ae6ec8 229 SUPERFAMILY SSF52172 1 122 1.21E-19 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_03800 4db14a277b10aa6c47aee24ca9ae6ec8 229 SMART SM00448 4 118 1.2E-6 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_06795 500c8a41aab523668a67c6f6cdebfd8a 815 Pfam PF04851 Type III restriction enzyme, res subunit 165 344 2.1E-41 T 11-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 AMK58_06795 500c8a41aab523668a67c6f6cdebfd8a 815 SMART SM00487 162 379 1.1E-20 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMK58_06795 500c8a41aab523668a67c6f6cdebfd8a 815 Gene3D G3DSA:3.90.1570.30 1 141 3.1E-52 T 11-10-2018 AMK58_06795 500c8a41aab523668a67c6f6cdebfd8a 815 Gene3D G3DSA:3.40.50.300 145 361 2.9E-69 T 11-10-2018 AMK58_06795 500c8a41aab523668a67c6f6cdebfd8a 815 SUPERFAMILY SSF52540 150 383 3.08E-35 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_06795 500c8a41aab523668a67c6f6cdebfd8a 815 Pfam PF08463 EcoEI R protein C-terminal 657 811 5.0E-27 T 11-10-2018 IPR013670 EcoEI R protein C-terminal domain GO:0003677|GO:0003824|GO:0006304 AMK58_06795 500c8a41aab523668a67c6f6cdebfd8a 815 SUPERFAMILY SSF52540 300 550 1.74E-16 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_06795 500c8a41aab523668a67c6f6cdebfd8a 815 Pfam PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) 32 113 9.1E-8 T 11-10-2018 IPR029464 Type I restriction enzyme R protein, N-terminal domain AMK58_06795 500c8a41aab523668a67c6f6cdebfd8a 815 Gene3D G3DSA:3.40.50.300 362 587 1.7E-52 T 11-10-2018 AMK58_00395 1eb2737a518a9cf82e6cce93ac45b2ed 324 SUPERFAMILY SSF51735 114 265 1.49E-48 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_00395 1eb2737a518a9cf82e6cce93ac45b2ed 324 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 92 9.1E-10 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMK58_00395 1eb2737a518a9cf82e6cce93ac45b2ed 324 Pfam PF00107 Zinc-binding dehydrogenase 151 256 1.2E-28 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMK58_00395 1eb2737a518a9cf82e6cce93ac45b2ed 324 Gene3D G3DSA:3.40.50.720 123 268 5.1E-117 T 11-10-2018 AMK58_00395 1eb2737a518a9cf82e6cce93ac45b2ed 324 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 140 161 - T 11-10-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 AMK58_00395 1eb2737a518a9cf82e6cce93ac45b2ed 324 Gene3D G3DSA:3.90.180.10 12 318 5.1E-117 T 11-10-2018 AMK58_00395 1eb2737a518a9cf82e6cce93ac45b2ed 324 SUPERFAMILY SSF50129 3 144 1.43E-39 T 11-10-2018 IPR011032 GroES-like superfamily AMK58_00395 1eb2737a518a9cf82e6cce93ac45b2ed 324 SMART SM00829 11 322 9.6E-31 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMK58_22225 cc29625d499d969ecd4a8bf9b15c9048 256 Gene3D G3DSA:3.90.226.10 4 230 4.5E-67 T 11-10-2018 AMK58_22225 cc29625d499d969ecd4a8bf9b15c9048 256 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 252 3.0E-46 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMK58_22225 cc29625d499d969ecd4a8bf9b15c9048 256 SUPERFAMILY SSF52096 2 253 1.81E-67 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMK58_15280 f7bb81ce4e5db1f38bdd96b448e5b155 97 Gene3D G3DSA:3.30.70.1060 3 93 5.8E-15 T 11-10-2018 AMK58_15280 f7bb81ce4e5db1f38bdd96b448e5b155 97 SUPERFAMILY SSF54909 1 89 3.75E-15 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel AMK58_15280 f7bb81ce4e5db1f38bdd96b448e5b155 97 Pfam PF03795 YCII-related domain 4 87 2.2E-10 T 11-10-2018 IPR005545 YCII-related AMK58_06370 1551c9229c6930e2ad748573c40e72e1 405 Pfam PF00994 Probable molybdopterin binding domain 179 313 2.6E-17 T 11-10-2018 IPR001453 MoaB/Mog domain AMK58_06370 1551c9229c6930e2ad748573c40e72e1 405 SMART SM00852 179 314 1.2E-31 T 11-10-2018 IPR001453 MoaB/Mog domain AMK58_06370 1551c9229c6930e2ad748573c40e72e1 405 Pfam PF03453 MoeA N-terminal region (domain I and II) 3 165 8.2E-43 T 11-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMK58_06370 1551c9229c6930e2ad748573c40e72e1 405 SUPERFAMILY SSF53218 174 318 1.7E-34 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily AMK58_06370 1551c9229c6930e2ad748573c40e72e1 405 SUPERFAMILY SSF63867 324 400 3.53E-20 T 11-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMK58_06370 1551c9229c6930e2ad748573c40e72e1 405 Gene3D G3DSA:3.90.105.10 21 173 1.7E-120 T 11-10-2018 AMK58_06370 1551c9229c6930e2ad748573c40e72e1 405 SUPERFAMILY SSF63882 1 174 9.55E-54 T 11-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMK58_06370 1551c9229c6930e2ad748573c40e72e1 405 Gene3D G3DSA:2.40.340.10 323 393 1.7E-120 T 11-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMK58_06370 1551c9229c6930e2ad748573c40e72e1 405 Gene3D G3DSA:2.170.190.11 44 140 1.7E-120 T 11-10-2018 AMK58_06370 1551c9229c6930e2ad748573c40e72e1 405 Gene3D G3DSA:3.40.980.10 174 322 1.7E-120 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily AMK58_06370 1551c9229c6930e2ad748573c40e72e1 405 Pfam PF03454 MoeA C-terminal region (domain IV) 326 398 3.8E-18 T 11-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMK58_21565 b20cf5b93214a409eedea4d37e847e76 266 Gene3D G3DSA:3.40.50.12740 126 263 4.2E-28 T 11-10-2018 AMK58_21565 b20cf5b93214a409eedea4d37e847e76 266 SUPERFAMILY SSF52172 1 111 5.98E-5 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_21565 b20cf5b93214a409eedea4d37e847e76 266 Pfam PF00072 Response regulator receiver domain 129 238 8.0E-21 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_21565 b20cf5b93214a409eedea4d37e847e76 266 SUPERFAMILY SSF52172 126 256 1.32E-28 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_21565 b20cf5b93214a409eedea4d37e847e76 266 SMART SM00448 127 242 4.3E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_24785 ed95151b5d8f7de1e1d0dae8768eb977 355 SMART SM00448 1 115 1.6E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_24785 ed95151b5d8f7de1e1d0dae8768eb977 355 SMART SM00471 164 301 8.5E-10 T 11-10-2018 IPR003607 HD/PDEase domain AMK58_24785 ed95151b5d8f7de1e1d0dae8768eb977 355 Gene3D G3DSA:3.40.50.2300 1 137 2.6E-29 T 11-10-2018 AMK58_24785 ed95151b5d8f7de1e1d0dae8768eb977 355 Pfam PF13487 HD domain 219 282 1.7E-17 T 11-10-2018 AMK58_24785 ed95151b5d8f7de1e1d0dae8768eb977 355 SUPERFAMILY SSF109604 155 330 1.26E-40 T 11-10-2018 AMK58_24785 ed95151b5d8f7de1e1d0dae8768eb977 355 Pfam PF00072 Response regulator receiver domain 3 115 3.8E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_24785 ed95151b5d8f7de1e1d0dae8768eb977 355 Gene3D G3DSA:1.10.3210.10 142 344 7.8E-73 T 11-10-2018 AMK58_24785 ed95151b5d8f7de1e1d0dae8768eb977 355 SUPERFAMILY SSF52172 2 156 6.69E-33 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_26610 69786a945a1db48e6743e84da6791e0b 917 Gene3D G3DSA:3.40.228.10 374 572 3.5E-176 T 11-10-2018 AMK58_26610 69786a945a1db48e6743e84da6791e0b 917 SUPERFAMILY SSF53706 224 754 2.22E-196 T 11-10-2018 AMK58_26610 69786a945a1db48e6743e84da6791e0b 917 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 3 81 3.0E-16 T 11-10-2018 AMK58_26610 69786a945a1db48e6743e84da6791e0b 917 TIGRFAM TIGR01591 Fdh-alpha: formate dehydrogenase, alpha subunit 231 913 2.0E-220 T 11-10-2018 IPR006478 Formate dehydrogenase, alpha subunit GO:0008863|GO:0015942|GO:0055114 KEGG: 00630+1.17.1.9|KEGG: 00680+1.17.1.9|MetaCyc: PWY-1881|MetaCyc: PWY-5497|MetaCyc: PWY-6696|MetaCyc: PWY-7985 AMK58_26610 69786a945a1db48e6743e84da6791e0b 917 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 664 681 - T 11-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 AMK58_26610 69786a945a1db48e6743e84da6791e0b 917 PIRSF PIRSF036643 1 917 0.0 T 11-10-2018 AMK58_26610 69786a945a1db48e6743e84da6791e0b 917 Gene3D G3DSA:2.40.40.20 794 915 5.4E-41 T 11-10-2018 AMK58_26610 69786a945a1db48e6743e84da6791e0b 917 Gene3D G3DSA:3.40.50.740 307 760 3.5E-176 T 11-10-2018 AMK58_26610 69786a945a1db48e6743e84da6791e0b 917 SUPERFAMILY SSF54292 4 88 7.42E-14 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMK58_26610 69786a945a1db48e6743e84da6791e0b 917 Gene3D G3DSA:3.10.20.740 6 107 4.9E-20 T 11-10-2018 AMK58_26610 69786a945a1db48e6743e84da6791e0b 917 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 192 203 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMK58_26610 69786a945a1db48e6743e84da6791e0b 917 SUPERFAMILY SSF50692 770 916 3.16E-42 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily AMK58_26610 69786a945a1db48e6743e84da6791e0b 917 Pfam PF00384 Molybdopterin oxidoreductase 281 717 2.5E-84 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_26610 69786a945a1db48e6743e84da6791e0b 917 Pfam PF01568 Molydopterin dinucleotide binding domain 805 908 1.7E-27 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 AMK58_26610 69786a945a1db48e6743e84da6791e0b 917 Gene3D G3DSA:3.30.70.20 129 210 2.5E-19 T 11-10-2018 AMK58_26610 69786a945a1db48e6743e84da6791e0b 917 Gene3D G3DSA:2.20.25.90 226 278 9.1E-21 T 11-10-2018 AMK58_26610 69786a945a1db48e6743e84da6791e0b 917 SUPERFAMILY SSF54862 81 214 1.09E-26 T 11-10-2018 AMK58_26610 69786a945a1db48e6743e84da6791e0b 917 SMART SM00926 225 278 9.6E-18 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_26610 69786a945a1db48e6743e84da6791e0b 917 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 226 278 3.9E-14 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_26610 69786a945a1db48e6743e84da6791e0b 917 Pfam PF13187 4Fe-4S dicluster domain 148 206 1.1E-6 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMK58_20950 d284341dee366127cef1bba0d1425314 185 SUPERFAMILY SSF48613 4 180 2.59E-34 T 11-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 AMK58_20950 d284341dee366127cef1bba0d1425314 185 Gene3D G3DSA:1.20.910.10 2 185 1.5E-37 T 11-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 AMK58_26665 d7d65ea71aa26d7d93945a45e9120731 513 ProSitePatterns PS00211 ABC transporters family signature. 404 418 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_26665 d7d65ea71aa26d7d93945a45e9120731 513 SUPERFAMILY SSF52540 256 488 1.07E-40 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_26665 d7d65ea71aa26d7d93945a45e9120731 513 SMART SM00382 32 219 1.5E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_26665 d7d65ea71aa26d7d93945a45e9120731 513 SMART SM00382 284 491 3.2 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_26665 d7d65ea71aa26d7d93945a45e9120731 513 Pfam PF00005 ABC transporter 275 431 3.6E-14 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_26665 d7d65ea71aa26d7d93945a45e9120731 513 Pfam PF00005 ABC transporter 24 172 6.3E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_26665 d7d65ea71aa26d7d93945a45e9120731 513 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_26665 d7d65ea71aa26d7d93945a45e9120731 513 SUPERFAMILY SSF52540 7 229 2.89E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_26665 d7d65ea71aa26d7d93945a45e9120731 513 Gene3D G3DSA:3.40.50.300 250 494 4.8E-38 T 11-10-2018 AMK58_26665 d7d65ea71aa26d7d93945a45e9120731 513 Gene3D G3DSA:3.40.50.300 2 241 3.1E-58 T 11-10-2018 AMK58_18215 54f168317723fda28fee323a7546e1cf 264 Pfam PF00072 Response regulator receiver domain 138 246 3.3E-14 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_18215 54f168317723fda28fee323a7546e1cf 264 Gene3D G3DSA:3.40.50.2300 135 259 5.6E-33 T 11-10-2018 AMK58_18215 54f168317723fda28fee323a7546e1cf 264 SMART SM00448 136 246 1.1E-20 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_18215 54f168317723fda28fee323a7546e1cf 264 Gene3D G3DSA:1.20.140.160 3 134 4.2E-29 T 11-10-2018 AMK58_18215 54f168317723fda28fee323a7546e1cf 264 SUPERFAMILY SSF52172 137 250 5.69E-24 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_18215 54f168317723fda28fee323a7546e1cf 264 SUPERFAMILY SSF88659 80 134 4.36E-5 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMK58_07945 8d290243a3ecc146c5f456a04631e20d 417 Gene3D G3DSA:3.40.980.10 186 337 7.5E-132 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily AMK58_07945 8d290243a3ecc146c5f456a04631e20d 417 Pfam PF03453 MoeA N-terminal region (domain I and II) 17 178 1.0E-43 T 11-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMK58_07945 8d290243a3ecc146c5f456a04631e20d 417 Gene3D G3DSA:3.90.105.10 36 185 7.5E-132 T 11-10-2018 AMK58_07945 8d290243a3ecc146c5f456a04631e20d 417 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 188 324 2.0E-27 T 11-10-2018 IPR001453 MoaB/Mog domain AMK58_07945 8d290243a3ecc146c5f456a04631e20d 417 Gene3D G3DSA:2.40.340.10 338 408 7.5E-132 T 11-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMK58_07945 8d290243a3ecc146c5f456a04631e20d 417 SMART SM00852 191 328 2.3E-42 T 11-10-2018 IPR001453 MoaB/Mog domain AMK58_07945 8d290243a3ecc146c5f456a04631e20d 417 Gene3D G3DSA:2.170.190.11 59 152 7.5E-132 T 11-10-2018 AMK58_07945 8d290243a3ecc146c5f456a04631e20d 417 SUPERFAMILY SSF53218 188 332 3.66E-42 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily AMK58_07945 8d290243a3ecc146c5f456a04631e20d 417 Pfam PF03454 MoeA C-terminal region (domain IV) 342 413 1.1E-14 T 11-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMK58_07945 8d290243a3ecc146c5f456a04631e20d 417 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 264 297 - T 11-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 AMK58_07945 8d290243a3ecc146c5f456a04631e20d 417 Pfam PF00994 Probable molybdopterin binding domain 191 326 3.0E-26 T 11-10-2018 IPR001453 MoaB/Mog domain AMK58_07945 8d290243a3ecc146c5f456a04631e20d 417 SUPERFAMILY SSF63882 15 185 3.66E-53 T 11-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMK58_07945 8d290243a3ecc146c5f456a04631e20d 417 SUPERFAMILY SSF63867 337 415 1.96E-19 T 11-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMK58_03895 6fcfe45deae8e0466129cc26e80bc259 420 Gene3D G3DSA:3.30.420.40 203 361 6.6E-105 T 11-10-2018 AMK58_03895 6fcfe45deae8e0466129cc26e80bc259 420 SUPERFAMILY SSF53067 205 386 1.0E-43 T 11-10-2018 AMK58_03895 6fcfe45deae8e0466129cc26e80bc259 420 SMART SM00842 18 202 3.8E-84 T 11-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 AMK58_03895 6fcfe45deae8e0466129cc26e80bc259 420 Gene3D G3DSA:3.30.420.40 21 381 6.6E-105 T 11-10-2018 AMK58_03895 6fcfe45deae8e0466129cc26e80bc259 420 Pfam PF02491 SHS2 domain inserted in FTSA 96 168 6.5E-23 T 11-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 AMK58_03895 6fcfe45deae8e0466129cc26e80bc259 420 SUPERFAMILY SSF53067 17 203 7.38E-53 T 11-10-2018 AMK58_03895 6fcfe45deae8e0466129cc26e80bc259 420 PIRSF PIRSF003101 8 414 2.8E-133 T 11-10-2018 IPR020823 Cell division protein FtsA AMK58_03895 6fcfe45deae8e0466129cc26e80bc259 420 Gene3D G3DSA:3.30.1490.110 93 175 6.6E-105 T 11-10-2018 AMK58_03895 6fcfe45deae8e0466129cc26e80bc259 420 Pfam PF14450 Cell division protein FtsA 213 383 6.1E-23 T 11-10-2018 AMK58_03895 6fcfe45deae8e0466129cc26e80bc259 420 Hamap MF_02033 Cell division protein FtsA [ftsA]. 14 420 26.594 T 11-10-2018 IPR020823 Cell division protein FtsA AMK58_03895 6fcfe45deae8e0466129cc26e80bc259 420 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 18 386 1.2E-113 T 11-10-2018 IPR020823 Cell division protein FtsA AMK58_03895 6fcfe45deae8e0466129cc26e80bc259 420 Gene3D G3DSA:3.90.640.10 241 309 6.6E-105 T 11-10-2018 AMK58_03895 6fcfe45deae8e0466129cc26e80bc259 420 Pfam PF14450 Cell division protein FtsA 19 201 2.8E-9 T 11-10-2018 AMK58_14835 0866378e336100fbc7284429b595927a 1149 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 6 331 2.2E-37 T 11-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G AMK58_14835 0866378e336100fbc7284429b595927a 1149 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 790 1130 2.9E-31 T 11-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G AMK58_14835 0866378e336100fbc7284429b595927a 1149 Pfam PF00460 Flagella basal body rod protein 8 37 3.1E-7 T 11-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 AMK58_14835 0866378e336100fbc7284429b595927a 1149 SUPERFAMILY SSF117143 80 1109 4.18E-28 T 11-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like AMK58_14835 0866378e336100fbc7284429b595927a 1149 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 1070 1147 3.0E-19 T 11-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain AMK58_04255 f8667a54131cb6f4ef9fd134bc6a1a5b 108 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 25 104 5.0E-36 T 11-10-2018 IPR003769 Adaptor protein ClpS, core GO:0030163 Reactome: R-HSA-983168 AMK58_04255 f8667a54131cb6f4ef9fd134bc6a1a5b 108 SUPERFAMILY SSF54736 23 107 3.35E-33 T 11-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like AMK58_04255 f8667a54131cb6f4ef9fd134bc6a1a5b 108 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 12 103 29.144 T 11-10-2018 IPR022935 ATP-dependent Clp protease adaptor protein ClpS AMK58_04255 f8667a54131cb6f4ef9fd134bc6a1a5b 108 Gene3D G3DSA:3.30.1390.10 4 108 2.2E-44 T 11-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like AMK58_26825 a260a92caf649ed8f13ab0de9f7d835f 278 SMART SM00052 17 263 3.1E-102 T 11-10-2018 IPR001633 EAL domain AMK58_26825 a260a92caf649ed8f13ab0de9f7d835f 278 Gene3D G3DSA:3.20.20.450 20 274 4.5E-93 T 11-10-2018 IPR035919 EAL domain superfamily AMK58_26825 a260a92caf649ed8f13ab0de9f7d835f 278 Pfam PF00563 EAL domain 24 258 1.4E-75 T 11-10-2018 IPR001633 EAL domain AMK58_26825 a260a92caf649ed8f13ab0de9f7d835f 278 SUPERFAMILY SSF141868 23 270 2.35E-85 T 11-10-2018 IPR035919 EAL domain superfamily AMK58_02880 da9f120a32855d5413ab66f2d6963c72 320 SUPERFAMILY SSF46689 269 317 3.32E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_02880 da9f120a32855d5413ab66f2d6963c72 320 SMART SM00342 233 316 1.1E-26 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMK58_02880 da9f120a32855d5413ab66f2d6963c72 320 Gene3D G3DSA:1.10.10.60 218 320 7.7E-24 T 11-10-2018 AMK58_02880 da9f120a32855d5413ab66f2d6963c72 320 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 270 312 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMK58_02880 da9f120a32855d5413ab66f2d6963c72 320 SUPERFAMILY SSF46689 216 267 2.55E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_02880 da9f120a32855d5413ab66f2d6963c72 320 Pfam PF12852 Cupin 12 201 3.2E-31 T 11-10-2018 IPR032783 AraC-type transcription regulator, ligand-binding domain AMK58_02880 da9f120a32855d5413ab66f2d6963c72 320 Pfam PF12833 Helix-turn-helix domain 239 316 1.1E-17 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMK58_05225 142ee0d1afa425883fae3fe6e0a81650 407 SUPERFAMILY SSF55729 8 288 2.64E-44 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_05225 142ee0d1afa425883fae3fe6e0a81650 407 Pfam PF13527 Acetyltransferase (GNAT) domain 10 131 1.1E-16 T 11-10-2018 AMK58_05225 142ee0d1afa425883fae3fe6e0a81650 407 Gene3D G3DSA:3.30.1050.10 291 397 2.5E-23 T 11-10-2018 IPR036527 SCP2 sterol-binding domain superfamily AMK58_05225 142ee0d1afa425883fae3fe6e0a81650 407 Gene3D G3DSA:3.40.630.30 132 285 2.2E-22 T 11-10-2018 AMK58_05225 142ee0d1afa425883fae3fe6e0a81650 407 Pfam PF13530 Sterol carrier protein domain 180 404 7.7E-40 T 11-10-2018 IPR025559 Enhanced intracellular survival protein domain AMK58_05225 142ee0d1afa425883fae3fe6e0a81650 407 Gene3D G3DSA:3.40.630.30 6 131 3.9E-26 T 11-10-2018 AMK58_05225 142ee0d1afa425883fae3fe6e0a81650 407 SUPERFAMILY SSF55718 289 407 1.18E-20 T 11-10-2018 IPR036527 SCP2 sterol-binding domain superfamily AMK58_26085 ea68ddbdfeaab03a27a90854d44c7b8a 562 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 295 394 4.8E-16 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMK58_26085 ea68ddbdfeaab03a27a90854d44c7b8a 562 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 178 288 4.5E-30 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMK58_26085 ea68ddbdfeaab03a27a90854d44c7b8a 562 SUPERFAMILY SSF56645 176 420 2.75E-67 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMK58_26085 ea68ddbdfeaab03a27a90854d44c7b8a 562 Gene3D G3DSA:1.20.140.10 416 561 2.6E-43 T 11-10-2018 AMK58_26085 ea68ddbdfeaab03a27a90854d44c7b8a 562 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 409 557 5.4E-39 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMK58_26085 ea68ddbdfeaab03a27a90854d44c7b8a 562 SUPERFAMILY SSF47203 408 559 4.99E-46 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMK58_26085 ea68ddbdfeaab03a27a90854d44c7b8a 562 Gene3D G3DSA:1.10.540.10 171 289 2.9E-33 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMK58_26085 ea68ddbdfeaab03a27a90854d44c7b8a 562 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 516 535 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMK58_26085 ea68ddbdfeaab03a27a90854d44c7b8a 562 Gene3D G3DSA:2.40.110.10 292 415 4.8E-30 T 11-10-2018 AMK58_23895 9f542bbc102d0cbcb1d31c35e1e1fb4a 1136 SUPERFAMILY SSF56801 622 1130 1.03E-100 T 11-10-2018 AMK58_23895 9f542bbc102d0cbcb1d31c35e1e1fb4a 1136 Pfam PF01553 Acyltransferase 438 559 5.1E-14 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMK58_23895 9f542bbc102d0cbcb1d31c35e1e1fb4a 1136 Pfam PF00501 AMP-binding enzyme 638 1035 4.1E-72 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMK58_23895 9f542bbc102d0cbcb1d31c35e1e1fb4a 1136 SUPERFAMILY SSF69593 429 614 7.85E-22 T 11-10-2018 AMK58_23895 9f542bbc102d0cbcb1d31c35e1e1fb4a 1136 Pfam PF07690 Major Facilitator Superfamily 16 311 5.5E-11 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMK58_23895 9f542bbc102d0cbcb1d31c35e1e1fb4a 1136 SUPERFAMILY SSF103473 9 417 1.44E-21 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_23895 9f542bbc102d0cbcb1d31c35e1e1fb4a 1136 Gene3D G3DSA:3.30.300.30 1032 1134 7.4E-10 T 11-10-2018 AMK58_23895 9f542bbc102d0cbcb1d31c35e1e1fb4a 1136 Gene3D G3DSA:1.20.1250.20 7 419 1.5E-22 T 11-10-2018 AMK58_23895 9f542bbc102d0cbcb1d31c35e1e1fb4a 1136 SMART SM00563 453 562 3.9E-22 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMK58_23895 9f542bbc102d0cbcb1d31c35e1e1fb4a 1136 ProSitePatterns PS00455 Putative AMP-binding domain signature. 795 806 - T 11-10-2018 IPR020845 AMP-binding, conserved site AMK58_23895 9f542bbc102d0cbcb1d31c35e1e1fb4a 1136 Gene3D G3DSA:3.40.50.12780 625 1030 1.2E-79 T 11-10-2018 AMK58_05830 7e3d00ac6708c196600619954cc8c1e5 445 SUPERFAMILY SSF52540 19 224 6.69E-42 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_05830 7e3d00ac6708c196600619954cc8c1e5 445 Pfam PF16193 AAA C-terminal domain 190 266 7.4E-19 T 11-10-2018 IPR032423 AAA C-terminal domain AMK58_05830 7e3d00ac6708c196600619954cc8c1e5 445 Gene3D G3DSA:1.20.272.10 240 344 5.7E-45 T 11-10-2018 AMK58_05830 7e3d00ac6708c196600619954cc8c1e5 445 SUPERFAMILY SSF48019 252 436 6.23E-75 T 11-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 AMK58_05830 7e3d00ac6708c196600619954cc8c1e5 445 Pfam PF12002 MgsA AAA+ ATPase C terminal 267 432 2.3E-70 T 11-10-2018 IPR021886 MgsA AAA+ ATPase C-terminal AMK58_05830 7e3d00ac6708c196600619954cc8c1e5 445 Gene3D G3DSA:3.40.50.300 14 169 7.1E-40 T 11-10-2018 AMK58_05830 7e3d00ac6708c196600619954cc8c1e5 445 SMART SM00382 55 171 2.3E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_05830 7e3d00ac6708c196600619954cc8c1e5 445 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 59 167 9.9E-14 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMK58_05830 7e3d00ac6708c196600619954cc8c1e5 445 Gene3D G3DSA:1.10.3710.10 345 443 1.1E-32 T 11-10-2018 AMK58_08915 c3dfbdf4fade52362ddc22278fcd1078 398 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 239 386 6.7E-36 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMK58_08915 c3dfbdf4fade52362ddc22278fcd1078 398 Gene3D G3DSA:2.40.110.10 129 244 4.7E-33 T 11-10-2018 AMK58_08915 c3dfbdf4fade52362ddc22278fcd1078 398 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 130 226 6.6E-20 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMK58_08915 c3dfbdf4fade52362ddc22278fcd1078 398 SUPERFAMILY SSF56645 1 250 8.64E-60 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMK58_08915 c3dfbdf4fade52362ddc22278fcd1078 398 SUPERFAMILY SSF47203 238 390 2.74E-45 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMK58_08915 c3dfbdf4fade52362ddc22278fcd1078 398 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 10 125 4.0E-18 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMK58_08915 c3dfbdf4fade52362ddc22278fcd1078 398 Gene3D G3DSA:1.20.140.10 245 390 2.2E-38 T 11-10-2018 AMK58_08915 c3dfbdf4fade52362ddc22278fcd1078 398 Gene3D G3DSA:1.10.540.10 1 128 1.4E-38 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMK58_25280 83b5884baeac9a39c70fa1f13a442ed2 566 PRINTS PR01009 Flagellar M-ring protein signature 258 276 1.7E-31 T 11-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AMK58_25280 83b5884baeac9a39c70fa1f13a442ed2 566 PRINTS PR01009 Flagellar M-ring protein signature 114 132 1.7E-31 T 11-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AMK58_25280 83b5884baeac9a39c70fa1f13a442ed2 566 PRINTS PR01009 Flagellar M-ring protein signature 189 207 1.7E-31 T 11-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AMK58_25280 83b5884baeac9a39c70fa1f13a442ed2 566 PRINTS PR01009 Flagellar M-ring protein signature 334 358 1.7E-31 T 11-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AMK58_25280 83b5884baeac9a39c70fa1f13a442ed2 566 PRINTS PR01009 Flagellar M-ring protein signature 146 160 1.7E-31 T 11-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AMK58_25280 83b5884baeac9a39c70fa1f13a442ed2 566 Pfam PF01514 Secretory protein of YscJ/FliF family 24 212 2.9E-61 T 11-10-2018 IPR006182 Secretory protein YscJ/FliF AMK58_25280 83b5884baeac9a39c70fa1f13a442ed2 566 Pfam PF08345 Flagellar M-ring protein C-terminal 247 410 1.9E-39 T 11-10-2018 IPR013556 Flagellar M-ring C-terminal AMK58_25280 83b5884baeac9a39c70fa1f13a442ed2 566 PIRSF PIRSF004862 2 565 5.2E-129 T 11-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AMK58_25280 83b5884baeac9a39c70fa1f13a442ed2 566 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 21 472 1.2E-81 T 11-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AMK58_25280 83b5884baeac9a39c70fa1f13a442ed2 566 Gene3D G3DSA:3.30.300.30 115 214 6.4E-11 T 11-10-2018 AMK58_05865 4288f71886cfaafbcdf3a111b8ed5222 232 Gene3D G3DSA:3.30.2180.30 1 61 1.3E-21 T 11-10-2018 AMK58_05865 4288f71886cfaafbcdf3a111b8ed5222 232 Pfam PF07542 ATP12 chaperone protein 2 120 4.4E-37 T 11-10-2018 IPR011419 ATP12, ATP synthase F1-assembly protein GO:0043461 AMK58_05865 4288f71886cfaafbcdf3a111b8ed5222 232 Gene3D G3DSA:1.10.3580.10 62 232 6.8E-62 T 11-10-2018 IPR023335 ATP12 orthogonal Bundle domain superfamily AMK58_05865 4288f71886cfaafbcdf3a111b8ed5222 232 SUPERFAMILY SSF160909 1 227 3.79E-78 T 11-10-2018 AMK58_11650 532516808ccd6edc5adaaa1fb0b9a03b 92 Gene3D G3DSA:2.40.50.100 21 91 1.2E-31 T 11-10-2018 AMK58_11650 532516808ccd6edc5adaaa1fb0b9a03b 92 Pfam PF01016 Ribosomal L27 protein 2 81 5.0E-39 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_11650 532516808ccd6edc5adaaa1fb0b9a03b 92 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 78 2.0E-15 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_11650 532516808ccd6edc5adaaa1fb0b9a03b 92 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 11-10-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_11650 532516808ccd6edc5adaaa1fb0b9a03b 92 PRINTS PR00063 Ribosomal protein L27 signature 4 28 8.5E-37 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_11650 532516808ccd6edc5adaaa1fb0b9a03b 92 PRINTS PR00063 Ribosomal protein L27 signature 54 78 8.5E-37 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_11650 532516808ccd6edc5adaaa1fb0b9a03b 92 PRINTS PR00063 Ribosomal protein L27 signature 29 53 8.5E-37 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_11650 532516808ccd6edc5adaaa1fb0b9a03b 92 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 84 28.449 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_11650 532516808ccd6edc5adaaa1fb0b9a03b 92 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 81 8.0E-40 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_11650 532516808ccd6edc5adaaa1fb0b9a03b 92 SUPERFAMILY SSF110324 2 81 8.02E-35 T 11-10-2018 AMK58_21750 26eee895a16f777e815c171f661ed345 395 SUPERFAMILY SSF81464 13 111 3.76E-21 T 11-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_21750 26eee895a16f777e815c171f661ed345 395 Gene3D G3DSA:1.10.287.90 22 106 3.6E-30 T 11-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_21750 26eee895a16f777e815c171f661ed345 395 SUPERFAMILY SSF49503 123 282 1.12E-48 T 11-10-2018 IPR008972 Cupredoxin AMK58_21750 26eee895a16f777e815c171f661ed345 395 TIGRFAM TIGR01433 CyoA: ubiquinol oxidase, subunit II 8 241 4.4E-104 T 11-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 AMK58_21750 26eee895a16f777e815c171f661ed345 395 Pfam PF06481 COX Aromatic Rich Motif 241 286 4.4E-19 T 11-10-2018 IPR010514 COX aromatic rich motif GO:0008827|GO:0016021|GO:0022900|GO:0055114 AMK58_21750 26eee895a16f777e815c171f661ed345 395 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 152 222 1.1E-6 T 11-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_21750 26eee895a16f777e815c171f661ed345 395 Gene3D G3DSA:2.60.40.420 107 283 1.4E-49 T 11-10-2018 IPR008972 Cupredoxin AMK58_18595 40f6bf0917c80ba93437d4ac7c9a389e 213 SUPERFAMILY SSF48008 78 206 5.75E-18 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_18595 40f6bf0917c80ba93437d4ac7c9a389e 213 Gene3D G3DSA:1.10.10.10 1 69 8.6E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_18595 40f6bf0917c80ba93437d4ac7c9a389e 213 Pfam PF07729 FCD domain 78 198 2.1E-18 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_18595 40f6bf0917c80ba93437d4ac7c9a389e 213 Pfam PF00392 Bacterial regulatory proteins, gntR family 5 67 2.5E-16 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_18595 40f6bf0917c80ba93437d4ac7c9a389e 213 SMART SM00895 77 201 3.9E-13 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_18595 40f6bf0917c80ba93437d4ac7c9a389e 213 Gene3D G3DSA:1.20.120.530 76 206 1.7E-17 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_18595 40f6bf0917c80ba93437d4ac7c9a389e 213 SUPERFAMILY SSF46785 4 71 7.12E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_18595 40f6bf0917c80ba93437d4ac7c9a389e 213 SMART SM00345 9 67 1.4E-15 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_27470 1b4e21df018a8538eacb41a81dffd6d3 238 SUPERFAMILY SSF46689 5 66 1.59E-18 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_27470 1b4e21df018a8538eacb41a81dffd6d3 238 ProSitePatterns PS01081 TetR-type HTH domain signature. 25 55 - T 11-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMK58_27470 1b4e21df018a8538eacb41a81dffd6d3 238 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 8.6E-11 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_27470 1b4e21df018a8538eacb41a81dffd6d3 238 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 8.6E-11 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_27470 1b4e21df018a8538eacb41a81dffd6d3 238 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 59 9.7E-19 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_27470 1b4e21df018a8538eacb41a81dffd6d3 238 Gene3D G3DSA:1.10.357.10 1 208 3.7E-28 T 11-10-2018 AMK58_16315 12158c0f07d1b484eb5820541b861614 474 Pfam PF13454 FAD-NAD(P)-binding 11 166 8.3E-40 T 11-10-2018 IPR038732 FAD-dependent urate hydroxylase HpyO, FAD/NAD(P)-binding domain AMK58_16315 12158c0f07d1b484eb5820541b861614 474 SUPERFAMILY SSF51905 6 239 4.86E-17 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_13040 e0009fa3016c6d988da371e18e3e20eb 631 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 433 539 7.5E-13 T 11-10-2018 IPR000160 GGDEF domain AMK58_13040 e0009fa3016c6d988da371e18e3e20eb 631 SMART SM00267 423 581 1.5E-9 T 11-10-2018 IPR000160 GGDEF domain AMK58_13040 e0009fa3016c6d988da371e18e3e20eb 631 Pfam PF00990 Diguanylate cyclase, GGDEF domain 437 537 1.4E-15 T 11-10-2018 IPR000160 GGDEF domain AMK58_13040 e0009fa3016c6d988da371e18e3e20eb 631 Gene3D G3DSA:3.20.20.450 19 277 1.2E-54 T 11-10-2018 IPR035919 EAL domain superfamily AMK58_13040 e0009fa3016c6d988da371e18e3e20eb 631 Gene3D G3DSA:3.10.580.10 298 429 2.3E-5 T 11-10-2018 AMK58_13040 e0009fa3016c6d988da371e18e3e20eb 631 SUPERFAMILY SSF55073 439 540 1.18E-18 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_13040 e0009fa3016c6d988da371e18e3e20eb 631 SUPERFAMILY SSF141868 36 268 5.75E-52 T 11-10-2018 IPR035919 EAL domain superfamily AMK58_13040 e0009fa3016c6d988da371e18e3e20eb 631 Pfam PF00563 EAL domain 36 268 6.9E-46 T 11-10-2018 IPR001633 EAL domain AMK58_13040 e0009fa3016c6d988da371e18e3e20eb 631 Gene3D G3DSA:3.30.70.270 430 594 5.7E-22 T 11-10-2018 AMK58_13040 e0009fa3016c6d988da371e18e3e20eb 631 SUPERFAMILY SSF54631 326 425 1.07E-6 T 11-10-2018 AMK58_13040 e0009fa3016c6d988da371e18e3e20eb 631 SMART SM00052 21 273 5.6E-34 T 11-10-2018 IPR001633 EAL domain AMK58_22140 095b4622eaf1862f2585d1244ef1f3da 348 SUPERFAMILY SSF53850 30 344 5.2E-56 T 11-10-2018 AMK58_22140 095b4622eaf1862f2585d1244ef1f3da 348 Gene3D G3DSA:3.40.190.10 37 312 7.8E-73 T 11-10-2018 AMK58_22140 095b4622eaf1862f2585d1244ef1f3da 348 Gene3D G3DSA:3.40.190.10 134 314 7.8E-73 T 11-10-2018 AMK58_22140 095b4622eaf1862f2585d1244ef1f3da 348 Pfam PF13343 Bacterial extracellular solute-binding protein 82 334 4.3E-30 T 11-10-2018 AMK58_21525 d353a3ac34e928f9fae1820debe627a0 476 SMART SM00448 7 118 3.1E-30 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_21525 d353a3ac34e928f9fae1820debe627a0 476 SUPERFAMILY SSF46689 361 474 3.09E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_21525 d353a3ac34e928f9fae1820debe627a0 476 Gene3D G3DSA:1.10.10.60 429 471 7.1E-14 T 11-10-2018 AMK58_21525 d353a3ac34e928f9fae1820debe627a0 476 Pfam PF00072 Response regulator receiver domain 9 118 1.4E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_21525 d353a3ac34e928f9fae1820debe627a0 476 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 234 249 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AMK58_21525 d353a3ac34e928f9fae1820debe627a0 476 SMART SM00382 168 311 5.3E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_21525 d353a3ac34e928f9fae1820debe627a0 476 Gene3D G3DSA:1.10.8.60 319 383 6.4E-16 T 11-10-2018 AMK58_21525 d353a3ac34e928f9fae1820debe627a0 476 Pfam PF02954 Bacterial regulatory protein, Fis family 434 470 3.7E-12 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMK58_21525 d353a3ac34e928f9fae1820debe627a0 476 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 172 185 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AMK58_21525 d353a3ac34e928f9fae1820debe627a0 476 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 361 370 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site AMK58_21525 d353a3ac34e928f9fae1820debe627a0 476 SUPERFAMILY SSF52172 6 193 1.28E-41 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_21525 d353a3ac34e928f9fae1820debe627a0 476 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 440 457 8.8E-6 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMK58_21525 d353a3ac34e928f9fae1820debe627a0 476 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 457 476 8.8E-6 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMK58_21525 d353a3ac34e928f9fae1820debe627a0 476 Gene3D G3DSA:3.40.50.2300 4 137 2.0E-31 T 11-10-2018 AMK58_21525 d353a3ac34e928f9fae1820debe627a0 476 SUPERFAMILY SSF52540 147 379 1.69E-69 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_21525 d353a3ac34e928f9fae1820debe627a0 476 Gene3D G3DSA:3.40.50.300 138 318 8.6E-67 T 11-10-2018 AMK58_21525 d353a3ac34e928f9fae1820debe627a0 476 Pfam PF00158 Sigma-54 interaction domain 148 314 7.0E-69 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AMK58_14745 eca87eabcebea6f5cd4257c060753f6b 301 Pfam PF01471 Putative peptidoglycan binding domain 37 92 3.2E-11 T 11-10-2018 IPR002477 Peptidoglycan binding-like AMK58_14745 eca87eabcebea6f5cd4257c060753f6b 301 SUPERFAMILY SSF47090 34 92 1.57E-10 T 11-10-2018 IPR036365 PGBD-like superfamily AMK58_14745 eca87eabcebea6f5cd4257c060753f6b 301 Gene3D G3DSA:1.10.101.10 26 96 6.0E-8 T 11-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 AMK58_13780 12a0141be864fb029532e9990f88893c 168 Pfam PF00186 Dihydrofolate reductase 3 160 4.8E-48 T 11-10-2018 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0046654|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 AMK58_13780 12a0141be864fb029532e9990f88893c 168 PRINTS PR00070 Dihydrofolate reductase signature 41 52 4.7E-15 T 11-10-2018 AMK58_13780 12a0141be864fb029532e9990f88893c 168 PRINTS PR00070 Dihydrofolate reductase signature 28 36 4.7E-15 T 11-10-2018 AMK58_13780 12a0141be864fb029532e9990f88893c 168 PRINTS PR00070 Dihydrofolate reductase signature 14 24 4.7E-15 T 11-10-2018 AMK58_13780 12a0141be864fb029532e9990f88893c 168 PRINTS PR00070 Dihydrofolate reductase signature 96 110 4.7E-15 T 11-10-2018 AMK58_13780 12a0141be864fb029532e9990f88893c 168 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 14 36 - T 11-10-2018 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-1474151|Reactome: R-HSA-196757|Reactome: R-HSA-539107 AMK58_13780 12a0141be864fb029532e9990f88893c 168 PIRSF PIRSF000194 1 164 1.7E-54 T 11-10-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0046654|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614 AMK58_13780 12a0141be864fb029532e9990f88893c 168 Gene3D G3DSA:3.40.430.10 1 166 2.7E-50 T 11-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 AMK58_13780 12a0141be864fb029532e9990f88893c 168 SUPERFAMILY SSF53597 1 162 7.72E-52 T 11-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 AMK58_02040 71d8307c8b42fe6d3f10415842279215 155 Pfam PF00583 Acetyltransferase (GNAT) family 40 140 9.7E-15 T 11-10-2018 IPR000182 GNAT domain AMK58_02040 71d8307c8b42fe6d3f10415842279215 155 SUPERFAMILY SSF55729 1 150 3.55E-29 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_02040 71d8307c8b42fe6d3f10415842279215 155 Gene3D G3DSA:3.40.630.30 1 151 2.6E-38 T 11-10-2018 AMK58_27505 7ae930f7cd7337223087b28e5e3d63b9 279 Pfam PF00588 SpoU rRNA Methylase family 128 266 4.0E-28 T 11-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AMK58_27505 7ae930f7cd7337223087b28e5e3d63b9 279 SUPERFAMILY SSF55315 11 108 1.88E-12 T 11-10-2018 IPR029064 50S ribosomal protein L30e-like AMK58_27505 7ae930f7cd7337223087b28e5e3d63b9 279 Gene3D G3DSA:3.40.1280.10 120 275 1.7E-40 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMK58_27505 7ae930f7cd7337223087b28e5e3d63b9 279 SUPERFAMILY SSF75217 122 269 2.22E-34 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases AMK58_01035 eee0301d57d425c6d76f99a14b4d4672 460 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 162 455 2.6E-87 T 11-10-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 AMK58_01035 eee0301d57d425c6d76f99a14b4d4672 460 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 249 450 1.2E-16 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_01035 eee0301d57d425c6d76f99a14b4d4672 460 Pfam PF12501 Phosphate ATP-binding cassette transporter 7 178 5.8E-34 T 11-10-2018 IPR022182 ABC transporter phosphate permease PstC, N-terminal domain GO:0006817 AMK58_01035 eee0301d57d425c6d76f99a14b4d4672 460 SUPERFAMILY SSF161098 177 451 1.64E-32 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_01035 eee0301d57d425c6d76f99a14b4d4672 460 Gene3D G3DSA:1.10.3720.10 227 458 1.3E-35 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_07320 ef8451e099c7c0e4bed0043ac3652c2b 466 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 448 1.9E-168 T 11-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 AMK58_07320 ef8451e099c7c0e4bed0043ac3652c2b 466 Pfam PF13541 Subunit ChlI of Mg-chelatase 336 424 1.5E-7 T 11-10-2018 AMK58_07320 ef8451e099c7c0e4bed0043ac3652c2b 466 Gene3D G3DSA:3.40.50.300 68 275 4.5E-38 T 11-10-2018 AMK58_07320 ef8451e099c7c0e4bed0043ac3652c2b 466 SUPERFAMILY SSF54211 251 429 1.74E-37 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMK58_07320 ef8451e099c7c0e4bed0043ac3652c2b 466 Pfam PF13481 AAA domain 72 218 2.7E-14 T 11-10-2018 AMK58_07320 ef8451e099c7c0e4bed0043ac3652c2b 466 Gene3D G3DSA:3.30.230.10 285 455 2.5E-16 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMK58_07320 ef8451e099c7c0e4bed0043ac3652c2b 466 SMART SM00382 86 240 4.3E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_07320 ef8451e099c7c0e4bed0043ac3652c2b 466 PRINTS PR01874 DNA repair protein radA signature 209 237 4.4E-89 T 11-10-2018 AMK58_07320 ef8451e099c7c0e4bed0043ac3652c2b 466 PRINTS PR01874 DNA repair protein radA signature 170 194 4.4E-89 T 11-10-2018 AMK58_07320 ef8451e099c7c0e4bed0043ac3652c2b 466 PRINTS PR01874 DNA repair protein radA signature 318 341 4.4E-89 T 11-10-2018 AMK58_07320 ef8451e099c7c0e4bed0043ac3652c2b 466 PRINTS PR01874 DNA repair protein radA signature 10 34 4.4E-89 T 11-10-2018 AMK58_07320 ef8451e099c7c0e4bed0043ac3652c2b 466 PRINTS PR01874 DNA repair protein radA signature 119 136 4.4E-89 T 11-10-2018 AMK58_07320 ef8451e099c7c0e4bed0043ac3652c2b 466 PRINTS PR01874 DNA repair protein radA signature 244 270 4.4E-89 T 11-10-2018 AMK58_07320 ef8451e099c7c0e4bed0043ac3652c2b 466 PRINTS PR01874 DNA repair protein radA signature 78 106 4.4E-89 T 11-10-2018 AMK58_07320 ef8451e099c7c0e4bed0043ac3652c2b 466 SUPERFAMILY SSF52540 67 288 3.63E-45 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_07320 ef8451e099c7c0e4bed0043ac3652c2b 466 Hamap MF_01498 DNA repair protein RadA [radA]. 21 454 43.023 T 11-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 AMK58_00750 31c789a6eda0c10e8ad76ccec731b3f1 511 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 2 339 5.5E-137 T 11-10-2018 IPR010213 Transcription termination factor NusA GO:0003723 AMK58_00750 31c789a6eda0c10e8ad76ccec731b3f1 511 SUPERFAMILY SSF54814 276 339 1.05E-17 T 11-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 AMK58_00750 31c789a6eda0c10e8ad76ccec731b3f1 511 SUPERFAMILY SSF47794 427 491 2.04E-9 T 11-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 AMK58_00750 31c789a6eda0c10e8ad76ccec731b3f1 511 Pfam PF08529 NusA N-terminal domain 2 122 2.7E-37 T 11-10-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 AMK58_00750 31c789a6eda0c10e8ad76ccec731b3f1 511 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 362 410 7.1E-19 T 11-10-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication AMK58_00750 31c789a6eda0c10e8ad76ccec731b3f1 511 Gene3D G3DSA:3.30.1480.10 1 125 1.5E-42 T 11-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 AMK58_00750 31c789a6eda0c10e8ad76ccec731b3f1 511 Gene3D G3DSA:1.10.150.20 429 489 1.2E-12 T 11-10-2018 AMK58_00750 31c789a6eda0c10e8ad76ccec731b3f1 511 SMART SM00322 227 299 2.1 T 11-10-2018 IPR004087 K Homology domain GO:0003676 AMK58_00750 31c789a6eda0c10e8ad76ccec731b3f1 511 SMART SM00322 300 411 0.037 T 11-10-2018 IPR004087 K Homology domain GO:0003676 AMK58_00750 31c789a6eda0c10e8ad76ccec731b3f1 511 SMART SM00316 131 197 1.2E-8 T 11-10-2018 IPR022967 RNA-binding domain, S1 AMK58_00750 31c789a6eda0c10e8ad76ccec731b3f1 511 Gene3D G3DSA:2.40.50.140 133 195 5.4E-24 T 11-10-2018 AMK58_00750 31c789a6eda0c10e8ad76ccec731b3f1 511 SUPERFAMILY SSF47794 351 411 1.1E-16 T 11-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 AMK58_00750 31c789a6eda0c10e8ad76ccec731b3f1 511 SUPERFAMILY SSF69705 2 123 5.62E-40 T 11-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 AMK58_00750 31c789a6eda0c10e8ad76ccec731b3f1 511 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 1 407 30.544 T 11-10-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 AMK58_00750 31c789a6eda0c10e8ad76ccec731b3f1 511 Gene3D G3DSA:3.30.300.20 275 343 8.5E-28 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta AMK58_00750 31c789a6eda0c10e8ad76ccec731b3f1 511 Pfam PF14520 Helix-hairpin-helix domain 366 405 1.8E-4 T 11-10-2018 AMK58_00750 31c789a6eda0c10e8ad76ccec731b3f1 511 Pfam PF13184 NusA-like KH domain 227 293 5.3E-28 T 11-10-2018 IPR025249 KH domain, NusA-like GO:0003723 AMK58_00750 31c789a6eda0c10e8ad76ccec731b3f1 511 SUPERFAMILY SSF50249 129 196 2.42E-19 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_00750 31c789a6eda0c10e8ad76ccec731b3f1 511 Gene3D G3DSA:1.10.150.20 351 416 5.7E-23 T 11-10-2018 AMK58_00750 31c789a6eda0c10e8ad76ccec731b3f1 511 SUPERFAMILY SSF54814 197 274 2.49E-31 T 11-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 AMK58_00750 31c789a6eda0c10e8ad76ccec731b3f1 511 Pfam PF00575 S1 RNA binding domain 129 191 5.5E-6 T 11-10-2018 IPR003029 S1 domain GO:0003676 AMK58_00750 31c789a6eda0c10e8ad76ccec731b3f1 511 Gene3D G3DSA:3.30.300.20 196 274 1.2E-34 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta AMK58_27190 d1fc4a96b454178f277f88a922d5f7f7 398 Pfam PF07687 Peptidase dimerisation domain 183 295 6.4E-19 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain AMK58_27190 d1fc4a96b454178f277f88a922d5f7f7 398 SUPERFAMILY SSF55031 187 293 5.53E-19 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain AMK58_27190 d1fc4a96b454178f277f88a922d5f7f7 398 SUPERFAMILY SSF53187 14 390 7.48E-59 T 11-10-2018 AMK58_27190 d1fc4a96b454178f277f88a922d5f7f7 398 Gene3D G3DSA:3.30.70.360 187 303 3.0E-102 T 11-10-2018 AMK58_27190 d1fc4a96b454178f277f88a922d5f7f7 398 TIGRFAM TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE) 19 390 2.4E-113 T 11-10-2018 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 AMK58_27190 d1fc4a96b454178f277f88a922d5f7f7 398 Pfam PF01546 Peptidase family M20/M25/M40 79 390 5.6E-34 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 AMK58_27190 d1fc4a96b454178f277f88a922d5f7f7 398 Gene3D G3DSA:3.40.630.10 24 380 3.0E-102 T 11-10-2018 AMK58_14770 2a0610f294057016db97dbbe85264a06 468 Gene3D G3DSA:1.25.40.10 3 179 5.0E-32 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_14770 2a0610f294057016db97dbbe85264a06 468 SUPERFAMILY SSF48452 8 173 5.55E-31 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_14770 2a0610f294057016db97dbbe85264a06 468 SUPERFAMILY SSF53448 205 436 6.0E-23 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_14770 2a0610f294057016db97dbbe85264a06 468 Pfam PF14559 Tetratricopeptide repeat 88 137 2.0E-7 T 11-10-2018 AMK58_14770 2a0610f294057016db97dbbe85264a06 468 SMART SM00028 106 139 59.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14770 2a0610f294057016db97dbbe85264a06 468 SMART SM00028 72 105 3.6E-4 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14770 2a0610f294057016db97dbbe85264a06 468 SMART SM00028 140 173 0.21 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14770 2a0610f294057016db97dbbe85264a06 468 SMART SM00028 38 71 99.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14770 2a0610f294057016db97dbbe85264a06 468 SMART SM00028 4 37 26.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14770 2a0610f294057016db97dbbe85264a06 468 Gene3D G3DSA:3.90.550.10 199 455 5.9E-23 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_14770 2a0610f294057016db97dbbe85264a06 468 Pfam PF02709 N-terminal domain of galactosyltransferase 366 413 7.7E-10 T 11-10-2018 IPR027791 Galactosyltransferase, C-terminal Reactome: R-HSA-2022854|Reactome: R-HSA-975577 AMK58_14770 2a0610f294057016db97dbbe85264a06 468 Pfam PF13181 Tetratricopeptide repeat 145 172 0.18 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14770 2a0610f294057016db97dbbe85264a06 468 Pfam PF13432 Tetratricopeptide repeat 9 57 0.0021 T 11-10-2018 AMK58_05600 d15b6aa3b19be2c45ccfdc78f3e72704 296 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 29 238 5.5E-61 T 11-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AMK58_05600 d15b6aa3b19be2c45ccfdc78f3e72704 296 Gene3D G3DSA:3.20.20.70 19 274 3.1E-84 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_05600 d15b6aa3b19be2c45ccfdc78f3e72704 296 PIRSF PIRSF001357 21 265 1.4E-67 T 11-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AMK58_05600 d15b6aa3b19be2c45ccfdc78f3e72704 296 SUPERFAMILY SSF51569 27 255 2.72E-72 T 11-10-2018 AMK58_05600 d15b6aa3b19be2c45ccfdc78f3e72704 296 SMART SM01133 26 256 1.6E-63 T 11-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AMK58_05600 d15b6aa3b19be2c45ccfdc78f3e72704 296 Pfam PF01791 DeoC/LacD family aldolase 30 253 5.0E-29 T 11-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AMK58_18090 16ade603482b71b0a324df370ee07616 162 SUPERFAMILY SSF89963 2 82 5.62E-25 T 11-10-2018 IPR036183 YajQ-like superfamily AMK58_18090 16ade603482b71b0a324df370ee07616 162 Gene3D G3DSA:3.30.70.860 3 161 5.7E-54 T 11-10-2018 IPR035571 UPF0234-like, C-terminal AMK58_18090 16ade603482b71b0a324df370ee07616 162 Pfam PF04461 Protein of unknown function (DUF520) 2 161 4.9E-59 T 11-10-2018 IPR007551 Protein of unknown function DUF520 AMK58_18090 16ade603482b71b0a324df370ee07616 162 Gene3D G3DSA:3.30.70.990 9 99 5.7E-54 T 11-10-2018 IPR035570 UPF0234, N-terminal AMK58_18090 16ade603482b71b0a324df370ee07616 162 SUPERFAMILY SSF89963 91 162 1.46E-27 T 11-10-2018 IPR036183 YajQ-like superfamily AMK58_18090 16ade603482b71b0a324df370ee07616 162 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 1 162 25.792 T 11-10-2018 IPR007551 Protein of unknown function DUF520 AMK58_10445 1c83abb3a186d522bbdea2dd67bca07d 144 Gene3D G3DSA:1.10.10.2720 73 144 2.0E-27 T 11-10-2018 AMK58_10445 1c83abb3a186d522bbdea2dd67bca07d 144 Gene3D G3DSA:3.30.1550.10 2 72 5.5E-35 T 11-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily AMK58_10445 1c83abb3a186d522bbdea2dd67bca07d 144 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 67 5.9E-30 T 11-10-2018 IPR020784 Ribosomal protein L11, N-terminal AMK58_10445 1c83abb3a186d522bbdea2dd67bca07d 144 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 141 3.4E-23 T 11-10-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 AMK58_10445 1c83abb3a186d522bbdea2dd67bca07d 144 SUPERFAMILY SSF54747 3 73 5.1E-31 T 11-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily AMK58_10445 1c83abb3a186d522bbdea2dd67bca07d 144 SMART SM00649 9 142 6.4E-78 T 11-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 AMK58_10445 1c83abb3a186d522bbdea2dd67bca07d 144 SUPERFAMILY SSF46906 68 141 3.01E-23 T 11-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily AMK58_10445 1c83abb3a186d522bbdea2dd67bca07d 144 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 143 30.281 T 11-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 AMK58_10445 1c83abb3a186d522bbdea2dd67bca07d 144 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 142 4.5E-63 T 11-10-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_10445 1c83abb3a186d522bbdea2dd67bca07d 144 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 74 2.0E-13 T 11-10-2018 AMK58_10895 1e43a6ed7f1a4ac523080d067a74df4e 555 SUPERFAMILY SSF53474 90 541 2.39E-70 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_10895 1e43a6ed7f1a4ac523080d067a74df4e 555 Gene3D G3DSA:3.40.50.1820 411 545 2.9E-5 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_10895 1e43a6ed7f1a4ac523080d067a74df4e 555 Gene3D G3DSA:3.40.50.1820 111 342 1.0E-19 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_10895 1e43a6ed7f1a4ac523080d067a74df4e 555 ProSitePatterns PS00131 Serine carboxypeptidases, serine active site. 257 264 - T 11-10-2018 IPR018202 Serine carboxypeptidase, serine active site AMK58_10895 1e43a6ed7f1a4ac523080d067a74df4e 555 Pfam PF00450 Serine carboxypeptidase 137 518 2.3E-17 T 11-10-2018 IPR001563 Peptidase S10, serine carboxypeptidase GO:0004185|GO:0006508 AMK58_23835 e21f35d6acf05d1b156660d823aa74e4 301 Pfam PF00892 EamA-like transporter family 157 293 3.9E-15 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_23835 e21f35d6acf05d1b156660d823aa74e4 301 Pfam PF00892 EamA-like transporter family 15 143 2.9E-13 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_23835 e21f35d6acf05d1b156660d823aa74e4 301 SUPERFAMILY SSF103481 46 147 1.7E-10 T 11-10-2018 AMK58_23835 e21f35d6acf05d1b156660d823aa74e4 301 SUPERFAMILY SSF103481 193 296 7.45E-11 T 11-10-2018 AMK58_07065 cb98cc0ea72a08dd4950b731e460cf82 101 TIGRFAM TIGR00192 urease_beta: urease, beta subunit 1 100 6.1E-46 T 11-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMK58_07065 cb98cc0ea72a08dd4950b731e460cf82 101 Gene3D G3DSA:2.10.150.10 1 101 7.4E-48 T 11-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMK58_07065 cb98cc0ea72a08dd4950b731e460cf82 101 Pfam PF00699 Urease beta subunit 3 99 1.4E-46 T 11-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMK58_07065 cb98cc0ea72a08dd4950b731e460cf82 101 SUPERFAMILY SSF51278 1 101 1.7E-48 T 11-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMK58_07065 cb98cc0ea72a08dd4950b731e460cf82 101 Hamap MF_01954 Urease subunit beta [ureB]. 1 101 32.102 T 11-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMK58_01340 44e8e03479f099edf45efe709e871d95 194 Pfam PF00588 SpoU rRNA Methylase family 6 139 6.1E-21 T 11-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AMK58_01340 44e8e03479f099edf45efe709e871d95 194 SUPERFAMILY SSF75217 6 145 5.62E-28 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases AMK58_01340 44e8e03479f099edf45efe709e871d95 194 Gene3D G3DSA:3.40.1280.10 7 145 6.5E-25 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMK58_04650 1429b534c9c4d5f97514f1d2410b3ff7 519 Gene3D G3DSA:3.40.50.1980 221 323 4.7E-31 T 11-10-2018 AMK58_04650 1429b534c9c4d5f97514f1d2410b3ff7 519 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 92 99 - T 11-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 AMK58_04650 1429b534c9c4d5f97514f1d2410b3ff7 519 TIGRFAM TIGR01286 nifK: nitrogenase molybdenum-iron protein beta chain 6 519 1.2E-255 T 11-10-2018 IPR005976 Nitrogenase molybdenum-iron protein beta chain GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 AMK58_04650 1429b534c9c4d5f97514f1d2410b3ff7 519 Gene3D G3DSA:3.40.50.1980 368 480 1.4E-88 T 11-10-2018 AMK58_04650 1429b534c9c4d5f97514f1d2410b3ff7 519 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 74 497 6.0E-115 T 11-10-2018 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 AMK58_04650 1429b534c9c4d5f97514f1d2410b3ff7 519 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 155 169 - T 11-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 AMK58_04650 1429b534c9c4d5f97514f1d2410b3ff7 519 Pfam PF11844 Domain of unknown function (DUF3364) 6 60 5.3E-25 T 11-10-2018 IPR024564 Nitrogenase molybdenum-iron protein beta chain, N-terminal KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 AMK58_04650 1429b534c9c4d5f97514f1d2410b3ff7 519 Gene3D G3DSA:1.20.89.10 324 519 1.4E-88 T 11-10-2018 AMK58_04650 1429b534c9c4d5f97514f1d2410b3ff7 519 SUPERFAMILY SSF53807 7 518 9.16E-171 T 11-10-2018 AMK58_04650 1429b534c9c4d5f97514f1d2410b3ff7 519 Gene3D G3DSA:3.40.50.1980 74 215 7.7E-43 T 11-10-2018 AMK58_19195 f5c1a899c6ab7a1c003e6da65c18022e 253 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 170 253 1.8E-28 T 11-10-2018 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 AMK58_19195 f5c1a899c6ab7a1c003e6da65c18022e 253 SUPERFAMILY SSF56281 1 253 1.25E-77 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMK58_19195 f5c1a899c6ab7a1c003e6da65c18022e 253 Gene3D G3DSA:3.60.15.10 1 253 2.4E-93 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMK58_19195 f5c1a899c6ab7a1c003e6da65c18022e 253 SMART SM00849 11 169 6.0E-40 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMK58_19195 f5c1a899c6ab7a1c003e6da65c18022e 253 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 3 253 3.8E-105 T 11-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 AMK58_19195 f5c1a899c6ab7a1c003e6da65c18022e 253 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 1 253 45.343 T 11-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 AMK58_19195 f5c1a899c6ab7a1c003e6da65c18022e 253 Pfam PF00753 Metallo-beta-lactamase superfamily 13 169 8.3E-23 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMK58_19195 f5c1a899c6ab7a1c003e6da65c18022e 253 PIRSF PIRSF005457 1 253 8.8E-112 T 11-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 AMK58_07325 0d9524ab3f053b138820e2abf8eb1489 275 Hamap MF_01974 Methionine aminopeptidase [map]. 9 257 39.094 T 11-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMK58_07325 0d9524ab3f053b138820e2abf8eb1489 275 Gene3D G3DSA:3.90.230.10 5 266 6.1E-100 T 11-10-2018 AMK58_07325 0d9524ab3f053b138820e2abf8eb1489 275 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 10 256 3.2E-89 T 11-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMK58_07325 0d9524ab3f053b138820e2abf8eb1489 275 Pfam PF00557 Metallopeptidase family M24 18 248 2.0E-50 T 11-10-2018 IPR000994 Peptidase M24 AMK58_07325 0d9524ab3f053b138820e2abf8eb1489 275 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 174 192 - T 11-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMK58_07325 0d9524ab3f053b138820e2abf8eb1489 275 PRINTS PR00599 Methionine aminopeptidase-1 signature 97 113 1.3E-20 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMK58_07325 0d9524ab3f053b138820e2abf8eb1489 275 PRINTS PR00599 Methionine aminopeptidase-1 signature 168 180 1.3E-20 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMK58_07325 0d9524ab3f053b138820e2abf8eb1489 275 PRINTS PR00599 Methionine aminopeptidase-1 signature 199 211 1.3E-20 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMK58_07325 0d9524ab3f053b138820e2abf8eb1489 275 PRINTS PR00599 Methionine aminopeptidase-1 signature 74 87 1.3E-20 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMK58_07325 0d9524ab3f053b138820e2abf8eb1489 275 SUPERFAMILY SSF55920 12 260 2.09E-84 T 11-10-2018 IPR036005 Creatinase/aminopeptidase-like AMK58_24995 fc94f891d47a5f78cf14952c7751e56e 767 Gene3D G3DSA:3.40.50.2000 161 313 1.0E-32 T 11-10-2018 AMK58_24995 fc94f891d47a5f78cf14952c7751e56e 767 SUPERFAMILY SSF51971 375 736 5.65E-51 T 11-10-2018 AMK58_24995 fc94f891d47a5f78cf14952c7751e56e 767 SUPERFAMILY SSF54373 619 684 1.33E-19 T 11-10-2018 AMK58_24995 fc94f891d47a5f78cf14952c7751e56e 767 Pfam PF13450 NAD(P)-binding Rossmann-like domain 379 446 5.8E-15 T 11-10-2018 AMK58_24995 fc94f891d47a5f78cf14952c7751e56e 767 TIGRFAM TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase 375 731 1.7E-117 T 11-10-2018 IPR004379 UDP-galactopyranose mutase GO:0008767 KEGG: 00052+5.4.99.9|KEGG: 00520+5.4.99.9|MetaCyc: PWY-6397|MetaCyc: PWY-7328|MetaCyc: PWY-7622 AMK58_24995 fc94f891d47a5f78cf14952c7751e56e 767 Gene3D G3DSA:3.40.50.720 525 637 1.9E-29 T 11-10-2018 AMK58_24995 fc94f891d47a5f78cf14952c7751e56e 767 SUPERFAMILY SSF53756 77 341 4.97E-19 T 11-10-2018 AMK58_24995 fc94f891d47a5f78cf14952c7751e56e 767 Pfam PF13692 Glycosyl transferases group 1 172 307 2.8E-11 T 11-10-2018 AMK58_24995 fc94f891d47a5f78cf14952c7751e56e 767 Pfam PF03275 UDP-galactopyranose mutase 521 717 1.2E-80 T 11-10-2018 IPR015899 UDP-galactopyranose mutase, C-terminal GO:0008767 KEGG: 00052+5.4.99.9|KEGG: 00520+5.4.99.9|MetaCyc: PWY-6397|MetaCyc: PWY-7328|MetaCyc: PWY-7622 AMK58_24995 fc94f891d47a5f78cf14952c7751e56e 767 Gene3D G3DSA:3.40.50.720 371 472 1.1E-31 T 11-10-2018 AMK58_24995 fc94f891d47a5f78cf14952c7751e56e 767 Gene3D G3DSA:3.40.50.720 646 744 5.1E-21 T 11-10-2018 AMK58_14225 dbe9381d9211faeec30d08bdc7e84a15 256 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_14225 dbe9381d9211faeec30d08bdc7e84a15 256 SMART SM00382 33 214 5.3E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_14225 dbe9381d9211faeec30d08bdc7e84a15 256 Gene3D G3DSA:3.40.50.300 3 246 4.4E-66 T 11-10-2018 AMK58_14225 dbe9381d9211faeec30d08bdc7e84a15 256 Pfam PF00005 ABC transporter 24 163 1.3E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_14225 dbe9381d9211faeec30d08bdc7e84a15 256 SUPERFAMILY SSF52540 4 232 2.34E-71 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_06405 11dddc10dca668c44622b89d38fd31c3 396 Pfam PF04748 Divergent polysaccharide deacetylase 178 389 1.5E-80 T 11-10-2018 IPR006837 Divergent polysaccharide deacetylase AMK58_06405 11dddc10dca668c44622b89d38fd31c3 396 Gene3D G3DSA:3.20.20.370 159 395 4.8E-92 T 11-10-2018 AMK58_06405 11dddc10dca668c44622b89d38fd31c3 396 SUPERFAMILY SSF88713 173 389 1.59E-72 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMK58_18140 0957758a92696a323efb2a7637c71db0 533 SUPERFAMILY SSF53850 26 530 4.03E-162 T 11-10-2018 AMK58_18140 0957758a92696a323efb2a7637c71db0 533 PIRSF PIRSF002741 5 532 2.1E-126 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMK58_18140 0957758a92696a323efb2a7637c71db0 533 Gene3D G3DSA:3.90.76.10 49 206 7.5E-182 T 11-10-2018 AMK58_18140 0957758a92696a323efb2a7637c71db0 533 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 69 447 3.8E-108 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain AMK58_18140 0957758a92696a323efb2a7637c71db0 533 Gene3D G3DSA:3.10.105.10 288 507 7.5E-182 T 11-10-2018 AMK58_18140 0957758a92696a323efb2a7637c71db0 533 Gene3D G3DSA:3.40.190.10 207 520 7.5E-182 T 11-10-2018 AMK58_18140 0957758a92696a323efb2a7637c71db0 533 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 75 97 - T 11-10-2018 IPR023765 Solute-binding protein family 5, conserved site AMK58_20175 8b32c676ded0d82870986bdc9a970dc6 720 SMART SM00028 140 173 0.074 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_20175 8b32c676ded0d82870986bdc9a970dc6 720 SMART SM00028 208 241 130.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_20175 8b32c676ded0d82870986bdc9a970dc6 720 SMART SM00028 276 309 7.6E-4 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_20175 8b32c676ded0d82870986bdc9a970dc6 720 SMART SM00028 242 275 86.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_20175 8b32c676ded0d82870986bdc9a970dc6 720 SMART SM00028 4 37 120.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_20175 8b32c676ded0d82870986bdc9a970dc6 720 SMART SM00028 106 139 1.4E-6 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_20175 8b32c676ded0d82870986bdc9a970dc6 720 SMART SM00028 72 105 0.079 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_20175 8b32c676ded0d82870986bdc9a970dc6 720 SMART SM00028 38 71 7.4 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_20175 8b32c676ded0d82870986bdc9a970dc6 720 SMART SM00028 174 207 0.17 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_20175 8b32c676ded0d82870986bdc9a970dc6 720 Gene3D G3DSA:1.25.40.10 2 75 1.9E-8 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_20175 8b32c676ded0d82870986bdc9a970dc6 720 Gene3D G3DSA:1.25.40.10 183 251 1.2E-8 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_20175 8b32c676ded0d82870986bdc9a970dc6 720 Gene3D G3DSA:1.25.40.10 252 321 2.8E-11 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_20175 8b32c676ded0d82870986bdc9a970dc6 720 Pfam PF14559 Tetratricopeptide repeat 16 75 1.3E-5 T 11-10-2018 AMK58_20175 8b32c676ded0d82870986bdc9a970dc6 720 Gene3D G3DSA:1.25.40.10 76 112 1.1E-9 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_20175 8b32c676ded0d82870986bdc9a970dc6 720 Gene3D G3DSA:1.25.40.10 113 147 1.7E-12 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_20175 8b32c676ded0d82870986bdc9a970dc6 720 Gene3D G3DSA:1.25.40.10 148 182 3.5E-7 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_20175 8b32c676ded0d82870986bdc9a970dc6 720 SUPERFAMILY SSF48452 114 329 3.32E-30 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_20175 8b32c676ded0d82870986bdc9a970dc6 720 Pfam PF13181 Tetratricopeptide repeat 276 308 0.011 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_20175 8b32c676ded0d82870986bdc9a970dc6 720 Gene3D G3DSA:3.40.50.11380 350 705 1.9E-117 T 11-10-2018 AMK58_20175 8b32c676ded0d82870986bdc9a970dc6 720 SUPERFAMILY SSF53756 366 695 9.1E-6 T 11-10-2018 AMK58_20175 8b32c676ded0d82870986bdc9a970dc6 720 Gene3D G3DSA:3.40.50.2000 520 699 1.9E-117 T 11-10-2018 AMK58_20175 8b32c676ded0d82870986bdc9a970dc6 720 Pfam PF13432 Tetratricopeptide repeat 145 207 3.9E-5 T 11-10-2018 AMK58_20175 8b32c676ded0d82870986bdc9a970dc6 720 SUPERFAMILY SSF48452 8 178 6.35E-32 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_20175 8b32c676ded0d82870986bdc9a970dc6 720 Pfam PF13844 Glycosyl transferase family 41 530 709 5.4E-22 T 11-10-2018 IPR029489 O-GlcNAc transferase, C-terminal KEGG: 00514+2.4.1.255|MetaCyc: PWY-7437|Reactome: R-HSA-3214847|Reactome: R-HSA-5689603 AMK58_20175 8b32c676ded0d82870986bdc9a970dc6 720 Pfam PF13844 Glycosyl transferase family 41 364 510 5.5E-16 T 11-10-2018 IPR029489 O-GlcNAc transferase, C-terminal KEGG: 00514+2.4.1.255|MetaCyc: PWY-7437|Reactome: R-HSA-3214847|Reactome: R-HSA-5689603 AMK58_20175 8b32c676ded0d82870986bdc9a970dc6 720 Pfam PF00515 Tetratricopeptide repeat 106 139 9.9E-8 T 11-10-2018 IPR001440 Tetratricopeptide repeat 1 GO:0005515 AMK58_16120 aba1f0ca3bc80939a4a556d09a36a850 411 Gene3D G3DSA:3.40.50.12020 1 180 1.3E-54 T 11-10-2018 AMK58_16120 aba1f0ca3bc80939a4a556d09a36a850 411 Gene3D G3DSA:3.40.50.12030 186 404 2.2E-90 T 11-10-2018 AMK58_16120 aba1f0ca3bc80939a4a556d09a36a850 411 Pfam PF06792 Uncharacterised protein family (UPF0261) 10 402 8.1E-162 T 11-10-2018 IPR008322 Uncharacterised protein family UPF0261 AMK58_16120 aba1f0ca3bc80939a4a556d09a36a850 411 Hamap MF_00677 UPF0261 protein . 8 405 50.518 T 11-10-2018 IPR008322 Uncharacterised protein family UPF0261 AMK58_16120 aba1f0ca3bc80939a4a556d09a36a850 411 PIRSF PIRSF033271 8 406 1.0E-184 T 11-10-2018 IPR008322 Uncharacterised protein family UPF0261 AMK58_23495 7e235d2798a427875bbc9b39a4a427ff 140 Gene3D G3DSA:3.30.1330.40 5 139 8.4E-31 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMK58_23495 7e235d2798a427875bbc9b39a4a427ff 140 SUPERFAMILY SSF55298 23 138 2.36E-27 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMK58_23495 7e235d2798a427875bbc9b39a4a427ff 140 Pfam PF01042 Endoribonuclease L-PSP 27 135 6.9E-20 T 11-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 AMK58_05605 4f1d3b5c21653f8ae127c4faa6580b8f 440 ProSitePatterns PS00647 Thymidine and pyrimidine-nucleoside phosphorylases signature. 112 127 - T 11-10-2018 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMK58_05605 4f1d3b5c21653f8ae127c4faa6580b8f 440 PIRSF PIRSF000478 1 439 1.4E-145 T 11-10-2018 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMK58_05605 4f1d3b5c21653f8ae127c4faa6580b8f 440 Gene3D G3DSA:3.90.1170.30 341 433 1.2E-26 T 11-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMK58_05605 4f1d3b5c21653f8ae127c4faa6580b8f 440 SUPERFAMILY SSF54680 336 438 1.83E-24 T 11-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMK58_05605 4f1d3b5c21653f8ae127c4faa6580b8f 440 SUPERFAMILY SSF47648 2 69 6.67E-22 T 11-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMK58_05605 4f1d3b5c21653f8ae127c4faa6580b8f 440 SMART SM00941 349 424 1.2E-17 T 11-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMK58_05605 4f1d3b5c21653f8ae127c4faa6580b8f 440 Gene3D G3DSA:1.20.970.10 3 67 1.6E-24 T 11-10-2018 AMK58_05605 4f1d3b5c21653f8ae127c4faa6580b8f 440 TIGRFAM TIGR02643 T_phosphoryl: thymidine phosphorylase 1 438 1.9E-193 T 11-10-2018 IPR013465 Thymidine phosphorylase GO:0006213|GO:0009032 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 AMK58_05605 4f1d3b5c21653f8ae127c4faa6580b8f 440 TIGRFAM TIGR02644 Y_phosphoryl: pyrimidine-nucleoside phosphorylase 4 423 2.8E-149 T 11-10-2018 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic GO:0006213|GO:0016154 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181|Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMK58_05605 4f1d3b5c21653f8ae127c4faa6580b8f 440 Gene3D G3DSA:3.40.1030.10 69 340 7.1E-102 T 11-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMK58_05605 4f1d3b5c21653f8ae127c4faa6580b8f 440 SUPERFAMILY SSF52418 71 332 6.54E-87 T 11-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMK58_05605 4f1d3b5c21653f8ae127c4faa6580b8f 440 Hamap MF_01628 Thymidine phosphorylase [deoA]. 1 438 45.365 T 11-10-2018 IPR013465 Thymidine phosphorylase GO:0006213|GO:0009032 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 AMK58_05605 4f1d3b5c21653f8ae127c4faa6580b8f 440 Pfam PF00591 Glycosyl transferase family, a/b domain 79 308 6.5E-36 T 11-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMK58_05605 4f1d3b5c21653f8ae127c4faa6580b8f 440 Pfam PF02885 Glycosyl transferase family, helical bundle domain 5 66 4.0E-22 T 11-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMK58_05605 4f1d3b5c21653f8ae127c4faa6580b8f 440 Pfam PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain 349 423 3.5E-16 T 11-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMK58_13935 a397b240476317a64e42119b2481f2da 992 Pfam PF13244 Domain of unknown function (DUF4040) 620 685 1.0E-20 T 11-10-2018 IPR025383 Domain of unknown function DUF4040 AMK58_13935 a397b240476317a64e42119b2481f2da 992 Pfam PF00361 Proton-conducting membrane transporter 130 410 1.2E-61 T 11-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_13935 a397b240476317a64e42119b2481f2da 992 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 65 117 1.2E-10 T 11-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_13935 a397b240476317a64e42119b2481f2da 992 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 821 943 5.7E-31 T 11-10-2018 IPR007182 Na+/H+ antiporter MnhB subunit-related protein AMK58_13935 a397b240476317a64e42119b2481f2da 992 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 79 104 5.5E-38 T 11-10-2018 AMK58_13935 a397b240476317a64e42119b2481f2da 992 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 242 268 5.5E-38 T 11-10-2018 AMK58_13935 a397b240476317a64e42119b2481f2da 992 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 220 241 5.5E-38 T 11-10-2018 AMK58_13935 a397b240476317a64e42119b2481f2da 992 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 107 127 5.5E-38 T 11-10-2018 AMK58_13935 a397b240476317a64e42119b2481f2da 992 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 420 439 5.5E-38 T 11-10-2018 AMK58_13935 a397b240476317a64e42119b2481f2da 992 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 154 175 5.5E-38 T 11-10-2018 AMK58_13935 a397b240476317a64e42119b2481f2da 992 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 310 322 5.5E-38 T 11-10-2018 AMK58_01045 e51e78b093480e2ed3d634ebb924efb5 272 SMART SM00382 49 259 5.3E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_01045 e51e78b093480e2ed3d634ebb924efb5 272 ProSitePatterns PS00211 ABC transporters family signature. 169 183 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_01045 e51e78b093480e2ed3d634ebb924efb5 272 Gene3D G3DSA:3.40.50.300 25 270 7.3E-66 T 11-10-2018 AMK58_01045 e51e78b093480e2ed3d634ebb924efb5 272 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 25 272 1.1E-123 T 11-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 AMK58_01045 e51e78b093480e2ed3d634ebb924efb5 272 Pfam PF00005 ABC transporter 40 196 7.1E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_01045 e51e78b093480e2ed3d634ebb924efb5 272 SUPERFAMILY SSF52540 26 259 8.52E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_21135 90d1450579633c19f524d19596195015 199 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 82 93 0.51 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_21135 90d1450579633c19f524d19596195015 199 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 24 40 0.0095 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_21135 90d1450579633c19f524d19596195015 199 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 59 71 0.74 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_21135 90d1450579633c19f524d19596195015 199 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 5 22 6.3E-5 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_21135 90d1450579633c19f524d19596195015 199 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 41 58 0.0065 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_21135 90d1450579633c19f524d19596195015 199 Gene3D G3DSA:2.150.10.10 2 44 5.9E-12 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_21135 90d1450579633c19f524d19596195015 199 PRINTS PR00313 NodO calcium binding signature 87 96 4.4E-9 T 11-10-2018 AMK58_21135 90d1450579633c19f524d19596195015 199 PRINTS PR00313 NodO calcium binding signature 51 59 4.4E-9 T 11-10-2018 AMK58_21135 90d1450579633c19f524d19596195015 199 PRINTS PR00313 NodO calcium binding signature 3 14 4.4E-9 T 11-10-2018 AMK58_21135 90d1450579633c19f524d19596195015 199 PRINTS PR00313 NodO calcium binding signature 60 68 4.4E-9 T 11-10-2018 AMK58_21135 90d1450579633c19f524d19596195015 199 SUPERFAMILY SSF51120 3 141 6.67E-19 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_21135 90d1450579633c19f524d19596195015 199 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 38 56 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_21135 90d1450579633c19f524d19596195015 199 Gene3D G3DSA:2.150.10.10 45 153 2.7E-8 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_17265 5bd665813aea37617fdd81f36c804a46 494 SUPERFAMILY SSF56300 107 411 2.09E-10 T 11-10-2018 AMK58_17265 5bd665813aea37617fdd81f36c804a46 494 Gene3D G3DSA:3.60.21.70 103 405 9.5E-8 T 11-10-2018 IPR038607 PhoD-like superfamily AMK58_17265 5bd665813aea37617fdd81f36c804a46 494 Pfam PF09423 PhoD-like phosphatase 133 303 2.6E-7 T 11-10-2018 IPR018946 Alkaline phosphatase D-related AMK58_19765 61f7e7bd43ad741e9526a23f3c55b946 539 SUPERFAMILY SSF52540 303 524 5.71E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_19765 61f7e7bd43ad741e9526a23f3c55b946 539 SUPERFAMILY SSF52540 2 241 1.75E-45 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_19765 61f7e7bd43ad741e9526a23f3c55b946 539 ProSitePatterns PS00211 ABC transporters family signature. 443 457 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_19765 61f7e7bd43ad741e9526a23f3c55b946 539 Pfam PF00005 ABC transporter 341 471 1.6E-20 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_19765 61f7e7bd43ad741e9526a23f3c55b946 539 Pfam PF00005 ABC transporter 21 190 2.3E-24 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_19765 61f7e7bd43ad741e9526a23f3c55b946 539 Gene3D G3DSA:3.40.50.300 288 536 5.0E-61 T 11-10-2018 AMK58_19765 61f7e7bd43ad741e9526a23f3c55b946 539 SMART SM00382 26 235 1.6E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_19765 61f7e7bd43ad741e9526a23f3c55b946 539 SMART SM00382 349 516 3.3E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_19765 61f7e7bd43ad741e9526a23f3c55b946 539 Gene3D G3DSA:3.40.50.300 2 284 4.4E-62 T 11-10-2018 AMK58_19765 61f7e7bd43ad741e9526a23f3c55b946 539 ProSitePatterns PS00211 ABC transporters family signature. 162 176 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_19765 61f7e7bd43ad741e9526a23f3c55b946 539 Pfam PF12848 ABC transporter 229 308 1.2E-25 T 11-10-2018 IPR032781 ABC-transporter extension domain AMK58_21760 ff24b6f00482d8f1d2be8261dc2d3eba 211 Gene3D G3DSA:1.20.120.80 25 210 2.9E-57 T 11-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_21760 ff24b6f00482d8f1d2be8261dc2d3eba 211 SUPERFAMILY SSF81452 20 208 1.44E-59 T 11-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_21760 ff24b6f00482d8f1d2be8261dc2d3eba 211 TIGRFAM TIGR02842 CyoC: cytochrome o ubiquinol oxidase, subunit III 31 210 9.9E-82 T 11-10-2018 IPR014206 Cytochrome o ubiquinol oxidase, subunit III GO:0005886|GO:0008827|GO:0019646 AMK58_21760 ff24b6f00482d8f1d2be8261dc2d3eba 211 Pfam PF00510 Cytochrome c oxidase subunit III 29 208 4.8E-14 T 11-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_21300 a00b7d6725799abe7c9f77dc745b5bfd 413 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 19 403 8.7E-116 T 11-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 AMK58_21300 a00b7d6725799abe7c9f77dc745b5bfd 413 Pfam PF07687 Peptidase dimerisation domain 209 310 5.5E-6 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain AMK58_21300 a00b7d6725799abe7c9f77dc745b5bfd 413 Gene3D G3DSA:3.40.630.10 23 401 8.5E-138 T 11-10-2018 AMK58_21300 a00b7d6725799abe7c9f77dc745b5bfd 413 SUPERFAMILY SSF55031 211 325 5.76E-28 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain AMK58_21300 a00b7d6725799abe7c9f77dc745b5bfd 413 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 74 83 - T 11-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 AMK58_21300 a00b7d6725799abe7c9f77dc745b5bfd 413 Gene3D G3DSA:3.30.70.360 211 325 8.5E-138 T 11-10-2018 AMK58_21300 a00b7d6725799abe7c9f77dc745b5bfd 413 Pfam PF01546 Peptidase family M20/M25/M40 75 404 3.5E-29 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 AMK58_21300 a00b7d6725799abe7c9f77dc745b5bfd 413 PIRSF PIRSF001235 6 410 2.0E-128 T 11-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 AMK58_21300 a00b7d6725799abe7c9f77dc745b5bfd 413 SUPERFAMILY SSF53187 9 406 3.29E-79 T 11-10-2018 AMK58_26615 6185229cc993bceea5e3732e0252e8c8 281 Gene3D G3DSA:3.30.450.40 102 278 9.4E-51 T 11-10-2018 IPR029016 GAF-like domain superfamily AMK58_26615 6185229cc993bceea5e3732e0252e8c8 281 Pfam PF09339 IclR helix-turn-helix domain 33 83 1.5E-16 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMK58_26615 6185229cc993bceea5e3732e0252e8c8 281 SUPERFAMILY SSF46785 31 102 7.7E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_26615 6185229cc993bceea5e3732e0252e8c8 281 Gene3D G3DSA:1.10.10.10 31 92 2.8E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_26615 6185229cc993bceea5e3732e0252e8c8 281 SUPERFAMILY SSF55781 96 277 2.16E-43 T 11-10-2018 AMK58_26615 6185229cc993bceea5e3732e0252e8c8 281 Pfam PF01614 Bacterial transcriptional regulator 157 272 5.1E-31 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal AMK58_26615 6185229cc993bceea5e3732e0252e8c8 281 SMART SM00346 31 121 2.3E-21 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMK58_27725 59565e0bc6d6bea7d060ec89e3c20488 256 SMART SM00866 106 248 5.3E-20 T 11-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AMK58_27725 59565e0bc6d6bea7d060ec89e3c20488 256 SUPERFAMILY SSF46785 20 89 7.02E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_27725 59565e0bc6d6bea7d060ec89e3c20488 256 Gene3D G3DSA:1.10.10.10 14 86 3.2E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_27725 59565e0bc6d6bea7d060ec89e3c20488 256 Gene3D G3DSA:3.40.1410.10 93 253 3.0E-30 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily AMK58_27725 59565e0bc6d6bea7d060ec89e3c20488 256 Pfam PF07702 UTRA domain 112 247 1.1E-22 T 11-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AMK58_27725 59565e0bc6d6bea7d060ec89e3c20488 256 Pfam PF00392 Bacterial regulatory proteins, gntR family 22 83 1.8E-21 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_27725 59565e0bc6d6bea7d060ec89e3c20488 256 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 59 5.4E-10 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_27725 59565e0bc6d6bea7d060ec89e3c20488 256 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 59 75 5.4E-10 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_27725 59565e0bc6d6bea7d060ec89e3c20488 256 SUPERFAMILY SSF64288 73 255 1.15E-33 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily AMK58_27725 59565e0bc6d6bea7d060ec89e3c20488 256 SMART SM00345 26 85 7.1E-23 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_08575 fb731984a992ca06acc4013ea2b9b792 432 Pfam PF03781 Sulfatase-modifying factor enzyme 1 192 342 5.1E-24 T 11-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 AMK58_08575 fb731984a992ca06acc4013ea2b9b792 432 Pfam PF03781 Sulfatase-modifying factor enzyme 1 352 429 2.5E-7 T 11-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 AMK58_08575 fb731984a992ca06acc4013ea2b9b792 432 Gene3D G3DSA:3.90.1580.10 181 350 4.9E-27 T 11-10-2018 AMK58_08575 fb731984a992ca06acc4013ea2b9b792 432 Gene3D G3DSA:3.90.1580.10 351 432 2.2E-8 T 11-10-2018 AMK58_08575 fb731984a992ca06acc4013ea2b9b792 432 Pfam PF12867 DinB superfamily 25 159 6.5E-11 T 11-10-2018 IPR024775 DinB-like domain AMK58_08575 fb731984a992ca06acc4013ea2b9b792 432 SUPERFAMILY SSF109854 15 157 5.49E-6 T 11-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes AMK58_08575 fb731984a992ca06acc4013ea2b9b792 432 SUPERFAMILY SSF56436 191 431 2.83E-61 T 11-10-2018 IPR016187 C-type lectin fold AMK58_08575 fb731984a992ca06acc4013ea2b9b792 432 TIGRFAM TIGR03440 egtB_TIGR03440: ergothioneine biosynthesis protein EgtB 22 429 2.5E-139 T 11-10-2018 IPR017806 Ergothioneine biosynthesis protein EgtB GO:0052699 KEGG: 00340+1.14.99.50|MetaCyc: PWY-7255 AMK58_29110 214ea93db3be3d7e6200e1c1bd67d8d5 953 SUPERFAMILY SSF51120 455 606 2.09E-25 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_29110 214ea93db3be3d7e6200e1c1bd67d8d5 953 PRINTS PR00313 NodO calcium binding signature 345 353 8.6E-12 T 11-10-2018 AMK58_29110 214ea93db3be3d7e6200e1c1bd67d8d5 953 PRINTS PR00313 NodO calcium binding signature 381 390 8.6E-12 T 11-10-2018 AMK58_29110 214ea93db3be3d7e6200e1c1bd67d8d5 953 PRINTS PR00313 NodO calcium binding signature 182 193 8.6E-12 T 11-10-2018 AMK58_29110 214ea93db3be3d7e6200e1c1bd67d8d5 953 PRINTS PR00313 NodO calcium binding signature 309 317 8.6E-12 T 11-10-2018 AMK58_29110 214ea93db3be3d7e6200e1c1bd67d8d5 953 Gene3D G3DSA:2.150.10.10 507 655 8.6E-17 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_29110 214ea93db3be3d7e6200e1c1bd67d8d5 953 SUPERFAMILY SSF51120 569 921 1.46E-18 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_29110 214ea93db3be3d7e6200e1c1bd67d8d5 953 Pfam PF14252 Domain of unknown function (DUF4347) 4 147 4.4E-28 T 11-10-2018 IPR025592 Domain of unknown function DUF4347 AMK58_29110 214ea93db3be3d7e6200e1c1bd67d8d5 953 Gene3D G3DSA:2.150.10.10 366 444 2.1E-14 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_29110 214ea93db3be3d7e6200e1c1bd67d8d5 953 Gene3D G3DSA:2.150.10.10 319 365 1.4E-11 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_29110 214ea93db3be3d7e6200e1c1bd67d8d5 953 Gene3D G3DSA:2.150.10.10 162 258 3.0E-16 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_29110 214ea93db3be3d7e6200e1c1bd67d8d5 953 Gene3D G3DSA:2.150.10.10 445 506 1.5E-10 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_29110 214ea93db3be3d7e6200e1c1bd67d8d5 953 Gene3D G3DSA:2.150.10.10 259 318 7.6E-11 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_29110 214ea93db3be3d7e6200e1c1bd67d8d5 953 SUPERFAMILY SSF51120 164 280 1.57E-16 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_29110 214ea93db3be3d7e6200e1c1bd67d8d5 953 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 568 580 0.22 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_29110 214ea93db3be3d7e6200e1c1bd67d8d5 953 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 398 413 2.1 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_29110 214ea93db3be3d7e6200e1c1bd67d8d5 953 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 380 397 0.0021 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_29110 214ea93db3be3d7e6200e1c1bd67d8d5 953 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 477 494 0.092 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_29110 214ea93db3be3d7e6200e1c1bd67d8d5 953 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 168 183 51.0 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_29110 214ea93db3be3d7e6200e1c1bd67d8d5 953 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 362 378 0.21 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_29110 214ea93db3be3d7e6200e1c1bd67d8d5 953 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 202 219 0.088 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_29110 214ea93db3be3d7e6200e1c1bd67d8d5 953 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 184 201 0.004 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_29110 214ea93db3be3d7e6200e1c1bd67d8d5 953 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 300 316 0.016 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_29110 214ea93db3be3d7e6200e1c1bd67d8d5 953 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 504 521 0.14 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_29110 214ea93db3be3d7e6200e1c1bd67d8d5 953 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 523 539 0.099 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_29110 214ea93db3be3d7e6200e1c1bd67d8d5 953 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 541 557 2.0 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_29110 214ea93db3be3d7e6200e1c1bd67d8d5 953 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 835 851 0.063 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_29110 214ea93db3be3d7e6200e1c1bd67d8d5 953 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 326 343 0.0028 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_29110 214ea93db3be3d7e6200e1c1bd67d8d5 953 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 345 361 0.048 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_29110 214ea93db3be3d7e6200e1c1bd67d8d5 953 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 519 537 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_29110 214ea93db3be3d7e6200e1c1bd67d8d5 953 SUPERFAMILY SSF51120 273 445 2.69E-28 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_29110 214ea93db3be3d7e6200e1c1bd67d8d5 953 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 190 208 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_29110 214ea93db3be3d7e6200e1c1bd67d8d5 953 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 97 115 2.8E-5 T 11-10-2018 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 AMK58_29110 214ea93db3be3d7e6200e1c1bd67d8d5 953 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 523 544 2.8E-5 T 11-10-2018 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 AMK58_29110 214ea93db3be3d7e6200e1c1bd67d8d5 953 Gene3D G3DSA:2.150.10.10 768 934 7.1E-14 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_19230 caee2c250dab69487cfd931f9e8d0885 569 Pfam PF13382 Adenine deaminase C-terminal domain 398 564 1.0E-68 T 11-10-2018 IPR026912 Adenine deaminase C-terminal domain KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 AMK58_19230 caee2c250dab69487cfd931f9e8d0885 569 TIGRFAM TIGR01178 ade: adenine deaminase 22 568 1.3E-176 T 11-10-2018 IPR006679 Adenine deaminase GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 AMK58_19230 caee2c250dab69487cfd931f9e8d0885 569 Gene3D G3DSA:3.20.20.140 73 314 6.4E-119 T 11-10-2018 AMK58_19230 caee2c250dab69487cfd931f9e8d0885 569 SUPERFAMILY SSF51338 13 350 6.48E-15 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMK58_19230 caee2c250dab69487cfd931f9e8d0885 569 Hamap MF_01518 Adenine deaminase [ade]. 22 568 36.299 T 11-10-2018 IPR006679 Adenine deaminase GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 AMK58_19230 caee2c250dab69487cfd931f9e8d0885 569 SUPERFAMILY SSF51556 73 319 6.01E-30 T 11-10-2018 IPR032466 Metal-dependent hydrolase AMK58_19230 caee2c250dab69487cfd931f9e8d0885 569 Gene3D G3DSA:2.30.40.10 15 350 6.4E-119 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMK58_19230 caee2c250dab69487cfd931f9e8d0885 569 Pfam PF01979 Amidohydrolase family 69 350 1.7E-23 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AMK58_04130 6d631ead3df3020c4b8207c3b1ab935f 636 Gene3D G3DSA:1.10.10.760 439 483 1.1E-159 T 11-10-2018 AMK58_04130 6d631ead3df3020c4b8207c3b1ab935f 636 Pfam PF00128 Alpha amylase, catalytic domain 127 203 3.2E-10 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMK58_04130 6d631ead3df3020c4b8207c3b1ab935f 636 SMART SM00642 84 453 1.5E-12 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMK58_04130 6d631ead3df3020c4b8207c3b1ab935f 636 SUPERFAMILY SSF51445 85 515 5.28E-105 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily AMK58_04130 6d631ead3df3020c4b8207c3b1ab935f 636 Pfam PF11941 Domain of unknown function (DUF3459) 500 611 6.3E-19 T 11-10-2018 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) AMK58_04130 6d631ead3df3020c4b8207c3b1ab935f 636 Gene3D G3DSA:3.20.20.80 98 509 1.1E-159 T 11-10-2018 AMK58_04130 6d631ead3df3020c4b8207c3b1ab935f 636 TIGRFAM TIGR02402 trehalose_TreZ: malto-oligosyltrehalose trehalohydrolase 14 534 2.9E-180 T 11-10-2018 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00500+3.2.1.141|MetaCyc: PWY-2661 AMK58_04130 6d631ead3df3020c4b8207c3b1ab935f 636 Gene3D G3DSA:2.60.40.10 1 94 5.6E-20 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_04130 6d631ead3df3020c4b8207c3b1ab935f 636 SUPERFAMILY SSF81296 8 89 1.68E-14 T 11-10-2018 IPR014756 Immunoglobulin E-set AMK58_04130 6d631ead3df3020c4b8207c3b1ab935f 636 PIRSF PIRSF006337 4 545 3.3E-184 T 11-10-2018 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00500+3.2.1.141|MetaCyc: PWY-2661 AMK58_10745 98a697dd551d631f5e44f99a1eda9e20 384 SUPERFAMILY SSF53383 12 382 1.04E-99 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_10745 98a697dd551d631f5e44f99a1eda9e20 384 Gene3D G3DSA:3.40.640.10 5 384 5.2E-133 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_10745 98a697dd551d631f5e44f99a1eda9e20 384 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 95 115 1.2E-12 T 11-10-2018 AMK58_10745 98a697dd551d631f5e44f99a1eda9e20 384 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 117 138 1.2E-12 T 11-10-2018 AMK58_10745 98a697dd551d631f5e44f99a1eda9e20 384 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 163 187 1.2E-12 T 11-10-2018 AMK58_10745 98a697dd551d631f5e44f99a1eda9e20 384 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 199 222 1.2E-12 T 11-10-2018 AMK58_10745 98a697dd551d631f5e44f99a1eda9e20 384 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 231 244 - T 11-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 AMK58_10745 98a697dd551d631f5e44f99a1eda9e20 384 Pfam PF00155 Aminotransferase class I and II 35 379 7.7E-58 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMK58_10315 6d2094ed5d9051bc028f33abf78cece1 132 Gene3D G3DSA:3.30.1370.30 2 74 9.4E-23 T 11-10-2018 AMK58_10315 6d2094ed5d9051bc028f33abf78cece1 132 Pfam PF00410 Ribosomal protein S8 5 132 2.1E-47 T 11-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10315 6d2094ed5d9051bc028f33abf78cece1 132 ProSitePatterns PS00053 Ribosomal protein S8 signature. 102 119 - T 11-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10315 6d2094ed5d9051bc028f33abf78cece1 132 Gene3D G3DSA:3.30.1490.10 75 131 2.7E-25 T 11-10-2018 AMK58_10315 6d2094ed5d9051bc028f33abf78cece1 132 SUPERFAMILY SSF56047 3 132 1.31E-44 T 11-10-2018 IPR035987 Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10315 6d2094ed5d9051bc028f33abf78cece1 132 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 132 31.213 T 11-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_26520 0bd81d011651eef8e3809425ef338904 254 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 18 251 3.9E-59 T 11-10-2018 AMK58_26520 0bd81d011651eef8e3809425ef338904 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 2.8E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_26520 0bd81d011651eef8e3809425ef338904 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 2.8E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_26520 0bd81d011651eef8e3809425ef338904 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 2.8E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_26520 0bd81d011651eef8e3809425ef338904 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 2.8E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_26520 0bd81d011651eef8e3809425ef338904 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 13 30 2.8E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_26520 0bd81d011651eef8e3809425ef338904 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 2.8E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_26520 0bd81d011651eef8e3809425ef338904 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 1.8E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_26520 0bd81d011651eef8e3809425ef338904 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 1.8E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_26520 0bd81d011651eef8e3809425ef338904 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 1.8E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_26520 0bd81d011651eef8e3809425ef338904 254 SUPERFAMILY SSF51735 6 253 2.62E-77 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_26520 0bd81d011651eef8e3809425ef338904 254 TIGRFAM TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase 7 254 8.0E-124 T 11-10-2018 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase GO:0008678|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.127|MetaCyc: PWY-6507|MetaCyc: PWY-7562 AMK58_26520 0bd81d011651eef8e3809425ef338904 254 Gene3D G3DSA:3.40.50.720 10 253 1.8E-78 T 11-10-2018 AMK58_26520 0bd81d011651eef8e3809425ef338904 254 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 146 174 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMK58_05650 4de9899d25c81475f7213806cfe43e15 613 Pfam PF00654 Voltage gated chloride channel 100 439 9.6E-55 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AMK58_05650 4de9899d25c81475f7213806cfe43e15 613 PRINTS PR00762 Chloride channel signature 142 161 5.9E-5 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AMK58_05650 4de9899d25c81475f7213806cfe43e15 613 PRINTS PR00762 Chloride channel signature 193 212 5.9E-5 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AMK58_05650 4de9899d25c81475f7213806cfe43e15 613 Gene3D G3DSA:1.10.3080.10 43 453 7.4E-61 T 11-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 AMK58_05650 4de9899d25c81475f7213806cfe43e15 613 Gene3D G3DSA:3.10.580.10 469 590 1.1E-6 T 11-10-2018 AMK58_05650 4de9899d25c81475f7213806cfe43e15 613 SUPERFAMILY SSF54631 470 599 4.95E-9 T 11-10-2018 AMK58_05650 4de9899d25c81475f7213806cfe43e15 613 SUPERFAMILY SSF81340 28 462 3.14E-78 T 11-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 AMK58_04370 096c8ac320ae9edf4920d530d05197a6 159 Pfam PF00430 ATP synthase B/B' CF(0) 7 134 3.0E-26 T 11-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 AMK58_04370 096c8ac320ae9edf4920d530d05197a6 159 Hamap MF_01398 ATP synthase subunit b [atpF]. 1 136 11.508 T 11-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 AMK58_02030 5bea6bfb5f2cc0dfc117c7d2a2d57893 283 Gene3D G3DSA:3.40.50.150 54 268 1.1E-51 T 11-10-2018 AMK58_02030 5bea6bfb5f2cc0dfc117c7d2a2d57893 283 SUPERFAMILY SSF53335 51 276 4.41E-34 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_02030 5bea6bfb5f2cc0dfc117c7d2a2d57893 283 Gene3D G3DSA:2.20.25.570 166 235 1.1E-51 T 11-10-2018 AMK58_02030 5bea6bfb5f2cc0dfc117c7d2a2d57893 283 Pfam PF13649 Methyltransferase domain 58 158 8.8E-17 T 11-10-2018 AMK58_07175 f1fa62db820088153e02ab87ce94245b 174 Pfam PF01047 MarR family 55 112 4.5E-10 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_07175 f1fa62db820088153e02ab87ce94245b 174 SMART SM00347 47 147 1.7E-20 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_07175 f1fa62db820088153e02ab87ce94245b 174 Gene3D G3DSA:1.10.10.10 22 162 2.7E-35 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_07175 f1fa62db820088153e02ab87ce94245b 174 PRINTS PR00598 Bacterial regulatory protein MarR family signature 137 157 5.7E-8 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_07175 f1fa62db820088153e02ab87ce94245b 174 PRINTS PR00598 Bacterial regulatory protein MarR family signature 71 87 5.7E-8 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_07175 f1fa62db820088153e02ab87ce94245b 174 PRINTS PR00598 Bacterial regulatory protein MarR family signature 88 103 5.7E-8 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_07175 f1fa62db820088153e02ab87ce94245b 174 PRINTS PR00598 Bacterial regulatory protein MarR family signature 107 123 5.7E-8 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_07175 f1fa62db820088153e02ab87ce94245b 174 SUPERFAMILY SSF46785 28 162 9.26E-33 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_19670 67a8e19623bc35d49550f1607079cfac 508 Gene3D G3DSA:1.20.1250.20 259 425 3.9E-18 T 11-10-2018 AMK58_19670 67a8e19623bc35d49550f1607079cfac 508 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 9 493 1.0E-139 T 11-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 AMK58_19670 67a8e19623bc35d49550f1607079cfac 508 Gene3D G3DSA:1.20.1720.10 9 244 3.6E-37 T 11-10-2018 AMK58_19670 67a8e19623bc35d49550f1607079cfac 508 SUPERFAMILY SSF103473 3 498 4.71E-59 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_19670 67a8e19623bc35d49550f1607079cfac 508 Pfam PF07690 Major Facilitator Superfamily 14 406 1.6E-45 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMK58_09980 b879ab5891bd726ff485afb117a7ac29 183 Gene3D G3DSA:1.10.3210.10 3 175 1.2E-55 T 11-10-2018 AMK58_09980 b879ab5891bd726ff485afb117a7ac29 183 SUPERFAMILY SSF109604 7 171 2.86E-43 T 11-10-2018 AMK58_09980 b879ab5891bd726ff485afb117a7ac29 183 Pfam PF13328 HD domain 10 137 2.5E-23 T 11-10-2018 IPR003607 HD/PDEase domain AMK58_09980 b879ab5891bd726ff485afb117a7ac29 183 SMART SM00471 27 135 1.3E-9 T 11-10-2018 IPR003607 HD/PDEase domain AMK58_18585 49889757cab84b9a25c294f79c7ce3f1 426 SUPERFAMILY SSF51604 139 408 4.08E-93 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMK58_18585 49889757cab84b9a25c294f79c7ce3f1 426 SUPERFAMILY SSF54826 3 135 5.3E-44 T 11-10-2018 AMK58_18585 49889757cab84b9a25c294f79c7ce3f1 426 Hamap MF_00318 Enolase [eno]. 2 410 38.067 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_18585 49889757cab84b9a25c294f79c7ce3f1 426 Pfam PF00113 Enolase, C-terminal TIM barrel domain 140 408 3.8E-80 T 11-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_18585 49889757cab84b9a25c294f79c7ce3f1 426 PRINTS PR00148 Enolase signature 160 173 1.1E-28 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_18585 49889757cab84b9a25c294f79c7ce3f1 426 PRINTS PR00148 Enolase signature 106 122 1.1E-28 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_18585 49889757cab84b9a25c294f79c7ce3f1 426 PRINTS PR00148 Enolase signature 310 321 1.1E-28 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_18585 49889757cab84b9a25c294f79c7ce3f1 426 PRINTS PR00148 Enolase signature 333 347 1.1E-28 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_18585 49889757cab84b9a25c294f79c7ce3f1 426 PRINTS PR00148 Enolase signature 37 51 1.1E-28 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_18585 49889757cab84b9a25c294f79c7ce3f1 426 PRINTS PR00148 Enolase signature 362 379 1.1E-28 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_18585 49889757cab84b9a25c294f79c7ce3f1 426 SMART SM01192 138 421 2.0E-128 T 11-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_18585 49889757cab84b9a25c294f79c7ce3f1 426 SMART SM01193 4 133 1.8E-70 T 11-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_18585 49889757cab84b9a25c294f79c7ce3f1 426 Gene3D G3DSA:3.20.20.120 127 419 1.0E-98 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMK58_18585 49889757cab84b9a25c294f79c7ce3f1 426 Pfam PF03952 Enolase, N-terminal domain 4 133 1.5E-45 T 11-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_18585 49889757cab84b9a25c294f79c7ce3f1 426 PIRSF PIRSF001400 1 411 7.2E-139 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_18585 49889757cab84b9a25c294f79c7ce3f1 426 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 408 6.5E-137 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_18585 49889757cab84b9a25c294f79c7ce3f1 426 Gene3D G3DSA:3.30.390.10 1 126 5.8E-44 T 11-10-2018 IPR029017 Enolase-like, N-terminal AMK58_12715 24211c9d19f7a4d38ed60c0f10e369a6 636 Pfam PF01757 Acyltransferase family 5 327 6.8E-26 T 11-10-2018 IPR002656 Acyltransferase 3 GO:0016747 AMK58_12715 24211c9d19f7a4d38ed60c0f10e369a6 636 SUPERFAMILY SSF52266 429 628 1.58E-5 T 11-10-2018 AMK58_14315 edbdba9aaca79e9f8b3ef42fb56c81fb 376 SUPERFAMILY SSF55979 255 376 4.83E-36 T 11-10-2018 AMK58_14315 edbdba9aaca79e9f8b3ef42fb56c81fb 376 Gene3D G3DSA:3.10.150.10 1 252 3.7E-119 T 11-10-2018 AMK58_14315 edbdba9aaca79e9f8b3ef42fb56c81fb 376 SUPERFAMILY SSF55979 128 254 2.66E-26 T 11-10-2018 AMK58_14315 edbdba9aaca79e9f8b3ef42fb56c81fb 376 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 256 375 8.7E-34 T 11-10-2018 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 AMK58_14315 edbdba9aaca79e9f8b3ef42fb56c81fb 376 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 120 1.5E-33 T 11-10-2018 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 AMK58_14315 edbdba9aaca79e9f8b3ef42fb56c81fb 376 Pfam PF02767 DNA polymerase III beta subunit, central domain 133 253 2.0E-31 T 11-10-2018 IPR022637 DNA polymerase III, beta sliding clamp, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 AMK58_14315 edbdba9aaca79e9f8b3ef42fb56c81fb 376 SMART SM00480 17 372 1.3E-126 T 11-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 AMK58_14315 edbdba9aaca79e9f8b3ef42fb56c81fb 376 SUPERFAMILY SSF55979 1 118 2.22E-26 T 11-10-2018 AMK58_14315 edbdba9aaca79e9f8b3ef42fb56c81fb 376 Gene3D G3DSA:3.70.10.10 139 374 3.7E-119 T 11-10-2018 AMK58_14315 edbdba9aaca79e9f8b3ef42fb56c81fb 376 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 375 2.3E-87 T 11-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 AMK58_14315 edbdba9aaca79e9f8b3ef42fb56c81fb 376 PIRSF PIRSF000804 1 376 1.6E-119 T 11-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 AMK58_14135 ba57f8c831e3c0a22878aa03aa533db5 95 Pfam PF11804 Protein of unknown function (DUF3325) 4 92 1.2E-18 T 11-10-2018 IPR021762 Protein of unknown function DUF3325 AMK58_21085 e06b5466740dcf6dcb14e5f641c61bc9 304 Gene3D G3DSA:3.10.580.10 182 301 9.1E-42 T 11-10-2018 AMK58_21085 e06b5466740dcf6dcb14e5f641c61bc9 304 Gene3D G3DSA:3.40.50.10490 1 181 3.1E-58 T 11-10-2018 AMK58_21085 e06b5466740dcf6dcb14e5f641c61bc9 304 Pfam PF01380 SIS domain 30 156 8.5E-29 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AMK58_21085 e06b5466740dcf6dcb14e5f641c61bc9 304 SUPERFAMILY SSF53697 2 287 1.07E-62 T 11-10-2018 AMK58_21085 e06b5466740dcf6dcb14e5f641c61bc9 304 PIRSF PIRSF004692 1 304 5.0E-125 T 11-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 AMK58_21085 e06b5466740dcf6dcb14e5f641c61bc9 304 SMART SM00116 256 303 0.021 T 11-10-2018 IPR000644 CBS domain AMK58_21085 e06b5466740dcf6dcb14e5f641c61bc9 304 SMART SM00116 193 241 0.0086 T 11-10-2018 IPR000644 CBS domain AMK58_21085 e06b5466740dcf6dcb14e5f641c61bc9 304 Pfam PF00571 CBS domain 184 240 2.6E-6 T 11-10-2018 IPR000644 CBS domain AMK58_21085 e06b5466740dcf6dcb14e5f641c61bc9 304 Pfam PF00571 CBS domain 251 301 1.5E-9 T 11-10-2018 IPR000644 CBS domain AMK58_21085 e06b5466740dcf6dcb14e5f641c61bc9 304 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 29 294 5.0E-90 T 11-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 AMK58_20505 5aeb4d52eb7fed350daa9d495b29d608 253 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 144 208 5.5E-5 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMK58_20505 5aeb4d52eb7fed350daa9d495b29d608 253 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 126 1.2E-28 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMK58_20505 5aeb4d52eb7fed350daa9d495b29d608 253 PIRSF PIRSF000709 2 107 2.8E-4 T 11-10-2018 AMK58_20505 5aeb4d52eb7fed350daa9d495b29d608 253 PIRSF PIRSF000709 143 230 2.9 T 11-10-2018 AMK58_20505 5aeb4d52eb7fed350daa9d495b29d608 253 TIGRFAM TIGR01258 pgm_1: phosphoglycerate mutase 1 family 3 230 1.2E-101 T 11-10-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 AMK58_20505 5aeb4d52eb7fed350daa9d495b29d608 253 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 6 15 - T 11-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 AMK58_20505 5aeb4d52eb7fed350daa9d495b29d608 253 SUPERFAMILY SSF53254 1 226 1.0E-69 T 11-10-2018 IPR029033 Histidine phosphatase superfamily AMK58_20505 5aeb4d52eb7fed350daa9d495b29d608 253 SMART SM00855 3 189 8.3E-23 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMK58_20505 5aeb4d52eb7fed350daa9d495b29d608 253 Hamap MF_01039 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 1 228 43.913 T 11-10-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 AMK58_20505 5aeb4d52eb7fed350daa9d495b29d608 253 Gene3D G3DSA:3.40.50.1240 1 236 2.7E-78 T 11-10-2018 IPR029033 Histidine phosphatase superfamily AMK58_08755 68878298217dfa0b2c602843145b2fcb 532 SMART SM00283 272 526 3.0E-36 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_08755 68878298217dfa0b2c602843145b2fcb 532 Gene3D G3DSA:1.10.287.950 238 531 1.9E-49 T 11-10-2018 AMK58_08755 68878298217dfa0b2c602843145b2fcb 532 SUPERFAMILY SSF58104 211 525 4.19E-55 T 11-10-2018 AMK58_08755 68878298217dfa0b2c602843145b2fcb 532 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 102 514 6.0E-4 T 11-10-2018 AMK58_08755 68878298217dfa0b2c602843145b2fcb 532 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 350 503 3.1E-29 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_08755 68878298217dfa0b2c602843145b2fcb 532 Pfam PF00672 HAMP domain 184 233 2.1E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_08755 68878298217dfa0b2c602843145b2fcb 532 Gene3D G3DSA:1.10.8.500 183 234 3.6E-14 T 11-10-2018 AMK58_08755 68878298217dfa0b2c602843145b2fcb 532 SMART SM00304 264 338 57.0 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_08755 68878298217dfa0b2c602843145b2fcb 532 SMART SM00304 183 236 7.8E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_21030 8803c08826dd1c02f2d52c813f476326 435 SUPERFAMILY SSF47413 24 94 2.19E-6 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMK58_21030 8803c08826dd1c02f2d52c813f476326 435 SMART SM00530 27 88 4.1E-5 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMK58_21030 8803c08826dd1c02f2d52c813f476326 435 Pfam PF13413 Helix-turn-helix domain 28 87 7.2E-23 T 11-10-2018 AMK58_21030 8803c08826dd1c02f2d52c813f476326 435 Pfam PF13464 Domain of unknown function (DUF4115) 348 417 1.6E-15 T 11-10-2018 IPR025194 Domain of unknown function DUF4115 AMK58_21030 8803c08826dd1c02f2d52c813f476326 435 Gene3D G3DSA:1.10.260.40 17 106 1.9E-25 T 11-10-2018 AMK58_08135 0de6de8032be7766a78792481691d03d 130 Pfam PF13411 MerR HTH family regulatory protein 5 70 1.1E-17 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMK58_08135 0de6de8032be7766a78792481691d03d 130 SMART SM00422 5 72 7.9E-23 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMK58_08135 0de6de8032be7766a78792481691d03d 130 SUPERFAMILY SSF46955 4 105 9.16E-26 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily AMK58_08135 0de6de8032be7766a78792481691d03d 130 Gene3D G3DSA:1.10.1660.10 4 128 4.4E-28 T 11-10-2018 AMK58_29075 bf2d559d9ea76707a8c75e03458df086 301 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 8 301 3.1E-159 T 11-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 AMK58_29075 bf2d559d9ea76707a8c75e03458df086 301 Hamap MF_00064 Sulfate adenylyltransferase subunit 2 [cysD]. 3 301 58.751 T 11-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 AMK58_29075 bf2d559d9ea76707a8c75e03458df086 301 PIRSF PIRSF002936 1 301 1.0E-144 T 11-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 AMK58_29075 bf2d559d9ea76707a8c75e03458df086 301 Gene3D G3DSA:3.40.50.620 7 211 2.6E-59 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_29075 bf2d559d9ea76707a8c75e03458df086 301 SUPERFAMILY SSF52402 7 209 1.68E-68 T 11-10-2018 AMK58_29075 bf2d559d9ea76707a8c75e03458df086 301 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 29 255 1.9E-61 T 11-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 AMK58_04895 bf0c02888ed70693dcdf7c84d856bf8f 220 Gene3D G3DSA:3.40.50.1820 2 217 1.8E-66 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_04895 bf0c02888ed70693dcdf7c84d856bf8f 220 Pfam PF00326 Prolyl oligopeptidase family 147 212 2.5E-5 T 11-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 AMK58_04895 bf0c02888ed70693dcdf7c84d856bf8f 220 SUPERFAMILY SSF53474 4 211 1.25E-49 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_04895 bf0c02888ed70693dcdf7c84d856bf8f 220 Pfam PF12146 Serine aminopeptidase, S33 47 133 4.4E-9 T 11-10-2018 IPR022742 Serine aminopeptidase, S33 AMK58_05070 a37b74f3f2dc0efded7d5e82b0634033 360 SUPERFAMILY SSF53756 25 350 6.28E-43 T 11-10-2018 AMK58_05070 a37b74f3f2dc0efded7d5e82b0634033 360 Gene3D G3DSA:3.40.50.2000 19 347 5.5E-51 T 11-10-2018 AMK58_05070 a37b74f3f2dc0efded7d5e82b0634033 360 Gene3D G3DSA:3.40.50.2000 166 342 5.5E-51 T 11-10-2018 AMK58_05070 a37b74f3f2dc0efded7d5e82b0634033 360 Pfam PF13692 Glycosyl transferases group 1 183 314 5.9E-20 T 11-10-2018 AMK58_23775 1c6a16107a85e0b6ed5d31d6b1cd1b19 664 SMART SM00283 191 438 4.6E-34 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_23775 1c6a16107a85e0b6ed5d31d6b1cd1b19 664 Pfam PF11563 Protoglobin 14 164 2.3E-27 T 11-10-2018 AMK58_23775 1c6a16107a85e0b6ed5d31d6b1cd1b19 664 Pfam PF07238 PilZ domain 455 526 7.0E-5 T 11-10-2018 IPR009875 PilZ domain GO:0035438 AMK58_23775 1c6a16107a85e0b6ed5d31d6b1cd1b19 664 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 260 417 8.3E-30 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_23775 1c6a16107a85e0b6ed5d31d6b1cd1b19 664 Gene3D G3DSA:1.10.490.10 12 166 1.5E-37 T 11-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 AMK58_23775 1c6a16107a85e0b6ed5d31d6b1cd1b19 664 SUPERFAMILY SSF46458 14 158 3.08E-29 T 11-10-2018 IPR009050 Globin-like superfamily AMK58_23775 1c6a16107a85e0b6ed5d31d6b1cd1b19 664 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 366 395 3.6E-9 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_23775 1c6a16107a85e0b6ed5d31d6b1cd1b19 664 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 219 248 3.6E-9 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_23775 1c6a16107a85e0b6ed5d31d6b1cd1b19 664 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 318 347 3.6E-9 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_23775 1c6a16107a85e0b6ed5d31d6b1cd1b19 664 Gene3D G3DSA:1.20.120.30 544 651 7.4E-7 T 11-10-2018 AMK58_23775 1c6a16107a85e0b6ed5d31d6b1cd1b19 664 Pfam PF13682 Chemoreceptor zinc-binding domain 553 618 2.6E-12 T 11-10-2018 IPR025991 Chemoreceptor zinc-binding domain AMK58_23775 1c6a16107a85e0b6ed5d31d6b1cd1b19 664 SUPERFAMILY SSF58104 154 439 1.83E-54 T 11-10-2018 AMK58_23775 1c6a16107a85e0b6ed5d31d6b1cd1b19 664 Gene3D G3DSA:1.10.287.950 167 453 2.5E-49 T 11-10-2018 AMK58_19285 1e354e2e629b94a99c03a1e4065ceb3f 90 SUPERFAMILY SSF159127 1 83 1.44E-19 T 11-10-2018 IPR037254 HupF/HypC superfamily AMK58_19285 1e354e2e629b94a99c03a1e4065ceb3f 90 Gene3D G3DSA:2.40.50.970 1 74 1.4E-15 T 11-10-2018 IPR037254 HupF/HypC superfamily AMK58_19285 1e354e2e629b94a99c03a1e4065ceb3f 90 ProSitePatterns PS01097 Hydrogenases expression/synthesis hupF/hypC family signature. 1 9 - T 11-10-2018 IPR019812 Hydrogenase assembly chaperone, conserved site AMK58_19285 1e354e2e629b94a99c03a1e4065ceb3f 90 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 2 9 6.1E-10 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC AMK58_19285 1e354e2e629b94a99c03a1e4065ceb3f 90 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 38 54 6.1E-10 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC AMK58_19285 1e354e2e629b94a99c03a1e4065ceb3f 90 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 17 33 6.1E-10 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC AMK58_19285 1e354e2e629b94a99c03a1e4065ceb3f 90 TIGRFAM TIGR00074 hypC_hupF: hydrogenase assembly chaperone HypC/HupF 1 74 4.9E-17 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC AMK58_19285 1e354e2e629b94a99c03a1e4065ceb3f 90 Pfam PF01455 HupF/HypC family 1 59 1.8E-18 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC AMK58_21960 69d45a3ff2096d86d3dfbc5413c3ea90 332 SUPERFAMILY SSF46785 13 99 5.52E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_21960 69d45a3ff2096d86d3dfbc5413c3ea90 332 Gene3D G3DSA:3.40.190.10 173 280 3.1E-22 T 11-10-2018 AMK58_21960 69d45a3ff2096d86d3dfbc5413c3ea90 332 Gene3D G3DSA:1.10.10.10 9 87 6.6E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_21960 69d45a3ff2096d86d3dfbc5413c3ea90 332 SUPERFAMILY SSF53850 100 312 5.58E-31 T 11-10-2018 AMK58_21960 69d45a3ff2096d86d3dfbc5413c3ea90 332 Pfam PF03466 LysR substrate binding domain 99 306 4.7E-28 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_21960 69d45a3ff2096d86d3dfbc5413c3ea90 332 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 15 74 8.9E-21 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_21960 69d45a3ff2096d86d3dfbc5413c3ea90 332 Gene3D G3DSA:3.40.190.10 103 303 3.1E-22 T 11-10-2018 AMK58_21960 69d45a3ff2096d86d3dfbc5413c3ea90 332 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 41 1.1E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_21960 69d45a3ff2096d86d3dfbc5413c3ea90 332 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 51 1.1E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_21960 69d45a3ff2096d86d3dfbc5413c3ea90 332 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 51 62 1.1E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_08220 4841544a42718c60e873dac6edaf0f44 592 SUPERFAMILY SSF51206 447 571 1.31E-29 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like AMK58_08220 4841544a42718c60e873dac6edaf0f44 592 Pfam PF00027 Cyclic nucleotide-binding domain 478 557 4.9E-18 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_08220 4841544a42718c60e873dac6edaf0f44 592 SMART SM00100 457 572 7.7E-21 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_08220 4841544a42718c60e873dac6edaf0f44 592 Gene3D G3DSA:1.20.1530.20 6 410 6.1E-75 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily AMK58_08220 4841544a42718c60e873dac6edaf0f44 592 Pfam PF00999 Sodium/hydrogen exchanger family 14 397 1.6E-69 T 11-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AMK58_08220 4841544a42718c60e873dac6edaf0f44 592 ProSitePatterns PS00888 Cyclic nucleotide-binding domain signature 1. 484 500 - T 11-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site AMK58_08220 4841544a42718c60e873dac6edaf0f44 592 Gene3D G3DSA:2.60.120.10 420 583 2.3E-31 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_20765 d26e7235a4adcb3ddf5321b83d8a8ef8 339 SUPERFAMILY SSF81345 9 333 1.05E-66 T 11-10-2018 IPR037294 ABC transporter, BtuC-like AMK58_20765 d26e7235a4adcb3ddf5321b83d8a8ef8 339 Pfam PF01032 FecCD transport family 24 333 7.6E-76 T 11-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 AMK58_20765 d26e7235a4adcb3ddf5321b83d8a8ef8 339 Gene3D G3DSA:1.10.3470.10 10 338 6.4E-81 T 11-10-2018 IPR037294 ABC transporter, BtuC-like AMK58_02255 a29b4c498675e25ae4210ebb7a2ab33d 445 Pfam PF13416 Bacterial extracellular solute-binding protein 49 358 9.5E-34 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMK58_02255 a29b4c498675e25ae4210ebb7a2ab33d 445 SUPERFAMILY SSF53850 32 432 9.24E-72 T 11-10-2018 AMK58_02255 a29b4c498675e25ae4210ebb7a2ab33d 445 Gene3D G3DSA:3.40.190.10 150 431 2.8E-130 T 11-10-2018 AMK58_02255 a29b4c498675e25ae4210ebb7a2ab33d 445 Gene3D G3DSA:3.40.190.10 34 390 2.8E-130 T 11-10-2018 AMK58_27010 deed5abad942fb42b7179fa7d4a1a4b0 835 Pfam PF00391 PEP-utilising enzyme, mobile domain 419 490 2.4E-20 T 11-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AMK58_27010 deed5abad942fb42b7179fa7d4a1a4b0 835 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 723 738 1.6E-18 T 11-10-2018 AMK58_27010 deed5abad942fb42b7179fa7d4a1a4b0 835 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 558 577 1.6E-18 T 11-10-2018 AMK58_27010 deed5abad942fb42b7179fa7d4a1a4b0 835 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 706 721 1.6E-18 T 11-10-2018 AMK58_27010 deed5abad942fb42b7179fa7d4a1a4b0 835 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 759 771 1.6E-18 T 11-10-2018 AMK58_27010 deed5abad942fb42b7179fa7d4a1a4b0 835 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 47 63 - T 11-10-2018 IPR002178 PTS EIIA type-2 domain AMK58_27010 deed5abad942fb42b7179fa7d4a1a4b0 835 Gene3D G3DSA:3.50.30.10 273 497 2.6E-67 T 11-10-2018 AMK58_27010 deed5abad942fb42b7179fa7d4a1a4b0 835 SUPERFAMILY SSF52009 391 502 1.96E-28 T 11-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 AMK58_27010 deed5abad942fb42b7179fa7d4a1a4b0 835 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 706 724 - T 11-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 AMK58_27010 deed5abad942fb42b7179fa7d4a1a4b0 835 Gene3D G3DSA:3.30.1340.10 160 239 1.8E-23 T 11-10-2018 IPR035895 HPr-like superfamily AMK58_27010 deed5abad942fb42b7179fa7d4a1a4b0 835 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 164 238 4.9E-21 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like AMK58_27010 deed5abad942fb42b7179fa7d4a1a4b0 835 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 449 460 - T 11-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 AMK58_27010 deed5abad942fb42b7179fa7d4a1a4b0 835 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 196 211 - T 11-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site AMK58_27010 deed5abad942fb42b7179fa7d4a1a4b0 835 Pfam PF00381 PTS HPr component phosphorylation site 162 238 1.9E-21 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like AMK58_27010 deed5abad942fb42b7179fa7d4a1a4b0 835 PRINTS PR00107 Phosphocarrier protein signature 210 227 1.5E-15 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like AMK58_27010 deed5abad942fb42b7179fa7d4a1a4b0 835 PRINTS PR00107 Phosphocarrier protein signature 195 210 1.5E-15 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like AMK58_27010 deed5abad942fb42b7179fa7d4a1a4b0 835 PRINTS PR00107 Phosphocarrier protein signature 170 186 1.5E-15 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like AMK58_27010 deed5abad942fb42b7179fa7d4a1a4b0 835 Gene3D G3DSA:3.20.20.60 498 832 2.4E-113 T 11-10-2018 AMK58_27010 deed5abad942fb42b7179fa7d4a1a4b0 835 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 170 177 - T 11-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site AMK58_27010 deed5abad942fb42b7179fa7d4a1a4b0 835 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 521 799 2.0E-106 T 11-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 AMK58_27010 deed5abad942fb42b7179fa7d4a1a4b0 835 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 271 824 6.1E-155 T 11-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 AMK58_27010 deed5abad942fb42b7179fa7d4a1a4b0 835 Pfam PF05524 PEP-utilising enzyme, N-terminal 273 391 5.9E-25 T 11-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 AMK58_27010 deed5abad942fb42b7179fa7d4a1a4b0 835 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 5 140 3.3E-28 T 11-10-2018 IPR002178 PTS EIIA type-2 domain AMK58_27010 deed5abad942fb42b7179fa7d4a1a4b0 835 SUPERFAMILY SSF55594 162 244 2.36E-22 T 11-10-2018 IPR035895 HPr-like superfamily AMK58_27010 deed5abad942fb42b7179fa7d4a1a4b0 835 SUPERFAMILY SSF47831 298 406 4.71E-27 T 11-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 AMK58_27010 deed5abad942fb42b7179fa7d4a1a4b0 835 Gene3D G3DSA:1.10.274.10 290 411 2.6E-67 T 11-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 AMK58_27010 deed5abad942fb42b7179fa7d4a1a4b0 835 SUPERFAMILY SSF55804 4 141 1.29E-36 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 AMK58_27010 deed5abad942fb42b7179fa7d4a1a4b0 835 Gene3D G3DSA:3.40.930.10 1 142 1.5E-36 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 AMK58_27010 deed5abad942fb42b7179fa7d4a1a4b0 835 SUPERFAMILY SSF51621 522 808 3.4E-99 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMK58_20485 517eab52b313be4fc9eda20d2c4e9456 761 Gene3D G3DSA:3.20.20.80 155 596 4.3E-183 T 11-10-2018 AMK58_20485 517eab52b313be4fc9eda20d2c4e9456 761 SUPERFAMILY SSF81296 19 165 9.52E-51 T 11-10-2018 IPR014756 Immunoglobulin E-set AMK58_20485 517eab52b313be4fc9eda20d2c4e9456 761 SUPERFAMILY SSF51011 603 710 5.11E-25 T 11-10-2018 AMK58_20485 517eab52b313be4fc9eda20d2c4e9456 761 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 19 710 0.0 T 11-10-2018 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 AMK58_20485 517eab52b313be4fc9eda20d2c4e9456 761 Gene3D G3DSA:2.60.40.1180 602 710 1.5E-18 T 11-10-2018 IPR013780 Glycosyl hydrolase, all-beta AMK58_20485 517eab52b313be4fc9eda20d2c4e9456 761 SUPERFAMILY SSF51445 151 591 9.17E-139 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily AMK58_20485 517eab52b313be4fc9eda20d2c4e9456 761 SMART SM00642 176 582 1.8E-8 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMK58_20485 517eab52b313be4fc9eda20d2c4e9456 761 Pfam PF00128 Alpha amylase, catalytic domain 196 306 1.8E-11 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMK58_20485 517eab52b313be4fc9eda20d2c4e9456 761 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 23 111 4.2E-20 T 11-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 AMK58_20485 517eab52b313be4fc9eda20d2c4e9456 761 Gene3D G3DSA:2.60.40.10 9 154 7.5E-53 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_05475 04a0c15564ff7672dae2b2897560d061 315 TIGRFAM TIGR01932 hflC: HflC protein 144 282 1.2E-42 T 11-10-2018 IPR010200 HflC GO:0016021|GO:0052547 AMK58_05475 04a0c15564ff7672dae2b2897560d061 315 SMART SM00244 21 183 5.4E-35 T 11-10-2018 IPR001107 Band 7 domain AMK58_05475 04a0c15564ff7672dae2b2897560d061 315 PIRSF PIRSF005651 1 287 1.2E-90 T 11-10-2018 IPR010200 HflC GO:0016021|GO:0052547 AMK58_05475 04a0c15564ff7672dae2b2897560d061 315 Gene3D G3DSA:3.30.479.30 50 185 2.9E-25 T 11-10-2018 AMK58_05475 04a0c15564ff7672dae2b2897560d061 315 SUPERFAMILY SSF117892 53 190 2.09E-28 T 11-10-2018 IPR036013 Band 7/SPFH domain superfamily AMK58_05475 04a0c15564ff7672dae2b2897560d061 315 PRINTS PR00721 Stomatin signature 159 177 1.2E-5 T 11-10-2018 IPR001972 Stomatin family GO:0016020 AMK58_05475 04a0c15564ff7672dae2b2897560d061 315 PRINTS PR00721 Stomatin signature 178 199 1.2E-5 T 11-10-2018 IPR001972 Stomatin family GO:0016020 AMK58_05475 04a0c15564ff7672dae2b2897560d061 315 PRINTS PR00721 Stomatin signature 76 97 1.2E-5 T 11-10-2018 IPR001972 Stomatin family GO:0016020 AMK58_05475 04a0c15564ff7672dae2b2897560d061 315 Pfam PF01145 SPFH domain / Band 7 family 25 200 5.0E-31 T 11-10-2018 IPR001107 Band 7 domain AMK58_10260 14b4c2a07854c522006d1061dcbdd260 376 Gene3D G3DSA:3.30.590.20 1 365 6.1E-107 T 11-10-2018 AMK58_10260 14b4c2a07854c522006d1061dcbdd260 376 SUPERFAMILY SSF55931 3 370 1.49E-106 T 11-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 AMK58_10260 14b4c2a07854c522006d1061dcbdd260 376 Hamap MF_01609 Glutamate--cysteine ligase [gshA]. 1 376 89.54 T 11-10-2018 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AMK58_10260 14b4c2a07854c522006d1061dcbdd260 376 TIGRFAM TIGR02050 gshA_cyan_rel: carboxylate-amine ligase, YbdK family 6 291 1.1E-92 T 11-10-2018 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AMK58_10260 14b4c2a07854c522006d1061dcbdd260 376 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 7 287 4.8E-53 T 11-10-2018 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AMK58_13690 e3fba6e989de501b598fe7d71c4b739b 391 Pfam PF08495 FIST N domain 44 236 4.9E-26 T 11-10-2018 IPR013702 FIST domain, N-terminal AMK58_13690 e3fba6e989de501b598fe7d71c4b739b 391 SMART SM00897 43 237 2.5E-24 T 11-10-2018 IPR013702 FIST domain, N-terminal AMK58_13690 e3fba6e989de501b598fe7d71c4b739b 391 Pfam PF10442 FIST C domain 238 376 2.4E-26 T 11-10-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 AMK58_13690 e3fba6e989de501b598fe7d71c4b739b 391 PIRSF PIRSF018953 6 391 1.4E-51 T 11-10-2018 IPR016741 Uncharacterised conserved protein UCP018953 AMK58_13690 e3fba6e989de501b598fe7d71c4b739b 391 SMART SM01204 238 378 1.3E-37 T 11-10-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 AMK58_01400 63d94a8865218d4873b9017dad2a956d 289 Pfam PF00892 EamA-like transporter family 3 133 5.3E-15 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_01400 63d94a8865218d4873b9017dad2a956d 289 Pfam PF00892 EamA-like transporter family 143 271 4.8E-9 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_01400 63d94a8865218d4873b9017dad2a956d 289 SUPERFAMILY SSF103481 179 275 4.32E-13 T 11-10-2018 AMK58_01400 63d94a8865218d4873b9017dad2a956d 289 SUPERFAMILY SSF103481 36 137 5.1E-16 T 11-10-2018 AMK58_27850 99aa03243effb40dfda88fc51edd6a63 181 Pfam PF01814 Hemerythrin HHE cation binding domain 10 145 7.4E-16 T 11-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 AMK58_27850 99aa03243effb40dfda88fc51edd6a63 181 Gene3D G3DSA:1.20.120.520 2 163 3.7E-18 T 11-10-2018 AMK58_03985 ce34153f337c2a7687f5758d6d993b53 608 Gene3D G3DSA:3.40.50.300 251 519 2.1E-60 T 11-10-2018 AMK58_03985 ce34153f337c2a7687f5758d6d993b53 608 Gene3D G3DSA:3.40.50.300 2 231 6.0E-57 T 11-10-2018 AMK58_03985 ce34153f337c2a7687f5758d6d993b53 608 Gene3D G3DSA:1.10.287.380 520 602 3.1E-23 T 11-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 AMK58_03985 ce34153f337c2a7687f5758d6d993b53 608 SUPERFAMILY SSF52540 10 201 3.93E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_03985 ce34153f337c2a7687f5758d6d993b53 608 ProSitePatterns PS00211 ABC transporters family signature. 413 427 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_03985 ce34153f337c2a7687f5758d6d993b53 608 SUPERFAMILY SSF52540 282 493 8.0E-45 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_03985 ce34153f337c2a7687f5758d6d993b53 608 Pfam PF16326 ABC transporter C-terminal domain 529 597 6.5E-21 T 11-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 AMK58_03985 ce34153f337c2a7687f5758d6d993b53 608 Pfam PF00005 ABC transporter 24 152 1.0E-24 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_03985 ce34153f337c2a7687f5758d6d993b53 608 SMART SM00382 32 197 3.2E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_03985 ce34153f337c2a7687f5758d6d993b53 608 SMART SM00382 315 486 7.4E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_03985 ce34153f337c2a7687f5758d6d993b53 608 Pfam PF00005 ABC transporter 307 441 1.1E-23 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_21575 98c69c9cf6835aa6d91f787c361d73d6 752 Gene3D G3DSA:1.20.120.160 2 140 2.8E-19 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMK58_21575 98c69c9cf6835aa6d91f787c361d73d6 752 SMART SM00260 470 611 7.5E-8 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMK58_21575 98c69c9cf6835aa6d91f787c361d73d6 752 Gene3D G3DSA:3.30.565.10 289 477 1.3E-46 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_21575 98c69c9cf6835aa6d91f787c361d73d6 752 Pfam PF01584 CheW-like domain 483 610 8.0E-12 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMK58_21575 98c69c9cf6835aa6d91f787c361d73d6 752 PRINTS PR00344 Bacterial sensor protein C-terminal signature 462 475 3.0E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_21575 98c69c9cf6835aa6d91f787c361d73d6 752 PRINTS PR00344 Bacterial sensor protein C-terminal signature 438 456 3.0E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_21575 98c69c9cf6835aa6d91f787c361d73d6 752 PRINTS PR00344 Bacterial sensor protein C-terminal signature 380 394 3.0E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_21575 98c69c9cf6835aa6d91f787c361d73d6 752 PRINTS PR00344 Bacterial sensor protein C-terminal signature 422 432 3.0E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_21575 98c69c9cf6835aa6d91f787c361d73d6 752 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 339 477 1.1E-14 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_21575 98c69c9cf6835aa6d91f787c361d73d6 752 SUPERFAMILY SSF47226 6 123 4.19E-20 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMK58_21575 98c69c9cf6835aa6d91f787c361d73d6 752 Gene3D G3DSA:2.30.30.40 484 606 7.6E-17 T 11-10-2018 AMK58_21575 98c69c9cf6835aa6d91f787c361d73d6 752 Gene3D G3DSA:2.40.50.180 501 566 7.6E-17 T 11-10-2018 AMK58_21575 98c69c9cf6835aa6d91f787c361d73d6 752 Pfam PF01627 Hpt domain 8 99 1.3E-10 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMK58_21575 98c69c9cf6835aa6d91f787c361d73d6 752 SMART SM00387 335 478 4.9E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_21575 98c69c9cf6835aa6d91f787c361d73d6 752 SUPERFAMILY SSF52172 630 752 1.32E-33 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_21575 98c69c9cf6835aa6d91f787c361d73d6 752 SUPERFAMILY SSF50341 481 610 2.22E-17 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 AMK58_21575 98c69c9cf6835aa6d91f787c361d73d6 752 SUPERFAMILY SSF55874 295 476 5.61E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_21575 98c69c9cf6835aa6d91f787c361d73d6 752 SMART SM00073 5 102 1.2E-9 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMK58_21575 98c69c9cf6835aa6d91f787c361d73d6 752 SMART SM00448 633 748 4.4E-33 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_21575 98c69c9cf6835aa6d91f787c361d73d6 752 Pfam PF00072 Response regulator receiver domain 635 747 7.3E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_21575 98c69c9cf6835aa6d91f787c361d73d6 752 Gene3D G3DSA:3.40.50.12740 632 752 1.7E-37 T 11-10-2018 AMK58_07780 5d67f062c23ca0b64037be2be2c4fabf 372 SUPERFAMILY SSF52540 23 246 1.82E-44 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_07780 5d67f062c23ca0b64037be2be2c4fabf 372 Gene3D G3DSA:3.40.50.300 24 207 3.4E-44 T 11-10-2018 AMK58_07780 5d67f062c23ca0b64037be2be2c4fabf 372 Pfam PF13177 DNA polymerase III, delta subunit 27 207 8.5E-32 T 11-10-2018 AMK58_16780 43b1f96e7a26ff75bd23caca79075453 122 Gene3D G3DSA:2.60.300.12 16 122 3.5E-36 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 AMK58_16780 43b1f96e7a26ff75bd23caca79075453 122 Pfam PF01521 Iron-sulphur cluster biosynthesis 17 118 1.9E-19 T 11-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AMK58_16780 43b1f96e7a26ff75bd23caca79075453 122 SUPERFAMILY SSF89360 17 111 2.94E-30 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 AMK58_16780 43b1f96e7a26ff75bd23caca79075453 122 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 103 120 - T 11-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 AMK58_16780 43b1f96e7a26ff75bd23caca79075453 122 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 18 121 7.9E-38 T 11-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 AMK58_14060 b68aae0cfd41b277af618ef896aa97bb 411 SUPERFAMILY SSF52540 3 259 9.16E-79 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_14060 b68aae0cfd41b277af618ef896aa97bb 411 SMART SM00382 27 228 7.6E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_14060 b68aae0cfd41b277af618ef896aa97bb 411 Pfam PF00005 ABC transporter 19 178 1.8E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_14060 b68aae0cfd41b277af618ef896aa97bb 411 SUPERFAMILY SSF50331 253 389 8.75E-17 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMK58_14060 b68aae0cfd41b277af618ef896aa97bb 411 Gene3D G3DSA:2.40.50.940 240 383 1.5E-22 T 11-10-2018 AMK58_14060 b68aae0cfd41b277af618ef896aa97bb 411 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_14060 b68aae0cfd41b277af618ef896aa97bb 411 Gene3D G3DSA:2.40.50.140 306 374 1.5E-22 T 11-10-2018 AMK58_14060 b68aae0cfd41b277af618ef896aa97bb 411 Gene3D G3DSA:3.40.50.300 1 239 2.4E-58 T 11-10-2018 AMK58_15260 155f0cce9e7873c06415ceca197f98cf 209 Pfam PF13751 Transposase DDE domain 157 202 1.2E-7 T 11-10-2018 IPR025668 Transposase DDE domain AMK58_15260 155f0cce9e7873c06415ceca197f98cf 209 Pfam PF05598 Transposase domain (DUF772) 53 125 9.5E-23 T 11-10-2018 IPR008490 Transposase InsH, N-terminal AMK58_03370 53bfef73c0c9a2f4b6b920725ed4d72e 1083 SUPERFAMILY SSF56059 128 400 1.24E-104 T 11-10-2018 AMK58_03370 53bfef73c0c9a2f4b6b920725ed4d72e 1083 SUPERFAMILY SSF52440 1 127 3.6E-46 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMK58_03370 53bfef73c0c9a2f4b6b920725ed4d72e 1083 Gene3D G3DSA:3.40.50.1380 945 1080 5.2E-39 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily AMK58_03370 53bfef73c0c9a2f4b6b920725ed4d72e 1083 Gene3D G3DSA:3.40.50.20 1 116 3.1E-47 T 11-10-2018 AMK58_03370 53bfef73c0c9a2f4b6b920725ed4d72e 1083 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1078 13.361 T 11-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMK58_03370 53bfef73c0c9a2f4b6b920725ed4d72e 1083 Gene3D G3DSA:3.40.50.20 559 671 2.7E-46 T 11-10-2018 AMK58_03370 53bfef73c0c9a2f4b6b920725ed4d72e 1083 Gene3D G3DSA:3.30.470.20 120 402 2.2E-123 T 11-10-2018 AMK58_03370 53bfef73c0c9a2f4b6b920725ed4d72e 1083 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1061 0.0 T 11-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMK58_03370 53bfef73c0c9a2f4b6b920725ed4d72e 1083 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 848 855 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMK58_03370 53bfef73c0c9a2f4b6b920725ed4d72e 1083 Pfam PF02142 MGS-like domain 966 1050 2.0E-18 T 11-10-2018 IPR011607 Methylglyoxal synthase-like domain AMK58_03370 53bfef73c0c9a2f4b6b920725ed4d72e 1083 SUPERFAMILY SSF52335 944 1079 3.66E-40 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily AMK58_03370 53bfef73c0c9a2f4b6b920725ed4d72e 1083 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1070 13.035 T 11-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMK58_03370 53bfef73c0c9a2f4b6b920725ed4d72e 1083 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 297 304 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMK58_03370 53bfef73c0c9a2f4b6b920725ed4d72e 1083 SUPERFAMILY SSF52440 561 684 7.77E-46 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMK58_03370 53bfef73c0c9a2f4b6b920725ed4d72e 1083 SUPERFAMILY SSF48108 395 549 1.57E-47 T 11-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMK58_03370 53bfef73c0c9a2f4b6b920725ed4d72e 1083 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 427 546 1.4E-40 T 11-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMK58_03370 53bfef73c0c9a2f4b6b920725ed4d72e 1083 SMART SM00851 964 1050 3.6E-30 T 11-10-2018 IPR011607 Methylglyoxal synthase-like domain AMK58_03370 53bfef73c0c9a2f4b6b920725ed4d72e 1083 SUPERFAMILY SSF56059 682 942 7.6E-101 T 11-10-2018 AMK58_03370 53bfef73c0c9a2f4b6b920725ed4d72e 1083 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 718 732 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMK58_03370 53bfef73c0c9a2f4b6b920725ed4d72e 1083 Gene3D G3DSA:1.10.1030.10 403 551 2.9E-43 T 11-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMK58_03370 53bfef73c0c9a2f4b6b920725ed4d72e 1083 SMART SM01096 424 546 3.3E-69 T 11-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMK58_03370 53bfef73c0c9a2f4b6b920725ed4d72e 1083 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 334 1.5E-67 T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMK58_03370 53bfef73c0c9a2f4b6b920725ed4d72e 1083 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 682 884 3.0E-37 T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMK58_03370 53bfef73c0c9a2f4b6b920725ed4d72e 1083 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 379 397 3.8E-63 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMK58_03370 53bfef73c0c9a2f4b6b920725ed4d72e 1083 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 3.8E-63 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMK58_03370 53bfef73c0c9a2f4b6b920725ed4d72e 1083 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 3.8E-63 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMK58_03370 53bfef73c0c9a2f4b6b920725ed4d72e 1083 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 297 326 3.8E-63 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMK58_03370 53bfef73c0c9a2f4b6b920725ed4d72e 1083 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 3.8E-63 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMK58_03370 53bfef73c0c9a2f4b6b920725ed4d72e 1083 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 3.8E-63 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMK58_03370 53bfef73c0c9a2f4b6b920725ed4d72e 1083 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 3.8E-63 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMK58_03370 53bfef73c0c9a2f4b6b920725ed4d72e 1083 Gene3D G3DSA:3.30.470.20 674 944 6.5E-112 T 11-10-2018 AMK58_02415 3e4155980470100d301cf52cfaf910de 103 Gene3D G3DSA:3.30.750.24 2 102 1.5E-10 T 11-10-2018 IPR036513 STAS domain superfamily AMK58_02415 3e4155980470100d301cf52cfaf910de 103 Pfam PF13466 STAS domain 16 94 4.7E-9 T 11-10-2018 IPR002645 STAS domain AMK58_02415 3e4155980470100d301cf52cfaf910de 103 SUPERFAMILY SSF52091 7 98 5.1E-9 T 11-10-2018 IPR036513 STAS domain superfamily AMK58_14475 c616760166f4c6a66101ca612244b43b 408 Pfam PF00534 Glycosyl transferases group 1 187 333 9.7E-12 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 AMK58_14475 c616760166f4c6a66101ca612244b43b 408 Gene3D G3DSA:3.40.50.2000 184 407 7.6E-30 T 11-10-2018 AMK58_14475 c616760166f4c6a66101ca612244b43b 408 SUPERFAMILY SSF53756 121 405 1.83E-30 T 11-10-2018 AMK58_09760 b43e019ab00bf2c84393692fbc1a6689 743 Pfam PF01751 Toprim domain 3 120 7.4E-17 T 11-10-2018 IPR006171 TOPRIM domain AMK58_09760 b43e019ab00bf2c84393692fbc1a6689 743 SMART SM00436 114 209 1.9E-16 T 11-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 AMK58_09760 b43e019ab00bf2c84393692fbc1a6689 743 SMART SM00493 2 114 1.8E-15 T 11-10-2018 IPR006171 TOPRIM domain AMK58_09760 b43e019ab00bf2c84393692fbc1a6689 743 Gene3D G3DSA:2.70.20.10 203 484 1.7E-122 T 11-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 AMK58_09760 b43e019ab00bf2c84393692fbc1a6689 743 Pfam PF01131 DNA topoisomerase 143 592 7.6E-92 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMK58_09760 b43e019ab00bf2c84393692fbc1a6689 743 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 88 101 3.2E-22 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMK58_09760 b43e019ab00bf2c84393692fbc1a6689 743 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 301 310 3.2E-22 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMK58_09760 b43e019ab00bf2c84393692fbc1a6689 743 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 517 531 3.2E-22 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMK58_09760 b43e019ab00bf2c84393692fbc1a6689 743 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 390 406 3.2E-22 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMK58_09760 b43e019ab00bf2c84393692fbc1a6689 743 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 179 197 3.2E-22 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMK58_09760 b43e019ab00bf2c84393692fbc1a6689 743 Gene3D G3DSA:1.10.290.10 265 404 1.7E-122 T 11-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 AMK58_09760 b43e019ab00bf2c84393692fbc1a6689 743 Gene3D G3DSA:1.10.460.10 148 598 1.7E-122 T 11-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 AMK58_09760 b43e019ab00bf2c84393692fbc1a6689 743 SMART SM00437 256 554 9.5E-54 T 11-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 AMK58_09760 b43e019ab00bf2c84393692fbc1a6689 743 Gene3D G3DSA:3.40.50.140 2 141 9.4E-28 T 11-10-2018 AMK58_09760 b43e019ab00bf2c84393692fbc1a6689 743 SUPERFAMILY SSF56712 3 603 7.32E-136 T 11-10-2018 IPR023405 DNA topoisomerase, type IA, core domain AMK58_07090 8430c873171dee74d0162e027fc5311d 212 Hamap MF_01389 Urease accessory protein UreG [ureG]. 11 209 47.665 T 11-10-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 AMK58_07090 8430c873171dee74d0162e027fc5311d 212 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 15 185 1.9E-37 T 11-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain AMK58_07090 8430c873171dee74d0162e027fc5311d 212 Gene3D G3DSA:3.40.50.300 13 206 6.5E-50 T 11-10-2018 AMK58_07090 8430c873171dee74d0162e027fc5311d 212 PIRSF PIRSF005624 6 207 8.1E-49 T 11-10-2018 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0016151 AMK58_07090 8430c873171dee74d0162e027fc5311d 212 TIGRFAM TIGR00101 ureG: urease accessory protein UreG 13 204 1.3E-104 T 11-10-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 AMK58_07090 8430c873171dee74d0162e027fc5311d 212 SUPERFAMILY SSF52540 4 203 1.43E-38 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_02435 f9f9c41b8e87146136e437e86455f682 138 SUPERFAMILY SSF52172 2 121 3.56E-41 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_02435 f9f9c41b8e87146136e437e86455f682 138 Gene3D G3DSA:3.40.50.12740 1 137 6.6E-46 T 11-10-2018 AMK58_02435 f9f9c41b8e87146136e437e86455f682 138 SMART SM00448 3 116 1.6E-42 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_02435 f9f9c41b8e87146136e437e86455f682 138 Pfam PF00072 Response regulator receiver domain 5 116 4.6E-31 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_23515 5a4ee6375b0e4d26a86a44152c9152d7 235 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 102 194 3.9E-10 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMK58_23515 5a4ee6375b0e4d26a86a44152c9152d7 235 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 17 227 1.2E-66 T 11-10-2018 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic GO:0016791 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 AMK58_23515 5a4ee6375b0e4d26a86a44152c9152d7 235 Pfam PF13419 Haloacid dehalogenase-like hydrolase 17 199 1.8E-35 T 11-10-2018 AMK58_23515 5a4ee6375b0e4d26a86a44152c9152d7 235 Gene3D G3DSA:3.40.50.1000 17 221 3.4E-56 T 11-10-2018 IPR023214 HAD superfamily AMK58_23515 5a4ee6375b0e4d26a86a44152c9152d7 235 SUPERFAMILY SSF56784 12 229 1.55E-53 T 11-10-2018 IPR036412 HAD-like superfamily AMK58_23515 5a4ee6375b0e4d26a86a44152c9152d7 235 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 94 200 1.9E-11 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMK58_23515 5a4ee6375b0e4d26a86a44152c9152d7 235 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 14 25 1.5E-8 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMK58_23515 5a4ee6375b0e4d26a86a44152c9152d7 235 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 189 202 1.5E-8 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMK58_23515 5a4ee6375b0e4d26a86a44152c9152d7 235 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 113 126 1.5E-8 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMK58_23515 5a4ee6375b0e4d26a86a44152c9152d7 235 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 144 160 1.5E-8 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMK58_23515 5a4ee6375b0e4d26a86a44152c9152d7 235 Gene3D G3DSA:1.10.150.240 29 99 3.4E-56 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 AMK58_23515 5a4ee6375b0e4d26a86a44152c9152d7 235 Hamap MF_00495 Phosphoglycolate phosphatase [gph]. 14 230 34.556 T 11-10-2018 IPR037512 Phosphoglycolate phosphatase, prokaryotic GO:0005975|GO:0008967 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 AMK58_23745 b59a51667ebd2afd6453c368703a0960 549 SMART SM00382 361 537 4.1E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_23745 b59a51667ebd2afd6453c368703a0960 549 Pfam PF00005 ABC transporter 355 488 3.7E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_23745 b59a51667ebd2afd6453c368703a0960 549 ProSitePatterns PS00211 ABC transporters family signature. 461 475 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_23745 b59a51667ebd2afd6453c368703a0960 549 Gene3D G3DSA:1.20.1560.10 12 308 1.7E-8 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMK58_23745 b59a51667ebd2afd6453c368703a0960 549 SUPERFAMILY SSF52540 331 542 3.78E-42 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_23745 b59a51667ebd2afd6453c368703a0960 549 SUPERFAMILY SSF90123 15 307 1.57E-15 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMK58_23745 b59a51667ebd2afd6453c368703a0960 549 Gene3D G3DSA:3.40.50.300 327 548 1.5E-38 T 11-10-2018 AMK58_16085 12f04542dd74f896bdece471eedf0f80 1010 SMART SM00982 869 968 1.7E-22 T 11-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 AMK58_16085 12f04542dd74f896bdece471eedf0f80 1010 SUPERFAMILY SSF52540 3 218 5.66E-41 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_16085 12f04542dd74f896bdece471eedf0f80 1010 Gene3D G3DSA:3.30.2060.10 45 130 1.9E-20 T 11-10-2018 AMK58_16085 12f04542dd74f896bdece471eedf0f80 1010 SUPERFAMILY SSF52540 523 794 2.17E-51 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_16085 12f04542dd74f896bdece471eedf0f80 1010 Pfam PF03461 TRCF domain 871 956 2.8E-21 T 11-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 AMK58_16085 12f04542dd74f896bdece471eedf0f80 1010 SMART SM01058 351 447 6.1E-15 T 11-10-2018 IPR003711 CarD-like/TRCF domain AMK58_16085 12f04542dd74f896bdece471eedf0f80 1010 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 6 966 22.474 T 11-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 AMK58_16085 12f04542dd74f896bdece471eedf0f80 1010 Pfam PF00270 DEAD/DEAH box helicase 477 632 3.4E-16 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMK58_16085 12f04542dd74f896bdece471eedf0f80 1010 Gene3D G3DSA:3.40.50.300 413 652 5.0E-179 T 11-10-2018 AMK58_16085 12f04542dd74f896bdece471eedf0f80 1010 Gene3D G3DSA:2.30.30.840 355 412 5.0E-179 T 11-10-2018 AMK58_16085 12f04542dd74f896bdece471eedf0f80 1010 Pfam PF02559 CarD-like/TRCF domain 353 445 3.8E-14 T 11-10-2018 IPR003711 CarD-like/TRCF domain AMK58_16085 12f04542dd74f896bdece471eedf0f80 1010 Gene3D G3DSA:3.40.50.300 351 858 5.0E-179 T 11-10-2018 AMK58_16085 12f04542dd74f896bdece471eedf0f80 1010 Gene3D G3DSA:3.90.1150.50 866 1005 1.5E-23 T 11-10-2018 IPR037235 TRCF-like, C-terminal domain AMK58_16085 12f04542dd74f896bdece471eedf0f80 1010 Pfam PF00271 Helicase conserved C-terminal domain 676 781 2.1E-15 T 11-10-2018 IPR001650 Helicase, C-terminal AMK58_16085 12f04542dd74f896bdece471eedf0f80 1010 SMART SM00487 471 661 1.1E-29 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMK58_16085 12f04542dd74f896bdece471eedf0f80 1010 SUPERFAMILY SSF143517 861 1004 1.11E-26 T 11-10-2018 IPR037235 TRCF-like, C-terminal domain AMK58_16085 12f04542dd74f896bdece471eedf0f80 1010 SUPERFAMILY SSF141259 349 414 3.53E-13 T 11-10-2018 IPR036101 CarD-like/TRCF domain superfamily AMK58_16085 12f04542dd74f896bdece471eedf0f80 1010 SMART SM00490 697 781 1.6E-16 T 11-10-2018 IPR001650 Helicase, C-terminal AMK58_17465 f8b95ea4dd177ee86342997bffac6524 294 Gene3D G3DSA:3.90.320.10 3 168 5.9E-19 T 11-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal AMK58_17465 f8b95ea4dd177ee86342997bffac6524 294 Pfam PF09588 YqaJ-like viral recombinase domain 4 121 1.7E-7 T 11-10-2018 IPR019080 YqaJ viral recombinase AMK58_17465 f8b95ea4dd177ee86342997bffac6524 294 SUPERFAMILY SSF52980 8 163 3.7E-14 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AMK58_16155 881ce8b386e3f0edb982285a099b98a7 318 Pfam PF03466 LysR substrate binding domain 110 310 4.2E-39 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_16155 881ce8b386e3f0edb982285a099b98a7 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 50 60 9.8E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_16155 881ce8b386e3f0edb982285a099b98a7 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 9.8E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_16155 881ce8b386e3f0edb982285a099b98a7 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 60 71 9.8E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_16155 881ce8b386e3f0edb982285a099b98a7 318 Gene3D G3DSA:1.10.10.10 21 115 7.1E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_16155 881ce8b386e3f0edb982285a099b98a7 318 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 25 82 6.1E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_16155 881ce8b386e3f0edb982285a099b98a7 318 SUPERFAMILY SSF53850 112 311 8.53E-39 T 11-10-2018 AMK58_16155 881ce8b386e3f0edb982285a099b98a7 318 SUPERFAMILY SSF46785 21 101 8.16E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_16155 881ce8b386e3f0edb982285a099b98a7 318 Gene3D G3DSA:3.40.190.290 116 314 4.7E-38 T 11-10-2018 AMK58_08725 b26c91e14cc23a69fd6e3e4d8f649d41 200 SMART SM00448 4 115 2.1E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_08725 b26c91e14cc23a69fd6e3e4d8f649d41 200 SMART SM00421 139 196 9.5E-22 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_08725 b26c91e14cc23a69fd6e3e4d8f649d41 200 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 172 184 3.1E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_08725 b26c91e14cc23a69fd6e3e4d8f649d41 200 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 142 156 3.1E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_08725 b26c91e14cc23a69fd6e3e4d8f649d41 200 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 172 3.1E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_08725 b26c91e14cc23a69fd6e3e4d8f649d41 200 Gene3D G3DSA:1.10.10.10 134 197 5.4E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_08725 b26c91e14cc23a69fd6e3e4d8f649d41 200 ProSitePatterns PS00622 LuxR-type HTH domain signature. 156 183 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_08725 b26c91e14cc23a69fd6e3e4d8f649d41 200 SUPERFAMILY SSF46894 132 196 6.12E-19 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMK58_08725 b26c91e14cc23a69fd6e3e4d8f649d41 200 Pfam PF00072 Response regulator receiver domain 7 115 1.0E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_08725 b26c91e14cc23a69fd6e3e4d8f649d41 200 Gene3D G3DSA:3.40.50.2300 1 130 1.5E-43 T 11-10-2018 AMK58_08725 b26c91e14cc23a69fd6e3e4d8f649d41 200 SUPERFAMILY SSF52172 5 147 1.57E-27 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_08725 b26c91e14cc23a69fd6e3e4d8f649d41 200 Pfam PF00196 Bacterial regulatory proteins, luxR family 141 196 2.8E-21 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_09285 efca6a3f6cc71c35166ba2f1811252cc 360 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 76 92 1.0E-30 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMK58_09285 efca6a3f6cc71c35166ba2f1811252cc 360 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 153 165 1.0E-30 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMK58_09285 efca6a3f6cc71c35166ba2f1811252cc 360 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 98 114 1.0E-30 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMK58_09285 efca6a3f6cc71c35166ba2f1811252cc 360 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 19 32 1.0E-30 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMK58_09285 efca6a3f6cc71c35166ba2f1811252cc 360 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 122 141 1.0E-30 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMK58_09285 efca6a3f6cc71c35166ba2f1811252cc 360 Pfam PF04480 Protein of unknown function (DUF559) 236 339 5.8E-37 T 11-10-2018 IPR007569 Protein of unknown function DUF559 AMK58_09285 efca6a3f6cc71c35166ba2f1811252cc 360 SUPERFAMILY SSF52980 235 341 2.25E-21 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AMK58_09285 efca6a3f6cc71c35166ba2f1811252cc 360 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 19 165 3.9E-43 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMK58_09285 efca6a3f6cc71c35166ba2f1811252cc 360 Gene3D G3DSA:3.40.960.10 244 343 1.3E-31 T 11-10-2018 AMK58_09285 efca6a3f6cc71c35166ba2f1811252cc 360 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 18 168 1.4E-42 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMK58_09285 efca6a3f6cc71c35166ba2f1811252cc 360 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 16 168 45.689 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMK58_09285 efca6a3f6cc71c35166ba2f1811252cc 360 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 128 162 - T 11-10-2018 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 AMK58_09285 efca6a3f6cc71c35166ba2f1811252cc 360 SUPERFAMILY SSF53098 17 170 8.91E-49 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMK58_09285 efca6a3f6cc71c35166ba2f1811252cc 360 Gene3D G3DSA:3.30.420.10 18 172 6.4E-45 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMK58_25210 b374969a38118f09fb9afa69d0a79641 513 SUPERFAMILY SSF51905 3 500 5.4E-64 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_25210 b374969a38118f09fb9afa69d0a79641 513 TIGRFAM TIGR02734 crtI_fam: phytoene desaturase 6 503 2.4E-122 T 11-10-2018 IPR014105 Carotenoid/retinoid oxidoreductase GO:0016117|GO:0055114 AMK58_25210 b374969a38118f09fb9afa69d0a79641 513 Gene3D G3DSA:3.50.50.60 2 112 7.4E-20 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_25210 b374969a38118f09fb9afa69d0a79641 513 Gene3D G3DSA:3.50.50.60 214 323 7.3E-22 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_25210 b374969a38118f09fb9afa69d0a79641 513 Pfam PF01593 Flavin containing amine oxidoreductase 12 285 1.8E-19 T 11-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 AMK58_03085 6b82b94e92373b8952f00fdd9c4e90fb 325 Pfam PF16344 Domain of unknown function (DUF4974) 224 309 2.2E-8 T 11-10-2018 IPR032508 Protein FecR, C-terminal AMK58_03085 6b82b94e92373b8952f00fdd9c4e90fb 325 Gene3D G3DSA:2.60.120.1440 104 241 1.0E-26 T 11-10-2018 AMK58_03085 6b82b94e92373b8952f00fdd9c4e90fb 325 Pfam PF04773 FecR protein 115 205 1.6E-22 T 11-10-2018 IPR006860 FecR protein AMK58_03085 6b82b94e92373b8952f00fdd9c4e90fb 325 PIRSF PIRSF018266 2 325 3.8E-83 T 11-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component AMK58_03085 6b82b94e92373b8952f00fdd9c4e90fb 325 Gene3D G3DSA:3.55.50.30 251 324 1.2E-6 T 11-10-2018 AMK58_03085 6b82b94e92373b8952f00fdd9c4e90fb 325 Pfam PF16220 Domain of unknown function (DUF4880) 13 54 1.8E-11 T 11-10-2018 IPR032623 FecR, N-terminal AMK58_03835 a9bf0e03b18d216d56cd51c44f47e6f7 121 Gene3D G3DSA:3.40.50.2300 1 119 3.8E-37 T 11-10-2018 AMK58_03835 a9bf0e03b18d216d56cd51c44f47e6f7 121 SMART SM00448 1 115 1.1E-36 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_03835 a9bf0e03b18d216d56cd51c44f47e6f7 121 SUPERFAMILY SSF52172 1 120 1.99E-36 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_03835 a9bf0e03b18d216d56cd51c44f47e6f7 121 Pfam PF00072 Response regulator receiver domain 3 116 6.2E-30 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_07395 a684240909d2c3847622bced94fa6c11 79 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 41 76 2.0E-13 T 11-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 AMK58_07395 a684240909d2c3847622bced94fa6c11 79 SUPERFAMILY SSF47336 2 75 1.31E-22 T 11-10-2018 IPR036736 ACP-like superfamily AMK58_07395 a684240909d2c3847622bced94fa6c11 79 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 22.422 T 11-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 AMK58_07395 a684240909d2c3847622bced94fa6c11 79 Gene3D G3DSA:1.10.1200.10 1 79 2.9E-29 T 11-10-2018 IPR036736 ACP-like superfamily AMK58_07395 a684240909d2c3847622bced94fa6c11 79 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 1 76 5.9E-33 T 11-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 AMK58_07395 a684240909d2c3847622bced94fa6c11 79 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 11-10-2018 IPR006162 Phosphopantetheine attachment site AMK58_07395 a684240909d2c3847622bced94fa6c11 79 Pfam PF00550 Phosphopantetheine attachment site 6 73 3.9E-13 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain AMK58_21395 efdbe4c96ae980783d1f17d3d00c7471 821 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 568 632 9.4E-15 T 11-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMK58_21395 efdbe4c96ae980783d1f17d3d00c7471 821 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 14 803 1.7E-291 T 11-10-2018 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 AMK58_21395 efdbe4c96ae980783d1f17d3d00c7471 821 Pfam PF04324 BFD-like [2Fe-2S] binding domain 429 477 5.7E-13 T 11-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain AMK58_21395 efdbe4c96ae980783d1f17d3d00c7471 821 Pfam PF04324 BFD-like [2Fe-2S] binding domain 493 542 4.7E-13 T 11-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain AMK58_21395 efdbe4c96ae980783d1f17d3d00c7471 821 SUPERFAMILY SSF51905 155 312 2.19E-26 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_21395 efdbe4c96ae980783d1f17d3d00c7471 821 Gene3D G3DSA:3.30.390.30 324 383 1.6E-8 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMK58_21395 efdbe4c96ae980783d1f17d3d00c7471 821 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 688 704 - T 11-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMK58_21395 efdbe4c96ae980783d1f17d3d00c7471 821 SUPERFAMILY SSF51905 9 200 2.3E-44 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_21395 efdbe4c96ae980783d1f17d3d00c7471 821 SUPERFAMILY SSF56014 643 810 1.83E-51 T 11-10-2018 AMK58_21395 efdbe4c96ae980783d1f17d3d00c7471 821 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 13 289 9.2E-53 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMK58_21395 efdbe4c96ae980783d1f17d3d00c7471 821 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 241 255 1.1E-9 T 11-10-2018 AMK58_21395 efdbe4c96ae980783d1f17d3d00c7471 821 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 13 35 1.1E-9 T 11-10-2018 AMK58_21395 efdbe4c96ae980783d1f17d3d00c7471 821 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 280 287 1.1E-9 T 11-10-2018 AMK58_21395 efdbe4c96ae980783d1f17d3d00c7471 821 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 155 180 1.1E-9 T 11-10-2018 AMK58_21395 efdbe4c96ae980783d1f17d3d00c7471 821 Gene3D G3DSA:3.50.50.60 15 288 8.2E-91 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_21395 efdbe4c96ae980783d1f17d3d00c7471 821 Gene3D G3DSA:3.50.50.60 118 252 8.2E-91 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_21395 efdbe4c96ae980783d1f17d3d00c7471 821 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 642 775 2.5E-25 T 11-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMK58_21395 efdbe4c96ae980783d1f17d3d00c7471 821 PIRSF PIRSF037149 6 820 0.0 T 11-10-2018 IPR017121 Nitrite reductase [NAD(P)H], large subunit GO:0042128 AMK58_21395 efdbe4c96ae980783d1f17d3d00c7471 821 PRINTS PR00397 Sirohaem Fe-binding site signature 645 663 1.4E-6 T 11-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMK58_21395 efdbe4c96ae980783d1f17d3d00c7471 821 PRINTS PR00397 Sirohaem Fe-binding site signature 688 706 1.4E-6 T 11-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMK58_21395 efdbe4c96ae980783d1f17d3d00c7471 821 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 155 173 3.0E-18 T 11-10-2018 AMK58_21395 efdbe4c96ae980783d1f17d3d00c7471 821 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 110 128 3.0E-18 T 11-10-2018 AMK58_21395 efdbe4c96ae980783d1f17d3d00c7471 821 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 14 33 3.0E-18 T 11-10-2018 AMK58_21395 efdbe4c96ae980783d1f17d3d00c7471 821 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 265 287 3.0E-18 T 11-10-2018 AMK58_21395 efdbe4c96ae980783d1f17d3d00c7471 821 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 240 256 3.0E-18 T 11-10-2018 AMK58_21395 efdbe4c96ae980783d1f17d3d00c7471 821 SUPERFAMILY SSF55124 527 650 8.67E-27 T 11-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMK58_21395 efdbe4c96ae980783d1f17d3d00c7471 821 Gene3D G3DSA:3.30.413.10 641 803 6.5E-34 T 11-10-2018 AMK58_21395 efdbe4c96ae980783d1f17d3d00c7471 821 Gene3D G3DSA:1.10.10.1100 428 482 4.1E-9 T 11-10-2018 AMK58_23480 8af787422a906f10d9b82761ce74dd08 318 Gene3D G3DSA:1.10.3720.10 85 307 4.3E-20 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_23480 8af787422a906f10d9b82761ce74dd08 318 SUPERFAMILY SSF161098 89 291 9.42E-19 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_23480 8af787422a906f10d9b82761ce74dd08 318 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 312 4.6E-41 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_08780 1a201d90addf65aa275f46ea2606332b 170 Pfam PF00805 Pentapeptide repeats (8 copies) 112 151 8.2E-13 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_08780 1a201d90addf65aa275f46ea2606332b 170 Pfam PF00805 Pentapeptide repeats (8 copies) 40 75 1.3E-5 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_08780 1a201d90addf65aa275f46ea2606332b 170 Gene3D G3DSA:2.160.20.100 27 165 8.8E-35 T 11-10-2018 AMK58_08780 1a201d90addf65aa275f46ea2606332b 170 SUPERFAMILY SSF141571 37 155 1.31E-34 T 11-10-2018 AMK58_03165 b367763db229b59069d6c027901ef0c2 262 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 103 123 - T 11-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 AMK58_03165 b367763db229b59069d6c027901ef0c2 262 Gene3D G3DSA:1.10.12.10 206 260 9.2E-14 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal AMK58_03165 b367763db229b59069d6c027901ef0c2 262 Gene3D G3DSA:3.90.226.10 2 202 3.7E-59 T 11-10-2018 AMK58_03165 b367763db229b59069d6c027901ef0c2 262 SUPERFAMILY SSF52096 3 261 4.53E-69 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMK58_03165 b367763db229b59069d6c027901ef0c2 262 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 260 2.2E-44 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMK58_24845 656e1a58d27448c1f4c123dbcb111393 393 Pfam PF01168 Alanine racemase, N-terminal domain 18 243 2.9E-45 T 11-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMK58_24845 656e1a58d27448c1f4c123dbcb111393 393 Gene3D G3DSA:2.40.37.10 15 382 3.6E-78 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AMK58_24845 656e1a58d27448c1f4c123dbcb111393 393 SUPERFAMILY SSF51419 18 257 1.01E-41 T 11-10-2018 IPR029066 PLP-binding barrel AMK58_24845 656e1a58d27448c1f4c123dbcb111393 393 TIGRFAM TIGR00492 alr: alanine racemase 14 365 1.5E-53 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMK58_24845 656e1a58d27448c1f4c123dbcb111393 393 Hamap MF_01201 Alanine racemase. 11 383 21.075 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMK58_24845 656e1a58d27448c1f4c123dbcb111393 393 SMART SM01005 256 383 2.2E-17 T 11-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMK58_24845 656e1a58d27448c1f4c123dbcb111393 393 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 42 52 - T 11-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMK58_24845 656e1a58d27448c1f4c123dbcb111393 393 PRINTS PR00992 Alanine racemase signature 289 304 6.6E-21 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMK58_24845 656e1a58d27448c1f4c123dbcb111393 393 PRINTS PR00992 Alanine racemase signature 73 91 6.6E-21 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMK58_24845 656e1a58d27448c1f4c123dbcb111393 393 PRINTS PR00992 Alanine racemase signature 310 327 6.6E-21 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMK58_24845 656e1a58d27448c1f4c123dbcb111393 393 PRINTS PR00992 Alanine racemase signature 168 179 6.6E-21 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMK58_24845 656e1a58d27448c1f4c123dbcb111393 393 PRINTS PR00992 Alanine racemase signature 37 53 6.6E-21 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMK58_24845 656e1a58d27448c1f4c123dbcb111393 393 PRINTS PR00992 Alanine racemase signature 134 146 6.6E-21 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMK58_24845 656e1a58d27448c1f4c123dbcb111393 393 Pfam PF00842 Alanine racemase, C-terminal domain 256 382 2.1E-20 T 11-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMK58_24845 656e1a58d27448c1f4c123dbcb111393 393 SUPERFAMILY SSF50621 252 383 3.84E-25 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AMK58_24845 656e1a58d27448c1f4c123dbcb111393 393 Gene3D G3DSA:3.20.20.10 20 240 3.6E-78 T 11-10-2018 IPR029066 PLP-binding barrel AMK58_13795 9f4c4cea316753517601bbc9e0eef71a 318 SUPERFAMILY SSF56059 124 311 4.12E-56 T 11-10-2018 AMK58_13795 9f4c4cea316753517601bbc9e0eef71a 318 Gene3D G3DSA:3.40.50.20 9 114 9.9E-115 T 11-10-2018 AMK58_13795 9f4c4cea316753517601bbc9e0eef71a 318 Gene3D G3DSA:3.30.470.20 115 294 9.9E-115 T 11-10-2018 AMK58_13795 9f4c4cea316753517601bbc9e0eef71a 318 SUPERFAMILY SSF52440 3 122 6.91E-43 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMK58_13795 9f4c4cea316753517601bbc9e0eef71a 318 TIGRFAM TIGR01380 glut_syn: glutathione synthase 3 310 2.4E-125 T 11-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 AMK58_13795 9f4c4cea316753517601bbc9e0eef71a 318 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 124 296 2.7E-73 T 11-10-2018 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 AMK58_13795 9f4c4cea316753517601bbc9e0eef71a 318 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 3 120 3.2E-44 T 11-10-2018 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 AMK58_13795 9f4c4cea316753517601bbc9e0eef71a 318 Hamap MF_00162 Glutathione synthetase [gshB]. 1 316 156.709 T 11-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 AMK58_13795 9f4c4cea316753517601bbc9e0eef71a 318 Gene3D G3DSA:3.30.1490.20 137 201 9.9E-115 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMK58_06695 06e08c2c148dbff54a61018a607d0ea4 429 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 10 426 1.7E-129 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMK58_06695 06e08c2c148dbff54a61018a607d0ea4 429 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 9 426 6.8E-180 T 11-10-2018 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 AMK58_06695 06e08c2c148dbff54a61018a607d0ea4 429 PIRSF PIRSF001434 1 429 2.5E-118 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMK58_06695 06e08c2c148dbff54a61018a607d0ea4 429 SUPERFAMILY SSF53383 8 426 1.32E-118 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_06695 06e08c2c148dbff54a61018a607d0ea4 429 Gene3D G3DSA:3.40.640.10 8 291 2.8E-94 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_06695 06e08c2c148dbff54a61018a607d0ea4 429 Gene3D G3DSA:3.90.1150.10 295 429 1.8E-49 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_26335 44a186bf169f83612d4d4826aa5826e0 152 SUPERFAMILY SSF54292 2 77 5.77E-27 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMK58_26335 44a186bf169f83612d4d4826aa5826e0 152 Gene3D G3DSA:1.10.150.120 77 152 2.1E-24 T 11-10-2018 AMK58_26335 44a186bf169f83612d4d4826aa5826e0 152 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 38 46 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AMK58_26335 44a186bf169f83612d4d4826aa5826e0 152 Gene3D G3DSA:3.10.20.30 1 75 1.7E-28 T 11-10-2018 IPR012675 Beta-grasp domain superfamily AMK58_26335 44a186bf169f83612d4d4826aa5826e0 152 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 5 62 7.0E-8 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMK58_26335 44a186bf169f83612d4d4826aa5826e0 152 SUPERFAMILY SSF47741 72 150 8.77E-30 T 11-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily AMK58_26335 44a186bf169f83612d4d4826aa5826e0 152 Pfam PF01799 [2Fe-2S] binding domain 72 144 8.5E-25 T 11-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMK58_22675 f35f2d0f6ba837e9d99e37f89c893120 148 Pfam PF01152 Bacterial-like globin 25 110 2.9E-4 T 11-10-2018 IPR001486 Truncated hemoglobin GO:0019825 AMK58_22675 f35f2d0f6ba837e9d99e37f89c893120 148 Gene3D G3DSA:1.10.490.10 19 136 3.1E-39 T 11-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 AMK58_22675 f35f2d0f6ba837e9d99e37f89c893120 148 SUPERFAMILY SSF46458 23 131 3.84E-29 T 11-10-2018 IPR009050 Globin-like superfamily AMK58_11420 3de3e556046459af48a55813281285fe 217 Gene3D G3DSA:1.10.1670.40 4 191 5.5E-58 T 11-10-2018 AMK58_11420 3de3e556046459af48a55813281285fe 217 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 39 179 1.2E-15 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AMK58_11420 3de3e556046459af48a55813281285fe 217 SMART SM00478 41 193 4.7E-16 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AMK58_11420 3de3e556046459af48a55813281285fe 217 Gene3D G3DSA:1.10.340.30 29 140 5.5E-58 T 11-10-2018 AMK58_11420 3de3e556046459af48a55813281285fe 217 SUPERFAMILY SSF48150 24 192 1.33E-41 T 11-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 AMK58_23585 bb7bf1d46a17b25ccedb4e4cbefc2fea 376 SUPERFAMILY SSF55031 168 276 4.64E-18 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain AMK58_23585 bb7bf1d46a17b25ccedb4e4cbefc2fea 376 Pfam PF01546 Peptidase family M20/M25/M40 61 372 2.8E-33 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 AMK58_23585 bb7bf1d46a17b25ccedb4e4cbefc2fea 376 TIGRFAM TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE) 2 371 6.9E-128 T 11-10-2018 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 AMK58_23585 bb7bf1d46a17b25ccedb4e4cbefc2fea 376 SUPERFAMILY SSF53187 3 375 1.76E-55 T 11-10-2018 AMK58_23585 bb7bf1d46a17b25ccedb4e4cbefc2fea 376 Gene3D G3DSA:3.40.630.10 5 360 3.4E-98 T 11-10-2018 AMK58_23585 bb7bf1d46a17b25ccedb4e4cbefc2fea 376 Gene3D G3DSA:3.30.70.360 168 284 3.4E-98 T 11-10-2018 AMK58_23585 bb7bf1d46a17b25ccedb4e4cbefc2fea 376 Pfam PF07687 Peptidase dimerisation domain 165 273 1.1E-17 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain AMK58_23585 bb7bf1d46a17b25ccedb4e4cbefc2fea 376 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 94 131 - T 11-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 AMK58_16270 c59b2a308a001a70067616fdc84f556e 961 SUPERFAMILY SSF53706 95 490 3.8E-22 T 11-10-2018 AMK58_16270 c59b2a308a001a70067616fdc84f556e 961 SUPERFAMILY SSF50692 558 642 1.67E-5 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily AMK58_16270 c59b2a308a001a70067616fdc84f556e 961 Gene3D G3DSA:3.30.70.20 816 948 6.9E-26 T 11-10-2018 AMK58_16270 c59b2a308a001a70067616fdc84f556e 961 Gene3D G3DSA:3.30.70.20 721 815 3.8E-19 T 11-10-2018 AMK58_16270 c59b2a308a001a70067616fdc84f556e 961 Gene3D G3DSA:3.40.50.740 341 506 4.9E-8 T 11-10-2018 AMK58_16270 c59b2a308a001a70067616fdc84f556e 961 Pfam PF12838 4Fe-4S dicluster domain 732 803 4.3E-6 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMK58_16270 c59b2a308a001a70067616fdc84f556e 961 Pfam PF12838 4Fe-4S dicluster domain 818 906 2.7E-9 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMK58_16270 c59b2a308a001a70067616fdc84f556e 961 SUPERFAMILY SSF54862 723 953 2.09E-50 T 11-10-2018 AMK58_00910 6e3e90b862a7ef22583ada201056cf39 514 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 423 491 4.7E-31 T 11-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 AMK58_00910 6e3e90b862a7ef22583ada201056cf39 514 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 276 290 8.3E-50 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AMK58_00910 6e3e90b862a7ef22583ada201056cf39 514 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 212 232 8.3E-50 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AMK58_00910 6e3e90b862a7ef22583ada201056cf39 514 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 310 337 8.3E-50 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AMK58_00910 6e3e90b862a7ef22583ada201056cf39 514 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 244 258 8.3E-50 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AMK58_00910 6e3e90b862a7ef22583ada201056cf39 514 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 472 491 8.3E-50 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AMK58_00910 6e3e90b862a7ef22583ada201056cf39 514 SUPERFAMILY SSF52540 178 391 2.27E-42 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_00910 6e3e90b862a7ef22583ada201056cf39 514 Pfam PF00308 Bacterial dnaA protein 179 395 4.3E-91 T 11-10-2018 IPR013317 Chromosomal replication initiator protein DnaA AMK58_00910 6e3e90b862a7ef22583ada201056cf39 514 SUPERFAMILY SSF48295 409 513 3.14E-39 T 11-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMK58_00910 6e3e90b862a7ef22583ada201056cf39 514 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 11 512 2.7E-170 T 11-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 AMK58_00910 6e3e90b862a7ef22583ada201056cf39 514 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 8 513 32.516 T 11-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 AMK58_00910 6e3e90b862a7ef22583ada201056cf39 514 Gene3D G3DSA:3.30.300.180 9 109 6.2E-13 T 11-10-2018 IPR038454 DnaA, N-terminal domain superfamily AMK58_00910 6e3e90b862a7ef22583ada201056cf39 514 SMART SM00760 422 491 8.7E-42 T 11-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 AMK58_00910 6e3e90b862a7ef22583ada201056cf39 514 Gene3D G3DSA:3.40.50.300 164 343 9.7E-53 T 11-10-2018 AMK58_00910 6e3e90b862a7ef22583ada201056cf39 514 Gene3D G3DSA:1.10.8.60 345 414 3.8E-20 T 11-10-2018 AMK58_00910 6e3e90b862a7ef22583ada201056cf39 514 Pfam PF11638 DnaA N-terminal domain 9 70 3.2E-20 T 11-10-2018 IPR024633 DnaA N-terminal domain AMK58_00910 6e3e90b862a7ef22583ada201056cf39 514 Gene3D G3DSA:1.10.1750.10 415 513 2.4E-36 T 11-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMK58_00910 6e3e90b862a7ef22583ada201056cf39 514 ProSitePatterns PS01008 DnaA protein signature. 472 491 - T 11-10-2018 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 AMK58_00910 6e3e90b862a7ef22583ada201056cf39 514 SMART SM00382 211 339 1.8E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_05770 76d78bbaff772810cd1111d38a082a15 487 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 357 484 1.7E-29 T 11-10-2018 IPR032879 FixG, C-terminal immunoglobulin-like domain AMK58_05770 76d78bbaff772810cd1111d38a082a15 487 Pfam PF12801 4Fe-4S binding domain 91 130 3.0E-8 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMK58_05770 76d78bbaff772810cd1111d38a082a15 487 Gene3D G3DSA:2.60.40.10 360 484 1.2E-17 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_05770 76d78bbaff772810cd1111d38a082a15 487 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 30 481 1.5E-150 T 11-10-2018 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021|GO:0055114 AMK58_05770 76d78bbaff772810cd1111d38a082a15 487 SUPERFAMILY SSF54862 100 358 2.3E-27 T 11-10-2018 AMK58_05770 76d78bbaff772810cd1111d38a082a15 487 Pfam PF13746 4Fe-4S dicluster domain 214 321 7.2E-41 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMK58_05770 76d78bbaff772810cd1111d38a082a15 487 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 269 280 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMK58_05210 f8f6786ce124f433fcf692ce199124c6 275 PIRSF PIRSF000193 9 275 1.2E-56 T 11-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 AMK58_05210 f8f6786ce124f433fcf692ce199124c6 275 SUPERFAMILY SSF51735 11 165 2.86E-24 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_05210 f8f6786ce124f433fcf692ce199124c6 275 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 13 273 1.6E-72 T 11-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 AMK58_05210 f8f6786ce124f433fcf692ce199124c6 275 Gene3D G3DSA:3.40.50.720 6 169 4.1E-36 T 11-10-2018 AMK58_05210 f8f6786ce124f433fcf692ce199124c6 275 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 13 104 5.6E-7 T 11-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal AMK58_05210 f8f6786ce124f433fcf692ce199124c6 275 Gene3D G3DSA:1.10.3730.10 170 275 3.2E-37 T 11-10-2018 AMK58_05210 f8f6786ce124f433fcf692ce199124c6 275 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 168 273 8.0E-33 T 11-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 AMK58_05210 f8f6786ce124f433fcf692ce199124c6 275 SUPERFAMILY SSF48179 167 274 1.39E-30 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMK58_05210 f8f6786ce124f433fcf692ce199124c6 275 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 9 273 24.736 T 11-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 AMK58_16440 c6117835418da172eca59e6d04b22cff 325 SUPERFAMILY SSF46785 245 323 1.53E-13 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_16440 c6117835418da172eca59e6d04b22cff 325 Pfam PF00072 Response regulator receiver domain 35 140 8.2E-11 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_16440 c6117835418da172eca59e6d04b22cff 325 SMART SM00448 27 140 1.4E-4 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_16440 c6117835418da172eca59e6d04b22cff 325 SUPERFAMILY SSF52172 28 152 3.13E-17 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_16440 c6117835418da172eca59e6d04b22cff 325 SMART SM00347 233 324 0.0059 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_16440 c6117835418da172eca59e6d04b22cff 325 Gene3D G3DSA:3.40.50.2300 24 152 1.9E-14 T 11-10-2018 AMK58_16440 c6117835418da172eca59e6d04b22cff 325 Pfam PF13463 Winged helix DNA-binding domain 255 310 9.2E-8 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_16440 c6117835418da172eca59e6d04b22cff 325 Gene3D G3DSA:1.10.10.10 199 325 2.2E-15 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_10645 ec9a07b76d7eb1aebb55b1fac8bcf97b 915 Pfam PF03781 Sulfatase-modifying factor enzyme 1 686 912 1.6E-56 T 11-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 AMK58_10645 ec9a07b76d7eb1aebb55b1fac8bcf97b 915 SUPERFAMILY SSF52129 33 270 3.44E-45 T 11-10-2018 IPR029030 Caspase-like domain superfamily AMK58_10645 ec9a07b76d7eb1aebb55b1fac8bcf97b 915 Pfam PF08239 Bacterial SH3 domain 591 635 1.3E-7 T 11-10-2018 IPR003646 SH3-like domain, bacterial-type AMK58_10645 ec9a07b76d7eb1aebb55b1fac8bcf97b 915 Gene3D G3DSA:3.40.50.1460 32 272 6.5E-53 T 11-10-2018 AMK58_10645 ec9a07b76d7eb1aebb55b1fac8bcf97b 915 SMART SM00115 32 270 0.0091 T 11-10-2018 IPR015917 Peptidase C14A, caspase catalytic domain GO:0008234 AMK58_10645 ec9a07b76d7eb1aebb55b1fac8bcf97b 915 Gene3D G3DSA:2.30.30.40 576 646 2.2E-6 T 11-10-2018 AMK58_10645 ec9a07b76d7eb1aebb55b1fac8bcf97b 915 Gene3D G3DSA:3.90.1580.10 674 915 7.3E-59 T 11-10-2018 AMK58_10645 ec9a07b76d7eb1aebb55b1fac8bcf97b 915 SUPERFAMILY SSF56436 685 914 1.74E-62 T 11-10-2018 IPR016187 C-type lectin fold AMK58_10645 ec9a07b76d7eb1aebb55b1fac8bcf97b 915 Pfam PF00656 Caspase domain 41 268 5.7E-27 T 11-10-2018 AMK58_17040 2d5700121008d7722c776b3d8ab07ed1 244 Pfam PF00440 Bacterial regulatory proteins, tetR family 37 81 2.8E-9 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_17040 2d5700121008d7722c776b3d8ab07ed1 244 Gene3D G3DSA:1.10.357.10 27 208 1.4E-45 T 11-10-2018 AMK58_17040 2d5700121008d7722c776b3d8ab07ed1 244 SUPERFAMILY SSF46689 30 88 1.28E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_05050 933aeb4d1f487d95360545b3ab1f632f 435 Gene3D G3DSA:3.40.50.1970 13 201 1.7E-51 T 11-10-2018 AMK58_05050 933aeb4d1f487d95360545b3ab1f632f 435 Gene3D G3DSA:1.20.1090.10 203 432 4.5E-56 T 11-10-2018 AMK58_05050 933aeb4d1f487d95360545b3ab1f632f 435 Pfam PF00465 Iron-containing alcohol dehydrogenase 24 423 1.6E-100 T 11-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 AMK58_05050 933aeb4d1f487d95360545b3ab1f632f 435 SUPERFAMILY SSF56796 24 432 1.03E-95 T 11-10-2018 AMK58_05050 933aeb4d1f487d95360545b3ab1f632f 435 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 190 218 - T 11-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AMK58_16650 3e52ff2bc77009f666efb8e7a7162f43 416 Gene3D G3DSA:2.170.190.11 56 150 4.0E-127 T 11-10-2018 AMK58_16650 3e52ff2bc77009f666efb8e7a7162f43 416 Pfam PF03454 MoeA C-terminal region (domain IV) 341 411 1.0E-18 T 11-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMK58_16650 3e52ff2bc77009f666efb8e7a7162f43 416 SUPERFAMILY SSF63867 335 414 1.31E-21 T 11-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMK58_16650 3e52ff2bc77009f666efb8e7a7162f43 416 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 262 295 - T 11-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 AMK58_16650 3e52ff2bc77009f666efb8e7a7162f43 416 SUPERFAMILY SSF53218 186 329 1.22E-40 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily AMK58_16650 3e52ff2bc77009f666efb8e7a7162f43 416 Gene3D G3DSA:3.40.980.10 184 336 4.0E-127 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily AMK58_16650 3e52ff2bc77009f666efb8e7a7162f43 416 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 186 320 2.3E-28 T 11-10-2018 IPR001453 MoaB/Mog domain AMK58_16650 3e52ff2bc77009f666efb8e7a7162f43 416 SMART SM00852 189 326 4.4E-39 T 11-10-2018 IPR001453 MoaB/Mog domain AMK58_16650 3e52ff2bc77009f666efb8e7a7162f43 416 Pfam PF03453 MoeA N-terminal region (domain I and II) 13 176 2.9E-39 T 11-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMK58_16650 3e52ff2bc77009f666efb8e7a7162f43 416 SUPERFAMILY SSF63882 13 184 5.36E-49 T 11-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMK58_16650 3e52ff2bc77009f666efb8e7a7162f43 416 Gene3D G3DSA:2.40.340.10 337 406 4.0E-127 T 11-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMK58_16650 3e52ff2bc77009f666efb8e7a7162f43 416 Gene3D G3DSA:3.90.105.10 32 183 4.0E-127 T 11-10-2018 AMK58_16650 3e52ff2bc77009f666efb8e7a7162f43 416 Pfam PF00994 Probable molybdopterin binding domain 191 323 3.3E-25 T 11-10-2018 IPR001453 MoaB/Mog domain AMK58_20415 4e8fa14e2bcb4e4d4d62764dddb77284 363 Gene3D G3DSA:1.10.530.10 106 308 7.6E-45 T 11-10-2018 AMK58_20415 4e8fa14e2bcb4e4d4d62764dddb77284 363 SUPERFAMILY SSF53955 119 259 1.19E-9 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily AMK58_13705 99566d17654fbc42a275c0397b85e65d 841 Pfam PF02687 FtsX-like permease family 750 830 4.2E-8 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 AMK58_12835 625e347f61a33922d44d987a14d32665 465 Pfam PF00271 Helicase conserved C-terminal domain 236 333 2.6E-28 T 11-10-2018 IPR001650 Helicase, C-terminal AMK58_12835 625e347f61a33922d44d987a14d32665 465 SUPERFAMILY SSF52540 69 355 7.71E-73 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_12835 625e347f61a33922d44d987a14d32665 465 Pfam PF00270 DEAD/DEAH box helicase 20 187 2.5E-49 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMK58_12835 625e347f61a33922d44d987a14d32665 465 Gene3D G3DSA:3.40.50.300 207 370 7.4E-50 T 11-10-2018 AMK58_12835 625e347f61a33922d44d987a14d32665 465 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 147 155 - T 11-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site AMK58_12835 625e347f61a33922d44d987a14d32665 465 Gene3D G3DSA:3.40.50.300 1 205 1.1E-73 T 11-10-2018 AMK58_12835 625e347f61a33922d44d987a14d32665 465 SMART SM00490 252 333 3.8E-33 T 11-10-2018 IPR001650 Helicase, C-terminal AMK58_12835 625e347f61a33922d44d987a14d32665 465 SMART SM00487 15 215 1.5E-59 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMK58_02405 10cdbb71f9d4bde5ab372b3d03bd21f9 745 Gene3D G3DSA:2.30.30.40 583 712 6.1E-37 T 11-10-2018 AMK58_02405 10cdbb71f9d4bde5ab372b3d03bd21f9 745 SMART SM01231 334 397 1.4E-21 T 11-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 AMK58_02405 10cdbb71f9d4bde5ab372b3d03bd21f9 745 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 335 397 1.4E-16 T 11-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 AMK58_02405 10cdbb71f9d4bde5ab372b3d03bd21f9 745 Gene3D G3DSA:1.10.287.560 334 397 9.5E-17 T 11-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 AMK58_02405 10cdbb71f9d4bde5ab372b3d03bd21f9 745 SUPERFAMILY SSF47226 4 128 9.55E-28 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMK58_02405 10cdbb71f9d4bde5ab372b3d03bd21f9 745 SUPERFAMILY SSF47384 335 398 1.02E-14 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_02405 10cdbb71f9d4bde5ab372b3d03bd21f9 745 Gene3D G3DSA:2.40.50.180 606 671 6.1E-37 T 11-10-2018 AMK58_02405 10cdbb71f9d4bde5ab372b3d03bd21f9 745 SUPERFAMILY SSF50341 582 715 1.44E-29 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 AMK58_02405 10cdbb71f9d4bde5ab372b3d03bd21f9 745 SMART SM00387 442 583 5.0E-23 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_02405 10cdbb71f9d4bde5ab372b3d03bd21f9 745 Pfam PF01584 CheW-like domain 588 715 3.2E-25 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMK58_02405 10cdbb71f9d4bde5ab372b3d03bd21f9 745 Gene3D G3DSA:1.20.120.160 1 141 2.1E-34 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMK58_02405 10cdbb71f9d4bde5ab372b3d03bd21f9 745 PRINTS PR00344 Bacterial sensor protein C-terminal signature 527 537 3.2E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_02405 10cdbb71f9d4bde5ab372b3d03bd21f9 745 PRINTS PR00344 Bacterial sensor protein C-terminal signature 543 561 3.2E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_02405 10cdbb71f9d4bde5ab372b3d03bd21f9 745 PRINTS PR00344 Bacterial sensor protein C-terminal signature 487 501 3.2E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_02405 10cdbb71f9d4bde5ab372b3d03bd21f9 745 PRINTS PR00344 Bacterial sensor protein C-terminal signature 567 580 3.2E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_02405 10cdbb71f9d4bde5ab372b3d03bd21f9 745 Pfam PF01627 Hpt domain 8 100 1.1E-16 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMK58_02405 10cdbb71f9d4bde5ab372b3d03bd21f9 745 SMART SM00073 3 101 2.2E-26 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMK58_02405 10cdbb71f9d4bde5ab372b3d03bd21f9 745 SMART SM00260 575 716 1.1E-36 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMK58_02405 10cdbb71f9d4bde5ab372b3d03bd21f9 745 Gene3D G3DSA:3.30.565.10 398 582 7.9E-55 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_02405 10cdbb71f9d4bde5ab372b3d03bd21f9 745 SUPERFAMILY SSF55874 395 585 2.75E-37 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_02405 10cdbb71f9d4bde5ab372b3d03bd21f9 745 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 445 582 5.0E-16 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_15420 f870e85518eaf8d7f64044d16f4f4d92 582 SUPERFAMILY SSF56349 220 553 3.24E-35 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMK58_15420 f870e85518eaf8d7f64044d16f4f4d92 582 Gene3D G3DSA:1.10.150.130 214 355 9.3E-10 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal AMK58_15420 f870e85518eaf8d7f64044d16f4f4d92 582 Pfam PF00589 Phage integrase family 398 547 1.8E-8 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMK58_15420 f870e85518eaf8d7f64044d16f4f4d92 582 Gene3D G3DSA:1.10.443.10 381 557 2.7E-18 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMK58_05620 969773a4d2c3e31ff56a75670108c868 125 Gene3D G3DSA:3.30.750.24 18 116 7.8E-17 T 11-10-2018 IPR036513 STAS domain superfamily AMK58_05620 969773a4d2c3e31ff56a75670108c868 125 Pfam PF13466 STAS domain 27 104 5.7E-14 T 11-10-2018 IPR002645 STAS domain AMK58_05620 969773a4d2c3e31ff56a75670108c868 125 SUPERFAMILY SSF52091 26 110 8.44E-16 T 11-10-2018 IPR036513 STAS domain superfamily AMK58_17635 c676769491ab21c2ff168710a78d7af6 318 Pfam PF04055 Radical SAM superfamily 79 238 5.7E-10 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMK58_17635 c676769491ab21c2ff168710a78d7af6 318 TIGRFAM TIGR00510 lipA: lipoyl synthase 15 307 8.4E-114 T 11-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AMK58_17635 c676769491ab21c2ff168710a78d7af6 318 Hamap MF_00206 Lipoyl synthase [lipA]. 1 310 156.661 T 11-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AMK58_17635 c676769491ab21c2ff168710a78d7af6 318 SUPERFAMILY SSF102114 38 301 5.76E-62 T 11-10-2018 AMK58_17635 c676769491ab21c2ff168710a78d7af6 318 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 14 61 1.6E-8 T 11-10-2018 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AMK58_17635 c676769491ab21c2ff168710a78d7af6 318 PIRSF PIRSF005963 2 317 2.5E-136 T 11-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AMK58_17635 c676769491ab21c2ff168710a78d7af6 318 Gene3D G3DSA:3.20.20.70 70 293 1.1E-17 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_17635 c676769491ab21c2ff168710a78d7af6 318 SMART SM00729 72 279 2.8E-10 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMK58_09045 b9633facef0c91ae0b300581b2247fd6 168 Gene3D G3DSA:1.10.10.10 19 107 4.2E-33 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_09045 b9633facef0c91ae0b300581b2247fd6 168 Gene3D G3DSA:3.30.1490.190 111 167 4.4E-17 T 11-10-2018 AMK58_09045 b9633facef0c91ae0b300581b2247fd6 168 SUPERFAMILY SSF46785 31 161 2.63E-29 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_09045 b9633facef0c91ae0b300581b2247fd6 168 Pfam PF01475 Ferric uptake regulator family 36 156 1.1E-12 T 11-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 AMK58_01160 2d8abc38a9c057678d4def1dde6e8ddb 313 Pfam PF01841 Transglutaminase-like superfamily 143 246 2.6E-21 T 11-10-2018 IPR002931 Transglutaminase-like AMK58_01160 2d8abc38a9c057678d4def1dde6e8ddb 313 SUPERFAMILY SSF54001 7 274 2.55E-39 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily AMK58_01160 2d8abc38a9c057678d4def1dde6e8ddb 313 SMART SM00460 177 248 3.1E-20 T 11-10-2018 IPR002931 Transglutaminase-like AMK58_01160 2d8abc38a9c057678d4def1dde6e8ddb 313 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 4 83 2.1E-23 T 11-10-2018 IPR013589 Bacterial transglutaminase-like, N-terminal AMK58_01160 2d8abc38a9c057678d4def1dde6e8ddb 313 Gene3D G3DSA:3.10.620.30 103 284 3.1E-35 T 11-10-2018 AMK58_03050 64e276de9df81d8cf263c85a6cb4e956 291 Pfam PF13242 HAD-hyrolase-like 203 285 7.2E-14 T 11-10-2018 AMK58_03050 64e276de9df81d8cf263c85a6cb4e956 291 Gene3D G3DSA:3.40.50.1000 85 202 1.7E-56 T 11-10-2018 IPR023214 HAD superfamily AMK58_03050 64e276de9df81d8cf263c85a6cb4e956 291 TIGRFAM TIGR01459 HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family 10 249 2.8E-56 T 11-10-2018 IPR006356 HAD-superfamily hydrolase, subfamily IIA, hypothetical 3 AMK58_03050 64e276de9df81d8cf263c85a6cb4e956 291 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 20 250 5.7E-36 T 11-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA AMK58_03050 64e276de9df81d8cf263c85a6cb4e956 291 SUPERFAMILY SSF56784 16 262 7.32E-49 T 11-10-2018 IPR036412 HAD-like superfamily AMK58_03050 64e276de9df81d8cf263c85a6cb4e956 291 Pfam PF13344 Haloacid dehalogenase-like hydrolase 20 124 1.6E-17 T 11-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA AMK58_03050 64e276de9df81d8cf263c85a6cb4e956 291 Gene3D G3DSA:3.40.50.1000 18 256 1.7E-56 T 11-10-2018 IPR023214 HAD superfamily AMK58_24700 aeec7bf849e5c3e61cd05c50ba61afec 377 Pfam PF03916 Polysulphide reductase, NrfD 8 312 1.0E-35 T 11-10-2018 IPR005614 NrfD family AMK58_15015 1b45000115eeb12a3d7c591b6218f149 922 SMART SM00642 23 632 2.8E-5 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMK58_15015 1b45000115eeb12a3d7c591b6218f149 922 Gene3D G3DSA:3.20.20.80 9 100 2.2E-24 T 11-10-2018 AMK58_15015 1b45000115eeb12a3d7c591b6218f149 922 TIGRFAM TIGR02401 trehalose_TreY: malto-oligosyltrehalose synthase 10 920 5.5E-301 T 11-10-2018 IPR012767 Maltooligosyl trehalose synthase KEGG: 00500+5.4.99.15|MetaCyc: PWY-2661 AMK58_15015 1b45000115eeb12a3d7c591b6218f149 922 SUPERFAMILY SSF51445 10 829 3.14E-130 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily AMK58_15015 1b45000115eeb12a3d7c591b6218f149 922 Pfam PF00128 Alpha amylase, catalytic domain 32 100 1.9E-13 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMK58_15015 1b45000115eeb12a3d7c591b6218f149 922 Gene3D G3DSA:3.20.20.80 271 541 3.8E-37 T 11-10-2018 AMK58_15015 1b45000115eeb12a3d7c591b6218f149 922 Gene3D G3DSA:3.20.20.80 542 632 1.4E-6 T 11-10-2018 AMK58_15015 1b45000115eeb12a3d7c591b6218f149 922 Gene3D G3DSA:3.20.20.80 667 833 7.8E-43 T 11-10-2018 AMK58_15015 1b45000115eeb12a3d7c591b6218f149 922 Gene3D G3DSA:3.30.1590.10 101 211 1.1E-19 T 11-10-2018 AMK58_14140 61bef20eef7e314d7af9fd66dd61654c 688 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 463 591 2.3E-35 T 11-10-2018 IPR025299 CstA, C-terminal domain AMK58_14140 61bef20eef7e314d7af9fd66dd61654c 688 Pfam PF02554 Carbon starvation protein CstA 32 409 7.2E-168 T 11-10-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 AMK58_09925 4c4f347b60db02a05b2f075721642fb2 126 Gene3D G3DSA:3.40.50.720 2 99 2.5E-9 T 11-10-2018 AMK58_09925 4c4f347b60db02a05b2f075721642fb2 126 SUPERFAMILY SSF51735 6 103 1.92E-15 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_09925 4c4f347b60db02a05b2f075721642fb2 126 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 12 87 6.8E-5 T 11-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 AMK58_06890 f40e2c59b78ab36a7de13313db465c26 464 SUPERFAMILY SSF52467 290 462 8.18E-76 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AMK58_06890 f40e2c59b78ab36a7de13313db465c26 464 Pfam PF02233 NAD(P) transhydrogenase beta subunit 7 461 2.2E-199 T 11-10-2018 IPR034300 NADP transhydrogenase beta-like domain KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 AMK58_06890 f40e2c59b78ab36a7de13313db465c26 464 Gene3D G3DSA:3.40.50.1220 287 463 1.7E-84 T 11-10-2018 AMK58_06890 f40e2c59b78ab36a7de13313db465c26 464 PIRSF PIRSF000204 1 464 7.2E-217 T 11-10-2018 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 AMK58_11040 9f7d5e65a9248378e74394c64ecb576c 415 Pfam PF07969 Amidohydrolase family 51 136 3.6E-8 T 11-10-2018 IPR013108 Amidohydrolase 3 AMK58_11040 9f7d5e65a9248378e74394c64ecb576c 415 Pfam PF07969 Amidohydrolase family 165 384 2.6E-17 T 11-10-2018 IPR013108 Amidohydrolase 3 AMK58_11040 9f7d5e65a9248378e74394c64ecb576c 415 SUPERFAMILY SSF51556 61 376 1.44E-81 T 11-10-2018 IPR032466 Metal-dependent hydrolase AMK58_11040 9f7d5e65a9248378e74394c64ecb576c 415 Gene3D G3DSA:2.30.40.10 23 403 6.4E-127 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMK58_11040 9f7d5e65a9248378e74394c64ecb576c 415 Gene3D G3DSA:3.20.20.140 62 366 6.4E-127 T 11-10-2018 AMK58_11040 9f7d5e65a9248378e74394c64ecb576c 415 SUPERFAMILY SSF51338 4 400 1.87E-17 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMK58_09485 4a977bda6b9c278df2a7667e61665c8f 498 Pfam PF02074 Carboxypeptidase Taq (M32) metallopeptidase 12 485 2.5E-73 T 11-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AMK58_09485 4a977bda6b9c278df2a7667e61665c8f 498 PIRSF PIRSF006615 1 498 1.1E-164 T 11-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AMK58_09485 4a977bda6b9c278df2a7667e61665c8f 498 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 147 167 1.6E-46 T 11-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AMK58_09485 4a977bda6b9c278df2a7667e61665c8f 498 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 244 263 1.6E-46 T 11-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AMK58_09485 4a977bda6b9c278df2a7667e61665c8f 498 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 446 464 1.6E-46 T 11-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AMK58_09485 4a977bda6b9c278df2a7667e61665c8f 498 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 291 307 1.6E-46 T 11-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AMK58_09485 4a977bda6b9c278df2a7667e61665c8f 498 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 332 351 1.6E-46 T 11-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AMK58_09485 4a977bda6b9c278df2a7667e61665c8f 498 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 264 283 1.6E-46 T 11-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AMK58_09485 4a977bda6b9c278df2a7667e61665c8f 498 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 378 395 1.6E-46 T 11-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AMK58_09485 4a977bda6b9c278df2a7667e61665c8f 498 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 401 422 1.6E-46 T 11-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AMK58_09485 4a977bda6b9c278df2a7667e61665c8f 498 Gene3D G3DSA:1.10.1370.30 1 497 6.8E-182 T 11-10-2018 AMK58_09485 4a977bda6b9c278df2a7667e61665c8f 498 SUPERFAMILY SSF55486 4 496 3.57E-110 T 11-10-2018 AMK58_22290 edde4ae9a68cec174e3a10c19b1cb148 276 SUPERFAMILY SSF81296 167 270 3.5E-27 T 11-10-2018 IPR014756 Immunoglobulin E-set AMK58_22290 edde4ae9a68cec174e3a10c19b1cb148 276 TIGRFAM TIGR04557 fuse_rel_SoxYZ: quinoprotein dehydrogenase-associated SoxYZ-like carrier 39 265 1.1E-73 T 11-10-2018 IPR030831 Quinoprotein dehydrogenase-associated SoxYZ-like carrier AMK58_22290 edde4ae9a68cec174e3a10c19b1cb148 276 Gene3D G3DSA:2.60.40.2470 24 152 3.3E-29 T 11-10-2018 IPR038162 Ig-like SoxY domain superfamily AMK58_22290 edde4ae9a68cec174e3a10c19b1cb148 276 Gene3D G3DSA:2.60.40.10 165 272 6.3E-22 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_22290 edde4ae9a68cec174e3a10c19b1cb148 276 Pfam PF13501 Sulfur oxidation protein SoxY 46 152 3.8E-29 T 11-10-2018 IPR032711 Ig-like SoxY domain AMK58_22290 edde4ae9a68cec174e3a10c19b1cb148 276 Pfam PF08770 Sulphur oxidation protein SoxZ 180 268 1.7E-25 T 11-10-2018 IPR014880 Sulphur oxidation protein SoxZ AMK58_28165 9208ab4a32a906659c7e95c5c52443c1 407 Pfam PF13609 Gram-negative porin 10 377 9.8E-46 T 11-10-2018 AMK58_28165 9208ab4a32a906659c7e95c5c52443c1 407 SUPERFAMILY SSF56935 23 398 1.56E-24 T 11-10-2018 AMK58_03695 ab9605ff045e6a071ce2a80f454edaac 316 SUPERFAMILY SSF53187 7 313 1.35E-51 T 11-10-2018 AMK58_03695 ab9605ff045e6a071ce2a80f454edaac 316 Gene3D G3DSA:3.40.630.10 12 315 2.6E-56 T 11-10-2018 AMK58_03695 ab9605ff045e6a071ce2a80f454edaac 316 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 36 305 1.9E-13 T 11-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 AMK58_11215 a196ec6aff5fc36531cc7185070328d8 222 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 47 70 4.7E-8 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_11215 a196ec6aff5fc36531cc7185070328d8 222 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 26 39 4.7E-8 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_11215 a196ec6aff5fc36531cc7185070328d8 222 Pfam PF00440 Bacterial regulatory proteins, tetR family 26 72 5.8E-17 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_11215 a196ec6aff5fc36531cc7185070328d8 222 SUPERFAMILY SSF48498 94 215 5.13E-7 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMK58_11215 a196ec6aff5fc36531cc7185070328d8 222 SUPERFAMILY SSF46689 16 92 9.48E-17 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_11215 a196ec6aff5fc36531cc7185070328d8 222 Gene3D G3DSA:1.10.357.10 14 216 4.8E-35 T 11-10-2018 AMK58_13905 9fab019b8c58e04aa1231fb90bf95083 483 SUPERFAMILY SSF56601 35 455 3.7E-55 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMK58_13905 9fab019b8c58e04aa1231fb90bf95083 483 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 353 367 1.4E-11 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMK58_13905 9fab019b8c58e04aa1231fb90bf95083 483 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 293 315 1.4E-11 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMK58_13905 9fab019b8c58e04aa1231fb90bf95083 483 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 68 87 1.4E-11 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMK58_13905 9fab019b8c58e04aa1231fb90bf95083 483 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 368 382 1.4E-11 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMK58_13905 9fab019b8c58e04aa1231fb90bf95083 483 Gene3D G3DSA:3.50.80.20 97 167 1.3E-15 T 11-10-2018 AMK58_13905 9fab019b8c58e04aa1231fb90bf95083 483 Gene3D G3DSA:3.40.710.10 268 460 3.9E-28 T 11-10-2018 AMK58_13905 9fab019b8c58e04aa1231fb90bf95083 483 TIGRFAM TIGR00666 PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 56 384 3.8E-34 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMK58_13905 9fab019b8c58e04aa1231fb90bf95083 483 Gene3D G3DSA:3.40.710.10 39 96 5.4E-6 T 11-10-2018 AMK58_13905 9fab019b8c58e04aa1231fb90bf95083 483 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 42 453 8.3E-47 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMK58_27755 1bb0c76e70e53517e517f25adbc570c8 396 Gene3D G3DSA:3.40.50.10540 3 390 6.9E-114 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily AMK58_27755 1bb0c76e70e53517e517f25adbc570c8 396 SUPERFAMILY SSF89796 2 395 1.83E-117 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily AMK58_27755 1bb0c76e70e53517e517f25adbc570c8 396 Pfam PF02515 CoA-transferase family III 4 373 7.2E-115 T 11-10-2018 IPR003673 CoA-transferase family III GO:0003824 AMK58_27755 1bb0c76e70e53517e517f25adbc570c8 396 Gene3D G3DSA:3.30.1540.10 234 324 6.9E-114 T 11-10-2018 AMK58_15590 695a5df78aad6ef10823a595b3590a58 99 SUPERFAMILY SSF54909 1 84 3.49E-12 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel AMK58_15590 695a5df78aad6ef10823a595b3590a58 99 Pfam PF07110 EthD domain 18 83 3.9E-5 T 11-10-2018 IPR009799 EthD domain AMK58_15590 695a5df78aad6ef10823a595b3590a58 99 Gene3D G3DSA:3.30.70.100 2 96 1.7E-15 T 11-10-2018 AMK58_15590 695a5df78aad6ef10823a595b3590a58 99 TIGRFAM TIGR02118 TIGR02118: conserved hypothetical protein 1 84 1.9E-10 T 11-10-2018 IPR009799 EthD domain AMK58_05700 3f30d3c155bd810f228aadba6760e29f 85 Pfam PF04226 Transglycosylase associated protein 33 79 1.6E-14 T 11-10-2018 IPR007341 Transglycosylase-associated protein GO:0016021 AMK58_07965 0e2e42706e3246178b81c8a09d90c99f 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 6.0E-23 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_07965 0e2e42706e3246178b81c8a09d90c99f 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 6.0E-23 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_07965 0e2e42706e3246178b81c8a09d90c99f 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 6.0E-23 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_07965 0e2e42706e3246178b81c8a09d90c99f 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 207 227 6.0E-23 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_07965 0e2e42706e3246178b81c8a09d90c99f 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 6.0E-23 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_07965 0e2e42706e3246178b81c8a09d90c99f 256 SUPERFAMILY SSF51735 5 243 6.72E-58 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_07965 0e2e42706e3246178b81c8a09d90c99f 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 241 2.1E-38 T 11-10-2018 AMK58_07965 0e2e42706e3246178b81c8a09d90c99f 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 2.7E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_07965 0e2e42706e3246178b81c8a09d90c99f 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 2.7E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_07965 0e2e42706e3246178b81c8a09d90c99f 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 2.7E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_07965 0e2e42706e3246178b81c8a09d90c99f 256 Gene3D G3DSA:3.40.50.720 3 254 5.4E-62 T 11-10-2018 AMK58_13290 1e0bc5807e31c6528876790a35c4ee53 183 Pfam PF10688 Bacterial inner membrane protein 16 171 5.2E-35 T 11-10-2018 IPR019629 Uncharacterised protein family HI1736/YgjV AMK58_11130 9c391b46ed8d75f5894ae0316819a650 407 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 246 7.0E-39 T 11-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal AMK58_11130 9c391b46ed8d75f5894ae0316819a650 407 SUPERFAMILY SSF53901 1 251 1.99E-53 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_11130 9c391b46ed8d75f5894ae0316819a650 407 SMART SM00825 Beta-ketoacyl synthase 4 377 1.1E-10 T 11-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMK58_11130 9c391b46ed8d75f5894ae0316819a650 407 SUPERFAMILY SSF53901 215 406 4.28E-56 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_11130 9c391b46ed8d75f5894ae0316819a650 407 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 254 363 2.3E-26 T 11-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal AMK58_11130 9c391b46ed8d75f5894ae0316819a650 407 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 155 171 - T 11-10-2018 IPR018201 Beta-ketoacyl synthase, active site AMK58_11130 9c391b46ed8d75f5894ae0316819a650 407 Gene3D G3DSA:3.40.47.10 1 254 4.5E-58 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_11130 9c391b46ed8d75f5894ae0316819a650 407 Gene3D G3DSA:3.40.47.10 260 407 5.2E-43 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_17995 691ac9d14bd4e1c6545531b51ce4aa76 221 SUPERFAMILY SSF53955 42 177 3.87E-17 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily AMK58_17995 691ac9d14bd4e1c6545531b51ce4aa76 221 Gene3D G3DSA:1.10.530.10 42 192 1.3E-10 T 11-10-2018 AMK58_17995 691ac9d14bd4e1c6545531b51ce4aa76 221 Pfam PF01464 Transglycosylase SLT domain 46 168 8.3E-8 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 AMK58_01085 44edeb94139caadbf214535e5055bd0b 151 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 3 131 1.2E-31 T 11-10-2018 IPR000944 Transcription regulator Rrf2-type AMK58_01085 44edeb94139caadbf214535e5055bd0b 151 SUPERFAMILY SSF46785 3 131 1.77E-26 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_01085 44edeb94139caadbf214535e5055bd0b 151 Pfam PF02082 Transcriptional regulator 3 84 7.8E-23 T 11-10-2018 IPR000944 Transcription regulator Rrf2-type AMK58_01085 44edeb94139caadbf214535e5055bd0b 151 Gene3D G3DSA:1.10.10.10 1 145 4.1E-35 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_04970 a75375189c24fbf19bf65559eecade4d 306 SUPERFAMILY SSF46785 6 88 1.4E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_04970 a75375189c24fbf19bf65559eecade4d 306 Pfam PF03466 LysR substrate binding domain 89 295 6.2E-37 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_04970 a75375189c24fbf19bf65559eecade4d 306 SUPERFAMILY SSF53850 91 297 3.44E-38 T 11-10-2018 AMK58_04970 a75375189c24fbf19bf65559eecade4d 306 Gene3D G3DSA:3.40.190.10 165 267 6.0E-50 T 11-10-2018 AMK58_04970 a75375189c24fbf19bf65559eecade4d 306 Gene3D G3DSA:1.10.10.10 4 87 7.6E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_04970 a75375189c24fbf19bf65559eecade4d 306 Gene3D G3DSA:3.40.190.10 93 292 6.0E-50 T 11-10-2018 AMK58_04970 a75375189c24fbf19bf65559eecade4d 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 2.1E-20 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_04970 a75375189c24fbf19bf65559eecade4d 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 3.0E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_04970 a75375189c24fbf19bf65559eecade4d 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 3.0E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_04970 a75375189c24fbf19bf65559eecade4d 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 3.0E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_01645 d48d34213e567cd31e3e3d7d686053fc 432 SUPERFAMILY SSF53244 285 429 8.24E-18 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMK58_01645 d48d34213e567cd31e3e3d7d686053fc 432 ProSitePatterns PS01012 Folylpolyglutamate synthase signature 2. 140 155 - T 11-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 AMK58_01645 d48d34213e567cd31e3e3d7d686053fc 432 TIGRFAM TIGR01499 folC: bifunctional protein FolC 27 428 1.7E-105 T 11-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 AMK58_01645 d48d34213e567cd31e3e3d7d686053fc 432 Gene3D G3DSA:3.90.190.20 298 430 2.7E-16 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMK58_01645 d48d34213e567cd31e3e3d7d686053fc 432 Gene3D G3DSA:3.40.1190.10 3 286 9.7E-91 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMK58_01645 d48d34213e567cd31e3e3d7d686053fc 432 SUPERFAMILY SSF53623 11 285 1.09E-86 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMK58_01645 d48d34213e567cd31e3e3d7d686053fc 432 Pfam PF08245 Mur ligase middle domain 50 263 3.3E-11 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 AMK58_01645 d48d34213e567cd31e3e3d7d686053fc 432 PIRSF PIRSF001563 4 431 6.6E-103 T 11-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 AMK58_08140 68aac981257a129bf04d93527bcd7940 572 Gene3D G3DSA:3.30.300.310 469 569 4.2E-28 T 11-10-2018 AMK58_08140 68aac981257a129bf04d93527bcd7940 572 Pfam PF13193 AMP-binding enzyme C-terminal domain 482 556 2.1E-18 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMK58_08140 68aac981257a129bf04d93527bcd7940 572 SUPERFAMILY SSF56801 22 565 1.18E-151 T 11-10-2018 AMK58_08140 68aac981257a129bf04d93527bcd7940 572 Pfam PF00501 AMP-binding enzyme 43 472 1.6E-105 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMK58_08140 68aac981257a129bf04d93527bcd7940 572 ProSitePatterns PS00455 Putative AMP-binding domain signature. 223 234 - T 11-10-2018 IPR020845 AMP-binding, conserved site AMK58_08140 68aac981257a129bf04d93527bcd7940 572 Gene3D G3DSA:3.40.50.12780 31 468 4.7E-121 T 11-10-2018 AMK58_27085 bec1328e0bdfccada72e8b809fd0688d 237 SMART SM00448 1 111 7.3E-44 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_27085 bec1328e0bdfccada72e8b809fd0688d 237 SMART SM00862 154 230 2.2E-24 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_27085 bec1328e0bdfccada72e8b809fd0688d 237 Gene3D G3DSA:3.40.50.2300 1 122 1.6E-36 T 11-10-2018 AMK58_27085 bec1328e0bdfccada72e8b809fd0688d 237 SUPERFAMILY SSF52172 1 125 1.07E-40 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_27085 bec1328e0bdfccada72e8b809fd0688d 237 Pfam PF00486 Transcriptional regulatory protein, C terminal 154 230 9.6E-23 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_27085 bec1328e0bdfccada72e8b809fd0688d 237 Gene3D G3DSA:1.10.10.10 128 236 4.3E-33 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_27085 bec1328e0bdfccada72e8b809fd0688d 237 Pfam PF00072 Response regulator receiver domain 3 112 1.6E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_27085 bec1328e0bdfccada72e8b809fd0688d 237 SUPERFAMILY SSF46894 132 231 3.97E-25 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMK58_09445 c45f672a4dc507229281363e55e88dbb 160 SUPERFAMILY SSF52833 1 160 2.72E-40 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_09445 c45f672a4dc507229281363e55e88dbb 160 Pfam PF08534 Redoxin 4 157 4.6E-38 T 11-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 AMK58_09445 c45f672a4dc507229281363e55e88dbb 160 Gene3D G3DSA:3.40.30.10 1 160 9.0E-62 T 11-10-2018 AMK58_11730 7074c1c5bb87f5cfbb2d6558e9e8e9d3 165 PRINTS PR00502 NUDIX hydrolase family signature 54 69 1.9E-5 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AMK58_11730 7074c1c5bb87f5cfbb2d6558e9e8e9d3 165 PRINTS PR00502 NUDIX hydrolase family signature 40 54 1.9E-5 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AMK58_11730 7074c1c5bb87f5cfbb2d6558e9e8e9d3 165 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 7 160 33.878 T 11-10-2018 IPR022927 RNA pyrophosphohydrolase RppH AMK58_11730 7074c1c5bb87f5cfbb2d6558e9e8e9d3 165 ProSitePatterns PS00893 Nudix box signature. 45 66 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMK58_11730 7074c1c5bb87f5cfbb2d6558e9e8e9d3 165 Pfam PF00293 NUDIX domain 13 149 6.8E-25 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMK58_11730 7074c1c5bb87f5cfbb2d6558e9e8e9d3 165 Gene3D G3DSA:3.90.79.10 3 159 3.7E-44 T 11-10-2018 AMK58_11730 7074c1c5bb87f5cfbb2d6558e9e8e9d3 165 SUPERFAMILY SSF55811 5 157 7.45E-32 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMK58_19500 15e8f19887ea7fa84020c924cfd565e9 353 Pfam PF00448 SRP54-type protein, GTPase domain 138 322 1.9E-27 T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMK58_19500 15e8f19887ea7fa84020c924cfd565e9 353 SUPERFAMILY SSF52540 134 306 1.2E-20 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_19500 15e8f19887ea7fa84020c924cfd565e9 353 SMART SM00962 135 324 3.4E-22 T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMK58_19500 15e8f19887ea7fa84020c924cfd565e9 353 Gene3D G3DSA:3.40.50.300 129 332 4.4E-39 T 11-10-2018 AMK58_19500 15e8f19887ea7fa84020c924cfd565e9 353 SMART SM00382 134 313 9.5E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_04730 4cab08a6ae5fc63616e76638ed48f7d3 257 Gene3D G3DSA:1.25.10.10 11 247 7.0E-74 T 11-10-2018 IPR011989 Armadillo-like helical AMK58_04730 4cab08a6ae5fc63616e76638ed48f7d3 257 Pfam PF05484 LRV protein FeS4 cluster 8 59 9.3E-26 T 11-10-2018 IPR008665 LRV FeS4 cluster AMK58_04730 4cab08a6ae5fc63616e76638ed48f7d3 257 SUPERFAMILY SSF48371 14 237 4.34E-44 T 11-10-2018 IPR016024 Armadillo-type fold AMK58_04730 4cab08a6ae5fc63616e76638ed48f7d3 257 Pfam PF01816 Leucine rich repeat variant 92 114 1.9E-5 T 11-10-2018 IPR004830 Leucine rich repeat variant AMK58_28890 86b8fb0d55a6d3e15bc21ac9c5c7b75d 415 Pfam PF12000 Gkycosyl transferase family 4 group 26 191 5.3E-64 T 11-10-2018 IPR022623 Domain of unknown function DUF3495 AMK58_28890 86b8fb0d55a6d3e15bc21ac9c5c7b75d 415 Pfam PF00534 Glycosyl transferases group 1 211 380 2.6E-14 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 AMK58_28890 86b8fb0d55a6d3e15bc21ac9c5c7b75d 415 Gene3D G3DSA:3.40.50.2000 187 382 2.8E-35 T 11-10-2018 AMK58_28890 86b8fb0d55a6d3e15bc21ac9c5c7b75d 415 Gene3D G3DSA:3.40.50.2000 17 391 2.8E-35 T 11-10-2018 AMK58_28890 86b8fb0d55a6d3e15bc21ac9c5c7b75d 415 SUPERFAMILY SSF53756 16 391 1.31E-41 T 11-10-2018 AMK58_08015 48338435a312edffb9c2cde20b42e23c 467 SMART SM00382 199 340 0.22 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_08015 48338435a312edffb9c2cde20b42e23c 467 SMART SM00382 1 142 2.1 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_08015 48338435a312edffb9c2cde20b42e23c 467 Hamap MF_00195 GTPase Der [der]. 2 461 37.284 T 11-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 AMK58_08015 48338435a312edffb9c2cde20b42e23c 467 SUPERFAMILY SSF52540 3 169 1.28E-43 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_08015 48338435a312edffb9c2cde20b42e23c 467 Gene3D G3DSA:3.30.300.20 378 461 1.0E-31 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta AMK58_08015 48338435a312edffb9c2cde20b42e23c 467 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 200 368 6.3E-29 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMK58_08015 48338435a312edffb9c2cde20b42e23c 467 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 122 2.0E-24 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMK58_08015 48338435a312edffb9c2cde20b42e23c 467 SUPERFAMILY SSF52540 138 465 5.14E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_08015 48338435a312edffb9c2cde20b42e23c 467 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 273 291 2.5E-7 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMK58_08015 48338435a312edffb9c2cde20b42e23c 467 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 203 223 2.5E-7 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMK58_08015 48338435a312edffb9c2cde20b42e23c 467 Pfam PF01926 50S ribosome-binding GTPase 5 120 2.9E-27 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMK58_08015 48338435a312edffb9c2cde20b42e23c 467 Pfam PF01926 50S ribosome-binding GTPase 202 320 4.7E-24 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMK58_08015 48338435a312edffb9c2cde20b42e23c 467 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 378 458 7.4E-32 T 11-10-2018 IPR032859 GTPase Der, C-terminal KH-domain-like AMK58_08015 48338435a312edffb9c2cde20b42e23c 467 PIRSF PIRSF006485 1 466 3.4E-162 T 11-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 AMK58_08015 48338435a312edffb9c2cde20b42e23c 467 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 4 457 2.3E-165 T 11-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 AMK58_08015 48338435a312edffb9c2cde20b42e23c 467 Gene3D G3DSA:3.40.50.300 195 373 4.6E-50 T 11-10-2018 AMK58_08015 48338435a312edffb9c2cde20b42e23c 467 Gene3D G3DSA:3.40.50.300 4 163 1.0E-43 T 11-10-2018 AMK58_21460 1158ef620c944ccd067d6ef4829f3742 323 Pfam PF04796 Plasmid encoded RepA protein 95 258 7.8E-45 T 11-10-2018 IPR006881 Plasmid encoded RepA protein AMK58_21775 a4a7ebf2b3be9ff42bf343f088199a81 439 SMART SM00387 325 430 1.5E-16 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_21775 a4a7ebf2b3be9ff42bf343f088199a81 439 SUPERFAMILY SSF55874 292 430 1.83E-23 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_21775 a4a7ebf2b3be9ff42bf343f088199a81 439 Gene3D G3DSA:1.10.287.130 193 277 7.9E-7 T 11-10-2018 AMK58_21775 a4a7ebf2b3be9ff42bf343f088199a81 439 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 329 429 7.7E-14 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_21775 a4a7ebf2b3be9ff42bf343f088199a81 439 PRINTS PR00344 Bacterial sensor protein C-terminal signature 390 408 3.3E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_21775 a4a7ebf2b3be9ff42bf343f088199a81 439 PRINTS PR00344 Bacterial sensor protein C-terminal signature 414 427 3.3E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_21775 a4a7ebf2b3be9ff42bf343f088199a81 439 PRINTS PR00344 Bacterial sensor protein C-terminal signature 360 374 3.3E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_21775 a4a7ebf2b3be9ff42bf343f088199a81 439 SUPERFAMILY SSF47384 211 278 1.02E-6 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_21775 a4a7ebf2b3be9ff42bf343f088199a81 439 SMART SM00388 216 283 0.0094 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_21775 a4a7ebf2b3be9ff42bf343f088199a81 439 Gene3D G3DSA:3.30.565.10 286 429 1.9E-22 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_28425 477206ccaee0cc0cdc214bf563e54ecf 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 225 7.5E-17 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_28425 477206ccaee0cc0cdc214bf563e54ecf 229 Pfam PF00072 Response regulator receiver domain 6 113 8.4E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_28425 477206ccaee0cc0cdc214bf563e54ecf 229 SMART SM00862 151 225 4.3E-18 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_28425 477206ccaee0cc0cdc214bf563e54ecf 229 Gene3D G3DSA:1.10.10.10 126 227 2.2E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_28425 477206ccaee0cc0cdc214bf563e54ecf 229 SUPERFAMILY SSF46894 125 225 3.27E-19 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMK58_28425 477206ccaee0cc0cdc214bf563e54ecf 229 Gene3D G3DSA:3.40.50.2300 2 125 1.8E-35 T 11-10-2018 AMK58_28425 477206ccaee0cc0cdc214bf563e54ecf 229 SMART SM00448 3 113 2.4E-35 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_28425 477206ccaee0cc0cdc214bf563e54ecf 229 SUPERFAMILY SSF52172 4 126 3.42E-38 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_13005 93c676389c1b2ccc953e5c6e7fd0d875 339 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 118 339 3.7E-44 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_13005 93c676389c1b2ccc953e5c6e7fd0d875 339 SUPERFAMILY SSF161098 96 324 1.57E-16 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_17605 89f8f417d9342e3643344500e93bcd19 400 Gene3D G3DSA:1.10.287.130 159 215 2.9E-9 T 11-10-2018 AMK58_17605 89f8f417d9342e3643344500e93bcd19 400 SMART SM00388 156 220 3.4E-12 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_17605 89f8f417d9342e3643344500e93bcd19 400 SUPERFAMILY SSF55785 36 107 4.54E-10 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_17605 89f8f417d9342e3643344500e93bcd19 400 Gene3D G3DSA:3.30.450.20 34 137 3.2E-11 T 11-10-2018 AMK58_17605 89f8f417d9342e3643344500e93bcd19 400 PRINTS PR00344 Bacterial sensor protein C-terminal signature 313 327 1.3E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_17605 89f8f417d9342e3643344500e93bcd19 400 PRINTS PR00344 Bacterial sensor protein C-terminal signature 342 360 1.3E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_17605 89f8f417d9342e3643344500e93bcd19 400 PRINTS PR00344 Bacterial sensor protein C-terminal signature 365 378 1.3E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_17605 89f8f417d9342e3643344500e93bcd19 400 PRINTS PR00344 Bacterial sensor protein C-terminal signature 331 341 1.3E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_17605 89f8f417d9342e3643344500e93bcd19 400 Pfam PF00512 His Kinase A (phospho-acceptor) domain 159 215 3.2E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_17605 89f8f417d9342e3643344500e93bcd19 400 SUPERFAMILY SSF47384 151 215 6.67E-9 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_17605 89f8f417d9342e3643344500e93bcd19 400 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 262 378 2.5E-17 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_17605 89f8f417d9342e3643344500e93bcd19 400 SMART SM00091 31 98 8.9E-11 T 11-10-2018 IPR000014 PAS domain AMK58_17605 89f8f417d9342e3643344500e93bcd19 400 Gene3D G3DSA:3.30.565.10 219 379 3.5E-37 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_17605 89f8f417d9342e3643344500e93bcd19 400 Pfam PF00989 PAS fold 34 136 1.5E-17 T 11-10-2018 IPR013767 PAS fold GO:0006355 AMK58_17605 89f8f417d9342e3643344500e93bcd19 400 SUPERFAMILY SSF55874 224 378 1.31E-33 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_17605 89f8f417d9342e3643344500e93bcd19 400 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 36 107 2.0E-8 T 11-10-2018 IPR000014 PAS domain AMK58_17605 89f8f417d9342e3643344500e93bcd19 400 SMART SM00387 261 381 5.6E-30 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_24565 ace70e635e2726fe4ff88b9c52f51321 721 SMART SM00710 677 700 350.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_24565 ace70e635e2726fe4ff88b9c52f51321 721 SMART SM00710 602 623 3300.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_24565 ace70e635e2726fe4ff88b9c52f51321 721 SMART SM00710 624 646 71.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_24565 ace70e635e2726fe4ff88b9c52f51321 721 SMART SM00710 276 321 5300.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_24565 ace70e635e2726fe4ff88b9c52f51321 721 SMART SM00710 516 538 460.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_24565 ace70e635e2726fe4ff88b9c52f51321 721 SMART SM00710 468 490 700.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_24565 ace70e635e2726fe4ff88b9c52f51321 721 SMART SM00710 492 514 0.48 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_24565 ace70e635e2726fe4ff88b9c52f51321 721 Pfam PF13229 Right handed beta helix region 459 601 7.7E-10 T 11-10-2018 IPR039448 Right handed beta helix domain AMK58_24565 ace70e635e2726fe4ff88b9c52f51321 721 Pfam PF16841 Ca-dependent carbohydrate-binding module xylan-binding 75 166 3.5E-31 T 11-10-2018 IPR031768 Carbohydrate binding module, xylan-binding domain MetaCyc: PWY-6717|MetaCyc: PWY-6784 AMK58_24565 ace70e635e2726fe4ff88b9c52f51321 721 Pfam PF16841 Ca-dependent carbohydrate-binding module xylan-binding 210 301 6.4E-31 T 11-10-2018 IPR031768 Carbohydrate binding module, xylan-binding domain MetaCyc: PWY-6717|MetaCyc: PWY-6784 AMK58_24565 ace70e635e2726fe4ff88b9c52f51321 721 SUPERFAMILY SSF51126 372 693 2.04E-33 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor AMK58_24565 ace70e635e2726fe4ff88b9c52f51321 721 Gene3D G3DSA:2.160.20.10 367 719 4.9E-31 T 11-10-2018 IPR012334 Pectin lyase fold AMK58_24565 ace70e635e2726fe4ff88b9c52f51321 721 Gene3D G3DSA:2.60.60.40 72 187 5.1E-10 T 11-10-2018 AMK58_24565 ace70e635e2726fe4ff88b9c52f51321 721 Gene3D G3DSA:2.60.60.40 208 320 6.0E-9 T 11-10-2018 AMK58_00995 e381a9b011459b0bf733c4830d9a5ce5 295 SUPERFAMILY SSF46626 30 202 3.3E-27 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_00995 e381a9b011459b0bf733c4830d9a5ce5 295 Pfam PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP 11 57 4.5E-25 T 11-10-2018 IPR032858 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal AMK58_00995 e381a9b011459b0bf733c4830d9a5ce5 295 Gene3D G3DSA:1.10.760.10 175 268 7.3E-62 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_00995 e381a9b011459b0bf733c4830d9a5ce5 295 Gene3D G3DSA:1.10.760.10 82 291 7.3E-62 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_00995 e381a9b011459b0bf733c4830d9a5ce5 295 SUPERFAMILY SSF46626 204 293 8.61E-26 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_00995 e381a9b011459b0bf733c4830d9a5ce5 295 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 207 288 1.7E-15 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_00995 e381a9b011459b0bf733c4830d9a5ce5 295 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 109 196 7.4E-11 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_00995 e381a9b011459b0bf733c4830d9a5ce5 295 PRINTS PR00605 Class IC cytochrome C signature 266 288 5.1E-9 T 11-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 AMK58_00995 e381a9b011459b0bf733c4830d9a5ce5 295 PRINTS PR00605 Class IC cytochrome C signature 119 130 5.1E-9 T 11-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 AMK58_00995 e381a9b011459b0bf733c4830d9a5ce5 295 PIRSF PIRSF000006 1 295 2.9E-112 T 11-10-2018 IPR004678 Cytochrome c oxidase cbb3-type, subunit III AMK58_00995 e381a9b011459b0bf733c4830d9a5ce5 295 TIGRFAM TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III 7 294 8.4E-100 T 11-10-2018 IPR004678 Cytochrome c oxidase cbb3-type, subunit III AMK58_00995 e381a9b011459b0bf733c4830d9a5ce5 295 Gene3D G3DSA:1.20.58.1490 1 69 2.3E-20 T 11-10-2018 IPR038414 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal domain superfamily AMK58_23730 658c7ff47b4a8ba1f300fd58e3f34708 67 Pfam PF11450 Protein of unknwon function (DUF3008) 4 59 7.9E-27 T 11-10-2018 IPR021553 Protein of unknwon function DUF3008 AMK58_10785 e758debba9c43151987ebb811f4c66dd 370 Pfam PF12275 Protein of unknown function (DUF3616) 25 350 1.3E-122 T 11-10-2018 IPR022060 Protein of unknown function DUF3616 AMK58_02010 8e66ea995c61cf567c9bb00a526dc4ef 469 SUPERFAMILY SSF48452 87 203 5.69E-6 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_02010 8e66ea995c61cf567c9bb00a526dc4ef 469 Pfam PF07219 HemY protein N-terminus 26 132 9.5E-28 T 11-10-2018 IPR010817 HemY, N-terminal AMK58_02010 8e66ea995c61cf567c9bb00a526dc4ef 469 SUPERFAMILY SSF48452 163 360 3.54E-12 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_02010 8e66ea995c61cf567c9bb00a526dc4ef 469 Gene3D G3DSA:1.25.40.10 68 311 5.0E-17 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_02010 8e66ea995c61cf567c9bb00a526dc4ef 469 PIRSF PIRSF031802 1 464 2.6E-136 T 11-10-2018 IPR016982 Uncharacterised conserved protein UCP031802 AMK58_02010 8e66ea995c61cf567c9bb00a526dc4ef 469 Gene3D G3DSA:1.25.40.10 312 400 4.2E-5 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_10915 269e9be531fc93977429023c89393d64 154 SUPERFAMILY SSF47188 19 147 3.92E-35 T 11-10-2018 IPR035938 Hemerythrin-like superfamily AMK58_10915 269e9be531fc93977429023c89393d64 154 ProSitePatterns PS00550 Hemerythrin family signature. 77 100 - T 11-10-2018 IPR016131 Haemerythrin, iron-binding site GO:0046872 AMK58_10915 269e9be531fc93977429023c89393d64 154 Gene3D G3DSA:1.20.120.50 19 153 2.3E-39 T 11-10-2018 IPR035938 Hemerythrin-like superfamily AMK58_10915 269e9be531fc93977429023c89393d64 154 Pfam PF01814 Hemerythrin HHE cation binding domain 34 143 9.1E-14 T 11-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 AMK58_10915 269e9be531fc93977429023c89393d64 154 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 24 147 6.5E-34 T 11-10-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 AMK58_21390 6e13a792994fb657d6b3b631bc707886 118 Gene3D G3DSA:2.102.10.10 4 108 5.1E-26 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMK58_21390 6e13a792994fb657d6b3b631bc707886 118 Pfam PF00355 Rieske [2Fe-2S] domain 6 83 9.6E-15 T 11-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMK58_21390 6e13a792994fb657d6b3b631bc707886 118 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 6 104 1.1E-27 T 11-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 AMK58_21390 6e13a792994fb657d6b3b631bc707886 118 SUPERFAMILY SSF50022 6 106 2.75E-33 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMK58_20560 f726e9d5e2556e703df3fff1ba35ed0d 402 Gene3D G3DSA:3.40.50.2000 178 352 1.2E-51 T 11-10-2018 AMK58_20560 f726e9d5e2556e703df3fff1ba35ed0d 402 SUPERFAMILY SSF53756 19 372 3.45E-59 T 11-10-2018 AMK58_20560 f726e9d5e2556e703df3fff1ba35ed0d 402 Pfam PF13439 Glycosyltransferase Family 4 65 178 1.7E-8 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AMK58_20560 f726e9d5e2556e703df3fff1ba35ed0d 402 Pfam PF00534 Glycosyl transferases group 1 199 349 2.1E-27 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 AMK58_20560 f726e9d5e2556e703df3fff1ba35ed0d 402 Gene3D G3DSA:3.40.50.2000 78 369 1.2E-51 T 11-10-2018 AMK58_02590 06baf79fa68c726892bad320c4c3b86b 522 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 44 53 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMK58_02590 06baf79fa68c726892bad320c4c3b86b 522 SUPERFAMILY SSF52374 13 330 2.53E-58 T 11-10-2018 AMK58_02590 06baf79fa68c726892bad320c4c3b86b 522 SUPERFAMILY SSF48163 329 519 5.75E-40 T 11-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AMK58_02590 06baf79fa68c726892bad320c4c3b86b 522 Gene3D G3DSA:3.40.50.620 21 281 6.7E-72 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_02590 06baf79fa68c726892bad320c4c3b86b 522 Gene3D G3DSA:1.10.10.350 427 519 4.6E-18 T 11-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AMK58_02590 06baf79fa68c726892bad320c4c3b86b 522 Gene3D G3DSA:2.30.30.300 183 228 6.7E-72 T 11-10-2018 IPR023386 Lysine-tRNA ligase, insertion domain superfamily GO:0004824 KEGG: 00970+6.1.1.6 AMK58_02590 06baf79fa68c726892bad320c4c3b86b 522 Pfam PF01921 tRNA synthetases class I (K) 12 365 3.9E-134 T 11-10-2018 IPR002904 Lysine-tRNA ligase GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 AMK58_02590 06baf79fa68c726892bad320c4c3b86b 522 Hamap MF_00177 Lysine--tRNA ligase [lysS]. 12 520 30.075 T 11-10-2018 IPR002904 Lysine-tRNA ligase GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 AMK58_07510 d444d362047b39ab41eff1951d8e9540 511 Pfam PF02872 5'-nucleotidase, C-terminal domain 316 472 1.7E-46 T 11-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMK58_07510 d444d362047b39ab41eff1951d8e9540 511 SUPERFAMILY SSF55816 316 509 8.24E-57 T 11-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMK58_07510 d444d362047b39ab41eff1951d8e9540 511 Gene3D G3DSA:3.60.21.10 30 311 4.4E-60 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like AMK58_07510 d444d362047b39ab41eff1951d8e9540 511 PRINTS PR01607 Apyrase family signature 373 396 2.6E-26 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMK58_07510 d444d362047b39ab41eff1951d8e9540 511 PRINTS PR01607 Apyrase family signature 247 267 2.6E-26 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMK58_07510 d444d362047b39ab41eff1951d8e9540 511 PRINTS PR01607 Apyrase family signature 221 244 2.6E-26 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMK58_07510 d444d362047b39ab41eff1951d8e9540 511 PRINTS PR01607 Apyrase family signature 202 219 2.6E-26 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMK58_07510 d444d362047b39ab41eff1951d8e9540 511 PRINTS PR01607 Apyrase family signature 446 465 2.6E-26 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMK58_07510 d444d362047b39ab41eff1951d8e9540 511 Gene3D G3DSA:3.90.780.10 316 511 2.9E-64 T 11-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMK58_07510 d444d362047b39ab41eff1951d8e9540 511 SUPERFAMILY SSF56300 36 310 7.4E-64 T 11-10-2018 AMK58_07510 d444d362047b39ab41eff1951d8e9540 511 Pfam PF00149 Calcineurin-like phosphoesterase 38 239 4.4E-6 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AMK58_15045 c31c4fa2cb90ce3be18d260c295e5fd2 160 SMART SM00347 48 148 1.6E-20 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_15045 c31c4fa2cb90ce3be18d260c295e5fd2 160 SUPERFAMILY SSF46785 28 158 2.21E-30 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_15045 c31c4fa2cb90ce3be18d260c295e5fd2 160 Pfam PF01047 MarR family 55 111 1.5E-13 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_15045 c31c4fa2cb90ce3be18d260c295e5fd2 160 PRINTS PR00598 Bacterial regulatory protein MarR family signature 138 158 4.6E-8 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_15045 c31c4fa2cb90ce3be18d260c295e5fd2 160 PRINTS PR00598 Bacterial regulatory protein MarR family signature 72 88 4.6E-8 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_15045 c31c4fa2cb90ce3be18d260c295e5fd2 160 PRINTS PR00598 Bacterial regulatory protein MarR family signature 89 104 4.6E-8 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_15045 c31c4fa2cb90ce3be18d260c295e5fd2 160 PRINTS PR00598 Bacterial regulatory protein MarR family signature 108 124 4.6E-8 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_15045 c31c4fa2cb90ce3be18d260c295e5fd2 160 Gene3D G3DSA:1.10.10.10 24 159 1.6E-32 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_21355 76dc89713181f90e2b7970cc11fa04f9 581 Gene3D G3DSA:1.25.40.10 352 551 9.3E-16 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_21355 76dc89713181f90e2b7970cc11fa04f9 581 SUPERFAMILY SSF48452 392 542 3.8E-13 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_21355 76dc89713181f90e2b7970cc11fa04f9 581 SMART SM00028 444 477 190.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_21355 76dc89713181f90e2b7970cc11fa04f9 581 SMART SM00028 508 541 0.047 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_21355 76dc89713181f90e2b7970cc11fa04f9 581 SMART SM00028 410 443 350.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_28490 85fa67fb9e1f6aeabccf397621bb6aaa 525 SUPERFAMILY SSF51004 113 517 1.57E-76 T 11-10-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily AMK58_28490 85fa67fb9e1f6aeabccf397621bb6aaa 525 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 32 103 6.2E-12 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_28490 85fa67fb9e1f6aeabccf397621bb6aaa 525 SUPERFAMILY SSF46626 5 123 3.67E-19 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_28490 85fa67fb9e1f6aeabccf397621bb6aaa 525 Gene3D G3DSA:1.10.760.10 7 106 4.0E-18 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_28490 85fa67fb9e1f6aeabccf397621bb6aaa 525 Pfam PF02239 Cytochrome D1 heme domain 320 516 1.5E-45 T 11-10-2018 AMK58_28490 85fa67fb9e1f6aeabccf397621bb6aaa 525 Pfam PF02239 Cytochrome D1 heme domain 140 295 2.0E-53 T 11-10-2018 AMK58_28490 85fa67fb9e1f6aeabccf397621bb6aaa 525 Gene3D G3DSA:2.140.10.20 112 519 7.3E-118 T 11-10-2018 IPR003143 Cytochrome cd1-nitrite reductase, C-terminal domain superfamily AMK58_03745 e797c8114efa1c439a99f4e434a3b8ac 746 Gene3D G3DSA:3.30.565.10 573 726 9.4E-33 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_03745 e797c8114efa1c439a99f4e434a3b8ac 746 PRINTS PR00344 Bacterial sensor protein C-terminal signature 713 726 5.9E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_03745 e797c8114efa1c439a99f4e434a3b8ac 746 PRINTS PR00344 Bacterial sensor protein C-terminal signature 654 668 5.9E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_03745 e797c8114efa1c439a99f4e434a3b8ac 746 PRINTS PR00344 Bacterial sensor protein C-terminal signature 689 707 5.9E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_03745 e797c8114efa1c439a99f4e434a3b8ac 746 PRINTS PR00344 Bacterial sensor protein C-terminal signature 672 682 5.9E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_03745 e797c8114efa1c439a99f4e434a3b8ac 746 Pfam PF08448 PAS fold 384 488 4.3E-13 T 11-10-2018 IPR013656 PAS fold-4 AMK58_03745 e797c8114efa1c439a99f4e434a3b8ac 746 SUPERFAMILY SSF55785 366 487 2.24E-16 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_03745 e797c8114efa1c439a99f4e434a3b8ac 746 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 619 725 1.8E-21 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_03745 e797c8114efa1c439a99f4e434a3b8ac 746 SUPERFAMILY SSF55874 563 725 1.57E-36 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_03745 e797c8114efa1c439a99f4e434a3b8ac 746 Pfam PF00512 His Kinase A (phospho-acceptor) domain 509 574 9.4E-8 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_03745 e797c8114efa1c439a99f4e434a3b8ac 746 Gene3D G3DSA:1.10.287.130 499 572 2.3E-13 T 11-10-2018 AMK58_03745 e797c8114efa1c439a99f4e434a3b8ac 746 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 374 496 5.0E-11 T 11-10-2018 IPR000014 PAS domain AMK58_03745 e797c8114efa1c439a99f4e434a3b8ac 746 SUPERFAMILY SSF47384 494 575 3.92E-13 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_03745 e797c8114efa1c439a99f4e434a3b8ac 746 Pfam PF03924 CHASE domain 80 263 1.5E-27 T 11-10-2018 IPR006189 CHASE domain AMK58_03745 e797c8114efa1c439a99f4e434a3b8ac 746 Gene3D G3DSA:3.30.450.350 81 268 3.6E-9 T 11-10-2018 AMK58_03745 e797c8114efa1c439a99f4e434a3b8ac 746 Gene3D G3DSA:3.30.450.20 364 498 4.2E-18 T 11-10-2018 AMK58_03745 e797c8114efa1c439a99f4e434a3b8ac 746 SMART SM01079 75 276 6.3E-19 T 11-10-2018 IPR006189 CHASE domain AMK58_03745 e797c8114efa1c439a99f4e434a3b8ac 746 SMART SM00387 618 729 4.5E-27 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_03745 e797c8114efa1c439a99f4e434a3b8ac 746 SMART SM00388 509 574 4.8E-8 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_05500 636104ba268018cf3a57cbb26961a836 330 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 16 293 8.6E-65 T 11-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 AMK58_05500 636104ba268018cf3a57cbb26961a836 330 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 16 303 25.391 T 11-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 AMK58_05500 636104ba268018cf3a57cbb26961a836 330 Pfam PF01715 IPP transferase 49 292 2.1E-59 T 11-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 AMK58_05500 636104ba268018cf3a57cbb26961a836 330 SUPERFAMILY SSF52540 17 158 2.36E-14 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_05500 636104ba268018cf3a57cbb26961a836 330 Gene3D G3DSA:1.10.20.140 123 193 1.7E-78 T 11-10-2018 AMK58_05500 636104ba268018cf3a57cbb26961a836 330 Gene3D G3DSA:3.40.50.300 20 292 1.7E-78 T 11-10-2018 AMK58_12910 6367b4229c67d86678fa74dfc6a5790a 216 Pfam PF00691 OmpA family 111 206 2.2E-20 T 11-10-2018 IPR006665 OmpA-like domain AMK58_12910 6367b4229c67d86678fa74dfc6a5790a 216 ProSitePatterns PS01068 OmpA-like domain. 146 191 - T 11-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 AMK58_12910 6367b4229c67d86678fa74dfc6a5790a 216 PRINTS PR01021 OMPA domain signature 159 175 9.5E-15 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMK58_12910 6367b4229c67d86678fa74dfc6a5790a 216 PRINTS PR01021 OMPA domain signature 144 159 9.5E-15 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMK58_12910 6367b4229c67d86678fa74dfc6a5790a 216 PRINTS PR01021 OMPA domain signature 112 134 9.5E-15 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMK58_12910 6367b4229c67d86678fa74dfc6a5790a 216 Gene3D G3DSA:3.30.1330.60 89 215 8.1E-30 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMK58_12910 6367b4229c67d86678fa74dfc6a5790a 216 SUPERFAMILY SSF103088 95 212 3.4E-28 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMK58_00190 52e130d2661284dbe0f73b1ed9a7e924 195 SMART SM00855 3 149 2.1E-17 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMK58_00190 52e130d2661284dbe0f73b1ed9a7e924 195 SUPERFAMILY SSF53254 1 183 6.21E-38 T 11-10-2018 IPR029033 Histidine phosphatase superfamily AMK58_00190 52e130d2661284dbe0f73b1ed9a7e924 195 Gene3D G3DSA:3.40.50.1240 1 185 2.1E-35 T 11-10-2018 IPR029033 Histidine phosphatase superfamily AMK58_00190 52e130d2661284dbe0f73b1ed9a7e924 195 PIRSF PIRSF000709 3 162 8.3E-8 T 11-10-2018 AMK58_00190 52e130d2661284dbe0f73b1ed9a7e924 195 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 188 4.9E-33 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMK58_21285 7f9cf04b7581e489a3870c509e81b55b 417 SUPERFAMILY SSF51971 21 383 8.36E-49 T 11-10-2018 AMK58_21285 7f9cf04b7581e489a3870c509e81b55b 417 Gene3D G3DSA:3.40.50.720 296 389 7.8E-21 T 11-10-2018 AMK58_21285 7f9cf04b7581e489a3870c509e81b55b 417 Gene3D G3DSA:3.40.50.720 18 119 1.9E-31 T 11-10-2018 AMK58_21285 7f9cf04b7581e489a3870c509e81b55b 417 TIGRFAM TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase 21 376 3.4E-117 T 11-10-2018 IPR004379 UDP-galactopyranose mutase GO:0008767 KEGG: 00052+5.4.99.9|KEGG: 00520+5.4.99.9|MetaCyc: PWY-6397|MetaCyc: PWY-7328|MetaCyc: PWY-7622 AMK58_21285 7f9cf04b7581e489a3870c509e81b55b 417 Pfam PF03275 UDP-galactopyranose mutase 166 363 1.3E-80 T 11-10-2018 IPR015899 UDP-galactopyranose mutase, C-terminal GO:0008767 KEGG: 00052+5.4.99.9|KEGG: 00520+5.4.99.9|MetaCyc: PWY-6397|MetaCyc: PWY-7328|MetaCyc: PWY-7622 AMK58_21285 7f9cf04b7581e489a3870c509e81b55b 417 Pfam PF13450 NAD(P)-binding Rossmann-like domain 25 92 4.0E-16 T 11-10-2018 AMK58_21285 7f9cf04b7581e489a3870c509e81b55b 417 SUPERFAMILY SSF54373 265 330 1.31E-21 T 11-10-2018 AMK58_21285 7f9cf04b7581e489a3870c509e81b55b 417 Gene3D G3DSA:3.40.50.720 169 284 1.5E-26 T 11-10-2018 AMK58_20915 703b1033f352c738f9514fe94a6b9b4d 384 Pfam PF00202 Aminotransferase class-III 8 378 2.0E-112 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMK58_20915 703b1033f352c738f9514fe94a6b9b4d 384 SUPERFAMILY SSF53383 2 382 1.04E-121 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_20915 703b1033f352c738f9514fe94a6b9b4d 384 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 206 243 - T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMK58_20915 703b1033f352c738f9514fe94a6b9b4d 384 Gene3D G3DSA:3.40.640.10 43 288 9.5E-137 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_20915 703b1033f352c738f9514fe94a6b9b4d 384 PIRSF PIRSF000521 157 383 2.0E-39 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMK58_20915 703b1033f352c738f9514fe94a6b9b4d 384 PIRSF PIRSF000521 5 147 1.1E-7 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMK58_20915 703b1033f352c738f9514fe94a6b9b4d 384 Gene3D G3DSA:3.90.1150.10 9 373 9.5E-137 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_20915 703b1033f352c738f9514fe94a6b9b4d 384 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 1 378 1.4E-139 T 11-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 AMK58_20915 703b1033f352c738f9514fe94a6b9b4d 384 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 1 383 67.3 T 11-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 AMK58_19200 cd104832ce574b42a16bfddf22381c35 201 SUPERFAMILY SSF52833 1 85 1.83E-16 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_19200 cd104832ce574b42a16bfddf22381c35 201 SUPERFAMILY SSF47616 71 199 6.59E-13 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMK58_19200 cd104832ce574b42a16bfddf22381c35 201 Gene3D G3DSA:3.40.30.10 4 193 4.0E-67 T 11-10-2018 AMK58_19200 cd104832ce574b42a16bfddf22381c35 201 Gene3D G3DSA:1.20.1050.10 81 190 4.0E-67 T 11-10-2018 AMK58_19200 cd104832ce574b42a16bfddf22381c35 201 Pfam PF13417 Glutathione S-transferase, N-terminal domain 6 79 1.9E-16 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMK58_04430 09acdf5d824533bdc4cdb8c853082422 467 Pfam PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella 24 85 2.0E-8 T 11-10-2018 AMK58_04430 09acdf5d824533bdc4cdb8c853082422 467 SUPERFAMILY SSF69318 3 352 8.24E-33 T 11-10-2018 AMK58_04430 09acdf5d824533bdc4cdb8c853082422 467 Pfam PF07593 ASPIC and UnbV 394 461 2.9E-19 T 11-10-2018 IPR011519 ASPIC/UnbV AMK58_15345 e4e92534ebb5c433c2980afc2e53a365 446 Pfam PF13701 Transposase DDE domain group 1 12 445 5.8E-156 T 11-10-2018 IPR025668 Transposase DDE domain AMK58_15345 e4e92534ebb5c433c2980afc2e53a365 446 SUPERFAMILY SSF53098 147 395 2.12E-5 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMK58_17825 ce710d367f18e9256ffba80d1e68891b 301 SUPERFAMILY SSF54814 181 296 2.88E-38 T 11-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 AMK58_17825 ce710d367f18e9256ffba80d1e68891b 301 TIGRFAM TIGR00436 era: GTP-binding protein Era 8 279 1.7E-75 T 11-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_17825 ce710d367f18e9256ffba80d1e68891b 301 Gene3D G3DSA:3.30.300.20 185 298 6.1E-37 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta AMK58_17825 ce710d367f18e9256ffba80d1e68891b 301 Pfam PF07650 KH domain 208 284 1.1E-16 T 11-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_17825 ce710d367f18e9256ffba80d1e68891b 301 Hamap MF_00367 GTPase Era [era]. 5 296 32.897 T 11-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_17825 ce710d367f18e9256ffba80d1e68891b 301 Pfam PF01926 50S ribosome-binding GTPase 10 125 1.2E-23 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMK58_17825 ce710d367f18e9256ffba80d1e68891b 301 SUPERFAMILY SSF52540 10 211 5.08E-41 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_17825 ce710d367f18e9256ffba80d1e68891b 301 Gene3D G3DSA:3.40.50.300 3 183 1.4E-44 T 11-10-2018 AMK58_17825 ce710d367f18e9256ffba80d1e68891b 301 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 7 168 4.5E-24 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMK58_06740 be21249599fc35387d272fd2fdeba6e3 599 TIGRFAM TIGR01838 PHA_synth_I: poly(R)-hydroxyalkanoic acid synthase, class I 65 595 6.5E-246 T 11-10-2018 IPR010963 Poly(R)-hydroxyalkanoic acid synthase, class I GO:0005737|GO:0016746|GO:0042619 AMK58_06740 be21249599fc35387d272fd2fdeba6e3 599 Pfam PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus 108 280 2.2E-82 T 11-10-2018 IPR010941 Poly-beta-hydroxybutyrate polymerase, N-terminal domain GO:0042619 AMK58_06740 be21249599fc35387d272fd2fdeba6e3 599 Pfam PF00561 alpha/beta hydrolase fold 287 523 1.3E-12 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_06740 be21249599fc35387d272fd2fdeba6e3 599 SUPERFAMILY SSF53474 238 532 1.86E-44 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_21455 4f51f27db9730c391916c3c1f7a72e1d 339 Gene3D G3DSA:3.40.50.300 72 338 2.0E-72 T 11-10-2018 AMK58_21455 4f51f27db9730c391916c3c1f7a72e1d 339 SUPERFAMILY SSF52540 77 331 1.18E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_21455 4f51f27db9730c391916c3c1f7a72e1d 339 Pfam PF13614 AAA domain 77 254 1.5E-53 T 11-10-2018 IPR025669 AAA domain AMK58_14595 e4a8b44cc5b4d679d075ed937cda3dab 233 SUPERFAMILY SSF53167 3 154 2.36E-20 T 11-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 AMK58_14595 e4a8b44cc5b4d679d075ed937cda3dab 233 Pfam PF01048 Phosphorylase superfamily 30 153 1.3E-13 T 11-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AMK58_14595 e4a8b44cc5b4d679d075ed937cda3dab 233 Gene3D G3DSA:3.40.50.1580 4 163 1.8E-17 T 11-10-2018 AMK58_10255 fb0d2e65b18e04b86024d652ec236b5f 436 Gene3D G3DSA:3.40.640.10 7 290 5.5E-99 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_10255 fb0d2e65b18e04b86024d652ec236b5f 436 PIRSF PIRSF001434 1 434 2.2E-123 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMK58_10255 fb0d2e65b18e04b86024d652ec236b5f 436 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 202 216 - T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMK58_10255 fb0d2e65b18e04b86024d652ec236b5f 436 Gene3D G3DSA:3.90.1150.10 294 436 2.7E-45 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_10255 fb0d2e65b18e04b86024d652ec236b5f 436 SUPERFAMILY SSF53383 8 431 6.95E-121 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_10255 fb0d2e65b18e04b86024d652ec236b5f 436 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 8 430 8.2E-179 T 11-10-2018 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 AMK58_10255 fb0d2e65b18e04b86024d652ec236b5f 436 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 10 430 4.4E-132 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMK58_14725 d5eb63a0ec10730e6d6d57f2b76ebe73 64 Pfam PF04588 Hypoxia induced protein conserved region 8 57 1.1E-9 T 11-10-2018 IPR007667 Hypoxia induced protein, domain AMK58_14725 d5eb63a0ec10730e6d6d57f2b76ebe73 64 Pfam PF11137 Protein of unknown function (DUF2909) 7 61 1.5E-9 T 11-10-2018 IPR021313 Protein of unknown function DUF2909 AMK58_05710 5f117fb53153d2c9196bac72918c68f4 139 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 21 82 4.3E-11 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_05710 5f117fb53153d2c9196bac72918c68f4 139 SUPERFAMILY SSF46785 3 99 2.95E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_05710 5f117fb53153d2c9196bac72918c68f4 139 Gene3D G3DSA:1.10.10.10 1 122 1.8E-36 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_12370 c1678615b4f03d3dd32989079c30592e 403 Gene3D G3DSA:3.40.50.2000 175 355 3.0E-34 T 11-10-2018 AMK58_12370 c1678615b4f03d3dd32989079c30592e 403 SUPERFAMILY SSF53756 27 373 2.72E-43 T 11-10-2018 AMK58_12370 c1678615b4f03d3dd32989079c30592e 403 Pfam PF00534 Glycosyl transferases group 1 198 354 3.3E-25 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 AMK58_12370 c1678615b4f03d3dd32989079c30592e 403 Gene3D G3DSA:3.40.50.2000 49 174 3.0E-34 T 11-10-2018 AMK58_14480 a23eedfee5ed8d2dd484fc818891efa8 1263 Pfam PF13432 Tetratricopeptide repeat 815 877 3.2E-8 T 11-10-2018 AMK58_14480 a23eedfee5ed8d2dd484fc818891efa8 1263 Pfam PF13432 Tetratricopeptide repeat 886 946 2.0E-7 T 11-10-2018 AMK58_14480 a23eedfee5ed8d2dd484fc818891efa8 1263 SUPERFAMILY SSF53756 19 369 1.33E-23 T 11-10-2018 AMK58_14480 a23eedfee5ed8d2dd484fc818891efa8 1263 Pfam PF13692 Glycosyl transferases group 1 191 319 1.2E-8 T 11-10-2018 AMK58_14480 a23eedfee5ed8d2dd484fc818891efa8 1263 SUPERFAMILY SSF48452 765 952 7.86E-25 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_14480 a23eedfee5ed8d2dd484fc818891efa8 1263 SUPERFAMILY SSF53756 1000 1240 2.1E-24 T 11-10-2018 AMK58_14480 a23eedfee5ed8d2dd484fc818891efa8 1263 Gene3D G3DSA:3.40.50.2000 162 323 1.1E-17 T 11-10-2018 AMK58_14480 a23eedfee5ed8d2dd484fc818891efa8 1263 SMART SM00028 946 979 180.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14480 a23eedfee5ed8d2dd484fc818891efa8 1263 SMART SM00028 912 945 0.06 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14480 a23eedfee5ed8d2dd484fc818891efa8 1263 SMART SM00028 843 876 0.0047 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14480 a23eedfee5ed8d2dd484fc818891efa8 1263 SMART SM00028 809 842 77.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14480 a23eedfee5ed8d2dd484fc818891efa8 1263 Gene3D G3DSA:3.40.50.2000 24 161 1.1E-17 T 11-10-2018 AMK58_14480 a23eedfee5ed8d2dd484fc818891efa8 1263 Gene3D G3DSA:3.40.50.2000 1126 1258 6.1E-6 T 11-10-2018 AMK58_14480 a23eedfee5ed8d2dd484fc818891efa8 1263 Gene3D G3DSA:1.25.40.10 680 979 8.6E-36 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_14480 a23eedfee5ed8d2dd484fc818891efa8 1263 Pfam PF04724 Glycosyltransferase family 17 478 684 1.6E-28 T 11-10-2018 IPR006813 Glycosyl transferase, family 17 GO:0003830|GO:0006487|GO:0016020 KEGG: 00510+2.4.1.144|MetaCyc: PWY-7426|Reactome: R-HSA-975574 AMK58_01440 53ea1ce751fd7299c38c2def7d5c795a 298 SUPERFAMILY SSF46785 2 85 3.38E-24 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_01440 53ea1ce751fd7299c38c2def7d5c795a 298 Gene3D G3DSA:3.40.190.10 103 290 1.7E-60 T 11-10-2018 AMK58_01440 53ea1ce751fd7299c38c2def7d5c795a 298 Gene3D G3DSA:3.40.190.10 163 263 1.7E-60 T 11-10-2018 AMK58_01440 53ea1ce751fd7299c38c2def7d5c795a 298 SUPERFAMILY SSF53850 92 296 1.99E-39 T 11-10-2018 AMK58_01440 53ea1ce751fd7299c38c2def7d5c795a 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 1.4E-21 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_01440 53ea1ce751fd7299c38c2def7d5c795a 298 Pfam PF03466 LysR substrate binding domain 90 294 5.2E-41 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_01440 53ea1ce751fd7299c38c2def7d5c795a 298 Gene3D G3DSA:1.10.10.10 7 93 8.8E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_01440 53ea1ce751fd7299c38c2def7d5c795a 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 6.2E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_01440 53ea1ce751fd7299c38c2def7d5c795a 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 6.2E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_01440 53ea1ce751fd7299c38c2def7d5c795a 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 6.2E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_28545 201aebb7ae4fc39cbd719e4590edb536 307 SUPERFAMILY SSF54782 222 301 1.03E-20 T 11-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMK58_28545 201aebb7ae4fc39cbd719e4590edb536 307 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 3 299 36.901 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMK58_28545 201aebb7ae4fc39cbd719e4590edb536 307 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 4 297 5.7E-105 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMK58_28545 201aebb7ae4fc39cbd719e4590edb536 307 Gene3D G3DSA:3.40.190.10 105 204 1.1E-82 T 11-10-2018 AMK58_28545 201aebb7ae4fc39cbd719e4590edb536 307 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 229 297 5.9E-16 T 11-10-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMK58_28545 201aebb7ae4fc39cbd719e4590edb536 307 Gene3D G3DSA:3.30.160.40 224 306 1.7E-21 T 11-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMK58_28545 201aebb7ae4fc39cbd719e4590edb536 307 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 4 214 2.7E-74 T 11-10-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMK58_28545 201aebb7ae4fc39cbd719e4590edb536 307 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 233 249 - T 11-10-2018 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMK58_28545 201aebb7ae4fc39cbd719e4590edb536 307 SUPERFAMILY SSF53850 3 220 3.64E-77 T 11-10-2018 AMK58_28545 201aebb7ae4fc39cbd719e4590edb536 307 PRINTS PR00151 Porphobilinogen deaminase signature 47 67 3.3E-43 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMK58_28545 201aebb7ae4fc39cbd719e4590edb536 307 PRINTS PR00151 Porphobilinogen deaminase signature 145 162 3.3E-43 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMK58_28545 201aebb7ae4fc39cbd719e4590edb536 307 PRINTS PR00151 Porphobilinogen deaminase signature 126 143 3.3E-43 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMK58_28545 201aebb7ae4fc39cbd719e4590edb536 307 PRINTS PR00151 Porphobilinogen deaminase signature 232 249 3.3E-43 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMK58_28545 201aebb7ae4fc39cbd719e4590edb536 307 PRINTS PR00151 Porphobilinogen deaminase signature 78 97 3.3E-43 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMK58_28545 201aebb7ae4fc39cbd719e4590edb536 307 Gene3D G3DSA:3.40.190.10 4 212 1.1E-82 T 11-10-2018 AMK58_28545 201aebb7ae4fc39cbd719e4590edb536 307 PIRSF PIRSF001438 1 306 6.4E-113 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMK58_24705 811b6bced228c0779caa4692da82bc17 1035 Gene3D G3DSA:2.40.40.20 861 1024 1.2E-22 T 11-10-2018 AMK58_24705 811b6bced228c0779caa4692da82bc17 1035 Pfam PF00384 Molybdopterin oxidoreductase 257 694 4.6E-15 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_24705 811b6bced228c0779caa4692da82bc17 1035 SUPERFAMILY SSF53706 72 902 9.79E-110 T 11-10-2018 AMK58_24705 811b6bced228c0779caa4692da82bc17 1035 Gene3D G3DSA:3.40.50.740 71 742 2.5E-72 T 11-10-2018 AMK58_24705 811b6bced228c0779caa4692da82bc17 1035 SMART SM00926 70 154 2.4E-11 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_24705 811b6bced228c0779caa4692da82bc17 1035 Pfam PF01568 Molydopterin dinucleotide binding domain 901 1006 6.2E-14 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 AMK58_24705 811b6bced228c0779caa4692da82bc17 1035 SUPERFAMILY SSF50692 883 1025 2.71E-26 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily AMK58_18000 a313a0abd3e39887fa3e4ce5704f8e67 279 Hamap MF_00934 Ribosomal RNA large subunit methyltransferase J [rlmJ]. 1 265 41.106 T 11-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 AMK58_18000 a313a0abd3e39887fa3e4ce5704f8e67 279 Gene3D G3DSA:3.40.50.150 1 279 9.1E-108 T 11-10-2018 AMK58_18000 a313a0abd3e39887fa3e4ce5704f8e67 279 SUPERFAMILY SSF53335 8 274 1.43E-92 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_18000 a313a0abd3e39887fa3e4ce5704f8e67 279 Pfam PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ 34 276 2.6E-94 T 11-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 AMK58_00880 bdde2b695844a4c1c7b18f63551c46b2 634 Gene3D G3DSA:1.25.40.10 3 187 3.9E-24 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_00880 bdde2b695844a4c1c7b18f63551c46b2 634 SMART SM00028 38 71 270.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_00880 bdde2b695844a4c1c7b18f63551c46b2 634 SMART SM00028 144 177 57.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_00880 bdde2b695844a4c1c7b18f63551c46b2 634 SMART SM00028 274 307 12.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_00880 bdde2b695844a4c1c7b18f63551c46b2 634 SMART SM00028 206 239 35.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_00880 bdde2b695844a4c1c7b18f63551c46b2 634 SMART SM00028 240 273 0.44 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_00880 bdde2b695844a4c1c7b18f63551c46b2 634 SMART SM00028 76 109 14.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_00880 bdde2b695844a4c1c7b18f63551c46b2 634 SMART SM00028 110 143 160.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_00880 bdde2b695844a4c1c7b18f63551c46b2 634 SUPERFAMILY SSF48452 8 178 2.99E-22 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_00880 bdde2b695844a4c1c7b18f63551c46b2 634 Gene3D G3DSA:3.40.50.2000 487 609 7.1E-8 T 11-10-2018 AMK58_00880 bdde2b695844a4c1c7b18f63551c46b2 634 SUPERFAMILY SSF53756 361 615 1.73E-16 T 11-10-2018 AMK58_00880 bdde2b695844a4c1c7b18f63551c46b2 634 SUPERFAMILY SSF48452 197 328 2.92E-21 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_00880 bdde2b695844a4c1c7b18f63551c46b2 634 Gene3D G3DSA:1.25.40.10 188 339 2.2E-24 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_00880 bdde2b695844a4c1c7b18f63551c46b2 634 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 478 582 1.1E-4 T 11-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 AMK58_00880 bdde2b695844a4c1c7b18f63551c46b2 634 Pfam PF13432 Tetratricopeptide repeat 13 67 0.0039 T 11-10-2018 AMK58_00880 bdde2b695844a4c1c7b18f63551c46b2 634 Pfam PF13432 Tetratricopeptide repeat 288 333 0.013 T 11-10-2018 AMK58_00880 bdde2b695844a4c1c7b18f63551c46b2 634 Pfam PF13432 Tetratricopeptide repeat 219 273 2.2E-4 T 11-10-2018 AMK58_16885 a00c196248453b730c039948e7086099 317 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 41 288 1.7E-73 T 11-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 AMK58_16885 a00c196248453b730c039948e7086099 317 Pfam PF02355 Protein export membrane protein 121 297 1.6E-61 T 11-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial AMK58_16885 a00c196248453b730c039948e7086099 317 Pfam PF07549 SecD/SecF GG Motif 36 57 5.7E-6 T 11-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site AMK58_16885 a00c196248453b730c039948e7086099 317 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 13 299 26.447 T 11-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 AMK58_16885 a00c196248453b730c039948e7086099 317 Gene3D G3DSA:1.20.1640.10 105 305 6.2E-16 T 11-10-2018 AMK58_16885 a00c196248453b730c039948e7086099 317 SUPERFAMILY SSF82866 77 299 5.1E-45 T 11-10-2018 AMK58_16885 a00c196248453b730c039948e7086099 317 PRINTS PR01755 Bacterial translocase SecF protein signature 204 222 6.4E-30 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMK58_16885 a00c196248453b730c039948e7086099 317 PRINTS PR01755 Bacterial translocase SecF protein signature 236 251 6.4E-30 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMK58_16885 a00c196248453b730c039948e7086099 317 PRINTS PR01755 Bacterial translocase SecF protein signature 40 55 6.4E-30 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMK58_16885 a00c196248453b730c039948e7086099 317 PRINTS PR01755 Bacterial translocase SecF protein signature 156 170 6.4E-30 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMK58_16885 a00c196248453b730c039948e7086099 317 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 102 285 2.8E-48 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMK58_27905 359f255af6c25654e0d2c1e62a575d1e 261 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 158 235 2.4E-7 T 11-10-2018 AMK58_27905 359f255af6c25654e0d2c1e62a575d1e 261 SUPERFAMILY SSF53800 24 128 4.25E-6 T 11-10-2018 AMK58_27905 359f255af6c25654e0d2c1e62a575d1e 261 Gene3D G3DSA:3.40.50.1400 9 130 2.9E-7 T 11-10-2018 AMK58_27905 359f255af6c25654e0d2c1e62a575d1e 261 SUPERFAMILY SSF52833 158 253 2.46E-20 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_27905 359f255af6c25654e0d2c1e62a575d1e 261 Gene3D G3DSA:3.40.30.10 155 257 1.1E-23 T 11-10-2018 AMK58_15525 0d20f01934b9d7d8f73bc45af386b920 84 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 15 68 8.9E-22 T 11-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AMK58_15525 0d20f01934b9d7d8f73bc45af386b920 84 Pfam PF02609 Exonuclease VII small subunit 16 66 5.8E-19 T 11-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AMK58_15525 0d20f01934b9d7d8f73bc45af386b920 84 Gene3D G3DSA:1.10.287.1040 11 82 6.3E-20 T 11-10-2018 IPR037004 Exonuclease VII, small subunit superfamily GO:0006308|GO:0008855|GO:0009318 AMK58_15525 0d20f01934b9d7d8f73bc45af386b920 84 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 15 55 3.0E-11 T 11-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AMK58_15525 0d20f01934b9d7d8f73bc45af386b920 84 SUPERFAMILY SSF116842 9 74 1.31E-18 T 11-10-2018 AMK58_15525 0d20f01934b9d7d8f73bc45af386b920 84 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 15 75 14.974 T 11-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AMK58_09250 0e7805523dff2e7afcb4ff55eeda3339 450 SUPERFAMILY SSF69304 171 447 5.62E-58 T 11-10-2018 AMK58_09250 0e7805523dff2e7afcb4ff55eeda3339 450 SUPERFAMILY SSF52964 39 174 7.85E-44 T 11-10-2018 AMK58_09250 0e7805523dff2e7afcb4ff55eeda3339 450 Gene3D G3DSA:2.120.10.30 178 449 1.9E-74 T 11-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like AMK58_09250 0e7805523dff2e7afcb4ff55eeda3339 450 Hamap MF_00671 Tol-Pal system protein TolB [tolB]. 15 445 50.951 T 11-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 AMK58_09250 0e7805523dff2e7afcb4ff55eeda3339 450 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 28 446 2.5E-143 T 11-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 AMK58_09250 0e7805523dff2e7afcb4ff55eeda3339 450 Gene3D G3DSA:3.40.50.10070 30 177 4.6E-43 T 11-10-2018 IPR036752 TolB, N-terminal domain superfamily GO:0015031|GO:0042597 AMK58_09250 0e7805523dff2e7afcb4ff55eeda3339 450 Pfam PF07676 WD40-like Beta Propeller Repeat 295 330 2.8E-12 T 11-10-2018 IPR011659 WD40-like Beta Propeller AMK58_09250 0e7805523dff2e7afcb4ff55eeda3339 450 Pfam PF07676 WD40-like Beta Propeller Repeat 259 285 0.0021 T 11-10-2018 IPR011659 WD40-like Beta Propeller AMK58_09250 0e7805523dff2e7afcb4ff55eeda3339 450 Pfam PF07676 WD40-like Beta Propeller Repeat 382 415 0.0073 T 11-10-2018 IPR011659 WD40-like Beta Propeller AMK58_09250 0e7805523dff2e7afcb4ff55eeda3339 450 Pfam PF07676 WD40-like Beta Propeller Repeat 339 370 4.0E-7 T 11-10-2018 IPR011659 WD40-like Beta Propeller AMK58_09250 0e7805523dff2e7afcb4ff55eeda3339 450 Pfam PF04052 TolB amino-terminal domain 34 141 3.3E-36 T 11-10-2018 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 AMK58_02670 c2a6c9e350c9ecea2d7c9809d051cf88 129 PIRSF PIRSF000178 1 126 3.9E-38 T 11-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMK58_02670 c2a6c9e350c9ecea2d7c9809d051cf88 129 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 7 124 1.2E-39 T 11-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMK58_02670 c2a6c9e350c9ecea2d7c9809d051cf88 129 ProSitePatterns PS01001 Succinate dehydrogenase cytochrome b subunit signature 2. 82 95 - T 11-10-2018 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMK58_02670 c2a6c9e350c9ecea2d7c9809d051cf88 129 Gene3D G3DSA:1.20.1300.10 2 129 2.5E-42 T 11-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMK58_02670 c2a6c9e350c9ecea2d7c9809d051cf88 129 SUPERFAMILY SSF81343 6 123 7.36E-35 T 11-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMK58_02670 c2a6c9e350c9ecea2d7c9809d051cf88 129 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 6 120 3.7E-32 T 11-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMK58_22870 85cad2b43f0057271ad104ab87b6fac3 552 SUPERFAMILY SSF55486 40 192 1.0E-31 T 11-10-2018 AMK58_22870 85cad2b43f0057271ad104ab87b6fac3 552 SUPERFAMILY SSF51120 335 506 8.37E-11 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_22870 85cad2b43f0057271ad104ab87b6fac3 552 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 294 312 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_22870 85cad2b43f0057271ad104ab87b6fac3 552 SMART SM00235 32 194 1.3E-5 T 11-10-2018 IPR006026 Peptidase, metallopeptidase GO:0006508|GO:0008237|GO:0008270 AMK58_22870 85cad2b43f0057271ad104ab87b6fac3 552 SUPERFAMILY SSF51120 198 359 3.92E-19 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_22870 85cad2b43f0057271ad104ab87b6fac3 552 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 285 303 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_22870 85cad2b43f0057271ad104ab87b6fac3 552 Pfam PF13583 Metallo-peptidase family M12B Reprolysin-like 125 173 3.2E-5 T 11-10-2018 AMK58_22870 85cad2b43f0057271ad104ab87b6fac3 552 Gene3D G3DSA:3.40.390.10 15 195 2.4E-39 T 11-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 AMK58_22870 85cad2b43f0057271ad104ab87b6fac3 552 Gene3D G3DSA:2.150.10.10 263 392 1.0E-14 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_22870 85cad2b43f0057271ad104ab87b6fac3 552 Gene3D G3DSA:2.150.10.10 402 536 1.0E-10 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_22870 85cad2b43f0057271ad104ab87b6fac3 552 PRINTS PR00313 NodO calcium binding signature 295 306 1.5E-9 T 11-10-2018 AMK58_22870 85cad2b43f0057271ad104ab87b6fac3 552 PRINTS PR00313 NodO calcium binding signature 443 451 1.5E-9 T 11-10-2018 AMK58_22870 85cad2b43f0057271ad104ab87b6fac3 552 PRINTS PR00313 NodO calcium binding signature 452 461 1.5E-9 T 11-10-2018 AMK58_22870 85cad2b43f0057271ad104ab87b6fac3 552 PRINTS PR00313 NodO calcium binding signature 434 442 1.5E-9 T 11-10-2018 AMK58_22545 cddd2f99d07f23b33b699f2e43e7bd59 400 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 283 339 2.2E-6 T 11-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 AMK58_22545 cddd2f99d07f23b33b699f2e43e7bd59 400 Gene3D G3DSA:1.25.40.10 6 95 1.2E-12 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_22545 cddd2f99d07f23b33b699f2e43e7bd59 400 SUPERFAMILY SSF48452 11 93 1.49E-12 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_22545 cddd2f99d07f23b33b699f2e43e7bd59 400 SUPERFAMILY SSF53756 132 372 1.16E-18 T 11-10-2018 AMK58_22545 cddd2f99d07f23b33b699f2e43e7bd59 400 Gene3D G3DSA:3.40.50.2000 262 359 1.3E-9 T 11-10-2018 AMK58_08585 6e2a22287d310c81617e8e7dfe96d084 387 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 42 117 7.4E-5 T 11-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 AMK58_08585 6e2a22287d310c81617e8e7dfe96d084 387 Gene3D G3DSA:3.20.20.70 119 358 3.9E-25 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_08585 6e2a22287d310c81617e8e7dfe96d084 387 SUPERFAMILY SSF51690 126 381 1.38E-29 T 11-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 AMK58_08585 6e2a22287d310c81617e8e7dfe96d084 387 SUPERFAMILY SSF54675 24 117 2.49E-8 T 11-10-2018 AMK58_14335 8da6a6b45faaa877fa017bfd8619a2ae 629 SUPERFAMILY SSF52540 10 175 3.41E-37 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_14335 8da6a6b45faaa877fa017bfd8619a2ae 629 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 33 51 2.3E-7 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMK58_14335 8da6a6b45faaa877fa017bfd8619a2ae 629 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 12 32 2.3E-7 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMK58_14335 8da6a6b45faaa877fa017bfd8619a2ae 629 Gene3D G3DSA:3.40.50.300 9 187 2.6E-44 T 11-10-2018 AMK58_14335 8da6a6b45faaa877fa017bfd8619a2ae 629 Pfam PF02421 Ferrous iron transport protein B 11 171 4.0E-55 T 11-10-2018 IPR030389 FeoB-type guanine nucleotide-binding (G) domain GO:0005525 AMK58_14335 8da6a6b45faaa877fa017bfd8619a2ae 629 Pfam PF07664 Ferrous iron transport protein B C terminus 411 463 5.4E-17 T 11-10-2018 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 AMK58_14335 8da6a6b45faaa877fa017bfd8619a2ae 629 Pfam PF07670 Nucleoside recognition 300 387 3.6E-11 T 11-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 AMK58_14335 8da6a6b45faaa877fa017bfd8619a2ae 629 Pfam PF07670 Nucleoside recognition 468 600 6.2E-26 T 11-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 AMK58_15075 eac4201d8538b37c1a04a83b97a0ae8a 342 PIRSF PIRSF002825 1 338 4.0E-62 T 11-10-2018 IPR026045 Ferric binding protein AMK58_15075 eac4201d8538b37c1a04a83b97a0ae8a 342 SUPERFAMILY SSF53850 40 327 4.43E-64 T 11-10-2018 AMK58_15075 eac4201d8538b37c1a04a83b97a0ae8a 342 Gene3D G3DSA:3.40.190.10 146 322 5.7E-70 T 11-10-2018 AMK58_15075 eac4201d8538b37c1a04a83b97a0ae8a 342 Gene3D G3DSA:3.40.190.10 45 309 5.7E-70 T 11-10-2018 AMK58_15075 eac4201d8538b37c1a04a83b97a0ae8a 342 Pfam PF13531 Bacterial extracellular solute-binding protein 44 296 6.1E-27 T 11-10-2018 AMK58_08765 1b48910b488ecb9fe1b44ad49a13fa81 683 SUPERFAMILY SSF50692 560 682 1.31E-29 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily AMK58_08765 1b48910b488ecb9fe1b44ad49a13fa81 683 Gene3D G3DSA:3.40.50.740 73 476 5.1E-117 T 11-10-2018 AMK58_08765 1b48910b488ecb9fe1b44ad49a13fa81 683 Gene3D G3DSA:2.20.25.90 3 64 1.2E-6 T 11-10-2018 AMK58_08765 1b48910b488ecb9fe1b44ad49a13fa81 683 Gene3D G3DSA:3.40.228.10 139 353 5.1E-117 T 11-10-2018 AMK58_08765 1b48910b488ecb9fe1b44ad49a13fa81 683 Pfam PF00384 Molybdopterin oxidoreductase 62 471 7.5E-51 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_08765 1b48910b488ecb9fe1b44ad49a13fa81 683 Gene3D G3DSA:3.30.2070.10 431 512 5.1E-117 T 11-10-2018 AMK58_08765 1b48910b488ecb9fe1b44ad49a13fa81 683 Gene3D G3DSA:2.40.40.20 547 683 5.9E-22 T 11-10-2018 AMK58_08765 1b48910b488ecb9fe1b44ad49a13fa81 683 Pfam PF01568 Molydopterin dinucleotide binding domain 567 676 2.3E-18 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 AMK58_08765 1b48910b488ecb9fe1b44ad49a13fa81 683 SUPERFAMILY SSF53706 7 567 1.31E-141 T 11-10-2018 AMK58_08765 1b48910b488ecb9fe1b44ad49a13fa81 683 SMART SM00926 3 59 7.6E-10 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_08765 1b48910b488ecb9fe1b44ad49a13fa81 683 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 7 58 3.4E-6 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_21885 7895b64b1c03ce1df4e3c09da7ac3fe7 179 Gene3D G3DSA:3.10.180.10 4 145 8.8E-36 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMK58_21885 7895b64b1c03ce1df4e3c09da7ac3fe7 179 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 131 3.6E-33 T 11-10-2018 AMK58_21885 7895b64b1c03ce1df4e3c09da7ac3fe7 179 SUPERFAMILY SSF54593 7 146 5.07E-19 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMK58_23935 d5a192b939fa90aad76c68f32428645b 255 Gene3D G3DSA:3.40.50.300 1 251 2.7E-62 T 11-10-2018 AMK58_23935 d5a192b939fa90aad76c68f32428645b 255 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 230 252 6.5E-10 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AMK58_23935 d5a192b939fa90aad76c68f32428645b 255 SUPERFAMILY SSF52540 4 251 1.41E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_23935 d5a192b939fa90aad76c68f32428645b 255 SMART SM00382 29 229 4.7E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_23935 d5a192b939fa90aad76c68f32428645b 255 Pfam PF00005 ABC transporter 21 181 4.1E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_20395 40b5dc4ad4c127c1a09294b169f9ad2f 61 Pfam PF03884 DNA gyrase inhibitor YacG 11 55 4.1E-13 T 11-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 AMK58_20395 40b5dc4ad4c127c1a09294b169f9ad2f 61 Gene3D G3DSA:3.30.50.10 4 61 2.4E-15 T 11-10-2018 IPR013088 Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 Reactome: R-HSA-383280 AMK58_20395 40b5dc4ad4c127c1a09294b169f9ad2f 61 SUPERFAMILY SSF57716 9 59 9.84E-14 T 11-10-2018 AMK58_20395 40b5dc4ad4c127c1a09294b169f9ad2f 61 Hamap MF_00649 DNA gyrase inhibitor YacG [yacG]. 6 59 15.39 T 11-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 AMK58_16520 fceff35b2fa66551902c7e486d698090 279 Gene3D G3DSA:1.10.3720.10 5 271 1.7E-37 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_16520 fceff35b2fa66551902c7e486d698090 279 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 88 260 9.1E-13 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_16520 fceff35b2fa66551902c7e486d698090 279 SUPERFAMILY SSF161098 8 261 4.39E-43 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_02610 7301e3ea51500d57a483f49488942493 922 Gene3D G3DSA:3.40.50.300 725 905 1.2E-21 T 11-10-2018 AMK58_02610 7301e3ea51500d57a483f49488942493 922 Gene3D G3DSA:3.40.50.300 218 485 9.5E-28 T 11-10-2018 AMK58_02610 7301e3ea51500d57a483f49488942493 922 SMART SM00491 768 891 2.1E-6 T 11-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 AMK58_02610 7301e3ea51500d57a483f49488942493 922 SUPERFAMILY SSF52540 243 885 9.31E-14 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_02610 7301e3ea51500d57a483f49488942493 922 Pfam PF13307 Helicase C-terminal domain 749 887 1.9E-14 T 11-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 AMK58_25340 8c985399316cce6236987d20de026e5b 58 Pfam PF06796 Periplasmic nitrate reductase protein NapE 8 52 1.7E-15 T 11-10-2018 IPR010649 Nitrate/trimethylamine N-oxide reductase NapE/TorE AMK58_19960 79bc0e47737d9662413d2fa3690322ae 142 SUPERFAMILY SSF46785 5 132 3.35E-36 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_19960 79bc0e47737d9662413d2fa3690322ae 142 Gene3D G3DSA:1.10.10.10 2 83 1.3E-30 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_19960 79bc0e47737d9662413d2fa3690322ae 142 Pfam PF01475 Ferric uptake regulator family 11 129 8.9E-36 T 11-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 AMK58_19960 79bc0e47737d9662413d2fa3690322ae 142 Gene3D G3DSA:3.30.1490.190 86 135 1.1E-13 T 11-10-2018 AMK58_08865 e7683513826d089de7e2a06342aee493 350 SUPERFAMILY SSF52172 13 133 7.68E-18 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_08865 e7683513826d089de7e2a06342aee493 350 SMART SM00448 9 125 1.3E-7 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_08865 e7683513826d089de7e2a06342aee493 350 Gene3D G3DSA:3.40.50.2300 9 136 2.7E-18 T 11-10-2018 AMK58_08865 e7683513826d089de7e2a06342aee493 350 Pfam PF00072 Response regulator receiver domain 13 125 1.1E-12 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_26505 26fd36417b5e259da683eccabe80eb7c 495 Pfam PF01515 Phosphate acetyl/butaryl transferase 254 469 1.1E-47 T 11-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AMK58_26505 26fd36417b5e259da683eccabe80eb7c 495 Gene3D G3DSA:3.40.718.10 177 473 3.4E-98 T 11-10-2018 AMK58_26505 26fd36417b5e259da683eccabe80eb7c 495 SUPERFAMILY SSF54637 23 162 5.08E-39 T 11-10-2018 IPR029069 HotDog domain superfamily AMK58_26505 26fd36417b5e259da683eccabe80eb7c 495 SUPERFAMILY SSF53659 190 472 1.69E-70 T 11-10-2018 AMK58_26505 26fd36417b5e259da683eccabe80eb7c 495 Gene3D G3DSA:3.10.129.10 20 174 8.5E-44 T 11-10-2018 AMK58_26505 26fd36417b5e259da683eccabe80eb7c 495 Pfam PF01575 MaoC like domain 37 133 4.6E-18 T 11-10-2018 IPR002539 MaoC-like dehydratase domain AMK58_24585 5ab58c7b8d9aca87eb2606bacd73a3da 406 Pfam PF13229 Right handed beta helix region 253 364 7.3E-10 T 11-10-2018 IPR039448 Right handed beta helix domain AMK58_24585 5ab58c7b8d9aca87eb2606bacd73a3da 406 Pfam PF13229 Right handed beta helix region 113 241 3.7E-9 T 11-10-2018 IPR039448 Right handed beta helix domain AMK58_24585 5ab58c7b8d9aca87eb2606bacd73a3da 406 Gene3D G3DSA:2.160.20.10 33 398 6.2E-32 T 11-10-2018 IPR012334 Pectin lyase fold AMK58_24585 5ab58c7b8d9aca87eb2606bacd73a3da 406 SUPERFAMILY SSF51126 30 321 5.5E-36 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor AMK58_24585 5ab58c7b8d9aca87eb2606bacd73a3da 406 SMART SM00710 169 191 1500.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_24585 5ab58c7b8d9aca87eb2606bacd73a3da 406 SMART SM00710 331 354 1800.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_24585 5ab58c7b8d9aca87eb2606bacd73a3da 406 SMART SM00710 256 279 550.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_24585 5ab58c7b8d9aca87eb2606bacd73a3da 406 SMART SM00710 121 143 5500.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_24585 5ab58c7b8d9aca87eb2606bacd73a3da 406 SMART SM00710 145 167 0.67 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_24585 5ab58c7b8d9aca87eb2606bacd73a3da 406 SMART SM00710 194 218 8500.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_08435 2f3ca1b03d14357014b2069ef73698e7 869 Gene3D G3DSA:3.90.550.10 411 632 5.3E-63 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_08435 2f3ca1b03d14357014b2069ef73698e7 869 Gene3D G3DSA:3.20.20.80 35 300 6.4E-16 T 11-10-2018 AMK58_08435 2f3ca1b03d14357014b2069ef73698e7 869 SUPERFAMILY SSF53448 412 675 8.63E-54 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_08435 2f3ca1b03d14357014b2069ef73698e7 869 SUPERFAMILY SSF51445 38 297 2.05E-46 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily AMK58_08435 2f3ca1b03d14357014b2069ef73698e7 869 Pfam PF13641 Glycosyltransferase like family 2 419 648 6.4E-32 T 11-10-2018 AMK58_14600 6a095bd153caf270932a662ee6882877 375 Gene3D G3DSA:3.20.20.70 27 289 2.2E-31 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_14600 6a095bd153caf270932a662ee6882877 375 Pfam PF11946 Domain of unknown function (DUF3463) 195 327 2.1E-60 T 11-10-2018 IPR022563 Domain of unknown function DUF3463 AMK58_14600 6a095bd153caf270932a662ee6882877 375 SMART SM00729 28 227 0.0053 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMK58_14600 6a095bd153caf270932a662ee6882877 375 SUPERFAMILY SSF102114 23 307 7.72E-53 T 11-10-2018 AMK58_14600 6a095bd153caf270932a662ee6882877 375 TIGRFAM TIGR03470 HpnH: hopanoid biosynthesis associated radical SAM protein HpnH 1 318 4.7E-167 T 11-10-2018 IPR017833 Hopanoid biosynthesis associated radical SAM protein HpnH AMK58_14600 6a095bd153caf270932a662ee6882877 375 Pfam PF04055 Radical SAM superfamily 33 185 1.2E-14 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMK58_10235 cfd260f9319a00d591d42c84d682c78b 135 Gene3D G3DSA:1.10.8.930 1 130 8.0E-45 T 11-10-2018 IPR038301 AraC-like superfamily AMK58_10235 cfd260f9319a00d591d42c84d682c78b 135 Pfam PF07323 Protein of unknown function (DUF1465) 4 130 1.1E-31 T 11-10-2018 IPR010848 Protein of unknown function DUF1465 AMK58_17160 d1848fdb5392ef5e52530015a16f68e0 126 PRINTS PR00604 Class IA and IB cytochrome C signature 99 109 3.7E-17 T 11-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_17160 d1848fdb5392ef5e52530015a16f68e0 126 PRINTS PR00604 Class IA and IB cytochrome C signature 47 62 3.7E-17 T 11-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_17160 d1848fdb5392ef5e52530015a16f68e0 126 PRINTS PR00604 Class IA and IB cytochrome C signature 80 96 3.7E-17 T 11-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_17160 d1848fdb5392ef5e52530015a16f68e0 126 PRINTS PR00604 Class IA and IB cytochrome C signature 63 73 3.7E-17 T 11-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_17160 d1848fdb5392ef5e52530015a16f68e0 126 PRINTS PR00604 Class IA and IB cytochrome C signature 116 124 3.7E-17 T 11-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_17160 d1848fdb5392ef5e52530015a16f68e0 126 PRINTS PR00604 Class IA and IB cytochrome C signature 35 42 3.7E-17 T 11-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_17160 d1848fdb5392ef5e52530015a16f68e0 126 Pfam PF00034 Cytochrome c 26 125 6.4E-8 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_17160 d1848fdb5392ef5e52530015a16f68e0 126 SUPERFAMILY SSF46626 23 124 6.35E-32 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_17160 d1848fdb5392ef5e52530015a16f68e0 126 Gene3D G3DSA:1.10.760.10 11 125 3.7E-40 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_06200 b91f06b747f70171bdc1abe1e532ac27 82 Pfam PF07330 Protein of unknown function (DUF1467) 1 78 9.3E-27 T 11-10-2018 IPR009935 Protein of unknown function DUF1467 AMK58_02350 128d26a8a97f50439729a4baa97c004d 156 Pfam PF13470 PIN domain 18 132 5.3E-18 T 11-10-2018 IPR002716 PIN domain AMK58_02350 128d26a8a97f50439729a4baa97c004d 156 TIGRFAM TIGR00305 TIGR00305: putative toxin-antitoxin system toxin component, PIN family 18 136 1.7E-14 T 11-10-2018 IPR002850 PIN family, putative toxin-antitoxin system toxin component AMK58_02350 128d26a8a97f50439729a4baa97c004d 156 SUPERFAMILY SSF88723 18 140 4.77E-14 T 11-10-2018 IPR029060 PIN-like domain superfamily AMK58_02350 128d26a8a97f50439729a4baa97c004d 156 SMART SM00670 17 136 0.0064 T 11-10-2018 IPR002716 PIN domain AMK58_06995 6741b905d9425f1c4fce953aaf9d303c 149 SMART SM00116 13 65 3.1E-8 T 11-10-2018 IPR000644 CBS domain AMK58_06995 6741b905d9425f1c4fce953aaf9d303c 149 SMART SM00116 83 130 1.3E-9 T 11-10-2018 IPR000644 CBS domain AMK58_06995 6741b905d9425f1c4fce953aaf9d303c 149 SUPERFAMILY SSF54631 1 130 4.55E-30 T 11-10-2018 AMK58_06995 6741b905d9425f1c4fce953aaf9d303c 149 Pfam PF00571 CBS domain 79 128 2.8E-12 T 11-10-2018 IPR000644 CBS domain AMK58_06995 6741b905d9425f1c4fce953aaf9d303c 149 Pfam PF00571 CBS domain 4 65 7.1E-10 T 11-10-2018 IPR000644 CBS domain AMK58_06995 6741b905d9425f1c4fce953aaf9d303c 149 Gene3D G3DSA:3.10.580.10 1 142 9.5E-37 T 11-10-2018 AMK58_04995 5043270d77809a29f20a98b9c24c1c76 134 Pfam PF00072 Response regulator receiver domain 13 127 1.3E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_04995 5043270d77809a29f20a98b9c24c1c76 134 SMART SM00448 11 127 1.5E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_04995 5043270d77809a29f20a98b9c24c1c76 134 SUPERFAMILY SSF52172 10 132 1.57E-32 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_04995 5043270d77809a29f20a98b9c24c1c76 134 Gene3D G3DSA:3.40.50.2300 7 134 8.5E-31 T 11-10-2018 AMK58_24735 589f1ed40706739a5e23de7be7ef01ec 266 Pfam PF05013 N-formylglutamate amidohydrolase 12 231 3.5E-68 T 11-10-2018 IPR007709 N-formylglutamate amidohydrolase AMK58_24735 589f1ed40706739a5e23de7be7ef01ec 266 Gene3D G3DSA:3.40.630.40 2 266 4.3E-73 T 11-10-2018 AMK58_24735 589f1ed40706739a5e23de7be7ef01ec 266 SUPERFAMILY SSF53187 3 263 2.32E-81 T 11-10-2018 AMK58_24735 589f1ed40706739a5e23de7be7ef01ec 266 TIGRFAM TIGR02017 hutG_amidohyd: N-formylglutamate deformylase 5 264 1.6E-108 T 11-10-2018 IPR010247 N-formylglutamate deformylase AMK58_05105 0c3e5a159ea0c8e14cb7225c80c49071 237 Pfam PF04654 Protein of unknown function, DUF599 11 218 4.9E-57 T 11-10-2018 IPR006747 Protein of unknown function DUF599 AMK58_25310 d0018249ae046509dd39a8f44ac73d94 216 Gene3D G3DSA:2.60.40.4070 97 182 3.4E-20 T 11-10-2018 AMK58_25310 d0018249ae046509dd39a8f44ac73d94 216 Pfam PF03963 Flagellar hook capping protein - N-terminal region 3 71 6.2E-22 T 11-10-2018 IPR005648 Flagellar hook capping protein AMK58_25310 d0018249ae046509dd39a8f44ac73d94 216 Pfam PF13860 FlgD Ig-like domain 98 171 3.4E-16 T 11-10-2018 IPR025965 FlgD Ig-like domain AMK58_25310 d0018249ae046509dd39a8f44ac73d94 216 Gene3D G3DSA:2.30.30.910 89 208 3.4E-20 T 11-10-2018 AMK58_28640 33ab23723004ef62daeb09b875320319 150 SUPERFAMILY SSF46626 25 146 1.12E-20 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_28640 33ab23723004ef62daeb09b875320319 150 Pfam PF00034 Cytochrome c 50 134 3.9E-10 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_28640 33ab23723004ef62daeb09b875320319 150 Gene3D G3DSA:1.10.760.10 1 150 1.9E-39 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_17450 1c4bc07738d3562af0ebba3f9206cb61 398 Gene3D G3DSA:1.10.1740.110 209 315 6.1E-116 T 11-10-2018 AMK58_17450 1c4bc07738d3562af0ebba3f9206cb61 398 Hamap MF_00296 Homoserine O-acetyltransferase [metXA]. 27 397 24.996 T 11-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 AMK58_17450 1c4bc07738d3562af0ebba3f9206cb61 398 PIRSF PIRSF000443 14 398 1.6E-107 T 11-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 AMK58_17450 1c4bc07738d3562af0ebba3f9206cb61 398 SUPERFAMILY SSF53474 31 396 1.07E-73 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_17450 1c4bc07738d3562af0ebba3f9206cb61 398 Gene3D G3DSA:3.40.50.1820 44 383 6.1E-116 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_17450 1c4bc07738d3562af0ebba3f9206cb61 398 Pfam PF00561 alpha/beta hydrolase fold 137 361 5.9E-18 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_22560 1225c0620195d40181dc7f557ad0347f 141 SUPERFAMILY SSF82784 4 131 9.16E-38 T 11-10-2018 IPR036102 OsmC/Ohr superfamily AMK58_22560 1225c0620195d40181dc7f557ad0347f 141 Gene3D G3DSA:3.30.300.20 1 141 6.9E-42 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta AMK58_22560 1225c0620195d40181dc7f557ad0347f 141 TIGRFAM TIGR03562 osmo_induc_OsmC: peroxiredoxin, OsmC subfamily 4 138 3.6E-58 T 11-10-2018 IPR019904 Peroxiredoxin OsmC GO:0004601|GO:0006979 KEGG: 00480+1.11.1.15 AMK58_22560 1225c0620195d40181dc7f557ad0347f 141 Pfam PF02566 OsmC-like protein 41 136 5.2E-21 T 11-10-2018 IPR003718 OsmC/Ohr family AMK58_03965 94aea2ca76c20d721f8fe7fdf0c92911 332 PIRSF PIRSF004486 9 320 5.0E-103 T 11-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 AMK58_03965 94aea2ca76c20d721f8fe7fdf0c92911 332 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 15 319 38.525 T 11-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 AMK58_03965 94aea2ca76c20d721f8fe7fdf0c92911 332 SUPERFAMILY SSF53335 14 318 5.35E-51 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_03965 94aea2ca76c20d721f8fe7fdf0c92911 332 Pfam PF01795 MraW methylase family 13 318 2.8E-102 T 11-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 AMK58_03965 94aea2ca76c20d721f8fe7fdf0c92911 332 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 13 318 2.2E-96 T 11-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 AMK58_03965 94aea2ca76c20d721f8fe7fdf0c92911 332 Gene3D G3DSA:1.10.150.170 120 222 7.2E-105 T 11-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 AMK58_03965 94aea2ca76c20d721f8fe7fdf0c92911 332 Gene3D G3DSA:3.40.50.150 15 317 7.2E-105 T 11-10-2018 AMK58_03965 94aea2ca76c20d721f8fe7fdf0c92911 332 SUPERFAMILY SSF81799 122 221 2.88E-35 T 11-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 AMK58_23600 c807203812e8ebe478890d34c6946f61 132 Gene3D G3DSA:3.40.50.2300 1 119 4.3E-32 T 11-10-2018 AMK58_23600 c807203812e8ebe478890d34c6946f61 132 Pfam PF00072 Response regulator receiver domain 3 109 9.1E-12 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_23600 c807203812e8ebe478890d34c6946f61 132 SMART SM00448 1 109 3.9E-15 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_23600 c807203812e8ebe478890d34c6946f61 132 SUPERFAMILY SSF52172 1 114 1.11E-21 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_27165 aeb4c412ee65cf3ac3784d01c8da2db6 550 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 85 456 1.3E-88 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain AMK58_27165 aeb4c412ee65cf3ac3784d01c8da2db6 550 Gene3D G3DSA:3.10.105.10 303 529 9.1E-127 T 11-10-2018 AMK58_27165 aeb4c412ee65cf3ac3784d01c8da2db6 550 Gene3D G3DSA:3.90.76.10 75 193 9.1E-127 T 11-10-2018 AMK58_27165 aeb4c412ee65cf3ac3784d01c8da2db6 550 SUPERFAMILY SSF53850 38 532 1.41E-125 T 11-10-2018 AMK58_27165 aeb4c412ee65cf3ac3784d01c8da2db6 550 Gene3D G3DSA:3.40.190.10 49 302 9.1E-127 T 11-10-2018 AMK58_27165 aeb4c412ee65cf3ac3784d01c8da2db6 550 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 90 111 - T 11-10-2018 IPR023765 Solute-binding protein family 5, conserved site AMK58_27165 aeb4c412ee65cf3ac3784d01c8da2db6 550 PIRSF PIRSF002741 8 546 3.7E-96 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMK58_13140 4f734510c6c136023ea3dca817a6288f 334 SUPERFAMILY SSF46626 177 328 3.35E-43 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_13140 4f734510c6c136023ea3dca817a6288f 334 Gene3D G3DSA:1.10.760.10 41 314 1.8E-117 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_13140 4f734510c6c136023ea3dca817a6288f 334 Pfam PF03150 Di-haem cytochrome c peroxidase 44 190 5.8E-54 T 11-10-2018 IPR004852 Di-haem cytochrome c peroxidase GO:0016491|GO:0055114 AMK58_13140 4f734510c6c136023ea3dca817a6288f 334 Gene3D G3DSA:1.10.760.10 43 190 1.8E-117 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_13140 4f734510c6c136023ea3dca817a6288f 334 Pfam PF00034 Cytochrome c 199 308 6.7E-10 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_13140 4f734510c6c136023ea3dca817a6288f 334 SUPERFAMILY SSF46626 24 178 7.64E-50 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_13140 4f734510c6c136023ea3dca817a6288f 334 PIRSF PIRSF000294 2 332 3.0E-131 T 11-10-2018 IPR026259 Di-c-type haem protein, MauG/cytochrome c peroxidase GO:0016491|GO:0020037|GO:0055114 AMK58_05270 5f25bf941cb2e6fcdf9546668ad74f0c 448 SUPERFAMILY SSF56112 87 302 2.53E-20 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily AMK58_05270 5f25bf941cb2e6fcdf9546668ad74f0c 448 Pfam PF03109 ABC1 family 104 218 1.3E-26 T 11-10-2018 IPR004147 UbiB domain AMK58_03010 eb156b85611c2b290cb4505840d26fc0 357 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 10 357 3.9E-126 T 11-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 AMK58_03010 eb156b85611c2b290cb4505840d26fc0 357 Gene3D G3DSA:3.20.20.70 5 357 4.2E-149 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_03010 eb156b85611c2b290cb4505840d26fc0 357 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 292 312 - T 11-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 AMK58_03010 eb156b85611c2b290cb4505840d26fc0 357 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 79 98 - T 11-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 AMK58_03010 eb156b85611c2b290cb4505840d26fc0 357 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 4 336 43.631 T 11-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 AMK58_03010 eb156b85611c2b290cb4505840d26fc0 357 Pfam PF01180 Dihydroorotate dehydrogenase 44 340 3.3E-94 T 11-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 AMK58_03010 eb156b85611c2b290cb4505840d26fc0 357 SUPERFAMILY SSF51395 7 356 6.72E-112 T 11-10-2018 AMK58_06365 69d84b1ece4aab486cae7d2d71a81c9a 232 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 185 197 9.4E-9 T 11-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 AMK58_06365 69d84b1ece4aab486cae7d2d71a81c9a 232 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 156 167 9.4E-9 T 11-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 AMK58_06365 69d84b1ece4aab486cae7d2d71a81c9a 232 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 145 155 9.4E-9 T 11-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 AMK58_06365 69d84b1ece4aab486cae7d2d71a81c9a 232 Pfam PF01726 LexA DNA binding domain 2 63 1.0E-13 T 11-10-2018 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 AMK58_06365 69d84b1ece4aab486cae7d2d71a81c9a 232 SUPERFAMILY SSF46785 2 68 1.8E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_06365 69d84b1ece4aab486cae7d2d71a81c9a 232 Hamap MF_00015 LexA repressor [lexA]. 1 232 32.435 T 11-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 AMK58_06365 69d84b1ece4aab486cae7d2d71a81c9a 232 Gene3D G3DSA:1.10.10.10 1 68 5.2E-15 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_06365 69d84b1ece4aab486cae7d2d71a81c9a 232 Gene3D G3DSA:2.10.109.10 114 232 8.2E-35 T 11-10-2018 AMK58_06365 69d84b1ece4aab486cae7d2d71a81c9a 232 SUPERFAMILY SSF51306 108 230 9.24E-30 T 11-10-2018 IPR036286 LexA/Signal peptidase-like superfamily AMK58_06365 69d84b1ece4aab486cae7d2d71a81c9a 232 Pfam PF00717 Peptidase S24-like 148 211 2.7E-10 T 11-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AMK58_06365 69d84b1ece4aab486cae7d2d71a81c9a 232 TIGRFAM TIGR00498 lexA: repressor LexA 2 231 1.4E-49 T 11-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 AMK58_07460 291515e249b5b231d2424b5b8ff09753 363 SUPERFAMILY SSF52096 15 334 2.67E-67 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMK58_07460 291515e249b5b231d2424b5b8ff09753 363 Pfam PF16113 Enoyl-CoA hydratase/isomerase 25 351 3.8E-130 T 11-10-2018 IPR032259 Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type GO:0003860 Reactome: R-HSA-70895 AMK58_07460 291515e249b5b231d2424b5b8ff09753 363 Gene3D G3DSA:3.90.226.40 8 361 1.4E-132 T 11-10-2018 AMK58_24170 e1a68eb0dbafffd535efc586346ccd38 271 Gene3D G3DSA:3.40.50.1110 70 263 1.9E-35 T 11-10-2018 IPR036514 SGNH hydrolase superfamily AMK58_24170 e1a68eb0dbafffd535efc586346ccd38 271 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 73 245 5.1E-18 T 11-10-2018 IPR013830 SGNH hydrolase-type esterase domain AMK58_24170 e1a68eb0dbafffd535efc586346ccd38 271 SUPERFAMILY SSF52266 68 258 1.22E-36 T 11-10-2018 AMK58_23665 4ff7198d85ad0b002814df18d15788e0 446 Pfam PF00285 Citrate synthase, C-terminal domain 62 428 1.5E-131 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 AMK58_23665 4ff7198d85ad0b002814df18d15788e0 446 Gene3D G3DSA:1.10.580.10 73 428 2.3E-144 T 11-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 AMK58_23665 4ff7198d85ad0b002814df18d15788e0 446 Gene3D G3DSA:2.20.28.60 13 66 1.2E-17 T 11-10-2018 AMK58_23665 4ff7198d85ad0b002814df18d15788e0 446 PRINTS PR00143 Citrate synthase signature 235 250 2.0E-56 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 AMK58_23665 4ff7198d85ad0b002814df18d15788e0 446 PRINTS PR00143 Citrate synthase signature 396 410 2.0E-56 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 AMK58_23665 4ff7198d85ad0b002814df18d15788e0 446 PRINTS PR00143 Citrate synthase signature 181 194 2.0E-56 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 AMK58_23665 4ff7198d85ad0b002814df18d15788e0 446 PRINTS PR00143 Citrate synthase signature 257 285 2.0E-56 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 AMK58_23665 4ff7198d85ad0b002814df18d15788e0 446 PRINTS PR00143 Citrate synthase signature 376 392 2.0E-56 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 AMK58_23665 4ff7198d85ad0b002814df18d15788e0 446 PRINTS PR00143 Citrate synthase signature 312 332 2.0E-56 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 AMK58_23665 4ff7198d85ad0b002814df18d15788e0 446 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 29 438 1.7E-236 T 11-10-2018 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 AMK58_23665 4ff7198d85ad0b002814df18d15788e0 446 Gene3D G3DSA:1.10.230.10 284 393 2.3E-144 T 11-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain AMK58_23665 4ff7198d85ad0b002814df18d15788e0 446 SUPERFAMILY SSF48256 25 445 7.33E-167 T 11-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 AMK58_23665 4ff7198d85ad0b002814df18d15788e0 446 PIRSF PIRSF001369 53 446 6.7E-170 T 11-10-2018 IPR024176 Citrate synthase, bacterial-type AMK58_23665 4ff7198d85ad0b002814df18d15788e0 446 ProSitePatterns PS00480 Citrate synthase signature. 319 331 - T 11-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 AMK58_02365 1c06ebe1c681244394fbee0653a6aadb 245 Gene3D G3DSA:3.30.565.10 95 245 5.8E-18 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_02365 1c06ebe1c681244394fbee0653a6aadb 245 SUPERFAMILY SSF55874 113 244 8.08E-8 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_02365 1c06ebe1c681244394fbee0653a6aadb 245 Pfam PF13581 Histidine kinase-like ATPase domain 107 242 2.9E-13 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_17245 14881bc82e94bb10354a6ad77d2eac39 517 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 397 514 1.9E-16 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_17245 14881bc82e94bb10354a6ad77d2eac39 517 SMART SM00387 395 516 2.0E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_17245 14881bc82e94bb10354a6ad77d2eac39 517 SUPERFAMILY SSF55874 356 514 5.24E-31 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_17245 14881bc82e94bb10354a6ad77d2eac39 517 Gene3D G3DSA:3.30.565.10 356 517 1.2E-31 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_17245 14881bc82e94bb10354a6ad77d2eac39 517 SUPERFAMILY SSF47384 267 338 1.22E-5 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_17245 14881bc82e94bb10354a6ad77d2eac39 517 Gene3D G3DSA:1.10.287.130 227 340 2.0E-7 T 11-10-2018 AMK58_10135 5e58ee06ca74d174fe67660d51619129 240 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 11-10-2018 IPR019776 Flagellar basal body rod protein, conserved site AMK58_10135 5e58ee06ca74d174fe67660d51619129 240 Pfam PF00460 Flagella basal body rod protein 5 35 1.8E-11 T 11-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 AMK58_10135 5e58ee06ca74d174fe67660d51619129 240 SUPERFAMILY SSF117143 77 197 3.92E-22 T 11-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like AMK58_10135 5e58ee06ca74d174fe67660d51619129 240 TIGRFAM TIGR02490 flgF: flagellar basal-body rod protein FlgF 5 216 2.0E-60 T 11-10-2018 IPR012836 Flagellar basal-body rod FlgF GO:0030694|GO:0071973 AMK58_10135 5e58ee06ca74d174fe67660d51619129 240 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 5 120 2.4E-39 T 11-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G AMK58_10135 5e58ee06ca74d174fe67660d51619129 240 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 166 234 6.2E-18 T 11-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain AMK58_05425 84ddb983678730f87814addf254aa096 312 Pfam PF02511 Thymidylate synthase complementing protein 46 256 2.9E-57 T 11-10-2018 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00670+2.1.1.148|MetaCyc: PWY-6545 AMK58_05425 84ddb983678730f87814addf254aa096 312 SUPERFAMILY SSF69796 37 271 1.24E-71 T 11-10-2018 IPR036098 Thymidylate synthase ThyX superfamily GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00670+2.1.1.148|MetaCyc: PWY-6545 AMK58_05425 84ddb983678730f87814addf254aa096 312 Gene3D G3DSA:3.30.1360.170 30 277 1.9E-74 T 11-10-2018 AMK58_05425 84ddb983678730f87814addf254aa096 312 Hamap MF_01408 Flavin-dependent thymidylate synthase [thyX]. 40 270 29.496 T 11-10-2018 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00670+2.1.1.148|MetaCyc: PWY-6545 AMK58_05425 84ddb983678730f87814addf254aa096 312 TIGRFAM TIGR02170 thyX: thymidylate synthase, flavin-dependent 44 262 3.0E-65 T 11-10-2018 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00670+2.1.1.148|MetaCyc: PWY-6545 AMK58_11190 a1f82293735ed1f3d01507d9c3549da5 260 SUPERFAMILY SSF69593 54 237 9.81E-30 T 11-10-2018 AMK58_11190 a1f82293735ed1f3d01507d9c3549da5 260 SMART SM00563 88 197 4.2E-24 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMK58_11190 a1f82293735ed1f3d01507d9c3549da5 260 Pfam PF01553 Acyltransferase 74 194 1.5E-17 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMK58_18775 85a0b39bff336f2e88991beb9aed5418 294 Pfam PF09850 Type VI secretion system protein DotU 72 272 1.6E-21 T 11-10-2018 IPR017732 Type IV / VI secretion system, DotU AMK58_18775 85a0b39bff336f2e88991beb9aed5418 294 Gene3D G3DSA:1.25.40.590 67 221 1.5E-26 T 11-10-2018 IPR038522 Type IV / VI secretion system, DotU superfamily AMK58_17790 ec32c5068fa701c59e96b1a71eb69eac 286 Gene3D G3DSA:3.90.550.10 7 233 1.5E-23 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_17790 ec32c5068fa701c59e96b1a71eb69eac 286 SUPERFAMILY SSF53448 9 214 2.34E-27 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_17790 ec32c5068fa701c59e96b1a71eb69eac 286 Pfam PF00535 Glycosyl transferase family 2 10 189 4.7E-17 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMK58_02910 5393bfd94826c65e9205a48afb33ba65 276 Gene3D G3DSA:1.10.443.10 36 264 2.1E-16 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMK58_02910 5393bfd94826c65e9205a48afb33ba65 276 SUPERFAMILY SSF56349 40 258 2.16E-15 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMK58_28655 0b1d3ba3673e245851b5166148dba504 425 TIGRFAM TIGR03253 oxalate_frc: formyl-CoA transferase 3 414 2.2E-223 T 11-10-2018 IPR017659 Formyl-CoA:oxalate CoA-transferase GO:0033608 MetaCyc: PWY-6695 AMK58_28655 0b1d3ba3673e245851b5166148dba504 425 Gene3D G3DSA:3.40.50.10540 5 406 9.4E-157 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily AMK58_28655 0b1d3ba3673e245851b5166148dba504 425 Gene3D G3DSA:3.30.1540.10 241 337 9.4E-157 T 11-10-2018 AMK58_28655 0b1d3ba3673e245851b5166148dba504 425 Pfam PF02515 CoA-transferase family III 5 391 6.7E-104 T 11-10-2018 IPR003673 CoA-transferase family III GO:0003824 AMK58_28655 0b1d3ba3673e245851b5166148dba504 425 SUPERFAMILY SSF89796 3 414 5.23E-125 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily AMK58_28655 0b1d3ba3673e245851b5166148dba504 425 Hamap MF_00742 Formyl-CoA:oxalate CoA-transferase [frc]. 1 415 66.242 T 11-10-2018 IPR017659 Formyl-CoA:oxalate CoA-transferase GO:0033608 MetaCyc: PWY-6695 AMK58_19130 a9b85d383970edce44cb233f7dc1fea5 526 SUPERFAMILY SSF51905 205 514 1.67E-52 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_19130 a9b85d383970edce44cb233f7dc1fea5 526 SUPERFAMILY SSF52833 104 196 1.55E-21 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_19130 a9b85d383970edce44cb233f7dc1fea5 526 Gene3D G3DSA:3.50.50.60 326 449 7.9E-112 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_19130 a9b85d383970edce44cb233f7dc1fea5 526 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 344 364 - T 11-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 AMK58_19130 a9b85d383970edce44cb233f7dc1fea5 526 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 213 235 7.6E-65 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMK58_19130 a9b85d383970edce44cb233f7dc1fea5 526 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 404 420 7.6E-65 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMK58_19130 a9b85d383970edce44cb233f7dc1fea5 526 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 245 260 7.6E-65 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMK58_19130 a9b85d383970edce44cb233f7dc1fea5 526 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 352 376 7.6E-65 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMK58_19130 a9b85d383970edce44cb233f7dc1fea5 526 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 265 275 7.6E-65 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMK58_19130 a9b85d383970edce44cb233f7dc1fea5 526 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 337 349 7.6E-65 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMK58_19130 a9b85d383970edce44cb233f7dc1fea5 526 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 443 464 7.6E-65 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMK58_19130 a9b85d383970edce44cb233f7dc1fea5 526 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 477 495 7.6E-65 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMK58_19130 a9b85d383970edce44cb233f7dc1fea5 526 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 315 323 7.6E-65 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMK58_19130 a9b85d383970edce44cb233f7dc1fea5 526 PIRSF PIRSF000238 1 520 5.0E-267 T 11-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 AMK58_19130 a9b85d383970edce44cb233f7dc1fea5 526 Gene3D G3DSA:3.50.50.60 212 507 7.9E-112 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_19130 a9b85d383970edce44cb233f7dc1fea5 526 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 467 489 1.5E-40 T 11-10-2018 AMK58_19130 a9b85d383970edce44cb233f7dc1fea5 526 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 214 233 1.5E-40 T 11-10-2018 AMK58_19130 a9b85d383970edce44cb233f7dc1fea5 526 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 356 374 1.5E-40 T 11-10-2018 AMK58_19130 a9b85d383970edce44cb233f7dc1fea5 526 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 314 332 1.5E-40 T 11-10-2018 AMK58_19130 a9b85d383970edce44cb233f7dc1fea5 526 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 441 457 1.5E-40 T 11-10-2018 AMK58_19130 a9b85d383970edce44cb233f7dc1fea5 526 Pfam PF13192 Thioredoxin domain 124 194 1.6E-6 T 11-10-2018 IPR012336 Thioredoxin-like fold AMK58_19130 a9b85d383970edce44cb233f7dc1fea5 526 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 212 503 1.7E-46 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMK58_19130 a9b85d383970edce44cb233f7dc1fea5 526 TIGRFAM TIGR03140 AhpF: alkyl hydroperoxide reductase subunit F 1 516 4.9E-244 T 11-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 AMK58_19130 a9b85d383970edce44cb233f7dc1fea5 526 SUPERFAMILY SSF52833 2 100 4.7E-30 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_19130 a9b85d383970edce44cb233f7dc1fea5 526 Gene3D G3DSA:3.40.30.80 1 199 2.0E-63 T 11-10-2018 AMK58_25220 a2e1b2b647c0394be5f263219973bff9 419 SUPERFAMILY SSF53720 4 368 5.24E-80 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMK58_25220 a2e1b2b647c0394be5f263219973bff9 419 Gene3D G3DSA:3.40.605.10 1 162 9.9E-34 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMK58_25220 a2e1b2b647c0394be5f263219973bff9 419 Gene3D G3DSA:3.40.309.10 163 374 1.3E-44 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMK58_25220 a2e1b2b647c0394be5f263219973bff9 419 Pfam PF00171 Aldehyde dehydrogenase family 38 366 1.6E-70 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMK58_10935 a5aa564da7a5ee667bc6dd461f6d8999 271 SUPERFAMILY SSF51735 4 228 4.96E-49 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_10935 a5aa564da7a5ee667bc6dd461f6d8999 271 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 5.6E-5 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_10935 a5aa564da7a5ee667bc6dd461f6d8999 271 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 5.6E-5 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_10935 a5aa564da7a5ee667bc6dd461f6d8999 271 Gene3D G3DSA:3.40.50.720 1 240 4.2E-51 T 11-10-2018 AMK58_10935 a5aa564da7a5ee667bc6dd461f6d8999 271 Pfam PF00106 short chain dehydrogenase 5 193 5.4E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_10935 a5aa564da7a5ee667bc6dd461f6d8999 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 5.3E-16 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_10935 a5aa564da7a5ee667bc6dd461f6d8999 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 5.3E-16 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_10935 a5aa564da7a5ee667bc6dd461f6d8999 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 5.3E-16 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_10935 a5aa564da7a5ee667bc6dd461f6d8999 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 5.3E-16 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_10935 a5aa564da7a5ee667bc6dd461f6d8999 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 5.3E-16 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_10935 a5aa564da7a5ee667bc6dd461f6d8999 271 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4 188 4.0E-4 T 11-10-2018 AMK58_10935 a5aa564da7a5ee667bc6dd461f6d8999 271 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMK58_10935 a5aa564da7a5ee667bc6dd461f6d8999 271 PIRSF PIRSF000126 1 256 5.0E-56 T 11-10-2018 AMK58_02025 77783ad3b6563344215f545b609aaa40 308 Gene3D G3DSA:3.30.160.40 225 308 1.3E-23 T 11-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMK58_02025 77783ad3b6563344215f545b609aaa40 308 SUPERFAMILY SSF54782 223 306 2.09E-21 T 11-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMK58_02025 77783ad3b6563344215f545b609aaa40 308 Gene3D G3DSA:3.40.190.10 106 205 3.0E-80 T 11-10-2018 AMK58_02025 77783ad3b6563344215f545b609aaa40 308 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 5 297 2.6E-105 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMK58_02025 77783ad3b6563344215f545b609aaa40 308 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 5 215 2.0E-73 T 11-10-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMK58_02025 77783ad3b6563344215f545b609aaa40 308 SUPERFAMILY SSF53850 4 222 1.55E-77 T 11-10-2018 AMK58_02025 77783ad3b6563344215f545b609aaa40 308 Gene3D G3DSA:3.40.190.10 5 213 3.0E-80 T 11-10-2018 AMK58_02025 77783ad3b6563344215f545b609aaa40 308 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 4 300 36.492 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMK58_02025 77783ad3b6563344215f545b609aaa40 308 PIRSF PIRSF001438 1 308 3.7E-113 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMK58_02025 77783ad3b6563344215f545b609aaa40 308 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 234 250 - T 11-10-2018 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMK58_02025 77783ad3b6563344215f545b609aaa40 308 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 229 298 6.9E-17 T 11-10-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMK58_02025 77783ad3b6563344215f545b609aaa40 308 PRINTS PR00151 Porphobilinogen deaminase signature 233 250 4.6E-43 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMK58_02025 77783ad3b6563344215f545b609aaa40 308 PRINTS PR00151 Porphobilinogen deaminase signature 127 144 4.6E-43 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMK58_02025 77783ad3b6563344215f545b609aaa40 308 PRINTS PR00151 Porphobilinogen deaminase signature 48 68 4.6E-43 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMK58_02025 77783ad3b6563344215f545b609aaa40 308 PRINTS PR00151 Porphobilinogen deaminase signature 79 98 4.6E-43 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMK58_02025 77783ad3b6563344215f545b609aaa40 308 PRINTS PR00151 Porphobilinogen deaminase signature 146 163 4.6E-43 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMK58_26900 59c885fbdb1bff945bff796f0424b7b7 341 TIGRFAM TIGR02866 CoxB: cytochrome c oxidase, subunit II 42 236 3.7E-47 T 11-10-2018 IPR014222 Cytochrome c oxidase, subunit II GO:0016021|GO:0016491 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_26900 59c885fbdb1bff945bff796f0424b7b7 341 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 146 223 2.7E-22 T 11-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_26900 59c885fbdb1bff945bff796f0424b7b7 341 SUPERFAMILY SSF49503 120 277 7.5E-50 T 11-10-2018 IPR008972 Cupredoxin AMK58_26900 59c885fbdb1bff945bff796f0424b7b7 341 SUPERFAMILY SSF46626 245 340 3.93E-16 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_26900 59c885fbdb1bff945bff796f0424b7b7 341 Gene3D G3DSA:2.60.40.2600 120 341 3.0E-76 T 11-10-2018 AMK58_26900 59c885fbdb1bff945bff796f0424b7b7 341 Pfam PF00034 Cytochrome c 253 341 1.6E-6 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_26900 59c885fbdb1bff945bff796f0424b7b7 341 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 172 220 - T 11-10-2018 IPR001505 Copper centre Cu(A) GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_04805 d2a595f5c4e9be7dee40546a4e339503 495 SUPERFAMILY SSF55103 200 469 1.64E-72 T 11-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 AMK58_04805 d2a595f5c4e9be7dee40546a4e339503 495 Gene3D G3DSA:3.30.465.40 15 235 6.2E-63 T 11-10-2018 AMK58_04805 d2a595f5c4e9be7dee40546a4e339503 495 SUPERFAMILY SSF56176 15 227 1.26E-67 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMK58_04805 d2a595f5c4e9be7dee40546a4e339503 495 Gene3D G3DSA:1.10.45.10 428 468 1.6E-13 T 11-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 AMK58_04805 d2a595f5c4e9be7dee40546a4e339503 495 Pfam PF02913 FAD linked oxidases, C-terminal domain 226 467 6.0E-66 T 11-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 AMK58_04805 d2a595f5c4e9be7dee40546a4e339503 495 Gene3D G3DSA:3.30.70.2740 346 427 2.1E-6 T 11-10-2018 AMK58_04805 d2a595f5c4e9be7dee40546a4e339503 495 Pfam PF01565 FAD binding domain 52 191 1.9E-36 T 11-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMK58_02215 a2543379f4c051880bb9e6ac48c30697 228 Gene3D G3DSA:3.40.50.1000 4 207 4.9E-81 T 11-10-2018 IPR023214 HAD superfamily AMK58_02215 a2543379f4c051880bb9e6ac48c30697 228 Gene3D G3DSA:1.10.150.240 17 98 4.9E-81 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 AMK58_02215 a2543379f4c051880bb9e6ac48c30697 228 Pfam PF13419 Haloacid dehalogenase-like hydrolase 34 182 2.9E-8 T 11-10-2018 AMK58_02215 a2543379f4c051880bb9e6ac48c30697 228 SUPERFAMILY SSF56784 1 225 8.55E-34 T 11-10-2018 IPR036412 HAD-like superfamily AMK58_24270 198b702908739c182b6c1e4d779acf15 709 TIGRFAM TIGR01497 kdpB: K+-transporting ATPase, B subunit 14 416 2.9E-165 T 11-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 AMK58_24270 198b702908739c182b6c1e4d779acf15 709 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 79 345 7.3E-34 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AMK58_24270 198b702908739c182b6c1e4d779acf15 709 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 439 629 2.1E-43 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AMK58_24270 198b702908739c182b6c1e4d779acf15 709 Gene3D G3DSA:3.40.1110.10 319 478 7.2E-50 T 11-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AMK58_24270 198b702908739c182b6c1e4d779acf15 709 SUPERFAMILY SSF56784 296 586 5.1E-36 T 11-10-2018 IPR036412 HAD-like superfamily AMK58_24270 198b702908739c182b6c1e4d779acf15 709 SUPERFAMILY SSF81653 111 210 2.35E-23 T 11-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 AMK58_24270 198b702908739c182b6c1e4d779acf15 709 Pfam PF00702 haloacid dehalogenase-like hydrolase 304 557 1.5E-30 T 11-10-2018 AMK58_24270 198b702908739c182b6c1e4d779acf15 709 Pfam PF00122 E1-E2 ATPase 109 287 8.6E-36 T 11-10-2018 AMK58_24270 198b702908739c182b6c1e4d779acf15 709 Gene3D G3DSA:2.70.150.20 109 215 1.9E-28 T 11-10-2018 AMK58_24270 198b702908739c182b6c1e4d779acf15 709 Gene3D G3DSA:3.40.50.1000 515 590 1.1E-20 T 11-10-2018 IPR023214 HAD superfamily AMK58_24270 198b702908739c182b6c1e4d779acf15 709 SUPERFAMILY SSF81660 319 477 2.13E-30 T 11-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AMK58_24270 198b702908739c182b6c1e4d779acf15 709 ProSitePatterns PS01229 Hypothetical cof family signature 2. 543 565 - T 11-10-2018 AMK58_24270 198b702908739c182b6c1e4d779acf15 709 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 310 316 - T 11-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 AMK58_24270 198b702908739c182b6c1e4d779acf15 709 Hamap MF_00285 Potassium-transporting ATPase ATP-binding subunit [kdpB]. 16 707 41.585 T 11-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 AMK58_24270 198b702908739c182b6c1e4d779acf15 709 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 157 171 4.9E-22 T 11-10-2018 AMK58_24270 198b702908739c182b6c1e4d779acf15 709 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 308 322 4.9E-22 T 11-10-2018 AMK58_24270 198b702908739c182b6c1e4d779acf15 709 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 566 578 4.9E-22 T 11-10-2018 AMK58_24270 198b702908739c182b6c1e4d779acf15 709 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 490 500 4.9E-22 T 11-10-2018 AMK58_24270 198b702908739c182b6c1e4d779acf15 709 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 543 562 4.9E-22 T 11-10-2018 AMK58_24270 198b702908739c182b6c1e4d779acf15 709 SUPERFAMILY SSF81665 53 302 2.48E-7 T 11-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 AMK58_05115 b053fa9eecdd57b72621058969d377a2 360 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 11 360 40.704 T 11-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 AMK58_05115 b053fa9eecdd57b72621058969d377a2 360 Gene3D G3DSA:3.30.470.20 183 360 9.5E-76 T 11-10-2018 AMK58_05115 b053fa9eecdd57b72621058969d377a2 360 Gene3D G3DSA:3.30.1490.20 113 182 1.6E-21 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMK58_05115 b053fa9eecdd57b72621058969d377a2 360 SUPERFAMILY SSF51246 311 358 1.26E-13 T 11-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AMK58_05115 b053fa9eecdd57b72621058969d377a2 360 SUPERFAMILY SSF52440 5 103 2.16E-21 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMK58_05115 b053fa9eecdd57b72621058969d377a2 360 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 11 357 4.1E-115 T 11-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 AMK58_05115 b053fa9eecdd57b72621058969d377a2 360 Pfam PF02222 ATP-grasp domain 118 286 1.6E-58 T 11-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type AMK58_05115 b053fa9eecdd57b72621058969d377a2 360 SUPERFAMILY SSF56059 108 305 6.36E-63 T 11-10-2018 AMK58_05115 b053fa9eecdd57b72621058969d377a2 360 Gene3D G3DSA:3.40.50.20 5 112 2.5E-34 T 11-10-2018 AMK58_09695 b3a3cf982b0ab04a28f09684255cbe28 848 Pfam PF00989 PAS fold 203 312 2.4E-14 T 11-10-2018 IPR013767 PAS fold GO:0006355 AMK58_09695 b3a3cf982b0ab04a28f09684255cbe28 848 Gene3D G3DSA:3.30.565.10 543 696 2.0E-37 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_09695 b3a3cf982b0ab04a28f09684255cbe28 848 Gene3D G3DSA:3.30.450.20 320 465 6.6E-11 T 11-10-2018 AMK58_09695 b3a3cf982b0ab04a28f09684255cbe28 848 Gene3D G3DSA:3.30.450.20 187 319 1.3E-22 T 11-10-2018 AMK58_09695 b3a3cf982b0ab04a28f09684255cbe28 848 SMART SM00091 201 267 1.5E-10 T 11-10-2018 IPR000014 PAS domain AMK58_09695 b3a3cf982b0ab04a28f09684255cbe28 848 SMART SM00091 327 394 10.0 T 11-10-2018 IPR000014 PAS domain AMK58_09695 b3a3cf982b0ab04a28f09684255cbe28 848 SMART SM00091 65 131 3.1E-4 T 11-10-2018 IPR000014 PAS domain AMK58_09695 b3a3cf982b0ab04a28f09684255cbe28 848 SMART SM00448 721 834 1.4E-18 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_09695 b3a3cf982b0ab04a28f09684255cbe28 848 SUPERFAMILY SSF55785 52 164 1.21E-12 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_09695 b3a3cf982b0ab04a28f09684255cbe28 848 SUPERFAMILY SSF55785 212 323 2.44E-19 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_09695 b3a3cf982b0ab04a28f09684255cbe28 848 PRINTS PR00344 Bacterial sensor protein C-terminal signature 639 649 2.3E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_09695 b3a3cf982b0ab04a28f09684255cbe28 848 PRINTS PR00344 Bacterial sensor protein C-terminal signature 680 693 2.3E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_09695 b3a3cf982b0ab04a28f09684255cbe28 848 PRINTS PR00344 Bacterial sensor protein C-terminal signature 656 674 2.3E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_09695 b3a3cf982b0ab04a28f09684255cbe28 848 PRINTS PR00344 Bacterial sensor protein C-terminal signature 621 635 2.3E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_09695 b3a3cf982b0ab04a28f09684255cbe28 848 SUPERFAMILY SSF47384 463 541 2.55E-11 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_09695 b3a3cf982b0ab04a28f09684255cbe28 848 Gene3D G3DSA:3.40.50.2300 713 848 2.3E-26 T 11-10-2018 AMK58_09695 b3a3cf982b0ab04a28f09684255cbe28 848 Gene3D G3DSA:1.10.287.130 466 542 3.0E-11 T 11-10-2018 AMK58_09695 b3a3cf982b0ab04a28f09684255cbe28 848 SUPERFAMILY SSF52172 721 843 1.71E-27 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_09695 b3a3cf982b0ab04a28f09684255cbe28 848 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 586 694 1.4E-24 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_09695 b3a3cf982b0ab04a28f09684255cbe28 848 SUPERFAMILY SSF55874 532 694 7.99E-41 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_09695 b3a3cf982b0ab04a28f09684255cbe28 848 SMART SM00387 585 696 3.4E-35 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_09695 b3a3cf982b0ab04a28f09684255cbe28 848 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 199 322 1.8E-18 T 11-10-2018 IPR000014 PAS domain AMK58_09695 b3a3cf982b0ab04a28f09684255cbe28 848 Gene3D G3DSA:3.30.450.20 50 180 1.6E-10 T 11-10-2018 AMK58_09695 b3a3cf982b0ab04a28f09684255cbe28 848 SUPERFAMILY SSF55785 312 461 1.54E-10 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_09695 b3a3cf982b0ab04a28f09684255cbe28 848 Pfam PF00072 Response regulator receiver domain 723 834 1.7E-15 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_09695 b3a3cf982b0ab04a28f09684255cbe28 848 SMART SM00388 476 541 8.0E-8 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_06040 4b45c50e4e5b29b23ddb18000460717b 469 Gene3D G3DSA:3.10.20.70 4 105 1.1E-36 T 11-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMK58_06040 4b45c50e4e5b29b23ddb18000460717b 469 SMART SM01230 103 379 1.3E-150 T 11-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMK58_06040 4b45c50e4e5b29b23ddb18000460717b 469 SUPERFAMILY SSF54368 5 102 2.88E-35 T 11-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMK58_06040 4b45c50e4e5b29b23ddb18000460717b 469 SUPERFAMILY SSF55931 104 468 2.06E-138 T 11-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 AMK58_06040 4b45c50e4e5b29b23ddb18000460717b 469 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 386 398 - T 11-10-2018 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMK58_06040 4b45c50e4e5b29b23ddb18000460717b 469 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 15 96 1.1E-30 T 11-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 AMK58_06040 4b45c50e4e5b29b23ddb18000460717b 469 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 6 468 7.2E-205 T 11-10-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMK58_06040 4b45c50e4e5b29b23ddb18000460717b 469 Gene3D G3DSA:3.30.590.10 106 455 2.4E-144 T 11-10-2018 AMK58_06040 4b45c50e4e5b29b23ddb18000460717b 469 ProSitePatterns PS00180 Glutamine synthetase signature 1. 51 69 - T 11-10-2018 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 AMK58_06040 4b45c50e4e5b29b23ddb18000460717b 469 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 259 274 - T 11-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 AMK58_06040 4b45c50e4e5b29b23ddb18000460717b 469 Pfam PF00120 Glutamine synthetase, catalytic domain 104 466 1.5E-141 T 11-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMK58_21555 89bfdbad33d98e17e28a4fe6ac48fcae 257 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 16 256 1.0E-71 T 11-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 AMK58_21555 89bfdbad33d98e17e28a4fe6ac48fcae 257 PIRSF PIRSF015626 3 257 1.6E-78 T 11-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 AMK58_21555 89bfdbad33d98e17e28a4fe6ac48fcae 257 Gene3D G3DSA:3.40.140.10 111 257 1.5E-49 T 11-10-2018 AMK58_21555 89bfdbad33d98e17e28a4fe6ac48fcae 257 Pfam PF02634 FdhD/NarQ family 19 255 2.6E-75 T 11-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 AMK58_21555 89bfdbad33d98e17e28a4fe6ac48fcae 257 SUPERFAMILY SSF53927 3 255 5.11E-80 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 AMK58_21555 89bfdbad33d98e17e28a4fe6ac48fcae 257 Hamap MF_00187 Sulfur carrier protein FdhD [fdhD]. 2 257 33.974 T 11-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 AMK58_21555 89bfdbad33d98e17e28a4fe6ac48fcae 257 Gene3D G3DSA:3.10.20.10 21 107 4.9E-11 T 11-10-2018 AMK58_28135 7f136ca0cfcd2ce29321960f2b83fdd6 1171 Pfam PF12770 CHAT domain 49 283 2.2E-22 T 11-10-2018 IPR024983 CHAT domain AMK58_28135 7f136ca0cfcd2ce29321960f2b83fdd6 1171 Pfam PF13191 AAA ATPase domain 331 452 8.7E-9 T 11-10-2018 AMK58_28135 7f136ca0cfcd2ce29321960f2b83fdd6 1171 SUPERFAMILY SSF52540 317 566 6.44E-8 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_28135 7f136ca0cfcd2ce29321960f2b83fdd6 1171 Gene3D G3DSA:1.25.40.10 807 1017 3.0E-22 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_28135 7f136ca0cfcd2ce29321960f2b83fdd6 1171 SUPERFAMILY SSF48452 822 973 1.01E-7 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_28135 7f136ca0cfcd2ce29321960f2b83fdd6 1171 SUPERFAMILY SSF48452 937 1058 7.17E-8 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_28135 7f136ca0cfcd2ce29321960f2b83fdd6 1171 Gene3D G3DSA:1.25.40.10 1018 1171 4.0E-9 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_28135 7f136ca0cfcd2ce29321960f2b83fdd6 1171 Gene3D G3DSA:3.40.50.300 318 509 1.3E-7 T 11-10-2018 AMK58_19610 3e731c12b43c457014931bda8f321a69 353 Pfam PF00691 OmpA family 236 327 1.3E-10 T 11-10-2018 IPR006665 OmpA-like domain AMK58_19610 3e731c12b43c457014931bda8f321a69 353 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 15 66 4.2E-18 T 11-10-2018 IPR025713 Motility protein B, N-terminal domain AMK58_19610 3e731c12b43c457014931bda8f321a69 353 SUPERFAMILY SSF103088 223 339 8.89E-18 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMK58_19610 3e731c12b43c457014931bda8f321a69 353 Gene3D G3DSA:3.30.1330.60 183 353 2.3E-48 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMK58_24035 1dfabc722c01ad0d60e2f21e5c49b932 346 SUPERFAMILY SSF53697 9 344 8.41E-62 T 11-10-2018 AMK58_24035 1dfabc722c01ad0d60e2f21e5c49b932 346 Gene3D G3DSA:3.40.50.10490 195 331 3.1E-39 T 11-10-2018 AMK58_24035 1dfabc722c01ad0d60e2f21e5c49b932 346 Pfam PF01380 SIS domain 201 287 8.7E-16 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AMK58_24035 1dfabc722c01ad0d60e2f21e5c49b932 346 Pfam PF01380 SIS domain 46 162 1.1E-10 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AMK58_24035 1dfabc722c01ad0d60e2f21e5c49b932 346 Gene3D G3DSA:3.40.50.10490 4 191 8.8E-40 T 11-10-2018 AMK58_17030 c228a09cd5c57d7663f0778618f2ccb0 432 PIRSF PIRSF006809 4 430 1.7E-141 T 11-10-2018 IPR016496 GTPase HflX GO:0005525 AMK58_17030 c228a09cd5c57d7663f0778618f2ccb0 432 Hamap MF_00900 GTPase HflX [hflX]. 25 399 45.992 T 11-10-2018 IPR016496 GTPase HflX GO:0005525 AMK58_17030 c228a09cd5c57d7663f0778618f2ccb0 432 Gene3D G3DSA:3.40.50.11060 15 136 8.5E-33 T 11-10-2018 AMK58_17030 c228a09cd5c57d7663f0778618f2ccb0 432 Gene3D G3DSA:3.40.50.300 197 376 5.0E-38 T 11-10-2018 AMK58_17030 c228a09cd5c57d7663f0778618f2ccb0 432 Pfam PF16360 GTP-binding GTPase Middle Region 112 191 6.5E-30 T 11-10-2018 IPR032305 GTP-binding protein, middle domain AMK58_17030 c228a09cd5c57d7663f0778618f2ccb0 432 Pfam PF01926 50S ribosome-binding GTPase 199 320 2.8E-18 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMK58_17030 c228a09cd5c57d7663f0778618f2ccb0 432 Pfam PF13167 GTP-binding GTPase N-terminal 23 109 2.6E-24 T 11-10-2018 IPR025121 GTPase HflX, N-terminal AMK58_17030 c228a09cd5c57d7663f0778618f2ccb0 432 SUPERFAMILY SSF52540 197 378 8.58E-38 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_17030 c228a09cd5c57d7663f0778618f2ccb0 432 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 220 238 1.5E-8 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMK58_17030 c228a09cd5c57d7663f0778618f2ccb0 432 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 266 284 1.5E-8 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMK58_17030 c228a09cd5c57d7663f0778618f2ccb0 432 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 199 219 1.5E-8 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMK58_17030 c228a09cd5c57d7663f0778618f2ccb0 432 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 21 369 7.7E-131 T 11-10-2018 IPR016496 GTPase HflX GO:0005525 AMK58_18340 9abee2c2eeee3b86eb17a545dce9aad9 241 SUPERFAMILY SSF53448 14 234 1.49E-46 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_18340 9abee2c2eeee3b86eb17a545dce9aad9 241 Pfam PF00483 Nucleotidyl transferase 14 204 7.6E-22 T 11-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AMK58_18340 9abee2c2eeee3b86eb17a545dce9aad9 241 Gene3D G3DSA:3.90.550.10 11 238 3.0E-46 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_10970 65b80dcfee03711862953021fe1b95f7 468 Gene3D G3DSA:3.30.830.10 49 266 1.1E-75 T 11-10-2018 AMK58_10970 65b80dcfee03711862953021fe1b95f7 468 SUPERFAMILY SSF63411 50 253 2.89E-59 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMK58_10970 65b80dcfee03711862953021fe1b95f7 468 SUPERFAMILY SSF63411 277 462 1.83E-30 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMK58_10970 65b80dcfee03711862953021fe1b95f7 468 Gene3D G3DSA:3.30.830.10 268 463 1.4E-43 T 11-10-2018 AMK58_10970 65b80dcfee03711862953021fe1b95f7 468 Pfam PF00675 Insulinase (Peptidase family M16) 60 205 3.1E-28 T 11-10-2018 IPR011765 Peptidase M16, N-terminal AMK58_10970 65b80dcfee03711862953021fe1b95f7 468 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 80 103 - T 11-10-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 AMK58_10970 65b80dcfee03711862953021fe1b95f7 468 Pfam PF05193 Peptidase M16 inactive domain 214 395 5.7E-32 T 11-10-2018 IPR007863 Peptidase M16, C-terminal AMK58_27650 5b78486d91b1f6d312bf6a748be429f4 250 Pfam PF01925 Sulfite exporter TauE/SafE 12 233 1.3E-13 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 AMK58_15110 d965252b0c78166c1c4ca16558a63ed1 372 Gene3D G3DSA:3.40.50.720 175 313 6.7E-155 T 11-10-2018 AMK58_15110 d965252b0c78166c1c4ca16558a63ed1 372 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 155 1.6E-26 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMK58_15110 d965252b0c78166c1c4ca16558a63ed1 372 SUPERFAMILY SSF50129 2 185 1.37E-74 T 11-10-2018 IPR011032 GroES-like superfamily AMK58_15110 d965252b0c78166c1c4ca16558a63ed1 372 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 3 370 1.2E-221 T 11-10-2018 IPR014183 Alcohol dehydrogenase class III GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00680+1.1.1.284|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396|MetaCyc: PWY-7798|Reactome: R-HSA-71384 AMK58_15110 d965252b0c78166c1c4ca16558a63ed1 372 SMART SM00829 13 368 0.0058 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMK58_15110 d965252b0c78166c1c4ca16558a63ed1 372 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 62 76 - T 11-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AMK58_15110 d965252b0c78166c1c4ca16558a63ed1 372 SUPERFAMILY SSF50129 320 370 2.24E-12 T 11-10-2018 IPR011032 GroES-like superfamily AMK58_15110 d965252b0c78166c1c4ca16558a63ed1 372 Pfam PF00107 Zinc-binding dehydrogenase 198 324 3.3E-25 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMK58_15110 d965252b0c78166c1c4ca16558a63ed1 372 Gene3D G3DSA:3.90.180.10 7 365 6.7E-155 T 11-10-2018 AMK58_15110 d965252b0c78166c1c4ca16558a63ed1 372 SUPERFAMILY SSF51735 161 335 4.05E-49 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_19225 83e50aadad0830ad8b76ee25bf721773 238 SUPERFAMILY SSF89260 73 168 1.15E-5 T 11-10-2018 AMK58_19225 83e50aadad0830ad8b76ee25bf721773 238 Gene3D G3DSA:2.60.120.380 54 172 3.3E-8 T 11-10-2018 AMK58_24940 6060304bea8cba90839848dcbbb1cdb1 199 Pfam PF08281 Sigma-70, region 4 132 181 5.7E-14 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMK58_24940 6060304bea8cba90839848dcbbb1cdb1 199 SUPERFAMILY SSF88946 13 116 1.57E-29 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMK58_24940 6060304bea8cba90839848dcbbb1cdb1 199 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 58 90 - T 11-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMK58_24940 6060304bea8cba90839848dcbbb1cdb1 199 SUPERFAMILY SSF88659 126 188 8.78E-14 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMK58_24940 6060304bea8cba90839848dcbbb1cdb1 199 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 32 187 4.5E-26 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMK58_24940 6060304bea8cba90839848dcbbb1cdb1 199 Gene3D G3DSA:1.10.10.10 127 189 4.3E-15 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_24940 6060304bea8cba90839848dcbbb1cdb1 199 Gene3D G3DSA:1.10.1740.10 11 126 2.9E-29 T 11-10-2018 AMK58_24940 6060304bea8cba90839848dcbbb1cdb1 199 Pfam PF04542 Sigma-70 region 2 37 103 1.2E-19 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMK58_26375 07f38433a75bba3fb773e651cfeb0166 354 Pfam PF00669 Bacterial flagellin N-terminal helical region 6 138 2.9E-11 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 AMK58_26375 07f38433a75bba3fb773e651cfeb0166 354 SUPERFAMILY SSF64518 6 354 7.59E-21 T 11-10-2018 AMK58_26375 07f38433a75bba3fb773e651cfeb0166 354 Pfam PF00700 Bacterial flagellin C-terminal helical region 273 354 3.8E-12 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 AMK58_26375 07f38433a75bba3fb773e651cfeb0166 354 Gene3D G3DSA:1.20.1330.10 47 228 8.8E-7 T 11-10-2018 AMK58_07205 d5dd79cf4d8016d05cd0eb558366cf28 252 SUPERFAMILY SSF53448 11 238 5.5E-42 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_07205 d5dd79cf4d8016d05cd0eb558366cf28 252 Gene3D G3DSA:3.90.550.10 2 241 5.2E-39 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_07205 d5dd79cf4d8016d05cd0eb558366cf28 252 Pfam PF00535 Glycosyl transferase family 2 14 179 1.1E-26 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMK58_21330 4dc815a7c9a593a67b3c5203f2972e4b 614 SMART SM00465 17 98 2.6E-17 T 11-10-2018 IPR000305 GIY-YIG endonuclease AMK58_21330 4dc815a7c9a593a67b3c5203f2972e4b 614 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 386 546 3.0E-47 T 11-10-2018 IPR001162 UvrC family homology region AMK58_21330 4dc815a7c9a593a67b3c5203f2972e4b 614 Pfam PF14520 Helix-hairpin-helix domain 563 609 1.4E-6 T 11-10-2018 AMK58_21330 4dc815a7c9a593a67b3c5203f2972e4b 614 SMART SM00278 592 611 8.4 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMK58_21330 4dc815a7c9a593a67b3c5203f2972e4b 614 SMART SM00278 560 579 87.0 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMK58_21330 4dc815a7c9a593a67b3c5203f2972e4b 614 SUPERFAMILY SSF46600 195 246 2.09E-7 T 11-10-2018 IPR036876 UVR domain superfamily AMK58_21330 4dc815a7c9a593a67b3c5203f2972e4b 614 Gene3D G3DSA:3.30.420.340 379 553 8.5E-46 T 11-10-2018 IPR038476 UvrC homology region 2 superfamily AMK58_21330 4dc815a7c9a593a67b3c5203f2972e4b 614 Pfam PF02151 UvrB/uvrC motif 219 239 9.4E-5 T 11-10-2018 IPR001943 UVR domain GO:0005515 AMK58_21330 4dc815a7c9a593a67b3c5203f2972e4b 614 Gene3D G3DSA:1.10.150.20 554 612 1.3E-16 T 11-10-2018 AMK58_21330 4dc815a7c9a593a67b3c5203f2972e4b 614 SUPERFAMILY SSF47781 525 613 1.4E-21 T 11-10-2018 IPR010994 RuvA domain 2-like AMK58_21330 4dc815a7c9a593a67b3c5203f2972e4b 614 Hamap MF_00203 UvrABC system protein C [uvrC]. 4 611 25.506 T 11-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 AMK58_21330 4dc815a7c9a593a67b3c5203f2972e4b 614 SUPERFAMILY SSF82771 17 99 5.1E-19 T 11-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 AMK58_21330 4dc815a7c9a593a67b3c5203f2972e4b 614 Pfam PF01541 GIY-YIG catalytic domain 19 90 4.9E-7 T 11-10-2018 IPR000305 GIY-YIG endonuclease AMK58_21330 4dc815a7c9a593a67b3c5203f2972e4b 614 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 10 592 7.2E-140 T 11-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 AMK58_21330 4dc815a7c9a593a67b3c5203f2972e4b 614 Gene3D G3DSA:3.40.1440.10 4 102 2.5E-28 T 11-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 AMK58_02320 77475630868f0cd86d6a535fcf5e73b3 778 SMART SM00304 174 226 4.1E-4 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_02320 77475630868f0cd86d6a535fcf5e73b3 778 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 641 761 6.1E-21 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_02320 77475630868f0cd86d6a535fcf5e73b3 778 SMART SM00387 639 762 2.4E-26 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_02320 77475630868f0cd86d6a535fcf5e73b3 778 Gene3D G3DSA:3.30.450.20 353 483 6.0E-11 T 11-10-2018 AMK58_02320 77475630868f0cd86d6a535fcf5e73b3 778 Pfam PF08447 PAS fold 257 344 5.2E-20 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 AMK58_02320 77475630868f0cd86d6a535fcf5e73b3 778 Gene3D G3DSA:2.10.70.100 304 352 6.3E-12 T 11-10-2018 AMK58_02320 77475630868f0cd86d6a535fcf5e73b3 778 SUPERFAMILY SSF55874 587 762 3.01E-32 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_02320 77475630868f0cd86d6a535fcf5e73b3 778 SMART SM00086 442 477 440.0 T 11-10-2018 IPR001610 PAC motif AMK58_02320 77475630868f0cd86d6a535fcf5e73b3 778 SMART SM00086 308 350 2.6E-7 T 11-10-2018 IPR001610 PAC motif AMK58_02320 77475630868f0cd86d6a535fcf5e73b3 778 SUPERFAMILY SSF55785 243 353 5.58E-20 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_02320 77475630868f0cd86d6a535fcf5e73b3 778 Gene3D G3DSA:3.30.565.10 596 765 7.1E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_02320 77475630868f0cd86d6a535fcf5e73b3 778 Gene3D G3DSA:3.30.450.20 229 299 1.6E-17 T 11-10-2018 AMK58_02320 77475630868f0cd86d6a535fcf5e73b3 778 SUPERFAMILY SSF55785 346 463 1.19E-11 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_02320 77475630868f0cd86d6a535fcf5e73b3 778 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 229 357 2.2E-13 T 11-10-2018 IPR000014 PAS domain AMK58_02320 77475630868f0cd86d6a535fcf5e73b3 778 Pfam PF00672 HAMP domain 179 222 6.9E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_02320 77475630868f0cd86d6a535fcf5e73b3 778 Pfam PF12860 PAS fold 368 481 4.6E-27 T 11-10-2018 AMK58_02320 77475630868f0cd86d6a535fcf5e73b3 778 Gene3D G3DSA:1.10.287.130 491 591 2.8E-18 T 11-10-2018 AMK58_02320 77475630868f0cd86d6a535fcf5e73b3 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 698 708 1.8E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_02320 77475630868f0cd86d6a535fcf5e73b3 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 711 729 1.8E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_02320 77475630868f0cd86d6a535fcf5e73b3 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 680 694 1.8E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_02320 77475630868f0cd86d6a535fcf5e73b3 778 SMART SM00091 233 301 0.0055 T 11-10-2018 IPR000014 PAS domain AMK58_02320 77475630868f0cd86d6a535fcf5e73b3 778 SMART SM00091 362 429 1.3 T 11-10-2018 IPR000014 PAS domain AMK58_09870 1c354e5b37bdc811b0343471f8936f5e 113 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 4 113 7.0E-40 T 11-10-2018 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 AMK58_09870 1c354e5b37bdc811b0343471f8936f5e 113 SUPERFAMILY SSF52833 3 113 2.15E-30 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_09870 1c354e5b37bdc811b0343471f8936f5e 113 Gene3D G3DSA:3.40.30.10 1 113 4.7E-44 T 11-10-2018 AMK58_09870 1c354e5b37bdc811b0343471f8936f5e 113 Pfam PF03960 ArsC family 61 112 2.8E-12 T 11-10-2018 IPR006660 Arsenate reductase-like AMK58_10065 08af48deb5314264c90224a3907b3403 108 Gene3D G3DSA:3.40.1690.10 13 94 3.6E-23 T 11-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal AMK58_10065 08af48deb5314264c90224a3907b3403 108 SUPERFAMILY SSF160544 15 93 2.75E-21 T 11-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal AMK58_10065 08af48deb5314264c90224a3907b3403 108 Pfam PF01312 FlhB HrpN YscU SpaS Family 16 89 1.9E-17 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AMK58_26450 59aee658a89113321fb701bcd59492df 259 Pfam PF13353 4Fe-4S single cluster domain 32 143 7.6E-16 T 11-10-2018 AMK58_26450 59aee658a89113321fb701bcd59492df 259 TIGRFAM TIGR02493 PFLA: pyruvate formate-lyase 1-activating enzyme 23 253 2.6E-91 T 11-10-2018 IPR012838 Pyruvate formate-lyase 1 activating enzyme GO:0043365|GO:0055114 AMK58_26450 59aee658a89113321fb701bcd59492df 259 SUPERFAMILY SSF102114 40 224 6.28E-26 T 11-10-2018 AMK58_26450 59aee658a89113321fb701bcd59492df 259 Pfam PF04055 Radical SAM superfamily 42 200 1.1E-21 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMK58_26450 59aee658a89113321fb701bcd59492df 259 PIRSF PIRSF000371 17 66 1.2E-12 T 11-10-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 AMK58_26450 59aee658a89113321fb701bcd59492df 259 PIRSF PIRSF000371 62 259 3.9E-37 T 11-10-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 AMK58_26450 59aee658a89113321fb701bcd59492df 259 Gene3D G3DSA:3.20.20.70 18 259 6.2E-82 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_26450 59aee658a89113321fb701bcd59492df 259 ProSitePatterns PS01087 Radical activating enzymes signature. 34 55 - T 11-10-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 AMK58_23225 0f1177c97a8f31883ef1a8ab62009da7 497 Gene3D G3DSA:3.40.309.10 267 461 2.6E-165 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMK58_23225 0f1177c97a8f31883ef1a8ab62009da7 497 Gene3D G3DSA:3.40.605.10 25 489 2.6E-165 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMK58_23225 0f1177c97a8f31883ef1a8ab62009da7 497 SUPERFAMILY SSF53720 18 495 4.84E-158 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMK58_23225 0f1177c97a8f31883ef1a8ab62009da7 497 Pfam PF00171 Aldehyde dehydrogenase family 31 492 1.6E-159 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMK58_23225 0f1177c97a8f31883ef1a8ab62009da7 497 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 262 269 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AMK58_23225 0f1177c97a8f31883ef1a8ab62009da7 497 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 291 302 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AMK58_12530 244775b6d10d33297a12bb9eef9087c8 334 TIGRFAM TIGR01650 PD_CobS: cobaltochelatase, CobS subunit 12 329 2.4E-186 T 11-10-2018 IPR006537 Cobaltochelatase subunit CobS KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376 AMK58_12530 244775b6d10d33297a12bb9eef9087c8 334 Gene3D G3DSA:3.40.50.300 57 236 1.8E-22 T 11-10-2018 AMK58_12530 244775b6d10d33297a12bb9eef9087c8 334 Pfam PF12556 Cobaltochelatase CobS subunit N terminal 16 46 2.0E-18 T 11-10-2018 IPR025865 Cobaltochelatase subunit CobS N-terminal domain KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376 AMK58_12530 244775b6d10d33297a12bb9eef9087c8 334 Pfam PF07728 AAA domain (dynein-related subfamily) 73 195 2.8E-11 T 11-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 AMK58_12530 244775b6d10d33297a12bb9eef9087c8 334 SUPERFAMILY SSF52540 60 290 1.83E-30 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_18515 b66e18f32ca8762486d7d5f70da6488f 339 Pfam PF06516 Purine nucleoside permease (NUP) 31 334 1.3E-76 T 11-10-2018 IPR009486 Purine nucleoside permease GO:0055085 AMK58_18515 b66e18f32ca8762486d7d5f70da6488f 339 SUPERFAMILY SSF53167 83 260 3.21E-7 T 11-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 AMK58_18515 b66e18f32ca8762486d7d5f70da6488f 339 Gene3D G3DSA:3.40.50.1580 69 316 2.4E-13 T 11-10-2018 AMK58_18515 b66e18f32ca8762486d7d5f70da6488f 339 PIRSF PIRSF013171 2 338 1.7E-62 T 11-10-2018 IPR009486 Purine nucleoside permease GO:0055085 AMK58_24790 d9fda92befd3e785e682f614f5bb5650 226 Gene3D G3DSA:1.20.1270.180 17 104 1.1E-6 T 11-10-2018 AMK58_24790 d9fda92befd3e785e682f614f5bb5650 226 Pfam PF07007 Lysozyme inhibitor LprI 25 88 4.7E-7 T 11-10-2018 IPR009739 Lysozyme inhibitor LprI, N-terminal AMK58_20170 eadd5e6f1a9a4e50449f06d19cc78fce 177 PIRSF PIRSF002721 37 177 2.6E-31 T 11-10-2018 IPR016364 Surface antigen, Rickettsia type AMK58_20170 eadd5e6f1a9a4e50449f06d19cc78fce 177 Pfam PF16998 17 kDa outer membrane surface antigen 88 177 4.9E-12 T 11-10-2018 IPR032635 Surface antigen domain AMK58_02575 c9ff18a3fe6f4b4d57cc857892f4cbd9 322 PIRSF PIRSF000102 1 321 2.0E-109 T 11-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AMK58_02575 c9ff18a3fe6f4b4d57cc857892f4cbd9 322 PRINTS PR00086 L-lactate dehydrogenase signature 171 184 1.5E-31 T 11-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AMK58_02575 c9ff18a3fe6f4b4d57cc857892f4cbd9 322 PRINTS PR00086 L-lactate dehydrogenase signature 29 53 1.5E-31 T 11-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AMK58_02575 c9ff18a3fe6f4b4d57cc857892f4cbd9 322 PRINTS PR00086 L-lactate dehydrogenase signature 117 137 1.5E-31 T 11-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AMK58_02575 c9ff18a3fe6f4b4d57cc857892f4cbd9 322 PRINTS PR00086 L-lactate dehydrogenase signature 5 29 1.5E-31 T 11-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AMK58_02575 c9ff18a3fe6f4b4d57cc857892f4cbd9 322 PRINTS PR00086 L-lactate dehydrogenase signature 141 159 1.5E-31 T 11-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AMK58_02575 c9ff18a3fe6f4b4d57cc857892f4cbd9 322 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 5 143 4.1E-44 T 11-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 AMK58_02575 c9ff18a3fe6f4b4d57cc857892f4cbd9 322 SUPERFAMILY SSF56327 144 312 5.19E-58 T 11-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AMK58_02575 c9ff18a3fe6f4b4d57cc857892f4cbd9 322 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 147 314 2.2E-31 T 11-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 AMK58_02575 c9ff18a3fe6f4b4d57cc857892f4cbd9 322 SUPERFAMILY SSF51735 5 144 6.64E-48 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_02575 c9ff18a3fe6f4b4d57cc857892f4cbd9 322 TIGRFAM TIGR01763 MalateDH_bact: malate dehydrogenase, NAD-dependent 3 311 3.9E-132 T 11-10-2018 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 AMK58_02575 c9ff18a3fe6f4b4d57cc857892f4cbd9 322 Gene3D G3DSA:3.90.110.10 146 320 1.8E-67 T 11-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AMK58_02575 c9ff18a3fe6f4b4d57cc857892f4cbd9 322 Gene3D G3DSA:3.40.50.720 1 145 1.8E-57 T 11-10-2018 AMK58_02575 c9ff18a3fe6f4b4d57cc857892f4cbd9 322 Hamap MF_00487 Malate dehydrogenase [mdh]. 4 313 47.094 T 11-10-2018 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 AMK58_08930 9dc3c1ba26f0d5d4b700ce330e48b3cd 240 PRINTS PR00103 cAMP-dependent protein kinase signature 89 98 5.4E-5 T 11-10-2018 AMK58_08930 9dc3c1ba26f0d5d4b700ce330e48b3cd 240 PRINTS PR00103 cAMP-dependent protein kinase signature 44 58 5.4E-5 T 11-10-2018 AMK58_08930 9dc3c1ba26f0d5d4b700ce330e48b3cd 240 PRINTS PR00103 cAMP-dependent protein kinase signature 101 112 5.4E-5 T 11-10-2018 AMK58_08930 9dc3c1ba26f0d5d4b700ce330e48b3cd 240 SUPERFAMILY SSF46785 159 236 2.3E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_08930 9dc3c1ba26f0d5d4b700ce330e48b3cd 240 SUPERFAMILY SSF51206 18 153 9.95E-38 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like AMK58_08930 9dc3c1ba26f0d5d4b700ce330e48b3cd 240 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 91 108 - T 11-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site AMK58_08930 9dc3c1ba26f0d5d4b700ce330e48b3cd 240 Pfam PF13545 Crp-like helix-turn-helix domain 162 235 2.3E-16 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMK58_08930 9dc3c1ba26f0d5d4b700ce330e48b3cd 240 SMART SM00100 23 141 9.9E-26 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_08930 9dc3c1ba26f0d5d4b700ce330e48b3cd 240 Gene3D G3DSA:1.10.10.10 160 237 2.9E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_08930 9dc3c1ba26f0d5d4b700ce330e48b3cd 240 SMART SM00419 180 228 8.5E-10 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMK58_08930 9dc3c1ba26f0d5d4b700ce330e48b3cd 240 Pfam PF00027 Cyclic nucleotide-binding domain 43 127 1.3E-24 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_08930 9dc3c1ba26f0d5d4b700ce330e48b3cd 240 Gene3D G3DSA:2.60.120.10 13 159 4.5E-43 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_04290 9ac28fa16e51412a492b67cf0dcb43ed 231 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 44 225 1.9E-9 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_04290 9ac28fa16e51412a492b67cf0dcb43ed 231 Gene3D G3DSA:1.10.3720.10 3 230 2.5E-26 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_04290 9ac28fa16e51412a492b67cf0dcb43ed 231 SUPERFAMILY SSF161098 15 223 2.49E-29 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_13240 44be622d64e124449323a47ca86c120d 425 Gene3D G3DSA:3.20.20.60 2 407 3.0E-171 T 11-10-2018 AMK58_13240 44be622d64e124449323a47ca86c120d 425 Pfam PF00463 Isocitrate lyase family 11 241 4.9E-52 T 11-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 AMK58_13240 44be622d64e124449323a47ca86c120d 425 ProSitePatterns PS00161 Isocitrate lyase signature. 181 186 - T 11-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 AMK58_13240 44be622d64e124449323a47ca86c120d 425 SUPERFAMILY SSF51621 7 424 3.27E-144 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMK58_13240 44be622d64e124449323a47ca86c120d 425 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 13 241 8.7E-98 T 11-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 AMK58_13240 44be622d64e124449323a47ca86c120d 425 PIRSF PIRSF001362 2 425 3.4E-227 T 11-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 AMK58_23015 987bd3e4524e8fe21f1fcf1d331960e6 437 Gene3D G3DSA:3.40.50.2000 234 403 2.5E-31 T 11-10-2018 AMK58_23015 987bd3e4524e8fe21f1fcf1d331960e6 437 Pfam PF00534 Glycosyl transferases group 1 233 393 4.0E-21 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 AMK58_23015 987bd3e4524e8fe21f1fcf1d331960e6 437 SUPERFAMILY SSF53756 6 419 5.5E-57 T 11-10-2018 AMK58_23015 987bd3e4524e8fe21f1fcf1d331960e6 437 Pfam PF13439 Glycosyltransferase Family 4 19 221 1.4E-14 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AMK58_08895 fc69efb54063a7d70abb5bb2502bb9ad 257 Pfam PF00459 Inositol monophosphatase family 15 249 2.8E-49 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMK58_08895 fc69efb54063a7d70abb5bb2502bb9ad 257 Hamap MF_02095 3'(2'),5'-bisphosphate nucleotidase CysQ [cysQ]. 9 257 40.89 T 11-10-2018 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ GO:0000287|GO:0006790|GO:0008441 KEGG: 00920+3.1.3.7 AMK58_08895 fc69efb54063a7d70abb5bb2502bb9ad 257 TIGRFAM TIGR01331 bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase 9 255 7.1E-87 T 11-10-2018 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ GO:0000287|GO:0006790|GO:0008441 KEGG: 00920+3.1.3.7 AMK58_08895 fc69efb54063a7d70abb5bb2502bb9ad 257 Gene3D G3DSA:3.30.540.10 7 150 6.8E-40 T 11-10-2018 AMK58_08895 fc69efb54063a7d70abb5bb2502bb9ad 257 Gene3D G3DSA:3.40.190.80 157 256 1.1E-32 T 11-10-2018 AMK58_08895 fc69efb54063a7d70abb5bb2502bb9ad 257 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 87 100 - T 11-10-2018 IPR020583 Inositol monophosphatase, metal-binding site AMK58_08895 fc69efb54063a7d70abb5bb2502bb9ad 257 PRINTS PR00377 Inositol monophosphatase superfamily signature 41 61 7.1E-12 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMK58_08895 fc69efb54063a7d70abb5bb2502bb9ad 257 PRINTS PR00377 Inositol monophosphatase superfamily signature 87 103 7.1E-12 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMK58_08895 fc69efb54063a7d70abb5bb2502bb9ad 257 PRINTS PR00377 Inositol monophosphatase superfamily signature 213 237 7.1E-12 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMK58_08895 fc69efb54063a7d70abb5bb2502bb9ad 257 PRINTS PR00377 Inositol monophosphatase superfamily signature 63 79 7.1E-12 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMK58_08895 fc69efb54063a7d70abb5bb2502bb9ad 257 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 216 230 - T 11-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 AMK58_08895 fc69efb54063a7d70abb5bb2502bb9ad 257 SUPERFAMILY SSF56655 9 253 1.03E-67 T 11-10-2018 AMK58_17545 c5bd7d3fd9051b0f3cbb0baf1b98d67a 270 SUPERFAMILY SSF56655 17 268 1.13E-59 T 11-10-2018 AMK58_17545 c5bd7d3fd9051b0f3cbb0baf1b98d67a 270 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 93 106 - T 11-10-2018 IPR020583 Inositol monophosphatase, metal-binding site AMK58_17545 c5bd7d3fd9051b0f3cbb0baf1b98d67a 270 Pfam PF00459 Inositol monophosphatase family 19 256 5.2E-45 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMK58_17545 c5bd7d3fd9051b0f3cbb0baf1b98d67a 270 Gene3D G3DSA:3.30.540.10 5 155 8.2E-38 T 11-10-2018 AMK58_17545 c5bd7d3fd9051b0f3cbb0baf1b98d67a 270 PRINTS PR00377 Inositol monophosphatase superfamily signature 93 109 8.6E-24 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMK58_17545 c5bd7d3fd9051b0f3cbb0baf1b98d67a 270 PRINTS PR00377 Inositol monophosphatase superfamily signature 216 240 8.6E-24 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMK58_17545 c5bd7d3fd9051b0f3cbb0baf1b98d67a 270 PRINTS PR00377 Inositol monophosphatase superfamily signature 142 165 8.6E-24 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMK58_17545 c5bd7d3fd9051b0f3cbb0baf1b98d67a 270 PRINTS PR00377 Inositol monophosphatase superfamily signature 66 82 8.6E-24 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMK58_17545 c5bd7d3fd9051b0f3cbb0baf1b98d67a 270 PRINTS PR00377 Inositol monophosphatase superfamily signature 44 64 8.6E-24 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMK58_17545 c5bd7d3fd9051b0f3cbb0baf1b98d67a 270 Gene3D G3DSA:3.40.190.80 156 268 2.6E-12 T 11-10-2018 AMK58_04770 afc2c39f3778d437ab9b4d9ba9e9bd75 315 Pfam PF13533 Biotin-lipoyl like 36 79 1.2E-6 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain AMK58_04770 afc2c39f3778d437ab9b4d9ba9e9bd75 315 Gene3D G3DSA:2.40.50.100 197 231 2.2E-9 T 11-10-2018 AMK58_04770 afc2c39f3778d437ab9b4d9ba9e9bd75 315 Pfam PF13437 HlyD family secretion protein 199 306 1.5E-11 T 11-10-2018 AMK58_04770 afc2c39f3778d437ab9b4d9ba9e9bd75 315 Gene3D G3DSA:1.10.287.470 169 196 2.2E-9 T 11-10-2018 AMK58_04770 afc2c39f3778d437ab9b4d9ba9e9bd75 315 Gene3D G3DSA:1.10.287.470 102 165 3.2E-6 T 11-10-2018 AMK58_04770 afc2c39f3778d437ab9b4d9ba9e9bd75 315 Gene3D G3DSA:2.40.30.170 232 277 2.2E-9 T 11-10-2018 AMK58_04770 afc2c39f3778d437ab9b4d9ba9e9bd75 315 Gene3D G3DSA:2.40.50.100 35 101 4.7E-8 T 11-10-2018 AMK58_04770 afc2c39f3778d437ab9b4d9ba9e9bd75 315 SUPERFAMILY SSF111369 34 89 1.31E-6 T 11-10-2018 AMK58_08595 054555f835e7e2fd5655c6bb7453e78c 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 2.5E-30 T 11-10-2018 AMK58_08595 054555f835e7e2fd5655c6bb7453e78c 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 169 187 2.5E-30 T 11-10-2018 AMK58_08595 054555f835e7e2fd5655c6bb7453e78c 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 282 304 2.5E-30 T 11-10-2018 AMK58_08595 054555f835e7e2fd5655c6bb7453e78c 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 253 269 2.5E-30 T 11-10-2018 AMK58_08595 054555f835e7e2fd5655c6bb7453e78c 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 132 150 2.5E-30 T 11-10-2018 AMK58_08595 054555f835e7e2fd5655c6bb7453e78c 450 TIGRFAM TIGR01424 gluta_reduc_2: glutathione-disulfide reductase 4 446 1.1E-195 T 11-10-2018 IPR006324 Glutathione-disulphide reductase GO:0004362|GO:0006749|GO:0050660|GO:0050661|GO:0055114 KEGG: 00480+1.8.1.7|MetaCyc: PWY-4081 AMK58_08595 054555f835e7e2fd5655c6bb7453e78c 450 Gene3D G3DSA:3.50.50.60 6 320 7.5E-114 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_08595 054555f835e7e2fd5655c6bb7453e78c 450 SUPERFAMILY SSF51905 5 361 6.48E-56 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_08595 054555f835e7e2fd5655c6bb7453e78c 450 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 40 50 - T 11-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 AMK58_08595 054555f835e7e2fd5655c6bb7453e78c 450 Gene3D G3DSA:3.30.390.30 336 450 1.1E-42 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMK58_08595 054555f835e7e2fd5655c6bb7453e78c 450 PIRSF PIRSF000350 2 445 8.1E-88 T 11-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 AMK58_08595 054555f835e7e2fd5655c6bb7453e78c 450 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 317 1.4E-68 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMK58_08595 054555f835e7e2fd5655c6bb7453e78c 450 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 337 445 1.4E-32 T 11-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMK58_08595 054555f835e7e2fd5655c6bb7453e78c 450 Gene3D G3DSA:3.50.50.60 144 260 7.5E-114 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_08595 054555f835e7e2fd5655c6bb7453e78c 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 420 440 9.2E-66 T 11-10-2018 AMK58_08595 054555f835e7e2fd5655c6bb7453e78c 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 169 194 9.2E-66 T 11-10-2018 AMK58_08595 054555f835e7e2fd5655c6bb7453e78c 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 333 354 9.2E-66 T 11-10-2018 AMK58_08595 054555f835e7e2fd5655c6bb7453e78c 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 39 54 9.2E-66 T 11-10-2018 AMK58_08595 054555f835e7e2fd5655c6bb7453e78c 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 135 144 9.2E-66 T 11-10-2018 AMK58_08595 054555f835e7e2fd5655c6bb7453e78c 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 9.2E-66 T 11-10-2018 AMK58_08595 054555f835e7e2fd5655c6bb7453e78c 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 297 304 9.2E-66 T 11-10-2018 AMK58_08595 054555f835e7e2fd5655c6bb7453e78c 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 254 268 9.2E-66 T 11-10-2018 AMK58_08595 054555f835e7e2fd5655c6bb7453e78c 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 398 413 9.2E-66 T 11-10-2018 AMK58_08595 054555f835e7e2fd5655c6bb7453e78c 450 SUPERFAMILY SSF55424 334 447 1.51E-34 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMK58_18510 3cb2840d2e334d5f5a83b58dd10560a4 185 Pfam PF08445 FR47-like protein 89 149 7.0E-13 T 11-10-2018 IPR013653 FR47-like GO:0016747 AMK58_18510 3cb2840d2e334d5f5a83b58dd10560a4 185 SUPERFAMILY SSF55729 1 154 1.17E-24 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_18510 3cb2840d2e334d5f5a83b58dd10560a4 185 Gene3D G3DSA:3.40.630.30 6 173 2.1E-38 T 11-10-2018 AMK58_12425 49a318d35c8328c5de4b4e7cf7fb4404 579 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 5 574 22.459 T 11-10-2018 IPR019998 Membrane insertase YidC GO:0016021|GO:0032977 AMK58_12425 49a318d35c8328c5de4b4e7cf7fb4404 579 PRINTS PR00701 60kDa inner membrane protein signature 345 365 2.3E-21 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMK58_12425 49a318d35c8328c5de4b4e7cf7fb4404 579 PRINTS PR00701 60kDa inner membrane protein signature 436 459 2.3E-21 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMK58_12425 49a318d35c8328c5de4b4e7cf7fb4404 579 PRINTS PR00701 60kDa inner membrane protein signature 2 23 2.3E-21 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMK58_12425 49a318d35c8328c5de4b4e7cf7fb4404 579 PRINTS PR00701 60kDa inner membrane protein signature 92 113 2.3E-21 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMK58_12425 49a318d35c8328c5de4b4e7cf7fb4404 579 PRINTS PR00701 60kDa inner membrane protein signature 264 279 2.3E-21 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMK58_12425 49a318d35c8328c5de4b4e7cf7fb4404 579 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 4 372 9.3E-96 T 11-10-2018 IPR028053 Membrane insertase YidC, N-terminal AMK58_12425 49a318d35c8328c5de4b4e7cf7fb4404 579 Pfam PF02096 60Kd inner membrane protein 375 572 2.1E-60 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMK58_12425 49a318d35c8328c5de4b4e7cf7fb4404 579 Pfam PF14849 YidC periplasmic domain 86 363 8.0E-82 T 11-10-2018 IPR038210 Membrane insertase YidC, periplasmic domain AMK58_12425 49a318d35c8328c5de4b4e7cf7fb4404 579 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 374 572 6.3E-70 T 11-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_12425 49a318d35c8328c5de4b4e7cf7fb4404 579 Gene3D G3DSA:2.70.98.90 82 353 5.0E-38 T 11-10-2018 IPR038221 YidC, periplasmic domain superfamily AMK58_12425 49a318d35c8328c5de4b4e7cf7fb4404 579 PRINTS PR01900 YidC translocation/secretion protein signature 360 376 9.8E-22 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMK58_12425 49a318d35c8328c5de4b4e7cf7fb4404 579 PRINTS PR01900 YidC translocation/secretion protein signature 508 523 9.8E-22 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMK58_12425 49a318d35c8328c5de4b4e7cf7fb4404 579 PRINTS PR01900 YidC translocation/secretion protein signature 527 551 9.8E-22 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMK58_08945 cefa5b819b37c58ec51fbca30fccbc61 405 Pfam PF14326 Domain of unknown function (DUF4384) 276 344 2.0E-9 T 11-10-2018 IPR025493 Domain of unknown function DUF4384 AMK58_28530 0599730c3bd0aff5a661ca8f68a14c0e 173 Gene3D G3DSA:2.60.40.2480 20 173 1.1E-63 T 11-10-2018 IPR038482 Periplasmic metal-binding protein tp34-type superfamily AMK58_28530 0599730c3bd0aff5a661ca8f68a14c0e 173 PIRSF PIRSF017018 1 173 9.6E-71 T 11-10-2018 IPR018470 Periplasmic metal-binding protein Tp34-type AMK58_28530 0599730c3bd0aff5a661ca8f68a14c0e 173 Pfam PF10634 Fe2+ transport protein 20 165 6.0E-62 T 11-10-2018 IPR018470 Periplasmic metal-binding protein Tp34-type AMK58_23535 e03669444a2f020d62516ffaf9e6cb06 562 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 394 546 8.7E-23 T 11-10-2018 IPR006512 YidE/YbjL duplication AMK58_23535 e03669444a2f020d62516ffaf9e6cb06 562 TIGRFAM TIGR03802 Asp_Ala_antiprt: aspartate-alanine antiporter 3 562 7.9E-227 T 11-10-2018 IPR022457 Aspartate-alanine antiporter GO:0005215|GO:0016020 AMK58_23535 e03669444a2f020d62516ffaf9e6cb06 562 Pfam PF06826 Predicted Permease Membrane Region 15 178 1.4E-31 T 11-10-2018 IPR006512 YidE/YbjL duplication AMK58_23535 e03669444a2f020d62516ffaf9e6cb06 562 Pfam PF06826 Predicted Permease Membrane Region 392 558 1.7E-32 T 11-10-2018 IPR006512 YidE/YbjL duplication AMK58_23535 e03669444a2f020d62516ffaf9e6cb06 562 SUPERFAMILY SSF116726 306 377 2.75E-9 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 AMK58_23535 e03669444a2f020d62516ffaf9e6cb06 562 Pfam PF02080 TrkA-C domain 305 374 9.8E-11 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AMK58_23535 e03669444a2f020d62516ffaf9e6cb06 562 Gene3D G3DSA:3.30.70.1450 223 292 3.9E-5 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 AMK58_23535 e03669444a2f020d62516ffaf9e6cb06 562 Gene3D G3DSA:3.30.70.1450 306 380 1.1E-7 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 AMK58_23535 e03669444a2f020d62516ffaf9e6cb06 562 SUPERFAMILY SSF116726 228 290 1.28E-6 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 AMK58_09330 f324a87099a6b86ea9624ed2f24cf8e8 147 Gene3D G3DSA:3.20.20.70 2 109 6.3E-7 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_11125 e329b7d1090a8785ac6da25429e09b57 505 Pfam PF01593 Flavin containing amine oxidoreductase 23 492 1.0E-21 T 11-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 AMK58_11125 e329b7d1090a8785ac6da25429e09b57 505 SUPERFAMILY SSF51905 14 493 6.64E-52 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_11125 e329b7d1090a8785ac6da25429e09b57 505 Gene3D G3DSA:3.50.50.60 14 131 1.8E-19 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_11125 e329b7d1090a8785ac6da25429e09b57 505 Gene3D G3DSA:3.50.50.60 226 341 5.6E-16 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_27385 379ec81153aa32e9d4256925e1080089 308 SUPERFAMILY SSF51569 6 302 9.52E-65 T 11-10-2018 AMK58_27385 379ec81153aa32e9d4256925e1080089 308 Gene3D G3DSA:3.20.20.70 2 308 2.6E-105 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_27385 379ec81153aa32e9d4256925e1080089 308 PIRSF PIRSF001365 4 307 1.1E-48 T 11-10-2018 IPR002220 DapA-like GO:0016829 AMK58_27385 379ec81153aa32e9d4256925e1080089 308 Pfam PF00701 Dihydrodipicolinate synthetase family 9 283 4.6E-28 T 11-10-2018 IPR002220 DapA-like GO:0016829 AMK58_27385 379ec81153aa32e9d4256925e1080089 308 SMART SM01130 7 300 1.1E-59 T 11-10-2018 IPR002220 DapA-like GO:0016829 AMK58_24430 b3b84bab344f6a8910c216cdd51e4bbe 361 Pfam PF00571 CBS domain 298 344 3.1E-7 T 11-10-2018 IPR000644 CBS domain AMK58_24430 b3b84bab344f6a8910c216cdd51e4bbe 361 Pfam PF00571 CBS domain 233 288 5.6E-10 T 11-10-2018 IPR000644 CBS domain AMK58_24430 b3b84bab344f6a8910c216cdd51e4bbe 361 Pfam PF02163 Peptidase family M50 130 191 6.7E-8 T 11-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 AMK58_24430 b3b84bab344f6a8910c216cdd51e4bbe 361 SUPERFAMILY SSF54631 230 346 4.48E-24 T 11-10-2018 AMK58_24430 b3b84bab344f6a8910c216cdd51e4bbe 361 Gene3D G3DSA:3.10.580.10 288 350 8.4E-9 T 11-10-2018 AMK58_24430 b3b84bab344f6a8910c216cdd51e4bbe 361 Pfam PF02163 Peptidase family M50 47 118 3.1E-10 T 11-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 AMK58_24430 b3b84bab344f6a8910c216cdd51e4bbe 361 Gene3D G3DSA:3.10.580.10 212 287 6.4E-11 T 11-10-2018 AMK58_24430 b3b84bab344f6a8910c216cdd51e4bbe 361 SMART SM00116 303 351 7.3 T 11-10-2018 IPR000644 CBS domain AMK58_24430 b3b84bab344f6a8910c216cdd51e4bbe 361 SMART SM00116 240 288 8.1E-6 T 11-10-2018 IPR000644 CBS domain AMK58_24430 b3b84bab344f6a8910c216cdd51e4bbe 361 PIRSF PIRSF006404 1 359 4.0E-116 T 11-10-2018 IPR016483 Uncharacterised conserved protein UCP006404, peptidase M50/CBS AMK58_12110 08fa834b76379c1aa7687a1e0145c441 466 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 265 302 - T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMK58_12110 08fa834b76379c1aa7687a1e0145c441 466 PIRSF PIRSF000521 32 460 1.6E-30 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMK58_12110 08fa834b76379c1aa7687a1e0145c441 466 Gene3D G3DSA:3.40.640.10 76 355 9.6E-171 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_12110 08fa834b76379c1aa7687a1e0145c441 466 SUPERFAMILY SSF53383 22 458 1.14E-121 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_12110 08fa834b76379c1aa7687a1e0145c441 466 Pfam PF00202 Aminotransferase class-III 38 457 4.9E-95 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMK58_12110 08fa834b76379c1aa7687a1e0145c441 466 Gene3D G3DSA:3.90.1150.10 22 458 9.6E-171 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_22485 0662113761cae4611a6554f5d2d3b446 164 SUPERFAMILY SSF54637 17 163 1.53E-41 T 11-10-2018 IPR029069 HotDog domain superfamily AMK58_22485 0662113761cae4611a6554f5d2d3b446 164 Pfam PF13279 Thioesterase-like superfamily 22 139 1.8E-20 T 11-10-2018 AMK58_22485 0662113761cae4611a6554f5d2d3b446 164 Gene3D G3DSA:3.10.129.10 12 147 2.3E-36 T 11-10-2018 AMK58_11415 d5e0f0030aec66ab804b65d7dcfc9b42 80 Pfam PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase 2 78 1.2E-35 T 11-10-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 AMK58_11415 d5e0f0030aec66ab804b65d7dcfc9b42 80 SUPERFAMILY SSF82697 1 78 3.31E-30 T 11-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMK58_11415 d5e0f0030aec66ab804b65d7dcfc9b42 80 TIGRFAM TIGR00302 TIGR00302: phosphoribosylformylglycinamidine synthase, purS protein 1 78 5.1E-33 T 11-10-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 AMK58_11415 d5e0f0030aec66ab804b65d7dcfc9b42 80 ProDom PD010362 PHOSPHORIBOSYLFORMYLGLYCINAMIDINE PURS SYNTHETASE SYNTHASE COMPONENT SYNTHASE LIGASE FGAM UPF0062 I 9 78 1.0E-20 T 11-10-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 AMK58_11415 d5e0f0030aec66ab804b65d7dcfc9b42 80 Hamap MF_01926 Phosphoribosylformylglycinamidine synthase subunit PurS [purS]. 1 78 23.347 T 11-10-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 AMK58_11415 d5e0f0030aec66ab804b65d7dcfc9b42 80 Gene3D G3DSA:3.30.1280.10 1 80 1.1E-34 T 11-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMK58_08990 4a04905259fcd9f2ef6ef65e56329bd9 181 Gene3D G3DSA:1.10.10.10 14 171 1.1E-16 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_08990 4a04905259fcd9f2ef6ef65e56329bd9 181 ProSitePatterns PS01117 MarR-type HTH domain signature. 94 128 - T 11-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site AMK58_08990 4a04905259fcd9f2ef6ef65e56329bd9 181 SMART SM00347 56 155 3.3E-10 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_08990 4a04905259fcd9f2ef6ef65e56329bd9 181 SUPERFAMILY SSF46785 29 171 3.2E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_08990 4a04905259fcd9f2ef6ef65e56329bd9 181 Pfam PF12802 MarR family 62 118 7.8E-11 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_03600 c86ce959b804518042474e67d70e4b5a 648 PIRSF PIRSF000549 1 648 3.1E-285 T 11-10-2018 IPR016230 Serine-protein kinase, PrkA GO:0004672 AMK58_03600 c86ce959b804518042474e67d70e4b5a 648 SUPERFAMILY SSF52540 79 353 2.4E-18 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_03600 c86ce959b804518042474e67d70e4b5a 648 SMART SM00763 23 384 7.0E-204 T 11-10-2018 IPR013153 PrkA AAA domain AMK58_03600 c86ce959b804518042474e67d70e4b5a 648 Pfam PF06798 PrkA serine protein kinase C-terminal domain 387 640 2.8E-75 T 11-10-2018 IPR010650 PrkA C-terminal domain AMK58_03600 c86ce959b804518042474e67d70e4b5a 648 Pfam PF08298 PrkA AAA domain 23 383 5.0E-176 T 11-10-2018 IPR013153 PrkA AAA domain AMK58_11755 245b09416e058c82ca8479212d39e61d 509 Gene3D G3DSA:3.40.50.300 94 379 1.0E-131 T 11-10-2018 AMK58_11755 245b09416e058c82ca8479212d39e61d 509 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 509 51.647 T 11-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_11755 245b09416e058c82ca8479212d39e61d 509 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 25 92 2.3E-16 T 11-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMK58_11755 245b09416e058c82ca8479212d39e61d 509 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 379 504 3.1E-48 T 11-10-2018 IPR000793 ATP synthase, alpha subunit, C-terminal GO:0015986 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_11755 245b09416e058c82ca8479212d39e61d 509 SUPERFAMILY SSF47917 380 508 1.67E-46 T 11-10-2018 AMK58_11755 245b09416e058c82ca8479212d39e61d 509 Gene3D G3DSA:2.40.30.20 1 93 6.0E-40 T 11-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMK58_11755 245b09416e058c82ca8479212d39e61d 509 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 372 1.4E-72 T 11-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMK58_11755 245b09416e058c82ca8479212d39e61d 509 SUPERFAMILY SSF50615 10 94 6.8E-30 T 11-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMK58_11755 245b09416e058c82ca8479212d39e61d 509 PIRSF PIRSF039088 1 509 4.0E-284 T 11-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_11755 245b09416e058c82ca8479212d39e61d 509 SUPERFAMILY SSF52540 96 378 8.35E-102 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_11755 245b09416e058c82ca8479212d39e61d 509 Gene3D G3DSA:1.20.150.20 380 509 2.1E-53 T 11-10-2018 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_11755 245b09416e058c82ca8479212d39e61d 509 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 363 372 - T 11-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMK58_11755 245b09416e058c82ca8479212d39e61d 509 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 3 508 2.1E-253 T 11-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_06585 774ca6e40745ec5528920d66269bea46 221 Pfam PF00574 Clp protease 86 163 9.6E-6 T 11-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA AMK58_06585 774ca6e40745ec5528920d66269bea46 221 SUPERFAMILY SSF52096 57 177 9.94E-14 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMK58_06585 774ca6e40745ec5528920d66269bea46 221 Gene3D G3DSA:3.90.226.10 51 208 4.6E-13 T 11-10-2018 AMK58_06960 dad284cec408bd924364b6955d1515b7 265 PIRSF PIRSF006241 1 259 4.0E-95 T 11-10-2018 IPR026040 Hydroxypyruvate isomerase-like AMK58_06960 dad284cec408bd924364b6955d1515b7 265 Gene3D G3DSA:3.20.20.150 1 259 9.3E-82 T 11-10-2018 AMK58_06960 dad284cec408bd924364b6955d1515b7 265 TIGRFAM TIGR03234 OH-pyruv-isom: hydroxypyruvate isomerase 2 254 8.8E-119 T 11-10-2018 IPR017643 Hydroxypyruvate isomerase KEGG: 00630+5.3.1.22 AMK58_06960 dad284cec408bd924364b6955d1515b7 265 Pfam PF01261 Xylose isomerase-like TIM barrel 21 219 6.9E-34 T 11-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AMK58_06960 dad284cec408bd924364b6955d1515b7 265 SUPERFAMILY SSF51658 1 256 4.19E-89 T 11-10-2018 IPR036237 Xylose isomerase-like superfamily AMK58_13930 54f80d7eccb8c346597ad4b677d02276 162 Gene3D G3DSA:3.40.930.10 1 150 1.7E-39 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 AMK58_13930 54f80d7eccb8c346597ad4b677d02276 162 SUPERFAMILY SSF55804 1 146 7.98E-31 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 AMK58_13930 54f80d7eccb8c346597ad4b677d02276 162 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 6 147 1.4E-28 T 11-10-2018 IPR002178 PTS EIIA type-2 domain AMK58_09300 9f0b9c8424bd42b9d49cec14bd3f1a8f 202 Gene3D G3DSA:3.40.50.10420 6 202 1.4E-42 T 11-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily AMK58_09300 9f0b9c8424bd42b9d49cec14bd3f1a8f 202 SUPERFAMILY SSF100950 8 200 8.93E-41 T 11-10-2018 IPR037171 NagB/RpiA transferase-like AMK58_09300 9f0b9c8424bd42b9d49cec14bd3f1a8f 202 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 8 194 5.4E-39 T 11-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase AMK58_09300 9f0b9c8424bd42b9d49cec14bd3f1a8f 202 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 8 194 1.2E-24 T 11-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase AMK58_09300 9f0b9c8424bd42b9d49cec14bd3f1a8f 202 PIRSF PIRSF006806 4 197 6.1E-26 T 11-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase AMK58_08450 7841f5c78a509b6950a1b9be337c90c9 235 SUPERFAMILY SSF51206 10 148 3.27E-27 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like AMK58_08450 7841f5c78a509b6950a1b9be337c90c9 235 SUPERFAMILY SSF46785 152 229 5.71E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_08450 7841f5c78a509b6950a1b9be337c90c9 235 SMART SM00419 175 220 8.1E-8 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMK58_08450 7841f5c78a509b6950a1b9be337c90c9 235 Pfam PF13545 Crp-like helix-turn-helix domain 155 227 1.1E-12 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMK58_08450 7841f5c78a509b6950a1b9be337c90c9 235 SMART SM00100 15 137 7.2E-10 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_08450 7841f5c78a509b6950a1b9be337c90c9 235 Gene3D G3DSA:2.60.120.10 8 152 2.4E-28 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_08450 7841f5c78a509b6950a1b9be337c90c9 235 Gene3D G3DSA:1.10.10.10 153 232 1.5E-14 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_08450 7841f5c78a509b6950a1b9be337c90c9 235 Pfam PF00027 Cyclic nucleotide-binding domain 34 120 1.2E-13 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_07960 ed568305cf3617dc0ef4731ffdd1a674 627 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 397 557 9.4E-51 T 11-10-2018 IPR001162 UvrC family homology region AMK58_07960 ed568305cf3617dc0ef4731ffdd1a674 627 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 23 601 1.8E-165 T 11-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 AMK58_07960 ed568305cf3617dc0ef4731ffdd1a674 627 SUPERFAMILY SSF47781 540 625 9.21E-23 T 11-10-2018 IPR010994 RuvA domain 2-like AMK58_07960 ed568305cf3617dc0ef4731ffdd1a674 627 Gene3D G3DSA:3.30.420.340 389 564 1.6E-48 T 11-10-2018 IPR038476 UvrC homology region 2 superfamily AMK58_07960 ed568305cf3617dc0ef4731ffdd1a674 627 SUPERFAMILY SSF82771 31 114 2.62E-18 T 11-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 AMK58_07960 ed568305cf3617dc0ef4731ffdd1a674 627 Gene3D G3DSA:1.10.150.20 565 623 1.0E-18 T 11-10-2018 AMK58_07960 ed568305cf3617dc0ef4731ffdd1a674 627 Pfam PF01541 GIY-YIG catalytic domain 33 107 8.3E-7 T 11-10-2018 IPR000305 GIY-YIG endonuclease AMK58_07960 ed568305cf3617dc0ef4731ffdd1a674 627 SUPERFAMILY SSF46600 205 257 1.96E-12 T 11-10-2018 IPR036876 UVR domain superfamily AMK58_07960 ed568305cf3617dc0ef4731ffdd1a674 627 Pfam PF12826 Helix-hairpin-helix motif 576 626 1.1E-6 T 11-10-2018 AMK58_07960 ed568305cf3617dc0ef4731ffdd1a674 627 SMART SM00465 31 112 5.0E-15 T 11-10-2018 IPR000305 GIY-YIG endonuclease AMK58_07960 ed568305cf3617dc0ef4731ffdd1a674 627 SMART SM00278 571 590 64.0 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMK58_07960 ed568305cf3617dc0ef4731ffdd1a674 627 SMART SM00278 603 622 0.73 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMK58_07960 ed568305cf3617dc0ef4731ffdd1a674 627 Gene3D G3DSA:3.40.1440.10 18 116 3.7E-30 T 11-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 AMK58_07960 ed568305cf3617dc0ef4731ffdd1a674 627 Pfam PF02151 UvrB/uvrC motif 226 250 2.8E-9 T 11-10-2018 IPR001943 UVR domain GO:0005515 AMK58_07960 ed568305cf3617dc0ef4731ffdd1a674 627 Hamap MF_00203 UvrABC system protein C [uvrC]. 18 622 27.064 T 11-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 AMK58_04470 fbb0b11191b4cce1b79376e4b59d84d0 133 Pfam PF01329 Pterin 4 alpha carbinolamine dehydratase 21 109 1.5E-26 T 11-10-2018 IPR001533 Pterin 4 alpha carbinolamine dehydratase GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 AMK58_04470 fbb0b11191b4cce1b79376e4b59d84d0 133 Gene3D G3DSA:3.30.1360.20 22 117 1.8E-26 T 11-10-2018 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 AMK58_04470 fbb0b11191b4cce1b79376e4b59d84d0 133 SUPERFAMILY SSF55248 21 113 1.77E-28 T 11-10-2018 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 AMK58_24875 dd5451795a534fa43aba161972a492d6 2077 Gene3D G3DSA:2.160.20.10 83 471 3.3E-95 T 11-10-2018 IPR012334 Pectin lyase fold AMK58_24875 dd5451795a534fa43aba161972a492d6 2077 Pfam PF05860 haemagglutination activity domain 84 193 4.8E-25 T 11-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal AMK58_24875 dd5451795a534fa43aba161972a492d6 2077 SMART SM00912 80 193 9.0E-43 T 11-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal AMK58_24875 dd5451795a534fa43aba161972a492d6 2077 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 115 190 4.9E-25 T 11-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal AMK58_24875 dd5451795a534fa43aba161972a492d6 2077 SUPERFAMILY SSF51126 98 386 4.71E-46 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor AMK58_27515 7428af14708ec4539ee444e9665dd5ba 386 SUPERFAMILY SSF50952 38 384 3.27E-51 T 11-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 AMK58_27515 7428af14708ec4539ee444e9665dd5ba 386 Gene3D G3DSA:2.120.10.30 30 383 2.9E-134 T 11-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like AMK58_27515 7428af14708ec4539ee444e9665dd5ba 386 Pfam PF07995 Glucose / Sorbosone dehydrogenase 45 379 5.3E-145 T 11-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase AMK58_10705 7f66ee937a7961c8630f620d5228280a 836 Gene3D G3DSA:3.90.1310.20 53 295 1.4E-84 T 11-10-2018 AMK58_10705 7f66ee937a7961c8630f620d5228280a 836 Gene3D G3DSA:3.40.710.10 296 311 1.4E-84 T 11-10-2018 AMK58_10705 7f66ee937a7961c8630f620d5228280a 836 SUPERFAMILY SSF53955 42 257 1.41E-71 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily AMK58_10705 7f66ee937a7961c8630f620d5228280a 836 SUPERFAMILY SSF56601 214 782 1.31E-132 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMK58_10705 7f66ee937a7961c8630f620d5228280a 836 Gene3D G3DSA:2.40.50.140 324 415 7.3E-12 T 11-10-2018 AMK58_10705 7f66ee937a7961c8630f620d5228280a 836 Gene3D G3DSA:1.10.3810.10 65 258 1.4E-84 T 11-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMK58_10705 7f66ee937a7961c8630f620d5228280a 836 Pfam PF17092 Penicillin-binding protein OB-like domain 320 436 9.6E-22 T 11-10-2018 IPR031376 Penicillin-binding protein, OB-like domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMK58_10705 7f66ee937a7961c8630f620d5228280a 836 Pfam PF00912 Transglycosylase 55 232 1.7E-60 T 11-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMK58_10705 7f66ee937a7961c8630f620d5228280a 836 Pfam PF00905 Penicillin binding protein transpeptidase domain 438 732 6.3E-35 T 11-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AMK58_10705 7f66ee937a7961c8630f620d5228280a 836 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 65 736 1.2E-185 T 11-10-2018 AMK58_10705 7f66ee937a7961c8630f620d5228280a 836 Gene3D G3DSA:3.40.710.10 416 777 1.7E-109 T 11-10-2018 AMK58_06250 ae2b7383a13557c03a67b4bd6e50d8d5 1160 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 6 1040 0.0 T 11-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMK58_06250 ae2b7383a13557c03a67b4bd6e50d8d5 1160 SMART SM00481 7 74 4.2E-19 T 11-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal AMK58_06250 ae2b7383a13557c03a67b4bd6e50d8d5 1160 Pfam PF02811 PHP domain 8 184 2.3E-36 T 11-10-2018 IPR004013 PHP domain GO:0003824 AMK58_06250 ae2b7383a13557c03a67b4bd6e50d8d5 1160 Gene3D G3DSA:3.20.20.140 1 282 1.9E-81 T 11-10-2018 AMK58_06250 ae2b7383a13557c03a67b4bd6e50d8d5 1160 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 305 739 6.1E-168 T 11-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMK58_06250 ae2b7383a13557c03a67b4bd6e50d8d5 1160 SUPERFAMILY SSF160975 842 892 5.1E-6 T 11-10-2018 AMK58_06250 ae2b7383a13557c03a67b4bd6e50d8d5 1160 SUPERFAMILY SSF89550 6 276 1.96E-12 T 11-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 AMK58_06250 ae2b7383a13557c03a67b4bd6e50d8d5 1160 Pfam PF14579 Helix-hairpin-helix motif 814 906 1.7E-25 T 11-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMK58_06250 ae2b7383a13557c03a67b4bd6e50d8d5 1160 Gene3D G3DSA:1.10.10.1600 451 530 1.2E-25 T 11-10-2018 AMK58_22825 187cba63938dfab415d4ef0e6ec61ed9 419 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 34 159 1.2E-49 T 11-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AMK58_22825 187cba63938dfab415d4ef0e6ec61ed9 419 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 89 103 2.2E-32 T 11-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AMK58_22825 187cba63938dfab415d4ef0e6ec61ed9 419 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 340 351 2.2E-32 T 11-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AMK58_22825 187cba63938dfab415d4ef0e6ec61ed9 419 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 169 191 2.2E-32 T 11-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AMK58_22825 187cba63938dfab415d4ef0e6ec61ed9 419 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 211 231 2.2E-32 T 11-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AMK58_22825 187cba63938dfab415d4ef0e6ec61ed9 419 Gene3D G3DSA:3.40.50.720 178 415 2.1E-80 T 11-10-2018 AMK58_22825 187cba63938dfab415d4ef0e6ec61ed9 419 SUPERFAMILY SSF51735 178 413 1.55E-64 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_22825 187cba63938dfab415d4ef0e6ec61ed9 419 SMART SM00839 180 412 1.6E-76 T 11-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AMK58_22825 187cba63938dfab415d4ef0e6ec61ed9 419 PIRSF PIRSF000185 2 415 2.8E-157 T 11-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 AMK58_22825 187cba63938dfab415d4ef0e6ec61ed9 419 SUPERFAMILY SSF53223 4 180 4.16E-62 T 11-10-2018 AMK58_22825 187cba63938dfab415d4ef0e6ec61ed9 419 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 178 412 5.2E-65 T 11-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AMK58_22825 187cba63938dfab415d4ef0e6ec61ed9 419 Gene3D G3DSA:3.40.50.10860 34 177 2.0E-57 T 11-10-2018 AMK58_17140 cb8e0af012332a37bc871fbc22fa2d89 161 Pfam PF02152 Dihydroneopterin aldolase 63 153 7.2E-6 T 11-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AMK58_17140 cb8e0af012332a37bc871fbc22fa2d89 161 Gene3D G3DSA:3.30.1130.10 42 161 1.9E-15 T 11-10-2018 AMK58_17140 cb8e0af012332a37bc871fbc22fa2d89 161 SUPERFAMILY SSF55620 65 157 2.28E-10 T 11-10-2018 AMK58_00745 832f39fde8e2c2ee4f6e8b2e8b730e55 161 SUPERFAMILY SSF74942 84 152 5.23E-17 T 11-10-2018 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily AMK58_00745 832f39fde8e2c2ee4f6e8b2e8b730e55 161 Pfam PF17384 RimP C-terminal SH3 domain 86 150 8.1E-13 T 11-10-2018 IPR028998 Ribosome maturation factor RimP, C-terminal AMK58_00745 832f39fde8e2c2ee4f6e8b2e8b730e55 161 Pfam PF02576 RimP N-terminal domain 10 83 2.9E-26 T 11-10-2018 IPR028989 Ribosome maturation factor RimP, N-terminal AMK58_00745 832f39fde8e2c2ee4f6e8b2e8b730e55 161 Gene3D G3DSA:3.30.300.70 2 80 1.5E-19 T 11-10-2018 IPR035956 RimP, N-terminal domain superfamily AMK58_00745 832f39fde8e2c2ee4f6e8b2e8b730e55 161 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 5 151 23.78 T 11-10-2018 IPR003728 Ribosome maturation factor RimP GO:0042274 AMK58_00745 832f39fde8e2c2ee4f6e8b2e8b730e55 161 SUPERFAMILY SSF75420 4 83 2.09E-22 T 11-10-2018 IPR035956 RimP, N-terminal domain superfamily AMK58_15805 09b6d28b3de846d75bf135ad7e5e5be0 68 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 4.5E-22 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_15805 09b6d28b3de846d75bf135ad7e5e5be0 68 PRINTS PR00050 Cold shock protein signature 25 34 5.5E-11 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_15805 09b6d28b3de846d75bf135ad7e5e5be0 68 PRINTS PR00050 Cold shock protein signature 39 57 5.5E-11 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_15805 09b6d28b3de846d75bf135ad7e5e5be0 68 PRINTS PR00050 Cold shock protein signature 4 19 5.5E-11 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_15805 09b6d28b3de846d75bf135ad7e5e5be0 68 SMART SM00357 3 68 2.3E-19 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 AMK58_15805 09b6d28b3de846d75bf135ad7e5e5be0 68 Gene3D G3DSA:2.40.50.140 1 68 3.7E-23 T 11-10-2018 AMK58_15805 09b6d28b3de846d75bf135ad7e5e5be0 68 SUPERFAMILY SSF50249 1 61 2.29E-20 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_15805 09b6d28b3de846d75bf135ad7e5e5be0 68 PIRSF PIRSF002599 1 68 1.4E-20 T 11-10-2018 IPR012156 Cold shock, CspA GO:0003676 AMK58_15805 09b6d28b3de846d75bf135ad7e5e5be0 68 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 11-10-2018 IPR019844 Cold-shock conserved site AMK58_04750 65f521fc1760b40999312ee53973ac7e 296 SMART SM00044 1 139 1.1E-4 T 11-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMK58_04750 65f521fc1760b40999312ee53973ac7e 296 SUPERFAMILY SSF55073 3 165 2.04E-41 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_04750 65f521fc1760b40999312ee53973ac7e 296 SUPERFAMILY SSF49879 190 253 2.3E-15 T 11-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 AMK58_04750 65f521fc1760b40999312ee53973ac7e 296 SMART SM00240 207 256 8.0E-6 T 11-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 AMK58_04750 65f521fc1760b40999312ee53973ac7e 296 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 5 152 1.5E-15 T 11-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMK58_04750 65f521fc1760b40999312ee53973ac7e 296 Gene3D G3DSA:3.30.70.1230 1 163 7.5E-42 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_04750 65f521fc1760b40999312ee53973ac7e 296 Gene3D G3DSA:2.60.200.20 191 282 5.0E-14 T 11-10-2018 AMK58_04750 65f521fc1760b40999312ee53973ac7e 296 Pfam PF00498 FHA domain 208 255 3.4E-10 T 11-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 AMK58_02310 c5886695218d13775c1457964eda563e 446 Pfam PF07044 Protein of unknown function (DUF1329) 85 439 9.6E-110 T 11-10-2018 IPR010752 Protein of unknown function DUF1329 AMK58_20820 1a2d05a7ea982b5c8bec4733d50b4bf1 510 PRINTS PR01607 Apyrase family signature 366 389 2.3E-8 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMK58_20820 1a2d05a7ea982b5c8bec4733d50b4bf1 510 PRINTS PR01607 Apyrase family signature 439 458 2.3E-8 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMK58_20820 1a2d05a7ea982b5c8bec4733d50b4bf1 510 Gene3D G3DSA:3.60.21.10 36 245 6.5E-24 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like AMK58_20820 1a2d05a7ea982b5c8bec4733d50b4bf1 510 SUPERFAMILY SSF56300 52 299 6.83E-23 T 11-10-2018 AMK58_20820 1a2d05a7ea982b5c8bec4733d50b4bf1 510 Pfam PF02872 5'-nucleotidase, C-terminal domain 310 465 2.0E-41 T 11-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMK58_20820 1a2d05a7ea982b5c8bec4733d50b4bf1 510 Gene3D G3DSA:3.90.780.10 309 510 2.1E-49 T 11-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMK58_20820 1a2d05a7ea982b5c8bec4733d50b4bf1 510 SUPERFAMILY SSF55816 306 508 9.55E-51 T 11-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMK58_09875 99d1c947e8ded7f2b32288a235500b8a 313 Hamap MF_02125 50S ribosomal protein L3 glutamine methyltransferase [prmB]. 10 311 49.028 T 11-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 AMK58_09875 99d1c947e8ded7f2b32288a235500b8a 313 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 19 297 3.9E-65 T 11-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 AMK58_09875 99d1c947e8ded7f2b32288a235500b8a 313 Gene3D G3DSA:3.40.50.150 108 286 1.0E-46 T 11-10-2018 AMK58_09875 99d1c947e8ded7f2b32288a235500b8a 313 Pfam PF05175 Methyltransferase small domain 144 226 7.0E-19 T 11-10-2018 IPR007848 Methyltransferase small domain GO:0008168 AMK58_09875 99d1c947e8ded7f2b32288a235500b8a 313 PIRSF PIRSF037167 5 313 2.9E-118 T 11-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 AMK58_09875 99d1c947e8ded7f2b32288a235500b8a 313 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 215 221 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMK58_09875 99d1c947e8ded7f2b32288a235500b8a 313 SUPERFAMILY SSF53335 20 294 1.19E-49 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_09875 99d1c947e8ded7f2b32288a235500b8a 313 TIGRFAM TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 17 306 1.7E-118 T 11-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 AMK58_16625 e697a5957447528325a420d0275cff04 312 SUPERFAMILY SSF52283 1 134 4.46E-31 T 11-10-2018 AMK58_16625 e697a5957447528325a420d0275cff04 312 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 108 280 2.1E-47 T 11-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AMK58_16625 e697a5957447528325a420d0275cff04 312 Gene3D G3DSA:3.40.50.720 100 283 1.4E-113 T 11-10-2018 AMK58_16625 e697a5957447528325a420d0275cff04 312 Gene3D G3DSA:3.40.50.720 19 306 1.4E-113 T 11-10-2018 AMK58_16625 e697a5957447528325a420d0275cff04 312 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 5 311 6.6E-25 T 11-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 AMK58_16625 e697a5957447528325a420d0275cff04 312 SUPERFAMILY SSF51735 100 281 1.57E-51 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_27435 7ec289c737707431a94338d6523e8ffe 501 PRINTS PR00084 Mannitol dehydrogenase signature 174 187 2.7E-8 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AMK58_27435 7ec289c737707431a94338d6523e8ffe 501 PRINTS PR00084 Mannitol dehydrogenase signature 215 228 2.7E-8 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AMK58_27435 7ec289c737707431a94338d6523e8ffe 501 PRINTS PR00084 Mannitol dehydrogenase signature 245 260 2.7E-8 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AMK58_27435 7ec289c737707431a94338d6523e8ffe 501 PRINTS PR00084 Mannitol dehydrogenase signature 29 39 2.7E-8 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AMK58_27435 7ec289c737707431a94338d6523e8ffe 501 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 214 473 1.4E-51 T 11-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 AMK58_27435 7ec289c737707431a94338d6523e8ffe 501 Gene3D G3DSA:1.10.1040.10 282 500 1.5E-57 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMK58_27435 7ec289c737707431a94338d6523e8ffe 501 SUPERFAMILY SSF48179 283 500 7.14E-43 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMK58_27435 7ec289c737707431a94338d6523e8ffe 501 SUPERFAMILY SSF51735 22 279 4.33E-67 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_27435 7ec289c737707431a94338d6523e8ffe 501 Gene3D G3DSA:3.40.50.720 15 279 1.5E-53 T 11-10-2018 AMK58_27435 7ec289c737707431a94338d6523e8ffe 501 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 28 141 2.8E-13 T 11-10-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 AMK58_24550 fc04b467e0d1c6e8464e20fda5a9ff40 1246 Pfam PF00171 Aldehyde dehydrogenase family 597 1040 3.0E-114 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMK58_24550 fc04b467e0d1c6e8464e20fda5a9ff40 1246 Gene3D G3DSA:3.40.605.10 572 1045 1.6E-142 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMK58_24550 fc04b467e0d1c6e8464e20fda5a9ff40 1246 SUPERFAMILY SSF81935 40 208 8.24E-61 T 11-10-2018 IPR024089 Proline dehydrogenase PutA, domain I/II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 AMK58_24550 fc04b467e0d1c6e8464e20fda5a9ff40 1246 TIGRFAM TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase 548 1044 3.1E-229 T 11-10-2018 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 GO:0003842|GO:0006561|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 AMK58_24550 fc04b467e0d1c6e8464e20fda5a9ff40 1246 Pfam PF14850 DNA-binding domain of Proline dehydrogenase 95 206 1.5E-44 T 11-10-2018 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 AMK58_24550 fc04b467e0d1c6e8464e20fda5a9ff40 1246 PIRSF PIRSF000197 26 1246 0.0 T 11-10-2018 IPR025703 Bifunctional protein PutA GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0010133 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 AMK58_24550 fc04b467e0d1c6e8464e20fda5a9ff40 1246 Pfam PF01619 Proline dehydrogenase 218 511 5.5E-98 T 11-10-2018 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|Reactome: R-HSA-70688 AMK58_24550 fc04b467e0d1c6e8464e20fda5a9ff40 1246 SUPERFAMILY SSF51730 209 556 3.1E-118 T 11-10-2018 IPR029041 FAD-linked oxidoreductase-like AMK58_24550 fc04b467e0d1c6e8464e20fda5a9ff40 1246 Gene3D G3DSA:3.20.20.220 40 133 3.8E-13 T 11-10-2018 AMK58_24550 fc04b467e0d1c6e8464e20fda5a9ff40 1246 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 847 858 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AMK58_24550 fc04b467e0d1c6e8464e20fda5a9ff40 1246 Gene3D G3DSA:3.20.20.220 165 548 3.2E-146 T 11-10-2018 AMK58_24550 fc04b467e0d1c6e8464e20fda5a9ff40 1246 Gene3D G3DSA:3.40.309.10 822 1014 1.6E-142 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMK58_24550 fc04b467e0d1c6e8464e20fda5a9ff40 1246 SUPERFAMILY SSF53720 586 1045 3.01E-126 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMK58_23930 7b0bb34e5885419905f36f9186b10cff 337 Pfam PF02653 Branched-chain amino acid transport system / permease component 38 298 7.1E-41 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_12145 6783732187a3404737be33c962b78d18 194 Gene3D G3DSA:3.90.79.10 45 180 6.3E-36 T 11-10-2018 AMK58_12145 6783732187a3404737be33c962b78d18 194 Pfam PF14803 Nudix N-terminal 22 44 4.1E-7 T 11-10-2018 IPR029401 Nudix hydrolase, N-terminal KEGG: 00230+3.6.1.13|KEGG: 00740+3.6.1.18 AMK58_12145 6783732187a3404737be33c962b78d18 194 SUPERFAMILY SSF55811 23 171 4.2E-34 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMK58_12145 6783732187a3404737be33c962b78d18 194 Pfam PF00293 NUDIX domain 53 155 3.3E-10 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMK58_26185 6212f76df7de5a33caca4d48dfa7dd55 414 SUPERFAMILY SSF64518 1 414 6.15E-59 T 11-10-2018 AMK58_26185 6212f76df7de5a33caca4d48dfa7dd55 414 Gene3D G3DSA:3.30.70.2120 182 311 4.9E-7 T 11-10-2018 AMK58_26185 6212f76df7de5a33caca4d48dfa7dd55 414 Pfam PF00700 Bacterial flagellin C-terminal helical region 340 413 1.0E-16 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 AMK58_26185 6212f76df7de5a33caca4d48dfa7dd55 414 Gene3D G3DSA:1.10.8.410 366 414 8.6E-7 T 11-10-2018 AMK58_26185 6212f76df7de5a33caca4d48dfa7dd55 414 PRINTS PR00207 Flagellin signature 36 53 1.1E-6 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 AMK58_26185 6212f76df7de5a33caca4d48dfa7dd55 414 PRINTS PR00207 Flagellin signature 107 130 1.1E-6 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 AMK58_26185 6212f76df7de5a33caca4d48dfa7dd55 414 PRINTS PR00207 Flagellin signature 75 94 1.1E-6 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 AMK58_26185 6212f76df7de5a33caca4d48dfa7dd55 414 Gene3D G3DSA:1.20.1330.10 44 354 4.9E-7 T 11-10-2018 AMK58_26185 6212f76df7de5a33caca4d48dfa7dd55 414 Pfam PF00669 Bacterial flagellin N-terminal helical region 4 134 6.7E-21 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 AMK58_03905 d89a0feb67053e145925706562fb4873 316 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 8 311 2.2E-77 T 11-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMK58_03905 d89a0feb67053e145925706562fb4873 316 Gene3D G3DSA:3.40.50.20 1 91 6.3E-30 T 11-10-2018 AMK58_03905 d89a0feb67053e145925706562fb4873 316 PIRSF PIRSF039102 4 61 1.7E-11 T 11-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMK58_03905 d89a0feb67053e145925706562fb4873 316 PIRSF PIRSF039102 54 316 2.2E-64 T 11-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMK58_03905 d89a0feb67053e145925706562fb4873 316 Gene3D G3DSA:3.30.1490.20 118 180 2.2E-57 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMK58_03905 d89a0feb67053e145925706562fb4873 316 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 7 312 33.695 T 11-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMK58_03905 d89a0feb67053e145925706562fb4873 316 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 70 81 - T 11-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMK58_03905 d89a0feb67053e145925706562fb4873 316 Pfam PF07478 D-ala D-ala ligase C-terminus 138 309 6.3E-38 T 11-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMK58_03905 d89a0feb67053e145925706562fb4873 316 Pfam PF01820 D-ala D-ala ligase N-terminus 9 91 3.7E-20 T 11-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMK58_03905 d89a0feb67053e145925706562fb4873 316 SUPERFAMILY SSF52440 6 103 3.07E-30 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMK58_03905 d89a0feb67053e145925706562fb4873 316 Gene3D G3DSA:3.30.470.20 93 307 2.2E-57 T 11-10-2018 AMK58_03905 d89a0feb67053e145925706562fb4873 316 SUPERFAMILY SSF56059 103 310 1.86E-44 T 11-10-2018 AMK58_26140 52763dd61e6cec5518bedc1eb1ec59cd 214 Pfam PF01794 Ferric reductase like transmembrane component 55 166 7.5E-19 T 11-10-2018 IPR013130 Ferric reductase transmembrane component-like domain AMK58_26140 52763dd61e6cec5518bedc1eb1ec59cd 214 Hamap MF_01207 Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ [msrQ]. 13 202 20.441 T 11-10-2018 IPR022837 Protein-methionine-sulfoxide reductase subunit MsrQ GO:0005887|GO:0030091 AMK58_20810 71472b377558c6fc65f0044e22d7d667 410 SUPERFAMILY SSF52172 13 148 5.55E-38 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_20810 71472b377558c6fc65f0044e22d7d667 410 Gene3D G3DSA:3.30.565.10 253 407 4.1E-28 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_20810 71472b377558c6fc65f0044e22d7d667 410 SMART SM00448 15 127 1.2E-35 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_20810 71472b377558c6fc65f0044e22d7d667 410 Gene3D G3DSA:1.10.287.130 146 246 8.6E-15 T 11-10-2018 AMK58_20810 71472b377558c6fc65f0044e22d7d667 410 Gene3D G3DSA:3.40.50.2300 9 145 3.0E-35 T 11-10-2018 AMK58_20810 71472b377558c6fc65f0044e22d7d667 410 Pfam PF00072 Response regulator receiver domain 17 127 3.3E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_20810 71472b377558c6fc65f0044e22d7d667 410 Pfam PF00512 His Kinase A (phospho-acceptor) domain 168 229 2.1E-7 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_20810 71472b377558c6fc65f0044e22d7d667 410 SUPERFAMILY SSF47384 155 212 6.28E-8 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_20810 71472b377558c6fc65f0044e22d7d667 410 SUPERFAMILY SSF55874 255 404 1.57E-29 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_20810 71472b377558c6fc65f0044e22d7d667 410 PRINTS PR00344 Bacterial sensor protein C-terminal signature 334 348 8.0E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_20810 71472b377558c6fc65f0044e22d7d667 410 PRINTS PR00344 Bacterial sensor protein C-terminal signature 390 403 8.0E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_20810 71472b377558c6fc65f0044e22d7d667 410 PRINTS PR00344 Bacterial sensor protein C-terminal signature 352 362 8.0E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_20810 71472b377558c6fc65f0044e22d7d667 410 PRINTS PR00344 Bacterial sensor protein C-terminal signature 365 383 8.0E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_20810 71472b377558c6fc65f0044e22d7d667 410 SMART SM00388 168 239 7.1E-5 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_20810 71472b377558c6fc65f0044e22d7d667 410 SMART SM00387 293 406 1.3E-16 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_20810 71472b377558c6fc65f0044e22d7d667 410 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 299 405 5.4E-16 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_11775 6abf7801f9a8759f2741c8fcf94aa475 717 Gene3D G3DSA:3.40.50.300 177 366 2.5E-67 T 11-10-2018 AMK58_11775 6abf7801f9a8759f2741c8fcf94aa475 717 Pfam PF00270 DEAD/DEAH box helicase 207 348 7.1E-15 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMK58_11775 6abf7801f9a8759f2741c8fcf94aa475 717 SMART SM00487 181 380 1.7E-26 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMK58_11775 6abf7801f9a8759f2741c8fcf94aa475 717 Pfam PF00271 Helicase conserved C-terminal domain 512 579 2.0E-4 T 11-10-2018 IPR001650 Helicase, C-terminal AMK58_11775 6abf7801f9a8759f2741c8fcf94aa475 717 SUPERFAMILY SSF52540 208 605 2.48E-28 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_11775 6abf7801f9a8759f2741c8fcf94aa475 717 Hamap MF_00983 Probable primosomal protein N' [priA]. 1 716 23.79 T 11-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 AMK58_11775 6abf7801f9a8759f2741c8fcf94aa475 717 Gene3D G3DSA:1.10.8.630 1 104 3.4E-21 T 11-10-2018 AMK58_11775 6abf7801f9a8759f2741c8fcf94aa475 717 TIGRFAM TIGR00595 priA: primosomal protein N' 209 714 5.3E-196 T 11-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 AMK58_11775 6abf7801f9a8759f2741c8fcf94aa475 717 SUPERFAMILY SSF52540 65 359 1.08E-38 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_11775 6abf7801f9a8759f2741c8fcf94aa475 717 SMART SM00490 487 580 1.2E-4 T 11-10-2018 IPR001650 Helicase, C-terminal AMK58_25090 2fb20cd27dd1ce9c720e921b87cafe80 486 Pfam PF00263 Bacterial type II and III secretion system protein 256 417 4.9E-45 T 11-10-2018 IPR004846 Type II/III secretion system GO:0009306 AMK58_25090 2fb20cd27dd1ce9c720e921b87cafe80 486 PRINTS PR00811 Bacterial general secretion pathway protein D signature 381 399 6.3E-12 T 11-10-2018 IPR001775 GspD/PilQ family AMK58_25090 2fb20cd27dd1ce9c720e921b87cafe80 486 PRINTS PR00811 Bacterial general secretion pathway protein D signature 252 276 6.3E-12 T 11-10-2018 IPR001775 GspD/PilQ family AMK58_25090 2fb20cd27dd1ce9c720e921b87cafe80 486 PRINTS PR00811 Bacterial general secretion pathway protein D signature 404 418 6.3E-12 T 11-10-2018 IPR001775 GspD/PilQ family AMK58_25090 2fb20cd27dd1ce9c720e921b87cafe80 486 PRINTS PR00811 Bacterial general secretion pathway protein D signature 179 189 6.3E-12 T 11-10-2018 IPR001775 GspD/PilQ family AMK58_25090 2fb20cd27dd1ce9c720e921b87cafe80 486 Pfam PF13629 Pilus formation protein N terminal region 41 111 2.5E-15 T 11-10-2018 IPR032789 Pilus formation protein, N-terminal AMK58_25090 2fb20cd27dd1ce9c720e921b87cafe80 486 Pfam PF04972 BON domain 117 175 6.8E-8 T 11-10-2018 IPR007055 BON domain AMK58_12605 eac5fff32c403648226caefb44181733 94 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 47 66 - T 11-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 AMK58_12605 eac5fff32c403648226caefb44181733 94 Gene3D G3DSA:4.10.520.10 1 94 4.6E-34 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 AMK58_12605 eac5fff32c403648226caefb44181733 94 Pfam PF00216 Bacterial DNA-binding protein 1 91 4.2E-32 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMK58_12605 eac5fff32c403648226caefb44181733 94 TIGRFAM TIGR00988 hip: integration host factor, beta subunit 1 93 2.1E-45 T 11-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 AMK58_12605 eac5fff32c403648226caefb44181733 94 Hamap MF_00381 Integration host factor subunit beta [ihfB]. 1 94 29.493 T 11-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 AMK58_12605 eac5fff32c403648226caefb44181733 94 PRINTS PR01727 Prokaryotic integration host factor signature 59 72 4.6E-18 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMK58_12605 eac5fff32c403648226caefb44181733 94 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 4.6E-18 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMK58_12605 eac5fff32c403648226caefb44181733 94 PRINTS PR01727 Prokaryotic integration host factor signature 41 56 4.6E-18 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMK58_12605 eac5fff32c403648226caefb44181733 94 SMART SM00411 1 91 3.1E-41 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMK58_12605 eac5fff32c403648226caefb44181733 94 SUPERFAMILY SSF47729 1 91 7.51E-31 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 AMK58_09610 53f34a1f16bb7be694730f20fd653ec3 430 Gene3D G3DSA:3.90.170.10 266 430 7.5E-68 T 11-10-2018 AMK58_09610 53f34a1f16bb7be694730f20fd653ec3 430 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 10 17 - T 11-10-2018 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AMK58_09610 53f34a1f16bb7be694730f20fd653ec3 430 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 133 144 - T 11-10-2018 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AMK58_09610 53f34a1f16bb7be694730f20fd653ec3 430 SUPERFAMILY SSF52540 1 424 2.02E-169 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_09610 53f34a1f16bb7be694730f20fd653ec3 430 SMART SM00788 3 423 7.9E-283 T 11-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AMK58_09610 53f34a1f16bb7be694730f20fd653ec3 430 Pfam PF00709 Adenylosuccinate synthetase 4 422 1.1E-172 T 11-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AMK58_09610 53f34a1f16bb7be694730f20fd653ec3 430 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 6 428 1.8E-159 T 11-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AMK58_09610 53f34a1f16bb7be694730f20fd653ec3 430 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 430 208.321 T 11-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AMK58_09610 53f34a1f16bb7be694730f20fd653ec3 430 Gene3D G3DSA:3.40.440.10 6 258 1.7E-90 T 11-10-2018 AMK58_09610 53f34a1f16bb7be694730f20fd653ec3 430 Gene3D G3DSA:1.10.300.10 108 206 1.7E-90 T 11-10-2018 AMK58_12790 cb4847a820620d638c79afc04eede815 278 Gene3D G3DSA:3.60.110.10 2 274 1.9E-85 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMK58_12790 cb4847a820620d638c79afc04eede815 278 Pfam PF00795 Carbon-nitrogen hydrolase 6 260 1.2E-50 T 11-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 AMK58_12790 cb4847a820620d638c79afc04eede815 278 SUPERFAMILY SSF56317 1 267 2.75E-77 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMK58_06620 5bb459746e0bcc90bf388a1aab58afc2 650 Pfam PF00072 Response regulator receiver domain 531 643 5.0E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_06620 5bb459746e0bcc90bf388a1aab58afc2 650 SUPERFAMILY SSF52172 526 649 1.27E-33 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_06620 5bb459746e0bcc90bf388a1aab58afc2 650 SMART SM00448 529 643 2.2E-31 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_06620 5bb459746e0bcc90bf388a1aab58afc2 650 Gene3D G3DSA:3.40.50.2300 520 646 1.4E-30 T 11-10-2018 AMK58_27355 a60de0b546909ffc197b7a3e385ec855 191 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 107 117 - T 11-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 AMK58_27355 a60de0b546909ffc197b7a3e385ec855 191 SUPERFAMILY SSF53178 1 183 6.02E-71 T 11-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 AMK58_27355 a60de0b546909ffc197b7a3e385ec855 191 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 14 27 - T 11-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 AMK58_27355 a60de0b546909ffc197b7a3e385ec855 191 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 1 177 35.756 T 11-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AMK58_27355 a60de0b546909ffc197b7a3e385ec855 191 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 1 183 7.4E-59 T 11-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AMK58_27355 a60de0b546909ffc197b7a3e385ec855 191 Gene3D G3DSA:3.40.50.1470 1 188 6.5E-70 T 11-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 AMK58_27355 a60de0b546909ffc197b7a3e385ec855 191 Pfam PF01195 Peptidyl-tRNA hydrolase 3 183 1.1E-56 T 11-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AMK58_24820 46a3fae5f66a151d008294c87c39afbd 346 Gene3D G3DSA:3.40.190.170 27 336 5.5E-79 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily AMK58_24820 46a3fae5f66a151d008294c87c39afbd 346 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 49 321 3.2E-63 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 AMK58_24820 46a3fae5f66a151d008294c87c39afbd 346 PIRSF PIRSF006470 1 339 2.8E-77 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 AMK58_24820 46a3fae5f66a151d008294c87c39afbd 346 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 48 269 2.2E-53 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 AMK58_19710 4b3479b479870d8ea377d6568cd18de2 260 Pfam PF01553 Acyltransferase 58 183 1.1E-17 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMK58_19710 4b3479b479870d8ea377d6568cd18de2 260 SUPERFAMILY SSF69593 9 232 1.44E-33 T 11-10-2018 AMK58_19710 4b3479b479870d8ea377d6568cd18de2 260 SMART SM00563 72 186 6.9E-20 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMK58_11045 f2c2910f14dba1e209e54772e47a7e6a 132 SUPERFAMILY SSF54427 9 125 5.56E-14 T 11-10-2018 IPR032710 NTF2-like domain superfamily AMK58_11045 f2c2910f14dba1e209e54772e47a7e6a 132 Gene3D G3DSA:3.10.450.50 3 126 4.9E-9 T 11-10-2018 AMK58_24965 d6407f22387b0e369d5c37657b1b8a1e 82 Pfam PF06568 Domain of unknown function (DUF1127) 38 71 1.1E-7 T 11-10-2018 IPR009506 Protein of unknown function DUF1127 AMK58_09275 9ce0b0cacdba7a86e25e4990926faf60 363 SUPERFAMILY SSF46785 264 338 2.65E-24 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_09275 9ce0b0cacdba7a86e25e4990926faf60 363 SUPERFAMILY SSF52540 28 259 4.7E-52 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_09275 9ce0b0cacdba7a86e25e4990926faf60 363 SMART SM00382 59 186 5.0E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_09275 9ce0b0cacdba7a86e25e4990926faf60 363 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 261 334 2.6E-32 T 11-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 AMK58_09275 9ce0b0cacdba7a86e25e4990926faf60 363 Gene3D G3DSA:3.40.50.300 27 189 2.9E-38 T 11-10-2018 AMK58_09275 9ce0b0cacdba7a86e25e4990926faf60 363 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 32 334 3.0E-134 T 11-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 AMK58_09275 9ce0b0cacdba7a86e25e4990926faf60 363 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 259 339 3.0E-26 T 11-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 AMK58_09275 9ce0b0cacdba7a86e25e4990926faf60 363 Gene3D G3DSA:1.10.8.60 190 264 1.1E-25 T 11-10-2018 AMK58_09275 9ce0b0cacdba7a86e25e4990926faf60 363 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 22 242 2.4E-110 T 11-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 AMK58_09275 9ce0b0cacdba7a86e25e4990926faf60 363 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 363 167.22 T 11-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 AMK58_09275 9ce0b0cacdba7a86e25e4990926faf60 363 Gene3D G3DSA:1.10.10.10 265 344 6.2E-32 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_09275 9ce0b0cacdba7a86e25e4990926faf60 363 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 67 86 7.1E-5 T 11-10-2018 AMK58_09275 9ce0b0cacdba7a86e25e4990926faf60 363 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 357 363 7.1E-5 T 11-10-2018 AMK58_26600 2fafc472dc2b67c8680f2b4996e220e3 585 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 24 191 3.8E-45 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AMK58_26600 2fafc472dc2b67c8680f2b4996e220e3 585 SUPERFAMILY SSF52518 23 192 1.23E-42 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMK58_26600 2fafc472dc2b67c8680f2b4996e220e3 585 Gene3D G3DSA:3.40.50.970 14 206 7.8E-60 T 11-10-2018 AMK58_26600 2fafc472dc2b67c8680f2b4996e220e3 585 SUPERFAMILY SSF52518 386 564 5.9E-40 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMK58_26600 2fafc472dc2b67c8680f2b4996e220e3 585 Gene3D G3DSA:3.40.50.1220 207 366 5.8E-43 T 11-10-2018 AMK58_26600 2fafc472dc2b67c8680f2b4996e220e3 585 Gene3D G3DSA:3.40.50.970 368 581 4.4E-57 T 11-10-2018 AMK58_26600 2fafc472dc2b67c8680f2b4996e220e3 585 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 215 346 1.0E-32 T 11-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AMK58_26600 2fafc472dc2b67c8680f2b4996e220e3 585 SUPERFAMILY SSF52467 207 370 7.77E-40 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AMK58_26600 2fafc472dc2b67c8680f2b4996e220e3 585 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 412 556 2.8E-24 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMK58_26600 2fafc472dc2b67c8680f2b4996e220e3 585 TIGRFAM TIGR03254 oxalate_oxc: oxalyl-CoA decarboxylase 21 575 1.5E-301 T 11-10-2018 IPR017660 Oxalyl-CoA decarboxylase GO:0008949|GO:0030976|GO:0033611|GO:0046872 KEGG: 00630+4.1.1.8|MetaCyc: PWY-6695|MetaCyc: PWY-6696|MetaCyc: PWY-7985 AMK58_28695 cf32aae354ff5a95a6decbd67398f668 637 SUPERFAMILY SSF53300 448 634 8.26E-25 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMK58_28695 cf32aae354ff5a95a6decbd67398f668 637 Gene3D G3DSA:3.40.50.410 444 612 4.3E-18 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMK58_28695 cf32aae354ff5a95a6decbd67398f668 637 SMART SM00327 447 630 2.4E-19 T 11-10-2018 IPR002035 von Willebrand factor, type A AMK58_28695 cf32aae354ff5a95a6decbd67398f668 637 Pfam PF13519 von Willebrand factor type A domain 450 563 5.4E-11 T 11-10-2018 IPR002035 von Willebrand factor, type A AMK58_16675 501cbc8df2acee61e1f731677fca8b6d 249 Pfam PF01925 Sulfite exporter TauE/SafE 10 246 5.8E-29 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 AMK58_05515 96e4492827876a96f195ac2494a328eb 168 Gene3D G3DSA:3.30.70.260 5 85 5.1E-32 T 11-10-2018 AMK58_05515 96e4492827876a96f195ac2494a328eb 168 SUPERFAMILY SSF55021 7 82 1.06E-18 T 11-10-2018 AMK58_05515 96e4492827876a96f195ac2494a328eb 168 Pfam PF13710 ACT domain 17 79 7.0E-13 T 11-10-2018 AMK58_05515 96e4492827876a96f195ac2494a328eb 168 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 7 82 8.0E-28 T 11-10-2018 AMK58_05515 96e4492827876a96f195ac2494a328eb 168 Gene3D G3DSA:3.30.70.1150 90 167 2.5E-23 T 11-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal AMK58_05515 96e4492827876a96f195ac2494a328eb 168 SUPERFAMILY SSF55021 86 165 5.04E-23 T 11-10-2018 AMK58_05515 96e4492827876a96f195ac2494a328eb 168 Pfam PF10369 Small subunit of acetolactate synthase 91 164 1.6E-23 T 11-10-2018 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 AMK58_05515 96e4492827876a96f195ac2494a328eb 168 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 7 164 7.5E-51 T 11-10-2018 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 AMK58_08820 184a2849aee21bba0396ee5c0f8063f5 493 Pfam PF00805 Pentapeptide repeats (8 copies) 133 170 6.1E-11 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_08820 184a2849aee21bba0396ee5c0f8063f5 493 Pfam PF00805 Pentapeptide repeats (8 copies) 337 372 2.8E-9 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_08820 184a2849aee21bba0396ee5c0f8063f5 493 Pfam PF00805 Pentapeptide repeats (8 copies) 267 306 4.1E-9 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_08820 184a2849aee21bba0396ee5c0f8063f5 493 Pfam PF00805 Pentapeptide repeats (8 copies) 61 99 2.2E-10 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_08820 184a2849aee21bba0396ee5c0f8063f5 493 Gene3D G3DSA:2.160.20.80 228 382 4.5E-30 T 11-10-2018 AMK58_08820 184a2849aee21bba0396ee5c0f8063f5 493 SUPERFAMILY SSF141571 241 372 1.22E-26 T 11-10-2018 AMK58_08820 184a2849aee21bba0396ee5c0f8063f5 493 SUPERFAMILY SSF141571 23 200 3.24E-39 T 11-10-2018 AMK58_08820 184a2849aee21bba0396ee5c0f8063f5 493 Gene3D G3DSA:2.160.20.80 11 115 7.7E-25 T 11-10-2018 AMK58_08820 184a2849aee21bba0396ee5c0f8063f5 493 Gene3D G3DSA:2.160.20.100 128 213 1.9E-18 T 11-10-2018 AMK58_13810 98952f7538b7c780f4b846baf7d81433 273 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 1 198 4.1E-26 T 11-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 AMK58_13810 98952f7538b7c780f4b846baf7d81433 273 SUPERFAMILY SSF53790 1 215 2.36E-75 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 AMK58_13810 98952f7538b7c780f4b846baf7d81433 273 PIRSF PIRSF005917 1 270 7.6E-95 T 11-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 AMK58_13810 98952f7538b7c780f4b846baf7d81433 273 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 1 217 34.472 T 11-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 AMK58_13810 98952f7538b7c780f4b846baf7d81433 273 Gene3D G3DSA:3.30.950.10 106 222 5.3E-37 T 11-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 AMK58_13810 98952f7538b7c780f4b846baf7d81433 273 Gene3D G3DSA:3.40.1010.10 1 105 1.7E-38 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 AMK58_13810 98952f7538b7c780f4b846baf7d81433 273 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 1 265 5.4E-71 T 11-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 AMK58_25415 5f8783df30001c8efa5ad9af761ee4ff 88 Pfam PF11747 Killing trait 11 77 6.0E-29 T 11-10-2018 IPR021070 Killing trait, RebB AMK58_12710 0b638d7e6a1621ca63739a5af3139bc2 284 SMART SM00850 185 278 8.8E-19 T 11-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 AMK58_12710 0b638d7e6a1621ca63739a5af3139bc2 284 Pfam PF04397 LytTr DNA-binding domain 190 276 3.6E-17 T 11-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 AMK58_21220 9453893af0517215b585acfb5aaedf34 427 Gene3D G3DSA:3.40.630.10 23 411 2.8E-101 T 11-10-2018 AMK58_21220 9453893af0517215b585acfb5aaedf34 427 Pfam PF07687 Peptidase dimerisation domain 199 320 1.5E-19 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain AMK58_21220 9453893af0517215b585acfb5aaedf34 427 Gene3D G3DSA:3.30.70.360 203 337 2.8E-101 T 11-10-2018 AMK58_21220 9453893af0517215b585acfb5aaedf34 427 TIGRFAM TIGR01910 DapE-ArgE: peptidase, ArgE/DapE family 21 414 6.1E-89 T 11-10-2018 IPR010182 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase/Succinyl-diaminopimelate desuccinylase AMK58_21220 9453893af0517215b585acfb5aaedf34 427 SUPERFAMILY SSF53187 7 422 1.4E-70 T 11-10-2018 AMK58_21220 9453893af0517215b585acfb5aaedf34 427 SUPERFAMILY SSF55031 202 336 4.19E-12 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain AMK58_21220 9453893af0517215b585acfb5aaedf34 427 Pfam PF01546 Peptidase family M20/M25/M40 93 418 8.2E-41 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 AMK58_17280 b2efc3adcf25bdeab8255f5680e9fcbd 493 Pfam PF14401 RimK-like ATPgrasp N-terminal domain 27 174 1.4E-45 T 11-10-2018 IPR025839 RimK-like ATPgrasp N-terminal domain AMK58_17280 b2efc3adcf25bdeab8255f5680e9fcbd 493 Gene3D G3DSA:3.40.50.20 214 298 1.0E-5 T 11-10-2018 AMK58_17280 b2efc3adcf25bdeab8255f5680e9fcbd 493 Gene3D G3DSA:3.30.1490.20 300 363 2.2E-8 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMK58_17280 b2efc3adcf25bdeab8255f5680e9fcbd 493 SUPERFAMILY SSF56059 275 480 3.93E-37 T 11-10-2018 AMK58_17280 b2efc3adcf25bdeab8255f5680e9fcbd 493 Gene3D G3DSA:3.30.470.20 364 476 4.1E-16 T 11-10-2018 AMK58_17280 b2efc3adcf25bdeab8255f5680e9fcbd 493 Pfam PF08443 RimK-like ATP-grasp domain 284 458 2.9E-8 T 11-10-2018 IPR013651 ATP-grasp fold, RimK-type Reactome: R-HSA-70614 AMK58_10125 3e227d132970449585e2628a79074c77 360 SUPERFAMILY SSF101801 280 355 1.02E-12 T 11-10-2018 IPR036429 SpoA-like superfamily AMK58_10125 3e227d132970449585e2628a79074c77 360 Pfam PF02154 Flagellar motor switch protein FliM 70 260 8.3E-66 T 11-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 AMK58_10125 3e227d132970449585e2628a79074c77 360 Gene3D G3DSA:3.40.1550.10 75 261 1.1E-52 T 11-10-2018 IPR028976 CheC-like superfamily AMK58_10125 3e227d132970449585e2628a79074c77 360 PRINTS PR00955 Flagellar motor switch protein FliM signature 118 134 3.9E-23 T 11-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 AMK58_10125 3e227d132970449585e2628a79074c77 360 PRINTS PR00955 Flagellar motor switch protein FliM signature 39 52 3.9E-23 T 11-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 AMK58_10125 3e227d132970449585e2628a79074c77 360 PRINTS PR00955 Flagellar motor switch protein FliM signature 143 162 3.9E-23 T 11-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 AMK58_10125 3e227d132970449585e2628a79074c77 360 PRINTS PR00955 Flagellar motor switch protein FliM signature 242 260 3.9E-23 T 11-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 AMK58_10125 3e227d132970449585e2628a79074c77 360 SUPERFAMILY SSF103039 78 260 6.54E-11 T 11-10-2018 IPR028976 CheC-like superfamily AMK58_10125 3e227d132970449585e2628a79074c77 360 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 40 352 8.3E-91 T 11-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 AMK58_10125 3e227d132970449585e2628a79074c77 360 PIRSF PIRSF002888 38 359 2.7E-91 T 11-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 AMK58_10125 3e227d132970449585e2628a79074c77 360 Gene3D G3DSA:2.30.330.10 274 358 1.5E-5 T 11-10-2018 IPR036429 SpoA-like superfamily AMK58_10125 3e227d132970449585e2628a79074c77 360 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 283 350 6.6E-18 T 11-10-2018 IPR001543 Surface presentation of antigen (SpoA) AMK58_19825 f6ee95aa73208d0059bdea5c3e39ef22 861 TIGRFAM TIGR00117 acnB: aconitate hydratase 2 1 854 0.0 T 11-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 AMK58_19825 f6ee95aa73208d0059bdea5c3e39ef22 861 Gene3D G3DSA:3.40.1060.10 383 682 1.6E-148 T 11-10-2018 IPR015932 Aconitase, domain 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-1268020|Reactome: R-HSA-71403 AMK58_19825 f6ee95aa73208d0059bdea5c3e39ef22 861 Gene3D G3DSA:1.25.40.310 1 161 4.4E-64 T 11-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 AMK58_19825 f6ee95aa73208d0059bdea5c3e39ef22 861 Gene3D G3DSA:3.30.499.10 684 861 1.9E-64 T 11-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 AMK58_19825 f6ee95aa73208d0059bdea5c3e39ef22 861 Pfam PF00330 Aconitase family (aconitate hydratase) 472 818 3.3E-38 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMK58_19825 f6ee95aa73208d0059bdea5c3e39ef22 861 PIRSF PIRSF036687 1 859 0.0 T 11-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 AMK58_19825 f6ee95aa73208d0059bdea5c3e39ef22 861 SUPERFAMILY SSF74778 2 160 1.28E-63 T 11-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 AMK58_19825 f6ee95aa73208d0059bdea5c3e39ef22 861 SUPERFAMILY SSF53732 377 854 8.89E-145 T 11-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 AMK58_19825 f6ee95aa73208d0059bdea5c3e39ef22 861 SUPERFAMILY SSF52016 162 370 2.2E-64 T 11-10-2018 AMK58_19825 f6ee95aa73208d0059bdea5c3e39ef22 861 Pfam PF11791 Aconitate B N-terminal domain 4 156 3.3E-61 T 11-10-2018 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 AMK58_19825 f6ee95aa73208d0059bdea5c3e39ef22 861 Gene3D G3DSA:3.30.499.10 403 530 1.6E-148 T 11-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 AMK58_19825 f6ee95aa73208d0059bdea5c3e39ef22 861 ProSitePatterns PS00450 Aconitase family signature 1. 703 720 - T 11-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AMK58_19825 f6ee95aa73208d0059bdea5c3e39ef22 861 Gene3D G3DSA:3.20.19.10 162 359 6.6E-69 T 11-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 AMK58_19825 f6ee95aa73208d0059bdea5c3e39ef22 861 Pfam PF06434 Aconitate hydratase 2 N-terminus 168 380 1.2E-93 T 11-10-2018 IPR015929 Aconitase B, swivel GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 AMK58_11565 1bc3cf2eca752fd73e23ec4f06382ab0 144 Pfam PF13474 SnoaL-like domain 12 120 1.8E-20 T 11-10-2018 IPR037401 SnoaL-like domain AMK58_11565 1bc3cf2eca752fd73e23ec4f06382ab0 144 Gene3D G3DSA:3.10.450.50 1 130 4.8E-41 T 11-10-2018 AMK58_11565 1bc3cf2eca752fd73e23ec4f06382ab0 144 SUPERFAMILY SSF54427 5 124 3.6E-32 T 11-10-2018 IPR032710 NTF2-like domain superfamily AMK58_16775 193ebcda2ff01be3719326b0446a0190 261 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 254 4.6E-70 T 11-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 AMK58_16775 193ebcda2ff01be3719326b0446a0190 261 SUPERFAMILY SSF56219 2 255 1.7E-80 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMK58_16775 193ebcda2ff01be3719326b0446a0190 261 Gene3D G3DSA:3.60.10.10 1 255 2.7E-72 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMK58_16775 193ebcda2ff01be3719326b0446a0190 261 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 2 254 6.7E-69 T 11-10-2018 AMK58_16775 193ebcda2ff01be3719326b0446a0190 261 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 247 9.6E-21 T 11-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase AMK58_05505 6b44410394ae0d543bd5159497bf60a5 389 Gene3D G3DSA:3.40.640.10 55 278 3.9E-139 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_05505 6b44410394ae0d543bd5159497bf60a5 389 Pfam PF00155 Aminotransferase class I and II 36 380 1.7E-36 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMK58_05505 6b44410394ae0d543bd5159497bf60a5 389 SUPERFAMILY SSF53383 3 385 2.24E-104 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_05505 6b44410394ae0d543bd5159497bf60a5 389 Gene3D G3DSA:3.90.1150.10 6 382 3.9E-139 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_04925 8c4e51b56142721ba0e663bd4d80f570 377 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 17 373 39.801 T 11-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 AMK58_04925 8c4e51b56142721ba0e663bd4d80f570 377 Gene3D G3DSA:2.30.30.280 230 293 1.5E-18 T 11-10-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 AMK58_04925 8c4e51b56142721ba0e663bd4d80f570 377 Gene3D G3DSA:3.40.50.620 5 224 7.3E-73 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_04925 8c4e51b56142721ba0e663bd4d80f570 377 Gene3D G3DSA:2.40.30.10 294 375 8.5E-19 T 11-10-2018 AMK58_04925 8c4e51b56142721ba0e663bd4d80f570 377 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 18 372 2.6E-100 T 11-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 AMK58_04925 8c4e51b56142721ba0e663bd4d80f570 377 Pfam PF03054 tRNA methyl transferase 18 372 1.0E-117 T 11-10-2018 AMK58_04925 8c4e51b56142721ba0e663bd4d80f570 377 SUPERFAMILY SSF52402 16 259 9.7E-52 T 11-10-2018 AMK58_15230 300c23161eb7db559ea945d75df5e9d8 320 SUPERFAMILY SSF53850 100 285 1.09E-5 T 11-10-2018 AMK58_15230 300c23161eb7db559ea945d75df5e9d8 320 Gene3D G3DSA:3.40.190.10 119 246 1.6E-67 T 11-10-2018 AMK58_15230 300c23161eb7db559ea945d75df5e9d8 320 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 45 312 2.1E-44 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 AMK58_15230 300c23161eb7db559ea945d75df5e9d8 320 PIRSF PIRSF017082 1 320 2.1E-72 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 AMK58_15230 300c23161eb7db559ea945d75df5e9d8 320 Gene3D G3DSA:3.40.190.150 25 305 1.6E-67 T 11-10-2018 AMK58_29250 4b3bed153cb82c3fd72a62af983c6917 239 Gene3D G3DSA:3.40.50.150 26 204 9.0E-24 T 11-10-2018 AMK58_29250 4b3bed153cb82c3fd72a62af983c6917 239 Pfam PF13489 Methyltransferase domain 56 197 5.9E-15 T 11-10-2018 AMK58_29250 4b3bed153cb82c3fd72a62af983c6917 239 SUPERFAMILY SSF53335 39 204 5.94E-25 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_08960 b72e1409edaaf24dca04a0ebd1545dc6 292 ProSitePatterns PS01068 OmpA-like domain. 224 269 - T 11-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 AMK58_08960 b72e1409edaaf24dca04a0ebd1545dc6 292 Pfam PF00691 OmpA family 191 284 1.9E-19 T 11-10-2018 IPR006665 OmpA-like domain AMK58_08960 b72e1409edaaf24dca04a0ebd1545dc6 292 SUPERFAMILY SSF103088 186 289 2.09E-29 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMK58_08960 b72e1409edaaf24dca04a0ebd1545dc6 292 Gene3D G3DSA:3.30.1330.60 176 292 8.1E-29 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMK58_08960 b72e1409edaaf24dca04a0ebd1545dc6 292 PRINTS PR01021 OMPA domain signature 237 253 4.4E-14 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMK58_08960 b72e1409edaaf24dca04a0ebd1545dc6 292 PRINTS PR01021 OMPA domain signature 222 237 4.4E-14 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMK58_08960 b72e1409edaaf24dca04a0ebd1545dc6 292 PRINTS PR01021 OMPA domain signature 192 214 4.4E-14 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMK58_23505 3358948ac5ed48222661344e40b52794 382 Pfam PF07687 Peptidase dimerisation domain 170 278 1.7E-19 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain AMK58_23505 3358948ac5ed48222661344e40b52794 382 SUPERFAMILY SSF53187 3 382 6.86E-57 T 11-10-2018 AMK58_23505 3358948ac5ed48222661344e40b52794 382 Gene3D G3DSA:3.40.630.10 11 367 2.6E-99 T 11-10-2018 AMK58_23505 3358948ac5ed48222661344e40b52794 382 Pfam PF01546 Peptidase family M20/M25/M40 66 378 3.7E-34 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 AMK58_23505 3358948ac5ed48222661344e40b52794 382 SUPERFAMILY SSF55031 174 281 1.2E-19 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain AMK58_23505 3358948ac5ed48222661344e40b52794 382 TIGRFAM TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE) 6 375 3.6E-119 T 11-10-2018 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 AMK58_23505 3358948ac5ed48222661344e40b52794 382 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 65 74 - T 11-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 AMK58_23505 3358948ac5ed48222661344e40b52794 382 Gene3D G3DSA:3.30.70.360 174 290 2.6E-99 T 11-10-2018 AMK58_23505 3358948ac5ed48222661344e40b52794 382 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 100 137 - T 11-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 AMK58_29080 f14e69fd6baee683b79864d2949d4d7c 620 SUPERFAMILY SSF50465 314 417 6.71E-33 T 11-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal AMK58_29080 f14e69fd6baee683b79864d2949d4d7c 620 SUPERFAMILY SSF52540 10 235 2.37E-50 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_29080 f14e69fd6baee683b79864d2949d4d7c 620 SUPERFAMILY SSF52540 442 615 9.18E-41 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_29080 f14e69fd6baee683b79864d2949d4d7c 620 Gene3D G3DSA:2.40.30.10 313 417 1.1E-34 T 11-10-2018 AMK58_29080 f14e69fd6baee683b79864d2949d4d7c 620 PRINTS PR00315 GTP-binding elongation factor signature 92 102 4.0E-9 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_29080 f14e69fd6baee683b79864d2949d4d7c 620 PRINTS PR00315 GTP-binding elongation factor signature 145 154 4.0E-9 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_29080 f14e69fd6baee683b79864d2949d4d7c 620 PRINTS PR00315 GTP-binding elongation factor signature 11 24 4.0E-9 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_29080 f14e69fd6baee683b79864d2949d4d7c 620 PRINTS PR00315 GTP-binding elongation factor signature 72 80 4.0E-9 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_29080 f14e69fd6baee683b79864d2949d4d7c 620 PRINTS PR00315 GTP-binding elongation factor signature 108 119 4.0E-9 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_29080 f14e69fd6baee683b79864d2949d4d7c 620 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 444 616 40.423 T 11-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 AMK58_29080 f14e69fd6baee683b79864d2949d4d7c 620 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 433 612 6.5E-74 T 11-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 AMK58_29080 f14e69fd6baee683b79864d2949d4d7c 620 Pfam PF01583 Adenylylsulphate kinase 445 599 1.7E-71 T 11-10-2018 AMK58_29080 f14e69fd6baee683b79864d2949d4d7c 620 Gene3D G3DSA:3.40.50.300 423 619 1.2E-74 T 11-10-2018 AMK58_29080 f14e69fd6baee683b79864d2949d4d7c 620 Pfam PF00009 Elongation factor Tu GTP binding domain 11 195 3.9E-37 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_29080 f14e69fd6baee683b79864d2949d4d7c 620 Gene3D G3DSA:2.40.30.10 225 311 6.1E-19 T 11-10-2018 AMK58_29080 f14e69fd6baee683b79864d2949d4d7c 620 Gene3D G3DSA:3.40.50.300 4 220 2.9E-59 T 11-10-2018 AMK58_29080 f14e69fd6baee683b79864d2949d4d7c 620 Hamap MF_00062 Sulfate adenylyltransferase subunit 1 [cysN]. 1 445 51.507 T 11-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 AMK58_29080 f14e69fd6baee683b79864d2949d4d7c 620 SUPERFAMILY SSF50447 224 311 5.08E-20 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMK58_29080 f14e69fd6baee683b79864d2949d4d7c 620 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 10 416 2.4E-197 T 11-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 AMK58_17620 d902b17a20dfbb5452c4cf1c52479c3b 384 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 100 107 - T 11-10-2018 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 AMK58_17620 d902b17a20dfbb5452c4cf1c52479c3b 384 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 3 220 41.914 T 11-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 AMK58_17620 d902b17a20dfbb5452c4cf1c52479c3b 384 Gene3D G3DSA:3.30.1330.50 225 382 6.0E-66 T 11-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AMK58_17620 d902b17a20dfbb5452c4cf1c52479c3b 384 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 6 218 8.9E-72 T 11-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 AMK58_17620 d902b17a20dfbb5452c4cf1c52479c3b 384 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 261 276 - T 11-10-2018 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AMK58_17620 d902b17a20dfbb5452c4cf1c52479c3b 384 Pfam PF02542 YgbB family 227 380 7.0E-61 T 11-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AMK58_17620 d902b17a20dfbb5452c4cf1c52479c3b 384 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 5 219 2.2E-70 T 11-10-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 AMK58_17620 d902b17a20dfbb5452c4cf1c52479c3b 384 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 227 382 33.358 T 11-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AMK58_17620 d902b17a20dfbb5452c4cf1c52479c3b 384 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 228 380 4.4E-62 T 11-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AMK58_17620 d902b17a20dfbb5452c4cf1c52479c3b 384 Hamap MF_01520 Bifunctional enzyme IspD/IspF [ispDF]. 2 383 44.384 T 11-10-2018 IPR026596 Bifunctional enzyme IspD/IspF KEGG: 00900+4.6.1.12+2.7.7.60|MetaCyc: PWY-7560 AMK58_17620 d902b17a20dfbb5452c4cf1c52479c3b 384 SUPERFAMILY SSF69765 227 381 7.19E-63 T 11-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AMK58_17620 d902b17a20dfbb5452c4cf1c52479c3b 384 SUPERFAMILY SSF53448 4 220 1.64E-60 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_17620 d902b17a20dfbb5452c4cf1c52479c3b 384 Gene3D G3DSA:3.90.550.10 1 223 5.3E-76 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_23315 f8d3059b83161cb6ef1f95e817df06e3 701 SUPERFAMILY SSF48452 181 392 3.66E-18 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_23315 f8d3059b83161cb6ef1f95e817df06e3 701 SMART SM00028 117 149 23.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_23315 f8d3059b83161cb6ef1f95e817df06e3 701 SMART SM00028 366 399 86.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_23315 f8d3059b83161cb6ef1f95e817df06e3 701 SMART SM00028 218 251 9.2 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_23315 f8d3059b83161cb6ef1f95e817df06e3 701 SMART SM00028 150 183 13.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_23315 f8d3059b83161cb6ef1f95e817df06e3 701 SMART SM00028 49 82 140.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_23315 f8d3059b83161cb6ef1f95e817df06e3 701 SMART SM00028 15 48 13.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_23315 f8d3059b83161cb6ef1f95e817df06e3 701 SMART SM00028 83 116 0.37 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_23315 f8d3059b83161cb6ef1f95e817df06e3 701 SMART SM00028 252 285 110.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_23315 f8d3059b83161cb6ef1f95e817df06e3 701 Gene3D G3DSA:1.25.40.10 16 116 3.1E-17 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_23315 f8d3059b83161cb6ef1f95e817df06e3 701 SUPERFAMILY SSF48452 18 213 3.67E-27 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_23315 f8d3059b83161cb6ef1f95e817df06e3 701 Pfam PF13432 Tetratricopeptide repeat 121 184 2.0E-6 T 11-10-2018 AMK58_23315 f8d3059b83161cb6ef1f95e817df06e3 701 Pfam PF13432 Tetratricopeptide repeat 223 286 6.9E-4 T 11-10-2018 AMK58_23315 f8d3059b83161cb6ef1f95e817df06e3 701 Pfam PF13432 Tetratricopeptide repeat 20 77 2.7E-5 T 11-10-2018 AMK58_23315 f8d3059b83161cb6ef1f95e817df06e3 701 Gene3D G3DSA:1.25.40.10 117 401 2.9E-38 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_22590 231cddc327c8bfa450a2a0f392da2df9 603 Gene3D G3DSA:3.40.50.1820 284 572 1.6E-23 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_22590 231cddc327c8bfa450a2a0f392da2df9 603 Pfam PF12146 Serine aminopeptidase, S33 44 146 9.8E-9 T 11-10-2018 IPR022742 Serine aminopeptidase, S33 AMK58_22590 231cddc327c8bfa450a2a0f392da2df9 603 Pfam PF12146 Serine aminopeptidase, S33 304 413 1.4E-8 T 11-10-2018 IPR022742 Serine aminopeptidase, S33 AMK58_22590 231cddc327c8bfa450a2a0f392da2df9 603 SUPERFAMILY SSF53474 16 137 2.6E-19 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_22590 231cddc327c8bfa450a2a0f392da2df9 603 SUPERFAMILY SSF53474 265 569 1.28E-22 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_22590 231cddc327c8bfa450a2a0f392da2df9 603 Gene3D G3DSA:3.40.50.1820 12 197 5.9E-21 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_01290 5261281b0b6490425178f7e6a02f3d52 294 SUPERFAMILY SSF53850 94 290 2.53E-28 T 11-10-2018 AMK58_01290 5261281b0b6490425178f7e6a02f3d52 294 Gene3D G3DSA:3.40.190.10 163 262 2.2E-55 T 11-10-2018 AMK58_01290 5261281b0b6490425178f7e6a02f3d52 294 Gene3D G3DSA:3.40.190.10 97 269 2.2E-55 T 11-10-2018 AMK58_01290 5261281b0b6490425178f7e6a02f3d52 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 1.1E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_01290 5261281b0b6490425178f7e6a02f3d52 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 4.8E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_01290 5261281b0b6490425178f7e6a02f3d52 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 4.8E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_01290 5261281b0b6490425178f7e6a02f3d52 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 4.8E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_01290 5261281b0b6490425178f7e6a02f3d52 294 Gene3D G3DSA:1.10.10.10 2 86 1.5E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_01290 5261281b0b6490425178f7e6a02f3d52 294 Pfam PF03466 LysR substrate binding domain 94 286 1.0E-30 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_01290 5261281b0b6490425178f7e6a02f3d52 294 SUPERFAMILY SSF46785 5 113 1.21E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_25710 27a1994ce31b58d6895e3187b9b7637c 952 Gene3D G3DSA:2.20.25.90 6 68 9.7E-16 T 11-10-2018 AMK58_25710 27a1994ce31b58d6895e3187b9b7637c 952 Gene3D G3DSA:2.40.40.20 748 914 1.5E-24 T 11-10-2018 AMK58_25710 27a1994ce31b58d6895e3187b9b7637c 952 SUPERFAMILY SSF53706 4 726 8.11E-136 T 11-10-2018 AMK58_25710 27a1994ce31b58d6895e3187b9b7637c 952 Pfam PF01568 Molydopterin dinucleotide binding domain 773 860 4.1E-12 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 AMK58_25710 27a1994ce31b58d6895e3187b9b7637c 952 SMART SM00926 9 63 2.0E-19 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_25710 27a1994ce31b58d6895e3187b9b7637c 952 SUPERFAMILY SSF50692 766 919 2.71E-32 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily AMK58_25710 27a1994ce31b58d6895e3187b9b7637c 952 Gene3D G3DSA:3.40.50.740 69 155 1.4E-14 T 11-10-2018 AMK58_25710 27a1994ce31b58d6895e3187b9b7637c 952 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 11 62 6.6E-15 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_25710 27a1994ce31b58d6895e3187b9b7637c 952 Pfam PF00384 Molybdopterin oxidoreductase 67 351 1.9E-22 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_25710 27a1994ce31b58d6895e3187b9b7637c 952 Gene3D G3DSA:3.40.50.740 472 627 1.1E-14 T 11-10-2018 AMK58_27740 8d415dbeba0af7658d4ac4889ae6469b 462 Pfam PF01425 Amidase 27 439 9.7E-108 T 11-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMK58_27740 8d415dbeba0af7658d4ac4889ae6469b 462 ProSitePatterns PS00571 Amidases signature. 154 185 - T 11-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 AMK58_27740 8d415dbeba0af7658d4ac4889ae6469b 462 Gene3D G3DSA:3.90.1300.10 7 450 1.7E-137 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMK58_27740 8d415dbeba0af7658d4ac4889ae6469b 462 SUPERFAMILY SSF75304 3 456 3.79E-131 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMK58_00565 b0cabcdf0d43d3b07f6a7c19cd6feb6b 434 SMART SM00283 170 428 5.1E-45 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_00565 b0cabcdf0d43d3b07f6a7c19cd6feb6b 434 Pfam PF08447 PAS fold 53 135 8.3E-15 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 AMK58_00565 b0cabcdf0d43d3b07f6a7c19cd6feb6b 434 SUPERFAMILY SSF55785 54 149 4.19E-10 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_00565 b0cabcdf0d43d3b07f6a7c19cd6feb6b 434 Gene3D G3DSA:1.10.287.950 146 431 8.5E-53 T 11-10-2018 AMK58_00565 b0cabcdf0d43d3b07f6a7c19cd6feb6b 434 Gene3D G3DSA:3.30.450.20 16 145 4.2E-18 T 11-10-2018 AMK58_00565 b0cabcdf0d43d3b07f6a7c19cd6feb6b 434 SUPERFAMILY SSF58104 158 427 1.02E-60 T 11-10-2018 AMK58_00565 b0cabcdf0d43d3b07f6a7c19cd6feb6b 434 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 272 299 2.2E-24 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_00565 b0cabcdf0d43d3b07f6a7c19cd6feb6b 434 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 301 330 2.2E-24 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_00565 b0cabcdf0d43d3b07f6a7c19cd6feb6b 434 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 349 378 2.2E-24 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_00565 b0cabcdf0d43d3b07f6a7c19cd6feb6b 434 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 194 223 2.2E-24 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_00565 b0cabcdf0d43d3b07f6a7c19cd6feb6b 434 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 242 401 7.0E-33 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_20890 0f76543c48111b69bd754be99527e730 223 SMART SM00014 84 198 4.7E-18 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMK58_20890 0f76543c48111b69bd754be99527e730 223 SUPERFAMILY SSF48317 7 207 5.49E-38 T 11-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily AMK58_20890 0f76543c48111b69bd754be99527e730 223 Gene3D G3DSA:1.20.144.10 25 118 4.3E-8 T 11-10-2018 AMK58_20890 0f76543c48111b69bd754be99527e730 223 Gene3D G3DSA:1.20.144.10 121 215 2.3E-24 T 11-10-2018 AMK58_20890 0f76543c48111b69bd754be99527e730 223 Pfam PF01569 PAP2 superfamily 86 202 9.9E-24 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMK58_15680 ecddf19dad96a8dcc01fcb022d7ed3f8 361 SUPERFAMILY SSF89733 10 352 3.53E-99 T 11-10-2018 IPR036111 Malate/L-sulfolactate/L-lactate dehydrogenase-like superfamily GO:0016491|GO:0055114 AMK58_15680 ecddf19dad96a8dcc01fcb022d7ed3f8 361 Pfam PF02615 Malate/L-lactate dehydrogenase 12 341 9.9E-101 T 11-10-2018 IPR003767 Malate/L-lactate dehydrogenase-like GO:0016491|GO:0055114 AMK58_15680 ecddf19dad96a8dcc01fcb022d7ed3f8 361 Gene3D G3DSA:3.30.1370.60 75 325 7.4E-104 T 11-10-2018 AMK58_15680 ecddf19dad96a8dcc01fcb022d7ed3f8 361 Gene3D G3DSA:1.10.1530.10 17 346 7.4E-104 T 11-10-2018 AMK58_14235 8278f9d036bf4007a3baa398be060647 242 Gene3D G3DSA:1.10.3720.10 44 238 1.0E-24 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_14235 8278f9d036bf4007a3baa398be060647 242 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 67 230 6.3E-24 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_14235 8278f9d036bf4007a3baa398be060647 242 SUPERFAMILY SSF161098 43 227 7.85E-30 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_28590 d8ed5b2e118f208e8b6d5e926dd582af 265 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 4 239 9.1E-95 T 11-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMK58_28590 d8ed5b2e118f208e8b6d5e926dd582af 265 Gene3D G3DSA:3.30.950.10 120 250 1.6E-47 T 11-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 AMK58_28590 d8ed5b2e118f208e8b6d5e926dd582af 265 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 5 217 4.2E-52 T 11-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 AMK58_28590 d8ed5b2e118f208e8b6d5e926dd582af 265 Gene3D G3DSA:3.40.1010.10 2 119 8.3E-46 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 AMK58_28590 d8ed5b2e118f208e8b6d5e926dd582af 265 SUPERFAMILY SSF53790 2 248 4.84E-79 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 AMK58_28590 d8ed5b2e118f208e8b6d5e926dd582af 265 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 84 117 - T 11-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMK58_28590 d8ed5b2e118f208e8b6d5e926dd582af 265 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 9 23 - T 11-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMK58_28990 9ddabbb772b1dcf00cc7179fd9d75862 1250 Gene3D G3DSA:3.90.550.10 938 1234 4.0E-35 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_28990 9ddabbb772b1dcf00cc7179fd9d75862 1250 Pfam PF00535 Glycosyl transferase family 2 971 1124 6.7E-22 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMK58_28990 9ddabbb772b1dcf00cc7179fd9d75862 1250 Gene3D G3DSA:3.40.50.2000 768 927 9.9E-28 T 11-10-2018 AMK58_28990 9ddabbb772b1dcf00cc7179fd9d75862 1250 SUPERFAMILY SSF53756 613 946 1.15E-42 T 11-10-2018 AMK58_28990 9ddabbb772b1dcf00cc7179fd9d75862 1250 Pfam PF00534 Glycosyl transferases group 1 781 940 5.0E-18 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 AMK58_28990 9ddabbb772b1dcf00cc7179fd9d75862 1250 Gene3D G3DSA:3.20.20.80 255 608 3.8E-17 T 11-10-2018 AMK58_28990 9ddabbb772b1dcf00cc7179fd9d75862 1250 Pfam PF14307 Glycosyltransferase WbsX 259 595 1.4E-131 T 11-10-2018 IPR032719 Glycosyltransferase WbsX AMK58_28990 9ddabbb772b1dcf00cc7179fd9d75862 1250 SUPERFAMILY SSF53448 969 1209 1.31E-39 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_28990 9ddabbb772b1dcf00cc7179fd9d75862 1250 Gene3D G3DSA:3.40.50.2000 734 767 9.9E-28 T 11-10-2018 AMK58_10440 6aa4430a2161043f2c2e30e23c7b771e 233 Gene3D G3DSA:3.40.50.790 68 159 3.5E-81 T 11-10-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich AMK58_10440 6aa4430a2161043f2c2e30e23c7b771e 233 Gene3D G3DSA:3.30.190.20 21 225 3.5E-81 T 11-10-2018 AMK58_10440 6aa4430a2161043f2c2e30e23c7b771e 233 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 43.006 T 11-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 AMK58_10440 6aa4430a2161043f2c2e30e23c7b771e 233 PIRSF PIRSF002155 1 227 6.4E-78 T 11-10-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10440 6aa4430a2161043f2c2e30e23c7b771e 233 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 228 3.3E-101 T 11-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 AMK58_10440 6aa4430a2161043f2c2e30e23c7b771e 233 ProSitePatterns PS01199 Ribosomal protein L1 signature. 120 139 - T 11-10-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10440 6aa4430a2161043f2c2e30e23c7b771e 233 SUPERFAMILY SSF56808 7 226 7.06E-82 T 11-10-2018 IPR023674 Ribosomal protein L1-like AMK58_10440 6aa4430a2161043f2c2e30e23c7b771e 233 Pfam PF00687 Ribosomal protein L1p/L10e family 35 220 1.3E-53 T 11-10-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein AMK58_25050 17a630aee971a79dd1ebdd20cc3a4071 374 SUPERFAMILY SSF50969 60 343 2.79E-16 T 11-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like AMK58_25050 17a630aee971a79dd1ebdd20cc3a4071 374 Gene3D G3DSA:2.130.10.10 35 265 1.4E-9 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 AMK58_25050 17a630aee971a79dd1ebdd20cc3a4071 374 PIRSF PIRSF028101 2 373 2.6E-92 T 11-10-2018 IPR008311 Uncharacterised conserved protein UCP028101 AMK58_25050 17a630aee971a79dd1ebdd20cc3a4071 374 Pfam PF07433 Protein of unknown function (DUF1513) 68 372 4.9E-98 T 11-10-2018 IPR008311 Uncharacterised conserved protein UCP028101 AMK58_13465 99791b60a039cac5bdd0bf61de3b6030 253 SUPERFAMILY SSF55166 67 166 2.62E-12 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AMK58_13465 99791b60a039cac5bdd0bf61de3b6030 253 Pfam PF01471 Putative peptidoglycan binding domain 195 250 2.3E-15 T 11-10-2018 IPR002477 Peptidoglycan binding-like AMK58_13465 99791b60a039cac5bdd0bf61de3b6030 253 Pfam PF13539 D-alanyl-D-alanine carboxypeptidase 102 164 6.7E-13 T 11-10-2018 IPR039561 Peptidase M15C GO:0008233 AMK58_13465 99791b60a039cac5bdd0bf61de3b6030 253 Gene3D G3DSA:1.10.101.10 182 253 3.3E-21 T 11-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 AMK58_13465 99791b60a039cac5bdd0bf61de3b6030 253 SUPERFAMILY SSF47090 185 250 2.25E-18 T 11-10-2018 IPR036365 PGBD-like superfamily AMK58_13465 99791b60a039cac5bdd0bf61de3b6030 253 Gene3D G3DSA:3.30.1380.10 93 165 1.1E-7 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AMK58_08925 9ea7ca2690b5610f67a9cd9e3990dc3b 544 ProSitePatterns PS00455 Putative AMP-binding domain signature. 188 199 - T 11-10-2018 IPR020845 AMP-binding, conserved site AMK58_08925 9ea7ca2690b5610f67a9cd9e3990dc3b 544 Pfam PF13193 AMP-binding enzyme C-terminal domain 455 531 8.2E-21 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMK58_08925 9ea7ca2690b5610f67a9cd9e3990dc3b 544 Gene3D G3DSA:3.30.300.310 442 543 7.3E-33 T 11-10-2018 AMK58_08925 9ea7ca2690b5610f67a9cd9e3990dc3b 544 SUPERFAMILY SSF56801 13 543 5.36E-141 T 11-10-2018 AMK58_08925 9ea7ca2690b5610f67a9cd9e3990dc3b 544 Gene3D G3DSA:3.40.50.12780 7 441 1.4E-110 T 11-10-2018 AMK58_08925 9ea7ca2690b5610f67a9cd9e3990dc3b 544 Pfam PF00501 AMP-binding enzyme 27 446 5.5E-91 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMK58_24695 5518d3e38d03396bea2bb63e5ffd86ec 251 Pfam PF13247 4Fe-4S dicluster domain 95 188 6.6E-30 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMK58_24695 5518d3e38d03396bea2bb63e5ffd86ec 251 SUPERFAMILY SSF54862 45 221 1.78E-70 T 11-10-2018 AMK58_24695 5518d3e38d03396bea2bb63e5ffd86ec 251 Gene3D G3DSA:3.30.70.20 47 221 2.6E-67 T 11-10-2018 AMK58_24695 5518d3e38d03396bea2bb63e5ffd86ec 251 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 133 144 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMK58_24695 5518d3e38d03396bea2bb63e5ffd86ec 251 Gene3D G3DSA:3.30.70.20 107 159 2.6E-67 T 11-10-2018 AMK58_09270 5e84bb89ebd6ff98c9e47676e1b3ad8c 159 PIRSF PIRSF003230 12 156 8.7E-42 T 11-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 AMK58_09270 5e84bb89ebd6ff98c9e47676e1b3ad8c 159 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 23 126 1.4E-29 T 11-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 AMK58_09270 5e84bb89ebd6ff98c9e47676e1b3ad8c 159 Pfam PF03061 Thioesterase superfamily 34 118 7.3E-17 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AMK58_09270 5e84bb89ebd6ff98c9e47676e1b3ad8c 159 SUPERFAMILY SSF54637 18 150 4.49E-37 T 11-10-2018 IPR029069 HotDog domain superfamily AMK58_09270 5e84bb89ebd6ff98c9e47676e1b3ad8c 159 Gene3D G3DSA:3.10.129.10 13 154 3.4E-39 T 11-10-2018 AMK58_09270 5e84bb89ebd6ff98c9e47676e1b3ad8c 159 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 20 147 1.3E-43 T 11-10-2018 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 AMK58_07055 3296889f76e4f0d725c66d9e7dd32392 275 Hamap MF_01384 Urease accessory protein UreD [ureD]. 6 259 27.464 T 11-10-2018 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 AMK58_07055 3296889f76e4f0d725c66d9e7dd32392 275 Pfam PF01774 UreD urease accessory protein 48 248 3.5E-49 T 11-10-2018 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 AMK58_08345 f7470c63703c1302e38454872305d29f 170 Gene3D G3DSA:1.20.1260.10 1 165 1.0E-65 T 11-10-2018 IPR012347 Ferritin-like AMK58_08345 f7470c63703c1302e38454872305d29f 170 SUPERFAMILY SSF47240 1 152 4.78E-54 T 11-10-2018 IPR009078 Ferritin-like superfamily AMK58_08345 f7470c63703c1302e38454872305d29f 170 Pfam PF05974 Domain of unknown function (DUF892) 5 161 1.1E-59 T 11-10-2018 IPR010287 Domain of unknown function DUF892 AMK58_17020 99f6787eaa0d6c3b8fea857bf6957e67 621 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 11-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMK58_17020 99f6787eaa0d6c3b8fea857bf6957e67 621 SUPERFAMILY SSF52016 421 612 1.1E-59 T 11-10-2018 AMK58_17020 99f6787eaa0d6c3b8fea857bf6957e67 621 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 4 610 44.844 T 11-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMK58_17020 99f6787eaa0d6c3b8fea857bf6957e67 621 Gene3D G3DSA:3.50.30.80 421 573 1.2E-55 T 11-10-2018 AMK58_17020 99f6787eaa0d6c3b8fea857bf6957e67 621 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 509 520 - T 11-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMK58_17020 99f6787eaa0d6c3b8fea857bf6957e67 621 Pfam PF00920 Dehydratase family 34 607 1.2E-218 T 11-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMK58_17020 99f6787eaa0d6c3b8fea857bf6957e67 621 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 610 9.1E-249 T 11-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMK58_17020 99f6787eaa0d6c3b8fea857bf6957e67 621 SUPERFAMILY SSF143975 3 420 1.83E-133 T 11-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMK58_14500 6f5facbb7db23b4b51ec3ba79b9f495f 634 SUPERFAMILY SSF53756 330 599 7.74E-6 T 11-10-2018 AMK58_14500 6f5facbb7db23b4b51ec3ba79b9f495f 634 Gene3D G3DSA:3.40.50.11380 256 609 1.1E-130 T 11-10-2018 AMK58_14500 6f5facbb7db23b4b51ec3ba79b9f495f 634 SUPERFAMILY SSF48452 17 224 6.64E-43 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_14500 6f5facbb7db23b4b51ec3ba79b9f495f 634 Gene3D G3DSA:3.40.50.2000 422 602 1.1E-130 T 11-10-2018 AMK58_14500 6f5facbb7db23b4b51ec3ba79b9f495f 634 SMART SM00028 77 110 43.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14500 6f5facbb7db23b4b51ec3ba79b9f495f 634 SMART SM00028 9 42 210.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14500 6f5facbb7db23b4b51ec3ba79b9f495f 634 SMART SM00028 111 144 6.8E-4 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14500 6f5facbb7db23b4b51ec3ba79b9f495f 634 SMART SM00028 145 178 0.002 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14500 6f5facbb7db23b4b51ec3ba79b9f495f 634 SMART SM00028 43 76 0.0033 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14500 6f5facbb7db23b4b51ec3ba79b9f495f 634 SMART SM00028 179 212 0.52 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14500 6f5facbb7db23b4b51ec3ba79b9f495f 634 Pfam PF13844 Glycosyl transferase family 41 429 620 9.4E-24 T 11-10-2018 IPR029489 O-GlcNAc transferase, C-terminal KEGG: 00514+2.4.1.255|MetaCyc: PWY-7437|Reactome: R-HSA-3214847|Reactome: R-HSA-5689603 AMK58_14500 6f5facbb7db23b4b51ec3ba79b9f495f 634 Pfam PF13844 Glycosyl transferase family 41 265 412 3.4E-31 T 11-10-2018 IPR029489 O-GlcNAc transferase, C-terminal KEGG: 00514+2.4.1.255|MetaCyc: PWY-7437|Reactome: R-HSA-3214847|Reactome: R-HSA-5689603 AMK58_14500 6f5facbb7db23b4b51ec3ba79b9f495f 634 Pfam PF13414 TPR repeat 152 193 1.1E-6 T 11-10-2018 AMK58_14500 6f5facbb7db23b4b51ec3ba79b9f495f 634 Gene3D G3DSA:1.25.40.10 3 238 2.8E-50 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_14500 6f5facbb7db23b4b51ec3ba79b9f495f 634 Pfam PF13432 Tetratricopeptide repeat 85 143 1.1E-5 T 11-10-2018 AMK58_14500 6f5facbb7db23b4b51ec3ba79b9f495f 634 Pfam PF13432 Tetratricopeptide repeat 14 77 2.4E-9 T 11-10-2018 AMK58_05970 dca9c381d8b62db8da426d821b53e6f8 152 Pfam PF01814 Hemerythrin HHE cation binding domain 4 116 5.6E-12 T 11-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 AMK58_05970 dca9c381d8b62db8da426d821b53e6f8 152 Gene3D G3DSA:1.20.120.520 1 140 1.6E-10 T 11-10-2018 AMK58_14540 b27e211a70cc04a66a87283b37cf47d9 312 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 1.9E-21 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_14540 b27e211a70cc04a66a87283b37cf47d9 312 Gene3D G3DSA:3.40.190.10 91 278 2.0E-34 T 11-10-2018 AMK58_14540 b27e211a70cc04a66a87283b37cf47d9 312 SUPERFAMILY SSF46785 1 86 1.63E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_14540 b27e211a70cc04a66a87283b37cf47d9 312 Gene3D G3DSA:3.40.190.10 164 264 2.0E-34 T 11-10-2018 AMK58_14540 b27e211a70cc04a66a87283b37cf47d9 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.0E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_14540 b27e211a70cc04a66a87283b37cf47d9 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.0E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_14540 b27e211a70cc04a66a87283b37cf47d9 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.0E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_14540 b27e211a70cc04a66a87283b37cf47d9 312 Pfam PF03466 LysR substrate binding domain 87 289 2.1E-35 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_14540 b27e211a70cc04a66a87283b37cf47d9 312 SUPERFAMILY SSF53850 89 294 2.95E-34 T 11-10-2018 AMK58_14540 b27e211a70cc04a66a87283b37cf47d9 312 Gene3D G3DSA:1.10.10.10 1 86 5.3E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_09505 c523bdce984a895518b3d4c2401ee6dc 207 Hamap MF_00155 Cytochrome c oxidase assembly protein CtaG [ctaG]. 1 187 40.539 T 11-10-2018 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_09505 c523bdce984a895518b3d4c2401ee6dc 207 SUPERFAMILY SSF110111 62 185 8.76E-52 T 11-10-2018 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_09505 c523bdce984a895518b3d4c2401ee6dc 207 Pfam PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 36 181 1.3E-59 T 11-10-2018 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_09505 c523bdce984a895518b3d4c2401ee6dc 207 PIRSF PIRSF005413 3 198 1.7E-75 T 11-10-2018 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_09505 c523bdce984a895518b3d4c2401ee6dc 207 Gene3D G3DSA:2.60.370.10 56 198 6.2E-59 T 11-10-2018 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_21895 b2b062559b7585a2fdf63ad20968b4dd 351 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 57 317 2.6E-70 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 AMK58_21895 b2b062559b7585a2fdf63ad20968b4dd 351 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 51 303 7.7E-69 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 AMK58_21895 b2b062559b7585a2fdf63ad20968b4dd 351 PIRSF PIRSF006470 17 343 2.0E-70 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 AMK58_21895 b2b062559b7585a2fdf63ad20968b4dd 351 Gene3D G3DSA:3.40.190.170 43 351 3.8E-105 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily AMK58_26490 4d1c8f107e88659350cb826908cf7dcb 278 Gene3D G3DSA:3.40.50.10490 90 274 2.2E-43 T 11-10-2018 AMK58_26490 4d1c8f107e88659350cb826908cf7dcb 278 SUPERFAMILY SSF46689 2 76 6.09E-20 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_26490 4d1c8f107e88659350cb826908cf7dcb 278 Pfam PF01418 Helix-turn-helix domain, rpiR family 1 74 5.5E-22 T 11-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 AMK58_26490 4d1c8f107e88659350cb826908cf7dcb 278 SUPERFAMILY SSF53697 93 268 2.97E-39 T 11-10-2018 AMK58_26490 4d1c8f107e88659350cb826908cf7dcb 278 Gene3D G3DSA:1.10.10.10 1 76 1.3E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_26490 4d1c8f107e88659350cb826908cf7dcb 278 Pfam PF01380 SIS domain 122 243 2.1E-18 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AMK58_16670 4efdbce60a36df5b31d4fb6d03dd5fcd 346 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 3.6E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_16670 4efdbce60a36df5b31d4fb6d03dd5fcd 346 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 3.6E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_16670 4efdbce60a36df5b31d4fb6d03dd5fcd 346 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 3.6E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_16670 4efdbce60a36df5b31d4fb6d03dd5fcd 346 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 3.6E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_16670 4efdbce60a36df5b31d4fb6d03dd5fcd 346 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 3.6E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_16670 4efdbce60a36df5b31d4fb6d03dd5fcd 346 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 3.6E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_16670 4efdbce60a36df5b31d4fb6d03dd5fcd 346 SUPERFAMILY SSF51735 7 261 2.42E-74 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_16670 4efdbce60a36df5b31d4fb6d03dd5fcd 346 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMK58_16670 4efdbce60a36df5b31d4fb6d03dd5fcd 346 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 193 5.5E-5 T 11-10-2018 AMK58_16670 4efdbce60a36df5b31d4fb6d03dd5fcd 346 Gene3D G3DSA:3.40.50.720 3 269 2.1E-76 T 11-10-2018 AMK58_16670 4efdbce60a36df5b31d4fb6d03dd5fcd 346 Pfam PF00106 short chain dehydrogenase 8 196 2.1E-57 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_16670 4efdbce60a36df5b31d4fb6d03dd5fcd 346 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 1.1E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_16670 4efdbce60a36df5b31d4fb6d03dd5fcd 346 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 1.1E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_16670 4efdbce60a36df5b31d4fb6d03dd5fcd 346 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 1.1E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_18170 28e8db658d7754791cad1d8eb9e1b1d6 142 Pfam PF01850 PIN domain 4 120 2.1E-10 T 11-10-2018 IPR002716 PIN domain AMK58_18170 28e8db658d7754791cad1d8eb9e1b1d6 142 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 3 130 9.507 T 11-10-2018 IPR022907 VapC family GO:0004540 AMK58_18170 28e8db658d7754791cad1d8eb9e1b1d6 142 Gene3D G3DSA:3.40.50.1010 1 127 9.7E-34 T 11-10-2018 AMK58_18170 28e8db658d7754791cad1d8eb9e1b1d6 142 SUPERFAMILY SSF88723 1 123 3.92E-19 T 11-10-2018 IPR029060 PIN-like domain superfamily AMK58_20815 66327287e0573fdb0e1d873dfd494120 1012 Pfam PF00512 His Kinase A (phospho-acceptor) domain 401 466 4.0E-19 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_20815 66327287e0573fdb0e1d873dfd494120 1012 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 513 627 7.7E-27 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_20815 66327287e0573fdb0e1d873dfd494120 1012 SUPERFAMILY SSF47226 757 900 1.57E-17 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMK58_20815 66327287e0573fdb0e1d873dfd494120 1012 SUPERFAMILY SSF55874 455 627 4.85E-44 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_20815 66327287e0573fdb0e1d873dfd494120 1012 PRINTS PR00344 Bacterial sensor protein C-terminal signature 615 628 2.9E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_20815 66327287e0573fdb0e1d873dfd494120 1012 PRINTS PR00344 Bacterial sensor protein C-terminal signature 591 609 2.9E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_20815 66327287e0573fdb0e1d873dfd494120 1012 PRINTS PR00344 Bacterial sensor protein C-terminal signature 574 584 2.9E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_20815 66327287e0573fdb0e1d873dfd494120 1012 PRINTS PR00344 Bacterial sensor protein C-terminal signature 556 570 2.9E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_20815 66327287e0573fdb0e1d873dfd494120 1012 Gene3D G3DSA:3.30.565.10 465 636 4.9E-50 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_20815 66327287e0573fdb0e1d873dfd494120 1012 SMART SM00448 659 774 1.5E-35 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_20815 66327287e0573fdb0e1d873dfd494120 1012 Pfam PF01627 Hpt domain 839 900 9.5E-8 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMK58_20815 66327287e0573fdb0e1d873dfd494120 1012 Gene3D G3DSA:1.20.120.160 803 920 1.7E-12 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMK58_20815 66327287e0573fdb0e1d873dfd494120 1012 Pfam PF00072 Response regulator receiver domain 661 774 8.5E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_20815 66327287e0573fdb0e1d873dfd494120 1012 SMART SM00387 513 631 5.8E-36 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_20815 66327287e0573fdb0e1d873dfd494120 1012 SUPERFAMILY SSF47384 386 466 1.86E-21 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_20815 66327287e0573fdb0e1d873dfd494120 1012 SUPERFAMILY SSF52172 657 784 3.13E-37 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_20815 66327287e0573fdb0e1d873dfd494120 1012 SMART SM00388 401 466 4.6E-22 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_20815 66327287e0573fdb0e1d873dfd494120 1012 Gene3D G3DSA:3.40.50.2300 651 783 3.5E-36 T 11-10-2018 AMK58_20815 66327287e0573fdb0e1d873dfd494120 1012 Gene3D G3DSA:1.10.287.130 367 464 2.6E-28 T 11-10-2018 AMK58_09095 40895a29955753402e57eb89ecd7bf9e 203 PIRSF PIRSF000190 1 203 9.5E-76 T 11-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AMK58_09095 40895a29955753402e57eb89ecd7bf9e 203 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 17 103 8.5E-28 T 11-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AMK58_09095 40895a29955753402e57eb89ecd7bf9e 203 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 156 203 1.0E-15 T 11-10-2018 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AMK58_09095 40895a29955753402e57eb89ecd7bf9e 203 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 166 179 - T 11-10-2018 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AMK58_09095 40895a29955753402e57eb89ecd7bf9e 203 SUPERFAMILY SSF50475 7 203 2.43E-66 T 11-10-2018 AMK58_09095 40895a29955753402e57eb89ecd7bf9e 203 Gene3D G3DSA:2.30.110.10 1 203 1.4E-80 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 AMK58_09095 40895a29955753402e57eb89ecd7bf9e 203 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 2 203 39.277 T 11-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AMK58_09095 40895a29955753402e57eb89ecd7bf9e 203 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 6 201 5.5E-74 T 11-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AMK58_18735 0b7434d8ecbe33b738decd2b921b3afa 248 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 28 241 8.5E-70 T 11-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 AMK58_18735 0b7434d8ecbe33b738decd2b921b3afa 248 Gene3D G3DSA:3.40.190.10 102 204 1.7E-74 T 11-10-2018 AMK58_18735 0b7434d8ecbe33b738decd2b921b3afa 248 SUPERFAMILY SSF53850 21 242 1.98E-58 T 11-10-2018 AMK58_18735 0b7434d8ecbe33b738decd2b921b3afa 248 PIRSF PIRSF004846 1 246 1.7E-51 T 11-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 AMK58_18735 0b7434d8ecbe33b738decd2b921b3afa 248 Gene3D G3DSA:3.40.190.10 27 242 1.7E-74 T 11-10-2018 AMK58_18735 0b7434d8ecbe33b738decd2b921b3afa 248 Pfam PF13531 Bacterial extracellular solute-binding protein 24 242 1.4E-44 T 11-10-2018 AMK58_19535 c02dda29dd45dc7a7d9f87dc937007ab 448 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 9 439 5.3E-160 T 11-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMK58_19535 c02dda29dd45dc7a7d9f87dc937007ab 448 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 350 359 - T 11-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMK58_19535 c02dda29dd45dc7a7d9f87dc937007ab 448 Gene3D G3DSA:3.40.50.12240 13 442 3.9E-141 T 11-10-2018 AMK58_19535 c02dda29dd45dc7a7d9f87dc937007ab 448 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 24 84 6.0E-4 T 11-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMK58_19535 c02dda29dd45dc7a7d9f87dc937007ab 448 SUPERFAMILY SSF52540 96 363 1.39E-90 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_19535 c02dda29dd45dc7a7d9f87dc937007ab 448 SMART SM00382 160 344 1.1E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_19535 c02dda29dd45dc7a7d9f87dc937007ab 448 TIGRFAM TIGR03498 FliI_clade3: flagellar protein export ATPase FliI 22 438 1.8E-198 T 11-10-2018 IPR022426 Flagellum-specific ATP synthase FliI, clade 3 GO:0009288|GO:0016887|GO:0030257|GO:0044781 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMK58_19535 c02dda29dd45dc7a7d9f87dc937007ab 448 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 148 359 1.9E-71 T 11-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMK58_20065 c81ff7cb187f3729effd530cfe792f28 288 TIGRFAM TIGR00758 UDG_fam4: uracil-DNA glycosylase, family 4 115 284 2.4E-63 T 11-10-2018 IPR005273 Uracil-DNA glycosylase family 4 AMK58_20065 c81ff7cb187f3729effd530cfe792f28 288 Gene3D G3DSA:3.40.470.10 89 286 2.0E-68 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMK58_20065 c81ff7cb187f3729effd530cfe792f28 288 Pfam PF03167 Uracil DNA glycosylase superfamily 130 279 2.3E-45 T 11-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMK58_20065 c81ff7cb187f3729effd530cfe792f28 288 SMART SM00986 128 280 4.4E-41 T 11-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMK58_20065 c81ff7cb187f3729effd530cfe792f28 288 SUPERFAMILY SSF52141 103 286 6.87E-62 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMK58_20065 c81ff7cb187f3729effd530cfe792f28 288 SMART SM00987 128 280 4.4E-41 T 11-10-2018 AMK58_09730 5fcf8bf8f09136391a94fdc5aa7ac03c 225 SUPERFAMILY SSF52172 1 180 2.57E-39 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_09730 5fcf8bf8f09136391a94fdc5aa7ac03c 225 Pfam PF00072 Response regulator receiver domain 3 113 5.1E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_09730 5fcf8bf8f09136391a94fdc5aa7ac03c 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 221 4.0E-27 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_09730 5fcf8bf8f09136391a94fdc5aa7ac03c 225 Gene3D G3DSA:1.10.10.10 123 225 1.3E-34 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_09730 5fcf8bf8f09136391a94fdc5aa7ac03c 225 SMART SM00448 1 112 6.3E-38 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_09730 5fcf8bf8f09136391a94fdc5aa7ac03c 225 Gene3D G3DSA:3.40.50.2300 1 122 2.4E-38 T 11-10-2018 AMK58_09730 5fcf8bf8f09136391a94fdc5aa7ac03c 225 SMART SM00862 146 221 1.2E-27 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_04985 95eabc83cdb06bb3a40620dcffceb946 477 Pfam PF00072 Response regulator receiver domain 361 470 1.2E-12 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_04985 95eabc83cdb06bb3a40620dcffceb946 477 SUPERFAMILY SSF55874 157 324 3.8E-36 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_04985 95eabc83cdb06bb3a40620dcffceb946 477 SUPERFAMILY SSF47384 86 167 5.3E-15 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_04985 95eabc83cdb06bb3a40620dcffceb946 477 Gene3D G3DSA:3.30.565.10 174 324 1.1E-33 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_04985 95eabc83cdb06bb3a40620dcffceb946 477 Gene3D G3DSA:1.10.287.130 66 165 9.2E-17 T 11-10-2018 AMK58_04985 95eabc83cdb06bb3a40620dcffceb946 477 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 212 322 3.8E-18 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_04985 95eabc83cdb06bb3a40620dcffceb946 477 SUPERFAMILY SSF52172 356 475 4.98E-24 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_04985 95eabc83cdb06bb3a40620dcffceb946 477 SMART SM00388 101 167 1.2E-13 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_04985 95eabc83cdb06bb3a40620dcffceb946 477 Gene3D G3DSA:3.40.50.2300 348 477 5.2E-21 T 11-10-2018 AMK58_04985 95eabc83cdb06bb3a40620dcffceb946 477 SMART SM00448 359 471 1.3E-20 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_04985 95eabc83cdb06bb3a40620dcffceb946 477 SMART SM00387 211 324 2.4E-26 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_04985 95eabc83cdb06bb3a40620dcffceb946 477 Pfam PF00512 His Kinase A (phospho-acceptor) domain 101 167 1.8E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_04985 95eabc83cdb06bb3a40620dcffceb946 477 PRINTS PR00344 Bacterial sensor protein C-terminal signature 267 277 1.1E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_04985 95eabc83cdb06bb3a40620dcffceb946 477 PRINTS PR00344 Bacterial sensor protein C-terminal signature 249 263 1.1E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_04985 95eabc83cdb06bb3a40620dcffceb946 477 PRINTS PR00344 Bacterial sensor protein C-terminal signature 284 302 1.1E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_04985 95eabc83cdb06bb3a40620dcffceb946 477 PRINTS PR00344 Bacterial sensor protein C-terminal signature 308 321 1.1E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_17210 905256e65eeefc4ff5b11b549a2f6711 160 Gene3D G3DSA:1.10.10.10 1 139 4.7E-37 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_17210 905256e65eeefc4ff5b11b549a2f6711 160 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 11-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site AMK58_17210 905256e65eeefc4ff5b11b549a2f6711 160 SUPERFAMILY SSF46785 3 134 9.6E-34 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_17210 905256e65eeefc4ff5b11b549a2f6711 160 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 3 132 1.5E-30 T 11-10-2018 IPR000944 Transcription regulator Rrf2-type AMK58_17210 905256e65eeefc4ff5b11b549a2f6711 160 Pfam PF02082 Transcriptional regulator 3 83 3.5E-20 T 11-10-2018 IPR000944 Transcription regulator Rrf2-type AMK58_17210 905256e65eeefc4ff5b11b549a2f6711 160 TIGRFAM TIGR02944 suf_reg_Xantho: FeS assembly SUF system regulator 1 131 1.3E-39 T 11-10-2018 IPR014290 SUF system FeS cluster assembly regulator AMK58_12765 76b21a740b42f7da90e518dcd92d7fac 570 Gene3D G3DSA:1.20.1730.10 56 567 3.1E-60 T 11-10-2018 IPR038377 Sodium/glucose symporter superfamily AMK58_12765 76b21a740b42f7da90e518dcd92d7fac 570 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 184 209 - T 11-10-2018 IPR018212 Sodium/solute symporter, conserved site AMK58_12765 76b21a740b42f7da90e518dcd92d7fac 570 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 471 491 - T 11-10-2018 IPR018212 Sodium/solute symporter, conserved site AMK58_12765 76b21a740b42f7da90e518dcd92d7fac 570 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 69 489 7.6E-62 T 11-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 AMK58_12765 76b21a740b42f7da90e518dcd92d7fac 570 Pfam PF00474 Sodium:solute symporter family 69 489 4.3E-115 T 11-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 AMK58_19940 62a4da3f875248806cadbe3d8e9da36d 561 SMART SM00304 316 369 5.1E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_19940 62a4da3f875248806cadbe3d8e9da36d 561 Pfam PF00672 HAMP domain 317 365 1.1E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_19940 62a4da3f875248806cadbe3d8e9da36d 561 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 374 533 4.6E-41 T 11-10-2018 IPR000160 GGDEF domain AMK58_19940 62a4da3f875248806cadbe3d8e9da36d 561 Gene3D G3DSA:3.30.450.20 81 185 1.4E-16 T 11-10-2018 AMK58_19940 62a4da3f875248806cadbe3d8e9da36d 561 SUPERFAMILY SSF55073 383 535 1.1E-47 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_19940 62a4da3f875248806cadbe3d8e9da36d 561 Gene3D G3DSA:3.30.70.270 373 537 9.3E-56 T 11-10-2018 AMK58_19940 62a4da3f875248806cadbe3d8e9da36d 561 SMART SM00267 367 537 5.8E-61 T 11-10-2018 IPR000160 GGDEF domain AMK58_19940 62a4da3f875248806cadbe3d8e9da36d 561 Gene3D G3DSA:1.20.1480.50 284 372 6.9E-8 T 11-10-2018 AMK58_19940 62a4da3f875248806cadbe3d8e9da36d 561 SUPERFAMILY SSF158472 317 365 7.98E-6 T 11-10-2018 AMK58_19940 62a4da3f875248806cadbe3d8e9da36d 561 Pfam PF00990 Diguanylate cyclase, GGDEF domain 378 533 2.8E-46 T 11-10-2018 IPR000160 GGDEF domain AMK58_01330 01e6125e7c2ea3b98649ceb4f715a094 283 SMART SM00871 131 283 1.3E-40 T 11-10-2018 IPR010499 Bacterial transcription activator, effector binding AMK58_01330 01e6125e7c2ea3b98649ceb4f715a094 283 SUPERFAMILY SSF46689 64 115 2.42E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_01330 01e6125e7c2ea3b98649ceb4f715a094 283 Pfam PF06445 GyrI-like small molecule binding domain 131 282 8.7E-39 T 11-10-2018 IPR029442 GyrI-like small molecule binding domain AMK58_01330 01e6125e7c2ea3b98649ceb4f715a094 283 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 80 95 1.1E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMK58_01330 01e6125e7c2ea3b98649ceb4f715a094 283 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 95 111 1.1E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMK58_01330 01e6125e7c2ea3b98649ceb4f715a094 283 Gene3D G3DSA:1.10.10.60 11 115 2.4E-25 T 11-10-2018 AMK58_01330 01e6125e7c2ea3b98649ceb4f715a094 283 Pfam PF12833 Helix-turn-helix domain 34 113 4.5E-19 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMK58_01330 01e6125e7c2ea3b98649ceb4f715a094 283 SUPERFAMILY SSF55136 132 282 1.36E-38 T 11-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily AMK58_01330 01e6125e7c2ea3b98649ceb4f715a094 283 SUPERFAMILY SSF46689 12 59 3.94E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_01330 01e6125e7c2ea3b98649ceb4f715a094 283 SMART SM00342 28 111 2.4E-22 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMK58_01330 01e6125e7c2ea3b98649ceb4f715a094 283 Gene3D G3DSA:3.20.80.10 131 283 5.8E-44 T 11-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily AMK58_01330 01e6125e7c2ea3b98649ceb4f715a094 283 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 65 107 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMK58_21915 40affdbd46beb1ba4544fdba7b38314c 515 SUPERFAMILY SSF52518 339 515 3.93E-37 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMK58_21915 40affdbd46beb1ba4544fdba7b38314c 515 Gene3D G3DSA:3.40.50.970 2 174 7.5E-46 T 11-10-2018 AMK58_21915 40affdbd46beb1ba4544fdba7b38314c 515 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 374 512 1.6E-23 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMK58_21915 40affdbd46beb1ba4544fdba7b38314c 515 SUPERFAMILY SSF52518 1 179 1.91E-43 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMK58_21915 40affdbd46beb1ba4544fdba7b38314c 515 Gene3D G3DSA:3.40.50.970 333 515 4.5E-41 T 11-10-2018 AMK58_21915 40affdbd46beb1ba4544fdba7b38314c 515 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 3 167 1.0E-39 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AMK58_24465 5f2c620c7849ca936e0974bed0eca81f 203 ProSitePatterns PS00622 LuxR-type HTH domain signature. 159 186 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_24465 5f2c620c7849ca936e0974bed0eca81f 203 SUPERFAMILY SSF52172 7 158 6.97E-36 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_24465 5f2c620c7849ca936e0974bed0eca81f 203 Gene3D G3DSA:1.10.10.10 137 202 9.9E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_24465 5f2c620c7849ca936e0974bed0eca81f 203 Gene3D G3DSA:3.40.50.2300 2 136 3.0E-45 T 11-10-2018 AMK58_24465 5f2c620c7849ca936e0974bed0eca81f 203 Pfam PF00196 Bacterial regulatory proteins, luxR family 144 198 8.7E-19 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_24465 5f2c620c7849ca936e0974bed0eca81f 203 Pfam PF00072 Response regulator receiver domain 9 118 2.5E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_24465 5f2c620c7849ca936e0974bed0eca81f 203 SUPERFAMILY SSF46894 138 200 3.1E-17 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMK58_24465 5f2c620c7849ca936e0974bed0eca81f 203 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 159 175 4.3E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_24465 5f2c620c7849ca936e0974bed0eca81f 203 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 175 187 4.3E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_24465 5f2c620c7849ca936e0974bed0eca81f 203 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 145 159 4.3E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_24465 5f2c620c7849ca936e0974bed0eca81f 203 SMART SM00421 142 199 5.5E-20 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_24465 5f2c620c7849ca936e0974bed0eca81f 203 SMART SM00448 7 118 1.0E-30 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_12455 743221f75519687a7b13a1638b601767 327 SUPERFAMILY SSF143865 1 260 7.19E-31 T 11-10-2018 AMK58_12455 743221f75519687a7b13a1638b601767 327 Gene3D G3DSA:1.20.58.340 251 327 9.5E-24 T 11-10-2018 AMK58_12455 743221f75519687a7b13a1638b601767 327 SUPERFAMILY SSF144083 262 324 1.31E-18 T 11-10-2018 AMK58_12455 743221f75519687a7b13a1638b601767 327 Pfam PF01544 CorA-like Mg2+ transporter protein 28 323 5.6E-51 T 11-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 AMK58_19010 c0dfea71bfb117a1548723e02204f4fc 493 SUPERFAMILY SSF75304 4 491 5.63E-154 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMK58_19010 c0dfea71bfb117a1548723e02204f4fc 493 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 16 482 2.7E-170 T 11-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMK58_19010 c0dfea71bfb117a1548723e02204f4fc 493 ProSitePatterns PS00571 Amidases signature. 159 190 - T 11-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 AMK58_19010 c0dfea71bfb117a1548723e02204f4fc 493 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 12 484 90.991 T 11-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMK58_19010 c0dfea71bfb117a1548723e02204f4fc 493 Gene3D G3DSA:3.90.1300.10 4 492 1.6E-184 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMK58_19010 c0dfea71bfb117a1548723e02204f4fc 493 Pfam PF01425 Amidase 25 473 3.2E-144 T 11-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMK58_09200 468180573d3ab7af7ad645eaa892af36 309 Pfam PF00892 EamA-like transporter family 10 144 1.3E-9 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_09200 468180573d3ab7af7ad645eaa892af36 309 Pfam PF00892 EamA-like transporter family 158 291 9.2E-20 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_09200 468180573d3ab7af7ad645eaa892af36 309 SUPERFAMILY SSF103481 192 294 3.27E-12 T 11-10-2018 AMK58_07075 0dd8e9c9374989e88281d6adc0c13533 283 TIGRFAM TIGR00067 glut_race: glutamate racemase 2 261 6.4E-45 T 11-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMK58_07075 0dd8e9c9374989e88281d6adc0c13533 283 SUPERFAMILY SSF53681 124 279 7.41E-29 T 11-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMK58_07075 0dd8e9c9374989e88281d6adc0c13533 283 Gene3D G3DSA:3.40.50.1860 2 273 9.1E-78 T 11-10-2018 AMK58_07075 0dd8e9c9374989e88281d6adc0c13533 283 Hamap MF_00258 Glutamate racemase [murI]. 1 275 28.032 T 11-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMK58_07075 0dd8e9c9374989e88281d6adc0c13533 283 Pfam PF01177 Asp/Glu/Hydantoin racemase 2 230 6.4E-26 T 11-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMK58_07075 0dd8e9c9374989e88281d6adc0c13533 283 Gene3D G3DSA:3.40.50.1860 97 224 9.1E-78 T 11-10-2018 AMK58_07075 0dd8e9c9374989e88281d6adc0c13533 283 SUPERFAMILY SSF53681 2 106 3.11E-26 T 11-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMK58_18670 df907af3dbcbeed04afae56dcc74d3a6 489 SMART SM00387 388 485 0.0018 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_18670 df907af3dbcbeed04afae56dcc74d3a6 489 PRINTS PR00344 Bacterial sensor protein C-terminal signature 433 443 3.5E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_18670 df907af3dbcbeed04afae56dcc74d3a6 489 PRINTS PR00344 Bacterial sensor protein C-terminal signature 446 464 3.5E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_18670 df907af3dbcbeed04afae56dcc74d3a6 489 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 431 481 4.0E-7 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_18670 df907af3dbcbeed04afae56dcc74d3a6 489 Gene3D G3DSA:3.30.565.10 417 482 1.1E-12 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_18670 df907af3dbcbeed04afae56dcc74d3a6 489 SMART SM00388 312 380 2.9E-18 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_18670 df907af3dbcbeed04afae56dcc74d3a6 489 SUPERFAMILY SSF55874 372 481 7.73E-15 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_18670 df907af3dbcbeed04afae56dcc74d3a6 489 SUPERFAMILY SSF47384 295 378 1.77E-19 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_18670 df907af3dbcbeed04afae56dcc74d3a6 489 Gene3D G3DSA:1.10.287.130 256 376 4.0E-21 T 11-10-2018 AMK58_18670 df907af3dbcbeed04afae56dcc74d3a6 489 Pfam PF00512 His Kinase A (phospho-acceptor) domain 314 378 2.5E-16 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_09630 6685ca934c98f114964f77a62cad3d6e 386 TIGRFAM TIGR01365 serC_2: phosphoserine aminotransferase 6 379 2.4E-193 T 11-10-2018 IPR006271 Phosphoserine aminotransferase, Methanosarcina-type GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52 AMK58_09630 6685ca934c98f114964f77a62cad3d6e 386 Gene3D G3DSA:3.40.640.10 26 261 2.6E-41 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_09630 6685ca934c98f114964f77a62cad3d6e 386 PIRSF PIRSF000525 3 380 1.1E-46 T 11-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 AMK58_09630 6685ca934c98f114964f77a62cad3d6e 386 Gene3D G3DSA:3.90.1150.10 264 379 3.6E-13 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_09630 6685ca934c98f114964f77a62cad3d6e 386 SUPERFAMILY SSF53383 7 376 4.3E-68 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_09215 8ae700e904a12110504dcf50fbbafc4b 327 PRINTS PR01713 Nucleotide sugar epimerase signature 218 233 2.5E-22 T 11-10-2018 AMK58_09215 8ae700e904a12110504dcf50fbbafc4b 327 PRINTS PR01713 Nucleotide sugar epimerase signature 29 45 2.5E-22 T 11-10-2018 AMK58_09215 8ae700e904a12110504dcf50fbbafc4b 327 PRINTS PR01713 Nucleotide sugar epimerase signature 286 303 2.5E-22 T 11-10-2018 AMK58_09215 8ae700e904a12110504dcf50fbbafc4b 327 PRINTS PR01713 Nucleotide sugar epimerase signature 247 262 2.5E-22 T 11-10-2018 AMK58_09215 8ae700e904a12110504dcf50fbbafc4b 327 SUPERFAMILY SSF51735 1 324 4.27E-90 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_09215 8ae700e904a12110504dcf50fbbafc4b 327 Gene3D G3DSA:3.40.50.720 1 325 1.7E-94 T 11-10-2018 AMK58_09215 8ae700e904a12110504dcf50fbbafc4b 327 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 253 5.0E-55 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMK58_20500 6dfb75a1eb183789c439b778c2be15f7 98 SUPERFAMILY SSF46785 22 91 7.21E-7 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_20500 6dfb75a1eb183789c439b778c2be15f7 98 Pfam PF13545 Crp-like helix-turn-helix domain 42 77 3.0E-6 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMK58_20500 6dfb75a1eb183789c439b778c2be15f7 98 Gene3D G3DSA:1.10.10.10 2 95 1.9E-7 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_18310 c408e784a834eaff574a20319b338694 272 Pfam PF12697 Alpha/beta hydrolase family 34 258 1.6E-21 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_18310 c408e784a834eaff574a20319b338694 272 PRINTS PR00111 Alpha/beta hydrolase fold signature 215 229 1.9E-15 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_18310 c408e784a834eaff574a20319b338694 272 PRINTS PR00111 Alpha/beta hydrolase fold signature 100 113 1.9E-15 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_18310 c408e784a834eaff574a20319b338694 272 PRINTS PR00111 Alpha/beta hydrolase fold signature 114 127 1.9E-15 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_18310 c408e784a834eaff574a20319b338694 272 PRINTS PR00111 Alpha/beta hydrolase fold signature 56 71 1.9E-15 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_18310 c408e784a834eaff574a20319b338694 272 Gene3D G3DSA:3.40.50.1820 11 270 1.1E-55 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_18310 c408e784a834eaff574a20319b338694 272 SUPERFAMILY SSF53474 8 267 1.89E-51 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_17560 a99a21ee72576c60cc9941ef19873716 441 Hamap MF_00900 GTPase HflX [hflX]. 43 411 46.634 T 11-10-2018 IPR016496 GTPase HflX GO:0005525 AMK58_17560 a99a21ee72576c60cc9941ef19873716 441 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 21 381 1.5E-136 T 11-10-2018 IPR016496 GTPase HflX GO:0005525 AMK58_17560 a99a21ee72576c60cc9941ef19873716 441 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 217 237 1.3E-6 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMK58_17560 a99a21ee72576c60cc9941ef19873716 441 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 284 302 1.3E-6 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMK58_17560 a99a21ee72576c60cc9941ef19873716 441 Pfam PF01926 50S ribosome-binding GTPase 217 338 2.1E-19 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMK58_17560 a99a21ee72576c60cc9941ef19873716 441 SUPERFAMILY SSF52540 215 387 1.56E-38 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_17560 a99a21ee72576c60cc9941ef19873716 441 PIRSF PIRSF006809 14 440 5.3E-145 T 11-10-2018 IPR016496 GTPase HflX GO:0005525 AMK58_17560 a99a21ee72576c60cc9941ef19873716 441 Pfam PF16360 GTP-binding GTPase Middle Region 130 209 3.7E-30 T 11-10-2018 IPR032305 GTP-binding protein, middle domain AMK58_17560 a99a21ee72576c60cc9941ef19873716 441 Gene3D G3DSA:3.40.50.11060 35 154 6.3E-35 T 11-10-2018 AMK58_17560 a99a21ee72576c60cc9941ef19873716 441 Gene3D G3DSA:3.40.50.300 214 388 5.4E-39 T 11-10-2018 AMK58_17560 a99a21ee72576c60cc9941ef19873716 441 Pfam PF13167 GTP-binding GTPase N-terminal 42 127 3.8E-27 T 11-10-2018 IPR025121 GTPase HflX, N-terminal AMK58_26000 9e2e453a34e4af172a260e3a3a5d3ebf 789 SUPERFAMILY SSF56003 133 783 7.85E-178 T 11-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 AMK58_26000 9e2e453a34e4af172a260e3a3a5d3ebf 789 Gene3D G3DSA:3.30.365.10 465 635 2.8E-124 T 11-10-2018 AMK58_26000 9e2e453a34e4af172a260e3a3a5d3ebf 789 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 30 140 6.7E-16 T 11-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMK58_26000 9e2e453a34e4af172a260e3a3a5d3ebf 789 SMART SM01008 29 140 3.4E-33 T 11-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMK58_26000 9e2e453a34e4af172a260e3a3a5d3ebf 789 SUPERFAMILY SSF54665 13 162 4.06E-34 T 11-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily AMK58_26000 9e2e453a34e4af172a260e3a3a5d3ebf 789 Gene3D G3DSA:3.90.1170.50 4 140 1.3E-33 T 11-10-2018 AMK58_26000 9e2e453a34e4af172a260e3a3a5d3ebf 789 Gene3D G3DSA:3.30.365.10 195 291 6.3E-61 T 11-10-2018 AMK58_26000 9e2e453a34e4af172a260e3a3a5d3ebf 789 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 156 720 2.1E-157 T 11-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMK58_26000 9e2e453a34e4af172a260e3a3a5d3ebf 789 Gene3D G3DSA:3.30.365.10 378 760 2.8E-124 T 11-10-2018 AMK58_26000 9e2e453a34e4af172a260e3a3a5d3ebf 789 Gene3D G3DSA:3.30.365.10 154 369 6.3E-61 T 11-10-2018 AMK58_10665 985d92faa543b4556af06be41f75cd2a 1804 SMART SM00829 1218 1682 3.0E-5 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMK58_10665 985d92faa543b4556af06be41f75cd2a 1804 Gene3D G3DSA:3.40.50.720 1521 1710 2.9E-31 T 11-10-2018 AMK58_10665 985d92faa543b4556af06be41f75cd2a 1804 Gene3D G3DSA:3.90.180.10 1711 1803 1.2E-7 T 11-10-2018 AMK58_10665 985d92faa543b4556af06be41f75cd2a 1804 Gene3D G3DSA:3.90.226.10 838 1175 7.2E-74 T 11-10-2018 AMK58_10665 985d92faa543b4556af06be41f75cd2a 1804 Pfam PF00107 Zinc-binding dehydrogenase 1393 1511 5.1E-10 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMK58_10665 985d92faa543b4556af06be41f75cd2a 1804 Gene3D G3DSA:3.90.180.10 1193 1440 1.9E-44 T 11-10-2018 AMK58_10665 985d92faa543b4556af06be41f75cd2a 1804 Gene3D G3DSA:3.40.50.12780 316 702 1.7E-39 T 11-10-2018 AMK58_10665 985d92faa543b4556af06be41f75cd2a 1804 SUPERFAMILY SSF56801 89 827 9.27E-97 T 11-10-2018 AMK58_10665 985d92faa543b4556af06be41f75cd2a 1804 ProSitePatterns PS00455 Putative AMP-binding domain signature. 414 425 - T 11-10-2018 IPR020845 AMP-binding, conserved site AMK58_10665 985d92faa543b4556af06be41f75cd2a 1804 SUPERFAMILY SSF50129 1224 1386 5.8E-21 T 11-10-2018 IPR011032 GroES-like superfamily AMK58_10665 985d92faa543b4556af06be41f75cd2a 1804 SUPERFAMILY SSF52096 867 1170 8.53E-56 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMK58_10665 985d92faa543b4556af06be41f75cd2a 1804 SUPERFAMILY SSF51735 1355 1510 8.78E-18 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_10665 985d92faa543b4556af06be41f75cd2a 1804 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 81 117 6.3E-8 T 11-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 AMK58_10665 985d92faa543b4556af06be41f75cd2a 1804 Gene3D G3DSA:3.40.50.12780 106 302 6.1E-13 T 11-10-2018 AMK58_10665 985d92faa543b4556af06be41f75cd2a 1804 Pfam PF13193 AMP-binding enzyme C-terminal domain 731 799 1.4E-12 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMK58_10665 985d92faa543b4556af06be41f75cd2a 1804 Pfam PF00501 AMP-binding enzyme 154 706 7.4E-49 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMK58_10665 985d92faa543b4556af06be41f75cd2a 1804 Pfam PF00378 Enoyl-CoA hydratase/isomerase 869 1068 6.9E-35 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMK58_10665 985d92faa543b4556af06be41f75cd2a 1804 Gene3D G3DSA:3.30.300.30 703 837 5.3E-21 T 11-10-2018 AMK58_10665 985d92faa543b4556af06be41f75cd2a 1804 SUPERFAMILY SSF51735 1522 1593 7.23E-7 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_10730 7ac10819dda955056866718dcccf78f8 251 SUPERFAMILY SSF52833 79 245 5.79E-49 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_10730 7ac10819dda955056866718dcccf78f8 251 Gene3D G3DSA:3.40.30.10 78 251 6.9E-53 T 11-10-2018 AMK58_10730 7ac10819dda955056866718dcccf78f8 251 Pfam PF01323 DSBA-like thioredoxin domain 102 245 3.7E-28 T 11-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 AMK58_06330 d861061c21bc590e354763d4cbb8626a 175 SUPERFAMILY SSF55729 22 175 1.28E-22 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_06330 d861061c21bc590e354763d4cbb8626a 175 Gene3D G3DSA:3.40.630.30 3 175 1.3E-43 T 11-10-2018 AMK58_06330 d861061c21bc590e354763d4cbb8626a 175 Pfam PF00583 Acetyltransferase (GNAT) family 42 147 8.7E-10 T 11-10-2018 IPR000182 GNAT domain AMK58_25670 d4ed44f81133e94f0d347563938fb0dc 366 Gene3D G3DSA:3.40.630.30 139 306 3.4E-36 T 11-10-2018 AMK58_25670 d4ed44f81133e94f0d347563938fb0dc 366 SUPERFAMILY SSF55729 6 150 1.34E-11 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_25670 d4ed44f81133e94f0d347563938fb0dc 366 Pfam PF13480 Acetyltransferase (GNAT) domain 155 284 1.3E-12 T 11-10-2018 IPR038740 BioF2-like, acetyltransferase domain KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 AMK58_25670 d4ed44f81133e94f0d347563938fb0dc 366 Gene3D G3DSA:3.40.630.30 14 313 3.4E-36 T 11-10-2018 AMK58_25670 d4ed44f81133e94f0d347563938fb0dc 366 SUPERFAMILY SSF55729 154 308 2.3E-29 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_26875 ae9d78c2a51866e9449a4e4aa5d197e7 337 SMART SM00382 52 242 2.6E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_26875 ae9d78c2a51866e9449a4e4aa5d197e7 337 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_26875 ae9d78c2a51866e9449a4e4aa5d197e7 337 Pfam PF00005 ABC transporter 43 185 5.5E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_26875 ae9d78c2a51866e9449a4e4aa5d197e7 337 Gene3D G3DSA:3.40.50.300 14 260 6.6E-68 T 11-10-2018 AMK58_26875 ae9d78c2a51866e9449a4e4aa5d197e7 337 SUPERFAMILY SSF52540 15 250 1.7E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_09850 caf5a514ff3a21db0a7c9cbe66f2c75c 1016 SUPERFAMILY SSF47384 636 710 5.69E-6 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_09850 caf5a514ff3a21db0a7c9cbe66f2c75c 1016 SUPERFAMILY SSF55785 479 615 8.72E-7 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_09850 caf5a514ff3a21db0a7c9cbe66f2c75c 1016 Pfam PF00072 Response regulator receiver domain 899 1007 1.8E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_09850 caf5a514ff3a21db0a7c9cbe66f2c75c 1016 Gene3D G3DSA:3.30.565.10 714 881 1.2E-37 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_09850 caf5a514ff3a21db0a7c9cbe66f2c75c 1016 Gene3D G3DSA:3.40.50.2300 890 1013 1.0E-29 T 11-10-2018 AMK58_09850 caf5a514ff3a21db0a7c9cbe66f2c75c 1016 Gene3D G3DSA:3.30.450.20 42 190 3.1E-7 T 11-10-2018 AMK58_09850 caf5a514ff3a21db0a7c9cbe66f2c75c 1016 PRINTS PR00344 Bacterial sensor protein C-terminal signature 835 853 7.3E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_09850 caf5a514ff3a21db0a7c9cbe66f2c75c 1016 PRINTS PR00344 Bacterial sensor protein C-terminal signature 859 872 7.3E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_09850 caf5a514ff3a21db0a7c9cbe66f2c75c 1016 PRINTS PR00344 Bacterial sensor protein C-terminal signature 804 818 7.3E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_09850 caf5a514ff3a21db0a7c9cbe66f2c75c 1016 PRINTS PR00344 Bacterial sensor protein C-terminal signature 822 832 7.3E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_09850 caf5a514ff3a21db0a7c9cbe66f2c75c 1016 Gene3D G3DSA:3.30.450.20 495 633 1.1E-14 T 11-10-2018 AMK58_09850 caf5a514ff3a21db0a7c9cbe66f2c75c 1016 SUPERFAMILY SSF55874 703 876 8.77E-36 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_09850 caf5a514ff3a21db0a7c9cbe66f2c75c 1016 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 755 873 9.7E-16 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_09850 caf5a514ff3a21db0a7c9cbe66f2c75c 1016 SUPERFAMILY SSF52172 895 1011 2.99E-32 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_09850 caf5a514ff3a21db0a7c9cbe66f2c75c 1016 Pfam PF08448 PAS fold 510 622 5.9E-11 T 11-10-2018 IPR013656 PAS fold-4 AMK58_09850 caf5a514ff3a21db0a7c9cbe66f2c75c 1016 Gene3D G3DSA:3.30.450.20 362 479 4.8E-18 T 11-10-2018 AMK58_09850 caf5a514ff3a21db0a7c9cbe66f2c75c 1016 SMART SM00387 754 875 1.7E-26 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_09850 caf5a514ff3a21db0a7c9cbe66f2c75c 1016 SUPERFAMILY SSF55785 358 481 2.97E-14 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_09850 caf5a514ff3a21db0a7c9cbe66f2c75c 1016 Gene3D G3DSA:1.10.287.130 634 711 4.9E-17 T 11-10-2018 AMK58_09850 caf5a514ff3a21db0a7c9cbe66f2c75c 1016 SMART SM00448 897 1006 2.9E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_24155 084d6483f687516d781c5e4ea64c5fdc 226 SUPERFAMILY SSF48452 7 119 4.43E-11 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_24155 084d6483f687516d781c5e4ea64c5fdc 226 Pfam PF05050 Methyltransferase FkbM domain 116 166 8.5E-6 T 11-10-2018 IPR006342 Methyltransferase FkbM AMK58_24155 084d6483f687516d781c5e4ea64c5fdc 226 Gene3D G3DSA:3.40.50.150 88 174 3.2E-7 T 11-10-2018 AMK58_24155 084d6483f687516d781c5e4ea64c5fdc 226 SUPERFAMILY SSF53335 114 169 1.16E-10 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_24155 084d6483f687516d781c5e4ea64c5fdc 226 Gene3D G3DSA:1.25.40.10 2 87 2.8E-7 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_26215 67ef626d237478072296ee6fae63a728 392 Pfam PF07690 Major Facilitator Superfamily 26 264 3.0E-17 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMK58_26215 67ef626d237478072296ee6fae63a728 392 Gene3D G3DSA:1.20.1250.20 15 390 4.7E-42 T 11-10-2018 AMK58_26215 67ef626d237478072296ee6fae63a728 392 SUPERFAMILY SSF103473 12 391 7.98E-53 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_25330 2ec4eb6436de81d0c0b15e7670abde56 836 Gene3D G3DSA:2.40.40.20 711 835 1.0E-47 T 11-10-2018 AMK58_25330 2ec4eb6436de81d0c0b15e7670abde56 836 Gene3D G3DSA:3.40.228.10 181 710 0.0 T 11-10-2018 AMK58_25330 2ec4eb6436de81d0c0b15e7670abde56 836 SUPERFAMILY SSF53706 44 707 7.59E-204 T 11-10-2018 AMK58_25330 2ec4eb6436de81d0c0b15e7670abde56 836 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 47 98 2.2E-15 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_25330 2ec4eb6436de81d0c0b15e7670abde56 836 SUPERFAMILY SSF50692 696 834 2.9E-42 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily AMK58_25330 2ec4eb6436de81d0c0b15e7670abde56 836 TIGRFAM TIGR01706 NAPA: periplasmic nitrate reductase, large subunit 3 835 0.0 T 11-10-2018 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042597|GO:0055114 KEGG: 00910+1.9.6.1|MetaCyc: PWY-5674 AMK58_25330 2ec4eb6436de81d0c0b15e7670abde56 836 SMART SM00926 45 99 1.1E-11 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_25330 2ec4eb6436de81d0c0b15e7670abde56 836 Pfam PF00384 Molybdopterin oxidoreductase 102 575 3.0E-95 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_25330 2ec4eb6436de81d0c0b15e7670abde56 836 Pfam PF01568 Molydopterin dinucleotide binding domain 721 829 1.9E-25 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 AMK58_25330 2ec4eb6436de81d0c0b15e7670abde56 836 Gene3D G3DSA:3.30.200.210 46 673 0.0 T 11-10-2018 AMK58_25330 2ec4eb6436de81d0c0b15e7670abde56 836 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 50 67 - T 11-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 AMK58_25330 2ec4eb6436de81d0c0b15e7670abde56 836 Gene3D G3DSA:3.40.50.740 102 630 0.0 T 11-10-2018 AMK58_25330 2ec4eb6436de81d0c0b15e7670abde56 836 Hamap MF_01630 Periplasmic nitrate reductase [napA]. 1 835 32.463 T 11-10-2018 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042597|GO:0055114 KEGG: 00910+1.9.6.1|MetaCyc: PWY-5674 AMK58_25330 2ec4eb6436de81d0c0b15e7670abde56 836 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 34 0.0014 T 11-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal AMK58_17885 4c78e87f8c6f5ec82f65158ce15ddc20 177 Pfam PF12802 MarR family 57 114 7.8E-10 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_17885 4c78e87f8c6f5ec82f65158ce15ddc20 177 SUPERFAMILY SSF46785 25 169 2.21E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_17885 4c78e87f8c6f5ec82f65158ce15ddc20 177 Gene3D G3DSA:1.10.10.10 3 167 9.1E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_17885 4c78e87f8c6f5ec82f65158ce15ddc20 177 ProSitePatterns PS01117 MarR-type HTH domain signature. 89 123 - T 11-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site AMK58_17885 4c78e87f8c6f5ec82f65158ce15ddc20 177 SMART SM00347 51 156 3.8E-8 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_05120 4eb9743417a93f506e39c4fe0865d911 155 Gene3D G3DSA:3.40.50.7700 1 154 2.2E-66 T 11-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 AMK58_05120 4eb9743417a93f506e39c4fe0865d911 155 SUPERFAMILY SSF52255 1 151 2.62E-61 T 11-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 AMK58_05120 4eb9743417a93f506e39c4fe0865d911 155 Pfam PF00731 AIR carboxylase 1 143 3.7E-59 T 11-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 AMK58_05120 4eb9743417a93f506e39c4fe0865d911 155 SMART SM01001 1 146 1.5E-91 T 11-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 AMK58_05120 4eb9743417a93f506e39c4fe0865d911 155 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 1 150 29.151 T 11-10-2018 IPR033747 Class I PurE AMK58_05120 4eb9743417a93f506e39c4fe0865d911 155 PIRSF PIRSF001338 1 153 1.2E-61 T 11-10-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 AMK58_05120 4eb9743417a93f506e39c4fe0865d911 155 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 1 149 2.4E-60 T 11-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 AMK58_04900 1fdd509d3d6d44ab5e597e291d236b4d 257 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 126 154 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AMK58_04900 1fdd509d3d6d44ab5e597e291d236b4d 257 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 6 166 2.8E-72 T 11-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 AMK58_04900 1fdd509d3d6d44ab5e597e291d236b4d 257 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 72 108 1.0E-4 T 11-10-2018 IPR001451 Hexapeptide repeat AMK58_04900 1fdd509d3d6d44ab5e597e291d236b4d 257 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 118 150 3.4E-6 T 11-10-2018 IPR001451 Hexapeptide repeat AMK58_04900 1fdd509d3d6d44ab5e597e291d236b4d 257 PIRSF PIRSF000441 1 229 6.9E-82 T 11-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 AMK58_04900 1fdd509d3d6d44ab5e597e291d236b4d 257 Gene3D G3DSA:1.10.3130.10 1 66 6.9E-20 T 11-10-2018 AMK58_04900 1fdd509d3d6d44ab5e597e291d236b4d 257 SUPERFAMILY SSF51161 6 168 4.71E-49 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily AMK58_04900 1fdd509d3d6d44ab5e597e291d236b4d 257 Gene3D G3DSA:2.160.10.10 67 182 9.1E-34 T 11-10-2018 AMK58_14940 23b6407ded650442e3ebcea71c045054 465 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 399 415 - T 11-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMK58_14940 23b6407ded650442e3ebcea71c045054 465 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 23 88 1.1E-14 T 11-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMK58_14940 23b6407ded650442e3ebcea71c045054 465 SUPERFAMILY SSF56014 356 446 3.66E-11 T 11-10-2018 AMK58_14940 23b6407ded650442e3ebcea71c045054 465 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 99 240 4.6E-8 T 11-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMK58_14940 23b6407ded650442e3ebcea71c045054 465 Gene3D G3DSA:3.30.413.10 97 268 1.0E-49 T 11-10-2018 AMK58_14940 23b6407ded650442e3ebcea71c045054 465 Gene3D G3DSA:3.30.413.10 354 453 3.2E-10 T 11-10-2018 AMK58_14940 23b6407ded650442e3ebcea71c045054 465 SUPERFAMILY SSF55124 6 93 3.27E-22 T 11-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMK58_14940 23b6407ded650442e3ebcea71c045054 465 SUPERFAMILY SSF56014 101 243 1.89E-19 T 11-10-2018 AMK58_14940 23b6407ded650442e3ebcea71c045054 465 TIGRFAM TIGR02435 CobG: precorrin-3B synthase 13 418 2.0E-86 T 11-10-2018 IPR012798 Cobalamin (vitamin B12) biosynthesis CobG-like AMK58_14940 23b6407ded650442e3ebcea71c045054 465 Gene3D G3DSA:3.90.480.10 31 334 1.0E-49 T 11-10-2018 AMK58_16380 aeb030d99ad3f01c6f25642b6e667eb8 329 SUPERFAMILY SSF51395 6 299 8.14E-70 T 11-10-2018 AMK58_16380 aeb030d99ad3f01c6f25642b6e667eb8 329 Gene3D G3DSA:1.20.120.1460 245 314 3.3E-21 T 11-10-2018 AMK58_16380 aeb030d99ad3f01c6f25642b6e667eb8 329 TIGRFAM TIGR00742 yjbN: tRNA dihydrouridine synthase A 6 318 1.2E-139 T 11-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 AMK58_16380 aeb030d99ad3f01c6f25642b6e667eb8 329 PIRSF PIRSF006621 2 304 1.7E-71 T 11-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMK58_16380 aeb030d99ad3f01c6f25642b6e667eb8 329 Pfam PF01207 Dihydrouridine synthase (Dus) 8 306 5.0E-83 T 11-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMK58_16380 aeb030d99ad3f01c6f25642b6e667eb8 329 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 87 105 - T 11-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMK58_16380 aeb030d99ad3f01c6f25642b6e667eb8 329 Gene3D G3DSA:3.20.20.70 4 244 1.2E-73 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_16380 aeb030d99ad3f01c6f25642b6e667eb8 329 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 2 320 51.118 T 11-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 AMK58_00850 e4880e54af1484c407941740b1ae733a 313 Gene3D G3DSA:3.90.110.10 142 309 3.6E-50 T 11-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AMK58_00850 e4880e54af1484c407941740b1ae733a 313 Gene3D G3DSA:3.40.50.720 1 141 4.5E-49 T 11-10-2018 AMK58_00850 e4880e54af1484c407941740b1ae733a 313 SUPERFAMILY SSF51735 1 139 7.08E-43 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_00850 e4880e54af1484c407941740b1ae733a 313 TIGRFAM TIGR01771 L-LDH-NAD: L-lactate dehydrogenase 5 303 2.4E-102 T 11-10-2018 IPR011304 L-lactate dehydrogenase GO:0004459|GO:0005737|GO:0055114 KEGG: 00010+1.1.1.27|KEGG: 00270+1.1.1.27|KEGG: 00620+1.1.1.27|KEGG: 00640+1.1.1.27|MetaCyc: PWY-5481|MetaCyc: PWY-6901|Reactome: R-HSA-70268 AMK58_00850 e4880e54af1484c407941740b1ae733a 313 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 1 139 1.2E-35 T 11-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 AMK58_00850 e4880e54af1484c407941740b1ae733a 313 SUPERFAMILY SSF56327 140 306 1.34E-45 T 11-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AMK58_00850 e4880e54af1484c407941740b1ae733a 313 ProSitePatterns PS00064 L-lactate dehydrogenase active site. 169 175 - T 11-10-2018 IPR018177 L-lactate dehydrogenase, active site GO:0004459|GO:0055114 KEGG: 00010+1.1.1.27|KEGG: 00270+1.1.1.27|KEGG: 00620+1.1.1.27|KEGG: 00640+1.1.1.27|MetaCyc: PWY-5481|MetaCyc: PWY-6901|Reactome: R-HSA-70268 AMK58_00850 e4880e54af1484c407941740b1ae733a 313 PIRSF PIRSF000102 1 312 9.6E-94 T 11-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AMK58_00850 e4880e54af1484c407941740b1ae733a 313 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 142 309 9.4E-22 T 11-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 AMK58_00850 e4880e54af1484c407941740b1ae733a 313 PRINTS PR00086 L-lactate dehydrogenase signature 113 133 9.3E-38 T 11-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AMK58_00850 e4880e54af1484c407941740b1ae733a 313 PRINTS PR00086 L-lactate dehydrogenase signature 137 155 9.3E-38 T 11-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AMK58_00850 e4880e54af1484c407941740b1ae733a 313 PRINTS PR00086 L-lactate dehydrogenase signature 167 180 9.3E-38 T 11-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AMK58_00850 e4880e54af1484c407941740b1ae733a 313 PRINTS PR00086 L-lactate dehydrogenase signature 27 51 9.3E-38 T 11-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AMK58_00850 e4880e54af1484c407941740b1ae733a 313 PRINTS PR00086 L-lactate dehydrogenase signature 2 26 9.3E-38 T 11-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AMK58_00850 e4880e54af1484c407941740b1ae733a 313 Hamap MF_00488 L-lactate dehydrogenase [ldh]. 1 309 36.36 T 11-10-2018 IPR011304 L-lactate dehydrogenase GO:0004459|GO:0005737|GO:0055114 KEGG: 00010+1.1.1.27|KEGG: 00270+1.1.1.27|KEGG: 00620+1.1.1.27|KEGG: 00640+1.1.1.27|MetaCyc: PWY-5481|MetaCyc: PWY-6901|Reactome: R-HSA-70268 AMK58_07180 db33c1b409c46c197ec57e1da542cb55 436 SUPERFAMILY SSF141571 125 244 1.96E-32 T 11-10-2018 AMK58_07180 db33c1b409c46c197ec57e1da542cb55 436 Gene3D G3DSA:2.160.20.80 118 257 1.9E-33 T 11-10-2018 AMK58_07180 db33c1b409c46c197ec57e1da542cb55 436 Gene3D G3DSA:2.160.20.80 8 116 1.9E-24 T 11-10-2018 AMK58_07180 db33c1b409c46c197ec57e1da542cb55 436 SUPERFAMILY SSF141571 267 428 1.08E-36 T 11-10-2018 AMK58_07180 db33c1b409c46c197ec57e1da542cb55 436 Pfam PF00805 Pentapeptide repeats (8 copies) 273 309 2.2E-10 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_07180 db33c1b409c46c197ec57e1da542cb55 436 Pfam PF00805 Pentapeptide repeats (8 copies) 391 428 3.0E-11 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_07180 db33c1b409c46c197ec57e1da542cb55 436 Pfam PF00805 Pentapeptide repeats (8 copies) 191 230 2.2E-14 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_07180 db33c1b409c46c197ec57e1da542cb55 436 Pfam PF00805 Pentapeptide repeats (8 copies) 48 83 4.3E-10 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_07180 db33c1b409c46c197ec57e1da542cb55 436 Pfam PF00805 Pentapeptide repeats (8 copies) 315 350 3.5E-9 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_07180 db33c1b409c46c197ec57e1da542cb55 436 Pfam PF00805 Pentapeptide repeats (8 copies) 127 160 3.3E-7 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_07180 db33c1b409c46c197ec57e1da542cb55 436 SUPERFAMILY SSF141571 25 112 7.06E-23 T 11-10-2018 AMK58_07180 db33c1b409c46c197ec57e1da542cb55 436 Gene3D G3DSA:2.160.20.80 258 366 1.7E-24 T 11-10-2018 AMK58_07180 db33c1b409c46c197ec57e1da542cb55 436 Gene3D G3DSA:2.160.20.100 367 429 3.9E-18 T 11-10-2018 AMK58_13080 06b6198698c50826bd769262657146f7 517 Gene3D G3DSA:3.30.70.270 336 510 4.6E-57 T 11-10-2018 AMK58_13080 06b6198698c50826bd769262657146f7 517 Pfam PF00072 Response regulator receiver domain 25 134 2.0E-6 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_13080 06b6198698c50826bd769262657146f7 517 Gene3D G3DSA:3.40.50.2300 24 157 9.4E-12 T 11-10-2018 AMK58_13080 06b6198698c50826bd769262657146f7 517 Pfam PF11849 Domain of unknown function (DUF3369) 145 318 4.5E-48 T 11-10-2018 IPR021800 Domain of unknown function DUF3369 AMK58_13080 06b6198698c50826bd769262657146f7 517 Pfam PF00990 Diguanylate cyclase, GGDEF domain 347 504 5.7E-42 T 11-10-2018 IPR000160 GGDEF domain AMK58_13080 06b6198698c50826bd769262657146f7 517 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 343 508 1.5E-48 T 11-10-2018 IPR000160 GGDEF domain AMK58_13080 06b6198698c50826bd769262657146f7 517 SMART SM00267 336 508 5.8E-61 T 11-10-2018 IPR000160 GGDEF domain AMK58_13080 06b6198698c50826bd769262657146f7 517 SUPERFAMILY SSF55073 352 509 4.79E-48 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_13080 06b6198698c50826bd769262657146f7 517 SUPERFAMILY SSF52172 21 159 1.85E-10 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_03335 d0eeb47b06218165f44e67dfa1cbab56 346 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 155 175 - T 11-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 AMK58_03335 d0eeb47b06218165f44e67dfa1cbab56 346 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 167 185 6.8E-41 T 11-10-2018 AMK58_03335 d0eeb47b06218165f44e67dfa1cbab56 346 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 259 275 6.8E-41 T 11-10-2018 AMK58_03335 d0eeb47b06218165f44e67dfa1cbab56 346 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 27 46 6.8E-41 T 11-10-2018 AMK58_03335 d0eeb47b06218165f44e67dfa1cbab56 346 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 125 143 6.8E-41 T 11-10-2018 AMK58_03335 d0eeb47b06218165f44e67dfa1cbab56 346 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 286 308 6.8E-41 T 11-10-2018 AMK58_03335 d0eeb47b06218165f44e67dfa1cbab56 346 Gene3D G3DSA:3.50.50.60 137 267 1.9E-123 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_03335 d0eeb47b06218165f44e67dfa1cbab56 346 Gene3D G3DSA:3.50.50.60 27 327 1.9E-123 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_03335 d0eeb47b06218165f44e67dfa1cbab56 346 SUPERFAMILY SSF51905 19 333 8.64E-56 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_03335 d0eeb47b06218165f44e67dfa1cbab56 346 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 59 74 4.0E-80 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMK58_03335 d0eeb47b06218165f44e67dfa1cbab56 346 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 126 134 4.0E-80 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMK58_03335 d0eeb47b06218165f44e67dfa1cbab56 346 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 148 160 4.0E-80 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMK58_03335 d0eeb47b06218165f44e67dfa1cbab56 346 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 296 314 4.0E-80 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMK58_03335 d0eeb47b06218165f44e67dfa1cbab56 346 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 26 48 4.0E-80 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMK58_03335 d0eeb47b06218165f44e67dfa1cbab56 346 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 80 90 4.0E-80 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMK58_03335 d0eeb47b06218165f44e67dfa1cbab56 346 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 163 187 4.0E-80 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMK58_03335 d0eeb47b06218165f44e67dfa1cbab56 346 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 215 231 4.0E-80 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMK58_03335 d0eeb47b06218165f44e67dfa1cbab56 346 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 261 282 4.0E-80 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMK58_03335 d0eeb47b06218165f44e67dfa1cbab56 346 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 26 322 1.2E-54 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMK58_03335 d0eeb47b06218165f44e67dfa1cbab56 346 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 26 333 1.5E-126 T 11-10-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 AMK58_17080 c72f55646924340156cdfad9a30f18a9 521 Gene3D G3DSA:1.20.1440.230 427 520 3.6E-26 T 11-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_17080 c72f55646924340156cdfad9a30f18a9 521 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 267 282 - T 11-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_17080 c72f55646924340156cdfad9a30f18a9 521 Gene3D G3DSA:3.10.20.600 332 426 9.6E-22 T 11-10-2018 AMK58_17080 c72f55646924340156cdfad9a30f18a9 521 SUPERFAMILY SSF142019 100 340 3.27E-86 T 11-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_17080 c72f55646924340156cdfad9a30f18a9 521 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 431 512 3.3E-30 T 11-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_17080 c72f55646924340156cdfad9a30f18a9 521 SUPERFAMILY SSF142984 343 424 1.57E-19 T 11-10-2018 AMK58_17080 c72f55646924340156cdfad9a30f18a9 521 SMART SM00928 429 474 8.2E-19 T 11-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_17080 c72f55646924340156cdfad9a30f18a9 521 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 148 319 5.4E-44 T 11-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_17080 c72f55646924340156cdfad9a30f18a9 521 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 442 453 - T 11-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_17080 c72f55646924340156cdfad9a30f18a9 521 Gene3D G3DSA:3.40.50.11540 153 331 8.8E-70 T 11-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_17080 c72f55646924340156cdfad9a30f18a9 521 SUPERFAMILY SSF140490 425 513 1.06E-29 T 11-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_00800 6e7f6f7bd35cd687a57179f8d69b9fbf 344 Pfam PF13353 4Fe-4S single cluster domain 98 163 5.1E-5 T 11-10-2018 AMK58_00800 6e7f6f7bd35cd687a57179f8d69b9fbf 344 TIGRFAM TIGR03822 AblA_like_2: lysine-2,3-aminomutase-related protein 6 319 1.3E-149 T 11-10-2018 IPR022447 Lysine-2,3-aminomutase-related AMK58_00800 6e7f6f7bd35cd687a57179f8d69b9fbf 344 Pfam PF04055 Radical SAM superfamily 97 246 6.1E-11 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMK58_00800 6e7f6f7bd35cd687a57179f8d69b9fbf 344 Gene3D G3DSA:3.20.20.70 31 316 6.4E-97 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_00800 6e7f6f7bd35cd687a57179f8d69b9fbf 344 PIRSF PIRSF004911 1 343 1.0E-118 T 11-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase AMK58_00800 6e7f6f7bd35cd687a57179f8d69b9fbf 344 TIGRFAM TIGR00238 TIGR00238: KamA family protein 23 310 2.7E-80 T 11-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase AMK58_00800 6e7f6f7bd35cd687a57179f8d69b9fbf 344 SUPERFAMILY SSF102114 82 321 2.22E-33 T 11-10-2018 AMK58_02400 e5b6c6ce95fdf54d2670f4611c2ae78d 164 SUPERFAMILY SSF50341 4 144 7.32E-39 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 AMK58_02400 e5b6c6ce95fdf54d2670f4611c2ae78d 164 Gene3D G3DSA:2.40.50.180 28 94 3.8E-37 T 11-10-2018 AMK58_02400 e5b6c6ce95fdf54d2670f4611c2ae78d 164 Pfam PF01584 CheW-like domain 9 144 9.9E-35 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMK58_02400 e5b6c6ce95fdf54d2670f4611c2ae78d 164 Gene3D G3DSA:2.30.30.40 11 137 3.8E-37 T 11-10-2018 AMK58_02400 e5b6c6ce95fdf54d2670f4611c2ae78d 164 SMART SM00260 5 143 4.1E-41 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMK58_03710 fc0c5be5d04afe412bac4278aa385f38 341 Gene3D G3DSA:3.20.20.70 9 341 3.5E-84 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_03710 fc0c5be5d04afe412bac4278aa385f38 341 Pfam PF04055 Radical SAM superfamily 25 186 1.4E-27 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMK58_03710 fc0c5be5d04afe412bac4278aa385f38 341 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 12 341 5.8E-110 T 11-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMK58_03710 fc0c5be5d04afe412bac4278aa385f38 341 Pfam PF06463 Molybdenum Cofactor Synthesis C 194 320 4.6E-38 T 11-10-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMK58_03710 fc0c5be5d04afe412bac4278aa385f38 341 Pfam PF13353 4Fe-4S single cluster domain 28 130 1.2E-8 T 11-10-2018 AMK58_03710 fc0c5be5d04afe412bac4278aa385f38 341 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 12 341 39.545 T 11-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMK58_03710 fc0c5be5d04afe412bac4278aa385f38 341 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 27 38 - T 11-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMK58_03710 fc0c5be5d04afe412bac4278aa385f38 341 SMART SM00729 21 229 3.6E-6 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMK58_03710 fc0c5be5d04afe412bac4278aa385f38 341 SUPERFAMILY SSF102114 11 286 6.93E-80 T 11-10-2018 AMK58_03530 0879888436d367a93af9c04261e03bc1 236 ProSitePatterns PS00211 ABC transporters family signature. 119 133 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_03530 0879888436d367a93af9c04261e03bc1 236 Pfam PF00005 ABC transporter 17 146 1.1E-22 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_03530 0879888436d367a93af9c04261e03bc1 236 SMART SM00382 25 196 2.5E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_03530 0879888436d367a93af9c04261e03bc1 236 SUPERFAMILY SSF52540 9 202 6.95E-54 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_03530 0879888436d367a93af9c04261e03bc1 236 Gene3D G3DSA:3.40.50.300 1 224 5.7E-54 T 11-10-2018 AMK58_19725 cb140dfce43fbf35d4cb38452d8ce2e6 207 Pfam PF09335 SNARE associated Golgi protein 40 161 2.0E-18 T 11-10-2018 IPR032816 SNARE associated Golgi protein AMK58_12730 ac669a9d8c8e7159673055957703fdbf 339 SUPERFAMILY SSF53335 107 324 2.17E-23 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_12730 ac669a9d8c8e7159673055957703fdbf 339 Pfam PF13489 Methyltransferase domain 123 271 1.9E-8 T 11-10-2018 AMK58_12730 ac669a9d8c8e7159673055957703fdbf 339 Gene3D G3DSA:3.40.50.150 105 338 7.7E-20 T 11-10-2018 AMK58_27285 536051376fd46ab501ac03f53a2e2691 330 TIGRFAM TIGR00433 bioB: biotin synthase 27 324 3.5E-119 T 11-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AMK58_27285 536051376fd46ab501ac03f53a2e2691 330 SMART SM00729 56 268 2.8E-35 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMK58_27285 536051376fd46ab501ac03f53a2e2691 330 SMART SM00876 233 325 8.0E-43 T 11-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AMK58_27285 536051376fd46ab501ac03f53a2e2691 330 SUPERFAMILY SSF102114 19 324 2.75E-90 T 11-10-2018 AMK58_27285 536051376fd46ab501ac03f53a2e2691 330 Hamap MF_01694 Biotin synthase [bioB]. 18 326 42.298 T 11-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AMK58_27285 536051376fd46ab501ac03f53a2e2691 330 Gene3D G3DSA:3.20.20.70 17 326 5.9E-125 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_27285 536051376fd46ab501ac03f53a2e2691 330 Pfam PF04055 Radical SAM superfamily 63 216 2.2E-15 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMK58_27285 536051376fd46ab501ac03f53a2e2691 330 PIRSF PIRSF001619 2 329 4.8E-129 T 11-10-2018 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AMK58_27285 536051376fd46ab501ac03f53a2e2691 330 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 233 324 1.3E-16 T 11-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AMK58_00330 8cd6262dde5f4084947bbcd8e4905799 856 PRINTS PR00985 Leucyl-tRNA synthetase signature 184 197 1.4E-45 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMK58_00330 8cd6262dde5f4084947bbcd8e4905799 856 PRINTS PR00985 Leucyl-tRNA synthetase signature 528 550 1.4E-45 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMK58_00330 8cd6262dde5f4084947bbcd8e4905799 856 PRINTS PR00985 Leucyl-tRNA synthetase signature 561 571 1.4E-45 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMK58_00330 8cd6262dde5f4084947bbcd8e4905799 856 PRINTS PR00985 Leucyl-tRNA synthetase signature 489 507 1.4E-45 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMK58_00330 8cd6262dde5f4084947bbcd8e4905799 856 PRINTS PR00985 Leucyl-tRNA synthetase signature 126 143 1.4E-45 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMK58_00330 8cd6262dde5f4084947bbcd8e4905799 856 PRINTS PR00985 Leucyl-tRNA synthetase signature 152 168 1.4E-45 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMK58_00330 8cd6262dde5f4084947bbcd8e4905799 856 PRINTS PR00985 Leucyl-tRNA synthetase signature 214 233 1.4E-45 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMK58_00330 8cd6262dde5f4084947bbcd8e4905799 856 Gene3D G3DSA:3.10.20.590 795 856 9.2E-23 T 11-10-2018 AMK58_00330 8cd6262dde5f4084947bbcd8e4905799 856 Gene3D G3DSA:3.90.740.10 226 416 0.0 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AMK58_00330 8cd6262dde5f4084947bbcd8e4905799 856 Pfam PF09334 tRNA synthetases class I (M) 36 170 2.3E-18 T 11-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMK58_00330 8cd6262dde5f4084947bbcd8e4905799 856 Gene3D G3DSA:1.10.730.10 7 788 0.0 T 11-10-2018 AMK58_00330 8cd6262dde5f4084947bbcd8e4905799 856 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 220 405 8.2E-68 T 11-10-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 AMK58_00330 8cd6262dde5f4084947bbcd8e4905799 856 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 41 52 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMK58_00330 8cd6262dde5f4084947bbcd8e4905799 856 Gene3D G3DSA:3.40.50.620 32 570 0.0 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_00330 8cd6262dde5f4084947bbcd8e4905799 856 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 4 856 0.0 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMK58_00330 8cd6262dde5f4084947bbcd8e4905799 856 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 615 655 9.9E-9 T 11-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMK58_00330 8cd6262dde5f4084947bbcd8e4905799 856 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 420 576 1.0E-5 T 11-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMK58_00330 8cd6262dde5f4084947bbcd8e4905799 856 SUPERFAMILY SSF47323 659 856 1.2E-35 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMK58_00330 8cd6262dde5f4084947bbcd8e4905799 856 Gene3D G3DSA:3.10.330.110 571 625 0.0 T 11-10-2018 AMK58_00330 8cd6262dde5f4084947bbcd8e4905799 856 SUPERFAMILY SSF50677 225 417 3.87E-48 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AMK58_00330 8cd6262dde5f4084947bbcd8e4905799 856 SUPERFAMILY SSF52374 3 665 1.52E-149 T 11-10-2018 AMK58_00330 8cd6262dde5f4084947bbcd8e4905799 856 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 3 856 23.025 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMK58_00330 8cd6262dde5f4084947bbcd8e4905799 856 Pfam PF08264 Anticodon-binding domain of tRNA 701 818 4.0E-19 T 11-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 AMK58_26630 3bf06f26fa23a5ecc10ad855d315da30 325 Pfam PF00583 Acetyltransferase (GNAT) family 193 293 5.6E-11 T 11-10-2018 IPR000182 GNAT domain AMK58_26630 3bf06f26fa23a5ecc10ad855d315da30 325 SUPERFAMILY SSF46785 13 147 5.85E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_26630 3bf06f26fa23a5ecc10ad855d315da30 325 Gene3D G3DSA:3.40.630.30 164 306 1.3E-20 T 11-10-2018 AMK58_26630 3bf06f26fa23a5ecc10ad855d315da30 325 SMART SM00347 32 132 9.1E-4 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_26630 3bf06f26fa23a5ecc10ad855d315da30 325 SUPERFAMILY SSF55729 171 307 3.09E-21 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_26630 3bf06f26fa23a5ecc10ad855d315da30 325 Pfam PF12802 MarR family 39 95 1.3E-7 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_26630 3bf06f26fa23a5ecc10ad855d315da30 325 Gene3D G3DSA:1.10.10.10 5 149 1.0E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_13155 b90b29350f701ff702611bdd574876e6 96 Gene3D G3DSA:2.30.33.40 1 96 1.9E-40 T 11-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 AMK58_13155 b90b29350f701ff702611bdd574876e6 96 SMART SM00883 2 94 3.3E-61 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMK58_13155 b90b29350f701ff702611bdd574876e6 96 PRINTS PR00297 10kDa chaperonin signature 81 94 1.5E-34 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMK58_13155 b90b29350f701ff702611bdd574876e6 96 PRINTS PR00297 10kDa chaperonin signature 3 18 1.5E-34 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMK58_13155 b90b29350f701ff702611bdd574876e6 96 PRINTS PR00297 10kDa chaperonin signature 60 72 1.5E-34 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMK58_13155 b90b29350f701ff702611bdd574876e6 96 PRINTS PR00297 10kDa chaperonin signature 25 46 1.5E-34 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMK58_13155 b90b29350f701ff702611bdd574876e6 96 Hamap MF_00580 10 kDa chaperonin [groS]. 2 95 27.403 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMK58_13155 b90b29350f701ff702611bdd574876e6 96 Pfam PF00166 Chaperonin 10 Kd subunit 2 94 3.4E-37 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMK58_13155 b90b29350f701ff702611bdd574876e6 96 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 11-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 AMK58_13155 b90b29350f701ff702611bdd574876e6 96 SUPERFAMILY SSF50129 1 95 2.64E-36 T 11-10-2018 IPR011032 GroES-like superfamily AMK58_17735 e6bb333b96bd7b15370842abcb10e60a 883 ProSitePatterns PS00109 Tyrosine protein kinases specific active-site signature. 746 758 - T 11-10-2018 IPR008266 Tyrosine-protein kinase, active site GO:0004672|GO:0006468 AMK58_17735 e6bb333b96bd7b15370842abcb10e60a 883 Gene3D G3DSA:3.30.200.20 565 708 8.7E-58 T 11-10-2018 AMK58_17735 e6bb333b96bd7b15370842abcb10e60a 883 Gene3D G3DSA:1.10.510.10 709 877 8.7E-58 T 11-10-2018 AMK58_17735 e6bb333b96bd7b15370842abcb10e60a 883 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 612 635 - T 11-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 AMK58_17735 e6bb333b96bd7b15370842abcb10e60a 883 Pfam PF00069 Protein kinase domain 608 826 1.3E-31 T 11-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMK58_17735 e6bb333b96bd7b15370842abcb10e60a 883 SUPERFAMILY SSF56112 594 874 2.7E-50 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily AMK58_22495 974a1ee622c76745920ebf1b03b78a8c 400 SUPERFAMILY SSF89796 10 400 2.49E-139 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily AMK58_22495 974a1ee622c76745920ebf1b03b78a8c 400 Gene3D G3DSA:3.30.1540.10 239 330 6.3E-142 T 11-10-2018 AMK58_22495 974a1ee622c76745920ebf1b03b78a8c 400 Pfam PF02515 CoA-transferase family III 13 377 6.5E-131 T 11-10-2018 IPR003673 CoA-transferase family III GO:0003824 AMK58_22495 974a1ee622c76745920ebf1b03b78a8c 400 Gene3D G3DSA:3.40.50.10540 12 392 6.3E-142 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily AMK58_00875 1f2a783dafe760bf211dd2388bc997c8 248 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 24 246 4.7E-78 T 11-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 AMK58_00875 1f2a783dafe760bf211dd2388bc997c8 248 SUPERFAMILY SSF53335 16 245 2.3E-42 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_00875 1f2a783dafe760bf211dd2388bc997c8 248 Gene3D G3DSA:3.40.50.150 30 248 2.0E-72 T 11-10-2018 AMK58_00875 1f2a783dafe760bf211dd2388bc997c8 248 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 35 50 - T 11-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 AMK58_00875 1f2a783dafe760bf211dd2388bc997c8 248 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 155 169 - T 11-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 AMK58_00875 1f2a783dafe760bf211dd2388bc997c8 248 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 15 247 36.459 T 11-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 AMK58_00875 1f2a783dafe760bf211dd2388bc997c8 248 Pfam PF01209 ubiE/COQ5 methyltransferase family 19 247 5.3E-80 T 11-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 AMK58_21995 13b5d5efd7218cfc6179a83b66b2130b 746 SUPERFAMILY SSF51735 7 156 4.6E-40 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_21995 13b5d5efd7218cfc6179a83b66b2130b 746 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 139 202 6.8E-8 T 11-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 AMK58_21995 13b5d5efd7218cfc6179a83b66b2130b 746 Gene3D G3DSA:3.40.50.720 2 134 4.3E-31 T 11-10-2018 AMK58_21995 13b5d5efd7218cfc6179a83b66b2130b 746 SUPERFAMILY SSF55347 134 303 2.45E-24 T 11-10-2018 AMK58_21995 13b5d5efd7218cfc6179a83b66b2130b 746 SUPERFAMILY SSF51735 346 710 4.58E-56 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_21995 13b5d5efd7218cfc6179a83b66b2130b 746 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 8 126 4.9E-22 T 11-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMK58_21995 13b5d5efd7218cfc6179a83b66b2130b 746 Gene3D G3DSA:3.30.360.10 135 332 8.2E-38 T 11-10-2018 AMK58_21995 13b5d5efd7218cfc6179a83b66b2130b 746 Gene3D G3DSA:3.90.25.10 671 712 5.2E-5 T 11-10-2018 AMK58_21995 13b5d5efd7218cfc6179a83b66b2130b 746 Gene3D G3DSA:3.40.50.720 340 634 3.8E-57 T 11-10-2018 AMK58_21995 13b5d5efd7218cfc6179a83b66b2130b 746 Pfam PF01370 NAD dependent epimerase/dehydratase family 351 567 3.1E-24 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMK58_26975 417e96869cbda9d5553a17023f845d18 62 Pfam PF01381 Helix-turn-helix 5 57 4.5E-18 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMK58_26975 417e96869cbda9d5553a17023f845d18 62 Gene3D G3DSA:1.10.260.40 1 62 4.2E-26 T 11-10-2018 AMK58_26975 417e96869cbda9d5553a17023f845d18 62 SMART SM00530 4 59 1.2E-17 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMK58_26975 417e96869cbda9d5553a17023f845d18 62 SUPERFAMILY SSF47413 3 61 5.09E-18 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMK58_21935 5271aba36811df8ea407d7e8c3166f47 554 Pfam PF00005 ABC transporter 27 184 6.5E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_21935 5271aba36811df8ea407d7e8c3166f47 554 SMART SM00382 312 503 1.6E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_21935 5271aba36811df8ea407d7e8c3166f47 554 SMART SM00382 35 234 2.6E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_21935 5271aba36811df8ea407d7e8c3166f47 554 ProSitePatterns PS00211 ABC transporters family signature. 426 440 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_21935 5271aba36811df8ea407d7e8c3166f47 554 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_21935 5271aba36811df8ea407d7e8c3166f47 554 SUPERFAMILY SSF52540 278 525 1.02E-74 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_21935 5271aba36811df8ea407d7e8c3166f47 554 Gene3D G3DSA:3.40.50.300 292 528 7.4E-71 T 11-10-2018 AMK58_21935 5271aba36811df8ea407d7e8c3166f47 554 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 270 2.8E-7 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMK58_21935 5271aba36811df8ea407d7e8c3166f47 554 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 505 530 4.1E-5 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMK58_21935 5271aba36811df8ea407d7e8c3166f47 554 Pfam PF00005 ABC transporter 304 453 8.9E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_21935 5271aba36811df8ea407d7e8c3166f47 554 Gene3D G3DSA:3.40.50.300 4 288 1.9E-87 T 11-10-2018 AMK58_21935 5271aba36811df8ea407d7e8c3166f47 554 SUPERFAMILY SSF52540 6 256 1.25E-65 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_24395 cb68d882e0c6274f41c4c0a587c73695 239 SMART SM00345 17 75 1.0E-19 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_24395 cb68d882e0c6274f41c4c0a587c73695 239 SUPERFAMILY SSF46785 6 96 5.88E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_24395 cb68d882e0c6274f41c4c0a587c73695 239 SMART SM00895 85 209 2.5E-16 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_24395 cb68d882e0c6274f41c4c0a587c73695 239 Gene3D G3DSA:1.20.120.530 78 216 7.6E-25 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_24395 cb68d882e0c6274f41c4c0a587c73695 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 65 2.9E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_24395 cb68d882e0c6274f41c4c0a587c73695 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 35 49 2.9E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_24395 cb68d882e0c6274f41c4c0a587c73695 239 Gene3D G3DSA:1.10.10.10 11 76 5.3E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_24395 cb68d882e0c6274f41c4c0a587c73695 239 SUPERFAMILY SSF48008 81 214 8.89E-24 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_24395 cb68d882e0c6274f41c4c0a587c73695 239 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 75 2.0E-19 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_24395 cb68d882e0c6274f41c4c0a587c73695 239 Pfam PF07729 FCD domain 89 208 1.7E-23 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_07450 3a58dabcf419e377c51c380ff1b6ccc2 282 Pfam PF00149 Calcineurin-like phosphoesterase 3 192 1.2E-13 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AMK58_07450 3a58dabcf419e377c51c380ff1b6ccc2 282 Gene3D G3DSA:3.60.21.10 1 271 7.7E-33 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like AMK58_07450 3a58dabcf419e377c51c380ff1b6ccc2 282 SUPERFAMILY SSF56300 3 243 1.63E-43 T 11-10-2018 AMK58_02135 c3ba4dd7be2f673acbe24dac194a4f93 544 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 276 393 1.2E-9 T 11-10-2018 AMK58_02135 c3ba4dd7be2f673acbe24dac194a4f93 544 Gene3D G3DSA:2.70.160.11 397 542 8.0E-30 T 11-10-2018 AMK58_02135 c3ba4dd7be2f673acbe24dac194a4f93 544 Gene3D G3DSA:1.25.40.10 6 248 1.5E-52 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_02135 c3ba4dd7be2f673acbe24dac194a4f93 544 Gene3D G3DSA:3.40.50.150 249 394 9.3E-45 T 11-10-2018 AMK58_02135 c3ba4dd7be2f673acbe24dac194a4f93 544 SUPERFAMILY SSF48452 14 243 2.15E-36 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_02135 c3ba4dd7be2f673acbe24dac194a4f93 544 Pfam PF13432 Tetratricopeptide repeat 146 205 2.6E-10 T 11-10-2018 AMK58_02135 c3ba4dd7be2f673acbe24dac194a4f93 544 Pfam PF13432 Tetratricopeptide repeat 78 140 2.6E-7 T 11-10-2018 AMK58_02135 c3ba4dd7be2f673acbe24dac194a4f93 544 Pfam PF13432 Tetratricopeptide repeat 11 72 2.8E-6 T 11-10-2018 AMK58_02135 c3ba4dd7be2f673acbe24dac194a4f93 544 SMART SM00028 140 173 7.4E-5 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_02135 c3ba4dd7be2f673acbe24dac194a4f93 544 SMART SM00028 106 139 0.0041 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_02135 c3ba4dd7be2f673acbe24dac194a4f93 544 SMART SM00028 38 71 14.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_02135 c3ba4dd7be2f673acbe24dac194a4f93 544 SMART SM00028 208 241 2.5 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_02135 c3ba4dd7be2f673acbe24dac194a4f93 544 SMART SM00028 72 105 0.24 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_02135 c3ba4dd7be2f673acbe24dac194a4f93 544 SMART SM00028 174 207 4.9 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_02135 c3ba4dd7be2f673acbe24dac194a4f93 544 SUPERFAMILY SSF53335 257 538 6.56E-43 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_26950 d066c92fec21579ab3622e2cf33ef994 284 Gene3D G3DSA:1.10.3720.10 10 283 1.4E-38 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_26950 d066c92fec21579ab3622e2cf33ef994 284 SUPERFAMILY SSF161098 13 282 9.35E-40 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_26950 d066c92fec21579ab3622e2cf33ef994 284 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 55 273 7.9E-10 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_00350 052c86e8a09d998fadc20a38aa37f568 304 Gene3D G3DSA:3.90.1530.30 55 120 5.5E-28 T 11-10-2018 AMK58_00350 052c86e8a09d998fadc20a38aa37f568 304 SUPERFAMILY SSF110849 43 136 8.63E-29 T 11-10-2018 IPR036086 ParB/Sulfiredoxin superfamily AMK58_00350 052c86e8a09d998fadc20a38aa37f568 304 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 40 207 1.2E-61 T 11-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 AMK58_00350 052c86e8a09d998fadc20a38aa37f568 304 SMART SM00470 42 134 8.6E-36 T 11-10-2018 IPR003115 ParB/Sulfiredoxin AMK58_00350 052c86e8a09d998fadc20a38aa37f568 304 Pfam PF02195 ParB-like nuclease domain 43 134 1.2E-26 T 11-10-2018 IPR003115 ParB/Sulfiredoxin AMK58_00350 052c86e8a09d998fadc20a38aa37f568 304 Gene3D G3DSA:1.10.10.2830 121 231 3.1E-40 T 11-10-2018 AMK58_00350 052c86e8a09d998fadc20a38aa37f568 304 SUPERFAMILY SSF109709 126 231 1.36E-33 T 11-10-2018 AMK58_18560 eb5d2e4a456d30c27de1f6e7dff87a3b 236 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 35 230 29.912 T 11-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 AMK58_18560 eb5d2e4a456d30c27de1f6e7dff87a3b 236 Gene3D G3DSA:3.40.50.150 47 235 3.4E-61 T 11-10-2018 AMK58_18560 eb5d2e4a456d30c27de1f6e7dff87a3b 236 SUPERFAMILY SSF53335 50 230 3.08E-37 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_18560 eb5d2e4a456d30c27de1f6e7dff87a3b 236 Pfam PF01728 FtsJ-like methyltransferase 51 229 4.1E-56 T 11-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 AMK58_18560 eb5d2e4a456d30c27de1f6e7dff87a3b 236 PIRSF PIRSF005461 17 236 1.3E-74 T 11-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 AMK58_20555 424037dadef161b1e9cff312aeb034c1 320 SUPERFAMILY SSF53448 17 234 2.91E-39 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_20555 424037dadef161b1e9cff312aeb034c1 320 Gene3D G3DSA:3.90.550.10 3 246 1.1E-34 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_20555 424037dadef161b1e9cff312aeb034c1 320 Pfam PF00535 Glycosyl transferase family 2 19 113 1.1E-27 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMK58_00645 039ca0a245daff62d7e59c891a6ad858 488 SUPERFAMILY SSF53335 227 434 4.94E-36 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_00645 039ca0a245daff62d7e59c891a6ad858 488 Pfam PF01564 Spermine/spermidine synthase domain 281 411 3.1E-6 T 11-10-2018 AMK58_00645 039ca0a245daff62d7e59c891a6ad858 488 Gene3D G3DSA:3.40.50.150 229 473 1.1E-44 T 11-10-2018 AMK58_21870 2052c396817e8b9ca4fbe219d514a9d3 243 Gene3D G3DSA:2.60.120.10 48 164 5.3E-41 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_21870 2052c396817e8b9ca4fbe219d514a9d3 243 Gene3D G3DSA:1.10.10.10 165 243 4.8E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_21870 2052c396817e8b9ca4fbe219d514a9d3 243 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 205 220 1.1E-8 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMK58_21870 2052c396817e8b9ca4fbe219d514a9d3 243 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 189 205 1.1E-8 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMK58_21870 2052c396817e8b9ca4fbe219d514a9d3 243 SUPERFAMILY SSF46785 166 241 3.18E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_21870 2052c396817e8b9ca4fbe219d514a9d3 243 SMART SM00100 33 148 1.2E-17 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_21870 2052c396817e8b9ca4fbe219d514a9d3 243 SMART SM00419 183 232 2.2E-11 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMK58_21870 2052c396817e8b9ca4fbe219d514a9d3 243 Pfam PF00027 Cyclic nucleotide-binding domain 52 135 1.4E-15 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_21870 2052c396817e8b9ca4fbe219d514a9d3 243 Pfam PF13545 Crp-like helix-turn-helix domain 168 239 3.8E-18 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMK58_21870 2052c396817e8b9ca4fbe219d514a9d3 243 SUPERFAMILY SSF51206 35 163 1.96E-29 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like AMK58_00650 c47ba3c9cd5279359033041050e026b4 414 SMART SM00044 186 389 1.0E-6 T 11-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMK58_00650 c47ba3c9cd5279359033041050e026b4 414 Gene3D G3DSA:3.30.70.1230 212 411 1.4E-47 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_00650 c47ba3c9cd5279359033041050e026b4 414 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 224 402 2.7E-20 T 11-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMK58_00650 c47ba3c9cd5279359033041050e026b4 414 SUPERFAMILY SSF55073 216 403 1.18E-46 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_11590 30c3e26e7bc8de3b6c18cc0e352fd891 212 Pfam PF04315 Elongation factor P hydroxylase 91 118 8.4E-5 T 11-10-2018 IPR007411 Elongation factor P hydroxylase AMK58_01425 a2d078eed126fb0375fc404e4f0e2c81 151 Pfam PF03100 CcmE 3 128 5.2E-43 T 11-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 AMK58_01425 a2d078eed126fb0375fc404e4f0e2c81 151 SUPERFAMILY SSF82093 29 134 5.36E-37 T 11-10-2018 IPR036127 CcmE-like superfamily GO:0005886|GO:0017003|GO:0017004 AMK58_01425 a2d078eed126fb0375fc404e4f0e2c81 151 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 1 138 31.407 T 11-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 AMK58_01425 a2d078eed126fb0375fc404e4f0e2c81 151 Gene3D G3DSA:2.40.50.140 29 134 2.5E-36 T 11-10-2018 AMK58_21315 6ad63b091d8e2607f07b5c2977608149 396 Pfam PF06181 Urate oxidase N-terminal 4 294 5.1E-136 T 11-10-2018 IPR010389 Urate oxidase N-terminal AMK58_21315 6ad63b091d8e2607f07b5c2977608149 396 SUPERFAMILY SSF46626 316 394 2.98E-6 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_22060 c28ec39f9e4275664f6febd044e60382 290 Gene3D G3DSA:3.40.50.2300 65 193 1.3E-8 T 11-10-2018 AMK58_22060 c28ec39f9e4275664f6febd044e60382 290 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 245 261 6.0E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_22060 c28ec39f9e4275664f6febd044e60382 290 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 261 273 6.0E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_22060 c28ec39f9e4275664f6febd044e60382 290 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 231 245 6.0E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_22060 c28ec39f9e4275664f6febd044e60382 290 SMART SM00421 228 285 2.7E-19 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_22060 c28ec39f9e4275664f6febd044e60382 290 Gene3D G3DSA:1.10.10.10 221 290 1.0E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_22060 c28ec39f9e4275664f6febd044e60382 290 SUPERFAMILY SSF52172 70 194 8.54E-10 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_22060 c28ec39f9e4275664f6febd044e60382 290 Pfam PF00196 Bacterial regulatory proteins, luxR family 230 283 4.1E-18 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_22060 c28ec39f9e4275664f6febd044e60382 290 SUPERFAMILY SSF46894 222 287 3.4E-18 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMK58_22060 c28ec39f9e4275664f6febd044e60382 290 ProSitePatterns PS00622 LuxR-type HTH domain signature. 245 272 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_20235 2fc5aa3028cc54a0e21c9788748e6d5c 593 SUPERFAMILY SSF116726 214 294 1.18E-16 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 AMK58_20235 2fc5aa3028cc54a0e21c9788748e6d5c 593 Pfam PF00939 Sodium:sulfate symporter transmembrane region 396 590 2.7E-15 T 11-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 AMK58_20235 2fc5aa3028cc54a0e21c9788748e6d5c 593 SUPERFAMILY SSF116726 301 387 5.36E-16 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 AMK58_20235 2fc5aa3028cc54a0e21c9788748e6d5c 593 Pfam PF03600 Citrate transporter 16 192 4.2E-27 T 11-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 AMK58_20235 2fc5aa3028cc54a0e21c9788748e6d5c 593 Pfam PF02080 TrkA-C domain 221 285 2.6E-11 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AMK58_20235 2fc5aa3028cc54a0e21c9788748e6d5c 593 Pfam PF02080 TrkA-C domain 311 380 7.1E-9 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AMK58_20235 2fc5aa3028cc54a0e21c9788748e6d5c 593 Gene3D G3DSA:3.30.70.1450 307 381 1.5E-12 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 AMK58_20235 2fc5aa3028cc54a0e21c9788748e6d5c 593 Gene3D G3DSA:3.30.70.1450 216 292 9.3E-13 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 AMK58_27630 eaef2f12c593a89e91721a57113ebb53 144 SUPERFAMILY SSF52335 3 135 5.49E-46 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily AMK58_27630 eaef2f12c593a89e91721a57113ebb53 144 ProSitePatterns PS01335 Methylglyoxal synthase active site. 58 66 - T 11-10-2018 IPR018148 Methylglyoxal synthase, active site GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 AMK58_27630 eaef2f12c593a89e91721a57113ebb53 144 Pfam PF02142 MGS-like domain 34 110 1.7E-14 T 11-10-2018 IPR011607 Methylglyoxal synthase-like domain AMK58_27630 eaef2f12c593a89e91721a57113ebb53 144 TIGRFAM TIGR00160 MGSA: methylglyoxal synthase 3 136 4.9E-47 T 11-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 AMK58_27630 eaef2f12c593a89e91721a57113ebb53 144 Gene3D G3DSA:3.40.50.1380 1 144 1.1E-54 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily AMK58_27630 eaef2f12c593a89e91721a57113ebb53 144 Hamap MF_00549 Methylglyoxal synthase [mgsA]. 4 124 30.386 T 11-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 AMK58_27630 eaef2f12c593a89e91721a57113ebb53 144 SMART SM00851 17 111 6.6E-13 T 11-10-2018 IPR011607 Methylglyoxal synthase-like domain AMK58_27630 eaef2f12c593a89e91721a57113ebb53 144 PIRSF PIRSF006614 1 143 8.1E-57 T 11-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 AMK58_15535 c2a078cc2617d79516e9afcfbaea77d0 638 Gene3D G3DSA:3.40.50.920 498 630 5.7E-35 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMK58_15535 c2a078cc2617d79516e9afcfbaea77d0 638 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 12 626 5.4E-241 T 11-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AMK58_15535 c2a078cc2617d79516e9afcfbaea77d0 638 SMART SM00861 321 486 1.5E-60 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMK58_15535 c2a078cc2617d79516e9afcfbaea77d0 638 Gene3D G3DSA:3.40.50.970 318 491 2.8E-60 T 11-10-2018 AMK58_15535 c2a078cc2617d79516e9afcfbaea77d0 638 SUPERFAMILY SSF52922 493 629 3.14E-32 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMK58_15535 c2a078cc2617d79516e9afcfbaea77d0 638 SUPERFAMILY SSF52518 7 383 6.59E-80 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMK58_15535 c2a078cc2617d79516e9afcfbaea77d0 638 ProSitePatterns PS00801 Transketolase signature 1. 35 54 - T 11-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AMK58_15535 c2a078cc2617d79516e9afcfbaea77d0 638 SUPERFAMILY SSF52518 318 507 4.45E-56 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMK58_15535 c2a078cc2617d79516e9afcfbaea77d0 638 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 10 284 2.9E-120 T 11-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AMK58_15535 c2a078cc2617d79516e9afcfbaea77d0 638 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 9 630 44.161 T 11-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AMK58_15535 c2a078cc2617d79516e9afcfbaea77d0 638 Pfam PF02780 Transketolase, C-terminal domain 498 621 1.9E-26 T 11-10-2018 IPR033248 Transketolase, C-terminal domain AMK58_15535 c2a078cc2617d79516e9afcfbaea77d0 638 Pfam PF02779 Transketolase, pyrimidine binding domain 321 481 7.4E-36 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMK58_15535 c2a078cc2617d79516e9afcfbaea77d0 638 ProSitePatterns PS00802 Transketolase signature 2. 427 443 - T 11-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AMK58_15630 c48c176f41a77c4259a40a732b48fce8 281 Pfam PF13560 Helix-turn-helix domain 20 80 1.9E-9 T 11-10-2018 AMK58_15630 c48c176f41a77c4259a40a732b48fce8 281 Gene3D G3DSA:1.10.260.40 16 86 1.7E-11 T 11-10-2018 AMK58_15630 c48c176f41a77c4259a40a732b48fce8 281 SUPERFAMILY SSF47413 14 77 4.02E-13 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMK58_15630 c48c176f41a77c4259a40a732b48fce8 281 SMART SM00530 23 78 4.1E-7 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMK58_14210 8248c2ad848aa5bf4bf8dc963a547aa2 564 Gene3D G3DSA:1.20.1480.50 174 274 9.4E-10 T 11-10-2018 AMK58_14210 8248c2ad848aa5bf4bf8dc963a547aa2 564 SMART SM00283 304 558 1.6E-46 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_14210 8248c2ad848aa5bf4bf8dc963a547aa2 564 Gene3D G3DSA:1.10.287.950 275 564 1.0E-51 T 11-10-2018 AMK58_14210 8248c2ad848aa5bf4bf8dc963a547aa2 564 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 431 460 6.6E-20 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_14210 8248c2ad848aa5bf4bf8dc963a547aa2 564 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 6 31 6.6E-20 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_14210 8248c2ad848aa5bf4bf8dc963a547aa2 564 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 402 429 6.6E-20 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_14210 8248c2ad848aa5bf4bf8dc963a547aa2 564 SUPERFAMILY SSF58104 236 557 2.22E-58 T 11-10-2018 AMK58_14210 8248c2ad848aa5bf4bf8dc963a547aa2 564 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 366 544 5.4E-29 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_14210 8248c2ad848aa5bf4bf8dc963a547aa2 564 SMART SM00304 215 268 4.4E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_15145 7f9babb35f37e5df6b47db7a059d5577 495 Pfam PF08666 SAF domain 11 79 1.4E-12 T 11-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 AMK58_15145 7f9babb35f37e5df6b47db7a059d5577 495 SMART SM00858 11 80 2.7E-12 T 11-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 AMK58_15145 7f9babb35f37e5df6b47db7a059d5577 495 Pfam PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus 107 494 1.3E-148 T 11-10-2018 IPR007392 D-galactarate/Altronate dehydratase, C-terminal GO:0016829 AMK58_15145 7f9babb35f37e5df6b47db7a059d5577 495 Gene3D G3DSA:3.90.1210.30 3 83 8.3E-24 T 11-10-2018 AMK58_01100 6cf9bcb4bb390fadd91608454370aa1b 478 Gene3D G3DSA:3.40.50.300 135 316 2.1E-64 T 11-10-2018 AMK58_01100 6cf9bcb4bb390fadd91608454370aa1b 478 Pfam PF00158 Sigma-54 interaction domain 146 312 2.8E-66 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AMK58_01100 6cf9bcb4bb390fadd91608454370aa1b 478 Pfam PF02954 Bacterial regulatory protein, Fis family 432 469 5.4E-11 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMK58_01100 6cf9bcb4bb390fadd91608454370aa1b 478 SUPERFAMILY SSF52540 145 387 5.33E-72 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_01100 6cf9bcb4bb390fadd91608454370aa1b 478 SMART SM00448 6 117 1.6E-30 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_01100 6cf9bcb4bb390fadd91608454370aa1b 478 SUPERFAMILY SSF52172 5 189 8.68E-41 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_01100 6cf9bcb4bb390fadd91608454370aa1b 478 Gene3D G3DSA:3.40.50.2300 4 134 4.9E-32 T 11-10-2018 AMK58_01100 6cf9bcb4bb390fadd91608454370aa1b 478 SUPERFAMILY SSF46689 358 468 1.88E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_01100 6cf9bcb4bb390fadd91608454370aa1b 478 Gene3D G3DSA:1.10.8.60 317 393 4.9E-22 T 11-10-2018 AMK58_01100 6cf9bcb4bb390fadd91608454370aa1b 478 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 231 246 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AMK58_01100 6cf9bcb4bb390fadd91608454370aa1b 478 SMART SM00382 165 308 2.4E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_01100 6cf9bcb4bb390fadd91608454370aa1b 478 Pfam PF00072 Response regulator receiver domain 8 117 1.5E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_01100 6cf9bcb4bb390fadd91608454370aa1b 478 Gene3D G3DSA:1.10.10.60 427 468 1.9E-11 T 11-10-2018 AMK58_07495 ef9c1a7109758e62d74791f6c70e983a 225 Pfam PF14196 L-2-amino-thiazoline-4-carboxylic acid hydrolase 137 219 7.6E-13 T 11-10-2018 IPR026002 L-2-amino-thiazoline-4-carboxylic acid hydrolase AMK58_18410 cd19b8ffda409b67eb714533ee46ddf5 264 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_18410 cd19b8ffda409b67eb714533ee46ddf5 264 SMART SM00382 40 229 1.7E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_18410 cd19b8ffda409b67eb714533ee46ddf5 264 Pfam PF00005 ABC transporter 32 181 4.0E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_18410 cd19b8ffda409b67eb714533ee46ddf5 264 Gene3D G3DSA:3.40.50.300 13 261 1.1E-60 T 11-10-2018 AMK58_18410 cd19b8ffda409b67eb714533ee46ddf5 264 SUPERFAMILY SSF52540 15 250 2.41E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_27570 2681e7b20d7591a08ca23f5549100c69 274 Gene3D G3DSA:1.20.120.530 110 245 8.8E-31 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_27570 2681e7b20d7591a08ca23f5549100c69 274 SUPERFAMILY SSF46785 36 131 2.72E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_27570 2681e7b20d7591a08ca23f5549100c69 274 Pfam PF00392 Bacterial regulatory proteins, gntR family 42 102 3.1E-19 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_27570 2681e7b20d7591a08ca23f5549100c69 274 SMART SM00895 112 236 2.7E-21 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_27570 2681e7b20d7591a08ca23f5549100c69 274 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 76 92 4.6E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_27570 2681e7b20d7591a08ca23f5549100c69 274 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 62 76 4.6E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_27570 2681e7b20d7591a08ca23f5549100c69 274 SMART SM00345 44 102 6.9E-18 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_27570 2681e7b20d7591a08ca23f5549100c69 274 SUPERFAMILY SSF48008 111 240 1.1E-29 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_27570 2681e7b20d7591a08ca23f5549100c69 274 Pfam PF07729 FCD domain 115 234 5.4E-29 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_27570 2681e7b20d7591a08ca23f5549100c69 274 Gene3D G3DSA:1.10.10.10 36 103 6.4E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_26370 fb9bf53c8b2a3fc28468197b9b204372 378 PRINTS PR01010 Flagellar P-ring protein signature 134 152 8.0E-80 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AMK58_26370 fb9bf53c8b2a3fc28468197b9b204372 378 PRINTS PR01010 Flagellar P-ring protein signature 200 218 8.0E-80 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AMK58_26370 fb9bf53c8b2a3fc28468197b9b204372 378 PRINTS PR01010 Flagellar P-ring protein signature 174 192 8.0E-80 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AMK58_26370 fb9bf53c8b2a3fc28468197b9b204372 378 PRINTS PR01010 Flagellar P-ring protein signature 70 85 8.0E-80 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AMK58_26370 fb9bf53c8b2a3fc28468197b9b204372 378 PRINTS PR01010 Flagellar P-ring protein signature 117 134 8.0E-80 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AMK58_26370 fb9bf53c8b2a3fc28468197b9b204372 378 PRINTS PR01010 Flagellar P-ring protein signature 35 50 8.0E-80 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AMK58_26370 fb9bf53c8b2a3fc28468197b9b204372 378 PRINTS PR01010 Flagellar P-ring protein signature 50 65 8.0E-80 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AMK58_26370 fb9bf53c8b2a3fc28468197b9b204372 378 PRINTS PR01010 Flagellar P-ring protein signature 264 276 8.0E-80 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AMK58_26370 fb9bf53c8b2a3fc28468197b9b204372 378 PRINTS PR01010 Flagellar P-ring protein signature 95 114 8.0E-80 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AMK58_26370 fb9bf53c8b2a3fc28468197b9b204372 378 Hamap MF_00416 Flagellar P-ring protein [flgI]. 15 378 35.895 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AMK58_26370 fb9bf53c8b2a3fc28468197b9b204372 378 Pfam PF02119 Flagellar P-ring protein 35 377 1.2E-136 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AMK58_17795 6230b36ae62bdad3136a6a4afef40617 177 PRINTS PR00127 Clp protease catalytic subunit P signature 91 110 1.3E-22 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMK58_17795 6230b36ae62bdad3136a6a4afef40617 177 PRINTS PR00127 Clp protease catalytic subunit P signature 148 167 1.3E-22 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMK58_17795 6230b36ae62bdad3136a6a4afef40617 177 PRINTS PR00127 Clp protease catalytic subunit P signature 70 87 1.3E-22 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMK58_17795 6230b36ae62bdad3136a6a4afef40617 177 PRINTS PR00127 Clp protease catalytic subunit P signature 39 59 1.3E-22 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMK58_17795 6230b36ae62bdad3136a6a4afef40617 177 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 92 105 - T 11-10-2018 IPR033135 ClpP, histidine active site AMK58_17795 6230b36ae62bdad3136a6a4afef40617 177 SUPERFAMILY SSF52096 3 176 3.91E-56 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMK58_17795 6230b36ae62bdad3136a6a4afef40617 177 Pfam PF00574 Clp protease 2 172 2.8E-63 T 11-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA AMK58_17795 6230b36ae62bdad3136a6a4afef40617 177 Gene3D G3DSA:3.90.226.10 1 176 5.6E-59 T 11-10-2018 AMK58_25520 5e061d8f88e09400bbc9db1e3f65a123 80 Pfam PF00550 Phosphopantetheine attachment site 9 71 2.6E-6 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain AMK58_25520 5e061d8f88e09400bbc9db1e3f65a123 80 Gene3D G3DSA:1.10.1200.10 2 80 5.1E-12 T 11-10-2018 IPR036736 ACP-like superfamily AMK58_25520 5e061d8f88e09400bbc9db1e3f65a123 80 SUPERFAMILY SSF47336 3 76 8.51E-10 T 11-10-2018 IPR036736 ACP-like superfamily AMK58_18290 67af98d5ff07b69060d091289e1a24ff 370 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 236 323 2.6E-24 T 11-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 AMK58_18290 67af98d5ff07b69060d091289e1a24ff 370 Gene3D G3DSA:3.40.47.10 2 336 4.7E-111 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_18290 67af98d5ff07b69060d091289e1a24ff 370 SUPERFAMILY SSF53901 17 324 3.9E-47 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_18290 67af98d5ff07b69060d091289e1a24ff 370 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 114 191 2.3E-18 T 11-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 AMK58_21170 2ca2953e4ffad29d999c1f3a1d2e7034 140 Gene3D G3DSA:1.10.760.10 24 140 7.7E-44 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_21170 2ca2953e4ffad29d999c1f3a1d2e7034 140 SUPERFAMILY SSF46626 33 139 1.31E-31 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_21170 2ca2953e4ffad29d999c1f3a1d2e7034 140 Pfam PF09086 Domain of unknown function (DUF1924) 43 137 3.7E-38 T 11-10-2018 IPR015170 Protein of unknown function DUF1924 AMK58_25450 6c8e4461b1dcfbce713ef49decc76121 523 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 466 509 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMK58_25450 6c8e4461b1dcfbce713ef49decc76121 523 Gene3D G3DSA:3.40.50.300 119 286 1.4E-28 T 11-10-2018 AMK58_25450 6c8e4461b1dcfbce713ef49decc76121 523 SUPERFAMILY SSF52540 122 355 1.64E-24 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_25450 6c8e4461b1dcfbce713ef49decc76121 523 SMART SM00342 429 513 1.7E-28 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMK58_25450 6c8e4461b1dcfbce713ef49decc76121 523 Pfam PF14532 Sigma-54 interaction domain 123 287 1.0E-18 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AMK58_25450 6c8e4461b1dcfbce713ef49decc76121 523 Gene3D G3DSA:1.10.8.60 287 360 4.7E-10 T 11-10-2018 AMK58_25450 6c8e4461b1dcfbce713ef49decc76121 523 Gene3D G3DSA:1.10.10.60 414 520 2.6E-27 T 11-10-2018 AMK58_25450 6c8e4461b1dcfbce713ef49decc76121 523 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 482 497 6.3E-7 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMK58_25450 6c8e4461b1dcfbce713ef49decc76121 523 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 497 513 6.3E-7 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMK58_25450 6c8e4461b1dcfbce713ef49decc76121 523 Pfam PF12833 Helix-turn-helix domain 435 515 5.8E-23 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMK58_25450 6c8e4461b1dcfbce713ef49decc76121 523 SUPERFAMILY SSF46689 465 516 1.34E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_12825 fba2d9d81d7a544402e6c51b6bb11abb 187 SUPERFAMILY SSF48403 35 186 2.19E-39 T 11-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily AMK58_12825 fba2d9d81d7a544402e6c51b6bb11abb 187 Gene3D G3DSA:1.25.40.20 21 129 5.2E-30 T 11-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily AMK58_12825 fba2d9d81d7a544402e6c51b6bb11abb 187 Pfam PF12796 Ankyrin repeats (3 copies) 37 124 2.7E-15 T 11-10-2018 IPR020683 Ankyrin repeat-containing domain AMK58_12825 fba2d9d81d7a544402e6c51b6bb11abb 187 Gene3D G3DSA:1.25.40.960 130 187 4.5E-13 T 11-10-2018 AMK58_12825 fba2d9d81d7a544402e6c51b6bb11abb 187 Pfam PF13606 Ankyrin repeat 129 153 5.4E-4 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMK58_12825 fba2d9d81d7a544402e6c51b6bb11abb 187 SMART SM00248 62 91 0.0015 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMK58_12825 fba2d9d81d7a544402e6c51b6bb11abb 187 SMART SM00248 128 157 0.0087 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMK58_12825 fba2d9d81d7a544402e6c51b6bb11abb 187 SMART SM00248 95 124 2.8E-4 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMK58_23625 50f5dc384232de4e5f275cd2d5da6c0e 205 Pfam PF13646 HEAT repeats 25 103 1.3E-11 T 11-10-2018 AMK58_23625 50f5dc384232de4e5f275cd2d5da6c0e 205 Pfam PF13646 HEAT repeats 117 181 1.2E-7 T 11-10-2018 AMK58_23625 50f5dc384232de4e5f275cd2d5da6c0e 205 SUPERFAMILY SSF48371 25 181 3.2E-21 T 11-10-2018 IPR016024 Armadillo-type fold AMK58_23625 50f5dc384232de4e5f275cd2d5da6c0e 205 Gene3D G3DSA:1.25.10.10 22 186 6.6E-22 T 11-10-2018 IPR011989 Armadillo-like helical AMK58_09735 87452a72cf2c381988455e5632e0bef1 518 SUPERFAMILY SSF50156 265 390 3.5E-27 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 AMK58_09735 87452a72cf2c381988455e5632e0bef1 518 SUPERFAMILY SSF50156 425 514 8.81E-10 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 AMK58_09735 87452a72cf2c381988455e5632e0bef1 518 Pfam PF13180 PDZ domain 307 395 6.7E-20 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMK58_09735 87452a72cf2c381988455e5632e0bef1 518 SMART SM00228 307 389 6.8E-17 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMK58_09735 87452a72cf2c381988455e5632e0bef1 518 SMART SM00228 423 506 0.024 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMK58_09735 87452a72cf2c381988455e5632e0bef1 518 PRINTS PR00834 HtrA/DegQ protease family signature 143 155 1.2E-54 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMK58_09735 87452a72cf2c381988455e5632e0bef1 518 PRINTS PR00834 HtrA/DegQ protease family signature 164 184 1.2E-54 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMK58_09735 87452a72cf2c381988455e5632e0bef1 518 PRINTS PR00834 HtrA/DegQ protease family signature 347 359 1.2E-54 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMK58_09735 87452a72cf2c381988455e5632e0bef1 518 PRINTS PR00834 HtrA/DegQ protease family signature 261 278 1.2E-54 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMK58_09735 87452a72cf2c381988455e5632e0bef1 518 PRINTS PR00834 HtrA/DegQ protease family signature 205 229 1.2E-54 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMK58_09735 87452a72cf2c381988455e5632e0bef1 518 PRINTS PR00834 HtrA/DegQ protease family signature 239 256 1.2E-54 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMK58_09735 87452a72cf2c381988455e5632e0bef1 518 SUPERFAMILY SSF50494 53 299 4.8E-65 T 11-10-2018 IPR009003 Peptidase S1, PA clan AMK58_09735 87452a72cf2c381988455e5632e0bef1 518 Gene3D G3DSA:2.30.42.10 302 407 1.8E-31 T 11-10-2018 AMK58_09735 87452a72cf2c381988455e5632e0bef1 518 Gene3D G3DSA:2.40.10.120 54 300 4.7E-83 T 11-10-2018 AMK58_09735 87452a72cf2c381988455e5632e0bef1 518 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 56 511 1.0E-151 T 11-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 AMK58_09735 87452a72cf2c381988455e5632e0bef1 518 Pfam PF13365 Trypsin-like peptidase domain 134 268 1.8E-33 T 11-10-2018 AMK58_09735 87452a72cf2c381988455e5632e0bef1 518 Gene3D G3DSA:2.30.42.60 414 518 1.5E-12 T 11-10-2018 AMK58_17520 8cfd7b3eee3c8ac997e53f406dcf348c 513 Pfam PF00374 Nickel-dependent hydrogenase 191 257 3.9E-10 T 11-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 AMK58_17520 8cfd7b3eee3c8ac997e53f406dcf348c 513 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 444 509 6.6E-6 T 11-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_17520 8cfd7b3eee3c8ac997e53f406dcf348c 513 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 276 426 1.9E-33 T 11-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_17520 8cfd7b3eee3c8ac997e53f406dcf348c 513 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 75 129 1.1E-7 T 11-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_17520 8cfd7b3eee3c8ac997e53f406dcf348c 513 Gene3D G3DSA:1.10.645.20 154 512 4.4E-110 T 11-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_17520 8cfd7b3eee3c8ac997e53f406dcf348c 513 SUPERFAMILY SSF143243 29 167 1.03E-18 T 11-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_17520 8cfd7b3eee3c8ac997e53f406dcf348c 513 SUPERFAMILY SSF56762 163 512 3.53E-102 T 11-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_03845 61370110751ea928d445792890c52a94 245 Gene3D G3DSA:1.10.287.500 148 197 3.7E-5 T 11-10-2018 AMK58_03845 61370110751ea928d445792890c52a94 245 Pfam PF04344 Chemotaxis phosphatase, CheZ 66 243 8.0E-10 T 11-10-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 AMK58_03845 61370110751ea928d445792890c52a94 245 SUPERFAMILY SSF75708 71 245 1.23E-32 T 11-10-2018 AMK58_28785 5e36c20014b8a10e4df59dcafb38c38b 430 Gene3D G3DSA:3.40.50.720 1 197 1.5E-60 T 11-10-2018 AMK58_28785 5e36c20014b8a10e4df59dcafb38c38b 430 SUPERFAMILY SSF52413 300 417 1.44E-22 T 11-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 AMK58_28785 5e36c20014b8a10e4df59dcafb38c38b 430 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 6 411 2.6E-115 T 11-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 AMK58_28785 5e36c20014b8a10e4df59dcafb38c38b 430 SMART SM00984 317 418 1.1E-27 T 11-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AMK58_28785 5e36c20014b8a10e4df59dcafb38c38b 430 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 6 179 9.1E-35 T 11-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AMK58_28785 5e36c20014b8a10e4df59dcafb38c38b 430 SUPERFAMILY SSF48179 200 291 1.31E-24 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMK58_28785 5e36c20014b8a10e4df59dcafb38c38b 430 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 317 418 5.1E-19 T 11-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AMK58_28785 5e36c20014b8a10e4df59dcafb38c38b 430 Gene3D G3DSA:3.40.50.720 200 424 2.3E-52 T 11-10-2018 AMK58_28785 5e36c20014b8a10e4df59dcafb38c38b 430 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 201 289 6.2E-24 T 11-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AMK58_28785 5e36c20014b8a10e4df59dcafb38c38b 430 PIRSF PIRSF500136 1 428 2.5E-143 T 11-10-2018 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 AMK58_28785 5e36c20014b8a10e4df59dcafb38c38b 430 PIRSF PIRSF000124 5 416 3.2E-51 T 11-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 AMK58_28785 5e36c20014b8a10e4df59dcafb38c38b 430 SUPERFAMILY SSF51735 5 191 1.7E-46 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_09435 e50cb549239afb20d2fa4a02a50bfa12 160 Pfam PF00075 RNase H 14 151 2.3E-51 T 11-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 AMK58_09435 e50cb549239afb20d2fa4a02a50bfa12 160 Hamap MF_00042 Ribonuclease H [rnhA]. 12 160 35.924 T 11-10-2018 IPR022892 Ribonuclease HI GO:0004523 AMK58_09435 e50cb549239afb20d2fa4a02a50bfa12 160 Gene3D G3DSA:3.30.420.10 9 158 2.2E-61 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMK58_09435 e50cb549239afb20d2fa4a02a50bfa12 160 SUPERFAMILY SSF53098 13 151 2.02E-59 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMK58_14900 db2d61020aec9bc6166e18e152654c00 373 Hamap MF_00787 Cobalt-precorrin-5B C(1)-methyltransferase [cbiD]. 17 368 28.154 T 11-10-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 AMK58_14900 db2d61020aec9bc6166e18e152654c00 373 Pfam PF01888 CbiD 17 277 5.2E-87 T 11-10-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 AMK58_14900 db2d61020aec9bc6166e18e152654c00 373 Gene3D G3DSA:3.30.2110.10 19 192 3.9E-49 T 11-10-2018 IPR036074 CbiD superfamily GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 AMK58_14900 db2d61020aec9bc6166e18e152654c00 373 SUPERFAMILY SSF111342 12 294 1.7E-82 T 11-10-2018 IPR036074 CbiD superfamily GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 AMK58_14900 db2d61020aec9bc6166e18e152654c00 373 TIGRFAM TIGR00312 cbiD: cobalamin biosynthesis protein CbiD 24 365 1.0E-49 T 11-10-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 AMK58_14900 db2d61020aec9bc6166e18e152654c00 373 PIRSF PIRSF026782 13 372 3.9E-126 T 11-10-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 AMK58_01730 4c98bd81cb88bb7512b0fdf11c3f37cf 1746 Pfam PF00270 DEAD/DEAH box helicase 306 478 1.0E-17 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMK58_01730 4c98bd81cb88bb7512b0fdf11c3f37cf 1746 SUPERFAMILY SSF52540 310 644 1.12E-52 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_01730 4c98bd81cb88bb7512b0fdf11c3f37cf 1746 Pfam PF13245 AAA domain 1114 1302 1.0E-33 T 11-10-2018 AMK58_01730 4c98bd81cb88bb7512b0fdf11c3f37cf 1746 SUPERFAMILY SSF53098 57 144 5.12E-6 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMK58_01730 4c98bd81cb88bb7512b0fdf11c3f37cf 1746 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 286 650 1.8E-86 T 11-10-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 AMK58_01730 4c98bd81cb88bb7512b0fdf11c3f37cf 1746 SUPERFAMILY SSF52540 1105 1594 2.9E-79 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_01730 4c98bd81cb88bb7512b0fdf11c3f37cf 1746 Gene3D G3DSA:3.40.50.300 1103 1322 1.0E-47 T 11-10-2018 AMK58_01730 4c98bd81cb88bb7512b0fdf11c3f37cf 1746 Pfam PF00271 Helicase conserved C-terminal domain 535 628 3.7E-14 T 11-10-2018 IPR001650 Helicase, C-terminal AMK58_01730 4c98bd81cb88bb7512b0fdf11c3f37cf 1746 Gene3D G3DSA:3.40.50.300 502 682 1.0E-42 T 11-10-2018 AMK58_01730 4c98bd81cb88bb7512b0fdf11c3f37cf 1746 Gene3D G3DSA:3.40.50.300 276 491 6.2E-59 T 11-10-2018 AMK58_01730 4c98bd81cb88bb7512b0fdf11c3f37cf 1746 Gene3D G3DSA:3.30.420.10 25 135 1.2E-7 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMK58_01730 4c98bd81cb88bb7512b0fdf11c3f37cf 1746 SMART SM00490 549 630 1.1E-23 T 11-10-2018 IPR001650 Helicase, C-terminal AMK58_01730 4c98bd81cb88bb7512b0fdf11c3f37cf 1746 SMART SM00487 290 510 2.0E-16 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMK58_01730 4c98bd81cb88bb7512b0fdf11c3f37cf 1746 Pfam PF13361 UvrD-like helicase C-terminal domain 1513 1590 3.6E-13 T 11-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AMK58_05805 0cd394aa458c99bd0d6383ee09bc2964 339 SUPERFAMILY SSF55257 14 237 7.65E-29 T 11-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMK58_05805 0cd394aa458c99bd0d6383ee09bc2964 339 SMART SM00662 27 234 1.0E-89 T 11-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMK58_05805 0cd394aa458c99bd0d6383ee09bc2964 339 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 7 319 36.221 T 11-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMK58_05805 0cd394aa458c99bd0d6383ee09bc2964 339 Gene3D G3DSA:1.10.150.20 246 331 1.0E-37 T 11-10-2018 AMK58_05805 0cd394aa458c99bd0d6383ee09bc2964 339 SUPERFAMILY SSF56553 57 178 2.35E-41 T 11-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMK58_05805 0cd394aa458c99bd0d6383ee09bc2964 339 Gene3D G3DSA:3.30.1360.10 25 228 4.2E-82 T 11-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMK58_05805 0cd394aa458c99bd0d6383ee09bc2964 339 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 33 228 3.3E-22 T 11-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMK58_05805 0cd394aa458c99bd0d6383ee09bc2964 339 SUPERFAMILY SSF47789 252 328 1.44E-27 T 11-10-2018 AMK58_05805 0cd394aa458c99bd0d6383ee09bc2964 339 Gene3D G3DSA:2.170.120.12 57 177 4.2E-82 T 11-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMK58_05805 0cd394aa458c99bd0d6383ee09bc2964 339 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 28 319 1.2E-114 T 11-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMK58_05805 0cd394aa458c99bd0d6383ee09bc2964 339 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 67 159 6.1E-22 T 11-10-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMK58_05805 0cd394aa458c99bd0d6383ee09bc2964 339 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 259 318 2.0E-27 T 11-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMK58_05805 0cd394aa458c99bd0d6383ee09bc2964 339 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 251 310 9.0E-26 T 11-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMK58_21070 6f63c65bc291924a8431b20b6a856cf9 243 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 217 238 3.1E-6 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AMK58_21070 6f63c65bc291924a8431b20b6a856cf9 243 SMART SM00382 31 218 9.7E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_21070 6f63c65bc291924a8431b20b6a856cf9 243 Pfam PF00005 ABC transporter 23 167 2.0E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_21070 6f63c65bc291924a8431b20b6a856cf9 243 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 7 243 3.3E-113 T 11-10-2018 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 AMK58_21070 6f63c65bc291924a8431b20b6a856cf9 243 Gene3D G3DSA:3.40.50.300 7 243 1.8E-66 T 11-10-2018 AMK58_21070 6f63c65bc291924a8431b20b6a856cf9 243 SUPERFAMILY SSF52540 11 238 1.66E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_21070 6f63c65bc291924a8431b20b6a856cf9 243 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_21040 2837c50a4026e7d0a286d708d6b66a4c 373 SUPERFAMILY SSF51412 24 339 1.13E-46 T 11-10-2018 AMK58_21040 2837c50a4026e7d0a286d708d6b66a4c 373 Gene3D G3DSA:3.20.20.70 20 349 3.8E-82 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_21040 2837c50a4026e7d0a286d708d6b66a4c 373 Pfam PF03060 Nitronate monooxygenase 24 332 7.4E-47 T 11-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 AMK58_19380 dbd697fdfe59aad9da44c5c6b8710d71 360 ProSitePatterns PS01155 Endonuclease III family signature. 115 142 - T 11-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 AMK58_19380 dbd697fdfe59aad9da44c5c6b8710d71 360 Pfam PF14815 NUDIX domain 246 354 1.5E-21 T 11-10-2018 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 AMK58_19380 dbd697fdfe59aad9da44c5c6b8710d71 360 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 49 166 3.2E-16 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AMK58_19380 dbd697fdfe59aad9da44c5c6b8710d71 360 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 203 219 - T 11-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 AMK58_19380 dbd697fdfe59aad9da44c5c6b8710d71 360 SMART SM00478 52 201 2.6E-41 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AMK58_19380 dbd697fdfe59aad9da44c5c6b8710d71 360 SUPERFAMILY SSF55811 231 356 4.47E-22 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMK58_19380 dbd697fdfe59aad9da44c5c6b8710d71 360 Gene3D G3DSA:1.10.340.30 30 145 8.2E-83 T 11-10-2018 AMK58_19380 dbd697fdfe59aad9da44c5c6b8710d71 360 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 203 219 1.2E-6 T 11-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 AMK58_19380 dbd697fdfe59aad9da44c5c6b8710d71 360 SMART SM00525 202 222 3.2E-4 T 11-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 AMK58_19380 dbd697fdfe59aad9da44c5c6b8710d71 360 Gene3D G3DSA:3.90.79.10 243 358 1.2E-13 T 11-10-2018 AMK58_19380 dbd697fdfe59aad9da44c5c6b8710d71 360 Gene3D G3DSA:1.10.1670.10 19 223 8.2E-83 T 11-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 AMK58_19380 dbd697fdfe59aad9da44c5c6b8710d71 360 SUPERFAMILY SSF48150 18 233 8.48E-70 T 11-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 AMK58_19380 dbd697fdfe59aad9da44c5c6b8710d71 360 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 19 275 1.3E-91 T 11-10-2018 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 AMK58_13775 0aff276b1c5394443c455c43aaff73e0 563 Gene3D G3DSA:3.30.450.20 36 184 1.3E-35 T 11-10-2018 AMK58_13775 0aff276b1c5394443c455c43aaff73e0 563 SMART SM01049 35 129 3.3E-20 T 11-10-2018 IPR033480 Single Cache domain 2 AMK58_13775 0aff276b1c5394443c455c43aaff73e0 563 SMART SM00304 213 266 2.8E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_13775 0aff276b1c5394443c455c43aaff73e0 563 SUPERFAMILY SSF58104 234 556 1.01E-61 T 11-10-2018 AMK58_13775 0aff276b1c5394443c455c43aaff73e0 563 Pfam PF17200 Single Cache domain 2 40 189 8.5E-33 T 11-10-2018 IPR033480 Single Cache domain 2 AMK58_13775 0aff276b1c5394443c455c43aaff73e0 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 430 459 2.5E-21 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_13775 0aff276b1c5394443c455c43aaff73e0 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 8 33 2.5E-21 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_13775 0aff276b1c5394443c455c43aaff73e0 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 478 507 2.5E-21 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_13775 0aff276b1c5394443c455c43aaff73e0 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 401 428 2.5E-21 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_13775 0aff276b1c5394443c455c43aaff73e0 563 Pfam PF00672 HAMP domain 216 262 9.1E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_13775 0aff276b1c5394443c455c43aaff73e0 563 SMART SM00283 303 550 5.8E-50 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_13775 0aff276b1c5394443c455c43aaff73e0 563 Gene3D G3DSA:1.10.287.950 279 561 1.5E-52 T 11-10-2018 AMK58_13775 0aff276b1c5394443c455c43aaff73e0 563 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 381 527 1.1E-31 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_13775 0aff276b1c5394443c455c43aaff73e0 563 Gene3D G3DSA:1.20.1480.50 185 272 9.8E-12 T 11-10-2018 AMK58_08375 5478e3751c7ced6d441dd0f6e108c58d 525 Pfam PF04675 DNA ligase N terminus 17 158 1.9E-6 T 11-10-2018 IPR012308 DNA ligase, ATP-dependent, N-terminal GO:0003677|GO:0003910|GO:0006281|GO:0006310 AMK58_08375 5478e3751c7ced6d441dd0f6e108c58d 525 TIGRFAM TIGR04120 DNA_lig_bact: DNA ligase, ATP-dependent, PP_1105 family 3 523 2.6E-245 T 11-10-2018 IPR026333 ATP-dependent DNA ligase, PP_1105 family AMK58_08375 5478e3751c7ced6d441dd0f6e108c58d 525 SUPERFAMILY SSF56091 203 398 1.38E-51 T 11-10-2018 AMK58_08375 5478e3751c7ced6d441dd0f6e108c58d 525 Gene3D G3DSA:3.30.470.30 202 398 3.7E-43 T 11-10-2018 AMK58_08375 5478e3751c7ced6d441dd0f6e108c58d 525 ProSitePatterns PS00697 ATP-dependent DNA ligase AMP-binding site. 226 234 - T 11-10-2018 IPR016059 DNA ligase, ATP-dependent, conserved site GO:0003909|GO:0051103 AMK58_08375 5478e3751c7ced6d441dd0f6e108c58d 525 SUPERFAMILY SSF50249 403 522 3.6E-32 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_08375 5478e3751c7ced6d441dd0f6e108c58d 525 Pfam PF04679 ATP dependent DNA ligase C terminal region 419 508 2.3E-13 T 11-10-2018 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 AMK58_08375 5478e3751c7ced6d441dd0f6e108c58d 525 Pfam PF01068 ATP dependent DNA ligase domain 205 398 1.9E-28 T 11-10-2018 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 AMK58_08375 5478e3751c7ced6d441dd0f6e108c58d 525 Gene3D G3DSA:2.40.50.140 402 524 1.3E-30 T 11-10-2018 AMK58_02710 c434f45e4d2b55ec4f240fbabc077d47 210 SUPERFAMILY SSF47413 5 76 5.2E-5 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMK58_02710 c434f45e4d2b55ec4f240fbabc077d47 210 Gene3D G3DSA:2.10.109.10 82 208 4.6E-17 T 11-10-2018 AMK58_02710 c434f45e4d2b55ec4f240fbabc077d47 210 Pfam PF00717 Peptidase S24-like 128 195 3.5E-15 T 11-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AMK58_02710 c434f45e4d2b55ec4f240fbabc077d47 210 SUPERFAMILY SSF51306 85 207 3.53E-23 T 11-10-2018 IPR036286 LexA/Signal peptidase-like superfamily AMK58_02585 0b9f3b608ab6803583b48af09618cb1d 409 SUPERFAMILY SSF48371 73 182 1.34E-5 T 11-10-2018 IPR016024 Armadillo-type fold AMK58_02585 0b9f3b608ab6803583b48af09618cb1d 409 Pfam PF10098 Uncharacterised protein conserved in bacteria (DUF2336) 148 402 6.1E-54 T 11-10-2018 IPR019285 Protein of unknown function DUF2336 AMK58_09800 830668d2f020180e96604b6c5de1a5ed 1130 Gene3D G3DSA:1.20.120.850 899 1111 1.3E-75 T 11-10-2018 AMK58_09800 830668d2f020180e96604b6c5de1a5ed 1130 SUPERFAMILY SSF52540 630 877 6.9E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_09800 830668d2f020180e96604b6c5de1a5ed 1130 Gene3D G3DSA:3.40.50.10810 667 878 2.1E-69 T 11-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily AMK58_09800 830668d2f020180e96604b6c5de1a5ed 1130 SUPERFAMILY SSF52540 878 1114 9.17E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_09800 830668d2f020180e96604b6c5de1a5ed 1130 SMART SM00490 992 1072 2.6E-19 T 11-10-2018 IPR001650 Helicase, C-terminal AMK58_09800 830668d2f020180e96604b6c5de1a5ed 1130 Gene3D G3DSA:3.40.50.300 884 1086 1.3E-75 T 11-10-2018 AMK58_09800 830668d2f020180e96604b6c5de1a5ed 1130 Pfam PF00176 SNF2 family N-terminal domain 682 950 3.8E-64 T 11-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 AMK58_09800 830668d2f020180e96604b6c5de1a5ed 1130 SMART SM00487 662 846 2.7E-36 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMK58_09800 830668d2f020180e96604b6c5de1a5ed 1130 Pfam PF00271 Helicase conserved C-terminal domain 963 1072 3.9E-16 T 11-10-2018 IPR001650 Helicase, C-terminal AMK58_17650 7eef8ca00aab4e263b68337511e3b4ff 465 SMART SM00861 142 317 1.7E-57 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMK58_17650 7eef8ca00aab4e263b68337511e3b4ff 465 Gene3D G3DSA:3.40.50.970 141 328 1.8E-83 T 11-10-2018 AMK58_17650 7eef8ca00aab4e263b68337511e3b4ff 465 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 11-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 AMK58_17650 7eef8ca00aab4e263b68337511e3b4ff 465 Pfam PF02780 Transketolase, C-terminal domain 332 454 4.1E-45 T 11-10-2018 IPR033248 Transketolase, C-terminal domain AMK58_17650 7eef8ca00aab4e263b68337511e3b4ff 465 Gene3D G3DSA:3.40.50.920 329 462 4.8E-52 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMK58_17650 7eef8ca00aab4e263b68337511e3b4ff 465 Pfam PF02779 Transketolase, pyrimidine binding domain 142 316 3.2E-47 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMK58_17650 7eef8ca00aab4e263b68337511e3b4ff 465 Pfam PF00364 Biotin-requiring enzyme 4 77 6.4E-20 T 11-10-2018 IPR000089 Biotin/lipoyl attachment AMK58_17650 7eef8ca00aab4e263b68337511e3b4ff 465 SUPERFAMILY SSF52922 326 461 9.68E-46 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMK58_17650 7eef8ca00aab4e263b68337511e3b4ff 465 SUPERFAMILY SSF51230 1 88 6.81E-28 T 11-10-2018 IPR011053 Single hybrid motif AMK58_17650 7eef8ca00aab4e263b68337511e3b4ff 465 Gene3D G3DSA:2.40.50.100 2 97 2.8E-32 T 11-10-2018 AMK58_17650 7eef8ca00aab4e263b68337511e3b4ff 465 SUPERFAMILY SSF52518 142 331 2.9E-66 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMK58_08745 8fc73d58d8c6105bd15888dccff67f37 432 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 426 6.5E-158 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 AMK58_08745 8fc73d58d8c6105bd15888dccff67f37 432 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 419 7.2E-132 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit AMK58_08745 8fc73d58d8c6105bd15888dccff67f37 432 PIRSF PIRSF006066 1 432 8.8E-152 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 AMK58_19265 f67fa5b949ec31e30ead9ad890ea621a 159 PRINTS PR00446 Hydrogen uptake protein signature 56 66 2.9E-21 T 11-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 AMK58_19265 f67fa5b949ec31e30ead9ad890ea621a 159 PRINTS PR00446 Hydrogen uptake protein signature 3 15 2.9E-21 T 11-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 AMK58_19265 f67fa5b949ec31e30ead9ad890ea621a 159 PRINTS PR00446 Hydrogen uptake protein signature 15 26 2.9E-21 T 11-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 AMK58_19265 f67fa5b949ec31e30ead9ad890ea621a 159 PRINTS PR00446 Hydrogen uptake protein signature 35 52 2.9E-21 T 11-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 AMK58_19265 f67fa5b949ec31e30ead9ad890ea621a 159 PRINTS PR00446 Hydrogen uptake protein signature 67 83 2.9E-21 T 11-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 AMK58_19265 f67fa5b949ec31e30ead9ad890ea621a 159 SUPERFAMILY SSF53163 1 158 3.4E-42 T 11-10-2018 IPR023430 Peptidase HybD-like domain superfamily AMK58_19265 f67fa5b949ec31e30ead9ad890ea621a 159 Gene3D G3DSA:3.40.50.1450 1 159 2.6E-42 T 11-10-2018 IPR023430 Peptidase HybD-like domain superfamily AMK58_19265 f67fa5b949ec31e30ead9ad890ea621a 159 Pfam PF01750 Hydrogenase maturation protease 20 147 1.8E-26 T 11-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 AMK58_19265 f67fa5b949ec31e30ead9ad890ea621a 159 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 4 148 1.7E-42 T 11-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 AMK58_24960 ccdbbb064c49f050939f9fcb367ca0e9 310 Gene3D G3DSA:3.40.190.10 105 290 2.7E-54 T 11-10-2018 AMK58_24960 ccdbbb064c49f050939f9fcb367ca0e9 310 SUPERFAMILY SSF46785 7 87 1.6E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_24960 ccdbbb064c49f050939f9fcb367ca0e9 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 27 38 2.3E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_24960 ccdbbb064c49f050939f9fcb367ca0e9 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 38 48 2.3E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_24960 ccdbbb064c49f050939f9fcb367ca0e9 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 48 59 2.3E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_24960 ccdbbb064c49f050939f9fcb367ca0e9 310 Gene3D G3DSA:1.10.10.10 11 100 1.5E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_24960 ccdbbb064c49f050939f9fcb367ca0e9 310 Gene3D G3DSA:3.40.190.10 166 264 2.7E-54 T 11-10-2018 AMK58_24960 ccdbbb064c49f050939f9fcb367ca0e9 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 71 1.1E-21 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_24960 ccdbbb064c49f050939f9fcb367ca0e9 310 SUPERFAMILY SSF53850 97 298 4.03E-36 T 11-10-2018 AMK58_24960 ccdbbb064c49f050939f9fcb367ca0e9 310 Pfam PF03466 LysR substrate binding domain 95 294 1.0E-37 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_26345 d3e81fd0d6cd2be11fa1d1fc6abdc020 794 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 371 532 7.8E-38 T 11-10-2018 IPR000160 GGDEF domain AMK58_26345 d3e81fd0d6cd2be11fa1d1fc6abdc020 794 Gene3D G3DSA:3.30.70.270 368 546 7.5E-59 T 11-10-2018 AMK58_26345 d3e81fd0d6cd2be11fa1d1fc6abdc020 794 SMART SM00267 363 534 2.3E-60 T 11-10-2018 IPR000160 GGDEF domain AMK58_26345 d3e81fd0d6cd2be11fa1d1fc6abdc020 794 SUPERFAMILY SSF55073 379 535 6.67E-49 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_26345 d3e81fd0d6cd2be11fa1d1fc6abdc020 794 Pfam PF03707 Bacterial signalling protein N terminal repeat 119 171 7.7E-10 T 11-10-2018 IPR005330 MHYT domain AMK58_26345 d3e81fd0d6cd2be11fa1d1fc6abdc020 794 Pfam PF03707 Bacterial signalling protein N terminal repeat 182 243 3.6E-6 T 11-10-2018 IPR005330 MHYT domain AMK58_26345 d3e81fd0d6cd2be11fa1d1fc6abdc020 794 Pfam PF03707 Bacterial signalling protein N terminal repeat 58 105 3.7E-12 T 11-10-2018 IPR005330 MHYT domain AMK58_26345 d3e81fd0d6cd2be11fa1d1fc6abdc020 794 Pfam PF00563 EAL domain 550 781 6.5E-72 T 11-10-2018 IPR001633 EAL domain AMK58_26345 d3e81fd0d6cd2be11fa1d1fc6abdc020 794 SUPERFAMILY SSF55785 249 360 1.61E-16 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_26345 d3e81fd0d6cd2be11fa1d1fc6abdc020 794 Gene3D G3DSA:3.20.20.450 547 793 7.3E-98 T 11-10-2018 IPR035919 EAL domain superfamily AMK58_26345 d3e81fd0d6cd2be11fa1d1fc6abdc020 794 SUPERFAMILY SSF141868 549 792 1.16E-89 T 11-10-2018 IPR035919 EAL domain superfamily AMK58_26345 d3e81fd0d6cd2be11fa1d1fc6abdc020 794 SMART SM00091 256 321 9.4E-8 T 11-10-2018 IPR000014 PAS domain AMK58_26345 d3e81fd0d6cd2be11fa1d1fc6abdc020 794 Gene3D G3DSA:3.30.450.20 242 360 4.3E-19 T 11-10-2018 AMK58_26345 d3e81fd0d6cd2be11fa1d1fc6abdc020 794 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 252 369 1.1E-17 T 11-10-2018 IPR000014 PAS domain AMK58_26345 d3e81fd0d6cd2be11fa1d1fc6abdc020 794 Pfam PF00990 Diguanylate cyclase, GGDEF domain 374 529 1.5E-43 T 11-10-2018 IPR000160 GGDEF domain AMK58_26345 d3e81fd0d6cd2be11fa1d1fc6abdc020 794 Pfam PF13426 PAS domain 267 362 5.7E-10 T 11-10-2018 IPR000014 PAS domain AMK58_26345 d3e81fd0d6cd2be11fa1d1fc6abdc020 794 SMART SM00052 544 786 2.8E-114 T 11-10-2018 IPR001633 EAL domain AMK58_26300 dc85ffff11e45796436f9212c1123e7e 141 SMART SM00091 8 74 3.0E-9 T 11-10-2018 IPR000014 PAS domain AMK58_26300 dc85ffff11e45796436f9212c1123e7e 141 SMART SM00086 85 127 0.0085 T 11-10-2018 IPR001610 PAC motif AMK58_26300 dc85ffff11e45796436f9212c1123e7e 141 Gene3D G3DSA:3.30.450.20 8 140 2.9E-27 T 11-10-2018 AMK58_26300 dc85ffff11e45796436f9212c1123e7e 141 Pfam PF08448 PAS fold 19 127 2.8E-16 T 11-10-2018 IPR013656 PAS fold-4 AMK58_26300 dc85ffff11e45796436f9212c1123e7e 141 SUPERFAMILY SSF55785 19 136 1.01E-25 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_26300 dc85ffff11e45796436f9212c1123e7e 141 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 12 130 3.1E-20 T 11-10-2018 IPR000014 PAS domain AMK58_11975 8329cdfc0af48052b2c0004606f00854 340 SUPERFAMILY SSF48029 122 329 1.57E-61 T 11-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical AMK58_11975 8329cdfc0af48052b2c0004606f00854 340 Pfam PF14841 FliG middle domain 122 194 5.5E-24 T 11-10-2018 IPR032779 Flagellar motor switch protein FliG, middle domain AMK58_11975 8329cdfc0af48052b2c0004606f00854 340 Gene3D G3DSA:1.10.220.30 201 339 1.9E-42 T 11-10-2018 AMK58_11975 8329cdfc0af48052b2c0004606f00854 340 Gene3D G3DSA:1.10.220.30 93 198 1.5E-25 T 11-10-2018 AMK58_11975 8329cdfc0af48052b2c0004606f00854 340 Gene3D G3DSA:1.10.220.30 5 88 9.4E-18 T 11-10-2018 AMK58_11975 8329cdfc0af48052b2c0004606f00854 340 PIRSF PIRSF003161 6 339 3.2E-111 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AMK58_11975 8329cdfc0af48052b2c0004606f00854 340 Pfam PF01706 FliG C-terminal domain 223 329 2.9E-39 T 11-10-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal AMK58_11975 8329cdfc0af48052b2c0004606f00854 340 SUPERFAMILY SSF48029 8 121 2.22E-21 T 11-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical AMK58_11975 8329cdfc0af48052b2c0004606f00854 340 Pfam PF14842 FliG N-terminal domain 12 113 5.7E-27 T 11-10-2018 IPR028263 Flagellar motor switch protein FliG, N-terminal domain AMK58_11975 8329cdfc0af48052b2c0004606f00854 340 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 7 336 9.5E-79 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AMK58_11975 8329cdfc0af48052b2c0004606f00854 340 PRINTS PR00954 Flagellar motor switch protein FliG signature 41 67 3.2E-61 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AMK58_11975 8329cdfc0af48052b2c0004606f00854 340 PRINTS PR00954 Flagellar motor switch protein FliG signature 12 28 3.2E-61 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AMK58_11975 8329cdfc0af48052b2c0004606f00854 340 PRINTS PR00954 Flagellar motor switch protein FliG signature 200 225 3.2E-61 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AMK58_11975 8329cdfc0af48052b2c0004606f00854 340 PRINTS PR00954 Flagellar motor switch protein FliG signature 120 143 3.2E-61 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AMK58_11975 8329cdfc0af48052b2c0004606f00854 340 PRINTS PR00954 Flagellar motor switch protein FliG signature 277 303 3.2E-61 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AMK58_11975 8329cdfc0af48052b2c0004606f00854 340 PRINTS PR00954 Flagellar motor switch protein FliG signature 253 273 3.2E-61 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AMK58_11975 8329cdfc0af48052b2c0004606f00854 340 PRINTS PR00954 Flagellar motor switch protein FliG signature 231 251 3.2E-61 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AMK58_23845 049682c4a193b7a48ee94ea4847e95ca 98 Pfam PF06945 Protein of unknown function (DUF1289) 8 53 9.4E-16 T 11-10-2018 IPR010710 Protein of unknown function DUF1289 AMK58_15820 42a864ed866709333325e8875ac3b29e 114 SMART SM00530 40 96 0.0022 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMK58_15820 42a864ed866709333325e8875ac3b29e 114 Gene3D G3DSA:1.10.260.40 14 99 4.3E-24 T 11-10-2018 AMK58_15820 42a864ed866709333325e8875ac3b29e 114 SUPERFAMILY SSF47413 27 109 1.86E-21 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMK58_15820 42a864ed866709333325e8875ac3b29e 114 Pfam PF13744 Helix-turn-helix domain 19 98 9.3E-27 T 11-10-2018 IPR039554 HigA2-like, helix-turn-helix domain AMK58_11720 147044e51d21103edb6b1b562f2f6a76 470 SMART SM00228 99 170 2.3E-15 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMK58_11720 147044e51d21103edb6b1b562f2f6a76 470 Gene3D G3DSA:3.90.226.10 187 360 1.8E-102 T 11-10-2018 AMK58_11720 147044e51d21103edb6b1b562f2f6a76 470 SUPERFAMILY SSF50156 87 182 8.39E-21 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 AMK58_11720 147044e51d21103edb6b1b562f2f6a76 470 Gene3D G3DSA:2.30.42.10 99 186 1.8E-102 T 11-10-2018 AMK58_11720 147044e51d21103edb6b1b562f2f6a76 470 Gene3D G3DSA:3.30.750.44 35 338 1.8E-102 T 11-10-2018 AMK58_11720 147044e51d21103edb6b1b562f2f6a76 470 Pfam PF03572 Peptidase family S41 196 362 2.1E-58 T 11-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 AMK58_11720 147044e51d21103edb6b1b562f2f6a76 470 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 51 368 6.8E-105 T 11-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 AMK58_11720 147044e51d21103edb6b1b562f2f6a76 470 SUPERFAMILY SSF52096 27 367 6.3E-87 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMK58_11720 147044e51d21103edb6b1b562f2f6a76 470 SMART SM00245 172 363 1.8E-79 T 11-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 AMK58_11720 147044e51d21103edb6b1b562f2f6a76 470 Pfam PF13180 PDZ domain 99 179 3.3E-12 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMK58_10985 dc2d809d4194bf1017ef07c8ddc37916 547 Pfam PF00342 Phosphoglucose isomerase 49 540 7.8E-240 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_10985 dc2d809d4194bf1017ef07c8ddc37916 547 SUPERFAMILY SSF53697 4 546 4.73E-232 T 11-10-2018 AMK58_10985 dc2d809d4194bf1017ef07c8ddc37916 547 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 263 276 - T 11-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_10985 dc2d809d4194bf1017ef07c8ddc37916 547 PRINTS PR00662 Glucose-6-phosphate isomerase signature 495 508 3.6E-58 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_10985 dc2d809d4194bf1017ef07c8ddc37916 547 PRINTS PR00662 Glucose-6-phosphate isomerase signature 463 481 3.6E-58 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_10985 dc2d809d4194bf1017ef07c8ddc37916 547 PRINTS PR00662 Glucose-6-phosphate isomerase signature 147 166 3.6E-58 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_10985 dc2d809d4194bf1017ef07c8ddc37916 547 PRINTS PR00662 Glucose-6-phosphate isomerase signature 336 357 3.6E-58 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_10985 dc2d809d4194bf1017ef07c8ddc37916 547 PRINTS PR00662 Glucose-6-phosphate isomerase signature 481 495 3.6E-58 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_10985 dc2d809d4194bf1017ef07c8ddc37916 547 PRINTS PR00662 Glucose-6-phosphate isomerase signature 259 277 3.6E-58 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_10985 dc2d809d4194bf1017ef07c8ddc37916 547 Gene3D G3DSA:3.40.50.10490 10 504 6.6E-240 T 11-10-2018 AMK58_10985 dc2d809d4194bf1017ef07c8ddc37916 547 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 495 512 - T 11-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_10985 dc2d809d4194bf1017ef07c8ddc37916 547 Gene3D G3DSA:3.40.50.10490 95 289 6.6E-240 T 11-10-2018 AMK58_10985 dc2d809d4194bf1017ef07c8ddc37916 547 Gene3D G3DSA:1.10.1390.10 505 547 1.6E-19 T 11-10-2018 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_10985 dc2d809d4194bf1017ef07c8ddc37916 547 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 43 522 42.628 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_14430 e8f66e2a9979343cdf9c3b13abd7dc17 307 Gene3D G3DSA:3.40.190.10 196 272 1.6E-7 T 11-10-2018 AMK58_14430 e8f66e2a9979343cdf9c3b13abd7dc17 307 Gene3D G3DSA:3.40.190.10 273 293 1.6E-7 T 11-10-2018 AMK58_14430 e8f66e2a9979343cdf9c3b13abd7dc17 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 3.4E-20 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_14430 e8f66e2a9979343cdf9c3b13abd7dc17 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 8.3E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_14430 e8f66e2a9979343cdf9c3b13abd7dc17 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 8.3E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_14430 e8f66e2a9979343cdf9c3b13abd7dc17 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 8.3E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_14430 e8f66e2a9979343cdf9c3b13abd7dc17 307 Pfam PF03466 LysR substrate binding domain 90 299 8.5E-22 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_14430 e8f66e2a9979343cdf9c3b13abd7dc17 307 SUPERFAMILY SSF46785 1 80 1.14E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_14430 e8f66e2a9979343cdf9c3b13abd7dc17 307 SUPERFAMILY SSF53850 92 303 1.99E-21 T 11-10-2018 AMK58_14430 e8f66e2a9979343cdf9c3b13abd7dc17 307 Gene3D G3DSA:1.10.10.10 1 86 5.0E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_06835 a199c2d9c5049de5e0f32ed61ba6901e 623 Pfam PF12532 Protein of unknown function (DUF3732) 443 616 5.6E-52 T 11-10-2018 IPR022205 Protein of unknown function DUF3732 AMK58_06835 a199c2d9c5049de5e0f32ed61ba6901e 623 Gene3D G3DSA:3.40.50.300 1 227 3.5E-6 T 11-10-2018 AMK58_03055 bf4f43bcc68527b6e7f5f49719c0a819 413 Pfam PF00534 Glycosyl transferases group 1 215 379 1.4E-31 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 AMK58_03055 bf4f43bcc68527b6e7f5f49719c0a819 413 Pfam PF13439 Glycosyltransferase Family 4 44 197 6.0E-28 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AMK58_03055 bf4f43bcc68527b6e7f5f49719c0a819 413 Gene3D G3DSA:3.40.50.2000 56 399 9.3E-67 T 11-10-2018 AMK58_03055 bf4f43bcc68527b6e7f5f49719c0a819 413 Gene3D G3DSA:3.40.50.2000 195 386 9.3E-67 T 11-10-2018 AMK58_03055 bf4f43bcc68527b6e7f5f49719c0a819 413 SUPERFAMILY SSF53756 33 405 9.03E-84 T 11-10-2018 AMK58_12380 7777545b930ada3ba0391c7b9fa5cc51 196 SUPERFAMILY SSF47240 31 84 8.12E-8 T 11-10-2018 IPR009078 Ferritin-like superfamily AMK58_12380 7777545b930ada3ba0391c7b9fa5cc51 196 Pfam PF03232 Ubiquinone biosynthesis protein COQ7 34 194 1.0E-27 T 11-10-2018 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 Reactome: R-HSA-2142789 AMK58_02145 d1338e400b080e9b5031d710e3be35a3 555 Gene3D G3DSA:3.30.450.40 170 316 5.1E-6 T 11-10-2018 IPR029016 GAF-like domain superfamily AMK58_02145 d1338e400b080e9b5031d710e3be35a3 555 Pfam PF11849 Domain of unknown function (DUF3369) 150 315 4.2E-29 T 11-10-2018 IPR021800 Domain of unknown function DUF3369 AMK58_02145 d1338e400b080e9b5031d710e3be35a3 555 Pfam PF13487 HD domain 396 465 4.4E-14 T 11-10-2018 AMK58_02145 d1338e400b080e9b5031d710e3be35a3 555 SUPERFAMILY SSF109604 328 513 5.76E-30 T 11-10-2018 AMK58_02145 d1338e400b080e9b5031d710e3be35a3 555 SUPERFAMILY SSF52172 20 155 7.91E-8 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_02145 d1338e400b080e9b5031d710e3be35a3 555 Gene3D G3DSA:3.40.50.2300 10 167 5.1E-7 T 11-10-2018 AMK58_02145 d1338e400b080e9b5031d710e3be35a3 555 SMART SM00471 333 483 1.2E-5 T 11-10-2018 IPR003607 HD/PDEase domain AMK58_02145 d1338e400b080e9b5031d710e3be35a3 555 Gene3D G3DSA:1.10.3210.10 317 522 9.1E-64 T 11-10-2018 AMK58_02145 d1338e400b080e9b5031d710e3be35a3 555 SUPERFAMILY SSF55781 236 318 1.5E-5 T 11-10-2018 AMK58_09220 f136401db6897c74f361bb2741cbb241 381 Pfam PF13477 Glycosyl transferase 4-like 4 141 1.1E-17 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AMK58_09220 f136401db6897c74f361bb2741cbb241 381 Pfam PF13692 Glycosyl transferases group 1 190 331 7.0E-25 T 11-10-2018 AMK58_09220 f136401db6897c74f361bb2741cbb241 381 Gene3D G3DSA:3.40.50.2000 174 350 1.2E-48 T 11-10-2018 AMK58_09220 f136401db6897c74f361bb2741cbb241 381 Gene3D G3DSA:3.40.50.2000 10 363 1.2E-48 T 11-10-2018 AMK58_09220 f136401db6897c74f361bb2741cbb241 381 SUPERFAMILY SSF53756 10 366 4.93E-58 T 11-10-2018 AMK58_06305 53de8601022b15336d350c1a576fae7c 156 Gene3D G3DSA:3.10.129.10 3 156 1.7E-62 T 11-10-2018 AMK58_06305 53de8601022b15336d350c1a576fae7c 156 SUPERFAMILY SSF54637 13 152 1.5E-49 T 11-10-2018 IPR029069 HotDog domain superfamily AMK58_06305 53de8601022b15336d350c1a576fae7c 156 Pfam PF07977 FabA-like domain 22 146 2.0E-38 T 11-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AMK58_06305 53de8601022b15336d350c1a576fae7c 156 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 13 154 34.442 T 11-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AMK58_06305 53de8601022b15336d350c1a576fae7c 156 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 13 151 1.9E-58 T 11-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AMK58_07665 924c495e206efee1346b569d1b9aa895 361 SUPERFAMILY SSF53383 6 360 1.22E-77 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_07665 924c495e206efee1346b569d1b9aa895 361 Pfam PF00155 Aminotransferase class I and II 50 355 2.1E-40 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMK58_07665 924c495e206efee1346b569d1b9aa895 361 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 5 360 48.246 T 11-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 AMK58_07665 924c495e206efee1346b569d1b9aa895 361 Gene3D G3DSA:3.40.640.10 40 264 6.4E-97 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_07665 924c495e206efee1346b569d1b9aa895 361 Gene3D G3DSA:3.90.1150.10 12 352 6.4E-97 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_23110 c57db84af14b12d06bc20b38f98a11a9 68 SUPERFAMILY SSF160582 7 66 1.12E-23 T 11-10-2018 IPR038020 MbtH-like domain superfamily AMK58_23110 c57db84af14b12d06bc20b38f98a11a9 68 Pfam PF03621 MbtH-like protein 8 57 1.6E-24 T 11-10-2018 IPR005153 MbtH-like domain AMK58_23110 c57db84af14b12d06bc20b38f98a11a9 68 SMART SM00923 8 58 6.3E-26 T 11-10-2018 IPR005153 MbtH-like domain AMK58_23110 c57db84af14b12d06bc20b38f98a11a9 68 Gene3D G3DSA:3.90.820.10 3 68 7.8E-29 T 11-10-2018 AMK58_12360 a7d74b278dc10312964b7d0f9490e473 322 SUPERFAMILY SSF51735 2 308 2.99E-77 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_12360 a7d74b278dc10312964b7d0f9490e473 322 Gene3D G3DSA:3.90.25.10 169 304 1.9E-107 T 11-10-2018 AMK58_12360 a7d74b278dc10312964b7d0f9490e473 322 Gene3D G3DSA:3.40.50.720 7 295 1.9E-107 T 11-10-2018 AMK58_12360 a7d74b278dc10312964b7d0f9490e473 322 Pfam PF01370 NAD dependent epimerase/dehydratase family 7 238 7.3E-78 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMK58_12360 a7d74b278dc10312964b7d0f9490e473 322 Hamap MF_00956 GDP-L-fucose synthase [fcl]. 4 306 48.995 T 11-10-2018 IPR028614 GDP-L-fucose synthase/GDP-L-colitose synthase GO:0009226|GO:0016491 KEGG: 00051+1.1.1.271|KEGG: 00520+1.1.1.271|MetaCyc: PWY-66|Reactome: R-HSA-6787639 AMK58_13960 b67e601abcb34e6a51a55928b47fc759 133 TIGRFAM TIGR01300 CPA3_mnhG_phaG: monovalent cation/proton antiporter, MnhG/PhaG subunit 18 105 7.7E-28 T 11-10-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 AMK58_13960 b67e601abcb34e6a51a55928b47fc759 133 Pfam PF03334 Na+/H+ antiporter subunit 18 98 1.8E-20 T 11-10-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 AMK58_21730 017b34c277ff92bc8a9adfa1121f3290 254 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 9 220 9.7E-35 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMK58_21730 017b34c277ff92bc8a9adfa1121f3290 254 SMART SM00855 8 184 2.4E-17 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMK58_21730 017b34c277ff92bc8a9adfa1121f3290 254 SUPERFAMILY SSF53254 7 236 1.16E-45 T 11-10-2018 IPR029033 Histidine phosphatase superfamily AMK58_21730 017b34c277ff92bc8a9adfa1121f3290 254 Gene3D G3DSA:3.40.50.1240 1 228 4.1E-46 T 11-10-2018 IPR029033 Histidine phosphatase superfamily AMK58_21730 017b34c277ff92bc8a9adfa1121f3290 254 PIRSF PIRSF000709 3 200 3.0E-19 T 11-10-2018 AMK58_21730 017b34c277ff92bc8a9adfa1121f3290 254 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 11 20 - T 11-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 AMK58_11715 c7385e6d902803d10c1f469c0f9f745c 438 Pfam PF01551 Peptidase family M23 335 425 2.4E-20 T 11-10-2018 IPR016047 Peptidase M23 AMK58_11715 c7385e6d902803d10c1f469c0f9f745c 438 Gene3D G3DSA:2.70.70.10 294 429 1.9E-24 T 11-10-2018 IPR011055 Duplicated hybrid motif AMK58_11715 c7385e6d902803d10c1f469c0f9f745c 438 SUPERFAMILY SSF51261 263 426 4.81E-27 T 11-10-2018 IPR011055 Duplicated hybrid motif AMK58_24740 351233232d26d94d5c1816442509f1db 470 SUPERFAMILY SSF51338 373 468 8.93E-12 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMK58_24740 351233232d26d94d5c1816442509f1db 470 SUPERFAMILY SSF51556 58 388 1.02E-70 T 11-10-2018 IPR032466 Metal-dependent hydrolase AMK58_24740 351233232d26d94d5c1816442509f1db 470 TIGRFAM TIGR02022 hutF: formiminoglutamate deiminase 12 467 8.5E-196 T 11-10-2018 IPR010252 Formiminoglutamate deiminase AMK58_24740 351233232d26d94d5c1816442509f1db 470 Pfam PF01979 Amidohydrolase family 56 443 1.4E-34 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AMK58_24740 351233232d26d94d5c1816442509f1db 470 Gene3D G3DSA:3.20.20.140 60 459 7.4E-184 T 11-10-2018 AMK58_24740 351233232d26d94d5c1816442509f1db 470 Gene3D G3DSA:2.30.40.10 17 447 7.4E-184 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMK58_17895 8c4a5fa60a303a1053bdc9d91936987e 781 SUPERFAMILY SSF88697 5 195 1.59E-42 T 11-10-2018 IPR015947 PUA-like superfamily AMK58_17895 8c4a5fa60a303a1053bdc9d91936987e 781 TIGRFAM TIGR00763 lon: endopeptidase La 7 766 6.7E-275 T 11-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 AMK58_17895 8c4a5fa60a303a1053bdc9d91936987e 781 SMART SM00464 5 197 7.4E-49 T 11-10-2018 IPR003111 Lon, substrate-binding domain AMK58_17895 8c4a5fa60a303a1053bdc9d91936987e 781 PIRSF PIRSF001174 2 771 6.2E-284 T 11-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 AMK58_17895 8c4a5fa60a303a1053bdc9d91936987e 781 SUPERFAMILY SSF52540 308 579 1.52E-50 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_17895 8c4a5fa60a303a1053bdc9d91936987e 781 Gene3D G3DSA:2.30.130.40 2 113 2.3E-31 T 11-10-2018 AMK58_17895 8c4a5fa60a303a1053bdc9d91936987e 781 Gene3D G3DSA:1.20.58.1480 116 240 2.4E-35 T 11-10-2018 AMK58_17895 8c4a5fa60a303a1053bdc9d91936987e 781 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 566 768 2.3E-83 T 11-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 AMK58_17895 8c4a5fa60a303a1053bdc9d91936987e 781 Gene3D G3DSA:1.10.8.60 488 580 5.8E-27 T 11-10-2018 AMK58_17895 8c4a5fa60a303a1053bdc9d91936987e 781 SMART SM00382 344 489 5.6E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_17895 8c4a5fa60a303a1053bdc9d91936987e 781 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 672 680 - T 11-10-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 AMK58_17895 8c4a5fa60a303a1053bdc9d91936987e 781 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 699 718 1.1E-52 T 11-10-2018 AMK58_17895 8c4a5fa60a303a1053bdc9d91936987e 781 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 722 740 1.1E-52 T 11-10-2018 AMK58_17895 8c4a5fa60a303a1053bdc9d91936987e 781 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 591 607 1.1E-52 T 11-10-2018 AMK58_17895 8c4a5fa60a303a1053bdc9d91936987e 781 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 352 371 1.1E-52 T 11-10-2018 AMK58_17895 8c4a5fa60a303a1053bdc9d91936987e 781 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 669 688 1.1E-52 T 11-10-2018 AMK58_17895 8c4a5fa60a303a1053bdc9d91936987e 781 Gene3D G3DSA:3.30.230.10 590 779 3.9E-77 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMK58_17895 8c4a5fa60a303a1053bdc9d91936987e 781 SUPERFAMILY SSF54211 591 766 9.48E-51 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMK58_17895 8c4a5fa60a303a1053bdc9d91936987e 781 Hamap MF_01973 Lon protease [lon]. 6 768 66.964 T 11-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 AMK58_17895 8c4a5fa60a303a1053bdc9d91936987e 781 Gene3D G3DSA:3.40.50.300 310 487 1.4E-65 T 11-10-2018 AMK58_17895 8c4a5fa60a303a1053bdc9d91936987e 781 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 348 485 3.0E-20 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMK58_17895 8c4a5fa60a303a1053bdc9d91936987e 781 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 5 196 8.6E-39 T 11-10-2018 IPR003111 Lon, substrate-binding domain AMK58_13190 0b539762f6c1d2972177f0a3355f933f 785 SUPERFAMILY SSF56024 21 303 1.84E-30 T 11-10-2018 AMK58_13190 0b539762f6c1d2972177f0a3355f933f 785 SMART SM00155 409 436 8.3E-6 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 AMK58_13190 0b539762f6c1d2972177f0a3355f933f 785 SMART SM00155 163 190 0.16 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 AMK58_13190 0b539762f6c1d2972177f0a3355f933f 785 Gene3D G3DSA:3.30.870.10 43 250 3.0E-25 T 11-10-2018 AMK58_13190 0b539762f6c1d2972177f0a3355f933f 785 SUPERFAMILY SSF56024 313 450 1.88E-22 T 11-10-2018 AMK58_13190 0b539762f6c1d2972177f0a3355f933f 785 Gene3D G3DSA:3.30.870.10 309 454 2.4E-18 T 11-10-2018 AMK58_13190 0b539762f6c1d2972177f0a3355f933f 785 Pfam PF13091 PLD-like domain 320 450 3.9E-10 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AMK58_13190 0b539762f6c1d2972177f0a3355f933f 785 Pfam PF00614 Phospholipase D Active site motif 167 189 6.9E-6 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 AMK58_13190 0b539762f6c1d2972177f0a3355f933f 785 Pfam PF09335 SNARE associated Golgi protein 615 730 6.2E-20 T 11-10-2018 IPR032816 SNARE associated Golgi protein AMK58_17385 cd7c8a0cfe79e5cf8ca3c21d7c6e6e55 386 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 64 383 1.3E-68 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMK58_17385 cd7c8a0cfe79e5cf8ca3c21d7c6e6e55 386 Gene3D G3DSA:2.40.30.170 76 309 1.7E-58 T 11-10-2018 AMK58_17385 cd7c8a0cfe79e5cf8ca3c21d7c6e6e55 386 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 73 302 1.5E-31 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMK58_17385 cd7c8a0cfe79e5cf8ca3c21d7c6e6e55 386 SUPERFAMILY SSF111369 77 302 2.48E-27 T 11-10-2018 AMK58_17385 cd7c8a0cfe79e5cf8ca3c21d7c6e6e55 386 Gene3D G3DSA:1.10.287.470 121 198 1.7E-58 T 11-10-2018 AMK58_17385 cd7c8a0cfe79e5cf8ca3c21d7c6e6e55 386 Gene3D G3DSA:2.40.50.100 87 232 1.7E-58 T 11-10-2018 AMK58_17385 cd7c8a0cfe79e5cf8ca3c21d7c6e6e55 386 Gene3D G3DSA:2.40.420.20 73 366 1.7E-58 T 11-10-2018 AMK58_18370 531ee16883960d0358d40057439bc796 347 Gene3D G3DSA:3.40.50.2000 154 294 5.8E-25 T 11-10-2018 AMK58_18370 531ee16883960d0358d40057439bc796 347 TIGRFAM TIGR03590 PseG: UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase 1 282 2.9E-54 T 11-10-2018 IPR020023 UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase AMK58_18370 531ee16883960d0358d40057439bc796 347 Gene3D G3DSA:3.40.50.11190 1 153 2.8E-19 T 11-10-2018 AMK58_18370 531ee16883960d0358d40057439bc796 347 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 236 322 1.9E-4 T 11-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 AMK58_18370 531ee16883960d0358d40057439bc796 347 SUPERFAMILY SSF53756 127 342 1.08E-13 T 11-10-2018 AMK58_06625 14e845c9e3e864fb61631127792159e1 878 Pfam PF12860 PAS fold 247 362 4.1E-17 T 11-10-2018 AMK58_06625 14e845c9e3e864fb61631127792159e1 878 Gene3D G3DSA:3.30.565.10 575 743 2.0E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_06625 14e845c9e3e864fb61631127792159e1 878 Gene3D G3DSA:3.30.450.20 235 370 3.7E-8 T 11-10-2018 AMK58_06625 14e845c9e3e864fb61631127792159e1 878 Gene3D G3DSA:3.30.450.20 371 501 3.0E-12 T 11-10-2018 AMK58_06625 14e845c9e3e864fb61631127792159e1 878 Pfam PF00512 His Kinase A (phospho-acceptor) domain 508 570 7.5E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_06625 14e845c9e3e864fb61631127792159e1 878 SUPERFAMILY SSF55785 103 223 1.12E-16 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_06625 14e845c9e3e864fb61631127792159e1 878 Pfam PF13188 PAS domain 384 433 7.3E-6 T 11-10-2018 IPR000014 PAS domain AMK58_06625 14e845c9e3e864fb61631127792159e1 878 SMART SM00448 759 872 1.2E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_06625 14e845c9e3e864fb61631127792159e1 878 PRINTS PR00344 Bacterial sensor protein C-terminal signature 685 695 7.8E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_06625 14e845c9e3e864fb61631127792159e1 878 PRINTS PR00344 Bacterial sensor protein C-terminal signature 723 736 7.8E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_06625 14e845c9e3e864fb61631127792159e1 878 PRINTS PR00344 Bacterial sensor protein C-terminal signature 698 716 7.8E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_06625 14e845c9e3e864fb61631127792159e1 878 PRINTS PR00344 Bacterial sensor protein C-terminal signature 667 681 7.8E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_06625 14e845c9e3e864fb61631127792159e1 878 SUPERFAMILY SSF52172 759 877 1.71E-30 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_06625 14e845c9e3e864fb61631127792159e1 878 Gene3D G3DSA:3.30.450.20 104 227 7.5E-18 T 11-10-2018 AMK58_06625 14e845c9e3e864fb61631127792159e1 878 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 380 499 4.4E-11 T 11-10-2018 IPR000014 PAS domain AMK58_06625 14e845c9e3e864fb61631127792159e1 878 Pfam PF08448 PAS fold 131 229 4.1E-5 T 11-10-2018 IPR013656 PAS fold-4 AMK58_06625 14e845c9e3e864fb61631127792159e1 878 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 619 737 3.6E-13 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_06625 14e845c9e3e864fb61631127792159e1 878 Gene3D G3DSA:3.40.50.2300 754 878 4.7E-29 T 11-10-2018 AMK58_06625 14e845c9e3e864fb61631127792159e1 878 SMART SM00086 187 229 0.52 T 11-10-2018 IPR001610 PAC motif AMK58_06625 14e845c9e3e864fb61631127792159e1 878 SMART SM00086 452 492 6.6 T 11-10-2018 IPR001610 PAC motif AMK58_06625 14e845c9e3e864fb61631127792159e1 878 SUPERFAMILY SSF55874 563 739 1.26E-33 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_06625 14e845c9e3e864fb61631127792159e1 878 SUPERFAMILY SSF47384 500 570 4.71E-11 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_06625 14e845c9e3e864fb61631127792159e1 878 Pfam PF00072 Response regulator receiver domain 761 873 1.9E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_06625 14e845c9e3e864fb61631127792159e1 878 SMART SM00091 383 449 19.0 T 11-10-2018 IPR000014 PAS domain AMK58_06625 14e845c9e3e864fb61631127792159e1 878 SMART SM00091 114 181 0.96 T 11-10-2018 IPR000014 PAS domain AMK58_06625 14e845c9e3e864fb61631127792159e1 878 SMART SM00091 241 308 98.0 T 11-10-2018 IPR000014 PAS domain AMK58_06625 14e845c9e3e864fb61631127792159e1 878 SUPERFAMILY SSF55785 354 490 5.76E-11 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_06625 14e845c9e3e864fb61631127792159e1 878 Gene3D G3DSA:1.10.287.130 502 571 1.5E-18 T 11-10-2018 AMK58_06625 14e845c9e3e864fb61631127792159e1 878 SMART SM00387 615 739 1.0E-26 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_06625 14e845c9e3e864fb61631127792159e1 878 SMART SM00388 507 573 4.4E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_20385 a796243dd571be791fabc690299ccf47 325 Gene3D G3DSA:3.40.50.11660 122 312 1.5E-40 T 11-10-2018 IPR038577 GT10-like superfamily AMK58_20385 a796243dd571be791fabc690299ccf47 325 SUPERFAMILY SSF53756 61 299 1.85E-39 T 11-10-2018 AMK58_20385 a796243dd571be791fabc690299ccf47 325 Pfam PF00852 Glycosyltransferase family 10 (fucosyltransferase) C-term 180 297 2.0E-16 T 11-10-2018 IPR001503 Glycosyl transferase family 10 GO:0006486|GO:0008417|GO:0016020 AMK58_09280 8cce288396c7a2794dde5a089ce68430 208 Pfam PF07499 RuvA, C-terminal domain 160 207 1.5E-10 T 11-10-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 AMK58_09280 8cce288396c7a2794dde5a089ce68430 208 SUPERFAMILY SSF50249 1 62 2.91E-15 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_09280 8cce288396c7a2794dde5a089ce68430 208 SUPERFAMILY SSF47781 65 133 2.07E-20 T 11-10-2018 IPR010994 RuvA domain 2-like AMK58_09280 8cce288396c7a2794dde5a089ce68430 208 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 207 27.335 T 11-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 AMK58_09280 8cce288396c7a2794dde5a089ce68430 208 Gene3D G3DSA:1.10.150.20 66 137 1.6E-22 T 11-10-2018 AMK58_09280 8cce288396c7a2794dde5a089ce68430 208 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 186 1.3E-35 T 11-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 AMK58_09280 8cce288396c7a2794dde5a089ce68430 208 Pfam PF01330 RuvA N terminal domain 1 61 1.4E-18 T 11-10-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 AMK58_09280 8cce288396c7a2794dde5a089ce68430 208 Gene3D G3DSA:1.10.8.10 157 206 3.0E-8 T 11-10-2018 AMK58_09280 8cce288396c7a2794dde5a089ce68430 208 Pfam PF14520 Helix-hairpin-helix domain 71 129 1.2E-12 T 11-10-2018 AMK58_09280 8cce288396c7a2794dde5a089ce68430 208 SUPERFAMILY SSF46929 160 207 1.96E-8 T 11-10-2018 IPR036267 RuvA, C-terminal domain superfamily AMK58_09280 8cce288396c7a2794dde5a089ce68430 208 SMART SM00278 72 91 100.0 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMK58_09280 8cce288396c7a2794dde5a089ce68430 208 SMART SM00278 107 126 4.8 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMK58_09280 8cce288396c7a2794dde5a089ce68430 208 Gene3D G3DSA:2.40.50.140 1 65 2.9E-21 T 11-10-2018 AMK58_01040 6e3e7cb08a709bf441477ee4037adb07 421 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 179 418 1.5E-65 T 11-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 AMK58_01040 6e3e7cb08a709bf441477ee4037adb07 421 Pfam PF11812 Domain of unknown function (DUF3333) 17 155 6.4E-51 T 11-10-2018 IPR024573 Domain of unknown function DUF3333 AMK58_01040 6e3e7cb08a709bf441477ee4037adb07 421 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 218 417 2.2E-22 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_01040 6e3e7cb08a709bf441477ee4037adb07 421 SUPERFAMILY SSF161098 195 414 4.71E-36 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_01040 6e3e7cb08a709bf441477ee4037adb07 421 Gene3D G3DSA:1.10.3720.10 196 420 4.2E-34 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_03505 7b5689c5ac2a028f1687333df5f9ef8d 266 Pfam PF13501 Sulfur oxidation protein SoxY 40 143 2.4E-26 T 11-10-2018 IPR032711 Ig-like SoxY domain AMK58_03505 7b5689c5ac2a028f1687333df5f9ef8d 266 Pfam PF08770 Sulphur oxidation protein SoxZ 172 252 9.7E-11 T 11-10-2018 IPR014880 Sulphur oxidation protein SoxZ AMK58_03505 7b5689c5ac2a028f1687333df5f9ef8d 266 Gene3D G3DSA:2.60.40.10 167 258 7.4E-9 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_03505 7b5689c5ac2a028f1687333df5f9ef8d 266 SUPERFAMILY SSF81296 159 257 2.66E-14 T 11-10-2018 IPR014756 Immunoglobulin E-set AMK58_03505 7b5689c5ac2a028f1687333df5f9ef8d 266 Gene3D G3DSA:2.60.40.2470 28 143 2.2E-24 T 11-10-2018 IPR038162 Ig-like SoxY domain superfamily AMK58_03505 7b5689c5ac2a028f1687333df5f9ef8d 266 TIGRFAM TIGR04557 fuse_rel_SoxYZ: quinoprotein dehydrogenase-associated SoxYZ-like carrier 34 251 2.2E-66 T 11-10-2018 IPR030831 Quinoprotein dehydrogenase-associated SoxYZ-like carrier AMK58_01485 1661f7e68524d75ee7a9bbf514a72a58 302 SUPERFAMILY SSF53223 4 123 1.92E-40 T 11-10-2018 AMK58_01485 1661f7e68524d75ee7a9bbf514a72a58 302 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 77 102 - T 11-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMK58_01485 1661f7e68524d75ee7a9bbf514a72a58 302 Hamap MF_01576 Bifunctional protein FolD [folD]. 4 292 38.491 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMK58_01485 1661f7e68524d75ee7a9bbf514a72a58 302 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 158 178 8.1E-82 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMK58_01485 1661f7e68524d75ee7a9bbf514a72a58 302 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 207 236 8.1E-82 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMK58_01485 1661f7e68524d75ee7a9bbf514a72a58 302 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 35 57 8.1E-82 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMK58_01485 1661f7e68524d75ee7a9bbf514a72a58 302 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 265 283 8.1E-82 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMK58_01485 1661f7e68524d75ee7a9bbf514a72a58 302 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 111 132 8.1E-82 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMK58_01485 1661f7e68524d75ee7a9bbf514a72a58 302 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 248 264 8.1E-82 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMK58_01485 1661f7e68524d75ee7a9bbf514a72a58 302 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 76 103 8.1E-82 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMK58_01485 1661f7e68524d75ee7a9bbf514a72a58 302 Gene3D G3DSA:3.40.50.10860 9 285 6.1E-105 T 11-10-2018 AMK58_01485 1661f7e68524d75ee7a9bbf514a72a58 302 SUPERFAMILY SSF51735 124 289 5.73E-50 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_01485 1661f7e68524d75ee7a9bbf514a72a58 302 Gene3D G3DSA:3.40.50.720 7 268 6.1E-105 T 11-10-2018 AMK58_01485 1661f7e68524d75ee7a9bbf514a72a58 302 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 269 277 - T 11-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMK58_01485 1661f7e68524d75ee7a9bbf514a72a58 302 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 125 290 2.4E-64 T 11-10-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMK58_01485 1661f7e68524d75ee7a9bbf514a72a58 302 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 6 122 3.8E-39 T 11-10-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMK58_01700 bb8111cd985680839b8e097125166365 130 Pfam PF04379 ApaG domain 20 104 1.3E-35 T 11-10-2018 IPR007474 ApaG domain AMK58_01700 bb8111cd985680839b8e097125166365 130 Gene3D G3DSA:2.60.40.1470 2 129 9.0E-49 T 11-10-2018 IPR036767 ApaG domain superfamily AMK58_01700 bb8111cd985680839b8e097125166365 130 SUPERFAMILY SSF110069 5 126 6.02E-49 T 11-10-2018 IPR036767 ApaG domain superfamily AMK58_01700 bb8111cd985680839b8e097125166365 130 Hamap MF_00791 Protein ApaG [apaG]. 2 130 32.169 T 11-10-2018 IPR023065 Uncharacterised protein family ApaG AMK58_22175 d798beb6fe0bbc857d652ef9486e11d9 443 Gene3D G3DSA:2.30.40.10 18 429 1.9E-106 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMK58_22175 d798beb6fe0bbc857d652ef9486e11d9 443 Pfam PF01979 Amidohydrolase family 59 413 2.9E-51 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AMK58_22175 d798beb6fe0bbc857d652ef9486e11d9 443 SUPERFAMILY SSF51556 62 366 7.29E-67 T 11-10-2018 IPR032466 Metal-dependent hydrolase AMK58_22175 d798beb6fe0bbc857d652ef9486e11d9 443 SUPERFAMILY SSF51338 4 420 6.74E-19 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMK58_22175 d798beb6fe0bbc857d652ef9486e11d9 443 Gene3D G3DSA:3.20.20.140 63 358 1.9E-106 T 11-10-2018 AMK58_07405 aacff7bb0ee455b780c4c57b4e630de3 333 Hamap MF_02065 Endolytic murein transglycosylase [mltG]. 7 320 33.885 T 11-10-2018 IPR003770 Endolytic murein transglycosylase AMK58_07405 aacff7bb0ee455b780c4c57b4e630de3 333 Gene3D G3DSA:1.10.8.1150 37 107 3.6E-11 T 11-10-2018 AMK58_07405 aacff7bb0ee455b780c4c57b4e630de3 333 Pfam PF02618 YceG-like family 41 313 3.2E-82 T 11-10-2018 IPR003770 Endolytic murein transglycosylase AMK58_07405 aacff7bb0ee455b780c4c57b4e630de3 333 Gene3D G3DSA:3.30.160.60 286 323 4.4E-17 T 11-10-2018 AMK58_07405 aacff7bb0ee455b780c4c57b4e630de3 333 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 140 315 5.0E-64 T 11-10-2018 IPR003770 Endolytic murein transglycosylase AMK58_10685 d57858125563f5ee857fa2cd33fdd193 102 SUPERFAMILY SSF47090 27 91 7.06E-16 T 11-10-2018 IPR036365 PGBD-like superfamily AMK58_10685 d57858125563f5ee857fa2cd33fdd193 102 Pfam PF01471 Putative peptidoglycan binding domain 37 87 4.8E-11 T 11-10-2018 IPR002477 Peptidoglycan binding-like AMK58_10685 d57858125563f5ee857fa2cd33fdd193 102 Gene3D G3DSA:1.10.101.10 24 92 7.4E-12 T 11-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 AMK58_18940 2aba7cd9218901b25253bf77d86d8398 584 PRINTS PR00344 Bacterial sensor protein C-terminal signature 565 578 7.8E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_18940 2aba7cd9218901b25253bf77d86d8398 584 PRINTS PR00344 Bacterial sensor protein C-terminal signature 528 538 7.8E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_18940 2aba7cd9218901b25253bf77d86d8398 584 PRINTS PR00344 Bacterial sensor protein C-terminal signature 541 559 7.8E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_18940 2aba7cd9218901b25253bf77d86d8398 584 PRINTS PR00344 Bacterial sensor protein C-terminal signature 510 524 7.8E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_18940 2aba7cd9218901b25253bf77d86d8398 584 SUPERFAMILY SSF103190 56 194 2.75E-17 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily AMK58_18940 2aba7cd9218901b25253bf77d86d8398 584 Pfam PF00512 His Kinase A (phospho-acceptor) domain 361 428 2.6E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_18940 2aba7cd9218901b25253bf77d86d8398 584 SUPERFAMILY SSF47384 356 429 2.35E-11 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_18940 2aba7cd9218901b25253bf77d86d8398 584 SUPERFAMILY SSF55874 424 579 1.96E-38 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_18940 2aba7cd9218901b25253bf77d86d8398 584 PIRSF PIRSF036431 4 584 5.0E-178 T 11-10-2018 IPR017055 Signal transduction histidine kinase, DctB (C4-dicarboxylate transport system regulator) AMK58_18940 2aba7cd9218901b25253bf77d86d8398 584 Gene3D G3DSA:3.30.450.20 59 183 3.8E-63 T 11-10-2018 AMK58_18940 2aba7cd9218901b25253bf77d86d8398 584 Gene3D G3DSA:3.30.450.20 46 281 3.8E-63 T 11-10-2018 AMK58_18940 2aba7cd9218901b25253bf77d86d8398 584 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 473 579 1.7E-20 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_18940 2aba7cd9218901b25253bf77d86d8398 584 Gene3D G3DSA:3.30.565.10 433 584 4.6E-39 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_18940 2aba7cd9218901b25253bf77d86d8398 584 SMART SM00388 361 429 6.0E-8 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_18940 2aba7cd9218901b25253bf77d86d8398 584 SMART SM00387 471 581 7.2E-31 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_18940 2aba7cd9218901b25253bf77d86d8398 584 Gene3D G3DSA:1.10.287.130 338 424 7.6E-20 T 11-10-2018 AMK58_11090 974ec21c2cc3a76d2db36852d0d4e758 254 PRINTS PR00111 Alpha/beta hydrolase fold signature 96 109 4.0E-8 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_11090 974ec21c2cc3a76d2db36852d0d4e758 254 PRINTS PR00111 Alpha/beta hydrolase fold signature 196 210 4.0E-8 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_11090 974ec21c2cc3a76d2db36852d0d4e758 254 PRINTS PR00111 Alpha/beta hydrolase fold signature 82 95 4.0E-8 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_11090 974ec21c2cc3a76d2db36852d0d4e758 254 PRINTS PR00111 Alpha/beta hydrolase fold signature 39 54 4.0E-8 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_11090 974ec21c2cc3a76d2db36852d0d4e758 254 PRINTS PR00412 Epoxide hydrolase signature 227 249 2.5E-6 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMK58_11090 974ec21c2cc3a76d2db36852d0d4e758 254 PRINTS PR00412 Epoxide hydrolase signature 82 95 2.5E-6 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMK58_11090 974ec21c2cc3a76d2db36852d0d4e758 254 PRINTS PR00412 Epoxide hydrolase signature 39 54 2.5E-6 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMK58_11090 974ec21c2cc3a76d2db36852d0d4e758 254 Gene3D G3DSA:3.40.50.1820 2 251 1.7E-66 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_11090 974ec21c2cc3a76d2db36852d0d4e758 254 SUPERFAMILY SSF53474 4 250 6.91E-62 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_11090 974ec21c2cc3a76d2db36852d0d4e758 254 Pfam PF12697 Alpha/beta hydrolase family 16 245 1.4E-19 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_09480 b7ce0c9ed4c42e209f68ef3a062569fe 442 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 16 336 6.1E-57 T 11-10-2018 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 AMK58_09480 b7ce0c9ed4c42e209f68ef3a062569fe 442 SUPERFAMILY SSF51445 5 360 3.27E-76 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily AMK58_09480 b7ce0c9ed4c42e209f68ef3a062569fe 442 ProSitePatterns PS00659 Glycosyl hydrolases family 5 signature. 158 167 - T 11-10-2018 IPR018087 Glycoside hydrolase, family 5, conserved site GO:0004553|GO:0005975 AMK58_09480 b7ce0c9ed4c42e209f68ef3a062569fe 442 Gene3D G3DSA:3.20.20.80 3 362 1.8E-112 T 11-10-2018 AMK58_20370 9c015ec6f0ad854975e36904dd720606 261 Pfam PF02709 N-terminal domain of galactosyltransferase 121 168 1.2E-12 T 11-10-2018 IPR027791 Galactosyltransferase, C-terminal Reactome: R-HSA-2022854|Reactome: R-HSA-975577 AMK58_20370 9c015ec6f0ad854975e36904dd720606 261 Pfam PF13733 N-terminal region of glycosyl transferase group 7 5 86 4.3E-14 T 11-10-2018 IPR027995 Galactosyltransferase, N-terminal Reactome: R-HSA-2022854|Reactome: R-HSA-975577 AMK58_20370 9c015ec6f0ad854975e36904dd720606 261 SUPERFAMILY SSF53448 7 172 8.44E-20 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_20370 9c015ec6f0ad854975e36904dd720606 261 PRINTS PR02050 Beta-1,4-galactosyltransferase family signature 140 158 1.1E-15 T 11-10-2018 IPR003859 Beta-1,4-galactosyltransferase GO:0005975|GO:0016757 Reactome: R-HSA-2022854|Reactome: R-HSA-975577 AMK58_20370 9c015ec6f0ad854975e36904dd720606 261 PRINTS PR02050 Beta-1,4-galactosyltransferase family signature 118 139 1.1E-15 T 11-10-2018 IPR003859 Beta-1,4-galactosyltransferase GO:0005975|GO:0016757 Reactome: R-HSA-2022854|Reactome: R-HSA-975577 AMK58_20370 9c015ec6f0ad854975e36904dd720606 261 PRINTS PR02050 Beta-1,4-galactosyltransferase family signature 44 63 1.1E-15 T 11-10-2018 IPR003859 Beta-1,4-galactosyltransferase GO:0005975|GO:0016757 Reactome: R-HSA-2022854|Reactome: R-HSA-975577 AMK58_20370 9c015ec6f0ad854975e36904dd720606 261 PRINTS PR02050 Beta-1,4-galactosyltransferase family signature 73 92 1.1E-15 T 11-10-2018 IPR003859 Beta-1,4-galactosyltransferase GO:0005975|GO:0016757 Reactome: R-HSA-2022854|Reactome: R-HSA-975577 AMK58_20370 9c015ec6f0ad854975e36904dd720606 261 Gene3D G3DSA:3.90.550.10 2 229 3.0E-43 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_23080 bb475aac07dd07a9bb99b03f83accd29 523 SUPERFAMILY SSF56801 12 516 3.01E-143 T 11-10-2018 AMK58_23080 bb475aac07dd07a9bb99b03f83accd29 523 Gene3D G3DSA:3.30.300.310 414 518 8.1E-31 T 11-10-2018 AMK58_23080 bb475aac07dd07a9bb99b03f83accd29 523 ProSitePatterns PS00455 Putative AMP-binding domain signature. 174 185 - T 11-10-2018 IPR020845 AMP-binding, conserved site AMK58_23080 bb475aac07dd07a9bb99b03f83accd29 523 Gene3D G3DSA:3.40.50.12780 28 411 1.7E-135 T 11-10-2018 AMK58_23080 bb475aac07dd07a9bb99b03f83accd29 523 Pfam PF13193 AMP-binding enzyme C-terminal domain 427 503 4.8E-15 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMK58_23080 bb475aac07dd07a9bb99b03f83accd29 523 Pfam PF00501 AMP-binding enzyme 37 418 2.9E-101 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMK58_12235 e8c9fa9f68e4fe31fd86db98ab223d38 455 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 3.5E-22 T 11-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMK58_12235 e8c9fa9f68e4fe31fd86db98ab223d38 455 Gene3D G3DSA:1.10.260.30 327 449 6.4E-44 T 11-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 AMK58_12235 e8c9fa9f68e4fe31fd86db98ab223d38 455 SMART SM00382 98 408 1.5E-4 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_12235 e8c9fa9f68e4fe31fd86db98ab223d38 455 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 429 1.0E-181 T 11-10-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 AMK58_12235 e8c9fa9f68e4fe31fd86db98ab223d38 455 Pfam PF00448 SRP54-type protein, GTPase domain 102 295 1.0E-68 T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMK58_12235 e8c9fa9f68e4fe31fd86db98ab223d38 455 Gene3D G3DSA:1.20.120.140 5 305 5.4E-118 T 11-10-2018 AMK58_12235 e8c9fa9f68e4fe31fd86db98ab223d38 455 SUPERFAMILY SSF52540 42 354 3.98E-51 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_12235 e8c9fa9f68e4fe31fd86db98ab223d38 455 Gene3D G3DSA:3.40.50.300 90 284 5.4E-118 T 11-10-2018 AMK58_12235 e8c9fa9f68e4fe31fd86db98ab223d38 455 SMART SM00963 1 86 3.6E-37 T 11-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMK58_12235 e8c9fa9f68e4fe31fd86db98ab223d38 455 Pfam PF02978 Signal peptide binding domain 328 427 1.3E-32 T 11-10-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 AMK58_12235 e8c9fa9f68e4fe31fd86db98ab223d38 455 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 447 33.323 T 11-10-2018 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 AMK58_12235 e8c9fa9f68e4fe31fd86db98ab223d38 455 SUPERFAMILY SSF47446 328 428 3.27E-37 T 11-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 AMK58_12235 e8c9fa9f68e4fe31fd86db98ab223d38 455 SMART SM00962 99 295 2.9E-106 T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMK58_12235 e8c9fa9f68e4fe31fd86db98ab223d38 455 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 268 281 - T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMK58_20635 d0a51702dd0033e9d3f325164c1bb2cc 286 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 19 277 4.7E-126 T 11-10-2018 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 AMK58_20635 d0a51702dd0033e9d3f325164c1bb2cc 286 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 18 276 1.4E-98 T 11-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 AMK58_20635 d0a51702dd0033e9d3f325164c1bb2cc 286 SUPERFAMILY SSF161098 17 269 3.14E-55 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_20635 d0a51702dd0033e9d3f325164c1bb2cc 286 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 268 6.0E-15 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_20635 d0a51702dd0033e9d3f325164c1bb2cc 286 Gene3D G3DSA:1.10.3720.10 21 276 3.5E-63 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_11430 0b8f5b5eb3284bb08dca7ba6c077b922 391 SUPERFAMILY SSF103473 6 386 3.14E-26 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_11430 0b8f5b5eb3284bb08dca7ba6c077b922 391 Pfam PF07690 Major Facilitator Superfamily 18 352 1.5E-8 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMK58_11430 0b8f5b5eb3284bb08dca7ba6c077b922 391 Gene3D G3DSA:1.20.1250.20 1 383 2.4E-21 T 11-10-2018 AMK58_00125 89ba702ed7c5e8eda074f9f5a46f6c51 133 SUPERFAMILY SSF46785 31 119 6.59E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_00125 89ba702ed7c5e8eda074f9f5a46f6c51 133 Gene3D G3DSA:1.10.10.10 11 127 3.2E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_00125 89ba702ed7c5e8eda074f9f5a46f6c51 133 SMART SM00347 25 129 0.0031 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_00125 89ba702ed7c5e8eda074f9f5a46f6c51 133 Pfam PF13463 Winged helix DNA-binding domain 42 106 6.5E-6 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_24570 50ea176db71f1c7126762fb7afe9b2c5 293 Gene3D G3DSA:3.90.550.10 1 220 1.6E-33 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_24570 50ea176db71f1c7126762fb7afe9b2c5 293 Pfam PF00535 Glycosyl transferase family 2 6 162 1.7E-17 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMK58_24570 50ea176db71f1c7126762fb7afe9b2c5 293 SUPERFAMILY SSF53448 2 226 2.98E-32 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_22450 cfc369287cf573e35e62daf559226f68 627 Gene3D G3DSA:2.140.10.10 23 627 5.9E-214 T 11-10-2018 AMK58_22450 cfc369287cf573e35e62daf559226f68 627 Pfam PF13360 PQQ-like domain 297 490 2.0E-4 T 11-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat AMK58_22450 cfc369287cf573e35e62daf559226f68 627 Pfam PF13360 PQQ-like domain 65 223 1.5E-14 T 11-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat AMK58_22450 cfc369287cf573e35e62daf559226f68 627 SUPERFAMILY SSF50998 31 573 5.76E-170 T 11-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily AMK58_22450 cfc369287cf573e35e62daf559226f68 627 TIGRFAM TIGR03075 PQQ_enz_alc_DH: PQQ-dependent dehydrogenase, methanol/ethanol family 18 561 1.8E-224 T 11-10-2018 IPR017512 PQQ-dependent dehydrogenase, methanol/ethanol family GO:0005509|GO:0016020|GO:0016614|GO:0055114 AMK58_22450 cfc369287cf573e35e62daf559226f68 627 SMART SM00564 448 492 130.0 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMK58_22450 cfc369287cf573e35e62daf559226f68 627 SMART SM00564 501 533 4.7E-6 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMK58_22450 cfc369287cf573e35e62daf559226f68 627 SMART SM00564 178 215 0.003 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMK58_22450 cfc369287cf573e35e62daf559226f68 627 SMART SM00564 132 164 2.3E-5 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMK58_22450 cfc369287cf573e35e62daf559226f68 627 SMART SM00564 264 319 52.0 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMK58_22450 cfc369287cf573e35e62daf559226f68 627 SMART SM00564 80 113 70.0 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMK58_22450 cfc369287cf573e35e62daf559226f68 627 Pfam PF01011 PQQ enzyme repeat 507 539 2.6E-8 T 11-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat AMK58_22450 cfc369287cf573e35e62daf559226f68 627 ProSitePatterns PS00364 Bacterial quinoprotein dehydrogenases signature 2. 260 281 - T 11-10-2018 IPR001479 Quinoprotein dehydrogenase, conserved site GO:0030288|GO:0055114 AMK58_01745 7eafa7ce5c4dc17f04566214ad7e37d3 102 Pfam PF12728 Helix-turn-helix domain 48 94 4.8E-9 T 11-10-2018 AMK58_01745 7eafa7ce5c4dc17f04566214ad7e37d3 102 SUPERFAMILY SSF46955 47 94 6.04E-5 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily AMK58_00400 302548726c8f3d97937bde0a255599fc 225 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 2 222 6.8E-83 T 11-10-2018 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMK58_00400 302548726c8f3d97937bde0a255599fc 225 Gene3D G3DSA:3.30.420.10 2 172 1.0E-53 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMK58_00400 302548726c8f3d97937bde0a255599fc 225 SUPERFAMILY SSF53098 1 169 1.66E-55 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMK58_00400 302548726c8f3d97937bde0a255599fc 225 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 3 168 8.2E-50 T 11-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMK58_00400 302548726c8f3d97937bde0a255599fc 225 SMART SM00479 2 172 3.6E-50 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AMK58_00400 302548726c8f3d97937bde0a255599fc 225 Pfam PF00929 Exonuclease 4 163 2.6E-37 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AMK58_24675 c522cc5683982d5f66d6869ea3cf425e 675 Gene3D G3DSA:1.20.1480.50 286 380 4.5E-17 T 11-10-2018 AMK58_24675 c522cc5683982d5f66d6869ea3cf425e 675 SMART SM00304 325 378 2.0E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_24675 c522cc5683982d5f66d6869ea3cf425e 675 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 490 640 5.4E-33 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_24675 c522cc5683982d5f66d6869ea3cf425e 675 SMART SM01358 43 296 1.2E-23 T 11-10-2018 IPR032255 Helical bimodular sensor domain AMK58_24675 c522cc5683982d5f66d6869ea3cf425e 675 Pfam PF00672 HAMP domain 325 374 6.6E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_24675 c522cc5683982d5f66d6869ea3cf425e 675 Gene3D G3DSA:1.10.287.950 381 674 2.7E-51 T 11-10-2018 AMK58_24675 c522cc5683982d5f66d6869ea3cf425e 675 SUPERFAMILY SSF58104 354 668 3.4E-58 T 11-10-2018 AMK58_24675 c522cc5683982d5f66d6869ea3cf425e 675 SMART SM00283 415 669 7.0E-41 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_05345 91a65baf0e6b01f76b562fae584d1d0f 335 Pfam PF00072 Response regulator receiver domain 11 125 3.0E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_05345 91a65baf0e6b01f76b562fae584d1d0f 335 SMART SM00448 9 125 1.3E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_05345 91a65baf0e6b01f76b562fae584d1d0f 335 Gene3D G3DSA:3.40.50.12740 8 164 4.2E-30 T 11-10-2018 AMK58_05345 91a65baf0e6b01f76b562fae584d1d0f 335 SUPERFAMILY SSF52172 8 137 1.85E-32 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_11915 6f6ec0bb8393fa9581c115ce555a51f8 616 SUPERFAMILY SSF53850 59 602 2.17E-113 T 11-10-2018 AMK58_11915 6f6ec0bb8393fa9581c115ce555a51f8 616 Gene3D G3DSA:3.40.190.10 38 600 1.2E-225 T 11-10-2018 AMK58_11915 6f6ec0bb8393fa9581c115ce555a51f8 616 Gene3D G3DSA:3.10.105.10 324 583 1.2E-225 T 11-10-2018 AMK58_11915 6f6ec0bb8393fa9581c115ce555a51f8 616 PIRSF PIRSF002741 9 607 4.5E-96 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMK58_11915 6f6ec0bb8393fa9581c115ce555a51f8 616 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 109 518 4.8E-76 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain AMK58_00855 e2608712d2a8c73a094466bff05e023a 185 Gene3D G3DSA:3.90.80.10 1 175 7.4E-69 T 11-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AMK58_00855 e2608712d2a8c73a094466bff05e023a 185 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 174 36.86 T 11-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AMK58_00855 e2608712d2a8c73a094466bff05e023a 185 Pfam PF00719 Inorganic pyrophosphatase 18 172 4.2E-56 T 11-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AMK58_00855 e2608712d2a8c73a094466bff05e023a 185 SUPERFAMILY SSF50324 4 173 3.53E-67 T 11-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AMK58_00855 e2608712d2a8c73a094466bff05e023a 185 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 66 72 - T 11-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AMK58_19350 3fe852d19249732aaff9cd18b64fda32 258 SUPERFAMILY SSF51206 10 116 7.46E-22 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like AMK58_19350 3fe852d19249732aaff9cd18b64fda32 258 SMART SM00100 124 237 4.6E-11 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_19350 3fe852d19249732aaff9cd18b64fda32 258 SMART SM00100 1 112 5.1E-5 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_19350 3fe852d19249732aaff9cd18b64fda32 258 Gene3D G3DSA:2.60.120.10 5 118 3.3E-25 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_19350 3fe852d19249732aaff9cd18b64fda32 258 Pfam PF00027 Cyclic nucleotide-binding domain 11 93 6.7E-19 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_19350 3fe852d19249732aaff9cd18b64fda32 258 Pfam PF00027 Cyclic nucleotide-binding domain 143 223 3.2E-18 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_19350 3fe852d19249732aaff9cd18b64fda32 258 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 187 204 - T 11-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site AMK58_19350 3fe852d19249732aaff9cd18b64fda32 258 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 59 76 - T 11-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site AMK58_19350 3fe852d19249732aaff9cd18b64fda32 258 SUPERFAMILY SSF51206 137 240 1.22E-23 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like AMK58_19350 3fe852d19249732aaff9cd18b64fda32 258 PRINTS PR00103 cAMP-dependent protein kinase signature 28 42 1.7E-8 T 11-10-2018 AMK58_19350 3fe852d19249732aaff9cd18b64fda32 258 PRINTS PR00103 cAMP-dependent protein kinase signature 13 27 1.7E-8 T 11-10-2018 AMK58_19350 3fe852d19249732aaff9cd18b64fda32 258 PRINTS PR00103 cAMP-dependent protein kinase signature 185 194 1.7E-8 T 11-10-2018 AMK58_19350 3fe852d19249732aaff9cd18b64fda32 258 PRINTS PR00103 cAMP-dependent protein kinase signature 197 208 1.7E-8 T 11-10-2018 AMK58_19350 3fe852d19249732aaff9cd18b64fda32 258 Gene3D G3DSA:2.60.120.10 131 242 2.4E-25 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_12340 fce056b5fd33c7308dad8d47e01afcd3 757 Pfam PF13807 G-rich domain on putative tyrosine kinase 417 492 1.1E-13 T 11-10-2018 IPR032807 Tyrosine kinase, G-rich domain AMK58_12340 fce056b5fd33c7308dad8d47e01afcd3 757 SUPERFAMILY SSF52540 561 741 4.09E-33 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_12340 fce056b5fd33c7308dad8d47e01afcd3 757 Pfam PF02706 Chain length determinant protein 38 122 8.3E-12 T 11-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 AMK58_12340 fce056b5fd33c7308dad8d47e01afcd3 757 Pfam PF13614 AAA domain 561 718 1.9E-8 T 11-10-2018 IPR025669 AAA domain AMK58_12340 fce056b5fd33c7308dad8d47e01afcd3 757 Gene3D G3DSA:3.40.50.300 487 757 9.2E-66 T 11-10-2018 AMK58_08700 8d73995dd659ebea65ecdbf6d7aed690 319 SUPERFAMILY SSF53335 164 306 1.14E-16 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_08700 8d73995dd659ebea65ecdbf6d7aed690 319 Gene3D G3DSA:3.40.50.150 157 316 1.6E-45 T 11-10-2018 AMK58_08700 8d73995dd659ebea65ecdbf6d7aed690 319 Pfam PF01728 FtsJ-like methyltransferase 164 251 2.5E-9 T 11-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 AMK58_02410 2d6a61007d826d8044862c473ef1af76 121 Pfam PF00072 Response regulator receiver domain 5 116 1.5E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_02410 2d6a61007d826d8044862c473ef1af76 121 Gene3D G3DSA:3.40.50.12740 2 120 1.2E-38 T 11-10-2018 AMK58_02410 2d6a61007d826d8044862c473ef1af76 121 SUPERFAMILY SSF52172 3 120 1.38E-38 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_02410 2d6a61007d826d8044862c473ef1af76 121 SMART SM00448 3 116 5.1E-38 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_15465 aeccc7017aa0e29c6cc9103c24ccca00 412 SUPERFAMILY SSF81891 152 409 6.41E-45 T 11-10-2018 AMK58_15465 aeccc7017aa0e29c6cc9103c24ccca00 412 Gene3D G3DSA:1.10.3090.10 152 321 6.2E-33 T 11-10-2018 AMK58_15465 aeccc7017aa0e29c6cc9103c24ccca00 412 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 189 241 5.9E-11 T 11-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 AMK58_15465 aeccc7017aa0e29c6cc9103c24ccca00 412 Gene3D G3DSA:3.30.460.10 7 150 2.6E-42 T 11-10-2018 AMK58_15465 aeccc7017aa0e29c6cc9103c24ccca00 412 SUPERFAMILY SSF81301 8 150 2.51E-40 T 11-10-2018 AMK58_15465 aeccc7017aa0e29c6cc9103c24ccca00 412 Pfam PF01743 Poly A polymerase head domain 33 154 4.8E-31 T 11-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 AMK58_15515 29e1379c63cca10dfa591d508d3201ca 75 Gene3D G3DSA:3.30.110.40 1 74 2.9E-28 T 11-10-2018 IPR036868 TusA-like domain superfamily AMK58_15515 29e1379c63cca10dfa591d508d3201ca 75 Pfam PF01206 Sulfurtransferase TusA 5 73 2.6E-21 T 11-10-2018 IPR001455 TusA-like domain AMK58_15515 29e1379c63cca10dfa591d508d3201ca 75 SUPERFAMILY SSF64307 3 73 1.83E-22 T 11-10-2018 IPR036868 TusA-like domain superfamily AMK58_15515 29e1379c63cca10dfa591d508d3201ca 75 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 6 30 - T 11-10-2018 IPR001455 TusA-like domain AMK58_05850 c8e916117f6809e0a786a595bd3cfd0e 229 Pfam PF07729 FCD domain 94 212 2.8E-24 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_05850 c8e916117f6809e0a786a595bd3cfd0e 229 SMART SM00345 25 83 3.5E-17 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_05850 c8e916117f6809e0a786a595bd3cfd0e 229 Pfam PF00392 Bacterial regulatory proteins, gntR family 22 83 9.7E-20 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_05850 c8e916117f6809e0a786a595bd3cfd0e 229 SUPERFAMILY SSF46785 17 107 6.45E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_05850 c8e916117f6809e0a786a595bd3cfd0e 229 SUPERFAMILY SSF48008 92 222 1.94E-24 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_05850 c8e916117f6809e0a786a595bd3cfd0e 229 Gene3D G3DSA:1.10.10.10 3 84 2.5E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_05850 c8e916117f6809e0a786a595bd3cfd0e 229 SMART SM00895 93 214 2.6E-16 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_05850 c8e916117f6809e0a786a595bd3cfd0e 229 Gene3D G3DSA:1.20.120.530 86 228 4.5E-31 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_27860 bc8092aa251bd984e439478f16de0580 502 TIGRFAM TIGR00780 ccoN: cytochrome c oxidase, cbb3-type, subunit I 31 485 3.5E-207 T 11-10-2018 IPR004677 Cytochrome c oxidase cbb3-type, subunit I GO:0004129|GO:0045278|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 AMK58_27860 bc8092aa251bd984e439478f16de0580 502 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 32 463 6.4E-110 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_27860 bc8092aa251bd984e439478f16de0580 502 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 224 279 - T 11-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_27860 bc8092aa251bd984e439478f16de0580 502 Gene3D G3DSA:1.20.210.10 21 495 2.1E-184 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_27860 bc8092aa251bd984e439478f16de0580 502 SUPERFAMILY SSF81442 30 483 5.76E-111 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_28975 c58b885c525a5dcc4758560ce4cdb7cd 322 SUPERFAMILY SSF51735 3 315 5.62E-67 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_28975 c58b885c525a5dcc4758560ce4cdb7cd 322 Gene3D G3DSA:3.40.50.720 5 302 8.9E-116 T 11-10-2018 AMK58_28975 c58b885c525a5dcc4758560ce4cdb7cd 322 Pfam PF16363 GDP-mannose 4,6 dehydratase 6 309 2.0E-102 T 11-10-2018 IPR016040 NAD(P)-binding domain AMK58_28975 c58b885c525a5dcc4758560ce4cdb7cd 322 Hamap MF_00955 GDP-mannose 4,6-dehydratase [gmd]. 3 322 47.675 T 11-10-2018 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|Reactome: R-HSA-6787639 AMK58_28975 c58b885c525a5dcc4758560ce4cdb7cd 322 Gene3D G3DSA:3.90.25.10 186 314 8.9E-116 T 11-10-2018 AMK58_09530 65551e8a39e37be75ad5a3c336c38634 477 Gene3D G3DSA:3.30.2290.10 17 231 1.6E-19 T 11-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal AMK58_09530 65551e8a39e37be75ad5a3c336c38634 477 PIRSF PIRSF004919 18 476 5.3E-135 T 11-10-2018 IPR025502 TldD AMK58_09530 65551e8a39e37be75ad5a3c336c38634 477 Pfam PF01523 Putative modulator of DNA gyrase 37 327 7.6E-66 T 11-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 AMK58_09530 65551e8a39e37be75ad5a3c336c38634 477 SUPERFAMILY SSF111283 22 473 9.68E-130 T 11-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 AMK58_04885 b0892a8ab8382e7ff236efb77b11dcef 417 SUPERFAMILY SSF55174 310 415 1.45E-13 T 11-10-2018 AMK58_04885 b0892a8ab8382e7ff236efb77b11dcef 417 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 7 415 6.4E-110 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AMK58_04885 b0892a8ab8382e7ff236efb77b11dcef 417 Hamap MF_02006 Tyrosine--tRNA ligase [tyrS]. 6 416 42.949 T 11-10-2018 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0004831 KEGG: 00970+6.1.1.1 AMK58_04885 b0892a8ab8382e7ff236efb77b11dcef 417 SUPERFAMILY SSF52374 5 326 9.64E-99 T 11-10-2018 AMK58_04885 b0892a8ab8382e7ff236efb77b11dcef 417 Pfam PF00579 tRNA synthetases class I (W and Y) 33 327 2.7E-73 T 11-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMK58_04885 b0892a8ab8382e7ff236efb77b11dcef 417 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 168 183 1.8E-25 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AMK58_04885 b0892a8ab8382e7ff236efb77b11dcef 417 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 222 234 1.8E-25 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AMK58_04885 b0892a8ab8382e7ff236efb77b11dcef 417 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 48 70 1.8E-25 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AMK58_04885 b0892a8ab8382e7ff236efb77b11dcef 417 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 189 211 1.8E-25 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AMK58_04885 b0892a8ab8382e7ff236efb77b11dcef 417 Gene3D G3DSA:3.10.290.10 322 417 9.2E-19 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AMK58_04885 b0892a8ab8382e7ff236efb77b11dcef 417 Gene3D G3DSA:1.10.240.10 229 321 4.0E-30 T 11-10-2018 AMK58_04885 b0892a8ab8382e7ff236efb77b11dcef 417 Gene3D G3DSA:3.40.50.620 1 228 1.9E-86 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_05940 d7114b63c30ea5aa96cc13b73fd2266c 535 Pfam PF10996 Beta-Casp domain 257 372 2.7E-27 T 11-10-2018 IPR022712 Beta-Casp domain AMK58_05940 d7114b63c30ea5aa96cc13b73fd2266c 535 SUPERFAMILY SSF56281 3 449 2.62E-114 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMK58_05940 d7114b63c30ea5aa96cc13b73fd2266c 535 SMART SM00849 15 245 1.1E-22 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMK58_05940 d7114b63c30ea5aa96cc13b73fd2266c 535 Gene3D G3DSA:3.40.50.10890 225 400 8.3E-131 T 11-10-2018 AMK58_05940 d7114b63c30ea5aa96cc13b73fd2266c 535 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 388 446 3.9E-12 T 11-10-2018 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain AMK58_05940 d7114b63c30ea5aa96cc13b73fd2266c 535 Pfam PF00753 Metallo-beta-lactamase superfamily 13 208 2.6E-16 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMK58_05940 d7114b63c30ea5aa96cc13b73fd2266c 535 SMART SM01027 257 374 4.6E-50 T 11-10-2018 IPR022712 Beta-Casp domain AMK58_05940 d7114b63c30ea5aa96cc13b73fd2266c 535 Gene3D G3DSA:3.60.15.10 8 434 8.3E-131 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMK58_19680 77e74f5eab6d8e14a08cc3abe9450b5d 206 Pfam PF14246 AefR-like transcriptional repressor, C-terminal region 150 204 4.9E-16 T 11-10-2018 IPR039536 Transcriptional regulator TetR, C-terminal, Proteobacteria type AMK58_19680 77e74f5eab6d8e14a08cc3abe9450b5d 206 SUPERFAMILY SSF48498 87 197 6.78E-9 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMK58_19680 77e74f5eab6d8e14a08cc3abe9450b5d 206 Gene3D G3DSA:1.10.10.60 10 62 5.5E-20 T 11-10-2018 AMK58_19680 77e74f5eab6d8e14a08cc3abe9450b5d 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 2.2E-11 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_19680 77e74f5eab6d8e14a08cc3abe9450b5d 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 2.2E-11 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_19680 77e74f5eab6d8e14a08cc3abe9450b5d 206 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 62 9.0E-19 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_19680 77e74f5eab6d8e14a08cc3abe9450b5d 206 Gene3D G3DSA:1.10.357.10 68 206 1.2E-37 T 11-10-2018 AMK58_19680 77e74f5eab6d8e14a08cc3abe9450b5d 206 SUPERFAMILY SSF46689 11 70 1.25E-18 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_19680 77e74f5eab6d8e14a08cc3abe9450b5d 206 ProSitePatterns PS01081 TetR-type HTH domain signature. 30 60 - T 11-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMK58_10840 a3cf8f8c7e4ee8ab615450847f84cc4e 223 PIRSF PIRSF006324 5 220 1.4E-55 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMK58_10840 a3cf8f8c7e4ee8ab615450847f84cc4e 223 Pfam PF01810 LysE type translocator 19 217 1.1E-37 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMK58_27065 7430015e7fe5e9e5ea5e33910355da8f 474 SUPERFAMILY SSF53383 76 463 1.24E-74 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_27065 7430015e7fe5e9e5ea5e33910355da8f 474 Gene3D G3DSA:1.10.10.10 12 86 2.4E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_27065 7430015e7fe5e9e5ea5e33910355da8f 474 Pfam PF00392 Bacterial regulatory proteins, gntR family 22 82 6.7E-14 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_27065 7430015e7fe5e9e5ea5e33910355da8f 474 Gene3D G3DSA:3.90.1150.10 118 461 4.3E-67 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_27065 7430015e7fe5e9e5ea5e33910355da8f 474 SMART SM00345 23 82 7.3E-16 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_27065 7430015e7fe5e9e5ea5e33910355da8f 474 Pfam PF00155 Aminotransferase class I and II 131 458 1.9E-23 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMK58_27065 7430015e7fe5e9e5ea5e33910355da8f 474 Gene3D G3DSA:3.40.640.10 145 361 4.3E-67 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_27065 7430015e7fe5e9e5ea5e33910355da8f 474 SUPERFAMILY SSF46785 15 92 3.81E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_29085 691ec40052cb7239bc65ba89f227fa3e 319 SUPERFAMILY SSF51735 7 316 7.19E-94 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_29085 691ec40052cb7239bc65ba89f227fa3e 319 Gene3D G3DSA:3.40.50.720 8 318 8.7E-111 T 11-10-2018 AMK58_29085 691ec40052cb7239bc65ba89f227fa3e 319 Pfam PF16363 GDP-mannose 4,6 dehydratase 12 309 5.1E-55 T 11-10-2018 IPR016040 NAD(P)-binding domain AMK58_21430 2760ef8b32b12566af985757e3b92471 132 SUPERFAMILY SSF55298 9 129 2.67E-35 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMK58_21430 2760ef8b32b12566af985757e3b92471 132 Pfam PF01042 Endoribonuclease L-PSP 13 127 1.2E-29 T 11-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 AMK58_21430 2760ef8b32b12566af985757e3b92471 132 Gene3D G3DSA:3.30.1330.40 1 131 1.8E-41 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMK58_00105 a434bc7e1fb9a531cfce0cb77c72bf2d 332 Pfam PF00579 tRNA synthetases class I (W and Y) 3 270 1.8E-77 T 11-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMK58_00105 a434bc7e1fb9a531cfce0cb77c72bf2d 332 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 140 161 1.5E-26 T 11-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AMK58_00105 a434bc7e1fb9a531cfce0cb77c72bf2d 332 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 194 204 1.5E-26 T 11-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AMK58_00105 a434bc7e1fb9a531cfce0cb77c72bf2d 332 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 14 30 1.5E-26 T 11-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AMK58_00105 a434bc7e1fb9a531cfce0cb77c72bf2d 332 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 64 83 1.5E-26 T 11-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AMK58_00105 a434bc7e1fb9a531cfce0cb77c72bf2d 332 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 1 330 38.906 T 11-10-2018 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2|Reactome: R-HSA-379726 AMK58_00105 a434bc7e1fb9a531cfce0cb77c72bf2d 332 Gene3D G3DSA:3.40.50.620 4 328 1.2E-132 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_00105 a434bc7e1fb9a531cfce0cb77c72bf2d 332 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 3 329 1.0E-96 T 11-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AMK58_00105 a434bc7e1fb9a531cfce0cb77c72bf2d 332 SUPERFAMILY SSF52374 3 329 3.46E-93 T 11-10-2018 AMK58_00105 a434bc7e1fb9a531cfce0cb77c72bf2d 332 Gene3D G3DSA:1.10.240.10 187 299 1.2E-132 T 11-10-2018 AMK58_07355 b8f6c5b491f03fdb03c4f7e1b51508f2 510 Gene3D G3DSA:1.10.860.10 26 189 1.1E-45 T 11-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal AMK58_07355 b8f6c5b491f03fdb03c4f7e1b51508f2 510 Pfam PF03796 DnaB-like helicase C terminal domain 211 498 4.8E-104 T 11-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 AMK58_07355 b8f6c5b491f03fdb03c4f7e1b51508f2 510 SUPERFAMILY SSF52540 209 492 7.54E-49 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_07355 b8f6c5b491f03fdb03c4f7e1b51508f2 510 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 33 501 1.1E-157 T 11-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 AMK58_07355 b8f6c5b491f03fdb03c4f7e1b51508f2 510 Pfam PF00772 DnaB-like helicase N terminal domain 33 134 7.8E-29 T 11-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 AMK58_07355 b8f6c5b491f03fdb03c4f7e1b51508f2 510 Gene3D G3DSA:3.40.50.300 190 501 6.7E-103 T 11-10-2018 AMK58_07355 b8f6c5b491f03fdb03c4f7e1b51508f2 510 SUPERFAMILY SSF48024 31 143 1.96E-33 T 11-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 AMK58_13995 363645823fb0aba2918b99f80fd8471c 442 Pfam PF01145 SPFH domain / Band 7 family 58 250 3.9E-17 T 11-10-2018 IPR001107 Band 7 domain AMK58_13995 363645823fb0aba2918b99f80fd8471c 442 SMART SM00244 53 235 7.1E-4 T 11-10-2018 IPR001107 Band 7 domain AMK58_13995 363645823fb0aba2918b99f80fd8471c 442 SUPERFAMILY SSF117892 89 240 4.58E-8 T 11-10-2018 IPR036013 Band 7/SPFH domain superfamily AMK58_24660 66793081e37539d9d6b9c87d791e3713 298 SMART SM00470 37 124 2.6E-20 T 11-10-2018 IPR003115 ParB/Sulfiredoxin AMK58_24660 66793081e37539d9d6b9c87d791e3713 298 SUPERFAMILY SSF109709 117 210 3.27E-18 T 11-10-2018 AMK58_24660 66793081e37539d9d6b9c87d791e3713 298 Gene3D G3DSA:3.90.1530.30 50 111 9.7E-18 T 11-10-2018 AMK58_24660 66793081e37539d9d6b9c87d791e3713 298 Gene3D G3DSA:1.10.10.2830 113 221 5.7E-18 T 11-10-2018 AMK58_24660 66793081e37539d9d6b9c87d791e3713 298 Pfam PF02195 ParB-like nuclease domain 38 122 1.4E-15 T 11-10-2018 IPR003115 ParB/Sulfiredoxin AMK58_24660 66793081e37539d9d6b9c87d791e3713 298 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 36 182 7.1E-33 T 11-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 AMK58_24660 66793081e37539d9d6b9c87d791e3713 298 SUPERFAMILY SSF110849 36 126 7.67E-20 T 11-10-2018 IPR036086 ParB/Sulfiredoxin superfamily AMK58_12185 584d9495bf576b387995a9c2d986a801 146 SUPERFAMILY SSF88697 10 141 7.45E-28 T 11-10-2018 IPR015947 PUA-like superfamily AMK58_12185 584d9495bf576b387995a9c2d986a801 146 Hamap MF_00771 UPF0310 protein . 7 141 28.352 T 11-10-2018 IPR022996 Uncharacterised protein family UPF0310 AMK58_12185 584d9495bf576b387995a9c2d986a801 146 Pfam PF01878 EVE domain 9 139 4.9E-14 T 11-10-2018 IPR002740 EVE domain AMK58_12185 584d9495bf576b387995a9c2d986a801 146 Gene3D G3DSA:3.10.590.10 6 139 3.4E-26 T 11-10-2018 AMK58_01635 be8c28ce896767d491fdff403021d967 284 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 58 71 - T 11-10-2018 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AMK58_01635 be8c28ce896767d491fdff403021d967 284 Pfam PF00290 Tryptophan synthase alpha chain 18 252 2.0E-94 T 11-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AMK58_01635 be8c28ce896767d491fdff403021d967 284 Gene3D G3DSA:3.20.20.70 9 279 1.7E-98 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_01635 be8c28ce896767d491fdff403021d967 284 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 24 278 35.999 T 11-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AMK58_01635 be8c28ce896767d491fdff403021d967 284 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 18 260 8.8E-79 T 11-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AMK58_01635 be8c28ce896767d491fdff403021d967 284 SUPERFAMILY SSF51366 13 257 1.6E-90 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AMK58_13900 98a2f75f311f2ba06d6cb216ea22b3f9 210 Gene3D G3DSA:3.30.1330.200 31 189 9.3E-49 T 11-10-2018 IPR038592 CheD-like superfamily AMK58_13900 98a2f75f311f2ba06d6cb216ea22b3f9 210 Hamap MF_01440 Chemoreceptor glutamine deamidase CheD [cheD]. 29 182 27.638 T 11-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 AMK58_13900 98a2f75f311f2ba06d6cb216ea22b3f9 210 Pfam PF03975 CheD chemotactic sensory transduction 77 175 8.4E-26 T 11-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 AMK58_13900 98a2f75f311f2ba06d6cb216ea22b3f9 210 SUPERFAMILY SSF64438 33 182 4.03E-47 T 11-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic AMK58_21625 98a2f75f311f2ba06d6cb216ea22b3f9 210 Gene3D G3DSA:3.30.1330.200 31 189 9.3E-49 T 11-10-2018 IPR038592 CheD-like superfamily AMK58_21625 98a2f75f311f2ba06d6cb216ea22b3f9 210 Hamap MF_01440 Chemoreceptor glutamine deamidase CheD [cheD]. 29 182 27.638 T 11-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 AMK58_21625 98a2f75f311f2ba06d6cb216ea22b3f9 210 Pfam PF03975 CheD chemotactic sensory transduction 77 175 8.4E-26 T 11-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 AMK58_21625 98a2f75f311f2ba06d6cb216ea22b3f9 210 SUPERFAMILY SSF64438 33 182 4.03E-47 T 11-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic AMK58_29100 046baf8ced78d4bc01853503f19c35ee 395 Gene3D G3DSA:1.10.443.10 177 379 1.3E-43 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMK58_29100 046baf8ced78d4bc01853503f19c35ee 395 Gene3D G3DSA:1.10.150.130 57 176 1.5E-16 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal AMK58_29100 046baf8ced78d4bc01853503f19c35ee 395 Pfam PF00589 Phage integrase family 202 376 1.2E-14 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMK58_29100 046baf8ced78d4bc01853503f19c35ee 395 SUPERFAMILY SSF47823 54 170 1.1E-19 T 11-10-2018 AMK58_29100 046baf8ced78d4bc01853503f19c35ee 395 SUPERFAMILY SSF56349 175 383 4.12E-38 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMK58_14585 eec02d73178b1c278c6b1dd2367efb99 643 TIGRFAM TIGR01507 hopene_cyclase: squalene-hopene cyclase 16 642 6.3E-232 T 11-10-2018 IPR006400 Squalene hopene cyclase GO:0016866|GO:0019746 KEGG: 00909+4.2.1.129+5.4.99.17|MetaCyc: PWY-6098|MetaCyc: PWY-7072 AMK58_14585 eec02d73178b1c278c6b1dd2367efb99 643 Pfam PF13249 Squalene-hopene cyclase N-terminal domain 26 313 3.2E-117 T 11-10-2018 IPR032697 Squalene cyclase, N-terminal Reactome: R-HSA-191273|Reactome: R-HSA-2426168 AMK58_14585 eec02d73178b1c278c6b1dd2367efb99 643 Gene3D G3DSA:1.50.10.20 47 322 5.1E-224 T 11-10-2018 AMK58_14585 eec02d73178b1c278c6b1dd2367efb99 643 Gene3D G3DSA:1.50.10.20 29 638 5.1E-224 T 11-10-2018 AMK58_14585 eec02d73178b1c278c6b1dd2367efb99 643 Pfam PF13243 Squalene-hopene cyclase C-terminal domain 323 639 1.2E-136 T 11-10-2018 IPR032696 Squalene cyclase, C-terminal Reactome: R-HSA-191273|Reactome: R-HSA-2426168 AMK58_14585 eec02d73178b1c278c6b1dd2367efb99 643 SUPERFAMILY SSF48239 315 639 7.22E-100 T 11-10-2018 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid AMK58_14585 eec02d73178b1c278c6b1dd2367efb99 643 SUPERFAMILY SSF48239 51 318 1.37E-71 T 11-10-2018 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid AMK58_14585 eec02d73178b1c278c6b1dd2367efb99 643 TIGRFAM TIGR01787 squalene_cyclas: squalene/oxidosqualene cyclases 26 639 7.3E-179 T 11-10-2018 IPR018333 Squalene cyclase GO:0016866 Reactome: R-HSA-191273|Reactome: R-HSA-2426168 AMK58_23785 86cbafe5d4e7472bbab9cf6ab380a63a 123 Pfam PF00034 Cytochrome c 25 121 1.6E-9 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_23785 86cbafe5d4e7472bbab9cf6ab380a63a 123 SUPERFAMILY SSF46626 22 121 9.19E-36 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_23785 86cbafe5d4e7472bbab9cf6ab380a63a 123 Gene3D G3DSA:1.10.760.10 13 122 6.2E-46 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_23785 86cbafe5d4e7472bbab9cf6ab380a63a 123 PRINTS PR00604 Class IA and IB cytochrome C signature 113 121 3.8E-24 T 11-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_23785 86cbafe5d4e7472bbab9cf6ab380a63a 123 PRINTS PR00604 Class IA and IB cytochrome C signature 77 93 3.8E-24 T 11-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_23785 86cbafe5d4e7472bbab9cf6ab380a63a 123 PRINTS PR00604 Class IA and IB cytochrome C signature 63 73 3.8E-24 T 11-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_23785 86cbafe5d4e7472bbab9cf6ab380a63a 123 PRINTS PR00604 Class IA and IB cytochrome C signature 47 62 3.8E-24 T 11-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_23785 86cbafe5d4e7472bbab9cf6ab380a63a 123 PRINTS PR00604 Class IA and IB cytochrome C signature 96 106 3.8E-24 T 11-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_23785 86cbafe5d4e7472bbab9cf6ab380a63a 123 PRINTS PR00604 Class IA and IB cytochrome C signature 34 41 3.8E-24 T 11-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_06525 977c896d09770d4e2e73380b8b7b919e 563 Pfam PF00664 ABC transporter transmembrane region 15 269 9.7E-8 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMK58_06525 977c896d09770d4e2e73380b8b7b919e 563 Pfam PF00005 ABC transporter 336 484 3.8E-18 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_06525 977c896d09770d4e2e73380b8b7b919e 563 SUPERFAMILY SSF52540 310 535 7.6E-44 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_06525 977c896d09770d4e2e73380b8b7b919e 563 Gene3D G3DSA:3.40.50.300 310 547 9.8E-53 T 11-10-2018 AMK58_06525 977c896d09770d4e2e73380b8b7b919e 563 Gene3D G3DSA:1.20.1560.10 5 303 1.4E-28 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMK58_06525 977c896d09770d4e2e73380b8b7b919e 563 SMART SM00382 345 531 4.7E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_06525 977c896d09770d4e2e73380b8b7b919e 563 SUPERFAMILY SSF90123 8 308 7.32E-35 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMK58_04870 7c64d22e54ed279b7ae3fb31300ab303 160 SUPERFAMILY SSF52833 9 160 4.05E-54 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_04870 7c64d22e54ed279b7ae3fb31300ab303 160 PIRSF PIRSF000239 4 160 4.6E-26 T 11-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMK58_04870 7c64d22e54ed279b7ae3fb31300ab303 160 Pfam PF00578 AhpC/TSA family 12 139 2.6E-39 T 11-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMK58_04870 7c64d22e54ed279b7ae3fb31300ab303 160 Gene3D G3DSA:3.40.30.10 7 159 2.9E-51 T 11-10-2018 AMK58_14515 d0a0c15fa8ef9f022eac548eed52eeab 387 PIRSF PIRSF016578 9 196 2.1E-9 T 11-10-2018 AMK58_14515 d0a0c15fa8ef9f022eac548eed52eeab 387 PIRSF PIRSF016578 234 386 2.8E-5 T 11-10-2018 AMK58_14515 d0a0c15fa8ef9f022eac548eed52eeab 387 Gene3D G3DSA:1.20.140.10 237 381 3.8E-37 T 11-10-2018 AMK58_14515 d0a0c15fa8ef9f022eac548eed52eeab 387 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 232 370 1.0E-33 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMK58_14515 d0a0c15fa8ef9f022eac548eed52eeab 387 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 339 358 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMK58_14515 d0a0c15fa8ef9f022eac548eed52eeab 387 SUPERFAMILY SSF56645 8 244 1.26E-62 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMK58_14515 d0a0c15fa8ef9f022eac548eed52eeab 387 Gene3D G3DSA:2.40.110.10 121 236 6.1E-35 T 11-10-2018 AMK58_14515 d0a0c15fa8ef9f022eac548eed52eeab 387 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 219 9.0E-22 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMK58_14515 d0a0c15fa8ef9f022eac548eed52eeab 387 Gene3D G3DSA:1.10.540.10 4 117 3.3E-30 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMK58_14515 d0a0c15fa8ef9f022eac548eed52eeab 387 SUPERFAMILY SSF47203 230 384 9.34E-44 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMK58_14515 d0a0c15fa8ef9f022eac548eed52eeab 387 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 11 116 3.3E-26 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMK58_05180 6d0c7264f26cb95fa4688fbf551e81c7 62 Pfam PF06698 Protein of unknown function (DUF1192) 4 59 5.8E-22 T 11-10-2018 IPR009579 Protein of unknown function DUF1192 AMK58_26650 23205d13902285697d8ad9d6ab600bd1 429 SUPERFAMILY SSF51338 1 380 4.86E-16 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMK58_26650 23205d13902285697d8ad9d6ab600bd1 429 Pfam PF07969 Amidohydrolase family 40 383 1.4E-47 T 11-10-2018 IPR013108 Amidohydrolase 3 AMK58_26650 23205d13902285697d8ad9d6ab600bd1 429 SUPERFAMILY SSF51556 52 371 3.84E-105 T 11-10-2018 IPR032466 Metal-dependent hydrolase AMK58_26650 23205d13902285697d8ad9d6ab600bd1 429 Gene3D G3DSA:3.20.20.140 53 360 3.2E-156 T 11-10-2018 AMK58_26650 23205d13902285697d8ad9d6ab600bd1 429 Gene3D G3DSA:2.30.40.10 9 403 3.2E-156 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMK58_20630 339635919afe56d385a235f5fca9a8fb 346 SUPERFAMILY SSF52540 3 245 2.53E-87 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_20630 339635919afe56d385a235f5fca9a8fb 346 Pfam PF00005 ABC transporter 18 164 7.1E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_20630 339635919afe56d385a235f5fca9a8fb 346 SUPERFAMILY SSF50331 240 342 3.61E-13 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMK58_20630 339635919afe56d385a235f5fca9a8fb 346 TIGRFAM TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein 3 242 4.8E-121 T 11-10-2018 IPR005666 Sulphate transport system permease protein 1 GO:0008272|GO:0015419|GO:0016020|GO:0043190 KEGG: 00920+3.6.3.25 AMK58_20630 339635919afe56d385a235f5fca9a8fb 346 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_20630 339635919afe56d385a235f5fca9a8fb 346 Pfam PF12857 TOBE-like domain 289 332 3.6E-8 T 11-10-2018 IPR024765 TOBE-like domain KEGG: 00920+3.6.3.25 AMK58_20630 339635919afe56d385a235f5fca9a8fb 346 Gene3D G3DSA:3.40.50.300 1 257 2.6E-78 T 11-10-2018 AMK58_20630 339635919afe56d385a235f5fca9a8fb 346 SMART SM00382 27 214 2.8E-20 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_28900 b6cbc46cb677cd3c69b24b4347b4ea8b 191 Hamap MF_00067 Phosphoheptose isomerase [gmhA]. 4 190 37.847 T 11-10-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 AMK58_28900 b6cbc46cb677cd3c69b24b4347b4ea8b 191 TIGRFAM TIGR00441 gmhA: phosphoheptose isomerase 36 187 2.3E-65 T 11-10-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 AMK58_28900 b6cbc46cb677cd3c69b24b4347b4ea8b 191 Gene3D G3DSA:3.40.50.10490 4 190 8.4E-76 T 11-10-2018 AMK58_28900 b6cbc46cb677cd3c69b24b4347b4ea8b 191 SUPERFAMILY SSF53697 7 188 7.31E-55 T 11-10-2018 AMK58_28900 b6cbc46cb677cd3c69b24b4347b4ea8b 191 Pfam PF13580 SIS domain 23 147 1.1E-32 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AMK58_11795 1602097db96199307725be827f1d1c3a 466 PIRSF PIRSF000350 1 462 1.2E-84 T 11-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 AMK58_11795 1602097db96199307725be827f1d1c3a 466 SUPERFAMILY SSF51905 1 322 2.24E-65 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_11795 1602097db96199307725be827f1d1c3a 466 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 328 8.4E-74 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMK58_11795 1602097db96199307725be827f1d1c3a 466 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 6 466 1.9E-175 T 11-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 AMK58_11795 1602097db96199307725be827f1d1c3a 466 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 347 455 4.6E-41 T 11-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMK58_11795 1602097db96199307725be827f1d1c3a 466 Gene3D G3DSA:3.50.50.60 148 271 1.0E-120 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_11795 1602097db96199307725be827f1d1c3a 466 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 41 51 - T 11-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 AMK58_11795 1602097db96199307725be827f1d1c3a 466 Gene3D G3DSA:3.50.50.60 7 328 1.0E-120 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_11795 1602097db96199307725be827f1d1c3a 466 SUPERFAMILY SSF55424 344 465 1.6E-43 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMK58_11795 1602097db96199307725be827f1d1c3a 466 Gene3D G3DSA:3.30.390.30 346 466 6.2E-47 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMK58_11795 1602097db96199307725be827f1d1c3a 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 136 154 8.0E-40 T 11-10-2018 AMK58_11795 1602097db96199307725be827f1d1c3a 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 175 193 8.0E-40 T 11-10-2018 AMK58_11795 1602097db96199307725be827f1d1c3a 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 8.0E-40 T 11-10-2018 AMK58_11795 1602097db96199307725be827f1d1c3a 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 293 315 8.0E-40 T 11-10-2018 AMK58_11795 1602097db96199307725be827f1d1c3a 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 264 280 8.0E-40 T 11-10-2018 AMK58_11795 1602097db96199307725be827f1d1c3a 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 343 364 4.0E-79 T 11-10-2018 AMK58_11795 1602097db96199307725be827f1d1c3a 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 408 423 4.0E-79 T 11-10-2018 AMK58_11795 1602097db96199307725be827f1d1c3a 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 175 200 4.0E-79 T 11-10-2018 AMK58_11795 1602097db96199307725be827f1d1c3a 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 308 315 4.0E-79 T 11-10-2018 AMK58_11795 1602097db96199307725be827f1d1c3a 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 139 148 4.0E-79 T 11-10-2018 AMK58_11795 1602097db96199307725be827f1d1c3a 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 265 279 4.0E-79 T 11-10-2018 AMK58_11795 1602097db96199307725be827f1d1c3a 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 430 450 4.0E-79 T 11-10-2018 AMK58_11795 1602097db96199307725be827f1d1c3a 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 40 55 4.0E-79 T 11-10-2018 AMK58_11795 1602097db96199307725be827f1d1c3a 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 4.0E-79 T 11-10-2018 AMK58_23805 78cd79043d4f2842747c6df487171fc8 690 Pfam PF00072 Response regulator receiver domain 20 132 4.6E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_23805 78cd79043d4f2842747c6df487171fc8 690 Pfam PF00072 Response regulator receiver domain 561 672 1.6E-14 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_23805 78cd79043d4f2842747c6df487171fc8 690 Gene3D G3DSA:3.30.450.20 169 293 9.9E-24 T 11-10-2018 AMK58_23805 78cd79043d4f2842747c6df487171fc8 690 Gene3D G3DSA:3.40.50.2300 557 679 3.1E-24 T 11-10-2018 AMK58_23805 78cd79043d4f2842747c6df487171fc8 690 SUPERFAMILY SSF55874 367 536 5.63E-40 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_23805 78cd79043d4f2842747c6df487171fc8 690 SUPERFAMILY SSF52172 17 170 1.57E-36 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_23805 78cd79043d4f2842747c6df487171fc8 690 SUPERFAMILY SSF52172 561 677 8.25E-25 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_23805 78cd79043d4f2842747c6df487171fc8 690 Pfam PF08447 PAS fold 204 289 3.2E-15 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 AMK58_23805 78cd79043d4f2842747c6df487171fc8 690 Gene3D G3DSA:3.30.565.10 377 545 3.9E-45 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_23805 78cd79043d4f2842747c6df487171fc8 690 SMART SM00388 310 376 2.2E-7 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_23805 78cd79043d4f2842747c6df487171fc8 690 Gene3D G3DSA:1.10.287.130 302 375 9.7E-18 T 11-10-2018 AMK58_23805 78cd79043d4f2842747c6df487171fc8 690 SMART SM00448 559 672 1.0E-17 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_23805 78cd79043d4f2842747c6df487171fc8 690 SMART SM00448 18 132 1.6E-30 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_23805 78cd79043d4f2842747c6df487171fc8 690 SUPERFAMILY SSF55785 165 293 4.01E-17 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_23805 78cd79043d4f2842747c6df487171fc8 690 Pfam PF00512 His Kinase A (phospho-acceptor) domain 312 374 4.3E-8 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_23805 78cd79043d4f2842747c6df487171fc8 690 PRINTS PR00344 Bacterial sensor protein C-terminal signature 483 493 3.0E-18 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_23805 78cd79043d4f2842747c6df487171fc8 690 PRINTS PR00344 Bacterial sensor protein C-terminal signature 465 479 3.0E-18 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_23805 78cd79043d4f2842747c6df487171fc8 690 PRINTS PR00344 Bacterial sensor protein C-terminal signature 520 533 3.0E-18 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_23805 78cd79043d4f2842747c6df487171fc8 690 PRINTS PR00344 Bacterial sensor protein C-terminal signature 496 514 3.0E-18 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_23805 78cd79043d4f2842747c6df487171fc8 690 SUPERFAMILY SSF47384 303 373 5.1E-10 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_23805 78cd79043d4f2842747c6df487171fc8 690 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 419 533 4.2E-20 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_23805 78cd79043d4f2842747c6df487171fc8 690 SMART SM00086 253 295 1.9E-4 T 11-10-2018 IPR001610 PAC motif AMK58_23805 78cd79043d4f2842747c6df487171fc8 690 SMART SM00387 417 536 2.0E-28 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_23805 78cd79043d4f2842747c6df487171fc8 690 Gene3D G3DSA:3.40.50.2300 16 164 5.8E-34 T 11-10-2018 AMK58_22365 fe2baa7bd18eb2012415541ee8f962c3 299 Pfam PF01913 Formylmethanofuran-tetrahydromethanopterin formyltransferase 1 143 1.0E-62 T 11-10-2018 IPR022667 Formylmethanofuran: tetrahydromethanopterin formyltransferase Ftr, N-terminal GO:0006730|GO:0016740 AMK58_22365 fe2baa7bd18eb2012415541ee8f962c3 299 PIRSF PIRSF006414 1 299 8.1E-116 T 11-10-2018 IPR014053 Formylmethanofuran: tetrahydromethanopterin formyltransferase Ftr GO:0006730|GO:0030270 AMK58_22365 fe2baa7bd18eb2012415541ee8f962c3 299 SUPERFAMILY SSF55112 1 144 6.93E-61 T 11-10-2018 IPR023447 Formylmethanofuran: tetrahydromethanopterin formyltransferase Ftr, ferredoxin-like superfamily AMK58_22365 fe2baa7bd18eb2012415541ee8f962c3 299 Pfam PF02741 FTR, proximal lobe 146 297 2.4E-60 T 11-10-2018 IPR002770 Formylmethanofuran: tetrahydromethanopterin formyltransferase Ftr, C-terminal GO:0006730|GO:0016740 AMK58_22365 fe2baa7bd18eb2012415541ee8f962c3 299 Gene3D G3DSA:3.30.70.520 17 161 9.8E-120 T 11-10-2018 IPR023447 Formylmethanofuran: tetrahydromethanopterin formyltransferase Ftr, ferredoxin-like superfamily AMK58_22365 fe2baa7bd18eb2012415541ee8f962c3 299 Hamap MF_00579 Formylmethanofuran--tetrahydromethanopterin formyltransferase [ftr]. 1 298 45.887 T 11-10-2018 IPR014053 Formylmethanofuran: tetrahydromethanopterin formyltransferase Ftr GO:0006730|GO:0030270 AMK58_22365 fe2baa7bd18eb2012415541ee8f962c3 299 Gene3D G3DSA:3.30.70.520 3 296 9.8E-120 T 11-10-2018 IPR023447 Formylmethanofuran: tetrahydromethanopterin formyltransferase Ftr, ferredoxin-like superfamily AMK58_22365 fe2baa7bd18eb2012415541ee8f962c3 299 SUPERFAMILY SSF55112 145 298 4.45E-55 T 11-10-2018 IPR023447 Formylmethanofuran: tetrahydromethanopterin formyltransferase Ftr, ferredoxin-like superfamily AMK58_22365 fe2baa7bd18eb2012415541ee8f962c3 299 TIGRFAM TIGR03119 one_C_fhcD: formylmethanofuran--tetrahydromethanopterin N-formyltransferase 8 297 5.5E-124 T 11-10-2018 IPR014053 Formylmethanofuran: tetrahydromethanopterin formyltransferase Ftr GO:0006730|GO:0030270 AMK58_15490 1adf7b2a7d5eebe13f64b228ebb30f68 254 SUPERFAMILY SSF81496 219 253 1.96E-6 T 11-10-2018 IPR021157 Cytochrome c1, transmembrane anchor, C-terminal Reactome: R-HSA-1268020|Reactome: R-HSA-611105 AMK58_15490 1adf7b2a7d5eebe13f64b228ebb30f68 254 PRINTS PR00603 Cytochrome C1 signature 52 71 3.5E-64 T 11-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 AMK58_15490 1adf7b2a7d5eebe13f64b228ebb30f68 254 PRINTS PR00603 Cytochrome C1 signature 130 154 3.5E-64 T 11-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 AMK58_15490 1adf7b2a7d5eebe13f64b228ebb30f68 254 PRINTS PR00603 Cytochrome C1 signature 180 199 3.5E-64 T 11-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 AMK58_15490 1adf7b2a7d5eebe13f64b228ebb30f68 254 PRINTS PR00603 Cytochrome C1 signature 32 51 3.5E-64 T 11-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 AMK58_15490 1adf7b2a7d5eebe13f64b228ebb30f68 254 PRINTS PR00603 Cytochrome C1 signature 169 180 3.5E-64 T 11-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 AMK58_15490 1adf7b2a7d5eebe13f64b228ebb30f68 254 PRINTS PR00603 Cytochrome C1 signature 97 117 3.5E-64 T 11-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 AMK58_15490 1adf7b2a7d5eebe13f64b228ebb30f68 254 PRINTS PR00603 Cytochrome C1 signature 200 219 3.5E-64 T 11-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 AMK58_15490 1adf7b2a7d5eebe13f64b228ebb30f68 254 PRINTS PR00603 Cytochrome C1 signature 219 234 3.5E-64 T 11-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 AMK58_15490 1adf7b2a7d5eebe13f64b228ebb30f68 254 Gene3D G3DSA:1.10.760.10 23 219 1.8E-84 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_15490 1adf7b2a7d5eebe13f64b228ebb30f68 254 Gene3D G3DSA:1.20.5.100 220 254 1.2E-7 T 11-10-2018 AMK58_15490 1adf7b2a7d5eebe13f64b228ebb30f68 254 Pfam PF02167 Cytochrome C1 family 34 252 3.0E-92 T 11-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 AMK58_15490 1adf7b2a7d5eebe13f64b228ebb30f68 254 SUPERFAMILY SSF46626 25 218 1.25E-69 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_15360 846434b903a463eec89e6db469d6f7ec 461 Pfam PF01420 Type I restriction modification DNA specificity domain 21 190 2.5E-7 T 11-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 AMK58_15360 846434b903a463eec89e6db469d6f7ec 461 Gene3D G3DSA:1.10.287.1120 170 440 1.9E-71 T 11-10-2018 AMK58_15360 846434b903a463eec89e6db469d6f7ec 461 SUPERFAMILY SSF116734 6 222 2.62E-39 T 11-10-2018 AMK58_15360 846434b903a463eec89e6db469d6f7ec 461 SUPERFAMILY SSF116734 222 446 8.67E-33 T 11-10-2018 AMK58_15360 846434b903a463eec89e6db469d6f7ec 461 Gene3D G3DSA:3.90.220.20 18 444 1.9E-71 T 11-10-2018 AMK58_15360 846434b903a463eec89e6db469d6f7ec 461 Gene3D G3DSA:3.90.220.20 242 393 1.9E-71 T 11-10-2018 AMK58_03105 5e127db93ccd0326b8febcdc2f9a1654 214 SUPERFAMILY SSF48452 37 133 1.59E-8 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_03105 5e127db93ccd0326b8febcdc2f9a1654 214 Gene3D G3DSA:1.25.40.10 31 148 3.2E-7 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_08290 614086482d4ed32e504c308c541eb1d9 190 Gene3D G3DSA:1.10.940.10 23 177 1.2E-33 T 11-10-2018 IPR035926 NusB-like superfamily AMK58_08290 614086482d4ed32e504c308c541eb1d9 190 SUPERFAMILY SSF48013 28 175 2.22E-27 T 11-10-2018 IPR035926 NusB-like superfamily AMK58_08290 614086482d4ed32e504c308c541eb1d9 190 Hamap MF_00073 Transcription antitermination protein NusB [nusB]. 27 173 18.358 T 11-10-2018 IPR011605 NusB antitermination factor GO:0006353 AMK58_08290 614086482d4ed32e504c308c541eb1d9 190 Pfam PF01029 NusB family 31 170 2.1E-25 T 11-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 AMK58_08290 614086482d4ed32e504c308c541eb1d9 190 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 29 171 1.0E-31 T 11-10-2018 IPR011605 NusB antitermination factor GO:0006353 AMK58_00595 44d4a5e6b67c09a554db22debf778ad3 265 SUPERFAMILY SSF55347 126 235 3.92E-33 T 11-10-2018 AMK58_00595 44d4a5e6b67c09a554db22debf778ad3 265 SUPERFAMILY SSF51735 1 265 1.19E-45 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_00595 44d4a5e6b67c09a554db22debf778ad3 265 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 149 166 - T 11-10-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMK58_00595 44d4a5e6b67c09a554db22debf778ad3 265 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 1 264 32.104 T 11-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMK58_00595 44d4a5e6b67c09a554db22debf778ad3 265 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 127 263 3.8E-41 T 11-10-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMK58_00595 44d4a5e6b67c09a554db22debf778ad3 265 Gene3D G3DSA:3.30.360.10 126 233 1.1E-93 T 11-10-2018 AMK58_00595 44d4a5e6b67c09a554db22debf778ad3 265 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 1 124 5.1E-33 T 11-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMK58_00595 44d4a5e6b67c09a554db22debf778ad3 265 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 1 264 7.6E-80 T 11-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMK58_00595 44d4a5e6b67c09a554db22debf778ad3 265 PIRSF PIRSF000161 1 265 4.6E-80 T 11-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMK58_00595 44d4a5e6b67c09a554db22debf778ad3 265 Gene3D G3DSA:3.40.50.720 4 263 1.1E-93 T 11-10-2018 AMK58_06770 0a0fa3624d8dcd6f10d32f7cc0bc6bbf 435 SUPERFAMILY SSF51735 9 147 1.95E-31 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_06770 0a0fa3624d8dcd6f10d32f7cc0bc6bbf 435 Pfam PF00742 Homoserine dehydrogenase 144 322 4.4E-65 T 11-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 AMK58_06770 0a0fa3624d8dcd6f10d32f7cc0bc6bbf 435 PIRSF PIRSF000098 7 435 2.3E-159 T 11-10-2018 IPR016204 Homoserine dehydrogenase GO:0004412|GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 AMK58_06770 0a0fa3624d8dcd6f10d32f7cc0bc6bbf 435 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 190 212 - T 11-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 AMK58_06770 0a0fa3624d8dcd6f10d32f7cc0bc6bbf 435 Gene3D G3DSA:3.30.360.10 143 349 2.2E-156 T 11-10-2018 AMK58_06770 0a0fa3624d8dcd6f10d32f7cc0bc6bbf 435 SUPERFAMILY SSF55021 354 423 5.99E-10 T 11-10-2018 AMK58_06770 0a0fa3624d8dcd6f10d32f7cc0bc6bbf 435 SUPERFAMILY SSF55347 144 309 9.15E-53 T 11-10-2018 AMK58_06770 0a0fa3624d8dcd6f10d32f7cc0bc6bbf 435 Gene3D G3DSA:3.30.70.260 350 423 2.2E-156 T 11-10-2018 AMK58_06770 0a0fa3624d8dcd6f10d32f7cc0bc6bbf 435 Pfam PF01842 ACT domain 355 418 3.4E-7 T 11-10-2018 IPR002912 ACT domain AMK58_06770 0a0fa3624d8dcd6f10d32f7cc0bc6bbf 435 Gene3D G3DSA:3.40.50.720 10 344 2.2E-156 T 11-10-2018 AMK58_06770 0a0fa3624d8dcd6f10d32f7cc0bc6bbf 435 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 16 135 1.2E-17 T 11-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 AMK58_09755 8f7d67fb2ce5006af2145cba7d103d8f 250 PRINTS PR00839 V8 serine protease family signature 53 70 3.1E-10 T 11-10-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 AMK58_09755 8f7d67fb2ce5006af2145cba7d103d8f 250 PRINTS PR00839 V8 serine protease family signature 147 160 3.1E-10 T 11-10-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 AMK58_09755 8f7d67fb2ce5006af2145cba7d103d8f 250 PRINTS PR00839 V8 serine protease family signature 184 200 3.1E-10 T 11-10-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 AMK58_09755 8f7d67fb2ce5006af2145cba7d103d8f 250 PRINTS PR00839 V8 serine protease family signature 28 45 3.1E-10 T 11-10-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 AMK58_09755 8f7d67fb2ce5006af2145cba7d103d8f 250 Gene3D G3DSA:2.40.10.10 23 201 6.2E-23 T 11-10-2018 AMK58_09755 8f7d67fb2ce5006af2145cba7d103d8f 250 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 64 69 - T 11-10-2018 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 AMK58_09755 8f7d67fb2ce5006af2145cba7d103d8f 250 SUPERFAMILY SSF50494 8 236 3.03E-26 T 11-10-2018 IPR009003 Peptidase S1, PA clan AMK58_09755 8f7d67fb2ce5006af2145cba7d103d8f 250 Gene3D G3DSA:2.40.10.10 38 138 6.2E-23 T 11-10-2018 AMK58_09755 8f7d67fb2ce5006af2145cba7d103d8f 250 Pfam PF13365 Trypsin-like peptidase domain 53 200 1.3E-10 T 11-10-2018 AMK58_25730 99e59531865b8cca469620e312bee87c 512 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 21 437 3.1E-132 T 11-10-2018 IPR002823 Protein of unknown function DUF112, transmembrane AMK58_08665 dc33b298cbc36b1b402fe3c1b98515c6 608 Pfam PF01380 SIS domain 288 415 1.2E-30 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AMK58_08665 dc33b298cbc36b1b402fe3c1b98515c6 608 Pfam PF01380 SIS domain 461 590 6.0E-23 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AMK58_08665 dc33b298cbc36b1b402fe3c1b98515c6 608 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 608 39.493 T 11-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 AMK58_08665 dc33b298cbc36b1b402fe3c1b98515c6 608 SUPERFAMILY SSF53697 246 608 7.21E-112 T 11-10-2018 AMK58_08665 dc33b298cbc36b1b402fe3c1b98515c6 608 Gene3D G3DSA:3.40.50.10490 248 607 3.1E-144 T 11-10-2018 AMK58_08665 dc33b298cbc36b1b402fe3c1b98515c6 608 SUPERFAMILY SSF56235 2 234 2.92E-71 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMK58_08665 dc33b298cbc36b1b402fe3c1b98515c6 608 Pfam PF13522 Glutamine amidotransferase domain 62 193 1.6E-23 T 11-10-2018 AMK58_08665 dc33b298cbc36b1b402fe3c1b98515c6 608 Gene3D G3DSA:3.40.50.10490 445 593 3.1E-144 T 11-10-2018 AMK58_08665 dc33b298cbc36b1b402fe3c1b98515c6 608 Gene3D G3DSA:3.60.20.10 2 240 1.3E-71 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMK58_08665 dc33b298cbc36b1b402fe3c1b98515c6 608 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 608 3.6E-244 T 11-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 AMK58_02525 200b36f3db3de58e44894104c9908c26 286 Hamap MF_01639 Pyridoxal kinase PdxY [pdxY]. 1 285 51.84 T 11-10-2018 IPR023685 Pyridoxal kinase PdxY GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282 AMK58_02525 200b36f3db3de58e44894104c9908c26 286 Pfam PF08543 Phosphomethylpyrimidine kinase 92 260 1.1E-15 T 11-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 AMK58_02525 200b36f3db3de58e44894104c9908c26 286 TIGRFAM TIGR00687 pyridox_kin: pyridoxal kinase 1 285 3.5E-112 T 11-10-2018 IPR004625 Pyridoxine kinase GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-6798695|Reactome: R-HSA-964975 AMK58_02525 200b36f3db3de58e44894104c9908c26 286 SUPERFAMILY SSF53613 1 273 2.18E-73 T 11-10-2018 IPR029056 Ribokinase-like AMK58_02525 200b36f3db3de58e44894104c9908c26 286 Gene3D G3DSA:3.40.1190.20 1 286 5.3E-96 T 11-10-2018 IPR029056 Ribokinase-like AMK58_18740 d55cd70d3a89b16188bcb3c4ba9188e0 263 SUPERFAMILY SSF46785 13 108 1.03E-24 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_18740 d55cd70d3a89b16188bcb3c4ba9188e0 263 PIRSF PIRSF005763 1 263 2.6E-95 T 11-10-2018 IPR016462 Molybdate-dependent transcriptional regulator ModE GO:0006355|GO:0015689|GO:0030151 AMK58_18740 d55cd70d3a89b16188bcb3c4ba9188e0 263 Pfam PF03459 TOBE domain 125 188 3.1E-17 T 11-10-2018 IPR005116 Transport-associated OB, type 1 AMK58_18740 d55cd70d3a89b16188bcb3c4ba9188e0 263 Pfam PF03459 TOBE domain 197 259 1.9E-16 T 11-10-2018 IPR005116 Transport-associated OB, type 1 AMK58_18740 d55cd70d3a89b16188bcb3c4ba9188e0 263 TIGRFAM TIGR00637 ModE_repress: ModE molybdate transport repressor domain 17 108 1.6E-31 T 11-10-2018 IPR003725 Molybdenum-binding protein ModE, N-terminal AMK58_18740 d55cd70d3a89b16188bcb3c4ba9188e0 263 Gene3D G3DSA:1.10.10.10 1 110 1.3E-31 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_18740 d55cd70d3a89b16188bcb3c4ba9188e0 263 SUPERFAMILY SSF50331 123 191 3.4E-21 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMK58_18740 d55cd70d3a89b16188bcb3c4ba9188e0 263 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 123 190 2.6E-23 T 11-10-2018 IPR004606 Molybdenum-pterin binding GO:0015689 AMK58_18740 d55cd70d3a89b16188bcb3c4ba9188e0 263 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 196 262 5.3E-20 T 11-10-2018 IPR004606 Molybdenum-pterin binding GO:0015689 AMK58_18740 d55cd70d3a89b16188bcb3c4ba9188e0 263 SUPERFAMILY SSF50331 196 263 6.59E-18 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMK58_18740 d55cd70d3a89b16188bcb3c4ba9188e0 263 Gene3D G3DSA:2.40.50.100 123 189 3.5E-26 T 11-10-2018 AMK58_18740 d55cd70d3a89b16188bcb3c4ba9188e0 263 Gene3D G3DSA:2.40.50.100 193 263 3.3E-23 T 11-10-2018 AMK58_18740 d55cd70d3a89b16188bcb3c4ba9188e0 263 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 20 82 3.0E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_13440 7147c0dc4beabfca4e27439b9aa88f42 181 SMART SM00382 1 134 0.0018 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_13440 7147c0dc4beabfca4e27439b9aa88f42 181 Gene3D G3DSA:3.40.50.300 2 146 1.8E-37 T 11-10-2018 AMK58_13440 7147c0dc4beabfca4e27439b9aa88f42 181 Pfam PF01695 IstB-like ATP binding protein 8 131 4.9E-43 T 11-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 AMK58_13440 7147c0dc4beabfca4e27439b9aa88f42 181 SUPERFAMILY SSF52540 8 124 1.47E-20 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_13600 20749fdf6a748e2c0cf47f139d249a2b 376 Pfam PF00196 Bacterial regulatory proteins, luxR family 276 328 1.2E-5 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_13600 20749fdf6a748e2c0cf47f139d249a2b 376 Gene3D G3DSA:1.10.10.10 266 333 5.1E-8 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_13600 20749fdf6a748e2c0cf47f139d249a2b 376 ProSitePatterns PS00622 LuxR-type HTH domain signature. 290 317 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_13600 20749fdf6a748e2c0cf47f139d249a2b 376 SUPERFAMILY SSF46894 269 332 2.99E-9 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMK58_13600 20749fdf6a748e2c0cf47f139d249a2b 376 SMART SM00421 273 330 4.0E-4 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_07755 dd42349f10e3c4b773cd8748f250d7df 652 Gene3D G3DSA:1.10.287.950 352 652 5.7E-51 T 11-10-2018 AMK58_07755 dd42349f10e3c4b773cd8748f250d7df 652 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 410 439 2.1E-17 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_07755 dd42349f10e3c4b773cd8748f250d7df 652 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 520 549 2.1E-17 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_07755 dd42349f10e3c4b773cd8748f250d7df 652 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 491 518 2.1E-17 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_07755 dd42349f10e3c4b773cd8748f250d7df 652 Gene3D G3DSA:1.10.8.500 303 351 5.8E-18 T 11-10-2018 AMK58_07755 dd42349f10e3c4b773cd8748f250d7df 652 SMART SM00304 303 356 3.2E-11 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_07755 dd42349f10e3c4b773cd8748f250d7df 652 SMART SM00283 393 647 2.9E-40 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_07755 dd42349f10e3c4b773cd8748f250d7df 652 SUPERFAMILY SSF58104 330 646 7.06E-57 T 11-10-2018 AMK58_07755 dd42349f10e3c4b773cd8748f250d7df 652 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 470 623 4.5E-31 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_07755 dd42349f10e3c4b773cd8748f250d7df 652 Pfam PF00672 HAMP domain 303 353 9.3E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_07755 dd42349f10e3c4b773cd8748f250d7df 652 SMART SM01358 40 274 4.7E-8 T 11-10-2018 IPR032255 Helical bimodular sensor domain AMK58_05110 e24882211899ff5c89fbc4a999b2d2fe 571 SMART SM00052 310 551 1.6E-58 T 11-10-2018 IPR001633 EAL domain AMK58_05110 e24882211899ff5c89fbc4a999b2d2fe 571 Pfam PF00563 EAL domain 317 546 1.4E-56 T 11-10-2018 IPR001633 EAL domain AMK58_05110 e24882211899ff5c89fbc4a999b2d2fe 571 Gene3D G3DSA:3.30.450.20 34 134 8.9E-6 T 11-10-2018 AMK58_05110 e24882211899ff5c89fbc4a999b2d2fe 571 SUPERFAMILY SSF55785 25 119 2.09E-8 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_05110 e24882211899ff5c89fbc4a999b2d2fe 571 Gene3D G3DSA:3.20.20.450 315 563 3.8E-65 T 11-10-2018 IPR035919 EAL domain superfamily AMK58_05110 e24882211899ff5c89fbc4a999b2d2fe 571 SUPERFAMILY SSF141868 316 547 1.57E-62 T 11-10-2018 IPR035919 EAL domain superfamily AMK58_05575 533499ce146717019dd139b2e0539406 511 SMART SM00382 32 220 7.7E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_05575 533499ce146717019dd139b2e0539406 511 SMART SM00382 285 485 0.23 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_05575 533499ce146717019dd139b2e0539406 511 ProSitePatterns PS00211 ABC transporters family signature. 409 423 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_05575 533499ce146717019dd139b2e0539406 511 Pfam PF00005 ABC transporter 277 436 4.0E-16 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_05575 533499ce146717019dd139b2e0539406 511 Gene3D G3DSA:3.40.50.300 1 245 2.5E-58 T 11-10-2018 AMK58_05575 533499ce146717019dd139b2e0539406 511 SUPERFAMILY SSF52540 243 495 5.91E-42 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_05575 533499ce146717019dd139b2e0539406 511 SUPERFAMILY SSF52540 6 225 2.93E-57 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_05575 533499ce146717019dd139b2e0539406 511 Pfam PF00005 ABC transporter 25 171 3.5E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_05575 533499ce146717019dd139b2e0539406 511 Gene3D G3DSA:3.40.50.300 254 503 4.8E-37 T 11-10-2018 AMK58_14215 f28e66fbd991397363e9ac67d41526f8 327 SUPERFAMILY SSF51735 1 309 2.57E-82 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_14215 f28e66fbd991397363e9ac67d41526f8 327 Gene3D G3DSA:3.40.50.720 124 293 4.2E-90 T 11-10-2018 AMK58_14215 f28e66fbd991397363e9ac67d41526f8 327 PIRSF PIRSF001439 1 320 1.9E-83 T 11-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 AMK58_14215 f28e66fbd991397363e9ac67d41526f8 327 Gene3D G3DSA:3.30.1780.10 6 310 4.2E-90 T 11-10-2018 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 AMK58_14215 f28e66fbd991397363e9ac67d41526f8 327 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 12 304 1.7E-71 T 11-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 AMK58_28735 27e1121570ccd17b1c94206a88063499 373 Gene3D G3DSA:3.40.50.2000 185 348 1.7E-33 T 11-10-2018 AMK58_28735 27e1121570ccd17b1c94206a88063499 373 Pfam PF13579 Glycosyl transferase 4-like domain 25 175 4.8E-8 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AMK58_28735 27e1121570ccd17b1c94206a88063499 373 Pfam PF13692 Glycosyl transferases group 1 198 338 1.7E-16 T 11-10-2018 AMK58_28735 27e1121570ccd17b1c94206a88063499 373 SUPERFAMILY SSF53756 25 370 9.94E-34 T 11-10-2018 AMK58_29270 27e1121570ccd17b1c94206a88063499 373 Gene3D G3DSA:3.40.50.2000 185 348 1.7E-33 T 11-10-2018 AMK58_29270 27e1121570ccd17b1c94206a88063499 373 Pfam PF13579 Glycosyl transferase 4-like domain 25 175 4.8E-8 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AMK58_29270 27e1121570ccd17b1c94206a88063499 373 Pfam PF13692 Glycosyl transferases group 1 198 338 1.7E-16 T 11-10-2018 AMK58_29270 27e1121570ccd17b1c94206a88063499 373 SUPERFAMILY SSF53756 25 370 9.94E-34 T 11-10-2018 AMK58_08810 d4e52c4bd23ca8c6f88cb50c9353963b 258 PRINTS PR01805 VacJ lipoprotein signature 145 162 8.4E-22 T 11-10-2018 IPR007428 MlaA lipoprotein GO:0016020 AMK58_08810 d4e52c4bd23ca8c6f88cb50c9353963b 258 PRINTS PR01805 VacJ lipoprotein signature 41 54 8.4E-22 T 11-10-2018 IPR007428 MlaA lipoprotein GO:0016020 AMK58_08810 d4e52c4bd23ca8c6f88cb50c9353963b 258 PRINTS PR01805 VacJ lipoprotein signature 109 126 8.4E-22 T 11-10-2018 IPR007428 MlaA lipoprotein GO:0016020 AMK58_08810 d4e52c4bd23ca8c6f88cb50c9353963b 258 PRINTS PR01805 VacJ lipoprotein signature 58 74 8.4E-22 T 11-10-2018 IPR007428 MlaA lipoprotein GO:0016020 AMK58_08810 d4e52c4bd23ca8c6f88cb50c9353963b 258 Pfam PF04333 MlaA lipoprotein 40 236 4.4E-67 T 11-10-2018 IPR007428 MlaA lipoprotein GO:0016020 AMK58_09440 342b3bd9cd80da32f04a8361a8c8cbb6 532 ProSitePatterns PS00455 Putative AMP-binding domain signature. 177 188 - T 11-10-2018 IPR020845 AMP-binding, conserved site AMK58_09440 342b3bd9cd80da32f04a8361a8c8cbb6 532 Pfam PF00501 AMP-binding enzyme 18 424 1.2E-84 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMK58_09440 342b3bd9cd80da32f04a8361a8c8cbb6 532 Gene3D G3DSA:3.40.50.12780 3 419 7.8E-93 T 11-10-2018 AMK58_09440 342b3bd9cd80da32f04a8361a8c8cbb6 532 Pfam PF13193 AMP-binding enzyme C-terminal domain 433 510 3.7E-13 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMK58_09440 342b3bd9cd80da32f04a8361a8c8cbb6 532 Gene3D G3DSA:3.30.300.30 420 521 4.1E-22 T 11-10-2018 AMK58_09440 342b3bd9cd80da32f04a8361a8c8cbb6 532 SUPERFAMILY SSF56801 9 520 5.36E-122 T 11-10-2018 AMK58_19455 61181684b8e08f1940a1bce04fe9fb2f 542 Pfam PF00512 His Kinase A (phospho-acceptor) domain 318 385 2.3E-18 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_19455 61181684b8e08f1940a1bce04fe9fb2f 542 SUPERFAMILY SSF55874 374 540 1.57E-39 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_19455 61181684b8e08f1940a1bce04fe9fb2f 542 Gene3D G3DSA:3.30.450.20 178 267 8.7E-16 T 11-10-2018 AMK58_19455 61181684b8e08f1940a1bce04fe9fb2f 542 SMART SM00387 431 542 6.0E-28 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_19455 61181684b8e08f1940a1bce04fe9fb2f 542 Gene3D G3DSA:3.30.450.20 35 175 3.4E-19 T 11-10-2018 AMK58_19455 61181684b8e08f1940a1bce04fe9fb2f 542 PRINTS PR00344 Bacterial sensor protein C-terminal signature 504 522 1.5E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_19455 61181684b8e08f1940a1bce04fe9fb2f 542 PRINTS PR00344 Bacterial sensor protein C-terminal signature 528 541 1.5E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_19455 61181684b8e08f1940a1bce04fe9fb2f 542 PRINTS PR00344 Bacterial sensor protein C-terminal signature 469 483 1.5E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_19455 61181684b8e08f1940a1bce04fe9fb2f 542 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 432 540 3.4E-23 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_19455 61181684b8e08f1940a1bce04fe9fb2f 542 SUPERFAMILY SSF47384 304 386 1.82E-19 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_19455 61181684b8e08f1940a1bce04fe9fb2f 542 SMART SM00388 316 385 4.6E-20 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_19455 61181684b8e08f1940a1bce04fe9fb2f 542 Gene3D G3DSA:3.30.565.10 387 542 4.4E-39 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_19455 61181684b8e08f1940a1bce04fe9fb2f 542 Gene3D G3DSA:1.10.287.130 301 386 1.3E-21 T 11-10-2018 AMK58_18535 f35604c6ab78ef41f42cf1d21ed77147 388 Gene3D G3DSA:2.40.40.10 288 378 1.3E-85 T 11-10-2018 IPR036908 RlpA-like domain superfamily AMK58_18535 f35604c6ab78ef41f42cf1d21ed77147 388 Gene3D G3DSA:2.40.40.10 58 148 1.2E-25 T 11-10-2018 IPR036908 RlpA-like domain superfamily AMK58_18535 f35604c6ab78ef41f42cf1d21ed77147 388 SMART SM00925 150 282 3.0E-68 T 11-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 AMK58_18535 f35604c6ab78ef41f42cf1d21ed77147 388 Gene3D G3DSA:2.40.240.50 149 171 1.2E-25 T 11-10-2018 AMK58_18535 f35604c6ab78ef41f42cf1d21ed77147 388 Gene3D G3DSA:2.40.240.50 176 287 1.3E-85 T 11-10-2018 AMK58_18535 f35604c6ab78ef41f42cf1d21ed77147 388 SUPERFAMILY SSF50685 48 380 2.2E-112 T 11-10-2018 IPR036908 RlpA-like domain superfamily AMK58_18535 f35604c6ab78ef41f42cf1d21ed77147 388 Pfam PF03562 MltA specific insert domain 64 282 2.7E-66 T 11-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 AMK58_18535 f35604c6ab78ef41f42cf1d21ed77147 388 Pfam PF06725 3D domain 301 375 4.6E-21 T 11-10-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 AMK58_18535 f35604c6ab78ef41f42cf1d21ed77147 388 PIRSF PIRSF019422 6 174 6.8E-23 T 11-10-2018 IPR026044 Membrane-bound lytic murein transglycosylase A AMK58_18535 f35604c6ab78ef41f42cf1d21ed77147 388 PIRSF PIRSF019422 170 388 1.7E-84 T 11-10-2018 IPR026044 Membrane-bound lytic murein transglycosylase A AMK58_23520 974a7fa9faedc7fc89511246fa5c337f 363 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_23520 974a7fa9faedc7fc89511246fa5c337f 363 Pfam PF08402 TOBE domain 278 361 2.0E-8 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMK58_23520 974a7fa9faedc7fc89511246fa5c337f 363 Pfam PF00005 ABC transporter 21 163 8.9E-37 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_23520 974a7fa9faedc7fc89511246fa5c337f 363 SMART SM00382 30 221 3.1E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_23520 974a7fa9faedc7fc89511246fa5c337f 363 Gene3D G3DSA:3.40.50.300 6 223 5.1E-73 T 11-10-2018 AMK58_23520 974a7fa9faedc7fc89511246fa5c337f 363 Gene3D G3DSA:2.40.50.140 284 353 1.4E-10 T 11-10-2018 AMK58_23520 974a7fa9faedc7fc89511246fa5c337f 363 SUPERFAMILY SSF50331 239 357 3.23E-12 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMK58_23520 974a7fa9faedc7fc89511246fa5c337f 363 Gene3D G3DSA:2.40.50.940 224 359 1.4E-10 T 11-10-2018 AMK58_23520 974a7fa9faedc7fc89511246fa5c337f 363 SUPERFAMILY SSF52540 6 243 4.76E-90 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_28935 a228af0228fcf9b9a45237467c9d7b63 288 SUPERFAMILY SSF53448 1 286 7.15E-92 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_28935 a228af0228fcf9b9a45237467c9d7b63 288 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 2 286 3.0E-150 T 11-10-2018 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|KEGG: 00525+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 AMK58_28935 a228af0228fcf9b9a45237467c9d7b63 288 Gene3D G3DSA:3.90.550.10 1 288 1.2E-86 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_28935 a228af0228fcf9b9a45237467c9d7b63 288 Pfam PF00483 Nucleotidyl transferase 2 238 1.1E-68 T 11-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AMK58_05390 216816b5169c6707e68da9eb415e1ab2 95 Pfam PF07045 Domain of unknown function (DUF1330) 2 94 3.3E-36 T 11-10-2018 IPR010753 Domain of unknown function DUF1330 AMK58_05390 216816b5169c6707e68da9eb415e1ab2 95 SUPERFAMILY SSF54909 1 94 1.24E-31 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel AMK58_05390 216816b5169c6707e68da9eb415e1ab2 95 Gene3D G3DSA:3.30.70.100 1 95 1.4E-34 T 11-10-2018 AMK58_28405 99348b0b696439648c21b16e8819722b 117 Pfam PF01527 Transposase 9 60 1.0E-15 T 11-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMK58_28405 99348b0b696439648c21b16e8819722b 117 SUPERFAMILY SSF48295 9 55 8.37E-10 T 11-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMK58_04175 427c87603dc93f5a4cb1c769ad2c1cb2 198 SUPERFAMILY SSF55166 82 198 8.11E-30 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AMK58_04175 427c87603dc93f5a4cb1c769ad2c1cb2 198 Pfam PF05951 Bacterial protein of unknown function (DUF882) 52 198 2.4E-58 T 11-10-2018 IPR010275 Protein of unknown function DUF882 AMK58_04175 427c87603dc93f5a4cb1c769ad2c1cb2 198 Gene3D G3DSA:3.30.1380.10 101 198 8.8E-11 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AMK58_16620 b2221042fa07324a7897ef49080f0624 350 Gene3D G3DSA:3.40.50.2300 70 160 1.9E-19 T 11-10-2018 AMK58_16620 b2221042fa07324a7897ef49080f0624 350 ProSitePatterns PS00356 LacI-type HTH domain signature. 15 33 - T 11-10-2018 AMK58_16620 b2221042fa07324a7897ef49080f0624 350 SUPERFAMILY SSF47413 12 70 2.25E-16 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMK58_16620 b2221042fa07324a7897ef49080f0624 350 Gene3D G3DSA:1.10.260.40 7 69 1.4E-19 T 11-10-2018 AMK58_16620 b2221042fa07324a7897ef49080f0624 350 SUPERFAMILY SSF53822 72 341 1.73E-71 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMK58_16620 b2221042fa07324a7897ef49080f0624 350 Gene3D G3DSA:3.40.50.2300 166 340 7.6E-51 T 11-10-2018 AMK58_16620 b2221042fa07324a7897ef49080f0624 350 Pfam PF13377 Periplasmic binding protein-like domain 180 339 4.5E-39 T 11-10-2018 AMK58_16620 b2221042fa07324a7897ef49080f0624 350 SMART SM00354 12 82 3.1E-25 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMK58_16620 b2221042fa07324a7897ef49080f0624 350 Pfam PF00356 Bacterial regulatory proteins, lacI family 14 59 2.7E-15 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMK58_19870 50aa4cf9d1aa867817e481e88610b0cf 1013 SUPERFAMILY SSF55073 22 196 6.75E-41 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_19870 50aa4cf9d1aa867817e481e88610b0cf 1013 SUPERFAMILY SSF52540 216 472 8.55E-10 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_19870 50aa4cf9d1aa867817e481e88610b0cf 1013 Pfam PF13191 AAA ATPase domain 217 400 2.4E-17 T 11-10-2018 AMK58_19870 50aa4cf9d1aa867817e481e88610b0cf 1013 Gene3D G3DSA:1.25.40.10 702 1011 1.0E-24 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_19870 50aa4cf9d1aa867817e481e88610b0cf 1013 SUPERFAMILY SSF48452 803 988 3.21E-10 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_19870 50aa4cf9d1aa867817e481e88610b0cf 1013 SMART SM00044 5 180 7.5E-7 T 11-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMK58_19870 50aa4cf9d1aa867817e481e88610b0cf 1013 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 24 192 1.5E-22 T 11-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMK58_19870 50aa4cf9d1aa867817e481e88610b0cf 1013 Gene3D G3DSA:3.30.70.1230 17 207 7.8E-42 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_18295 7322496abc1bea49b020d76e332c316b 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 1.0E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_18295 7322496abc1bea49b020d76e332c316b 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 1.0E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_18295 7322496abc1bea49b020d76e332c316b 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 1.0E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_18295 7322496abc1bea49b020d76e332c316b 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 205 225 1.0E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_18295 7322496abc1bea49b020d76e332c316b 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 1.0E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_18295 7322496abc1bea49b020d76e332c316b 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 1.0E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_18295 7322496abc1bea49b020d76e332c316b 243 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMK58_18295 7322496abc1bea49b020d76e332c316b 243 Gene3D G3DSA:3.40.50.720 2 242 1.5E-69 T 11-10-2018 AMK58_18295 7322496abc1bea49b020d76e332c316b 243 SUPERFAMILY SSF51735 5 242 1.42E-68 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_18295 7322496abc1bea49b020d76e332c316b 243 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 3.1E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_18295 7322496abc1bea49b020d76e332c316b 243 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 3.1E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_18295 7322496abc1bea49b020d76e332c316b 243 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 3.1E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_18295 7322496abc1bea49b020d76e332c316b 243 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 242 1.3E-50 T 11-10-2018 AMK58_18295 7322496abc1bea49b020d76e332c316b 243 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 5 187 6.1E-4 T 11-10-2018 AMK58_09340 b27cd23447536d78d7984dea3b398fcf 309 SUPERFAMILY SSF51569 20 305 1.17E-65 T 11-10-2018 AMK58_09340 b27cd23447536d78d7984dea3b398fcf 309 PIRSF PIRSF038992 21 308 4.7E-65 T 11-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AMK58_09340 b27cd23447536d78d7984dea3b398fcf 309 SMART SM01133 40 289 1.7E-46 T 11-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AMK58_09340 b27cd23447536d78d7984dea3b398fcf 309 Pfam PF01791 DeoC/LacD family aldolase 41 289 4.0E-35 T 11-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AMK58_09340 b27cd23447536d78d7984dea3b398fcf 309 Gene3D G3DSA:3.20.20.70 18 309 2.7E-80 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_02660 14fc9cf3fefb48fb5df21e3bd318a95b 339 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 140 319 5.0E-50 T 11-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMK58_02660 14fc9cf3fefb48fb5df21e3bd318a95b 339 Gene3D G3DSA:3.30.360.10 129 316 2.4E-130 T 11-10-2018 AMK58_02660 14fc9cf3fefb48fb5df21e3bd318a95b 339 PIRSF PIRSF000148 2 337 7.3E-116 T 11-10-2018 AMK58_02660 14fc9cf3fefb48fb5df21e3bd318a95b 339 SMART SM00859 4 120 1.4E-35 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AMK58_02660 14fc9cf3fefb48fb5df21e3bd318a95b 339 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 230 244 - T 11-10-2018 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMK58_02660 14fc9cf3fefb48fb5df21e3bd318a95b 339 TIGRFAM TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase 5 335 1.2E-120 T 11-10-2018 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMK58_02660 14fc9cf3fefb48fb5df21e3bd318a95b 339 Gene3D G3DSA:3.40.50.720 5 331 2.4E-130 T 11-10-2018 AMK58_02660 14fc9cf3fefb48fb5df21e3bd318a95b 339 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 2 333 32.392 T 11-10-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMK58_02660 14fc9cf3fefb48fb5df21e3bd318a95b 339 SUPERFAMILY SSF55347 133 320 1.37E-66 T 11-10-2018 AMK58_02660 14fc9cf3fefb48fb5df21e3bd318a95b 339 SUPERFAMILY SSF51735 3 158 9.37E-45 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_02660 14fc9cf3fefb48fb5df21e3bd318a95b 339 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 5 118 4.1E-29 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AMK58_15060 f8a3866b5405587716f782a6741ed98f 377 Gene3D G3DSA:3.40.710.10 87 376 4.8E-77 T 11-10-2018 AMK58_15060 f8a3866b5405587716f782a6741ed98f 377 SUPERFAMILY SSF56601 121 359 2.23E-72 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMK58_15060 f8a3866b5405587716f782a6741ed98f 377 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 124 342 6.1E-55 T 11-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 AMK58_15060 f8a3866b5405587716f782a6741ed98f 377 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 229 242 7.2E-11 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMK58_15060 f8a3866b5405587716f782a6741ed98f 377 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 149 160 7.2E-11 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMK58_15060 f8a3866b5405587716f782a6741ed98f 377 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 202 219 7.2E-11 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMK58_08440 4687b77309e471a03fd80f20d5d8129c 205 SUPERFAMILY SSF46785 96 171 2.97E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_08440 4687b77309e471a03fd80f20d5d8129c 205 SMART SM00419 118 166 3.0E-7 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMK58_08440 4687b77309e471a03fd80f20d5d8129c 205 Gene3D G3DSA:1.10.10.10 95 179 4.0E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_08440 4687b77309e471a03fd80f20d5d8129c 205 Gene3D G3DSA:2.60.120.10 1 94 6.1E-15 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_08440 4687b77309e471a03fd80f20d5d8129c 205 Pfam PF13545 Crp-like helix-turn-helix domain 98 171 1.4E-14 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMK58_08440 4687b77309e471a03fd80f20d5d8129c 205 SUPERFAMILY SSF51206 2 93 4.84E-10 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like AMK58_20155 50193f52759a81db0c510c9da83d2167 234 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_20155 50193f52759a81db0c510c9da83d2167 234 SMART SM00382 26 213 6.8E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_20155 50193f52759a81db0c510c9da83d2167 234 SUPERFAMILY SSF52540 2 231 1.2E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_20155 50193f52759a81db0c510c9da83d2167 234 Pfam PF00005 ABC transporter 17 162 6.1E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_20155 50193f52759a81db0c510c9da83d2167 234 Gene3D G3DSA:3.40.50.300 1 234 3.2E-63 T 11-10-2018 AMK58_20920 afc3ca5d12f942ab1c609ed1572c9040 267 PRINTS PR00164 ABC-2 type transport system membrane protein signature 187 206 5.0E-8 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMK58_20920 afc3ca5d12f942ab1c609ed1572c9040 267 PRINTS PR00164 ABC-2 type transport system membrane protein signature 69 91 5.0E-8 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMK58_20920 afc3ca5d12f942ab1c609ed1572c9040 267 PRINTS PR00164 ABC-2 type transport system membrane protein signature 207 226 5.0E-8 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMK58_20920 afc3ca5d12f942ab1c609ed1572c9040 267 Pfam PF01061 ABC-2 type transporter 20 229 5.6E-32 T 11-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 AMK58_20920 afc3ca5d12f942ab1c609ed1572c9040 267 PIRSF PIRSF006648 1 264 3.2E-22 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMK58_21105 877d09e1657b0bbf622dd922ea478f23 391 Gene3D G3DSA:1.20.1250.20 208 386 3.4E-20 T 11-10-2018 AMK58_21105 877d09e1657b0bbf622dd922ea478f23 391 Pfam PF07690 Major Facilitator Superfamily 27 353 3.1E-18 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMK58_21105 877d09e1657b0bbf622dd922ea478f23 391 Gene3D G3DSA:1.20.1250.20 21 204 7.4E-13 T 11-10-2018 AMK58_21105 877d09e1657b0bbf622dd922ea478f23 391 SUPERFAMILY SSF103473 22 383 4.05E-39 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_13435 d08bbd231227a96b6f189aecb8ef4874 261 SUPERFAMILY SSF52540 88 240 2.58E-25 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_13435 d08bbd231227a96b6f189aecb8ef4874 261 PIRSF PIRSF003073 1 252 4.4E-85 T 11-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein AMK58_13435 d08bbd231227a96b6f189aecb8ef4874 261 Pfam PF01695 IstB-like ATP binding protein 54 231 9.9E-63 T 11-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 AMK58_13435 d08bbd231227a96b6f189aecb8ef4874 261 SMART SM00382 99 231 7.1E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_13435 d08bbd231227a96b6f189aecb8ef4874 261 Gene3D G3DSA:3.40.50.300 63 247 2.3E-48 T 11-10-2018 AMK58_13150 c6d734df82ed2c66996d3bdc70b2e18e 547 SUPERFAMILY SSF54849 138 203 6.64E-24 T 11-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily AMK58_13150 c6d734df82ed2c66996d3bdc70b2e18e 547 Gene3D G3DSA:3.30.260.10 137 410 6.4E-239 T 11-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily AMK58_13150 c6d734df82ed2c66996d3bdc70b2e18e 547 Gene3D G3DSA:1.10.560.10 7 522 6.4E-239 T 11-10-2018 IPR027413 GroEL-like equatorial domain superfamily AMK58_13150 c6d734df82ed2c66996d3bdc70b2e18e 547 SUPERFAMILY SSF48592 7 522 1.53E-78 T 11-10-2018 IPR027413 GroEL-like equatorial domain superfamily AMK58_13150 c6d734df82ed2c66996d3bdc70b2e18e 547 PRINTS PR00298 60kDa chaperonin signature 83 110 5.2E-74 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMK58_13150 c6d734df82ed2c66996d3bdc70b2e18e 547 PRINTS PR00298 60kDa chaperonin signature 268 291 5.2E-74 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMK58_13150 c6d734df82ed2c66996d3bdc70b2e18e 547 PRINTS PR00298 60kDa chaperonin signature 398 419 5.2E-74 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMK58_13150 c6d734df82ed2c66996d3bdc70b2e18e 547 PRINTS PR00298 60kDa chaperonin signature 27 53 5.2E-74 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMK58_13150 c6d734df82ed2c66996d3bdc70b2e18e 547 PRINTS PR00298 60kDa chaperonin signature 350 375 5.2E-74 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMK58_13150 c6d734df82ed2c66996d3bdc70b2e18e 547 Hamap MF_00600 60 kDa chaperonin [groL]. 2 545 42.587 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMK58_13150 c6d734df82ed2c66996d3bdc70b2e18e 547 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 11-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMK58_13150 c6d734df82ed2c66996d3bdc70b2e18e 547 Gene3D G3DSA:3.50.7.10 192 373 6.4E-239 T 11-10-2018 IPR027409 GroEL-like apical domain superfamily AMK58_13150 c6d734df82ed2c66996d3bdc70b2e18e 547 SUPERFAMILY SSF52029 184 376 1.01E-85 T 11-10-2018 IPR027409 GroEL-like apical domain superfamily AMK58_13150 c6d734df82ed2c66996d3bdc70b2e18e 547 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 525 3.7E-100 T 11-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 AMK58_13150 c6d734df82ed2c66996d3bdc70b2e18e 547 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 528 3.4E-262 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMK58_03240 8d3d0372e61c87f6c4abfae80edc36d9 361 Pfam PF08238 Sel1 repeat 316 352 6.6E-6 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_03240 8d3d0372e61c87f6c4abfae80edc36d9 361 Pfam PF08238 Sel1 repeat 273 315 5.0E-4 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_03240 8d3d0372e61c87f6c4abfae80edc36d9 361 Gene3D G3DSA:1.25.40.10 201 361 2.6E-21 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_03240 8d3d0372e61c87f6c4abfae80edc36d9 361 SUPERFAMILY SSF81901 254 356 6.41E-16 T 11-10-2018 AMK58_03240 8d3d0372e61c87f6c4abfae80edc36d9 361 SMART SM00671 316 352 9.5E-5 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_03240 8d3d0372e61c87f6c4abfae80edc36d9 361 SMART SM00671 273 315 0.051 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_06665 84eb9f9cbfcf438dab0751423ee9a4f2 381 SUPERFAMILY SSF47384 3 83 5.1E-14 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_06665 84eb9f9cbfcf438dab0751423ee9a4f2 381 SMART SM00388 18 83 3.5E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_06665 84eb9f9cbfcf438dab0751423ee9a4f2 381 Pfam PF00512 His Kinase A (phospho-acceptor) domain 18 83 5.3E-10 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_06665 84eb9f9cbfcf438dab0751423ee9a4f2 381 Gene3D G3DSA:3.40.50.2300 257 379 1.4E-18 T 11-10-2018 AMK58_06665 84eb9f9cbfcf438dab0751423ee9a4f2 381 Gene3D G3DSA:1.10.287.130 1 81 1.2E-15 T 11-10-2018 AMK58_06665 84eb9f9cbfcf438dab0751423ee9a4f2 381 PRINTS PR00344 Bacterial sensor protein C-terminal signature 181 191 1.2E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_06665 84eb9f9cbfcf438dab0751423ee9a4f2 381 PRINTS PR00344 Bacterial sensor protein C-terminal signature 198 216 1.2E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_06665 84eb9f9cbfcf438dab0751423ee9a4f2 381 PRINTS PR00344 Bacterial sensor protein C-terminal signature 222 235 1.2E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_06665 84eb9f9cbfcf438dab0751423ee9a4f2 381 PRINTS PR00344 Bacterial sensor protein C-terminal signature 163 177 1.2E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_06665 84eb9f9cbfcf438dab0751423ee9a4f2 381 SMART SM00448 258 372 1.3E-14 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_06665 84eb9f9cbfcf438dab0751423ee9a4f2 381 SMART SM00387 127 238 8.8E-28 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_06665 84eb9f9cbfcf438dab0751423ee9a4f2 381 Gene3D G3DSA:3.30.565.10 83 238 2.3E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_06665 84eb9f9cbfcf438dab0751423ee9a4f2 381 SUPERFAMILY SSF52172 261 377 1.21E-20 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_06665 84eb9f9cbfcf438dab0751423ee9a4f2 381 SUPERFAMILY SSF55874 72 236 1.07E-39 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_06665 84eb9f9cbfcf438dab0751423ee9a4f2 381 Pfam PF00072 Response regulator receiver domain 261 372 1.1E-12 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_06665 84eb9f9cbfcf438dab0751423ee9a4f2 381 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 128 236 4.5E-21 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_04300 ab3aa8510aad34937293ad84fa7eb36c 208 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 4 198 26.138 T 11-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 AMK58_04300 ab3aa8510aad34937293ad84fa7eb36c 208 TIGRFAM TIGR02665 molyb_mobA: molybdenum cofactor guanylyltransferase 6 196 1.9E-60 T 11-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 AMK58_04300 ab3aa8510aad34937293ad84fa7eb36c 208 SUPERFAMILY SSF53448 6 195 3.75E-25 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_04300 ab3aa8510aad34937293ad84fa7eb36c 208 Pfam PF12804 MobA-like NTP transferase domain 8 165 5.5E-32 T 11-10-2018 IPR025877 MobA-like NTP transferase AMK58_04300 ab3aa8510aad34937293ad84fa7eb36c 208 Gene3D G3DSA:3.90.550.10 2 203 3.8E-45 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_13925 3c0486d984f40139476be35c9f1fc4df 314 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 111 283 1.9E-54 T 11-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AMK58_13925 3c0486d984f40139476be35c9f1fc4df 314 Gene3D G3DSA:3.40.50.720 2 307 1.0E-120 T 11-10-2018 AMK58_13925 3c0486d984f40139476be35c9f1fc4df 314 SUPERFAMILY SSF51735 105 283 2.07E-52 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_13925 3c0486d984f40139476be35c9f1fc4df 314 Gene3D G3DSA:3.40.50.720 104 299 1.0E-120 T 11-10-2018 AMK58_13925 3c0486d984f40139476be35c9f1fc4df 314 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 18 310 1.3E-12 T 11-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 AMK58_13925 3c0486d984f40139476be35c9f1fc4df 314 SUPERFAMILY SSF52283 1 124 2.76E-24 T 11-10-2018 AMK58_04085 f4011e590ce84bfea2ebe699abd6fca1 695 Pfam PF05746 DALR anticodon binding domain 581 686 4.3E-9 T 11-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 AMK58_04085 f4011e590ce84bfea2ebe699abd6fca1 695 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 3 693 5.3E-198 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMK58_04085 f4011e590ce84bfea2ebe699abd6fca1 695 SUPERFAMILY SSF109604 339 488 2.2E-20 T 11-10-2018 AMK58_04085 f4011e590ce84bfea2ebe699abd6fca1 695 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 1 693 24.74 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMK58_04085 f4011e590ce84bfea2ebe699abd6fca1 695 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 243 258 1.5E-32 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMK58_04085 f4011e590ce84bfea2ebe699abd6fca1 695 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 48 60 1.5E-32 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMK58_04085 f4011e590ce84bfea2ebe699abd6fca1 695 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 5 18 1.5E-32 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMK58_04085 f4011e590ce84bfea2ebe699abd6fca1 695 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 316 332 1.5E-32 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMK58_04085 f4011e590ce84bfea2ebe699abd6fca1 695 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 392 411 1.5E-32 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMK58_04085 f4011e590ce84bfea2ebe699abd6fca1 695 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 4 551 8.6E-213 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMK58_11020 8a38d2bec9c295507cda28b0ed147b02 93 TIGRFAM TIGR03647 Na_symport_sm: putative solute:sodium symporter small subunit 17 92 6.9E-35 T 11-10-2018 IPR019886 Sodium symporter small subunit, predicted AMK58_11020 8a38d2bec9c295507cda28b0ed147b02 93 Pfam PF13937 Domain of unknown function (DUF4212) 15 91 1.0E-34 T 11-10-2018 IPR019886 Sodium symporter small subunit, predicted AMK58_23995 a9269c7caf7eca55c006f46bd9f19619 341 PRINTS PR00091 Nitrogenase component II signature 84 97 7.2E-5 T 11-10-2018 AMK58_23995 a9269c7caf7eca55c006f46bd9f19619 341 PRINTS PR00091 Nitrogenase component II signature 106 121 7.2E-5 T 11-10-2018 AMK58_23995 a9269c7caf7eca55c006f46bd9f19619 341 Pfam PF13614 AAA domain 80 256 1.3E-48 T 11-10-2018 IPR025669 AAA domain AMK58_23995 a9269c7caf7eca55c006f46bd9f19619 341 Gene3D G3DSA:1.10.260.40 3 63 2.9E-5 T 11-10-2018 AMK58_23995 a9269c7caf7eca55c006f46bd9f19619 341 SUPERFAMILY SSF52540 80 333 4.33E-55 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_23995 a9269c7caf7eca55c006f46bd9f19619 341 Gene3D G3DSA:3.40.50.300 76 336 4.1E-69 T 11-10-2018 AMK58_26420 79eacc0b6760250227226908f6730aae 427 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 8 416 2.0E-99 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit AMK58_26420 79eacc0b6760250227226908f6730aae 427 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 422 1.1E-118 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 AMK58_26420 79eacc0b6760250227226908f6730aae 427 PIRSF PIRSF006066 1 427 9.1E-137 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 AMK58_26455 8ad1909d1d3fb56ceae5b7131e45a571 507 Gene3D G3DSA:2.40.33.10 79 175 5.1E-166 T 11-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_26455 8ad1909d1d3fb56ceae5b7131e45a571 507 PRINTS PR01050 Pyruvate kinase family signature 272 296 1.4E-64 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_26455 8ad1909d1d3fb56ceae5b7131e45a571 507 PRINTS PR01050 Pyruvate kinase family signature 297 315 1.4E-64 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_26455 8ad1909d1d3fb56ceae5b7131e45a571 507 PRINTS PR01050 Pyruvate kinase family signature 193 207 1.4E-64 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_26455 8ad1909d1d3fb56ceae5b7131e45a571 507 PRINTS PR01050 Pyruvate kinase family signature 247 271 1.4E-64 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_26455 8ad1909d1d3fb56ceae5b7131e45a571 507 PRINTS PR01050 Pyruvate kinase family signature 68 84 1.4E-64 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_26455 8ad1909d1d3fb56ceae5b7131e45a571 507 PRINTS PR01050 Pyruvate kinase family signature 220 246 1.4E-64 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_26455 8ad1909d1d3fb56ceae5b7131e45a571 507 PRINTS PR01050 Pyruvate kinase family signature 316 332 1.4E-64 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_26455 8ad1909d1d3fb56ceae5b7131e45a571 507 SUPERFAMILY SSF52935 326 476 1.44E-37 T 11-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_26455 8ad1909d1d3fb56ceae5b7131e45a571 507 Pfam PF02887 Pyruvate kinase, alpha/beta domain 361 473 3.3E-29 T 11-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_26455 8ad1909d1d3fb56ceae5b7131e45a571 507 SUPERFAMILY SSF50800 79 174 6.63E-22 T 11-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily AMK58_26455 8ad1909d1d3fb56ceae5b7131e45a571 507 Gene3D G3DSA:3.20.20.60 11 338 5.1E-166 T 11-10-2018 AMK58_26455 8ad1909d1d3fb56ceae5b7131e45a571 507 Gene3D G3DSA:3.40.1380.20 339 472 5.1E-166 T 11-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_26455 8ad1909d1d3fb56ceae5b7131e45a571 507 SUPERFAMILY SSF51621 4 345 1.29E-96 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMK58_26455 8ad1909d1d3fb56ceae5b7131e45a571 507 Pfam PF00224 Pyruvate kinase, barrel domain 11 340 3.3E-107 T 11-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_26455 8ad1909d1d3fb56ceae5b7131e45a571 507 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 11 474 3.9E-149 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_22145 cc134c9a42df824d90b51d7bfe0574c4 358 Gene3D G3DSA:2.40.50.100 235 281 3.2E-5 T 11-10-2018 AMK58_22145 cc134c9a42df824d90b51d7bfe0574c4 358 SUPERFAMILY SSF52540 2 240 5.96E-84 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_22145 cc134c9a42df824d90b51d7bfe0574c4 358 Gene3D G3DSA:3.40.50.300 1 234 2.8E-77 T 11-10-2018 AMK58_22145 cc134c9a42df824d90b51d7bfe0574c4 358 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_22145 cc134c9a42df824d90b51d7bfe0574c4 358 Gene3D G3DSA:2.40.50.140 294 314 3.2E-5 T 11-10-2018 AMK58_22145 cc134c9a42df824d90b51d7bfe0574c4 358 Pfam PF08402 TOBE domain 276 343 5.0E-11 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMK58_22145 cc134c9a42df824d90b51d7bfe0574c4 358 SUPERFAMILY SSF50331 234 342 5.67E-14 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMK58_22145 cc134c9a42df824d90b51d7bfe0574c4 358 SMART SM00382 25 208 1.6E-19 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_22145 cc134c9a42df824d90b51d7bfe0574c4 358 Pfam PF00005 ABC transporter 16 159 8.8E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_01795 432c7931c53c4b9f43a30a4aeda65d98 623 Gene3D G3DSA:3.30.420.40 6 365 5.2E-78 T 11-10-2018 AMK58_01795 432c7931c53c4b9f43a30a4aeda65d98 623 SUPERFAMILY SSF53067 177 368 2.74E-33 T 11-10-2018 AMK58_01795 432c7931c53c4b9f43a30a4aeda65d98 623 SUPERFAMILY SSF53067 4 163 1.39E-27 T 11-10-2018 AMK58_01795 432c7931c53c4b9f43a30a4aeda65d98 623 Pfam PF00012 Hsp70 protein 4 68 1.1E-8 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMK58_01795 432c7931c53c4b9f43a30a4aeda65d98 623 Pfam PF00012 Hsp70 protein 83 368 1.3E-36 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMK58_01795 432c7931c53c4b9f43a30a4aeda65d98 623 Gene3D G3DSA:3.90.640.10 214 297 5.2E-78 T 11-10-2018 AMK58_01795 432c7931c53c4b9f43a30a4aeda65d98 623 PRINTS PR00301 70kDa heat shock protein signature 3 16 1.6E-7 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMK58_01795 432c7931c53c4b9f43a30a4aeda65d98 623 PRINTS PR00301 70kDa heat shock protein signature 120 140 1.6E-7 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMK58_01795 432c7931c53c4b9f43a30a4aeda65d98 623 PRINTS PR00301 70kDa heat shock protein signature 322 338 1.6E-7 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMK58_01795 432c7931c53c4b9f43a30a4aeda65d98 623 PRINTS PR00301 70kDa heat shock protein signature 188 198 1.6E-7 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMK58_01795 432c7931c53c4b9f43a30a4aeda65d98 623 Gene3D G3DSA:3.30.420.40 175 356 5.2E-78 T 11-10-2018 AMK58_27985 8d5a0b632419791a6295abecdefd86e0 707 SUPERFAMILY SSF52540 17 240 1.31E-11 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_27985 8d5a0b632419791a6295abecdefd86e0 707 Pfam PF07693 KAP family P-loop domain 32 277 7.4E-40 T 11-10-2018 IPR011646 KAP family P-loop domain AMK58_27985 8d5a0b632419791a6295abecdefd86e0 707 SMART SM00382 57 262 1.5E-4 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_05265 8366343bc69fb361332267e4aeee6d19 339 Gene3D G3DSA:3.40.1780.10 155 336 6.6E-73 T 11-10-2018 AMK58_05265 8366343bc69fb361332267e4aeee6d19 339 Gene3D G3DSA:3.40.1780.10 1 65 3.1E-16 T 11-10-2018 AMK58_05265 8366343bc69fb361332267e4aeee6d19 339 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1 335 4.7E-118 T 11-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 AMK58_05265 8366343bc69fb361332267e4aeee6d19 339 Gene3D G3DSA:2.40.10.240 66 154 5.4E-23 T 11-10-2018 AMK58_05265 8366343bc69fb361332267e4aeee6d19 339 Pfam PF02547 Queuosine biosynthesis protein 4 336 3.0E-130 T 11-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 AMK58_05265 8366343bc69fb361332267e4aeee6d19 339 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 337 45.505 T 11-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 AMK58_05265 8366343bc69fb361332267e4aeee6d19 339 SUPERFAMILY SSF111337 1 336 7.46E-128 T 11-10-2018 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 AMK58_15180 9b3befab7ffa7b8d2fada11b8d4355bd 398 Gene3D G3DSA:2.40.50.100 71 218 1.9E-97 T 11-10-2018 AMK58_15180 9b3befab7ffa7b8d2fada11b8d4355bd 398 Gene3D G3DSA:2.40.420.20 315 383 1.9E-97 T 11-10-2018 AMK58_15180 9b3befab7ffa7b8d2fada11b8d4355bd 398 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 47 385 4.9E-80 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMK58_15180 9b3befab7ffa7b8d2fada11b8d4355bd 398 SUPERFAMILY SSF111369 61 309 2.62E-67 T 11-10-2018 AMK58_15180 9b3befab7ffa7b8d2fada11b8d4355bd 398 Gene3D G3DSA:1.10.287.470 106 179 1.9E-97 T 11-10-2018 AMK58_15180 9b3befab7ffa7b8d2fada11b8d4355bd 398 Gene3D G3DSA:2.40.30.170 60 314 1.9E-97 T 11-10-2018 AMK58_15180 9b3befab7ffa7b8d2fada11b8d4355bd 398 Pfam PF13533 Biotin-lipoyl like 73 118 1.6E-12 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain AMK58_06500 e165445d071c21fb5f9799cc50a11e63 645 SMART SM00382 188 327 1.2E-24 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_06500 e165445d071c21fb5f9799cc50a11e63 645 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 104 597 9.8E-239 T 11-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 AMK58_06500 e165445d071c21fb5f9799cc50a11e63 645 Gene3D G3DSA:3.40.50.300 144 324 2.3E-70 T 11-10-2018 AMK58_06500 e165445d071c21fb5f9799cc50a11e63 645 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 192 324 2.2E-45 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMK58_06500 e165445d071c21fb5f9799cc50a11e63 645 Gene3D G3DSA:1.10.8.60 326 400 2.2E-29 T 11-10-2018 AMK58_06500 e165445d071c21fb5f9799cc50a11e63 645 Pfam PF06480 FtsH Extracellular 9 88 1.1E-9 T 11-10-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 AMK58_06500 e165445d071c21fb5f9799cc50a11e63 645 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 6 608 37.673 T 11-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 AMK58_06500 e165445d071c21fb5f9799cc50a11e63 645 Pfam PF01434 Peptidase family M41 386 595 4.8E-80 T 11-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 AMK58_06500 e165445d071c21fb5f9799cc50a11e63 645 ProSitePatterns PS00674 AAA-protein family signature. 295 313 - T 11-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 AMK58_06500 e165445d071c21fb5f9799cc50a11e63 645 SUPERFAMILY SSF52540 146 395 7.71E-73 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_06500 e165445d071c21fb5f9799cc50a11e63 645 SUPERFAMILY SSF140990 406 606 3.92E-75 T 11-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 AMK58_06500 e165445d071c21fb5f9799cc50a11e63 645 Gene3D G3DSA:2.40.50.920 28 102 6.2E-8 T 11-10-2018 AMK58_06500 e165445d071c21fb5f9799cc50a11e63 645 Gene3D G3DSA:1.20.58.760 401 606 1.2E-73 T 11-10-2018 AMK58_03355 5a088b2a160fdb8732383cd61901c3fc 184 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 6 22 1.6E-17 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMK58_03355 5a088b2a160fdb8732383cd61901c3fc 184 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 22 33 1.6E-17 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMK58_03355 5a088b2a160fdb8732383cd61901c3fc 184 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 33 52 1.6E-17 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMK58_03355 5a088b2a160fdb8732383cd61901c3fc 184 Gene3D G3DSA:1.10.10.10 1 59 1.1E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_03355 5a088b2a160fdb8732383cd61901c3fc 184 SMART SM00344 6 115 3.6E-44 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMK58_03355 5a088b2a160fdb8732383cd61901c3fc 184 SUPERFAMILY SSF46785 5 66 3.63E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_03355 5a088b2a160fdb8732383cd61901c3fc 184 Pfam PF13412 Winged helix-turn-helix DNA-binding 6 53 1.8E-18 T 11-10-2018 AMK58_03355 5a088b2a160fdb8732383cd61901c3fc 184 Pfam PF01037 Lrp/AsnC ligand binding domain 74 145 2.7E-18 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMK58_03355 5a088b2a160fdb8732383cd61901c3fc 184 Gene3D G3DSA:3.30.70.920 60 143 1.5E-23 T 11-10-2018 AMK58_03355 5a088b2a160fdb8732383cd61901c3fc 184 SUPERFAMILY SSF54909 66 155 1.18E-18 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel AMK58_10885 9fcb3c0f3cc2aad59cc3088341b1c92e 155 Gene3D G3DSA:3.30.1330.40 1 154 1.8E-63 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMK58_10885 9fcb3c0f3cc2aad59cc3088341b1c92e 155 SUPERFAMILY SSF55298 4 154 4.56E-56 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMK58_10885 9fcb3c0f3cc2aad59cc3088341b1c92e 155 Pfam PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease 6 149 4.6E-40 T 11-10-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like AMK58_29155 2a0bc4d671224b8f3cfc2522fa04eb14 330 SUPERFAMILY SSF51735 1 275 3.96E-54 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_29155 2a0bc4d671224b8f3cfc2522fa04eb14 330 Gene3D G3DSA:3.90.25.30 170 313 2.5E-126 T 11-10-2018 AMK58_29155 2a0bc4d671224b8f3cfc2522fa04eb14 330 Gene3D G3DSA:3.40.50.720 5 309 2.5E-126 T 11-10-2018 AMK58_29155 2a0bc4d671224b8f3cfc2522fa04eb14 330 Pfam PF02719 Polysaccharide biosynthesis protein 7 283 4.9E-106 T 11-10-2018 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain AMK58_29155 2a0bc4d671224b8f3cfc2522fa04eb14 330 TIGRFAM TIGR03589 PseB: UDP-N-acetylglucosamine 4,6-dehydratase (inverting) 1 323 2.4E-159 T 11-10-2018 IPR020025 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) KEGG: 00520+4.2.1.115|MetaCyc: PWY-6143|MetaCyc: PWY-7330|MetaCyc: PWY-7331|MetaCyc: PWY-7332|MetaCyc: PWY-7719 AMK58_22555 c05edfc730d1c904b95e48e9021a2e23 1267 SUPERFAMILY SSF51126 508 849 2.92E-6 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor AMK58_22555 c05edfc730d1c904b95e48e9021a2e23 1267 SUPERFAMILY SSF103515 929 1266 8.24E-51 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily AMK58_22555 c05edfc730d1c904b95e48e9021a2e23 1267 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 753 1266 3.4E-31 T 11-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 AMK58_22555 c05edfc730d1c904b95e48e9021a2e23 1267 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 364 485 4.5E-10 T 11-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 AMK58_22555 c05edfc730d1c904b95e48e9021a2e23 1267 SMART SM00869 989 1257 1.4E-39 T 11-10-2018 IPR005546 Autotransporter beta-domain AMK58_22555 c05edfc730d1c904b95e48e9021a2e23 1267 SUPERFAMILY SSF51126 47 460 3.77E-18 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor AMK58_22555 c05edfc730d1c904b95e48e9021a2e23 1267 Gene3D G3DSA:2.40.128.130 974 1266 1.7E-54 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily AMK58_22555 c05edfc730d1c904b95e48e9021a2e23 1267 Pfam PF03797 Autotransporter beta-domain 992 1246 1.3E-53 T 11-10-2018 IPR005546 Autotransporter beta-domain AMK58_01225 a1582090054e2e24116e905b8b76ee12 316 PIRSF PIRSF006431 1 316 1.4E-129 T 11-10-2018 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 AMK58_01225 a1582090054e2e24116e905b8b76ee12 316 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 39 47 1.4E-12 T 11-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 AMK58_01225 a1582090054e2e24116e905b8b76ee12 316 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 108 122 1.4E-12 T 11-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 AMK58_01225 a1582090054e2e24116e905b8b76ee12 316 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 65 76 1.4E-12 T 11-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 AMK58_01225 a1582090054e2e24116e905b8b76ee12 316 TIGRFAM TIGR01249 pro_imino_pep_1: prolyl aminopeptidase 11 312 2.8E-117 T 11-10-2018 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 AMK58_01225 a1582090054e2e24116e905b8b76ee12 316 PRINTS PR00111 Alpha/beta hydrolase fold signature 62 77 3.2E-5 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_01225 a1582090054e2e24116e905b8b76ee12 316 PRINTS PR00111 Alpha/beta hydrolase fold signature 108 121 3.2E-5 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_01225 a1582090054e2e24116e905b8b76ee12 316 PRINTS PR00111 Alpha/beta hydrolase fold signature 122 135 3.2E-5 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_01225 a1582090054e2e24116e905b8b76ee12 316 Gene3D G3DSA:3.40.50.1820 3 315 2.0E-98 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_01225 a1582090054e2e24116e905b8b76ee12 316 Pfam PF00561 alpha/beta hydrolase fold 38 297 2.6E-27 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_01225 a1582090054e2e24116e905b8b76ee12 316 SUPERFAMILY SSF53474 5 299 8.51E-58 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_10375 add48225bd62769f63f7f08df7b82822 105 ProSitePatterns PS00050 Ribosomal protein L23 signature. 87 102 - T 11-10-2018 IPR001014 Ribosomal protein L23/L25, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10375 add48225bd62769f63f7f08df7b82822 105 Gene3D G3DSA:3.30.70.330 8 105 1.9E-34 T 11-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily AMK58_10375 add48225bd62769f63f7f08df7b82822 105 Pfam PF00276 Ribosomal protein L23 16 101 7.2E-34 T 11-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 AMK58_10375 add48225bd62769f63f7f08df7b82822 105 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 15 104 22.558 T 11-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 AMK58_10375 add48225bd62769f63f7f08df7b82822 105 SUPERFAMILY SSF54189 14 103 9.35E-34 T 11-10-2018 IPR012678 Ribosomal protein L23/L15e core domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_16540 5d71443338937fdf6945ae1fd8252def 272 SUPERFAMILY SSF48008 118 252 3.92E-24 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_16540 5d71443338937fdf6945ae1fd8252def 272 Pfam PF00392 Bacterial regulatory proteins, gntR family 51 111 4.3E-13 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_16540 5d71443338937fdf6945ae1fd8252def 272 Pfam PF07729 FCD domain 121 246 1.7E-18 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_16540 5d71443338937fdf6945ae1fd8252def 272 SUPERFAMILY SSF46785 51 115 8.69E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_16540 5d71443338937fdf6945ae1fd8252def 272 Gene3D G3DSA:1.20.120.530 114 257 1.3E-25 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_16540 5d71443338937fdf6945ae1fd8252def 272 SMART SM00895 121 247 1.3E-14 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_16540 5d71443338937fdf6945ae1fd8252def 272 SMART SM00345 53 111 6.3E-10 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_16540 5d71443338937fdf6945ae1fd8252def 272 Gene3D G3DSA:1.10.10.10 36 113 3.4E-16 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_20220 c0afd2019194265c915245c7cf4988d0 299 Gene3D G3DSA:3.40.190.10 165 266 2.0E-63 T 11-10-2018 AMK58_20220 c0afd2019194265c915245c7cf4988d0 299 SUPERFAMILY SSF53850 92 296 1.01E-41 T 11-10-2018 AMK58_20220 c0afd2019194265c915245c7cf4988d0 299 SUPERFAMILY SSF46785 8 114 7.86E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_20220 c0afd2019194265c915245c7cf4988d0 299 Pfam PF03466 LysR substrate binding domain 90 293 1.2E-39 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_20220 c0afd2019194265c915245c7cf4988d0 299 Gene3D G3DSA:1.10.10.10 5 91 2.2E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_20220 c0afd2019194265c915245c7cf4988d0 299 Gene3D G3DSA:3.40.190.10 94 290 2.0E-63 T 11-10-2018 AMK58_20220 c0afd2019194265c915245c7cf4988d0 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 65 1.4E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_21850 931d7df210e2f50455ead8d1d14357ff 196 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 21 167 4.9E-20 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMK58_21850 931d7df210e2f50455ead8d1d14357ff 196 Gene3D G3DSA:1.10.10.10 111 169 5.5E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_21850 931d7df210e2f50455ead8d1d14357ff 196 Pfam PF04542 Sigma-70 region 2 21 84 1.2E-15 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMK58_21850 931d7df210e2f50455ead8d1d14357ff 196 SUPERFAMILY SSF88659 108 167 4.71E-14 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMK58_21850 931d7df210e2f50455ead8d1d14357ff 196 SUPERFAMILY SSF88946 20 91 9.16E-19 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMK58_21850 931d7df210e2f50455ead8d1d14357ff 196 Gene3D G3DSA:1.10.1740.10 7 88 1.9E-20 T 11-10-2018 AMK58_21850 931d7df210e2f50455ead8d1d14357ff 196 Pfam PF08281 Sigma-70, region 4 115 164 1.2E-13 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMK58_11535 18e792265981ba902aa0f31f7e2386db 447 SUPERFAMILY SSF48163 283 442 1.02E-29 T 11-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AMK58_11535 18e792265981ba902aa0f31f7e2386db 447 Gene3D G3DSA:3.40.50.620 1 317 3.0E-103 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_11535 18e792265981ba902aa0f31f7e2386db 447 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 9 20 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMK58_11535 18e792265981ba902aa0f31f7e2386db 447 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 3 324 3.1E-94 T 11-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AMK58_11535 18e792265981ba902aa0f31f7e2386db 447 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 2 446 26.416 T 11-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AMK58_11535 18e792265981ba902aa0f31f7e2386db 447 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 3 307 4.3E-74 T 11-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 AMK58_11535 18e792265981ba902aa0f31f7e2386db 447 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 48 9.0E-24 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMK58_11535 18e792265981ba902aa0f31f7e2386db 447 PRINTS PR00987 Glutamyl-tRNA synthetase signature 182 192 9.0E-24 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMK58_11535 18e792265981ba902aa0f31f7e2386db 447 PRINTS PR00987 Glutamyl-tRNA synthetase signature 20 31 9.0E-24 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMK58_11535 18e792265981ba902aa0f31f7e2386db 447 PRINTS PR00987 Glutamyl-tRNA synthetase signature 6 18 9.0E-24 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMK58_11535 18e792265981ba902aa0f31f7e2386db 447 PRINTS PR00987 Glutamyl-tRNA synthetase signature 198 206 9.0E-24 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMK58_11535 18e792265981ba902aa0f31f7e2386db 447 Gene3D G3DSA:1.10.10.350 358 445 1.2E-16 T 11-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AMK58_11535 18e792265981ba902aa0f31f7e2386db 447 SUPERFAMILY SSF52374 3 299 2.15E-90 T 11-10-2018 AMK58_27685 b21559069a46d510ae8bb4dffaf3ed96 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 217 2.7E-18 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_27685 b21559069a46d510ae8bb4dffaf3ed96 224 SMART SM00448 1 112 2.5E-36 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_27685 b21559069a46d510ae8bb4dffaf3ed96 224 Gene3D G3DSA:1.10.10.10 122 222 1.9E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_27685 b21559069a46d510ae8bb4dffaf3ed96 224 SMART SM00862 145 218 2.6E-19 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_27685 b21559069a46d510ae8bb4dffaf3ed96 224 SUPERFAMILY SSF52172 1 175 1.25E-40 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_27685 b21559069a46d510ae8bb4dffaf3ed96 224 Pfam PF00072 Response regulator receiver domain 3 111 1.8E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_27685 b21559069a46d510ae8bb4dffaf3ed96 224 Gene3D G3DSA:3.40.50.2300 1 121 4.5E-36 T 11-10-2018 AMK58_04620 32e65ee70583b9295737014467c8d0bb 133 SUPERFAMILY SSF53146 1 118 1.16E-32 T 11-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily AMK58_04620 32e65ee70583b9295737014467c8d0bb 133 Gene3D G3DSA:3.30.420.130 1 119 1.6E-32 T 11-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily AMK58_04620 32e65ee70583b9295737014467c8d0bb 133 TIGRFAM TIGR02663 nifX: nitrogen fixation protein NifX 1 119 1.6E-48 T 11-10-2018 IPR013480 Nitrogen fixation protein NifX GO:0009399|GO:0051188|GO:0051540 AMK58_04620 32e65ee70583b9295737014467c8d0bb 133 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 11 104 1.1E-16 T 11-10-2018 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis AMK58_20655 d5e8dec19080d5b41c6d314aa2e80667 150 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 133 2.6E-36 T 11-10-2018 IPR000944 Transcription regulator Rrf2-type AMK58_20655 d5e8dec19080d5b41c6d314aa2e80667 150 Gene3D G3DSA:1.10.10.10 1 143 2.5E-43 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_20655 d5e8dec19080d5b41c6d314aa2e80667 150 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 48 66 - T 11-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site AMK58_20655 d5e8dec19080d5b41c6d314aa2e80667 150 Pfam PF02082 Transcriptional regulator 1 82 4.0E-27 T 11-10-2018 IPR000944 Transcription regulator Rrf2-type AMK58_20655 d5e8dec19080d5b41c6d314aa2e80667 150 SUPERFAMILY SSF46785 1 137 4.39E-34 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_23455 382a1c77382776def09a55dce34c6352 87 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 12 19 - T 11-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site AMK58_23455 382a1c77382776def09a55dce34c6352 87 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 3 80 1.3E-26 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like AMK58_23455 382a1c77382776def09a55dce34c6352 87 SUPERFAMILY SSF55594 2 87 1.83E-27 T 11-10-2018 IPR035895 HPr-like superfamily AMK58_23455 382a1c77382776def09a55dce34c6352 87 Gene3D G3DSA:3.30.1340.10 1 81 9.8E-29 T 11-10-2018 IPR035895 HPr-like superfamily AMK58_23455 382a1c77382776def09a55dce34c6352 87 Pfam PF00381 PTS HPr component phosphorylation site 3 81 2.1E-26 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like AMK58_23455 382a1c77382776def09a55dce34c6352 87 PRINTS PR00107 Phosphocarrier protein signature 37 52 3.2E-9 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like AMK58_23455 382a1c77382776def09a55dce34c6352 87 PRINTS PR00107 Phosphocarrier protein signature 12 28 3.2E-9 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like AMK58_23455 382a1c77382776def09a55dce34c6352 87 PRINTS PR00107 Phosphocarrier protein signature 52 69 3.2E-9 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like AMK58_20405 8b2f87f86014ef3f2a57ddb8fdcf2f51 201 Gene3D G3DSA:3.90.950.10 7 199 4.6E-57 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AMK58_20405 8b2f87f86014ef3f2a57ddb8fdcf2f51 201 PIRSF PIRSF006305 2 199 4.6E-46 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 AMK58_20405 8b2f87f86014ef3f2a57ddb8fdcf2f51 201 TIGRFAM TIGR00172 maf: septum formation protein Maf 7 194 1.2E-40 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 AMK58_20405 8b2f87f86014ef3f2a57ddb8fdcf2f51 201 Hamap MF_00528 Septum formation protein Maf [maf]. 8 200 29.67 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 AMK58_20405 8b2f87f86014ef3f2a57ddb8fdcf2f51 201 SUPERFAMILY SSF52972 6 194 5.36E-55 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AMK58_20405 8b2f87f86014ef3f2a57ddb8fdcf2f51 201 Pfam PF02545 Maf-like protein 8 194 3.8E-48 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 AMK58_14245 82dce560f70aeb3658517cebf5ec5298 159 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 5 120 5.6E-49 T 11-10-2018 IPR028973 PhnB-like AMK58_14245 82dce560f70aeb3658517cebf5ec5298 159 Gene3D G3DSA:3.10.180.70 1 159 1.1E-61 T 11-10-2018 AMK58_14245 82dce560f70aeb3658517cebf5ec5298 159 PIRSF PIRSF021700 1 159 3.2E-66 T 11-10-2018 IPR009725 Predicted 3-demethylubiquinone-9 3-methyltransferase AMK58_14245 82dce560f70aeb3658517cebf5ec5298 159 SUPERFAMILY SSF54593 5 157 6.83E-48 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMK58_06170 3d6f920f1c548a73283830211365eb72 508 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 7 489 7.0E-199 T 11-10-2018 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06170 3d6f920f1c548a73283830211365eb72 508 Pfam PF00361 Proton-conducting membrane transporter 135 419 1.1E-88 T 11-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06170 3d6f920f1c548a73283830211365eb72 508 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 240 264 4.3E-49 T 11-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06170 3d6f920f1c548a73283830211365eb72 508 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 328 347 4.3E-49 T 11-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06170 3d6f920f1c548a73283830211365eb72 508 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 141 160 4.3E-49 T 11-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06170 3d6f920f1c548a73283830211365eb72 508 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 171 195 4.3E-49 T 11-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06170 3d6f920f1c548a73283830211365eb72 508 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 380 406 4.3E-49 T 11-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06170 3d6f920f1c548a73283830211365eb72 508 Pfam PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus 78 130 2.9E-5 T 11-10-2018 IPR000260 NADH:ubiquinone oxidoreductase chain 4, N-terminal GO:0006120|GO:0055114 KEGG: 00190+1.6.5.3|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-5083|MetaCyc: PWY-6692|Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_24175 8184c88610c70d467c769af07aee0079 497 SUPERFAMILY SSF100950 225 494 2.85E-81 T 11-10-2018 IPR037171 NagB/RpiA transferase-like AMK58_24175 8184c88610c70d467c769af07aee0079 497 Gene3D G3DSA:3.40.1080.20 336 477 1.7E-37 T 11-10-2018 IPR038460 Acetyl-CoA hydrolase/transferase, C-terminal domain superfamily AMK58_24175 8184c88610c70d467c769af07aee0079 497 SUPERFAMILY SSF100950 3 222 2.29E-72 T 11-10-2018 IPR037171 NagB/RpiA transferase-like AMK58_24175 8184c88610c70d467c769af07aee0079 497 Pfam PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain 14 215 5.5E-30 T 11-10-2018 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 AMK58_24175 8184c88610c70d467c769af07aee0079 497 Pfam PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain 331 458 1.6E-38 T 11-10-2018 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain AMK58_24175 8184c88610c70d467c769af07aee0079 497 Gene3D G3DSA:3.30.750.70 255 321 2.2E-5 T 11-10-2018 AMK58_24175 8184c88610c70d467c769af07aee0079 497 TIGRFAM TIGR03458 YgfH_subfam: succinate CoA transferase 14 494 2.5E-224 T 11-10-2018 IPR017821 Succinate CoA transferase GO:0006084|GO:0016740 AMK58_24175 8184c88610c70d467c769af07aee0079 497 Gene3D G3DSA:3.40.1080.10 10 176 4.5E-14 T 11-10-2018 AMK58_03235 8bc7610994cf598b3191fbdaac6afd23 656 SUPERFAMILY SSF53300 237 435 3.02E-15 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMK58_03235 8bc7610994cf598b3191fbdaac6afd23 656 Pfam PF00092 von Willebrand factor type A domain 237 399 1.1E-6 T 11-10-2018 IPR002035 von Willebrand factor, type A AMK58_03235 8bc7610994cf598b3191fbdaac6afd23 656 Gene3D G3DSA:3.40.50.410 236 465 1.9E-11 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMK58_15450 7d82c2e01278a62033f0cbde6acf7957 190 PIRSF PIRSF029557 31 188 1.1E-57 T 11-10-2018 IPR010707 Protein of unknown function DUF1285 AMK58_15450 7d82c2e01278a62033f0cbde6acf7957 190 Gene3D G3DSA:2.30.270.10 89 158 3.1E-29 T 11-10-2018 IPR023361 DUF1285, beta-roll domain superfamily AMK58_15450 7d82c2e01278a62033f0cbde6acf7957 190 Pfam PF06938 Protein of unknown function (DUF1285) 37 182 3.4E-58 T 11-10-2018 IPR010707 Protein of unknown function DUF1285 AMK58_15450 7d82c2e01278a62033f0cbde6acf7957 190 Gene3D G3DSA:3.10.540.10 28 88 2.0E-22 T 11-10-2018 AMK58_11245 fcae1436eee8ba1dab7785d48b46e741 235 Gene3D G3DSA:3.30.70.2660 1 235 7.4E-93 T 11-10-2018 AMK58_11245 fcae1436eee8ba1dab7785d48b46e741 235 TIGRFAM TIGR02593 CRISPR_cas5: CRISPR-associated protein Cas5 5 46 3.5E-16 T 11-10-2018 IPR013422 CRISPR-associated protein Cas5, N-terminal AMK58_11245 fcae1436eee8ba1dab7785d48b46e741 235 PIRSF PIRSF029950 1 235 7.5E-83 T 11-10-2018 IPR010155 CRISPR pre-crRNA endoribonuclease Cas5d GO:0004519|GO:0051607 AMK58_11245 fcae1436eee8ba1dab7785d48b46e741 235 Pfam PF09704 CRISPR-associated protein (Cas_Cas5) 5 222 2.0E-39 T 11-10-2018 IPR021124 CRISPR-associated protein, Cas5 GO:0043571 AMK58_11245 fcae1436eee8ba1dab7785d48b46e741 235 TIGRFAM TIGR01876 cas_Cas5d: CRISPR-associated protein Cas5, subtype I-C/DVULG 7 234 4.0E-48 T 11-10-2018 IPR010155 CRISPR pre-crRNA endoribonuclease Cas5d GO:0004519|GO:0051607 AMK58_24460 af0cf1e527924620d910de3a8ee01f02 149 TIGRFAM TIGR01068 thioredoxin: thioredoxin 47 144 3.6E-32 T 11-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AMK58_24460 af0cf1e527924620d910de3a8ee01f02 149 SUPERFAMILY SSF52833 30 146 5.63E-35 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_24460 af0cf1e527924620d910de3a8ee01f02 149 ProSitePatterns PS00194 Thioredoxin family active site. 63 81 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AMK58_24460 af0cf1e527924620d910de3a8ee01f02 149 PIRSF PIRSF000077 40 146 1.0E-31 T 11-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AMK58_24460 af0cf1e527924620d910de3a8ee01f02 149 Gene3D G3DSA:2.20.28.140 2 38 5.4E-10 T 11-10-2018 AMK58_24460 af0cf1e527924620d910de3a8ee01f02 149 Pfam PF00085 Thioredoxin 44 143 1.9E-26 T 11-10-2018 IPR013766 Thioredoxin domain GO:0045454 AMK58_24460 af0cf1e527924620d910de3a8ee01f02 149 PRINTS PR00421 Thioredoxin family signature 62 70 2.1E-7 T 11-10-2018 AMK58_24460 af0cf1e527924620d910de3a8ee01f02 149 PRINTS PR00421 Thioredoxin family signature 70 79 2.1E-7 T 11-10-2018 AMK58_24460 af0cf1e527924620d910de3a8ee01f02 149 PRINTS PR00421 Thioredoxin family signature 110 121 2.1E-7 T 11-10-2018 AMK58_24460 af0cf1e527924620d910de3a8ee01f02 149 Gene3D G3DSA:3.40.30.10 39 149 4.1E-30 T 11-10-2018 AMK58_17455 e2d601accfd4ae408117f1bcd6d31a01 106 Pfam PF01906 Putative heavy-metal-binding 1 104 1.5E-37 T 11-10-2018 IPR002765 Uncharacterised protein family UPF0145 AMK58_17455 e2d601accfd4ae408117f1bcd6d31a01 106 Gene3D G3DSA:3.30.110.70 2 106 3.6E-40 T 11-10-2018 AMK58_17455 e2d601accfd4ae408117f1bcd6d31a01 106 Hamap MF_00338 UPF0145 protein YbjQ [ybjQ]. 1 105 24.306 T 11-10-2018 IPR002765 Uncharacterised protein family UPF0145 AMK58_17455 e2d601accfd4ae408117f1bcd6d31a01 106 SUPERFAMILY SSF117782 1 105 3.14E-35 T 11-10-2018 IPR035439 UPF0145 domain superfamily AMK58_21965 617384978f5f7f5a335b94346ad93f26 937 Gene3D G3DSA:2.60.60.40 602 714 9.2E-10 T 11-10-2018 AMK58_21965 617384978f5f7f5a335b94346ad93f26 937 Gene3D G3DSA:2.60.60.40 739 850 3.5E-8 T 11-10-2018 AMK58_21965 617384978f5f7f5a335b94346ad93f26 937 SUPERFAMILY SSF51126 19 462 2.66E-25 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor AMK58_21965 617384978f5f7f5a335b94346ad93f26 937 Pfam PF16841 Ca-dependent carbohydrate-binding module xylan-binding 742 833 6.4E-30 T 11-10-2018 IPR031768 Carbohydrate binding module, xylan-binding domain MetaCyc: PWY-6717|MetaCyc: PWY-6784 AMK58_21965 617384978f5f7f5a335b94346ad93f26 937 Pfam PF16841 Ca-dependent carbohydrate-binding module xylan-binding 605 696 3.4E-30 T 11-10-2018 IPR031768 Carbohydrate binding module, xylan-binding domain MetaCyc: PWY-6717|MetaCyc: PWY-6784 AMK58_21965 617384978f5f7f5a335b94346ad93f26 937 Pfam PF13229 Right handed beta helix region 189 358 1.8E-13 T 11-10-2018 IPR039448 Right handed beta helix domain AMK58_21965 617384978f5f7f5a335b94346ad93f26 937 Gene3D G3DSA:2.160.20.10 22 433 7.8E-22 T 11-10-2018 IPR012334 Pectin lyase fold AMK58_28020 6f1f7609d2e1c7566676bfcd62e2f131 383 SUPERFAMILY SSF53901 5 369 3.22E-40 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_28020 6f1f7609d2e1c7566676bfcd62e2f131 383 ProSitePatterns PS00737 Thiolases signature 2. 317 333 - T 11-10-2018 IPR020613 Thiolase, conserved site GO:0016747 AMK58_28020 6f1f7609d2e1c7566676bfcd62e2f131 383 Pfam PF00108 Thiolase, N-terminal domain 5 216 7.3E-18 T 11-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 AMK58_28020 6f1f7609d2e1c7566676bfcd62e2f131 383 Pfam PF02803 Thiolase, C-terminal domain 257 367 3.9E-10 T 11-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 AMK58_28020 6f1f7609d2e1c7566676bfcd62e2f131 383 Gene3D G3DSA:3.40.47.10 4 382 2.6E-111 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_28020 6f1f7609d2e1c7566676bfcd62e2f131 383 PIRSF PIRSF000429 1 372 9.5E-58 T 11-10-2018 IPR002155 Thiolase GO:0016747 AMK58_05615 bb7f7ce2971fb1c1aa71fe2187fe46f1 298 SUPERFAMILY SSF103481 53 153 1.14E-15 T 11-10-2018 AMK58_05615 bb7f7ce2971fb1c1aa71fe2187fe46f1 298 Pfam PF00892 EamA-like transporter family 160 289 1.9E-8 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_05615 bb7f7ce2971fb1c1aa71fe2187fe46f1 298 Pfam PF00892 EamA-like transporter family 22 150 1.6E-13 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_05615 bb7f7ce2971fb1c1aa71fe2187fe46f1 298 SUPERFAMILY SSF103481 194 292 4.71E-14 T 11-10-2018 AMK58_23290 c69083c10ed62b0462622c09bf69620c 220 SUPERFAMILY SSF53335 9 220 7.19E-49 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_23290 c69083c10ed62b0462622c09bf69620c 220 Gene3D G3DSA:3.40.50.150 2 220 7.5E-75 T 11-10-2018 AMK58_23290 c69083c10ed62b0462622c09bf69620c 220 Pfam PF01596 O-methyltransferase 22 219 2.4E-66 T 11-10-2018 IPR002935 O-methyltransferase, family 3 GO:0008171 AMK58_12005 bfa9dd9c87173a78a52dc2db345dbc7d 514 Gene3D G3DSA:1.10.150.20 184 233 9.5E-10 T 11-10-2018 AMK58_12005 bfa9dd9c87173a78a52dc2db345dbc7d 514 SUPERFAMILY SSF56672 11 242 7.12E-46 T 11-10-2018 AMK58_12005 bfa9dd9c87173a78a52dc2db345dbc7d 514 Gene3D G3DSA:3.30.70.270 83 183 9.5E-10 T 11-10-2018 AMK58_12005 bfa9dd9c87173a78a52dc2db345dbc7d 514 Pfam PF00817 impB/mucB/samB family 28 158 1.6E-10 T 11-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AMK58_12005 bfa9dd9c87173a78a52dc2db345dbc7d 514 Gene3D G3DSA:2.30.40.20 46 82 9.5E-10 T 11-10-2018 AMK58_09125 60a54c2499eda42fd2e603171adc4c4c 243 Pfam PF00486 Transcriptional regulatory protein, C terminal 162 236 1.1E-14 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_09125 60a54c2499eda42fd2e603171adc4c4c 243 Pfam PF00072 Response regulator receiver domain 6 113 2.4E-21 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_09125 60a54c2499eda42fd2e603171adc4c4c 243 Gene3D G3DSA:3.40.50.2300 1 128 3.8E-29 T 11-10-2018 AMK58_09125 60a54c2499eda42fd2e603171adc4c4c 243 Gene3D G3DSA:1.10.10.10 131 240 7.4E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_09125 60a54c2499eda42fd2e603171adc4c4c 243 SUPERFAMILY SSF46894 140 238 7.65E-17 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMK58_09125 60a54c2499eda42fd2e603171adc4c4c 243 SMART SM00448 4 114 8.2E-31 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_09125 60a54c2499eda42fd2e603171adc4c4c 243 SUPERFAMILY SSF52172 4 125 8.54E-33 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_09125 60a54c2499eda42fd2e603171adc4c4c 243 SMART SM00862 160 236 1.6E-13 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_12085 261044bee09db73c754f98a8ea960720 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 3.2E-24 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_12085 261044bee09db73c754f98a8ea960720 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 7.5E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_12085 261044bee09db73c754f98a8ea960720 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 7.5E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_12085 261044bee09db73c754f98a8ea960720 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 7.5E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_12085 261044bee09db73c754f98a8ea960720 296 Gene3D G3DSA:3.40.190.290 90 291 1.0E-49 T 11-10-2018 AMK58_12085 261044bee09db73c754f98a8ea960720 296 SUPERFAMILY SSF46785 1 111 3.98E-26 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_12085 261044bee09db73c754f98a8ea960720 296 Gene3D G3DSA:1.10.10.10 1 85 2.5E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_12085 261044bee09db73c754f98a8ea960720 296 SUPERFAMILY SSF53850 88 293 2.9E-41 T 11-10-2018 AMK58_12085 261044bee09db73c754f98a8ea960720 296 Pfam PF03466 LysR substrate binding domain 87 290 1.2E-37 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_11610 41aa557e57041121594bb2425cfbe338 451 SUPERFAMILY SSF55073 13 130 2.12E-6 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_11610 41aa557e57041121594bb2425cfbe338 451 Gene3D G3DSA:3.30.70.270 11 160 5.6E-8 T 11-10-2018 AMK58_26485 d98b18b54267917b2a64c821d2551ea6 1050 SUPERFAMILY SSF82693 673 857 1.39E-29 T 11-10-2018 AMK58_26485 d98b18b54267917b2a64c821d2551ea6 1050 SUPERFAMILY SSF82693 135 330 9.42E-28 T 11-10-2018 AMK58_26485 d98b18b54267917b2a64c821d2551ea6 1050 SUPERFAMILY SSF82866 832 1027 4.45E-46 T 11-10-2018 AMK58_26485 d98b18b54267917b2a64c821d2551ea6 1050 SUPERFAMILY SSF82866 296 497 4.71E-49 T 11-10-2018 AMK58_26485 d98b18b54267917b2a64c821d2551ea6 1050 Gene3D G3DSA:3.30.2090.10 179 275 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_26485 d98b18b54267917b2a64c821d2551ea6 1050 SUPERFAMILY SSF82714 183 272 3.66E-21 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_26485 d98b18b54267917b2a64c821d2551ea6 1050 Gene3D G3DSA:3.30.70.1430 38 818 0.0 T 11-10-2018 AMK58_26485 d98b18b54267917b2a64c821d2551ea6 1050 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 8.3E-112 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_26485 d98b18b54267917b2a64c821d2551ea6 1050 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 8.3E-112 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_26485 d98b18b54267917b2a64c821d2551ea6 1050 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 8.3E-112 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_26485 d98b18b54267917b2a64c821d2551ea6 1050 PRINTS PR00702 Acriflavin resistance protein family signature 553 570 8.3E-112 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_26485 d98b18b54267917b2a64c821d2551ea6 1050 PRINTS PR00702 Acriflavin resistance protein family signature 622 636 8.3E-112 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_26485 d98b18b54267917b2a64c821d2551ea6 1050 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 8.3E-112 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_26485 d98b18b54267917b2a64c821d2551ea6 1050 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 8.3E-112 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_26485 d98b18b54267917b2a64c821d2551ea6 1050 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 8.3E-112 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_26485 d98b18b54267917b2a64c821d2551ea6 1050 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 8.3E-112 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_26485 d98b18b54267917b2a64c821d2551ea6 1050 Gene3D G3DSA:3.30.70.1440 670 866 0.0 T 11-10-2018 AMK58_26485 d98b18b54267917b2a64c821d2551ea6 1050 Gene3D G3DSA:3.30.70.1430 568 669 0.0 T 11-10-2018 AMK58_26485 d98b18b54267917b2a64c821d2551ea6 1050 SUPERFAMILY SSF82693 566 672 3.14E-30 T 11-10-2018 AMK58_26485 d98b18b54267917b2a64c821d2551ea6 1050 Gene3D G3DSA:1.20.1640.10 514 1023 0.0 T 11-10-2018 AMK58_26485 d98b18b54267917b2a64c821d2551ea6 1050 SUPERFAMILY SSF82693 38 131 9.68E-26 T 11-10-2018 AMK58_26485 d98b18b54267917b2a64c821d2551ea6 1050 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1037 0.0 T 11-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 AMK58_26485 d98b18b54267917b2a64c821d2551ea6 1050 Gene3D G3DSA:3.30.70.1320 133 332 0.0 T 11-10-2018 AMK58_26485 d98b18b54267917b2a64c821d2551ea6 1050 Gene3D G3DSA:1.20.1640.10 8 513 0.0 T 11-10-2018 AMK58_26485 d98b18b54267917b2a64c821d2551ea6 1050 Gene3D G3DSA:3.30.2090.10 722 810 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_26485 d98b18b54267917b2a64c821d2551ea6 1050 Pfam PF00873 AcrB/AcrD/AcrF family 1 1026 0.0 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_26485 d98b18b54267917b2a64c821d2551ea6 1050 SUPERFAMILY SSF82714 723 810 5.75E-21 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_25890 cdde5a1d10f567f449fcea8d024d7dd0 342 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 14 24 3.8E-5 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMK58_25890 cdde5a1d10f567f449fcea8d024d7dd0 342 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 24 34 3.8E-5 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMK58_25890 cdde5a1d10f567f449fcea8d024d7dd0 342 ProSitePatterns PS00356 LacI-type HTH domain signature. 15 33 - T 11-10-2018 AMK58_25890 cdde5a1d10f567f449fcea8d024d7dd0 342 SUPERFAMILY SSF47413 12 69 1.69E-14 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMK58_25890 cdde5a1d10f567f449fcea8d024d7dd0 342 SUPERFAMILY SSF53822 69 326 1.16E-67 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMK58_25890 cdde5a1d10f567f449fcea8d024d7dd0 342 Gene3D G3DSA:1.10.260.40 5 69 1.1E-19 T 11-10-2018 AMK58_25890 cdde5a1d10f567f449fcea8d024d7dd0 342 Pfam PF13377 Periplasmic binding protein-like domain 177 338 1.1E-37 T 11-10-2018 AMK58_25890 cdde5a1d10f567f449fcea8d024d7dd0 342 SMART SM00354 12 81 2.5E-27 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMK58_25890 cdde5a1d10f567f449fcea8d024d7dd0 342 Pfam PF00356 Bacterial regulatory proteins, lacI family 15 58 4.1E-15 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMK58_25890 cdde5a1d10f567f449fcea8d024d7dd0 342 Gene3D G3DSA:3.40.50.2300 169 335 3.4E-78 T 11-10-2018 AMK58_25890 cdde5a1d10f567f449fcea8d024d7dd0 342 Gene3D G3DSA:3.40.50.2300 72 330 3.4E-78 T 11-10-2018 AMK58_23305 0862b2821f7778c43e99d1ab084c5c5d 441 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 8 22 - T 11-10-2018 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site AMK58_23305 0862b2821f7778c43e99d1ab084c5c5d 441 PRINTS PR00131 Glycosyl hydrolase family 1 signature 384 401 8.3E-19 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMK58_23305 0862b2821f7778c43e99d1ab084c5c5d 441 PRINTS PR00131 Glycosyl hydrolase family 1 signature 280 294 8.3E-19 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMK58_23305 0862b2821f7778c43e99d1ab084c5c5d 441 PRINTS PR00131 Glycosyl hydrolase family 1 signature 408 420 8.3E-19 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMK58_23305 0862b2821f7778c43e99d1ab084c5c5d 441 PRINTS PR00131 Glycosyl hydrolase family 1 signature 363 374 8.3E-19 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMK58_23305 0862b2821f7778c43e99d1ab084c5c5d 441 PRINTS PR00131 Glycosyl hydrolase family 1 signature 342 350 8.3E-19 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMK58_23305 0862b2821f7778c43e99d1ab084c5c5d 441 Pfam PF00232 Glycosyl hydrolase family 1 3 436 6.3E-148 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMK58_23305 0862b2821f7778c43e99d1ab084c5c5d 441 Gene3D G3DSA:3.20.20.80 1 440 9.6E-161 T 11-10-2018 AMK58_23305 0862b2821f7778c43e99d1ab084c5c5d 441 SUPERFAMILY SSF51445 3 436 1.51E-155 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily AMK58_23305 0862b2821f7778c43e99d1ab084c5c5d 441 TIGRFAM TIGR03356 BGL: beta-galactosidase 5 430 2.3E-168 T 11-10-2018 IPR017736 Glycoside hydrolase, family 1, beta-glucosidase GO:0008422|GO:0030245 KEGG: 00460+3.2.1.21|KEGG: 00500+3.2.1.21|KEGG: 00940+3.2.1.21|MetaCyc: PWY-3121|MetaCyc: PWY-5176|MetaCyc: PWY-6002|MetaCyc: PWY-6788|MetaCyc: PWY-7091|MetaCyc: PWY-7092|MetaCyc: PWY-7913 AMK58_02330 37152a8417bce74c4d6a29627caff964 260 Gene3D G3DSA:3.30.565.10 114 260 9.2E-16 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_02330 37152a8417bce74c4d6a29627caff964 260 Pfam PF13581 Histidine kinase-like ATPase domain 122 257 1.4E-15 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_02330 37152a8417bce74c4d6a29627caff964 260 SUPERFAMILY SSF55874 138 247 2.88E-6 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_01825 0cbebf0c8f4594a3a53e7ae6a8f141d9 561 Pfam PF01935 Domain of unknown function DUF87 139 414 9.0E-48 T 11-10-2018 IPR002789 Helicase HerA, central domain AMK58_01825 0cbebf0c8f4594a3a53e7ae6a8f141d9 561 SUPERFAMILY SSF52540 139 538 4.98E-42 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_01825 0cbebf0c8f4594a3a53e7ae6a8f141d9 561 Gene3D G3DSA:3.40.50.300 369 552 3.7E-46 T 11-10-2018 AMK58_01825 0cbebf0c8f4594a3a53e7ae6a8f141d9 561 Gene3D G3DSA:3.40.50.300 126 295 4.4E-21 T 11-10-2018 AMK58_28660 87773e8cf9ccce3229d49376f1b959be 211 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 6 172 9.9E-8 T 11-10-2018 IPR013830 SGNH hydrolase-type esterase domain AMK58_28660 87773e8cf9ccce3229d49376f1b959be 211 SUPERFAMILY SSF52266 2 194 8.16E-13 T 11-10-2018 AMK58_28660 87773e8cf9ccce3229d49376f1b959be 211 Gene3D G3DSA:3.40.50.1110 1 195 1.2E-9 T 11-10-2018 IPR036514 SGNH hydrolase superfamily AMK58_02560 e8402d60831929b8f58573481e2ea370 974 Gene3D G3DSA:1.10.287.1150 113 193 4.3E-23 T 11-10-2018 AMK58_02560 e8402d60831929b8f58573481e2ea370 974 SUPERFAMILY SSF52518 609 826 1.28E-49 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMK58_02560 e8402d60831929b8f58573481e2ea370 974 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 112 971 0.0 T 11-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AMK58_02560 e8402d60831929b8f58573481e2ea370 974 Pfam PF00676 Dehydrogenase E1 component 239 556 1.3E-57 T 11-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 AMK58_02560 e8402d60831929b8f58573481e2ea370 974 Gene3D G3DSA:3.40.50.970 194 561 3.7E-155 T 11-10-2018 AMK58_02560 e8402d60831929b8f58573481e2ea370 974 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 8 47 1.6E-17 T 11-10-2018 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AMK58_02560 e8402d60831929b8f58573481e2ea370 974 Gene3D G3DSA:3.40.50.11610 756 968 7.8E-171 T 11-10-2018 AMK58_02560 e8402d60831929b8f58573481e2ea370 974 Pfam PF02779 Transketolase, pyrimidine binding domain 625 820 1.6E-64 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMK58_02560 e8402d60831929b8f58573481e2ea370 974 PIRSF PIRSF000157 1 973 0.0 T 11-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AMK58_02560 e8402d60831929b8f58573481e2ea370 974 Gene3D G3DSA:3.40.50.12470 589 836 7.8E-171 T 11-10-2018 AMK58_02560 e8402d60831929b8f58573481e2ea370 974 SUPERFAMILY SSF52518 148 572 8.1E-92 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMK58_02560 e8402d60831929b8f58573481e2ea370 974 SMART SM00861 626 819 3.4E-62 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMK58_02560 e8402d60831929b8f58573481e2ea370 974 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 823 971 5.3E-56 T 11-10-2018 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AMK58_16525 cc0db71aef855a684045e6df7dc25841 307 Gene3D G3DSA:1.10.3720.10 34 305 7.1E-45 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_16525 cc0db71aef855a684045e6df7dc25841 307 SUPERFAMILY SSF161098 41 295 8.69E-50 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_16525 cc0db71aef855a684045e6df7dc25841 307 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 126 297 1.4E-10 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_19430 46e7994ce9ca1dd7553bfcb6d9733508 777 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 6 189 3.7E-42 T 11-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 AMK58_19430 46e7994ce9ca1dd7553bfcb6d9733508 777 Pfam PF00378 Enoyl-CoA hydratase/isomerase 470 613 2.3E-10 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMK58_19430 46e7994ce9ca1dd7553bfcb6d9733508 777 SUPERFAMILY SSF52096 463 774 5.36E-38 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMK58_19430 46e7994ce9ca1dd7553bfcb6d9733508 777 Gene3D G3DSA:3.90.226.10 468 689 2.2E-29 T 11-10-2018 AMK58_19430 46e7994ce9ca1dd7553bfcb6d9733508 777 SUPERFAMILY SSF48179 190 301 6.8E-21 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMK58_19430 46e7994ce9ca1dd7553bfcb6d9733508 777 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 191 292 3.8E-16 T 11-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 AMK58_19430 46e7994ce9ca1dd7553bfcb6d9733508 777 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 343 398 9.8E-5 T 11-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 AMK58_19430 46e7994ce9ca1dd7553bfcb6d9733508 777 Gene3D G3DSA:1.10.1040.10 344 403 1.0E-5 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMK58_19430 46e7994ce9ca1dd7553bfcb6d9733508 777 SUPERFAMILY SSF51735 1 190 7.12E-42 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_19430 46e7994ce9ca1dd7553bfcb6d9733508 777 Gene3D G3DSA:1.10.1040.10 193 317 1.9E-22 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMK58_19430 46e7994ce9ca1dd7553bfcb6d9733508 777 SUPERFAMILY SSF48179 341 430 3.74E-14 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMK58_19430 46e7994ce9ca1dd7553bfcb6d9733508 777 Gene3D G3DSA:3.40.50.720 1 192 8.7E-57 T 11-10-2018 AMK58_02500 00f196c7f0ab0b75e64a9ae13d728303 203 Gene3D G3DSA:3.20.19.10 1 175 1.1E-76 T 11-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 AMK58_02500 00f196c7f0ab0b75e64a9ae13d728303 203 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 184 3.2E-79 T 11-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 AMK58_02500 00f196c7f0ab0b75e64a9ae13d728303 203 SUPERFAMILY SSF52016 1 191 5.3E-59 T 11-10-2018 AMK58_02500 00f196c7f0ab0b75e64a9ae13d728303 203 Pfam PF00694 Aconitase C-terminal domain 1 123 2.0E-38 T 11-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 AMK58_02500 00f196c7f0ab0b75e64a9ae13d728303 203 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 201 42.089 T 11-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 AMK58_02420 cc548c7e9ed4f92b32d62338d1338f52 929 Gene3D G3DSA:1.10.287.130 664 748 7.6E-25 T 11-10-2018 AMK58_02420 cc548c7e9ed4f92b32d62338d1338f52 929 Gene3D G3DSA:1.20.1730.10 30 489 3.7E-15 T 11-10-2018 IPR038377 Sodium/glucose symporter superfamily AMK58_02420 cc548c7e9ed4f92b32d62338d1338f52 929 PRINTS PR00344 Bacterial sensor protein C-terminal signature 889 902 3.5E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_02420 cc548c7e9ed4f92b32d62338d1338f52 929 PRINTS PR00344 Bacterial sensor protein C-terminal signature 830 844 3.5E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_02420 cc548c7e9ed4f92b32d62338d1338f52 929 PRINTS PR00344 Bacterial sensor protein C-terminal signature 865 883 3.5E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_02420 cc548c7e9ed4f92b32d62338d1338f52 929 Gene3D G3DSA:3.30.565.10 749 908 8.8E-45 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_02420 cc548c7e9ed4f92b32d62338d1338f52 929 SMART SM00388 680 747 5.4E-21 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_02420 cc548c7e9ed4f92b32d62338d1338f52 929 SUPERFAMILY SSF55874 736 904 3.54E-47 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_02420 cc548c7e9ed4f92b32d62338d1338f52 929 SMART SM00387 793 905 3.5E-36 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_02420 cc548c7e9ed4f92b32d62338d1338f52 929 Pfam PF00512 His Kinase A (phospho-acceptor) domain 681 747 2.3E-17 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_02420 cc548c7e9ed4f92b32d62338d1338f52 929 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 793 904 3.5E-26 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_02420 cc548c7e9ed4f92b32d62338d1338f52 929 SUPERFAMILY SSF47384 665 748 1.59E-20 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_14265 5519ff8fbf68e2cc1e57e4ddd27c7fce 717 Gene3D G3DSA:2.40.170.20 189 717 3.8E-119 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily AMK58_14265 5519ff8fbf68e2cc1e57e4ddd27c7fce 717 SUPERFAMILY SSF56935 28 717 1.74E-135 T 11-10-2018 AMK58_14265 5519ff8fbf68e2cc1e57e4ddd27c7fce 717 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 78 715 1.1E-108 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 AMK58_14265 5519ff8fbf68e2cc1e57e4ddd27c7fce 717 Gene3D G3DSA:2.170.130.10 52 188 2.6E-41 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily AMK58_14265 5519ff8fbf68e2cc1e57e4ddd27c7fce 717 Pfam PF00593 TonB dependent receptor 251 716 1.8E-56 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel AMK58_14265 5519ff8fbf68e2cc1e57e4ddd27c7fce 717 Pfam PF07715 TonB-dependent Receptor Plug Domain 76 177 6.6E-25 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain AMK58_14240 94839fca1c99e1a4f33e447a4af01fa5 206 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 33 49 8.1E-7 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_14240 94839fca1c99e1a4f33e447a4af01fa5 206 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 19 33 8.1E-7 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_14240 94839fca1c99e1a4f33e447a4af01fa5 206 SMART SM00895 69 193 9.6E-15 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_14240 94839fca1c99e1a4f33e447a4af01fa5 206 SUPERFAMILY SSF48008 65 201 9.15E-23 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_14240 94839fca1c99e1a4f33e447a4af01fa5 206 Gene3D G3DSA:1.20.120.530 62 205 4.1E-27 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_14240 94839fca1c99e1a4f33e447a4af01fa5 206 Pfam PF07729 FCD domain 69 192 1.4E-24 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_14240 94839fca1c99e1a4f33e447a4af01fa5 206 Gene3D G3DSA:1.10.10.10 1 59 2.4E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_14240 94839fca1c99e1a4f33e447a4af01fa5 206 SUPERFAMILY SSF46785 1 63 3.38E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_14240 94839fca1c99e1a4f33e447a4af01fa5 206 SMART SM00345 1 59 9.7E-17 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_14240 94839fca1c99e1a4f33e447a4af01fa5 206 Pfam PF00392 Bacterial regulatory proteins, gntR family 1 59 1.0E-18 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_09450 01ea8718521716de95dcc285991f4f22 694 Pfam PF11412 Disulphide bond corrector protein DsbC 51 150 2.7E-17 T 11-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain AMK58_09450 01ea8718521716de95dcc285991f4f22 694 Pfam PF13899 Thioredoxin-like 582 664 3.5E-11 T 11-10-2018 AMK58_09450 01ea8718521716de95dcc285991f4f22 694 Gene3D G3DSA:3.40.30.10 570 682 5.7E-10 T 11-10-2018 AMK58_09450 01ea8718521716de95dcc285991f4f22 694 SUPERFAMILY SSF52833 577 685 9.26E-12 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_12350 a4021f30d160b0378bca4bad5edf743a 451 Gene3D G3DSA:3.40.50.720 203 448 6.8E-46 T 11-10-2018 AMK58_12350 a4021f30d160b0378bca4bad5edf743a 451 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 10 419 5.0E-102 T 11-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 AMK58_12350 a4021f30d160b0378bca4bad5edf743a 451 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 203 293 1.9E-21 T 11-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AMK58_12350 a4021f30d160b0378bca4bad5edf743a 451 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 10 178 3.1E-39 T 11-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AMK58_12350 a4021f30d160b0378bca4bad5edf743a 451 PIRSF PIRSF000124 9 441 2.2E-63 T 11-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 AMK58_12350 a4021f30d160b0378bca4bad5edf743a 451 PIRSF PIRSF500136 3 437 6.6E-94 T 11-10-2018 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 AMK58_12350 a4021f30d160b0378bca4bad5edf743a 451 SUPERFAMILY SSF51735 9 196 9.42E-37 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_12350 a4021f30d160b0378bca4bad5edf743a 451 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 321 423 3.3E-13 T 11-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AMK58_12350 a4021f30d160b0378bca4bad5edf743a 451 SUPERFAMILY SSF52413 315 425 3.14E-11 T 11-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 AMK58_12350 a4021f30d160b0378bca4bad5edf743a 451 Gene3D G3DSA:3.40.50.720 3 200 8.2E-58 T 11-10-2018 AMK58_12350 a4021f30d160b0378bca4bad5edf743a 451 SMART SM00984 320 425 3.2E-13 T 11-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AMK58_12350 a4021f30d160b0378bca4bad5edf743a 451 SUPERFAMILY SSF48179 203 295 6.29E-20 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMK58_03220 f53f0de0e21ef2213b153bcf3b9af617 529 Pfam PF03781 Sulfatase-modifying factor enzyme 1 113 323 2.9E-30 T 11-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 AMK58_03220 f53f0de0e21ef2213b153bcf3b9af617 529 Gene3D G3DSA:3.90.1580.10 92 325 9.4E-33 T 11-10-2018 AMK58_03220 f53f0de0e21ef2213b153bcf3b9af617 529 SUPERFAMILY SSF56436 111 324 8.95E-34 T 11-10-2018 IPR016187 C-type lectin fold AMK58_14610 1088e65f0061cffae3fa4d475420c25a 144 Pfam PF00072 Response regulator receiver domain 20 136 4.5E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_14610 1088e65f0061cffae3fa4d475420c25a 144 SMART SM00448 18 136 5.9E-35 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_14610 1088e65f0061cffae3fa4d475420c25a 144 SUPERFAMILY SSF52172 16 141 2.42E-36 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_14610 1088e65f0061cffae3fa4d475420c25a 144 Gene3D G3DSA:3.40.50.2300 10 142 7.3E-34 T 11-10-2018 AMK58_13250 44fb509371c42e063db917f8a3f25601 650 SUPERFAMILY SSF55874 471 640 4.71E-39 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_13250 44fb509371c42e063db917f8a3f25601 650 Pfam PF12860 PAS fold 285 398 6.6E-22 T 11-10-2018 AMK58_13250 44fb509371c42e063db917f8a3f25601 650 Gene3D G3DSA:1.10.287.130 404 482 8.0E-22 T 11-10-2018 AMK58_13250 44fb509371c42e063db917f8a3f25601 650 SMART SM00388 414 482 9.1E-18 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_13250 44fb509371c42e063db917f8a3f25601 650 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 529 639 7.5E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_13250 44fb509371c42e063db917f8a3f25601 650 SUPERFAMILY SSF47384 401 483 2.75E-21 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_13250 44fb509371c42e063db917f8a3f25601 650 SMART SM00387 528 642 6.2E-31 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_13250 44fb509371c42e063db917f8a3f25601 650 PRINTS PR00344 Bacterial sensor protein C-terminal signature 602 620 2.0E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_13250 44fb509371c42e063db917f8a3f25601 650 PRINTS PR00344 Bacterial sensor protein C-terminal signature 567 581 2.0E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_13250 44fb509371c42e063db917f8a3f25601 650 PRINTS PR00344 Bacterial sensor protein C-terminal signature 626 639 2.0E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_13250 44fb509371c42e063db917f8a3f25601 650 Pfam PF08448 PAS fold 171 267 4.7E-6 T 11-10-2018 IPR013656 PAS fold-4 AMK58_13250 44fb509371c42e063db917f8a3f25601 650 SUPERFAMILY SSF55785 263 392 5.02E-8 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_13250 44fb509371c42e063db917f8a3f25601 650 Pfam PF00512 His Kinase A (phospho-acceptor) domain 415 482 5.0E-16 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_13250 44fb509371c42e063db917f8a3f25601 650 Gene3D G3DSA:3.30.565.10 483 641 5.3E-37 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_13250 44fb509371c42e063db917f8a3f25601 650 Gene3D G3DSA:3.30.450.20 276 403 2.8E-6 T 11-10-2018 AMK58_13250 44fb509371c42e063db917f8a3f25601 650 Gene3D G3DSA:3.30.450.20 142 275 3.2E-7 T 11-10-2018 AMK58_04415 1f7bd9b8983d2f4ee3a351c4d9716195 250 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 14 248 6.3E-60 T 11-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 AMK58_04415 1f7bd9b8983d2f4ee3a351c4d9716195 250 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 148 247 1.9E-31 T 11-10-2018 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 AMK58_04415 1f7bd9b8983d2f4ee3a351c4d9716195 250 Pfam PF05209 Septum formation inhibitor MinC, N-terminal domain 14 105 4.3E-14 T 11-10-2018 IPR007874 Septum formation inhibitor MinC, N-terminal GO:0051302 AMK58_04415 1f7bd9b8983d2f4ee3a351c4d9716195 250 Gene3D G3DSA:2.160.20.70 143 250 4.2E-32 T 11-10-2018 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 AMK58_04415 1f7bd9b8983d2f4ee3a351c4d9716195 250 SUPERFAMILY SSF63848 146 249 3.27E-31 T 11-10-2018 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily GO:0000902 AMK58_04415 1f7bd9b8983d2f4ee3a351c4d9716195 250 Gene3D G3DSA:3.30.750.120 8 125 4.0E-25 T 11-10-2018 IPR038061 MinC, Proteobacteria, N-terminal domain superfamily AMK58_04415 1f7bd9b8983d2f4ee3a351c4d9716195 250 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 13 250 24.358 T 11-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 AMK58_04590 e23e8bc3a3d97a105eefaa9f9d59b612 126 Pfam PF01521 Iron-sulphur cluster biosynthesis 2 103 2.8E-24 T 11-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AMK58_04590 e23e8bc3a3d97a105eefaa9f9d59b612 126 SUPERFAMILY SSF89360 1 96 1.59E-27 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 AMK58_04590 e23e8bc3a3d97a105eefaa9f9d59b612 126 Gene3D G3DSA:2.60.300.12 1 108 9.7E-32 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 AMK58_04590 e23e8bc3a3d97a105eefaa9f9d59b612 126 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 88 105 - T 11-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 AMK58_04590 e23e8bc3a3d97a105eefaa9f9d59b612 126 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 2 106 1.5E-36 T 11-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 AMK58_00490 a028d76632a018647a80aaf6615f24fd 261 SUPERFAMILY SSF51366 1 251 1.57E-87 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AMK58_00490 a028d76632a018647a80aaf6615f24fd 261 Pfam PF00977 Histidine biosynthesis protein 5 235 3.5E-93 T 11-10-2018 IPR006062 Histidine biosynthesis GO:0000105 AMK58_00490 a028d76632a018647a80aaf6615f24fd 261 Gene3D G3DSA:3.20.20.70 1 261 3.3E-111 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_00490 a028d76632a018647a80aaf6615f24fd 261 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 1 251 48.856 T 11-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 AMK58_00490 a028d76632a018647a80aaf6615f24fd 261 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 1 251 5.1E-111 T 11-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 AMK58_27910 781296f9cbdc8e953ab28cc2ef7d3a1f 717 Pfam PF07715 TonB-dependent Receptor Plug Domain 74 178 2.2E-19 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain AMK58_27910 781296f9cbdc8e953ab28cc2ef7d3a1f 717 Gene3D G3DSA:2.40.170.20 190 717 1.4E-106 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily AMK58_27910 781296f9cbdc8e953ab28cc2ef7d3a1f 717 Gene3D G3DSA:2.170.130.10 62 189 5.5E-28 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily AMK58_27910 781296f9cbdc8e953ab28cc2ef7d3a1f 717 SUPERFAMILY SSF56935 31 717 8.35E-132 T 11-10-2018 AMK58_27910 781296f9cbdc8e953ab28cc2ef7d3a1f 717 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 75 717 1.7E-85 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 AMK58_27910 781296f9cbdc8e953ab28cc2ef7d3a1f 717 Pfam PF00593 TonB dependent receptor 254 714 2.9E-51 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel AMK58_27910 781296f9cbdc8e953ab28cc2ef7d3a1f 717 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 700 717 - T 11-10-2018 IPR010917 TonB-dependent receptor, conserved site AMK58_13230 6090dd51e8aef69ba19ead3be7aeb2ff 257 Pfam PF00175 Oxidoreductase NAD-binding domain 112 228 1.9E-6 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AMK58_13230 6090dd51e8aef69ba19ead3be7aeb2ff 257 Gene3D G3DSA:3.40.50.80 98 256 2.5E-39 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMK58_13230 6090dd51e8aef69ba19ead3be7aeb2ff 257 Pfam PF00970 Oxidoreductase FAD-binding domain 19 90 5.2E-6 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 AMK58_13230 6090dd51e8aef69ba19ead3be7aeb2ff 257 Gene3D G3DSA:2.40.30.10 1 97 3.6E-29 T 11-10-2018 AMK58_13230 6090dd51e8aef69ba19ead3be7aeb2ff 257 SUPERFAMILY SSF52343 103 255 2.75E-37 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMK58_13230 6090dd51e8aef69ba19ead3be7aeb2ff 257 SUPERFAMILY SSF63380 4 99 5.73E-24 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AMK58_22030 3a0f2334ed823d3ee5a254ddd26b9e48 359 SUPERFAMILY SSF51735 5 334 3.69E-85 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_22030 3a0f2334ed823d3ee5a254ddd26b9e48 359 Pfam PF16363 GDP-mannose 4,6 dehydratase 6 329 3.6E-55 T 11-10-2018 IPR016040 NAD(P)-binding domain AMK58_22030 3a0f2334ed823d3ee5a254ddd26b9e48 359 Gene3D G3DSA:3.40.50.720 4 340 3.9E-98 T 11-10-2018 AMK58_02550 9c58ffd4080b3f8a9a77e1c62e14f313 748 SMART SM00091 356 422 4.2E-11 T 11-10-2018 IPR000014 PAS domain AMK58_02550 9c58ffd4080b3f8a9a77e1c62e14f313 748 Gene3D G3DSA:1.10.287.130 484 571 2.3E-28 T 11-10-2018 AMK58_02550 9c58ffd4080b3f8a9a77e1c62e14f313 748 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 620 731 1.1E-26 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_02550 9c58ffd4080b3f8a9a77e1c62e14f313 748 Gene3D G3DSA:3.30.565.10 572 734 2.2E-48 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_02550 9c58ffd4080b3f8a9a77e1c62e14f313 748 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 356 492 5.8E-23 T 11-10-2018 IPR000014 PAS domain AMK58_02550 9c58ffd4080b3f8a9a77e1c62e14f313 748 Pfam PF02743 Cache domain 81 248 6.3E-13 T 11-10-2018 IPR033479 Double Cache domain 1 AMK58_02550 9c58ffd4080b3f8a9a77e1c62e14f313 748 PRINTS PR00344 Bacterial sensor protein C-terminal signature 675 685 1.7E-18 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_02550 9c58ffd4080b3f8a9a77e1c62e14f313 748 PRINTS PR00344 Bacterial sensor protein C-terminal signature 692 710 1.7E-18 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_02550 9c58ffd4080b3f8a9a77e1c62e14f313 748 PRINTS PR00344 Bacterial sensor protein C-terminal signature 657 671 1.7E-18 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_02550 9c58ffd4080b3f8a9a77e1c62e14f313 748 PRINTS PR00344 Bacterial sensor protein C-terminal signature 716 729 1.7E-18 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_02550 9c58ffd4080b3f8a9a77e1c62e14f313 748 Gene3D G3DSA:3.30.450.20 56 211 6.3E-33 T 11-10-2018 AMK58_02550 9c58ffd4080b3f8a9a77e1c62e14f313 748 SUPERFAMILY SSF55785 367 492 1.52E-24 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_02550 9c58ffd4080b3f8a9a77e1c62e14f313 748 SMART SM00387 619 732 2.6E-41 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_02550 9c58ffd4080b3f8a9a77e1c62e14f313 748 Pfam PF00989 PAS fold 357 456 4.9E-13 T 11-10-2018 IPR013767 PAS fold GO:0006355 AMK58_02550 9c58ffd4080b3f8a9a77e1c62e14f313 748 Gene3D G3DSA:3.30.450.20 352 483 3.7E-32 T 11-10-2018 AMK58_02550 9c58ffd4080b3f8a9a77e1c62e14f313 748 Gene3D G3DSA:3.30.450.20 218 303 1.7E-8 T 11-10-2018 AMK58_02550 9c58ffd4080b3f8a9a77e1c62e14f313 748 SUPERFAMILY SSF55874 563 730 3.8E-48 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_02550 9c58ffd4080b3f8a9a77e1c62e14f313 748 SUPERFAMILY SSF47384 492 574 1.06E-21 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_02550 9c58ffd4080b3f8a9a77e1c62e14f313 748 Pfam PF00512 His Kinase A (phospho-acceptor) domain 505 573 4.1E-20 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_02550 9c58ffd4080b3f8a9a77e1c62e14f313 748 SMART SM00388 505 573 4.2E-24 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_00320 78d270ca64a29952c951630bb14746b1 390 Gene3D G3DSA:2.40.160.10 28 375 3.8E-49 T 11-10-2018 IPR023614 Porin domain superfamily AMK58_00320 78d270ca64a29952c951630bb14746b1 390 Pfam PF13609 Gram-negative porin 10 366 2.0E-55 T 11-10-2018 AMK58_00320 78d270ca64a29952c951630bb14746b1 390 SUPERFAMILY SSF56935 21 390 9.77E-33 T 11-10-2018 AMK58_11225 d8e52e80e417cd8383ac603d784dbc5b 347 TIGRFAM TIGR03640 cas1_DVULG: CRISPR-associated endonuclease Cas1, subtype I-C/DVULG 3 346 3.8E-156 T 11-10-2018 IPR019856 CRISPR-associated protein Cas1, DVULG subtype GO:0004520|GO:0043571|GO:0046872 AMK58_11225 d8e52e80e417cd8383ac603d784dbc5b 347 Pfam PF01867 CRISPR associated protein Cas1 8 302 4.0E-104 T 11-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 AMK58_11225 d8e52e80e417cd8383ac603d784dbc5b 347 Gene3D G3DSA:3.100.10.20 6 84 1.6E-18 T 11-10-2018 AMK58_11225 d8e52e80e417cd8383ac603d784dbc5b 347 TIGRFAM TIGR00287 cas1: CRISPR-associated endonuclease Cas1 7 339 2.9E-82 T 11-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 AMK58_11225 d8e52e80e417cd8383ac603d784dbc5b 347 Gene3D G3DSA:1.20.120.920 86 346 4.3E-78 T 11-10-2018 AMK58_11225 d8e52e80e417cd8383ac603d784dbc5b 347 Hamap MF_01470 CRISPR-associated endonuclease Cas1 [cas1]. 2 332 27.81 T 11-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 AMK58_20075 14f25fdda10eef88bd124f83e2468ccc 178 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 14 152 2.1E-39 T 11-10-2018 IPR001453 MoaB/Mog domain AMK58_20075 14f25fdda10eef88bd124f83e2468ccc 178 TIGRFAM TIGR02667 moaB_proteo: molybdenum cofactor biosynthesis protein B 10 171 4.0E-81 T 11-10-2018 IPR013484 Molybdenum cofactor biosynthesis protein B, proteobacteria GO:0006777 AMK58_20075 14f25fdda10eef88bd124f83e2468ccc 178 Gene3D G3DSA:3.40.980.10 4 173 5.9E-51 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily AMK58_20075 14f25fdda10eef88bd124f83e2468ccc 178 Pfam PF00994 Probable molybdopterin binding domain 16 157 3.6E-37 T 11-10-2018 IPR001453 MoaB/Mog domain AMK58_20075 14f25fdda10eef88bd124f83e2468ccc 178 SUPERFAMILY SSF53218 7 171 3.53E-48 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily AMK58_20075 14f25fdda10eef88bd124f83e2468ccc 178 SMART SM00852 16 160 9.2E-36 T 11-10-2018 IPR001453 MoaB/Mog domain AMK58_20075 14f25fdda10eef88bd124f83e2468ccc 178 PIRSF PIRSF006443 1 168 9.3E-64 T 11-10-2018 IPR012245 Molybdenum cofactor biosynthesis protein MoaB GO:0006777 AMK58_20075 14f25fdda10eef88bd124f83e2468ccc 178 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 74 87 - T 11-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 AMK58_18665 188ef7cd667a653bfb05f3d5cf464be1 457 Pfam PF06123 Inner membrane protein CreD 26 452 9.1E-99 T 11-10-2018 IPR010364 Uncharacterised protein family, inner membrane CreD AMK58_06615 ac7baecc632e8ea1e1016e4f16331f20 693 SUPERFAMILY SSF47384 311 384 9.81E-12 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_06615 ac7baecc632e8ea1e1016e4f16331f20 693 SUPERFAMILY SSF55874 385 535 3.67E-38 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_06615 ac7baecc632e8ea1e1016e4f16331f20 693 Gene3D G3DSA:3.30.565.10 388 543 8.3E-39 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_06615 ac7baecc632e8ea1e1016e4f16331f20 693 Pfam PF13188 PAS domain 192 244 1.6E-5 T 11-10-2018 IPR000014 PAS domain AMK58_06615 ac7baecc632e8ea1e1016e4f16331f20 693 SMART SM00387 428 537 2.9E-31 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_06615 ac7baecc632e8ea1e1016e4f16331f20 693 Pfam PF00072 Response regulator receiver domain 571 688 1.1E-14 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_06615 ac7baecc632e8ea1e1016e4f16331f20 693 SUPERFAMILY SSF52172 570 692 2.56E-25 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_06615 ac7baecc632e8ea1e1016e4f16331f20 693 SMART SM00388 320 386 3.9E-8 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_06615 ac7baecc632e8ea1e1016e4f16331f20 693 Gene3D G3DSA:3.40.50.2300 566 693 9.5E-25 T 11-10-2018 AMK58_06615 ac7baecc632e8ea1e1016e4f16331f20 693 SMART SM00448 569 688 6.7E-15 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_06615 ac7baecc632e8ea1e1016e4f16331f20 693 Gene3D G3DSA:1.10.287.130 315 383 1.8E-19 T 11-10-2018 AMK58_06615 ac7baecc632e8ea1e1016e4f16331f20 693 Pfam PF00512 His Kinase A (phospho-acceptor) domain 322 384 2.9E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_06615 ac7baecc632e8ea1e1016e4f16331f20 693 Pfam PF12860 PAS fold 73 185 2.8E-18 T 11-10-2018 AMK58_06615 ac7baecc632e8ea1e1016e4f16331f20 693 SUPERFAMILY SSF55785 177 303 2.51E-14 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_06615 ac7baecc632e8ea1e1016e4f16331f20 693 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 429 536 3.3E-21 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_06615 ac7baecc632e8ea1e1016e4f16331f20 693 SUPERFAMILY SSF55785 75 187 2.72E-5 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_06615 ac7baecc632e8ea1e1016e4f16331f20 693 Gene3D G3DSA:3.30.450.20 188 314 1.1E-9 T 11-10-2018 AMK58_06615 ac7baecc632e8ea1e1016e4f16331f20 693 Gene3D G3DSA:3.30.450.20 58 187 3.9E-8 T 11-10-2018 AMK58_06615 ac7baecc632e8ea1e1016e4f16331f20 693 PRINTS PR00344 Bacterial sensor protein C-terminal signature 466 480 2.1E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_06615 ac7baecc632e8ea1e1016e4f16331f20 693 PRINTS PR00344 Bacterial sensor protein C-terminal signature 497 515 2.1E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_06615 ac7baecc632e8ea1e1016e4f16331f20 693 PRINTS PR00344 Bacterial sensor protein C-terminal signature 484 494 2.1E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_06615 ac7baecc632e8ea1e1016e4f16331f20 693 PRINTS PR00344 Bacterial sensor protein C-terminal signature 521 534 2.1E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_19580 1541bb3d31ef86d5201762bd2410d5ec 232 Gene3D G3DSA:3.30.565.10 96 231 1.7E-31 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_19580 1541bb3d31ef86d5201762bd2410d5ec 232 Pfam PF10090 Histidine phosphotransferase C-terminal domain 98 222 2.3E-27 T 11-10-2018 IPR018762 Histidine phosphotransferase ChpT, C-terminal AMK58_19580 1541bb3d31ef86d5201762bd2410d5ec 232 Gene3D G3DSA:1.10.287.130 20 95 3.2E-26 T 11-10-2018 AMK58_06285 605f828b013cc4cb53aaf0435187e025 396 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 15 390 45.843 T 11-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AMK58_06285 605f828b013cc4cb53aaf0435187e025 396 Gene3D G3DSA:3.40.50.720 10 158 1.3E-52 T 11-10-2018 AMK58_06285 605f828b013cc4cb53aaf0435187e025 396 Pfam PF13288 DXP reductoisomerase C-terminal domain 269 385 4.3E-40 T 11-10-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AMK58_06285 605f828b013cc4cb53aaf0435187e025 396 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 14 393 9.4E-140 T 11-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AMK58_06285 605f828b013cc4cb53aaf0435187e025 396 SUPERFAMILY SSF51735 12 158 4.14E-49 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_06285 605f828b013cc4cb53aaf0435187e025 396 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 15 140 3.3E-41 T 11-10-2018 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AMK58_06285 605f828b013cc4cb53aaf0435187e025 396 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 154 237 1.6E-36 T 11-10-2018 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AMK58_06285 605f828b013cc4cb53aaf0435187e025 396 Gene3D G3DSA:1.10.1740.10 311 396 3.3E-26 T 11-10-2018 AMK58_06285 605f828b013cc4cb53aaf0435187e025 396 PIRSF PIRSF006205 12 396 2.5E-149 T 11-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AMK58_06285 605f828b013cc4cb53aaf0435187e025 396 SUPERFAMILY SSF55347 134 272 5.23E-59 T 11-10-2018 AMK58_06285 605f828b013cc4cb53aaf0435187e025 396 SUPERFAMILY SSF69055 300 392 3.53E-29 T 11-10-2018 IPR036169 DXP reductoisomerase, C-terminal domain superfamily KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AMK58_26310 f1574705521a5a1bea119a3177acb8fb 405 SUPERFAMILY SSF52096 44 369 7.46E-61 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMK58_26310 f1574705521a5a1bea119a3177acb8fb 405 SMART SM00228 102 173 2.5E-14 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMK58_26310 f1574705521a5a1bea119a3177acb8fb 405 Gene3D G3DSA:2.30.42.10 102 189 4.5E-82 T 11-10-2018 AMK58_26310 f1574705521a5a1bea119a3177acb8fb 405 Pfam PF13180 PDZ domain 102 182 5.1E-13 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMK58_26310 f1574705521a5a1bea119a3177acb8fb 405 Pfam PF03572 Peptidase family S41 200 363 5.8E-50 T 11-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 AMK58_26310 f1574705521a5a1bea119a3177acb8fb 405 SMART SM00245 166 365 1.4E-56 T 11-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 AMK58_26310 f1574705521a5a1bea119a3177acb8fb 405 Gene3D G3DSA:3.90.226.10 190 361 4.5E-82 T 11-10-2018 AMK58_26310 f1574705521a5a1bea119a3177acb8fb 405 Gene3D G3DSA:3.30.750.44 53 340 4.5E-82 T 11-10-2018 AMK58_26310 f1574705521a5a1bea119a3177acb8fb 405 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 64 370 2.6E-81 T 11-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 AMK58_26310 f1574705521a5a1bea119a3177acb8fb 405 SUPERFAMILY SSF50156 95 193 9.72E-19 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 AMK58_20825 c96608bec52eb62c1a9dc69cfc59f856 108 Pfam PF09981 Uncharacterized protein conserved in bacteria (DUF2218) 8 104 1.1E-30 T 11-10-2018 IPR014543 Uncharacterised conserved protein UCP028291 AMK58_20825 c96608bec52eb62c1a9dc69cfc59f856 108 Gene3D G3DSA:3.30.310.50 3 107 2.4E-28 T 11-10-2018 AMK58_24650 32a4156ca3a95afd58fcbbb909ff0dc5 257 Pfam PF01435 Peptidase family M48 65 245 6.3E-38 T 11-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AMK58_20780 c2db5f622026971d7a3abeb2b3ec1e76 712 Pfam PF00122 E1-E2 ATPase 199 361 2.7E-32 T 11-10-2018 AMK58_20780 c2db5f622026971d7a3abeb2b3ec1e76 712 SUPERFAMILY SSF56784 386 690 2.66E-40 T 11-10-2018 IPR036412 HAD-like superfamily AMK58_20780 c2db5f622026971d7a3abeb2b3ec1e76 712 Gene3D G3DSA:2.70.150.20 190 300 4.3E-29 T 11-10-2018 AMK58_20780 c2db5f622026971d7a3abeb2b3ec1e76 712 Gene3D G3DSA:3.40.50.1000 369 640 2.4E-76 T 11-10-2018 IPR023214 HAD superfamily AMK58_20780 c2db5f622026971d7a3abeb2b3ec1e76 712 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 169 666 2.7E-65 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AMK58_20780 c2db5f622026971d7a3abeb2b3ec1e76 712 ProSitePatterns PS01229 Hypothetical cof family signature 2. 590 612 - T 11-10-2018 AMK58_20780 c2db5f622026971d7a3abeb2b3ec1e76 712 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 147 691 3.8E-139 T 11-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AMK58_20780 c2db5f622026971d7a3abeb2b3ec1e76 712 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 514 525 4.2E-24 T 11-10-2018 AMK58_20780 c2db5f622026971d7a3abeb2b3ec1e76 712 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 613 625 4.2E-24 T 11-10-2018 AMK58_20780 c2db5f622026971d7a3abeb2b3ec1e76 712 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 590 609 4.2E-24 T 11-10-2018 AMK58_20780 c2db5f622026971d7a3abeb2b3ec1e76 712 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 246 260 4.2E-24 T 11-10-2018 AMK58_20780 c2db5f622026971d7a3abeb2b3ec1e76 712 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 537 547 4.2E-24 T 11-10-2018 AMK58_20780 c2db5f622026971d7a3abeb2b3ec1e76 712 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 388 402 4.2E-24 T 11-10-2018 AMK58_20780 c2db5f622026971d7a3abeb2b3ec1e76 712 Gene3D G3DSA:3.40.1110.10 399 521 2.4E-76 T 11-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AMK58_20780 c2db5f622026971d7a3abeb2b3ec1e76 712 SUPERFAMILY SSF81653 200 296 5.36E-25 T 11-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 AMK58_20780 c2db5f622026971d7a3abeb2b3ec1e76 712 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 390 396 - T 11-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 AMK58_20780 c2db5f622026971d7a3abeb2b3ec1e76 712 Pfam PF00702 haloacid dehalogenase-like hydrolase 385 603 1.1E-28 T 11-10-2018 AMK58_12630 ab8ea2a4ecf99f8bbf97fb4cda5b872b 584 Pfam PF01019 Gamma-glutamyltranspeptidase 67 579 2.2E-153 T 11-10-2018 AMK58_12630 ab8ea2a4ecf99f8bbf97fb4cda5b872b 584 Gene3D G3DSA:3.60.20.40 405 584 2.0E-57 T 11-10-2018 AMK58_12630 ab8ea2a4ecf99f8bbf97fb4cda5b872b 584 ProSitePatterns PS00462 Gamma-glutamyltranspeptidase signature. 405 429 - T 11-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 AMK58_12630 ab8ea2a4ecf99f8bbf97fb4cda5b872b 584 SUPERFAMILY SSF56235 44 583 1.27E-168 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMK58_12630 ab8ea2a4ecf99f8bbf97fb4cda5b872b 584 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 53 576 1.2E-122 T 11-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 AMK58_12630 ab8ea2a4ecf99f8bbf97fb4cda5b872b 584 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 149 167 3.1E-68 T 11-10-2018 AMK58_12630 ab8ea2a4ecf99f8bbf97fb4cda5b872b 584 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 405 423 3.1E-68 T 11-10-2018 AMK58_12630 ab8ea2a4ecf99f8bbf97fb4cda5b872b 584 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 298 317 3.1E-68 T 11-10-2018 AMK58_12630 ab8ea2a4ecf99f8bbf97fb4cda5b872b 584 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 427 445 3.1E-68 T 11-10-2018 AMK58_12630 ab8ea2a4ecf99f8bbf97fb4cda5b872b 584 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 74 99 3.1E-68 T 11-10-2018 AMK58_12630 ab8ea2a4ecf99f8bbf97fb4cda5b872b 584 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 268 284 3.1E-68 T 11-10-2018 AMK58_12630 ab8ea2a4ecf99f8bbf97fb4cda5b872b 584 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 167 186 3.1E-68 T 11-10-2018 AMK58_12630 ab8ea2a4ecf99f8bbf97fb4cda5b872b 584 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 463 478 3.1E-68 T 11-10-2018 AMK58_12630 ab8ea2a4ecf99f8bbf97fb4cda5b872b 584 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 487 504 3.1E-68 T 11-10-2018 AMK58_12630 ab8ea2a4ecf99f8bbf97fb4cda5b872b 584 Gene3D G3DSA:1.10.246.130 284 403 3.8E-37 T 11-10-2018 AMK58_28295 0c45cf88623c31bb0afe1b9173383415 303 ProSitePatterns PS00397 Site-specific recombinases active site. 6 14 - T 11-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 AMK58_28295 0c45cf88623c31bb0afe1b9173383415 303 SMART SM00857 3 137 5.9E-52 T 11-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AMK58_28295 0c45cf88623c31bb0afe1b9173383415 303 Pfam PF00239 Resolvase, N terminal domain 4 136 3.1E-39 T 11-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AMK58_28295 0c45cf88623c31bb0afe1b9173383415 303 ProSitePatterns PS00398 Site-specific recombinases signature 2. 56 68 - T 11-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 AMK58_28295 0c45cf88623c31bb0afe1b9173383415 303 Gene3D G3DSA:3.40.50.1390 2 126 1.6E-42 T 11-10-2018 AMK58_28295 0c45cf88623c31bb0afe1b9173383415 303 SUPERFAMILY SSF53041 1 136 6.67E-39 T 11-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 AMK58_19595 126655edd77c1b8b22f1138481a8d574 806 Gene3D G3DSA:3.60.20.10 255 775 8.2E-174 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMK58_19595 126655edd77c1b8b22f1138481a8d574 806 SUPERFAMILY SSF56235 50 799 4.12E-221 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMK58_19595 126655edd77c1b8b22f1138481a8d574 806 PIRSF PIRSF001227 11 796 2.0E-187 T 11-10-2018 IPR014395 Penicillin/GL-7-ACA/AHL acylase GO:0016811 AMK58_19595 126655edd77c1b8b22f1138481a8d574 806 Gene3D G3DSA:1.10.439.10 29 192 8.7E-61 T 11-10-2018 IPR023343 Penicillin amidase type, domain 1 GO:0016811 AMK58_19595 126655edd77c1b8b22f1138481a8d574 806 Pfam PF01804 Penicillin amidase 54 780 6.8E-219 T 11-10-2018 IPR002692 Penicillin/GL-7-ACA/AHL/aculeacin-A acylase GO:0016787|GO:0017000 AMK58_19595 126655edd77c1b8b22f1138481a8d574 806 Gene3D G3DSA:1.10.1400.10 549 682 8.2E-174 T 11-10-2018 AMK58_19595 126655edd77c1b8b22f1138481a8d574 806 Gene3D G3DSA:2.30.120.10 327 400 8.2E-174 T 11-10-2018 AMK58_06555 f0cf968cd7980c37cfc7e92acaddc01c 516 Pfam PF03023 MviN-like protein 27 469 2.3E-119 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMK58_06555 f0cf968cd7980c37cfc7e92acaddc01c 516 PRINTS PR01806 Virulence factor MviN signature 257 283 3.0E-75 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMK58_06555 f0cf968cd7980c37cfc7e92acaddc01c 516 PRINTS PR01806 Virulence factor MviN signature 155 176 3.0E-75 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMK58_06555 f0cf968cd7980c37cfc7e92acaddc01c 516 PRINTS PR01806 Virulence factor MviN signature 355 374 3.0E-75 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMK58_06555 f0cf968cd7980c37cfc7e92acaddc01c 516 PRINTS PR01806 Virulence factor MviN signature 50 66 3.0E-75 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMK58_06555 f0cf968cd7980c37cfc7e92acaddc01c 516 PRINTS PR01806 Virulence factor MviN signature 131 155 3.0E-75 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMK58_06555 f0cf968cd7980c37cfc7e92acaddc01c 516 PRINTS PR01806 Virulence factor MviN signature 31 50 3.0E-75 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMK58_06555 f0cf968cd7980c37cfc7e92acaddc01c 516 PRINTS PR01806 Virulence factor MviN signature 407 424 3.0E-75 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMK58_06555 f0cf968cd7980c37cfc7e92acaddc01c 516 PIRSF PIRSF002869 1 512 6.5E-157 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMK58_06555 f0cf968cd7980c37cfc7e92acaddc01c 516 Hamap MF_02078 Probable lipid II flippase MurJ [murJ]. 1 465 19.699 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMK58_06555 f0cf968cd7980c37cfc7e92acaddc01c 516 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 2 499 5.7E-138 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMK58_02440 274a04e354bdbeec205551037bd4fc76 370 Pfam PF05036 Sporulation related domain 292 367 4.7E-17 T 11-10-2018 IPR007730 Sporulation-like domain GO:0042834 AMK58_02440 274a04e354bdbeec205551037bd4fc76 370 Gene3D G3DSA:3.30.70.1070 293 368 2.8E-12 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 AMK58_02440 274a04e354bdbeec205551037bd4fc76 370 SUPERFAMILY SSF110997 292 359 8.76E-15 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 AMK58_10225 271e0c1826dcf21a4dca68e4b67e37ae 600 Pfam PF00005 ABC transporter 368 517 1.8E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_10225 271e0c1826dcf21a4dca68e4b67e37ae 600 Gene3D G3DSA:1.20.1560.10 10 331 7.4E-83 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMK58_10225 271e0c1826dcf21a4dca68e4b67e37ae 600 Gene3D G3DSA:3.40.50.300 342 595 1.8E-92 T 11-10-2018 AMK58_10225 271e0c1826dcf21a4dca68e4b67e37ae 600 TIGRFAM TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein 14 588 2.3E-266 T 11-10-2018 IPR011918 ABC transporter, ATP-binding/permease protein AMK58_10225 271e0c1826dcf21a4dca68e4b67e37ae 600 SUPERFAMILY SSF52540 341 588 1.71E-89 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_10225 271e0c1826dcf21a4dca68e4b67e37ae 600 ProSitePatterns PS00211 ABC transporters family signature. 489 503 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_10225 271e0c1826dcf21a4dca68e4b67e37ae 600 SUPERFAMILY SSF90123 19 336 1.26E-76 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMK58_10225 271e0c1826dcf21a4dca68e4b67e37ae 600 SMART SM00382 377 563 1.8E-20 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_10225 271e0c1826dcf21a4dca68e4b67e37ae 600 Pfam PF00664 ABC transporter transmembrane region 39 302 4.0E-48 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMK58_21910 0da4a7de2588107f857e0215ee86f0de 314 Gene3D G3DSA:3.20.20.70 5 314 6.1E-132 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_21910 0da4a7de2588107f857e0215ee86f0de 314 Pfam PF05853 beta-keto acid cleavage enzyme 10 306 1.4E-107 T 11-10-2018 IPR008567 3-keto-5-aminohexanoate cleavage enzyme GO:0016740|GO:0019475 KEGG: 00310+2.3.1.247 AMK58_17175 17eeade484df2a1f3d9ff66020579e8d 118 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 14 118 2.2E-36 T 11-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 AMK58_17175 17eeade484df2a1f3d9ff66020579e8d 118 Pfam PF01521 Iron-sulphur cluster biosynthesis 13 114 1.6E-19 T 11-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AMK58_17175 17eeade484df2a1f3d9ff66020579e8d 118 Gene3D G3DSA:2.60.300.12 12 118 1.8E-36 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 AMK58_17175 17eeade484df2a1f3d9ff66020579e8d 118 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 99 116 - T 11-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 AMK58_17175 17eeade484df2a1f3d9ff66020579e8d 118 SUPERFAMILY SSF89360 11 104 4.32E-28 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 AMK58_09325 0f50159c60c21dd1cee3c652c669376a 114 SUPERFAMILY SSF143100 1 72 2.09E-11 T 11-10-2018 IPR035069 TTHA1013/TTHA0281-like AMK58_09325 0f50159c60c21dd1cee3c652c669376a 114 SUPERFAMILY SSF47598 67 106 4.56E-5 T 11-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 AMK58_09325 0f50159c60c21dd1cee3c652c669376a 114 Pfam PF05534 HicB family 62 101 6.2E-10 T 11-10-2018 IPR008651 Uncharacterised protein family HicB AMK58_21120 a0ff791fc980453583d8ccb1b34301d6 1515 Gene3D G3DSA:3.60.20.10 37 458 2.4E-165 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMK58_21120 a0ff791fc980453583d8ccb1b34301d6 1515 Gene3D G3DSA:3.20.20.70 817 1229 3.5E-182 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_21120 a0ff791fc980453583d8ccb1b34301d6 1515 Gene3D G3DSA:3.20.20.70 459 816 4.0E-137 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_21120 a0ff791fc980453583d8ccb1b34301d6 1515 Pfam PF00310 Glutamine amidotransferases class-II 37 455 5.4E-156 T 11-10-2018 IPR017932 Glutamine amidotransferase type 2 domain AMK58_21120 a0ff791fc980453583d8ccb1b34301d6 1515 SUPERFAMILY SSF69336 1241 1504 6.02E-92 T 11-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 AMK58_21120 a0ff791fc980453583d8ccb1b34301d6 1515 Pfam PF01493 GXGXG motif 1270 1453 1.2E-75 T 11-10-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0016491|GO:0055114 AMK58_21120 a0ff791fc980453583d8ccb1b34301d6 1515 Pfam PF01645 Conserved region in glutamate synthase 829 1192 4.3E-161 T 11-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 AMK58_21120 a0ff791fc980453583d8ccb1b34301d6 1515 SUPERFAMILY SSF56235 37 457 2.01E-147 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMK58_21120 a0ff791fc980453583d8ccb1b34301d6 1515 SUPERFAMILY SSF51395 461 1228 6.87E-259 T 11-10-2018 AMK58_21120 a0ff791fc980453583d8ccb1b34301d6 1515 Gene3D G3DSA:2.160.20.60 1242 1515 6.1E-115 T 11-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 AMK58_21120 a0ff791fc980453583d8ccb1b34301d6 1515 Pfam PF04898 Glutamate synthase central domain 485 767 8.0E-100 T 11-10-2018 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 AMK58_23260 130313f234e07be6948686b66bc4e2c8 299 Gene3D G3DSA:3.20.20.70 1 298 6.3E-138 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_23260 130313f234e07be6948686b66bc4e2c8 299 ProSitePatterns PS01062 Hydroxymethylglutaryl-coenzyme A lyase active site. 233 242 - T 11-10-2018 IPR000138 Hydroxymethylglutaryl-CoA lyase, active site GO:0004419 KEGG: 00072+4.1.3.4|KEGG: 00280+4.1.3.4|KEGG: 00281+4.1.3.4|KEGG: 00650+4.1.3.4|MetaCyc: PWY-5074|Reactome: R-HSA-77111|Reactome: R-HSA-9033241 AMK58_23260 130313f234e07be6948686b66bc4e2c8 299 SUPERFAMILY SSF51569 1 291 1.47E-75 T 11-10-2018 AMK58_23260 130313f234e07be6948686b66bc4e2c8 299 Pfam PF00682 HMGL-like 7 280 1.1E-53 T 11-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 AMK58_28675 eed2fb3563d6100b079a596b93cd27b9 408 PRINTS PR00410 Phenol hydroxylase reductase family signature 367 375 1.2E-7 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AMK58_28675 eed2fb3563d6100b079a596b93cd27b9 408 PRINTS PR00410 Phenol hydroxylase reductase family signature 188 200 1.2E-7 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AMK58_28675 eed2fb3563d6100b079a596b93cd27b9 408 PRINTS PR00410 Phenol hydroxylase reductase family signature 272 291 1.2E-7 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AMK58_28675 eed2fb3563d6100b079a596b93cd27b9 408 Gene3D G3DSA:1.10.490.10 4 146 6.3E-47 T 11-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 AMK58_28675 eed2fb3563d6100b079a596b93cd27b9 408 Pfam PF00175 Oxidoreductase NAD-binding domain 273 379 2.6E-13 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AMK58_28675 eed2fb3563d6100b079a596b93cd27b9 408 SUPERFAMILY SSF46458 5 144 1.35E-33 T 11-10-2018 IPR009050 Globin-like superfamily AMK58_28675 eed2fb3563d6100b079a596b93cd27b9 408 Pfam PF00970 Oxidoreductase FAD-binding domain 162 261 4.2E-5 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 AMK58_28675 eed2fb3563d6100b079a596b93cd27b9 408 Gene3D G3DSA:3.40.50.80 266 404 4.2E-30 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMK58_28675 eed2fb3563d6100b079a596b93cd27b9 408 SUPERFAMILY SSF63380 154 263 2.01E-28 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AMK58_28675 eed2fb3563d6100b079a596b93cd27b9 408 SUPERFAMILY SSF52343 264 402 6.94E-35 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMK58_28675 eed2fb3563d6100b079a596b93cd27b9 408 Pfam PF00042 Globin 11 106 3.3E-5 T 11-10-2018 IPR000971 Globin GO:0020037 AMK58_28675 eed2fb3563d6100b079a596b93cd27b9 408 Gene3D G3DSA:2.40.30.10 154 263 2.7E-33 T 11-10-2018 AMK58_18755 f4546a7c038615cbc64fec8048a7eea9 158 Hamap MF_00143 UPF0114 protein YqhA [yqhA]. 1 158 76.158 T 11-10-2018 IPR020761 Uncharacterised protein family UPF0114, bacteria AMK58_18755 f4546a7c038615cbc64fec8048a7eea9 158 TIGRFAM TIGR00645 HI0507: TIGR00645 family protein 1 157 2.5E-53 T 11-10-2018 IPR020761 Uncharacterised protein family UPF0114, bacteria AMK58_18755 f4546a7c038615cbc64fec8048a7eea9 158 Pfam PF03350 Uncharacterized protein family, UPF0114 1 117 7.3E-36 T 11-10-2018 IPR005134 Uncharacterised protein family UPF0114 AMK58_24180 6b5da86480a57608799a818ba3fa845e 389 Pfam PF00155 Aminotransferase class I and II 33 381 1.7E-64 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMK58_24180 6b5da86480a57608799a818ba3fa845e 389 Gene3D G3DSA:3.90.1150.10 28 381 2.5E-121 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_24180 6b5da86480a57608799a818ba3fa845e 389 SUPERFAMILY SSF53383 9 385 1.6E-113 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_24180 6b5da86480a57608799a818ba3fa845e 389 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 233 246 - T 11-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 AMK58_24180 6b5da86480a57608799a818ba3fa845e 389 Gene3D G3DSA:3.40.640.10 64 283 2.5E-121 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_04575 da645c68b0bb68c62bdf8d5f657100ec 381 Gene3D G3DSA:3.20.20.70 3 269 4.6E-87 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_04575 da645c68b0bb68c62bdf8d5f657100ec 381 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 14 30 - T 11-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMK58_04575 da645c68b0bb68c62bdf8d5f657100ec 381 SUPERFAMILY SSF51569 3 281 1.28E-85 T 11-10-2018 AMK58_04575 da645c68b0bb68c62bdf8d5f657100ec 381 Pfam PF00682 HMGL-like 8 264 1.8E-84 T 11-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 AMK58_04575 da645c68b0bb68c62bdf8d5f657100ec 381 Gene3D G3DSA:1.10.238.260 271 379 1.1E-26 T 11-10-2018 AMK58_04575 da645c68b0bb68c62bdf8d5f657100ec 381 TIGRFAM TIGR02660 nifV_homocitr: homocitrate synthase 7 369 2.2E-161 T 11-10-2018 IPR013477 Homocitrate synthase NifV-like GO:0046912|GO:0051188 KEGG: 00300+2.3.3.14|KEGG: 00620+2.3.3.14|MetaCyc: PWY-3081|MetaCyc: PWY-7710 AMK58_04575 da645c68b0bb68c62bdf8d5f657100ec 381 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 193 206 - T 11-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMK58_17145 ca7ced246c990152c78009c909fd439f 168 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 88 99 - T 11-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AMK58_17145 ca7ced246c990152c78009c909fd439f 168 Gene3D G3DSA:3.30.70.560 1 165 2.3E-54 T 11-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AMK58_17145 ca7ced246c990152c78009c909fd439f 168 SUPERFAMILY SSF55083 1 156 2.22E-50 T 11-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AMK58_17145 ca7ced246c990152c78009c909fd439f 168 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 4 132 3.6E-41 T 11-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AMK58_17145 ca7ced246c990152c78009c909fd439f 168 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 132 4.8E-38 T 11-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AMK58_24935 a67de2659df87f342901c3f3ce36f1e6 879 SUPERFAMILY SSF48452 283 458 2.28E-30 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_24935 a67de2659df87f342901c3f3ce36f1e6 879 Pfam PF13432 Tetratricopeptide repeat 290 349 6.8E-8 T 11-10-2018 AMK58_24935 a67de2659df87f342901c3f3ce36f1e6 879 Pfam PF13432 Tetratricopeptide repeat 390 455 4.8E-8 T 11-10-2018 AMK58_24935 a67de2659df87f342901c3f3ce36f1e6 879 Pfam PF13432 Tetratricopeptide repeat 186 219 0.017 T 11-10-2018 AMK58_24935 a67de2659df87f342901c3f3ce36f1e6 879 Pfam PF13432 Tetratricopeptide repeat 120 181 0.0021 T 11-10-2018 AMK58_24935 a67de2659df87f342901c3f3ce36f1e6 879 Pfam PF13432 Tetratricopeptide repeat 17 76 3.0E-5 T 11-10-2018 AMK58_24935 a67de2659df87f342901c3f3ce36f1e6 879 SUPERFAMILY SSF53756 509 840 5.18E-5 T 11-10-2018 AMK58_24935 a67de2659df87f342901c3f3ce36f1e6 879 Gene3D G3DSA:1.25.40.10 346 486 1.6E-21 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_24935 a67de2659df87f342901c3f3ce36f1e6 879 Pfam PF07721 Tetratricopeptide repeat 80 102 0.027 T 11-10-2018 IPR011717 Tetratricopeptide TPR-4 GO:0042802 AMK58_24935 a67de2659df87f342901c3f3ce36f1e6 879 SMART SM00028 182 215 0.37 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_24935 a67de2659df87f342901c3f3ce36f1e6 879 SMART SM00028 12 45 36.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_24935 a67de2659df87f342901c3f3ce36f1e6 879 SMART SM00028 385 418 18.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_24935 a67de2659df87f342901c3f3ce36f1e6 879 SMART SM00028 351 384 66.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_24935 a67de2659df87f342901c3f3ce36f1e6 879 SMART SM00028 283 316 3.1 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_24935 a67de2659df87f342901c3f3ce36f1e6 879 SMART SM00028 148 181 420.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_24935 a67de2659df87f342901c3f3ce36f1e6 879 SMART SM00028 46 79 160.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_24935 a67de2659df87f342901c3f3ce36f1e6 879 SMART SM00028 80 113 2.9 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_24935 a67de2659df87f342901c3f3ce36f1e6 879 SMART SM00028 421 454 6.5E-4 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_24935 a67de2659df87f342901c3f3ce36f1e6 879 SMART SM00028 317 350 0.056 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_24935 a67de2659df87f342901c3f3ce36f1e6 879 SMART SM00028 114 147 20.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_24935 a67de2659df87f342901c3f3ce36f1e6 879 Pfam PF13844 Glycosyl transferase family 41 680 862 3.4E-25 T 11-10-2018 IPR029489 O-GlcNAc transferase, C-terminal KEGG: 00514+2.4.1.255|MetaCyc: PWY-7437|Reactome: R-HSA-3214847|Reactome: R-HSA-5689603 AMK58_24935 a67de2659df87f342901c3f3ce36f1e6 879 Pfam PF13844 Glycosyl transferase family 41 508 652 5.1E-16 T 11-10-2018 IPR029489 O-GlcNAc transferase, C-terminal KEGG: 00514+2.4.1.255|MetaCyc: PWY-7437|Reactome: R-HSA-3214847|Reactome: R-HSA-5689603 AMK58_24935 a67de2659df87f342901c3f3ce36f1e6 879 Gene3D G3DSA:3.40.50.2000 666 844 1.1E-110 T 11-10-2018 AMK58_24935 a67de2659df87f342901c3f3ce36f1e6 879 SUPERFAMILY SSF48452 9 215 6.3E-25 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_24935 a67de2659df87f342901c3f3ce36f1e6 879 Gene3D G3DSA:1.25.40.10 119 228 1.0E-14 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_24935 a67de2659df87f342901c3f3ce36f1e6 879 Gene3D G3DSA:3.40.50.11380 499 850 1.1E-110 T 11-10-2018 AMK58_24935 a67de2659df87f342901c3f3ce36f1e6 879 Gene3D G3DSA:1.25.40.10 229 345 5.2E-16 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_24935 a67de2659df87f342901c3f3ce36f1e6 879 Gene3D G3DSA:1.25.40.10 14 118 1.3E-16 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_05260 a29f8e2e8cabcf7d98bcd7e6eb020f25 400 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 4 366 54.181 T 11-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AMK58_05260 a29f8e2e8cabcf7d98bcd7e6eb020f25 400 Gene3D G3DSA:3.20.20.105 1 369 6.0E-164 T 11-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AMK58_05260 a29f8e2e8cabcf7d98bcd7e6eb020f25 400 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 6 368 1.3E-149 T 11-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AMK58_05260 a29f8e2e8cabcf7d98bcd7e6eb020f25 400 SUPERFAMILY SSF51713 4 361 2.22E-153 T 11-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AMK58_05260 a29f8e2e8cabcf7d98bcd7e6eb020f25 400 Pfam PF01702 Queuine tRNA-ribosyltransferase 130 360 6.4E-86 T 11-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AMK58_05260 a29f8e2e8cabcf7d98bcd7e6eb020f25 400 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 6 362 2.0E-145 T 11-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AMK58_17400 a09e0031338ac8196f1e33993834ecc5 650 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 518 547 5.7E-18 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_17400 a09e0031338ac8196f1e33993834ecc5 650 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 408 437 5.7E-18 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_17400 a09e0031338ac8196f1e33993834ecc5 650 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 489 516 5.7E-18 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_17400 a09e0031338ac8196f1e33993834ecc5 650 SMART SM00283 391 645 1.5E-33 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_17400 a09e0031338ac8196f1e33993834ecc5 650 Gene3D G3DSA:1.10.287.950 304 646 8.5E-51 T 11-10-2018 AMK58_17400 a09e0031338ac8196f1e33993834ecc5 650 SUPERFAMILY SSF58104 369 644 1.31E-53 T 11-10-2018 AMK58_17400 a09e0031338ac8196f1e33993834ecc5 650 SMART SM00304 302 354 0.0062 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_17400 a09e0031338ac8196f1e33993834ecc5 650 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 470 611 8.6E-30 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_22160 471131f82e8134a64ca70a65515b37f4 337 Pfam PF13379 NMT1-like family 26 254 3.1E-29 T 11-10-2018 AMK58_22160 471131f82e8134a64ca70a65515b37f4 337 SUPERFAMILY SSF53850 30 248 4.56E-29 T 11-10-2018 AMK58_22160 471131f82e8134a64ca70a65515b37f4 337 Gene3D G3DSA:3.40.190.10 12 122 6.7E-7 T 11-10-2018 AMK58_22160 471131f82e8134a64ca70a65515b37f4 337 Gene3D G3DSA:3.40.190.10 142 329 8.1E-30 T 11-10-2018 AMK58_15120 fb85fb79d51b91262aaa8824d735373b 328 Pfam PF16868 NMT1-like family 36 325 5.0E-93 T 11-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family AMK58_15120 fb85fb79d51b91262aaa8824d735373b 328 Gene3D G3DSA:3.40.190.10 124 260 3.3E-108 T 11-10-2018 AMK58_15120 fb85fb79d51b91262aaa8824d735373b 328 Gene3D G3DSA:3.40.190.10 36 325 3.3E-108 T 11-10-2018 AMK58_15120 fb85fb79d51b91262aaa8824d735373b 328 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 8 325 1.1E-108 T 11-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family AMK58_15120 fb85fb79d51b91262aaa8824d735373b 328 SUPERFAMILY SSF53850 31 327 1.11E-72 T 11-10-2018 AMK58_16535 c0c5a83f4d115f03fc008caa2d2cf63c 339 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_16535 c0c5a83f4d115f03fc008caa2d2cf63c 339 SUPERFAMILY SSF52540 17 252 1.91E-83 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_16535 c0c5a83f4d115f03fc008caa2d2cf63c 339 Pfam PF08402 TOBE domain 261 335 1.0E-12 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMK58_16535 c0c5a83f4d115f03fc008caa2d2cf63c 339 Gene3D G3DSA:3.40.50.300 11 250 9.5E-70 T 11-10-2018 AMK58_16535 c0c5a83f4d115f03fc008caa2d2cf63c 339 Pfam PF00005 ABC transporter 33 174 3.6E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_16535 c0c5a83f4d115f03fc008caa2d2cf63c 339 SUPERFAMILY SSF50331 245 335 2.89E-11 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMK58_16535 c0c5a83f4d115f03fc008caa2d2cf63c 339 SMART SM00382 41 224 9.4E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_23555 6f6e23f29e20c13dc563ed22e178a417 463 Gene3D G3DSA:3.40.190.10 139 255 9.3E-45 T 11-10-2018 AMK58_23555 6f6e23f29e20c13dc563ed22e178a417 463 SUPERFAMILY SSF53850 35 316 4.71E-49 T 11-10-2018 AMK58_23555 6f6e23f29e20c13dc563ed22e178a417 463 Gene3D G3DSA:3.40.190.10 38 307 9.3E-45 T 11-10-2018 AMK58_23555 6f6e23f29e20c13dc563ed22e178a417 463 Pfam PF13343 Bacterial extracellular solute-binding protein 85 300 2.1E-25 T 11-10-2018 AMK58_10410 71e866f556d1ad395b7cb842a48cd628 123 Gene3D G3DSA:2.40.50.140 1 123 4.2E-65 T 11-10-2018 AMK58_10410 71e866f556d1ad395b7cb842a48cd628 123 PRINTS PR01034 Ribosomal protein S12 signature 27 42 1.9E-62 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_10410 71e866f556d1ad395b7cb842a48cd628 123 PRINTS PR01034 Ribosomal protein S12 signature 58 77 1.9E-62 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_10410 71e866f556d1ad395b7cb842a48cd628 123 PRINTS PR01034 Ribosomal protein S12 signature 42 57 1.9E-62 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_10410 71e866f556d1ad395b7cb842a48cd628 123 PRINTS PR01034 Ribosomal protein S12 signature 77 94 1.9E-62 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_10410 71e866f556d1ad395b7cb842a48cd628 123 PRINTS PR01034 Ribosomal protein S12 signature 94 110 1.9E-62 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_10410 71e866f556d1ad395b7cb842a48cd628 123 PRINTS PR01034 Ribosomal protein S12 signature 110 122 1.9E-62 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_10410 71e866f556d1ad395b7cb842a48cd628 123 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_10410 71e866f556d1ad395b7cb842a48cd628 123 SUPERFAMILY SSF50249 2 123 7.54E-54 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_10410 71e866f556d1ad395b7cb842a48cd628 123 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 39.821 T 11-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_10410 71e866f556d1ad395b7cb842a48cd628 123 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 123 1.6E-69 T 11-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_10410 71e866f556d1ad395b7cb842a48cd628 123 PIRSF PIRSF002133 1 123 3.0E-55 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_10410 71e866f556d1ad395b7cb842a48cd628 123 Pfam PF00164 Ribosomal protein S12/S23 13 123 4.4E-44 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_08815 f974c479a335b7e355ff40d5eaccae87 205 Gene3D G3DSA:3.10.450.710 31 204 7.7E-39 T 11-10-2018 AMK58_08815 f974c479a335b7e355ff40d5eaccae87 205 Pfam PF05494 MlaC protein 40 199 2.1E-47 T 11-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC AMK58_08815 f974c479a335b7e355ff40d5eaccae87 205 PIRSF PIRSF004649 2 205 1.7E-39 T 11-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC AMK58_15220 0c410151e39739be7178fc7574dd688f 304 Pfam PF00701 Dihydrodipicolinate synthetase family 5 289 3.4E-53 T 11-10-2018 IPR002220 DapA-like GO:0016829 AMK58_15220 0c410151e39739be7178fc7574dd688f 304 Gene3D G3DSA:3.20.20.70 1 297 1.1E-80 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_15220 0c410151e39739be7178fc7574dd688f 304 SMART SM01130 4 292 5.4E-77 T 11-10-2018 IPR002220 DapA-like GO:0016829 AMK58_15220 0c410151e39739be7178fc7574dd688f 304 PIRSF PIRSF001365 1 301 2.6E-68 T 11-10-2018 IPR002220 DapA-like GO:0016829 AMK58_15220 0c410151e39739be7178fc7574dd688f 304 PRINTS PR00146 Dihydrodipicolinate synthase signature 74 92 1.1E-13 T 11-10-2018 IPR002220 DapA-like GO:0016829 AMK58_15220 0c410151e39739be7178fc7574dd688f 304 PRINTS PR00146 Dihydrodipicolinate synthase signature 38 59 1.1E-13 T 11-10-2018 IPR002220 DapA-like GO:0016829 AMK58_15220 0c410151e39739be7178fc7574dd688f 304 PRINTS PR00146 Dihydrodipicolinate synthase signature 107 123 1.1E-13 T 11-10-2018 IPR002220 DapA-like GO:0016829 AMK58_15220 0c410151e39739be7178fc7574dd688f 304 PRINTS PR00146 Dihydrodipicolinate synthase signature 132 149 1.1E-13 T 11-10-2018 IPR002220 DapA-like GO:0016829 AMK58_15220 0c410151e39739be7178fc7574dd688f 304 SUPERFAMILY SSF51569 2 290 1.05E-73 T 11-10-2018 AMK58_00375 d97d10e901c0c0932f79a600233a548f 119 SUPERFAMILY SSF52833 8 108 4.25E-27 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_00375 d97d10e901c0c0932f79a600233a548f 119 Gene3D G3DSA:3.40.30.10 9 112 1.1E-30 T 11-10-2018 AMK58_07810 74992eb162d109d5e222343e80cf42eb 264 Gene3D G3DSA:3.60.40.10 2 260 5.9E-59 T 11-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AMK58_07810 74992eb162d109d5e222343e80cf42eb 264 SUPERFAMILY SSF81606 12 259 1.22E-54 T 11-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AMK58_07810 74992eb162d109d5e222343e80cf42eb 264 SMART SM00332 5 257 3.2E-22 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AMK58_07810 74992eb162d109d5e222343e80cf42eb 264 Pfam PF13672 Protein phosphatase 2C 19 221 7.4E-14 T 11-10-2018 AMK58_07810 74992eb162d109d5e222343e80cf42eb 264 SMART SM00331 14 259 1.1E-27 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AMK58_13740 bbfaa4bb614cf01211d3294cce7aeb6d 492 SUPERFAMILY SSF58104 257 486 6.93E-47 T 11-10-2018 AMK58_13740 bbfaa4bb614cf01211d3294cce7aeb6d 492 Gene3D G3DSA:1.10.287.950 240 489 3.9E-42 T 11-10-2018 AMK58_13740 bbfaa4bb614cf01211d3294cce7aeb6d 492 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 378 407 4.2E-19 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_13740 bbfaa4bb614cf01211d3294cce7aeb6d 492 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 349 376 4.2E-19 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_13740 bbfaa4bb614cf01211d3294cce7aeb6d 492 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 272 301 4.2E-19 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_13740 bbfaa4bb614cf01211d3294cce7aeb6d 492 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 326 478 5.6E-31 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_13740 bbfaa4bb614cf01211d3294cce7aeb6d 492 SMART SM00091 135 201 0.018 T 11-10-2018 IPR000014 PAS domain AMK58_13740 bbfaa4bb614cf01211d3294cce7aeb6d 492 SMART SM00091 12 81 19.0 T 11-10-2018 IPR000014 PAS domain AMK58_13740 bbfaa4bb614cf01211d3294cce7aeb6d 492 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 139 248 8.3E-17 T 11-10-2018 IPR000014 PAS domain AMK58_13740 bbfaa4bb614cf01211d3294cce7aeb6d 492 Pfam PF08447 PAS fold 156 241 3.1E-15 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 AMK58_13740 bbfaa4bb614cf01211d3294cce7aeb6d 492 Gene3D G3DSA:3.30.450.20 14 126 2.8E-31 T 11-10-2018 AMK58_13740 bbfaa4bb614cf01211d3294cce7aeb6d 492 Gene3D G3DSA:3.30.450.20 143 239 7.1E-20 T 11-10-2018 AMK58_13740 bbfaa4bb614cf01211d3294cce7aeb6d 492 SMART SM00283 251 491 4.9E-32 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_13740 bbfaa4bb614cf01211d3294cce7aeb6d 492 Pfam PF13188 PAS domain 17 60 0.061 T 11-10-2018 IPR000014 PAS domain AMK58_13740 bbfaa4bb614cf01211d3294cce7aeb6d 492 SMART SM00086 206 248 9.2E-4 T 11-10-2018 IPR001610 PAC motif AMK58_13740 bbfaa4bb614cf01211d3294cce7aeb6d 492 SUPERFAMILY SSF55785 142 245 2.23E-25 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_29130 6dd4bf2d7625f868ddb945d1a41820a3 274 Pfam PF02195 ParB-like nuclease domain 23 101 7.9E-17 T 11-10-2018 IPR003115 ParB/Sulfiredoxin AMK58_29130 6dd4bf2d7625f868ddb945d1a41820a3 274 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 22 192 1.3E-31 T 11-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 AMK58_29130 6dd4bf2d7625f868ddb945d1a41820a3 274 SUPERFAMILY SSF109709 101 199 3.66E-18 T 11-10-2018 AMK58_29130 6dd4bf2d7625f868ddb945d1a41820a3 274 Gene3D G3DSA:1.10.10.2830 97 201 8.5E-17 T 11-10-2018 AMK58_29130 6dd4bf2d7625f868ddb945d1a41820a3 274 SUPERFAMILY SSF110849 19 112 8.72E-22 T 11-10-2018 IPR036086 ParB/Sulfiredoxin superfamily AMK58_29130 6dd4bf2d7625f868ddb945d1a41820a3 274 Gene3D G3DSA:3.90.1530.30 32 93 2.1E-19 T 11-10-2018 AMK58_29130 6dd4bf2d7625f868ddb945d1a41820a3 274 SMART SM00470 19 109 1.6E-19 T 11-10-2018 IPR003115 ParB/Sulfiredoxin AMK58_17370 e2085c32c3c45f1d8830e1d4ec231638 295 Pfam PF03466 LysR substrate binding domain 89 291 3.9E-37 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_17370 e2085c32c3c45f1d8830e1d4ec231638 295 Gene3D G3DSA:3.40.190.290 92 293 7.3E-41 T 11-10-2018 AMK58_17370 e2085c32c3c45f1d8830e1d4ec231638 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 8.0E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_17370 e2085c32c3c45f1d8830e1d4ec231638 295 SUPERFAMILY SSF53850 90 294 6.23E-40 T 11-10-2018 AMK58_17370 e2085c32c3c45f1d8830e1d4ec231638 295 Gene3D G3DSA:1.10.10.10 3 90 2.0E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_17370 e2085c32c3c45f1d8830e1d4ec231638 295 SUPERFAMILY SSF46785 1 113 2.45E-24 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_07865 1bd3f6b7d1f1f18e646c94c2cfea6eb4 474 SUPERFAMILY SSF51905 21 444 1.12E-24 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_07865 1bd3f6b7d1f1f18e646c94c2cfea6eb4 474 Gene3D G3DSA:3.50.50.60 24 226 4.3E-13 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_07865 1bd3f6b7d1f1f18e646c94c2cfea6eb4 474 Pfam PF12831 FAD dependent oxidoreductase 28 462 1.4E-118 T 11-10-2018 IPR039649 Digeranylgeranylglycerophospholipid reductase, N-terminal AMK58_01750 a48da89303386616f83e12aa5b2fa29b 644 SUPERFAMILY SSF46785 581 637 7.34E-8 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_01750 a48da89303386616f83e12aa5b2fa29b 644 SUPERFAMILY SSF52540 313 501 6.8E-16 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_01750 a48da89303386616f83e12aa5b2fa29b 644 Gene3D G3DSA:3.40.50.300 306 530 2.2E-29 T 11-10-2018 AMK58_01750 a48da89303386616f83e12aa5b2fa29b 644 Pfam PF13481 AAA domain 308 474 2.6E-20 T 11-10-2018 AMK58_01750 a48da89303386616f83e12aa5b2fa29b 644 SMART SM00382 320 494 6.5E-4 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_01750 a48da89303386616f83e12aa5b2fa29b 644 Gene3D G3DSA:1.10.10.10 576 640 6.7E-6 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_01750 a48da89303386616f83e12aa5b2fa29b 644 PRINTS PR01874 DNA repair protein radA signature 312 340 4.3E-6 T 11-10-2018 AMK58_01750 a48da89303386616f83e12aa5b2fa29b 644 PRINTS PR01874 DNA repair protein radA signature 465 493 4.3E-6 T 11-10-2018 AMK58_00495 951090dd6212867efc18216b035a0f5f 254 SUPERFAMILY SSF51366 1 238 2.83E-72 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AMK58_00495 951090dd6212867efc18216b035a0f5f 254 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 2 238 36.005 T 11-10-2018 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 AMK58_00495 951090dd6212867efc18216b035a0f5f 254 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 3 234 1.3E-83 T 11-10-2018 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 AMK58_00495 951090dd6212867efc18216b035a0f5f 254 Gene3D G3DSA:3.20.20.70 1 240 3.3E-84 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_00495 951090dd6212867efc18216b035a0f5f 254 Pfam PF00977 Histidine biosynthesis protein 3 230 1.8E-78 T 11-10-2018 IPR006062 Histidine biosynthesis GO:0000105 AMK58_01165 1ae9c0c78b285fa9afa22d380f510101 397 SUPERFAMILY SSF47384 151 236 5.3E-22 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_01165 1ae9c0c78b285fa9afa22d380f510101 397 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 282 393 2.1E-24 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_01165 1ae9c0c78b285fa9afa22d380f510101 397 SMART SM00387 281 394 9.6E-33 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_01165 1ae9c0c78b285fa9afa22d380f510101 397 Gene3D G3DSA:1.10.287.130 137 233 9.2E-28 T 11-10-2018 AMK58_01165 1ae9c0c78b285fa9afa22d380f510101 397 Pfam PF00512 His Kinase A (phospho-acceptor) domain 167 235 1.4E-18 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_01165 1ae9c0c78b285fa9afa22d380f510101 397 Gene3D G3DSA:3.30.565.10 234 395 1.1E-38 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_01165 1ae9c0c78b285fa9afa22d380f510101 397 SMART SM00388 166 235 1.1E-21 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_01165 1ae9c0c78b285fa9afa22d380f510101 397 SUPERFAMILY SSF54631 34 140 1.24E-6 T 11-10-2018 AMK58_01165 1ae9c0c78b285fa9afa22d380f510101 397 PRINTS PR00344 Bacterial sensor protein C-terminal signature 378 391 1.3E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_01165 1ae9c0c78b285fa9afa22d380f510101 397 PRINTS PR00344 Bacterial sensor protein C-terminal signature 354 372 1.3E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_01165 1ae9c0c78b285fa9afa22d380f510101 397 PRINTS PR00344 Bacterial sensor protein C-terminal signature 319 333 1.3E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_01165 1ae9c0c78b285fa9afa22d380f510101 397 SUPERFAMILY SSF55874 224 392 3.01E-41 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_23220 9c6dfd4d6cd0f77137358d8b4071964a 409 Gene3D G3DSA:3.30.300.30 316 409 2.5E-13 T 11-10-2018 AMK58_23220 9c6dfd4d6cd0f77137358d8b4071964a 409 Pfam PF14535 AMP-binding enzyme C-terminal domain 324 399 4.2E-6 T 11-10-2018 IPR028154 AMP-dependent ligase, C-terminal AMK58_23220 9c6dfd4d6cd0f77137358d8b4071964a 409 Pfam PF00501 AMP-binding enzyme 139 276 1.3E-7 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMK58_23220 9c6dfd4d6cd0f77137358d8b4071964a 409 SUPERFAMILY SSF56801 111 381 7.85E-31 T 11-10-2018 AMK58_23220 9c6dfd4d6cd0f77137358d8b4071964a 409 Gene3D G3DSA:3.40.50.12780 2 315 2.1E-68 T 11-10-2018 AMK58_10320 b140e35dd620ecf1b24a2c09dd1497c2 101 Pfam PF00253 Ribosomal protein S14p/S29e 47 100 4.9E-26 T 11-10-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_10320 b140e35dd620ecf1b24a2c09dd1497c2 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 26.36 T 11-10-2018 IPR023036 Ribosomal protein S14, bacterial/plastid AMK58_10320 b140e35dd620ecf1b24a2c09dd1497c2 101 ProSitePatterns PS00527 Ribosomal protein S14 signature. 63 85 - T 11-10-2018 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10320 b140e35dd620ecf1b24a2c09dd1497c2 101 Gene3D G3DSA:4.10.830.10 42 101 1.8E-24 T 11-10-2018 AMK58_10320 b140e35dd620ecf1b24a2c09dd1497c2 101 SUPERFAMILY SSF57716 2 101 1.57E-37 T 11-10-2018 AMK58_12445 186640cebc5ae9a163ffe210341bbc5d 299 TIGRFAM TIGR00761 argB: acetylglutamate kinase 30 273 3.9E-80 T 11-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMK58_12445 186640cebc5ae9a163ffe210341bbc5d 299 PRINTS PR00474 Glutamate 5-kinase family signature 198 225 2.1E-8 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AMK58_12445 186640cebc5ae9a163ffe210341bbc5d 299 PRINTS PR00474 Glutamate 5-kinase family signature 60 74 2.1E-8 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AMK58_12445 186640cebc5ae9a163ffe210341bbc5d 299 PRINTS PR00474 Glutamate 5-kinase family signature 248 268 2.1E-8 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AMK58_12445 186640cebc5ae9a163ffe210341bbc5d 299 SUPERFAMILY SSF53633 7 297 7.46E-97 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMK58_12445 186640cebc5ae9a163ffe210341bbc5d 299 PIRSF PIRSF000728 14 298 3.9E-113 T 11-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMK58_12445 186640cebc5ae9a163ffe210341bbc5d 299 Hamap MF_00082 Acetylglutamate kinase [argB]. 28 291 50.486 T 11-10-2018 IPR037528 Acetylglutamate kinase ArgB GO:0003991|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMK58_12445 186640cebc5ae9a163ffe210341bbc5d 299 Gene3D G3DSA:3.40.1160.10 4 298 4.4E-102 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMK58_12445 186640cebc5ae9a163ffe210341bbc5d 299 Pfam PF00696 Amino acid kinase family 30 273 2.8E-52 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 AMK58_22685 ffb118ec5a826445d17e7d36e1608841 474 Pfam PF11870 Domain of unknown function (DUF3390) 384 470 1.3E-23 T 11-10-2018 IPR024569 4Fe-4S binding protein, C-terminal AMK58_22685 ffb118ec5a826445d17e7d36e1608841 474 Gene3D G3DSA:3.40.50.10420 124 280 8.1E-16 T 11-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily AMK58_22685 ffb118ec5a826445d17e7d36e1608841 474 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 362 373 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMK58_22685 ffb118ec5a826445d17e7d36e1608841 474 Gene3D G3DSA:1.10.1060.10 301 390 7.6E-6 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AMK58_22685 ffb118ec5a826445d17e7d36e1608841 474 TIGRFAM TIGR00273 TIGR00273: iron-sulfur cluster-binding protein 16 455 7.8E-147 T 11-10-2018 IPR004452 4Fe-4S binding protein GO:0019516 AMK58_22685 ffb118ec5a826445d17e7d36e1608841 474 SUPERFAMILY SSF100950 63 294 3.89E-41 T 11-10-2018 IPR037171 NagB/RpiA transferase-like AMK58_22685 ffb118ec5a826445d17e7d36e1608841 474 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 312 323 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMK58_22685 ffb118ec5a826445d17e7d36e1608841 474 Pfam PF02589 LUD domain 68 293 3.5E-56 T 11-10-2018 IPR003741 LUD domain AMK58_22685 ffb118ec5a826445d17e7d36e1608841 474 Pfam PF13183 4Fe-4S dicluster domain 310 376 1.0E-11 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMK58_22685 ffb118ec5a826445d17e7d36e1608841 474 SUPERFAMILY SSF46548 305 390 4.97E-18 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AMK58_05155 c1889329f312545e59fa26016bc626c8 456 Pfam PF00460 Flagella basal body rod protein 7 37 6.5E-8 T 11-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 AMK58_05155 c1889329f312545e59fa26016bc626c8 456 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 6 436 3.9E-51 T 11-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G AMK58_05155 c1889329f312545e59fa26016bc626c8 456 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 11-10-2018 IPR019776 Flagellar basal body rod protein, conserved site AMK58_05155 c1889329f312545e59fa26016bc626c8 456 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 366 454 5.9E-15 T 11-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain AMK58_05155 c1889329f312545e59fa26016bc626c8 456 SUPERFAMILY SSF117143 81 390 5.62E-36 T 11-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like AMK58_23170 76d184576ba0f1b866af16a6d0656cea 139 SUPERFAMILY SSF52172 6 129 1.85E-29 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_23170 76d184576ba0f1b866af16a6d0656cea 139 Pfam PF00072 Response regulator receiver domain 10 124 4.8E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_23170 76d184576ba0f1b866af16a6d0656cea 139 Gene3D G3DSA:3.40.50.2300 3 133 2.3E-28 T 11-10-2018 AMK58_23170 76d184576ba0f1b866af16a6d0656cea 139 SMART SM00448 8 124 7.4E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_28065 3325faddf66d224e5b6c25cae1b7d41b 294 Pfam PF03466 LysR substrate binding domain 91 293 5.2E-35 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_28065 3325faddf66d224e5b6c25cae1b7d41b 294 SUPERFAMILY SSF53850 85 293 6.52E-38 T 11-10-2018 AMK58_28065 3325faddf66d224e5b6c25cae1b7d41b 294 SUPERFAMILY SSF46785 6 90 9.98E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_28065 3325faddf66d224e5b6c25cae1b7d41b 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 2.0E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_28065 3325faddf66d224e5b6c25cae1b7d41b 294 Gene3D G3DSA:3.40.190.290 94 294 1.1E-49 T 11-10-2018 AMK58_28065 3325faddf66d224e5b6c25cae1b7d41b 294 Gene3D G3DSA:1.10.10.10 5 91 3.0E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_11255 969023e822ca4b7dd071db804be6d005 320 Gene3D G3DSA:3.40.710.10 145 320 8.5E-42 T 11-10-2018 AMK58_11255 969023e822ca4b7dd071db804be6d005 320 Gene3D G3DSA:3.40.710.10 1 144 2.7E-54 T 11-10-2018 AMK58_11255 969023e822ca4b7dd071db804be6d005 320 SUPERFAMILY SSF56601 1 319 8.82E-77 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMK58_11255 969023e822ca4b7dd071db804be6d005 320 Pfam PF00144 Beta-lactamase 143 304 2.4E-16 T 11-10-2018 IPR001466 Beta-lactamase-related AMK58_11255 969023e822ca4b7dd071db804be6d005 320 Pfam PF00144 Beta-lactamase 2 142 2.2E-37 T 11-10-2018 IPR001466 Beta-lactamase-related AMK58_25880 422d392842c00ce141160333aa7d16eb 320 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 11 317 2.8E-96 T 11-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 AMK58_25880 422d392842c00ce141160333aa7d16eb 320 Pfam PF00294 pfkB family carbohydrate kinase 19 303 5.1E-51 T 11-10-2018 IPR011611 Carbohydrate kinase PfkB AMK58_25880 422d392842c00ce141160333aa7d16eb 320 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 45 69 - T 11-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AMK58_25880 422d392842c00ce141160333aa7d16eb 320 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 258 271 - T 11-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AMK58_25880 422d392842c00ce141160333aa7d16eb 320 TIGRFAM TIGR03828 pfkB: 1-phosphofructokinase 11 318 4.5E-95 T 11-10-2018 IPR022463 Fructose 1-phosphate kinase GO:0008662 KEGG: 00051+2.7.1.56 AMK58_25880 422d392842c00ce141160333aa7d16eb 320 PIRSF PIRSF000535 9 320 7.7E-88 T 11-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 AMK58_25880 422d392842c00ce141160333aa7d16eb 320 Gene3D G3DSA:3.40.1190.20 8 320 3.7E-96 T 11-10-2018 IPR029056 Ribokinase-like AMK58_25880 422d392842c00ce141160333aa7d16eb 320 SUPERFAMILY SSF53613 12 306 1.87E-60 T 11-10-2018 IPR029056 Ribokinase-like AMK58_12395 2be498fe167b632315c1ed12b209a560 389 Pfam PF16822 SGNH hydrolase-like domain, acetyltransferase AlgX 235 356 1.8E-6 T 11-10-2018 IPR031811 AlgX/AlgJ, SGNH hydrolase-like domain AMK58_16570 09fc941e8461afa587af56fed31b024c 293 Gene3D G3DSA:1.20.58.1850 175 283 4.9E-6 T 11-10-2018 AMK58_16570 09fc941e8461afa587af56fed31b024c 293 SUPERFAMILY SSF48097 180 278 2.69E-7 T 11-10-2018 IPR036305 RGS domain superfamily AMK58_15140 9fd29e0cdd59ac0e55f9c222c605ba57 488 Gene3D G3DSA:3.40.50.720 7 265 4.1E-53 T 11-10-2018 AMK58_15140 9fd29e0cdd59ac0e55f9c222c605ba57 488 SUPERFAMILY SSF48179 275 474 2.41E-38 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMK58_15140 9fd29e0cdd59ac0e55f9c222c605ba57 488 SUPERFAMILY SSF51735 12 259 2.87E-64 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_15140 9fd29e0cdd59ac0e55f9c222c605ba57 488 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 18 173 3.0E-20 T 11-10-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 AMK58_15140 9fd29e0cdd59ac0e55f9c222c605ba57 488 Gene3D G3DSA:1.10.1040.10 274 478 2.3E-45 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMK58_15140 9fd29e0cdd59ac0e55f9c222c605ba57 488 PRINTS PR00084 Mannitol dehydrogenase signature 206 219 4.5E-6 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AMK58_15140 9fd29e0cdd59ac0e55f9c222c605ba57 488 PRINTS PR00084 Mannitol dehydrogenase signature 165 178 4.5E-6 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AMK58_15140 9fd29e0cdd59ac0e55f9c222c605ba57 488 PRINTS PR00084 Mannitol dehydrogenase signature 236 251 4.5E-6 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AMK58_15140 9fd29e0cdd59ac0e55f9c222c605ba57 488 PRINTS PR00084 Mannitol dehydrogenase signature 19 29 4.5E-6 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AMK58_15140 9fd29e0cdd59ac0e55f9c222c605ba57 488 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 206 407 1.4E-42 T 11-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 AMK58_19400 057424fb7cf8340473d8ebc606bd1ebc 383 SUPERFAMILY SSF51905 6 374 1.68E-41 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_19400 057424fb7cf8340473d8ebc606bd1ebc 383 Gene3D G3DSA:3.50.50.60 7 355 1.5E-118 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_19400 057424fb7cf8340473d8ebc606bd1ebc 383 Pfam PF01266 FAD dependent oxidoreductase 7 354 7.5E-52 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMK58_19400 057424fb7cf8340473d8ebc606bd1ebc 383 Gene3D G3DSA:3.30.9.10 86 315 1.5E-118 T 11-10-2018 AMK58_15925 9cf2f710f30bc7111d196fd7a12342a9 204 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 61 91 - T 11-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 AMK58_15925 9cf2f710f30bc7111d196fd7a12342a9 204 Gene3D G3DSA:3.40.50.150 41 176 3.8E-11 T 11-10-2018 AMK58_15925 9cf2f710f30bc7111d196fd7a12342a9 204 SUPERFAMILY SSF53335 27 169 5.16E-18 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_16930 2fba2b6f8fad0f45fefd5295c314524c 158 Gene3D G3DSA:3.30.530.20 20 157 1.8E-36 T 11-10-2018 IPR023393 START-like domain superfamily AMK58_16930 2fba2b6f8fad0f45fefd5295c314524c 158 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 21 155 1.1E-27 T 11-10-2018 IPR019587 Polyketide cyclase/dehydrase AMK58_16930 2fba2b6f8fad0f45fefd5295c314524c 158 SUPERFAMILY SSF55961 22 155 1.34E-27 T 11-10-2018 AMK58_08710 977c21e5e3ccb00df02da97de185de39 88 Pfam PF04324 BFD-like [2Fe-2S] binding domain 2 48 9.9E-11 T 11-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain AMK58_08710 977c21e5e3ccb00df02da97de185de39 88 Gene3D G3DSA:1.10.10.1100 1 56 6.2E-15 T 11-10-2018 AMK58_06800 3b51bd9cdd1e40b0c0ab1897e84b0698 485 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 162 178 4.5E-21 T 11-10-2018 AMK58_06800 3b51bd9cdd1e40b0c0ab1897e84b0698 485 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 186 200 4.5E-21 T 11-10-2018 AMK58_06800 3b51bd9cdd1e40b0c0ab1897e84b0698 485 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 298 322 4.5E-21 T 11-10-2018 AMK58_06800 3b51bd9cdd1e40b0c0ab1897e84b0698 485 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 269 281 4.5E-21 T 11-10-2018 AMK58_06800 3b51bd9cdd1e40b0c0ab1897e84b0698 485 SUPERFAMILY SSF53335 4 481 1.17E-113 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_06800 3b51bd9cdd1e40b0c0ab1897e84b0698 485 Pfam PF12161 HsdM N-terminal domain 4 130 2.3E-16 T 11-10-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain AMK58_06800 3b51bd9cdd1e40b0c0ab1897e84b0698 485 Pfam PF02384 N-6 DNA Methylase 140 446 2.1E-73 T 11-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 AMK58_06800 3b51bd9cdd1e40b0c0ab1897e84b0698 485 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 272 278 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMK58_06800 3b51bd9cdd1e40b0c0ab1897e84b0698 485 Gene3D G3DSA:1.20.1260.30 1 136 2.0E-45 T 11-10-2018 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily AMK58_06800 3b51bd9cdd1e40b0c0ab1897e84b0698 485 Gene3D G3DSA:3.40.50.150 137 452 4.5E-78 T 11-10-2018 AMK58_21280 f8705663c8e404d309d4a982f4d74c59 277 Gene3D G3DSA:3.20.20.70 114 267 2.6E-103 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_21280 f8705663c8e404d309d4a982f4d74c59 277 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 111 276 3.0E-61 T 11-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 AMK58_21280 f8705663c8e404d309d4a982f4d74c59 277 SUPERFAMILY SSF54675 4 110 2.75E-28 T 11-10-2018 AMK58_21280 f8705663c8e404d309d4a982f4d74c59 277 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 22 109 5.5E-23 T 11-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 AMK58_21280 f8705663c8e404d309d4a982f4d74c59 277 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 11 277 1.4E-96 T 11-10-2018 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 AMK58_21280 f8705663c8e404d309d4a982f4d74c59 277 Gene3D G3DSA:3.90.1170.20 13 276 2.6E-103 T 11-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 AMK58_21280 f8705663c8e404d309d4a982f4d74c59 277 PIRSF PIRSF006250 4 277 2.4E-90 T 11-10-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 AMK58_21280 f8705663c8e404d309d4a982f4d74c59 277 SUPERFAMILY SSF51690 111 277 6.67E-59 T 11-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 AMK58_11900 32f7bad1c1c23afe8ce7dae5efd40f03 260 SUPERFAMILY SSF56655 8 258 2.62E-71 T 11-10-2018 AMK58_11900 32f7bad1c1c23afe8ce7dae5efd40f03 260 Gene3D G3DSA:3.30.540.10 7 141 5.2E-43 T 11-10-2018 AMK58_11900 32f7bad1c1c23afe8ce7dae5efd40f03 260 PRINTS PR00377 Inositol monophosphatase superfamily signature 63 79 2.0E-14 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMK58_11900 32f7bad1c1c23afe8ce7dae5efd40f03 260 PRINTS PR00377 Inositol monophosphatase superfamily signature 83 99 2.0E-14 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMK58_11900 32f7bad1c1c23afe8ce7dae5efd40f03 260 PRINTS PR00377 Inositol monophosphatase superfamily signature 41 61 2.0E-14 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMK58_11900 32f7bad1c1c23afe8ce7dae5efd40f03 260 PRINTS PR00377 Inositol monophosphatase superfamily signature 207 231 2.0E-14 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMK58_11900 32f7bad1c1c23afe8ce7dae5efd40f03 260 Pfam PF00459 Inositol monophosphatase family 8 257 4.1E-52 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMK58_11900 32f7bad1c1c23afe8ce7dae5efd40f03 260 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 83 96 - T 11-10-2018 IPR020583 Inositol monophosphatase, metal-binding site AMK58_11900 32f7bad1c1c23afe8ce7dae5efd40f03 260 Gene3D G3DSA:3.40.190.80 146 259 5.9E-30 T 11-10-2018 AMK58_11900 32f7bad1c1c23afe8ce7dae5efd40f03 260 TIGRFAM TIGR02067 his_9_HisN: histidinol-phosphatase 11 258 3.4E-91 T 11-10-2018 IPR011809 Histidinol-phosphate phosphatase, putative, inositol monophosphatase GO:0004401 KEGG: 00340+3.1.3.15 AMK58_11625 10a0e39b80b573579d6488a94a3c5be5 252 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 226 246 2.1E-11 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AMK58_11625 10a0e39b80b573579d6488a94a3c5be5 252 SMART SM00382 30 224 2.6E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_11625 10a0e39b80b573579d6488a94a3c5be5 252 SUPERFAMILY SSF52540 4 246 8.15E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_11625 10a0e39b80b573579d6488a94a3c5be5 252 Pfam PF00005 ABC transporter 22 177 7.3E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_11625 10a0e39b80b573579d6488a94a3c5be5 252 Gene3D G3DSA:3.40.50.300 5 251 2.6E-60 T 11-10-2018 AMK58_10630 a87d10bc1f0dd73be3b7495b73ab6a7f 260 SUPERFAMILY SSF161098 51 237 4.58E-32 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_10630 a87d10bc1f0dd73be3b7495b73ab6a7f 260 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 76 243 1.5E-26 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_10630 a87d10bc1f0dd73be3b7495b73ab6a7f 260 Gene3D G3DSA:1.10.3720.10 49 245 4.0E-27 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_23610 4318d7a2b008851a61a50304d1dd8c66 721 Pfam PF01584 CheW-like domain 595 720 4.7E-16 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMK58_23610 4318d7a2b008851a61a50304d1dd8c66 721 Gene3D G3DSA:1.20.120.160 1 129 1.2E-26 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMK58_23610 4318d7a2b008851a61a50304d1dd8c66 721 SUPERFAMILY SSF47226 2 111 3.14E-20 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMK58_23610 4318d7a2b008851a61a50304d1dd8c66 721 PRINTS PR00344 Bacterial sensor protein C-terminal signature 550 568 3.9E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_23610 4318d7a2b008851a61a50304d1dd8c66 721 PRINTS PR00344 Bacterial sensor protein C-terminal signature 492 506 3.9E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_23610 4318d7a2b008851a61a50304d1dd8c66 721 PRINTS PR00344 Bacterial sensor protein C-terminal signature 574 587 3.9E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_23610 4318d7a2b008851a61a50304d1dd8c66 721 SMART SM00387 447 590 2.9E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_23610 4318d7a2b008851a61a50304d1dd8c66 721 SMART SM00260 582 721 4.4E-19 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMK58_23610 4318d7a2b008851a61a50304d1dd8c66 721 SUPERFAMILY SSF50341 589 721 3.66E-23 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 AMK58_23610 4318d7a2b008851a61a50304d1dd8c66 721 SMART SM01231 334 402 9.2E-15 T 11-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 AMK58_23610 4318d7a2b008851a61a50304d1dd8c66 721 SUPERFAMILY SSF47384 335 403 6.28E-11 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_23610 4318d7a2b008851a61a50304d1dd8c66 721 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 451 589 1.2E-13 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_23610 4318d7a2b008851a61a50304d1dd8c66 721 Gene3D G3DSA:1.10.287.560 334 402 5.2E-12 T 11-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 AMK58_23610 4318d7a2b008851a61a50304d1dd8c66 721 SUPERFAMILY SSF55874 405 588 2.49E-38 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_23610 4318d7a2b008851a61a50304d1dd8c66 721 SMART SM00073 1 98 1.4E-13 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMK58_23610 4318d7a2b008851a61a50304d1dd8c66 721 Gene3D G3DSA:2.30.30.40 590 716 1.4E-24 T 11-10-2018 AMK58_23610 4318d7a2b008851a61a50304d1dd8c66 721 Gene3D G3DSA:2.40.50.180 613 676 1.4E-24 T 11-10-2018 AMK58_23610 4318d7a2b008851a61a50304d1dd8c66 721 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 335 401 1.2E-15 T 11-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 AMK58_23610 4318d7a2b008851a61a50304d1dd8c66 721 Pfam PF01627 Hpt domain 4 92 4.2E-11 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMK58_23610 4318d7a2b008851a61a50304d1dd8c66 721 Gene3D G3DSA:3.30.565.10 403 589 5.2E-50 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_05405 39bf8f085080202e133bd51e348c354a 180 PIRSF PIRSF004749 1 179 1.3E-55 T 11-10-2018 IPR023635 Peptide deformylase AMK58_05405 39bf8f085080202e133bd51e348c354a 180 Gene3D G3DSA:3.90.45.10 1 175 7.2E-60 T 11-10-2018 IPR036821 Peptide deformylase superfamily AMK58_05405 39bf8f085080202e133bd51e348c354a 180 PRINTS PR01576 Peptide deformylase signature 96 107 1.9E-31 T 11-10-2018 IPR023635 Peptide deformylase AMK58_05405 39bf8f085080202e133bd51e348c354a 180 PRINTS PR01576 Peptide deformylase signature 34 63 1.9E-31 T 11-10-2018 IPR023635 Peptide deformylase AMK58_05405 39bf8f085080202e133bd51e348c354a 180 PRINTS PR01576 Peptide deformylase signature 127 156 1.9E-31 T 11-10-2018 IPR023635 Peptide deformylase AMK58_05405 39bf8f085080202e133bd51e348c354a 180 PRINTS PR01576 Peptide deformylase signature 108 126 1.9E-31 T 11-10-2018 IPR023635 Peptide deformylase AMK58_05405 39bf8f085080202e133bd51e348c354a 180 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 4 162 7.6E-39 T 11-10-2018 IPR023635 Peptide deformylase AMK58_05405 39bf8f085080202e133bd51e348c354a 180 Hamap MF_00163 Peptide deformylase [def]. 2 169 27.521 T 11-10-2018 IPR023635 Peptide deformylase AMK58_05405 39bf8f085080202e133bd51e348c354a 180 Pfam PF01327 Polypeptide deformylase 5 157 9.1E-48 T 11-10-2018 IPR023635 Peptide deformylase AMK58_05405 39bf8f085080202e133bd51e348c354a 180 SUPERFAMILY SSF56420 1 165 8.51E-57 T 11-10-2018 IPR036821 Peptide deformylase superfamily AMK58_10000 19933c738038fc3e734990978742c42b 321 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 41 306 2.0E-69 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AMK58_10000 19933c738038fc3e734990978742c42b 321 Gene3D G3DSA:3.40.50.1100 31 224 3.7E-76 T 11-10-2018 AMK58_10000 19933c738038fc3e734990978742c42b 321 Gene3D G3DSA:3.40.50.1100 70 166 3.7E-76 T 11-10-2018 AMK58_10000 19933c738038fc3e734990978742c42b 321 Gene3D G3DSA:3.40.50.1100 227 311 3.8E-18 T 11-10-2018 AMK58_10000 19933c738038fc3e734990978742c42b 321 SUPERFAMILY SSF53686 29 313 4.06E-79 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMK58_09405 841e1ccd619f1a83a2db67d938cc3281 124 SUPERFAMILY SSF51230 3 121 1.94E-43 T 11-10-2018 IPR011053 Single hybrid motif AMK58_09405 841e1ccd619f1a83a2db67d938cc3281 124 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 3 121 2.9E-42 T 11-10-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 AMK58_09405 841e1ccd619f1a83a2db67d938cc3281 124 Pfam PF01597 Glycine cleavage H-protein 4 121 5.2E-42 T 11-10-2018 IPR033753 Glycine cleavage system H-protein/Simiate AMK58_09405 841e1ccd619f1a83a2db67d938cc3281 124 Gene3D G3DSA:2.40.50.100 2 123 5.4E-48 T 11-10-2018 AMK58_09405 841e1ccd619f1a83a2db67d938cc3281 124 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 43 72 - T 11-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 AMK58_09405 841e1ccd619f1a83a2db67d938cc3281 124 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 2 121 37.106 T 11-10-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 AMK58_13625 41487c500e61d7503411831eba5bcdd2 635 SUPERFAMILY SSF53098 233 430 9.71E-16 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMK58_13625 41487c500e61d7503411831eba5bcdd2 635 Pfam PF09299 Mu transposase, C-terminal 461 518 2.5E-11 T 11-10-2018 IPR015378 Transposase-like, Mu, C-terminal AMK58_13625 41487c500e61d7503411831eba5bcdd2 635 Gene3D G3DSA:3.30.420.10 233 441 6.6E-26 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMK58_13625 41487c500e61d7503411831eba5bcdd2 635 Pfam PF00665 Integrase core domain 236 372 3.4E-13 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMK58_18320 03e812b6149650ad1c648622ebd00138 252 Pfam PF02348 Cytidylyltransferase 11 182 6.9E-21 T 11-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 AMK58_18320 03e812b6149650ad1c648622ebd00138 252 SUPERFAMILY SSF53448 11 214 1.43E-25 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_18320 03e812b6149650ad1c648622ebd00138 252 Gene3D G3DSA:3.90.550.10 9 217 2.0E-30 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_11855 04caa907c528874fd8d264d4e4d1f506 360 Pfam PF13649 Methyltransferase domain 195 290 6.6E-18 T 11-10-2018 AMK58_11855 04caa907c528874fd8d264d4e4d1f506 360 Gene3D G3DSA:3.40.50.150 135 352 5.8E-29 T 11-10-2018 AMK58_11855 04caa907c528874fd8d264d4e4d1f506 360 SUPERFAMILY SSF53335 153 345 5.68E-32 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_01480 072c25506218d0ee8d90632c605692f3 329 Gene3D G3DSA:1.20.58.340 253 329 2.8E-27 T 11-10-2018 AMK58_01480 072c25506218d0ee8d90632c605692f3 329 Pfam PF01544 CorA-like Mg2+ transporter protein 27 325 1.9E-55 T 11-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 AMK58_01480 072c25506218d0ee8d90632c605692f3 329 SUPERFAMILY SSF144083 264 326 3.14E-21 T 11-10-2018 AMK58_01480 072c25506218d0ee8d90632c605692f3 329 SUPERFAMILY SSF143865 1 268 1.05E-35 T 11-10-2018 AMK58_18760 0d02f5ebde63b7b48b9449576a3356f5 185 SUPERFAMILY SSF141452 4 166 2.88E-14 T 11-10-2018 IPR036624 Hcp1-like superfamily AMK58_18760 0d02f5ebde63b7b48b9449576a3356f5 185 Pfam PF05638 Type VI secretion system effector, Hcp 7 163 5.1E-13 T 11-10-2018 IPR008514 Type VI secretion system effector, Hcp AMK58_18760 0d02f5ebde63b7b48b9449576a3356f5 185 Gene3D G3DSA:2.30.110.20 3 184 2.3E-15 T 11-10-2018 IPR036624 Hcp1-like superfamily AMK58_16310 2cc04fa7f52a971ec23f4e517bd137c7 336 Gene3D G3DSA:3.40.50.720 107 304 5.3E-90 T 11-10-2018 AMK58_16310 2cc04fa7f52a971ec23f4e517bd137c7 336 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 155 182 - T 11-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 AMK58_16310 2cc04fa7f52a971ec23f4e517bd137c7 336 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 26 334 9.9E-23 T 11-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 AMK58_16310 2cc04fa7f52a971ec23f4e517bd137c7 336 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 204 226 - T 11-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AMK58_16310 2cc04fa7f52a971ec23f4e517bd137c7 336 Gene3D G3DSA:3.40.50.720 27 327 5.3E-90 T 11-10-2018 AMK58_16310 2cc04fa7f52a971ec23f4e517bd137c7 336 SUPERFAMILY SSF52283 21 135 9.64E-24 T 11-10-2018 AMK58_16310 2cc04fa7f52a971ec23f4e517bd137c7 336 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 115 303 2.9E-45 T 11-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AMK58_16310 2cc04fa7f52a971ec23f4e517bd137c7 336 SUPERFAMILY SSF51735 109 303 4.17E-46 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_27635 c3fb70c4498378df7edd0feef78b59cb 467 Hamap MF_00675 Uronate isomerase [uxaC]. 1 467 39.718 T 11-10-2018 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 AMK58_27635 c3fb70c4498378df7edd0feef78b59cb 467 SUPERFAMILY SSF51556 1 466 6.12E-163 T 11-10-2018 IPR032466 Metal-dependent hydrolase AMK58_27635 c3fb70c4498378df7edd0feef78b59cb 467 Gene3D G3DSA:3.20.20.140 1 55 2.7E-17 T 11-10-2018 AMK58_27635 c3fb70c4498378df7edd0feef78b59cb 467 Gene3D G3DSA:3.20.20.140 114 467 7.2E-119 T 11-10-2018 AMK58_27635 c3fb70c4498378df7edd0feef78b59cb 467 Pfam PF02614 Glucuronate isomerase 14 463 6.1E-78 T 11-10-2018 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 AMK58_06435 f9d60e99eefe2a4ec4f74d06e77c45c2 110 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 3 71 7.1E-21 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AMK58_06435 f9d60e99eefe2a4ec4f74d06e77c45c2 110 Pfam PF03840 Preprotein translocase SecG subunit 4 70 2.7E-18 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AMK58_06435 f9d60e99eefe2a4ec4f74d06e77c45c2 110 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 2.6E-14 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AMK58_06435 f9d60e99eefe2a4ec4f74d06e77c45c2 110 PRINTS PR01651 Protein-export SecG membrane protein signature 52 74 2.6E-14 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AMK58_26960 c3f3457e07651ecfab3709577a6f70a9 373 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 119 132 2.5E-5 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AMK58_26960 c3f3457e07651ecfab3709577a6f70a9 373 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 278 297 2.5E-5 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AMK58_26960 c3f3457e07651ecfab3709577a6f70a9 373 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 174 188 2.5E-5 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AMK58_26960 c3f3457e07651ecfab3709577a6f70a9 373 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 72 93 2.5E-5 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AMK58_26960 c3f3457e07651ecfab3709577a6f70a9 373 Pfam PF13416 Bacterial extracellular solute-binding protein 69 330 1.4E-30 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMK58_26960 c3f3457e07651ecfab3709577a6f70a9 373 Gene3D G3DSA:3.40.190.10 63 342 3.4E-57 T 11-10-2018 AMK58_26960 c3f3457e07651ecfab3709577a6f70a9 373 Gene3D G3DSA:3.40.190.10 159 343 3.4E-57 T 11-10-2018 AMK58_26960 c3f3457e07651ecfab3709577a6f70a9 373 SUPERFAMILY SSF53850 47 373 1.56E-52 T 11-10-2018 AMK58_16205 50854ef66383c8975b11fab0f54c6b3b 260 Gene3D G3DSA:2.60.120.10 50 166 7.8E-21 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_16205 50854ef66383c8975b11fab0f54c6b3b 260 Pfam PF00027 Cyclic nucleotide-binding domain 55 137 1.6E-8 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_16205 50854ef66383c8975b11fab0f54c6b3b 260 SUPERFAMILY SSF51206 25 164 1.31E-20 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like AMK58_16205 50854ef66383c8975b11fab0f54c6b3b 260 SUPERFAMILY SSF46785 169 247 8.67E-13 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_16205 50854ef66383c8975b11fab0f54c6b3b 260 Gene3D G3DSA:1.10.10.10 169 256 6.9E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_16205 50854ef66383c8975b11fab0f54c6b3b 260 Pfam PF13545 Crp-like helix-turn-helix domain 170 243 8.0E-13 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMK58_16205 50854ef66383c8975b11fab0f54c6b3b 260 SMART SM00100 32 153 2.4E-7 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_23630 2b0ec89fac164d02efbdc3c67c773f43 361 Pfam PF01339 CheB methylesterase 175 354 1.6E-49 T 11-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AMK58_23630 2b0ec89fac164d02efbdc3c67c773f43 361 SUPERFAMILY SSF52738 171 360 1.05E-53 T 11-10-2018 IPR035909 Methylesterase CheB, C-terminal AMK58_23630 2b0ec89fac164d02efbdc3c67c773f43 361 Gene3D G3DSA:3.40.50.180 169 359 5.4E-56 T 11-10-2018 IPR035909 Methylesterase CheB, C-terminal AMK58_23630 2b0ec89fac164d02efbdc3c67c773f43 361 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 2 360 34.106 T 11-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AMK58_23630 2b0ec89fac164d02efbdc3c67c773f43 361 Gene3D G3DSA:3.40.50.2300 1 131 4.4E-30 T 11-10-2018 AMK58_23630 2b0ec89fac164d02efbdc3c67c773f43 361 SUPERFAMILY SSF52172 1 126 3.42E-30 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_23630 2b0ec89fac164d02efbdc3c67c773f43 361 SMART SM00448 2 114 5.5E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_23630 2b0ec89fac164d02efbdc3c67c773f43 361 Pfam PF00072 Response regulator receiver domain 4 108 1.6E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_23630 2b0ec89fac164d02efbdc3c67c773f43 361 PIRSF PIRSF000876 1 361 1.6E-109 T 11-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AMK58_22410 770be652b578b86a4ca405d7aa2cef22 170 Gene3D G3DSA:2.30.110.10 1 97 1.5E-22 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 AMK58_22410 770be652b578b86a4ca405d7aa2cef22 170 Gene3D G3DSA:1.20.58.290 98 169 3.1E-24 T 11-10-2018 AMK58_22410 770be652b578b86a4ca405d7aa2cef22 170 SUPERFAMILY SSF50475 1 158 1.57E-43 T 11-10-2018 AMK58_22410 770be652b578b86a4ca405d7aa2cef22 170 Pfam PF04289 Protein of unknown function (DUF447) 1 156 9.0E-40 T 11-10-2018 IPR007386 Protein of unknown function DUF447 AMK58_22070 07165ec36eb8e7489012dc0e733db4e2 598 Pfam PF00723 Glycosyl hydrolases family 15 218 534 1.4E-62 T 11-10-2018 IPR011613 GH15-like domain Reactome: R-HSA-70221 AMK58_22070 07165ec36eb8e7489012dc0e733db4e2 598 SUPERFAMILY SSF48208 190 588 1.66E-111 T 11-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 AMK58_22070 07165ec36eb8e7489012dc0e733db4e2 598 Gene3D G3DSA:1.50.10.10 218 595 7.4E-89 T 11-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 AMK58_06195 903b5be722ef41c0da70e7cc909cccb5 134 Gene3D G3DSA:3.10.180.10 1 134 1.1E-40 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMK58_06195 903b5be722ef41c0da70e7cc909cccb5 134 SUPERFAMILY SSF54593 1 133 1.51E-37 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMK58_06195 903b5be722ef41c0da70e7cc909cccb5 134 TIGRFAM TIGR03081 metmalonyl_epim: methylmalonyl-CoA epimerase 4 133 1.1E-48 T 11-10-2018 IPR017515 Methylmalonyl-CoA epimerase KEGG: 00280+5.1.99.1|KEGG: 00630+5.1.99.1|KEGG: 00640+5.1.99.1|KEGG: 00720+5.1.99.1|MetaCyc: PWY-5741|MetaCyc: PWY-5743|MetaCyc: PWY-5789|MetaCyc: PWY-6728|MetaCyc: PWY-7384|MetaCyc: PWY-7854|Reactome: R-HSA-71032 AMK58_06195 903b5be722ef41c0da70e7cc909cccb5 134 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 118 1.9E-23 T 11-10-2018 AMK58_03750 8676f90ec03fa271e328a27478571088 484 Pfam PF01575 MaoC like domain 34 133 3.7E-19 T 11-10-2018 IPR002539 MaoC-like dehydratase domain AMK58_03750 8676f90ec03fa271e328a27478571088 484 Gene3D G3DSA:3.10.129.10 19 174 1.3E-46 T 11-10-2018 AMK58_03750 8676f90ec03fa271e328a27478571088 484 Gene3D G3DSA:3.40.718.10 180 473 9.0E-99 T 11-10-2018 AMK58_03750 8676f90ec03fa271e328a27478571088 484 SUPERFAMILY SSF54637 23 161 5.36E-40 T 11-10-2018 IPR029069 HotDog domain superfamily AMK58_03750 8676f90ec03fa271e328a27478571088 484 Pfam PF01515 Phosphate acetyl/butaryl transferase 256 468 2.6E-47 T 11-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AMK58_03750 8676f90ec03fa271e328a27478571088 484 SUPERFAMILY SSF53659 190 472 5.76E-72 T 11-10-2018 AMK58_24560 bd887055661abce5556c5b528640984a 153 Pfam PF13412 Winged helix-turn-helix DNA-binding 4 51 9.8E-17 T 11-10-2018 AMK58_24560 bd887055661abce5556c5b528640984a 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 4 20 2.6E-15 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMK58_24560 bd887055661abce5556c5b528640984a 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 50 2.6E-15 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMK58_24560 bd887055661abce5556c5b528640984a 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 20 31 2.6E-15 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMK58_24560 bd887055661abce5556c5b528640984a 153 Gene3D G3DSA:3.30.70.920 58 140 4.2E-26 T 11-10-2018 AMK58_24560 bd887055661abce5556c5b528640984a 153 SUPERFAMILY SSF54909 64 153 7.64E-25 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel AMK58_24560 bd887055661abce5556c5b528640984a 153 SMART SM00344 4 113 6.3E-48 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMK58_24560 bd887055661abce5556c5b528640984a 153 SUPERFAMILY SSF46785 3 93 2.56E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_24560 bd887055661abce5556c5b528640984a 153 Pfam PF01037 Lrp/AsnC ligand binding domain 70 144 1.2E-23 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMK58_24560 bd887055661abce5556c5b528640984a 153 Gene3D G3DSA:1.10.10.10 1 57 6.6E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_26125 4a6298dfc77c0645cf51eeeaa5027ef7 343 Gene3D G3DSA:3.40.50.1980 19 152 2.0E-34 T 11-10-2018 AMK58_26125 4a6298dfc77c0645cf51eeeaa5027ef7 343 Gene3D G3DSA:3.40.50.1980 182 284 1.1E-53 T 11-10-2018 AMK58_26125 4a6298dfc77c0645cf51eeeaa5027ef7 343 SUPERFAMILY SSF53807 24 337 2.51E-52 T 11-10-2018 AMK58_26125 4a6298dfc77c0645cf51eeeaa5027ef7 343 Pfam PF01497 Periplasmic binding protein 86 274 6.0E-20 T 11-10-2018 IPR002491 ABC transporter periplasmic binding domain AMK58_26125 4a6298dfc77c0645cf51eeeaa5027ef7 343 Gene3D G3DSA:1.20.58.2180 157 330 1.1E-53 T 11-10-2018 AMK58_09985 109ba322904e454aca0c1ecc24e1053c 493 SUPERFAMILY SSF54862 110 336 4.6E-27 T 11-10-2018 AMK58_09985 109ba322904e454aca0c1ecc24e1053c 493 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 41 491 4.4E-152 T 11-10-2018 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021|GO:0055114 AMK58_09985 109ba322904e454aca0c1ecc24e1053c 493 Pfam PF13746 4Fe-4S dicluster domain 224 332 3.2E-39 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMK58_09985 109ba322904e454aca0c1ecc24e1053c 493 Pfam PF12801 4Fe-4S binding domain 102 142 1.5E-11 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMK58_09985 109ba322904e454aca0c1ecc24e1053c 493 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 368 493 5.2E-30 T 11-10-2018 IPR032879 FixG, C-terminal immunoglobulin-like domain AMK58_09985 109ba322904e454aca0c1ecc24e1053c 493 Gene3D G3DSA:2.60.40.10 368 492 1.4E-19 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_09985 109ba322904e454aca0c1ecc24e1053c 493 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 280 291 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMK58_19460 d0804bc912daa073ad001c0b031b9d2a 369 SUPERFAMILY SSF53383 4 366 2.82E-96 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_19460 d0804bc912daa073ad001c0b031b9d2a 369 Pfam PF00155 Aminotransferase class I and II 10 362 2.0E-57 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMK58_19460 d0804bc912daa073ad001c0b031b9d2a 369 Gene3D G3DSA:3.90.1150.10 1 356 1.2E-130 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_19460 d0804bc912daa073ad001c0b031b9d2a 369 Gene3D G3DSA:3.40.640.10 24 261 1.2E-130 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_19410 8df206864d7e92e2877da79b0c0793f2 232 Pfam PF03922 OmpW family 34 232 9.0E-55 T 11-10-2018 IPR005618 Outer membrane protein, OmpW GO:0019867 AMK58_19410 8df206864d7e92e2877da79b0c0793f2 232 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 104 199 5.0E-4 T 11-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 AMK58_19410 8df206864d7e92e2877da79b0c0793f2 232 SUPERFAMILY SSF56925 33 232 9.16E-32 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel AMK58_19410 8df206864d7e92e2877da79b0c0793f2 232 Gene3D G3DSA:2.40.160.20 32 232 1.7E-62 T 11-10-2018 AMK58_17200 6bda6d5ad9bf5616d8a826343456f40c 250 SUPERFAMILY SSF52540 2 235 2.93E-39 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_17200 6bda6d5ad9bf5616d8a826343456f40c 250 Gene3D G3DSA:3.40.50.300 1 246 2.6E-56 T 11-10-2018 AMK58_17200 6bda6d5ad9bf5616d8a826343456f40c 250 Pfam PF00005 ABC transporter 17 172 7.1E-18 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_17200 6bda6d5ad9bf5616d8a826343456f40c 250 TIGRFAM TIGR01978 sufC: FeS assembly ATPase SufC 3 243 3.6E-109 T 11-10-2018 IPR010230 FeS cluster assembly SUF system, ATPase SufC GO:0005524 AMK58_03860 29c03c22e4676ab1936aca2a2d0defd3 608 Gene3D G3DSA:3.40.50.200 2 259 2.0E-32 T 11-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 AMK58_03860 29c03c22e4676ab1936aca2a2d0defd3 608 SUPERFAMILY SSF52743 11 250 1.17E-32 T 11-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 AMK58_03860 29c03c22e4676ab1936aca2a2d0defd3 608 Gene3D G3DSA:2.60.60.40 275 388 1.1E-10 T 11-10-2018 AMK58_03860 29c03c22e4676ab1936aca2a2d0defd3 608 Gene3D G3DSA:2.60.60.40 412 526 9.3E-9 T 11-10-2018 AMK58_03860 29c03c22e4676ab1936aca2a2d0defd3 608 Pfam PF16841 Ca-dependent carbohydrate-binding module xylan-binding 278 369 7.3E-30 T 11-10-2018 IPR031768 Carbohydrate binding module, xylan-binding domain MetaCyc: PWY-6717|MetaCyc: PWY-6784 AMK58_03860 29c03c22e4676ab1936aca2a2d0defd3 608 Pfam PF16841 Ca-dependent carbohydrate-binding module xylan-binding 415 506 1.2E-29 T 11-10-2018 IPR031768 Carbohydrate binding module, xylan-binding domain MetaCyc: PWY-6717|MetaCyc: PWY-6784 AMK58_17205 cb974a648e0f12b3c61404dd97743d54 495 Pfam PF01458 Uncharacterized protein family (UPF0051) 233 466 1.3E-68 T 11-10-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 AMK58_17205 cb974a648e0f12b3c61404dd97743d54 495 SUPERFAMILY SSF101960 39 492 1.44E-136 T 11-10-2018 IPR037284 SUF system FeS cluster assembly, SufBD superfamily AMK58_17205 cb974a648e0f12b3c61404dd97743d54 495 TIGRFAM TIGR01980 sufB: FeS assembly protein SufB 18 486 6.0E-192 T 11-10-2018 IPR010231 SUF system FeS cluster assembly, SufB GO:0016226 AMK58_01170 6e63ea8c240c894a9ce4e0076b3fc33b 629 Pfam PF00183 Hsp90 protein 217 628 8.4E-117 T 11-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 AMK58_01170 6e63ea8c240c894a9ce4e0076b3fc33b 629 Gene3D G3DSA:3.30.230.80 223 392 4.6E-63 T 11-10-2018 AMK58_01170 6e63ea8c240c894a9ce4e0076b3fc33b 629 Gene3D G3DSA:3.40.50.11260 393 479 4.6E-28 T 11-10-2018 AMK58_01170 6e63ea8c240c894a9ce4e0076b3fc33b 629 Gene3D G3DSA:3.30.565.10 1 222 1.5E-77 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_01170 6e63ea8c240c894a9ce4e0076b3fc33b 629 SUPERFAMILY SSF54211 224 478 1.82E-91 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMK58_01170 6e63ea8c240c894a9ce4e0076b3fc33b 629 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 27 184 3.2E-11 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_01170 6e63ea8c240c894a9ce4e0076b3fc33b 629 PRINTS PR00775 90kDa heat shock protein signature 4 24 6.1E-63 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal AMK58_01170 6e63ea8c240c894a9ce4e0076b3fc33b 629 PRINTS PR00775 90kDa heat shock protein signature 92 109 6.1E-63 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal AMK58_01170 6e63ea8c240c894a9ce4e0076b3fc33b 629 PRINTS PR00775 90kDa heat shock protein signature 124 146 6.1E-63 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal AMK58_01170 6e63ea8c240c894a9ce4e0076b3fc33b 629 PRINTS PR00775 90kDa heat shock protein signature 174 191 6.1E-63 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal AMK58_01170 6e63ea8c240c894a9ce4e0076b3fc33b 629 PRINTS PR00775 90kDa heat shock protein signature 74 91 6.1E-63 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal AMK58_01170 6e63ea8c240c894a9ce4e0076b3fc33b 629 PRINTS PR00775 90kDa heat shock protein signature 25 47 6.1E-63 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal AMK58_01170 6e63ea8c240c894a9ce4e0076b3fc33b 629 PRINTS PR00775 90kDa heat shock protein signature 192 210 6.1E-63 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal AMK58_01170 6e63ea8c240c894a9ce4e0076b3fc33b 629 Hamap MF_00505 Chaperone protein HtpG [htpG]. 1 625 31.251 T 11-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 AMK58_01170 6e63ea8c240c894a9ce4e0076b3fc33b 629 SUPERFAMILY SSF110942 506 625 5.75E-29 T 11-10-2018 IPR037196 HSP90, C-terminal domain AMK58_01170 6e63ea8c240c894a9ce4e0076b3fc33b 629 SMART SM00387 26 186 2.5E-6 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_01170 6e63ea8c240c894a9ce4e0076b3fc33b 629 SUPERFAMILY SSF55874 4 214 1.96E-66 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_01170 6e63ea8c240c894a9ce4e0076b3fc33b 629 PIRSF PIRSF002583 1 629 1.9E-213 T 11-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 AMK58_01170 6e63ea8c240c894a9ce4e0076b3fc33b 629 Gene3D G3DSA:1.20.120.790 487 625 4.9E-38 T 11-10-2018 IPR037196 HSP90, C-terminal domain AMK58_16925 25fc9d5e87523a25b85a230875a31c42 454 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 351 374 - T 11-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 AMK58_16925 25fc9d5e87523a25b85a230875a31c42 454 Gene3D G3DSA:3.50.50.60 7 185 5.0E-48 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_16925 25fc9d5e87523a25b85a230875a31c42 454 Gene3D G3DSA:3.50.50.60 303 454 5.5E-43 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_16925 25fc9d5e87523a25b85a230875a31c42 454 TIGRFAM TIGR00137 gid_trmFO: tRNA:m(5)U-54 methyltransferase 8 447 1.2E-172 T 11-10-2018 IPR004417 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO GO:0005737|GO:0008033|GO:0047151|GO:0050660 AMK58_16925 25fc9d5e87523a25b85a230875a31c42 454 SUPERFAMILY SSF51905 9 376 3.11E-28 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_16925 25fc9d5e87523a25b85a230875a31c42 454 Hamap MF_01037 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO [trmFO]. 9 448 35.392 T 11-10-2018 IPR004417 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO GO:0005737|GO:0008033|GO:0047151|GO:0050660 AMK58_16925 25fc9d5e87523a25b85a230875a31c42 454 Pfam PF01134 Glucose inhibited division protein A 9 380 3.1E-106 T 11-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 AMK58_14905 32e23ce0c41ad0018bc3da75d429d616 253 SUPERFAMILY SSF53790 2 246 6.94E-63 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 AMK58_14905 32e23ce0c41ad0018bc3da75d429d616 253 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 76 109 - T 11-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMK58_14905 32e23ce0c41ad0018bc3da75d429d616 253 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 3 208 3.6E-41 T 11-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 AMK58_14905 32e23ce0c41ad0018bc3da75d429d616 253 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 6 20 - T 11-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMK58_14905 32e23ce0c41ad0018bc3da75d429d616 253 TIGRFAM TIGR01465 cobM_cbiF: precorrin-4 C11-methyltransferase 3 249 8.7E-95 T 11-10-2018 IPR006362 Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase GO:0009236|GO:0046026 AMK58_14905 32e23ce0c41ad0018bc3da75d429d616 253 Gene3D G3DSA:3.30.950.10 111 230 7.4E-44 T 11-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 AMK58_14905 32e23ce0c41ad0018bc3da75d429d616 253 Gene3D G3DSA:3.40.1010.10 1 110 2.3E-28 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 AMK58_05565 c6231f03e3d939e3086281090417fcfe 223 Pfam PF01810 LysE type translocator 22 207 1.7E-19 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMK58_10735 f160e263a99e8e0c51dafb44345b7a33 438 Gene3D G3DSA:1.25.40.10 228 435 8.2E-15 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_10735 f160e263a99e8e0c51dafb44345b7a33 438 Gene3D G3DSA:3.30.2010.10 22 107 1.7E-7 T 11-10-2018 AMK58_10735 f160e263a99e8e0c51dafb44345b7a33 438 Pfam PF01435 Peptidase family M48 32 219 1.5E-29 T 11-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AMK58_10735 f160e263a99e8e0c51dafb44345b7a33 438 SUPERFAMILY SSF48452 260 392 1.59E-14 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_19790 de6912b490ccaa8f158ec575f4a9cd62 647 Pfam PF01433 Peptidase family M1 domain 266 409 4.0E-12 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMK58_19790 de6912b490ccaa8f158ec575f4a9cd62 647 SUPERFAMILY SSF55486 189 419 1.1E-40 T 11-10-2018 AMK58_19790 de6912b490ccaa8f158ec575f4a9cd62 647 Gene3D G3DSA:1.10.390.60 182 414 2.7E-30 T 11-10-2018 AMK58_16000 1dbd2c482946a4990c41d7b80cee2442 513 SUPERFAMILY SSF53067 142 311 2.63E-31 T 11-10-2018 AMK58_16000 1dbd2c482946a4990c41d7b80cee2442 513 SUPERFAMILY SSF109604 349 480 1.6E-15 T 11-10-2018 AMK58_16000 1dbd2c482946a4990c41d7b80cee2442 513 SUPERFAMILY SSF53067 18 140 1.12E-35 T 11-10-2018 AMK58_16000 1dbd2c482946a4990c41d7b80cee2442 513 Gene3D G3DSA:1.10.3210.10 309 503 2.9E-54 T 11-10-2018 AMK58_16000 1dbd2c482946a4990c41d7b80cee2442 513 Gene3D G3DSA:3.30.420.40 5 123 9.3E-36 T 11-10-2018 AMK58_16000 1dbd2c482946a4990c41d7b80cee2442 513 Pfam PF02541 Ppx/GppA phosphatase family 36 310 9.7E-43 T 11-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 AMK58_16000 1dbd2c482946a4990c41d7b80cee2442 513 Gene3D G3DSA:3.30.420.150 124 308 4.1E-49 T 11-10-2018 AMK58_28110 8a0ed35bedd2d8b08ef39594274a8130 267 SUPERFAMILY SSF56349 57 258 2.24E-45 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMK58_28110 8a0ed35bedd2d8b08ef39594274a8130 267 Gene3D G3DSA:1.10.443.10 57 249 8.1E-49 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMK58_28110 8a0ed35bedd2d8b08ef39594274a8130 267 SUPERFAMILY SSF47823 2 54 1.8E-8 T 11-10-2018 AMK58_28110 8a0ed35bedd2d8b08ef39594274a8130 267 Pfam PF00589 Phage integrase family 65 247 1.2E-17 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMK58_28110 8a0ed35bedd2d8b08ef39594274a8130 267 Gene3D G3DSA:1.10.150.130 1 55 5.9E-7 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal AMK58_00290 58a0a77ae3e17b0e792caa4ad64262f7 368 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 174 368 38.416 T 11-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AMK58_00290 58a0a77ae3e17b0e792caa4ad64262f7 368 SUPERFAMILY SSF142695 175 346 1.7E-57 T 11-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AMK58_00290 58a0a77ae3e17b0e792caa4ad64262f7 368 Gene3D G3DSA:3.40.50.10990 174 347 1.3E-65 T 11-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AMK58_00290 58a0a77ae3e17b0e792caa4ad64262f7 368 SUPERFAMILY SSF55821 6 170 1.79E-13 T 11-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily AMK58_00290 58a0a77ae3e17b0e792caa4ad64262f7 368 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 193 367 1.7E-65 T 11-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AMK58_00290 58a0a77ae3e17b0e792caa4ad64262f7 368 Pfam PF00925 GTP cyclohydrolase II 178 344 6.6E-59 T 11-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AMK58_19705 696342e2d415092c28f27084ec86dcaa 521 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 435 453 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_19705 696342e2d415092c28f27084ec86dcaa 521 PRINTS PR00313 NodO calcium binding signature 159 167 7.4E-11 T 11-10-2018 AMK58_19705 696342e2d415092c28f27084ec86dcaa 521 PRINTS PR00313 NodO calcium binding signature 120 131 7.4E-11 T 11-10-2018 AMK58_19705 696342e2d415092c28f27084ec86dcaa 521 PRINTS PR00313 NodO calcium binding signature 141 149 7.4E-11 T 11-10-2018 AMK58_19705 696342e2d415092c28f27084ec86dcaa 521 PRINTS PR00313 NodO calcium binding signature 177 186 7.4E-11 T 11-10-2018 AMK58_19705 696342e2d415092c28f27084ec86dcaa 521 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 128 146 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_19705 696342e2d415092c28f27084ec86dcaa 521 Gene3D G3DSA:2.150.10.10 290 351 8.9E-9 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_19705 696342e2d415092c28f27084ec86dcaa 521 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 318 336 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_19705 696342e2d415092c28f27084ec86dcaa 521 Gene3D G3DSA:2.150.10.10 145 266 1.0E-20 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_19705 696342e2d415092c28f27084ec86dcaa 521 Gene3D G3DSA:2.150.10.10 85 144 2.6E-9 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_19705 696342e2d415092c28f27084ec86dcaa 521 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 309 327 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_19705 696342e2d415092c28f27084ec86dcaa 521 Gene3D G3DSA:2.150.10.10 402 516 1.2E-22 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_19705 696342e2d415092c28f27084ec86dcaa 521 SUPERFAMILY SSF51120 105 266 7.72E-26 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_19705 696342e2d415092c28f27084ec86dcaa 521 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 123 139 0.0026 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_19705 696342e2d415092c28f27084ec86dcaa 521 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 159 172 3.1 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_19705 696342e2d415092c28f27084ec86dcaa 521 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 105 121 0.53 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_19705 696342e2d415092c28f27084ec86dcaa 521 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 403 419 1.1 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_19705 696342e2d415092c28f27084ec86dcaa 521 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 366 383 0.051 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_19705 696342e2d415092c28f27084ec86dcaa 521 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 441 455 0.17 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_19705 696342e2d415092c28f27084ec86dcaa 521 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 141 157 1.2 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_19705 696342e2d415092c28f27084ec86dcaa 521 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 420 437 0.002 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_19705 696342e2d415092c28f27084ec86dcaa 521 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 331 347 0.51 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_19705 696342e2d415092c28f27084ec86dcaa 521 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 384 400 0.11 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_19705 696342e2d415092c28f27084ec86dcaa 521 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 349 365 1.2 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_19705 696342e2d415092c28f27084ec86dcaa 521 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 313 329 0.17 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_19705 696342e2d415092c28f27084ec86dcaa 521 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 110 128 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_19705 696342e2d415092c28f27084ec86dcaa 521 SUPERFAMILY SSF51120 361 511 1.05E-29 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_19705 696342e2d415092c28f27084ec86dcaa 521 Gene3D G3DSA:2.150.10.10 352 401 3.8E-8 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_17285 8284d11f35a1063e7c553c05ac9a080a 377 Pfam PF11814 Peptidase_C39 like family 159 363 6.1E-85 T 11-10-2018 IPR021770 Protein of unknown function DUF3335 AMK58_17285 8284d11f35a1063e7c553c05ac9a080a 377 SUPERFAMILY SSF55729 2 145 2.83E-33 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_17285 8284d11f35a1063e7c553c05ac9a080a 377 Pfam PF00583 Acetyltransferase (GNAT) family 30 122 1.9E-17 T 11-10-2018 IPR000182 GNAT domain AMK58_17285 8284d11f35a1063e7c553c05ac9a080a 377 Gene3D G3DSA:3.40.630.30 1 148 3.3E-36 T 11-10-2018 AMK58_20365 8b59b869df77454e3c70f61d3e359330 361 Pfam PF13614 AAA domain 20 193 8.9E-43 T 11-10-2018 IPR025669 AAA domain AMK58_20365 8b59b869df77454e3c70f61d3e359330 361 Gene3D G3DSA:3.40.50.300 12 267 2.6E-60 T 11-10-2018 AMK58_20365 8b59b869df77454e3c70f61d3e359330 361 SUPERFAMILY SSF52540 18 265 7.2E-52 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_11060 88e3963bdf5561c28098998c527a3e02 257 SUPERFAMILY SSF161098 52 233 3.27E-27 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_11060 88e3963bdf5561c28098998c527a3e02 257 Gene3D G3DSA:1.10.3720.10 47 245 1.1E-23 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_11060 88e3963bdf5561c28098998c527a3e02 257 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 72 244 1.1E-23 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_01430 632283737c5b60b617f4d05359363796 72 Pfam PF04995 Heme exporter protein D (CcmD) 8 47 5.6E-13 T 11-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 AMK58_01430 632283737c5b60b617f4d05359363796 72 TIGRFAM TIGR03141 cytochro_ccmD: heme exporter protein CcmD 5 47 1.5E-13 T 11-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 AMK58_21550 a6701925fa77e9af5deb4f2cdcf70fc7 210 TIGRFAM TIGR01583 formate-DH-gamm: formate dehydrogenase, gamma subunit 8 204 3.7E-63 T 11-10-2018 IPR006471 Formate dehydrogenase, gamma subunit GO:0008863|GO:0009326|GO:0016021|GO:0045333 AMK58_21550 a6701925fa77e9af5deb4f2cdcf70fc7 210 SUPERFAMILY SSF81342 6 207 1.23E-51 T 11-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 AMK58_21550 a6701925fa77e9af5deb4f2cdcf70fc7 210 Pfam PF01292 Prokaryotic cytochrome b561 11 185 2.7E-19 T 11-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 AMK58_21550 a6701925fa77e9af5deb4f2cdcf70fc7 210 Gene3D G3DSA:1.20.950.20 3 210 1.1E-66 T 11-10-2018 AMK58_17680 a8271c76b7d189b606a3328cad720e5e 234 PRINTS PR00111 Alpha/beta hydrolase fold signature 61 74 8.7E-9 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_17680 a8271c76b7d189b606a3328cad720e5e 234 PRINTS PR00111 Alpha/beta hydrolase fold signature 177 191 8.7E-9 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_17680 a8271c76b7d189b606a3328cad720e5e 234 PRINTS PR00111 Alpha/beta hydrolase fold signature 75 88 8.7E-9 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_17680 a8271c76b7d189b606a3328cad720e5e 234 Gene3D G3DSA:3.40.50.1820 2 232 1.2E-46 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_17680 a8271c76b7d189b606a3328cad720e5e 234 SUPERFAMILY SSF53474 4 231 1.44E-48 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_17680 a8271c76b7d189b606a3328cad720e5e 234 Pfam PF12697 Alpha/beta hydrolase family 7 225 6.7E-14 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_14960 95b2f41521078fc318f6efbca86b657a 240 Gene3D G3DSA:3.40.50.300 7 240 5.9E-54 T 11-10-2018 AMK58_14960 95b2f41521078fc318f6efbca86b657a 240 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_14960 95b2f41521078fc318f6efbca86b657a 240 Pfam PF00005 ABC transporter 27 168 4.0E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_14960 95b2f41521078fc318f6efbca86b657a 240 SMART SM00382 36 217 2.9E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_14960 95b2f41521078fc318f6efbca86b657a 240 SUPERFAMILY SSF52540 11 237 2.25E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_19415 67cc6b0f1ad65b97adbcff96eff8990c 144 SMART SM00116 13 61 9.3E-7 T 11-10-2018 IPR000644 CBS domain AMK58_19415 67cc6b0f1ad65b97adbcff96eff8990c 144 SMART SM00116 79 126 1.1E-10 T 11-10-2018 IPR000644 CBS domain AMK58_19415 67cc6b0f1ad65b97adbcff96eff8990c 144 SUPERFAMILY SSF54631 9 141 1.39E-33 T 11-10-2018 AMK58_19415 67cc6b0f1ad65b97adbcff96eff8990c 144 Pfam PF00571 CBS domain 72 126 1.9E-12 T 11-10-2018 IPR000644 CBS domain AMK58_19415 67cc6b0f1ad65b97adbcff96eff8990c 144 Pfam PF00571 CBS domain 12 61 3.5E-10 T 11-10-2018 IPR000644 CBS domain AMK58_19415 67cc6b0f1ad65b97adbcff96eff8990c 144 Gene3D G3DSA:3.10.580.10 1 142 1.0E-46 T 11-10-2018 AMK58_17865 479809c608f7ccf5a0a78a57f7fb219d 193 Gene3D G3DSA:3.40.50.1010 1 159 9.0E-51 T 11-10-2018 AMK58_17865 479809c608f7ccf5a0a78a57f7fb219d 193 Pfam PF01936 NYN domain 2 155 5.3E-36 T 11-10-2018 IPR021139 NYN domain, limkain-b1-type AMK58_26590 7e6ad426b251f092823c5b9046e4a035 294 Pfam PF00781 Diacylglycerol kinase catalytic domain 7 126 6.9E-26 T 11-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 AMK58_26590 7e6ad426b251f092823c5b9046e4a035 294 Gene3D G3DSA:3.40.50.10330 1 125 1.1E-32 T 11-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 AMK58_26590 7e6ad426b251f092823c5b9046e4a035 294 Gene3D G3DSA:2.60.200.40 126 284 7.6E-42 T 11-10-2018 AMK58_26590 7e6ad426b251f092823c5b9046e4a035 294 SUPERFAMILY SSF111331 5 293 1.02E-75 T 11-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily AMK58_26590 7e6ad426b251f092823c5b9046e4a035 294 TIGRFAM TIGR00147 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family 6 292 2.7E-51 T 11-10-2018 IPR005218 Diacylglycerol/lipid kinase AMK58_26590 7e6ad426b251f092823c5b9046e4a035 294 SMART SM00046 7 129 5.7E-11 T 11-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 AMK58_22420 f1156ce897d7d01e0f8653d213711bec 213 Pfam PF00696 Amino acid kinase family 6 65 3.9E-6 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 AMK58_22420 f1156ce897d7d01e0f8653d213711bec 213 SUPERFAMILY SSF53633 6 141 7.93E-11 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMK58_22420 f1156ce897d7d01e0f8653d213711bec 213 Gene3D G3DSA:3.40.1160.10 2 204 4.7E-18 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMK58_19885 7e704efdfcd4c0451c28fe30c2bd09c3 420 Pfam PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding 80 400 4.0E-81 T 11-10-2018 IPR003776 YcaO-like domain AMK58_19885 7e704efdfcd4c0451c28fe30c2bd09c3 420 TIGRFAM TIGR00702 TIGR00702: YcaO-type kinase domain 32 400 2.6E-65 T 11-10-2018 IPR003776 YcaO-like domain AMK58_19885 7e704efdfcd4c0451c28fe30c2bd09c3 420 Gene3D G3DSA:1.10.490.140 345 410 1.6E-6 T 11-10-2018 AMK58_19885 7e704efdfcd4c0451c28fe30c2bd09c3 420 Gene3D G3DSA:1.10.490.140 162 272 6.0E-21 T 11-10-2018 AMK58_08485 7e7a7b9d339b0e39eb7679c41247cfa0 406 Pfam PF00872 Transposase, Mutator family 13 382 5.3E-131 T 11-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 AMK58_08485 7e7a7b9d339b0e39eb7679c41247cfa0 406 ProSitePatterns PS01007 Transposases, Mutator family, signature. 236 260 - T 11-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 AMK58_13390 7e7a7b9d339b0e39eb7679c41247cfa0 406 Pfam PF00872 Transposase, Mutator family 13 382 5.3E-131 T 11-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 AMK58_13390 7e7a7b9d339b0e39eb7679c41247cfa0 406 ProSitePatterns PS01007 Transposases, Mutator family, signature. 236 260 - T 11-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 AMK58_02850 7e7a7b9d339b0e39eb7679c41247cfa0 406 Pfam PF00872 Transposase, Mutator family 13 382 5.3E-131 T 11-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 AMK58_02850 7e7a7b9d339b0e39eb7679c41247cfa0 406 ProSitePatterns PS01007 Transposases, Mutator family, signature. 236 260 - T 11-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 AMK58_04920 e3dad41a4e52ac496c7d9f4112652c9d 109 ProSitePatterns PS00814 Adrenodoxin family, iron-sulfur binding region signature. 39 49 - T 11-10-2018 IPR018298 Adrenodoxin, iron-sulphur binding site GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 AMK58_04920 e3dad41a4e52ac496c7d9f4112652c9d 109 SUPERFAMILY SSF54292 1 101 3.77E-33 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMK58_04920 e3dad41a4e52ac496c7d9f4112652c9d 109 PRINTS PR00355 Adrenodoxin signature 58 72 2.9E-11 T 11-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 AMK58_04920 e3dad41a4e52ac496c7d9f4112652c9d 109 PRINTS PR00355 Adrenodoxin signature 39 49 2.9E-11 T 11-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 AMK58_04920 e3dad41a4e52ac496c7d9f4112652c9d 109 PRINTS PR00355 Adrenodoxin signature 81 89 2.9E-11 T 11-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 AMK58_04920 e3dad41a4e52ac496c7d9f4112652c9d 109 Gene3D G3DSA:3.10.20.30 2 109 4.6E-43 T 11-10-2018 IPR012675 Beta-grasp domain superfamily AMK58_04920 e3dad41a4e52ac496c7d9f4112652c9d 109 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 7 89 8.4E-14 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMK58_19295 474b636b5dbf7f16215fd3a8cf4eb599 389 SUPERFAMILY SSF56762 37 381 3.27E-44 T 11-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_19295 474b636b5dbf7f16215fd3a8cf4eb599 389 Pfam PF00374 Nickel-dependent hydrogenase 234 347 7.3E-10 T 11-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 AMK58_19295 474b636b5dbf7f16215fd3a8cf4eb599 389 Gene3D G3DSA:1.10.645.10 7 167 2.6E-7 T 11-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_19295 474b636b5dbf7f16215fd3a8cf4eb599 389 Gene3D G3DSA:1.10.645.10 210 383 1.9E-29 T 11-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_27805 17b2272cf89dc707b1ae42f8c8d8fcca 75 Gene3D G3DSA:3.40.50.2000 9 75 1.5E-18 T 11-10-2018 AMK58_11375 919cb4251903a92b766babe95e0f7e9c 277 Gene3D G3DSA:3.90.230.10 7 266 5.2E-108 T 11-10-2018 AMK58_11375 919cb4251903a92b766babe95e0f7e9c 277 Hamap MF_01974 Methionine aminopeptidase [map]. 11 257 41.634 T 11-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMK58_11375 919cb4251903a92b766babe95e0f7e9c 277 Pfam PF00557 Metallopeptidase family M24 20 248 2.0E-52 T 11-10-2018 IPR000994 Peptidase M24 AMK58_11375 919cb4251903a92b766babe95e0f7e9c 277 PRINTS PR00599 Methionine aminopeptidase-1 signature 98 114 1.0E-21 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMK58_11375 919cb4251903a92b766babe95e0f7e9c 277 PRINTS PR00599 Methionine aminopeptidase-1 signature 199 211 1.0E-21 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMK58_11375 919cb4251903a92b766babe95e0f7e9c 277 PRINTS PR00599 Methionine aminopeptidase-1 signature 76 89 1.0E-21 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMK58_11375 919cb4251903a92b766babe95e0f7e9c 277 PRINTS PR00599 Methionine aminopeptidase-1 signature 168 180 1.0E-21 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMK58_11375 919cb4251903a92b766babe95e0f7e9c 277 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 174 192 - T 11-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMK58_11375 919cb4251903a92b766babe95e0f7e9c 277 SUPERFAMILY SSF55920 12 260 3.93E-90 T 11-10-2018 IPR036005 Creatinase/aminopeptidase-like AMK58_11375 919cb4251903a92b766babe95e0f7e9c 277 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 11 256 1.1E-92 T 11-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMK58_23040 6c2a993fbd19e1a6f8788b1512658d42 273 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 155 173 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_23040 6c2a993fbd19e1a6f8788b1512658d42 273 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 65 83 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_23040 6c2a993fbd19e1a6f8788b1512658d42 273 PRINTS PR00313 NodO calcium binding signature 141 149 1.8E-11 T 11-10-2018 AMK58_23040 6c2a993fbd19e1a6f8788b1512658d42 273 PRINTS PR00313 NodO calcium binding signature 87 95 1.8E-11 T 11-10-2018 AMK58_23040 6c2a993fbd19e1a6f8788b1512658d42 273 PRINTS PR00313 NodO calcium binding signature 66 77 1.8E-11 T 11-10-2018 AMK58_23040 6c2a993fbd19e1a6f8788b1512658d42 273 PRINTS PR00313 NodO calcium binding signature 168 177 1.8E-11 T 11-10-2018 AMK58_23040 6c2a993fbd19e1a6f8788b1512658d42 273 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 159 175 0.003 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_23040 6c2a993fbd19e1a6f8788b1512658d42 273 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 33 49 0.051 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_23040 6c2a993fbd19e1a6f8788b1512658d42 273 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 14 31 0.0044 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_23040 6c2a993fbd19e1a6f8788b1512658d42 273 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 105 121 0.04 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_23040 6c2a993fbd19e1a6f8788b1512658d42 273 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 176 193 5.5E-5 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_23040 6c2a993fbd19e1a6f8788b1512658d42 273 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 141 157 0.0035 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_23040 6c2a993fbd19e1a6f8788b1512658d42 273 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 69 85 0.028 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_23040 6c2a993fbd19e1a6f8788b1512658d42 273 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 50 67 0.0014 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_23040 6c2a993fbd19e1a6f8788b1512658d42 273 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 123 139 0.15 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_23040 6c2a993fbd19e1a6f8788b1512658d42 273 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 87 103 0.0036 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_23040 6c2a993fbd19e1a6f8788b1512658d42 273 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 74 92 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_23040 6c2a993fbd19e1a6f8788b1512658d42 273 Gene3D G3DSA:2.150.10.10 154 269 1.5E-27 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_23040 6c2a993fbd19e1a6f8788b1512658d42 273 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 164 182 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_23040 6c2a993fbd19e1a6f8788b1512658d42 273 SUPERFAMILY SSF51120 114 255 1.72E-29 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_23040 6c2a993fbd19e1a6f8788b1512658d42 273 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 173 191 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_23040 6c2a993fbd19e1a6f8788b1512658d42 273 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 83 101 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_23040 6c2a993fbd19e1a6f8788b1512658d42 273 Gene3D G3DSA:2.150.10.10 58 110 2.5E-14 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_23040 6c2a993fbd19e1a6f8788b1512658d42 273 Gene3D G3DSA:2.150.10.10 111 153 8.2E-12 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_23040 6c2a993fbd19e1a6f8788b1512658d42 273 SUPERFAMILY SSF51120 2 128 2.01E-26 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_23040 6c2a993fbd19e1a6f8788b1512658d42 273 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 56 74 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_23040 6c2a993fbd19e1a6f8788b1512658d42 273 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 146 164 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_23040 6c2a993fbd19e1a6f8788b1512658d42 273 Gene3D G3DSA:2.150.10.10 1 57 2.1E-12 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_07120 68f90b3c20cee4087b64d9dac561af84 116 Pfam PF01022 Bacterial regulatory protein, arsR family 33 78 1.7E-11 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMK58_07120 68f90b3c20cee4087b64d9dac561af84 116 Gene3D G3DSA:1.10.10.10 5 115 3.4E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_07120 68f90b3c20cee4087b64d9dac561af84 116 SUPERFAMILY SSF46785 14 106 5.79E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_07120 68f90b3c20cee4087b64d9dac561af84 116 SMART SM00418 26 104 1.5E-24 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMK58_07120 68f90b3c20cee4087b64d9dac561af84 116 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 75 90 1.4E-10 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMK58_07120 68f90b3c20cee4087b64d9dac561af84 116 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 60 75 1.4E-10 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMK58_07120 68f90b3c20cee4087b64d9dac561af84 116 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 28 43 1.4E-10 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMK58_14760 fdeeca94a76e4c811afbf67656c7d126 230 PIRSF PIRSF001435 21 229 3.8E-34 T 11-10-2018 AMK58_14760 fdeeca94a76e4c811afbf67656c7d126 230 Gene3D G3DSA:1.10.340.30 43 150 3.9E-50 T 11-10-2018 AMK58_14760 fdeeca94a76e4c811afbf67656c7d126 230 Gene3D G3DSA:1.10.1670.10 151 221 3.9E-50 T 11-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 AMK58_14760 fdeeca94a76e4c811afbf67656c7d126 230 SMART SM00478 56 203 5.3E-41 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AMK58_14760 fdeeca94a76e4c811afbf67656c7d126 230 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 205 221 - T 11-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 AMK58_14760 fdeeca94a76e4c811afbf67656c7d126 230 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 52 186 1.3E-18 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AMK58_14760 fdeeca94a76e4c811afbf67656c7d126 230 SUPERFAMILY SSF48150 37 222 1.04E-54 T 11-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 AMK58_03655 a8eb06267b359865f78e28b4d6846626 101 Gene3D G3DSA:3.30.750.24 1 101 2.2E-20 T 11-10-2018 IPR036513 STAS domain superfamily AMK58_03655 a8eb06267b359865f78e28b4d6846626 101 SUPERFAMILY SSF52091 1 100 9.22E-21 T 11-10-2018 IPR036513 STAS domain superfamily AMK58_03655 a8eb06267b359865f78e28b4d6846626 101 Pfam PF13466 STAS domain 14 90 4.5E-14 T 11-10-2018 IPR002645 STAS domain AMK58_03935 60ad1143e0277b1422568d3c790e6ad4 467 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 12 455 4.1E-112 T 11-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMK58_03935 60ad1143e0277b1422568d3c790e6ad4 467 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 113 136 - T 11-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 AMK58_03935 60ad1143e0277b1422568d3c790e6ad4 467 Gene3D G3DSA:3.90.190.20 322 462 1.8E-40 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMK58_03935 60ad1143e0277b1422568d3c790e6ad4 467 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 7 61 2.2E-4 T 11-10-2018 IPR013116 Ketol-acid reductoisomerase, N-terminal KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AMK58_03935 60ad1143e0277b1422568d3c790e6ad4 467 Gene3D G3DSA:3.40.1190.10 98 316 1.2E-52 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMK58_03935 60ad1143e0277b1422568d3c790e6ad4 467 SUPERFAMILY SSF53244 316 457 2.2E-37 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMK58_03935 60ad1143e0277b1422568d3c790e6ad4 467 Pfam PF02875 Mur ligase family, glutamate ligase domain 318 373 7.3E-6 T 11-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 AMK58_03935 60ad1143e0277b1422568d3c790e6ad4 467 SUPERFAMILY SSF53623 105 314 3.4E-48 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMK58_03935 60ad1143e0277b1422568d3c790e6ad4 467 Gene3D G3DSA:3.40.50.720 7 97 1.4E-15 T 11-10-2018 AMK58_03935 60ad1143e0277b1422568d3c790e6ad4 467 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 10 457 31.529 T 11-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMK58_03935 60ad1143e0277b1422568d3c790e6ad4 467 SUPERFAMILY SSF51984 7 95 2.22E-11 T 11-10-2018 AMK58_03935 60ad1143e0277b1422568d3c790e6ad4 467 Pfam PF08245 Mur ligase middle domain 115 297 1.7E-29 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 AMK58_04355 74ca7e49efea218a9b4552283dd09f2e 232 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 12 185 2.9E-46 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal AMK58_04355 74ca7e49efea218a9b4552283dd09f2e 232 Gene3D G3DSA:3.40.225.10 6 215 3.5E-68 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily AMK58_04355 74ca7e49efea218a9b4552283dd09f2e 232 SUPERFAMILY SSF53639 2 210 1.24E-62 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily AMK58_04355 74ca7e49efea218a9b4552283dd09f2e 232 SMART SM01007 11 185 9.5E-62 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal AMK58_22980 2f5e2243349a7821f53f64d338228d24 168 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 21 158 2.5E-16 T 11-10-2018 IPR009936 Protein of unknown function DUF1468 AMK58_15225 ee68e22eba20d8b9654514b622fcc719 311 Gene3D G3DSA:3.40.190.150 16 300 2.6E-66 T 11-10-2018 AMK58_15225 ee68e22eba20d8b9654514b622fcc719 311 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 36 305 9.5E-35 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 AMK58_15225 ee68e22eba20d8b9654514b622fcc719 311 SUPERFAMILY SSF53850 91 272 2.41E-8 T 11-10-2018 AMK58_15225 ee68e22eba20d8b9654514b622fcc719 311 PIRSF PIRSF017082 1 311 2.6E-71 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 AMK58_15225 ee68e22eba20d8b9654514b622fcc719 311 Gene3D G3DSA:3.40.190.10 110 237 2.6E-66 T 11-10-2018 AMK58_07635 0856e99e27f55d1562dd2151ca6e9544 144 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 44 117 2.1E-35 T 11-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 AMK58_07635 0856e99e27f55d1562dd2151ca6e9544 144 Hamap MF_01021 Phosphoribosyl-AMP cyclohydrolase [hisI]. 18 121 31.72 T 11-10-2018 IPR026660 Phosphoribosyl-AMP cyclohydrolase GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 AMK58_07635 0856e99e27f55d1562dd2151ca6e9544 144 SUPERFAMILY SSF141734 20 129 5.62E-48 T 11-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 AMK58_07635 0856e99e27f55d1562dd2151ca6e9544 144 Gene3D G3DSA:3.10.20.400 14 108 3.5E-39 T 11-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 AMK58_07635 0856e99e27f55d1562dd2151ca6e9544 144 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 67 120 1.0E-17 T 11-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 AMK58_10050 94ab4507049f0815767fd441a1504263 99 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 63 79 5.8E-5 T 11-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 AMK58_10050 94ab4507049f0815767fd441a1504263 99 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 84 97 5.8E-5 T 11-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 AMK58_10050 94ab4507049f0815767fd441a1504263 99 Pfam PF02049 Flagellar hook-basal body complex protein FliE 14 99 3.9E-23 T 11-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 AMK58_10050 94ab4507049f0815767fd441a1504263 99 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 13 98 3.1E-15 T 11-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 AMK58_10050 94ab4507049f0815767fd441a1504263 99 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 3 99 15.216 T 11-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 AMK58_03365 60ebec7295902ea72c003bf9a585faa0 152 Gene3D G3DSA:3.10.50.30 72 151 2.1E-28 T 11-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 AMK58_03365 60ebec7295902ea72c003bf9a585faa0 152 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 78 150 3.7E-28 T 11-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 AMK58_03365 60ebec7295902ea72c003bf9a585faa0 152 Gene3D G3DSA:1.10.287.180 1 70 1.3E-31 T 11-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 AMK58_03365 60ebec7295902ea72c003bf9a585faa0 152 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 12 43 - T 11-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 AMK58_03365 60ebec7295902ea72c003bf9a585faa0 152 Pfam PF03449 Transcription elongation factor, N-terminal 1 69 7.8E-33 T 11-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 AMK58_03365 60ebec7295902ea72c003bf9a585faa0 152 PIRSF PIRSF006092 1 152 1.7E-54 T 11-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 AMK58_03365 60ebec7295902ea72c003bf9a585faa0 152 Hamap MF_00105 Transcription elongation factor GreA [greA]. 1 150 32.219 T 11-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 AMK58_03365 60ebec7295902ea72c003bf9a585faa0 152 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 1 149 9.0E-62 T 11-10-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 AMK58_03365 60ebec7295902ea72c003bf9a585faa0 152 SUPERFAMILY SSF54534 76 150 3.01E-23 T 11-10-2018 AMK58_03365 60ebec7295902ea72c003bf9a585faa0 152 SUPERFAMILY SSF46557 1 73 6.93E-29 T 11-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 AMK58_10425 434dc97899b199b0f198663a816801f9 1397 Gene3D G3DSA:2.40.270.10 825 864 4.2E-7 T 11-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMK58_10425 434dc97899b199b0f198663a816801f9 1397 Pfam PF04560 RNA polymerase Rpb2, domain 7 1319 1393 6.8E-27 T 11-10-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMK58_10425 434dc97899b199b0f198663a816801f9 1397 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 13 1395 12.459 T 11-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMK58_10425 434dc97899b199b0f198663a816801f9 1397 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 9 1392 0.0 T 11-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMK58_10425 434dc97899b199b0f198663a816801f9 1397 Pfam PF04563 RNA polymerase beta subunit 27 530 6.9E-34 T 11-10-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMK58_10425 434dc97899b199b0f198663a816801f9 1397 Pfam PF00562 RNA polymerase Rpb2, domain 6 750 1317 3.9E-169 T 11-10-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMK58_10425 434dc97899b199b0f198663a816801f9 1397 Pfam PF10385 RNA polymerase beta subunit external 1 domain 624 689 3.5E-24 T 11-10-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMK58_10425 434dc97899b199b0f198663a816801f9 1397 Gene3D G3DSA:3.90.1100.10 475 661 2.0E-73 T 11-10-2018 AMK58_10425 434dc97899b199b0f198663a816801f9 1397 Gene3D G3DSA:3.90.1110.10 164 268 3.0E-23 T 11-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMK58_10425 434dc97899b199b0f198663a816801f9 1397 Gene3D G3DSA:2.40.50.100 747 824 1.5E-30 T 11-10-2018 AMK58_10425 434dc97899b199b0f198663a816801f9 1397 Gene3D G3DSA:3.90.1800.10 1305 1358 8.9E-11 T 11-10-2018 AMK58_10425 434dc97899b199b0f198663a816801f9 1397 SUPERFAMILY SSF64484 12 1394 0.0 T 11-10-2018 AMK58_10425 434dc97899b199b0f198663a816801f9 1397 Gene3D G3DSA:3.90.1110.10 355 474 1.1E-32 T 11-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMK58_10425 434dc97899b199b0f198663a816801f9 1397 Gene3D G3DSA:2.40.50.150 865 986 9.0E-46 T 11-10-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMK58_10425 434dc97899b199b0f198663a816801f9 1397 Gene3D G3DSA:2.40.270.10 1063 1295 7.5E-81 T 11-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMK58_10425 434dc97899b199b0f198663a816801f9 1397 Pfam PF04565 RNA polymerase Rpb2, domain 3 546 614 2.9E-32 T 11-10-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMK58_10425 434dc97899b199b0f198663a816801f9 1397 Pfam PF04561 RNA polymerase Rpb2, domain 2 383 487 6.4E-20 T 11-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMK58_10425 434dc97899b199b0f198663a816801f9 1397 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1108 1120 - T 11-10-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMK58_10425 434dc97899b199b0f198663a816801f9 1397 Gene3D G3DSA:3.90.1100.10 682 746 1.8E-20 T 11-10-2018 AMK58_10425 434dc97899b199b0f198663a816801f9 1397 Gene3D G3DSA:3.90.1100.10 18 163 4.4E-57 T 11-10-2018 AMK58_24800 60bb7896f95816152d2d6ab40237ddbd 151 Gene3D G3DSA:1.10.10.10 4 146 1.3E-34 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_24800 60bb7896f95816152d2d6ab40237ddbd 151 SMART SM00347 32 132 1.2E-21 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_24800 60bb7896f95816152d2d6ab40237ddbd 151 SUPERFAMILY SSF46785 2 146 1.72E-34 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_24800 60bb7896f95816152d2d6ab40237ddbd 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 92 108 8.8E-5 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_24800 60bb7896f95816152d2d6ab40237ddbd 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 56 72 8.8E-5 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_24800 60bb7896f95816152d2d6ab40237ddbd 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 73 88 8.8E-5 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_24800 60bb7896f95816152d2d6ab40237ddbd 151 Pfam PF01047 MarR family 39 97 5.4E-16 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_27215 b84cb438f50b4a83f9128fb3316e2e25 394 Pfam PF00805 Pentapeptide repeats (8 copies) 135 168 3.0E-7 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_27215 b84cb438f50b4a83f9128fb3316e2e25 394 Pfam PF00805 Pentapeptide repeats (8 copies) 255 292 0.0017 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_27215 b84cb438f50b4a83f9128fb3316e2e25 394 Pfam PF00805 Pentapeptide repeats (8 copies) 47 85 1.7E-11 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_27215 b84cb438f50b4a83f9128fb3316e2e25 394 Pfam PF00805 Pentapeptide repeats (8 copies) 294 327 6.5E-11 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_27215 b84cb438f50b4a83f9128fb3316e2e25 394 Pfam PF00805 Pentapeptide repeats (8 copies) 341 370 1.5E-6 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_27215 b84cb438f50b4a83f9128fb3316e2e25 394 Pfam PF00805 Pentapeptide repeats (8 copies) 86 121 7.2E-7 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_27215 b84cb438f50b4a83f9128fb3316e2e25 394 Gene3D G3DSA:2.160.20.100 128 237 3.1E-16 T 11-10-2018 AMK58_27215 b84cb438f50b4a83f9128fb3316e2e25 394 Gene3D G3DSA:2.160.20.100 240 336 6.3E-22 T 11-10-2018 AMK58_27215 b84cb438f50b4a83f9128fb3316e2e25 394 Gene3D G3DSA:2.160.20.80 9 122 1.1E-25 T 11-10-2018 AMK58_27215 b84cb438f50b4a83f9128fb3316e2e25 394 SUPERFAMILY SSF141571 31 122 2.88E-24 T 11-10-2018 AMK58_27215 b84cb438f50b4a83f9128fb3316e2e25 394 SUPERFAMILY SSF141571 134 221 7.19E-17 T 11-10-2018 AMK58_27215 b84cb438f50b4a83f9128fb3316e2e25 394 Gene3D G3DSA:2.160.20.100 337 390 2.2E-8 T 11-10-2018 AMK58_27215 b84cb438f50b4a83f9128fb3316e2e25 394 SUPERFAMILY SSF141571 250 386 5.36E-30 T 11-10-2018 AMK58_27235 3f57f7ec25472e30cd43a3710f69b4c3 289 SUPERFAMILY SSF53448 6 277 1.19E-60 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_27235 3f57f7ec25472e30cd43a3710f69b4c3 289 Pfam PF00483 Nucleotidyl transferase 13 266 1.0E-24 T 11-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AMK58_27235 3f57f7ec25472e30cd43a3710f69b4c3 289 Gene3D G3DSA:3.90.550.10 1 289 6.9E-86 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_27235 3f57f7ec25472e30cd43a3710f69b4c3 289 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 5 266 8.0E-105 T 11-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 AMK58_07905 468efcb5824bf847d7760141e4c10085 448 Gene3D G3DSA:1.10.287.950 166 445 3.8E-56 T 11-10-2018 AMK58_07905 468efcb5824bf847d7760141e4c10085 448 SUPERFAMILY SSF46458 11 155 1.22E-36 T 11-10-2018 IPR009050 Globin-like superfamily AMK58_07905 468efcb5824bf847d7760141e4c10085 448 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 252 411 7.2E-32 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_07905 468efcb5824bf847d7760141e4c10085 448 SMART SM00283 188 442 2.5E-47 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_07905 468efcb5824bf847d7760141e4c10085 448 Gene3D G3DSA:1.10.490.10 9 165 5.2E-44 T 11-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 AMK58_07905 468efcb5824bf847d7760141e4c10085 448 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 363 392 3.3E-24 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_07905 468efcb5824bf847d7760141e4c10085 448 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 209 238 3.3E-24 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_07905 468efcb5824bf847d7760141e4c10085 448 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 286 313 3.3E-24 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_07905 468efcb5824bf847d7760141e4c10085 448 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 315 344 3.3E-24 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_07905 468efcb5824bf847d7760141e4c10085 448 Pfam PF11563 Protoglobin 8 160 9.4E-39 T 11-10-2018 AMK58_07905 468efcb5824bf847d7760141e4c10085 448 SUPERFAMILY SSF58104 167 441 1.83E-65 T 11-10-2018 AMK58_26560 4c14736aed25e45226d2226330185d6b 333 SUPERFAMILY SSF53474 65 327 2.87E-14 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_26560 4c14736aed25e45226d2226330185d6b 333 PIRSF PIRSF031982 1 333 1.3E-59 T 11-10-2018 IPR016986 Uncharacterised conserved protein UCP031982, alpha/beta hydrolase, XabL AMK58_20430 80b2b7fbd9d6f3bce61edb5e7ee6669a 160 PIRSF PIRSF032146 1 160 6.4E-70 T 11-10-2018 IPR008321 Uncharacterised conserved protein UCP032146 AMK58_20430 80b2b7fbd9d6f3bce61edb5e7ee6669a 160 Hamap MF_00678 UPF0262 protein . 6 159 40.149 T 11-10-2018 IPR008321 Uncharacterised conserved protein UCP032146 AMK58_20430 80b2b7fbd9d6f3bce61edb5e7ee6669a 160 Pfam PF06793 Uncharacterised protein family (UPF0262) 7 159 1.6E-72 T 11-10-2018 IPR008321 Uncharacterised conserved protein UCP032146 AMK58_05065 925a29a39a947854b8ac9e5c2cc7e84c 358 Gene3D G3DSA:3.40.50.2000 199 351 5.4E-7 T 11-10-2018 AMK58_05065 925a29a39a947854b8ac9e5c2cc7e84c 358 SUPERFAMILY SSF53756 2 350 1.36E-12 T 11-10-2018 AMK58_05065 925a29a39a947854b8ac9e5c2cc7e84c 358 Pfam PF13524 Glycosyl transferases group 1 255 347 9.9E-18 T 11-10-2018 AMK58_23430 bc64a8edf06f3b254f873b08ffdcd2d7 585 SMART SM00388 348 413 5.8E-14 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_23430 bc64a8edf06f3b254f873b08ffdcd2d7 585 Gene3D G3DSA:3.30.565.10 434 585 5.3E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_23430 bc64a8edf06f3b254f873b08ffdcd2d7 585 Gene3D G3DSA:1.10.287.130 350 416 3.5E-12 T 11-10-2018 AMK58_23430 bc64a8edf06f3b254f873b08ffdcd2d7 585 Pfam PF00512 His Kinase A (phospho-acceptor) domain 350 412 2.3E-13 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_23430 bc64a8edf06f3b254f873b08ffdcd2d7 585 PRINTS PR00344 Bacterial sensor protein C-terminal signature 570 583 4.4E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_23430 bc64a8edf06f3b254f873b08ffdcd2d7 585 PRINTS PR00344 Bacterial sensor protein C-terminal signature 541 559 4.4E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_23430 bc64a8edf06f3b254f873b08ffdcd2d7 585 PRINTS PR00344 Bacterial sensor protein C-terminal signature 506 520 4.4E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_23430 bc64a8edf06f3b254f873b08ffdcd2d7 585 PRINTS PR00344 Bacterial sensor protein C-terminal signature 524 534 4.4E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_23430 bc64a8edf06f3b254f873b08ffdcd2d7 585 SMART SM00387 468 585 4.7E-34 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_23430 bc64a8edf06f3b254f873b08ffdcd2d7 585 Pfam PF00672 HAMP domain 293 342 1.8E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_23430 bc64a8edf06f3b254f873b08ffdcd2d7 585 SUPERFAMILY SSF47384 334 412 5.1E-16 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_23430 bc64a8edf06f3b254f873b08ffdcd2d7 585 SUPERFAMILY SSF158472 294 343 4.71E-5 T 11-10-2018 AMK58_23430 bc64a8edf06f3b254f873b08ffdcd2d7 585 SUPERFAMILY SSF55874 403 584 1.05E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_23430 bc64a8edf06f3b254f873b08ffdcd2d7 585 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 469 583 6.2E-21 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_23430 bc64a8edf06f3b254f873b08ffdcd2d7 585 Gene3D G3DSA:1.20.1480.50 253 349 1.7E-12 T 11-10-2018 AMK58_23430 bc64a8edf06f3b254f873b08ffdcd2d7 585 Pfam PF13756 Stimulus-sensing domain 112 225 1.8E-27 T 11-10-2018 IPR025919 Stimulus-sensing domain AMK58_23430 bc64a8edf06f3b254f873b08ffdcd2d7 585 SMART SM00304 292 347 4.8E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_23430 bc64a8edf06f3b254f873b08ffdcd2d7 585 Pfam PF13755 Sensor N-terminal transmembrane domain 37 91 6.0E-12 T 11-10-2018 IPR025908 Sensor N-terminal transmembrane domain AMK58_19435 1da3cdab5bdafe7301a3c9ab65991492 387 Gene3D G3DSA:3.40.47.10 137 384 9.4E-139 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_19435 1da3cdab5bdafe7301a3c9ab65991492 387 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 95 113 - T 11-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 AMK58_19435 1da3cdab5bdafe7301a3c9ab65991492 387 SUPERFAMILY SSF53901 10 260 1.7E-70 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_19435 1da3cdab5bdafe7301a3c9ab65991492 387 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 15 385 3.5E-130 T 11-10-2018 IPR002155 Thiolase GO:0016747 AMK58_19435 1da3cdab5bdafe7301a3c9ab65991492 387 Pfam PF02803 Thiolase, C-terminal domain 265 385 1.0E-47 T 11-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 AMK58_19435 1da3cdab5bdafe7301a3c9ab65991492 387 SUPERFAMILY SSF53901 266 385 1.24E-43 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_19435 1da3cdab5bdafe7301a3c9ab65991492 387 Gene3D G3DSA:3.40.47.10 15 270 9.4E-139 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_19435 1da3cdab5bdafe7301a3c9ab65991492 387 PIRSF PIRSF000429 7 387 4.0E-126 T 11-10-2018 IPR002155 Thiolase GO:0016747 AMK58_19435 1da3cdab5bdafe7301a3c9ab65991492 387 ProSitePatterns PS00737 Thiolases signature 2. 333 349 - T 11-10-2018 IPR020613 Thiolase, conserved site GO:0016747 AMK58_19435 1da3cdab5bdafe7301a3c9ab65991492 387 Pfam PF00108 Thiolase, N-terminal domain 13 256 1.3E-65 T 11-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 AMK58_19425 c2fec67be1491d2d058f07e9b35270ef 596 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 472 591 1.8E-37 T 11-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain AMK58_19425 c2fec67be1491d2d058f07e9b35270ef 596 SUPERFAMILY SSF47203 286 461 7.41E-47 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMK58_19425 c2fec67be1491d2d058f07e9b35270ef 596 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 4 34 2.1E-10 T 11-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria AMK58_19425 c2fec67be1491d2d058f07e9b35270ef 596 Gene3D G3DSA:2.40.110.10 160 280 6.9E-93 T 11-10-2018 AMK58_19425 c2fec67be1491d2d058f07e9b35270ef 596 Gene3D G3DSA:1.10.540.10 47 159 6.9E-93 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMK58_19425 c2fec67be1491d2d058f07e9b35270ef 596 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 282 450 1.2E-21 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMK58_19425 c2fec67be1491d2d058f07e9b35270ef 596 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 79 156 4.5E-10 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMK58_19425 c2fec67be1491d2d058f07e9b35270ef 596 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 162 271 2.7E-18 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMK58_19425 c2fec67be1491d2d058f07e9b35270ef 596 SUPERFAMILY SSF56645 39 279 1.18E-55 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMK58_19425 c2fec67be1491d2d058f07e9b35270ef 596 Gene3D G3DSA:1.20.140.10 281 448 6.9E-93 T 11-10-2018 AMK58_00200 e59a8023ea17a50efb377b8f68d54c3e 326 Pfam PF00990 Diguanylate cyclase, GGDEF domain 160 316 3.8E-49 T 11-10-2018 IPR000160 GGDEF domain AMK58_00200 e59a8023ea17a50efb377b8f68d54c3e 326 Gene3D G3DSA:3.30.70.270 157 323 7.4E-62 T 11-10-2018 AMK58_00200 e59a8023ea17a50efb377b8f68d54c3e 326 SMART SM00267 148 320 1.9E-69 T 11-10-2018 IPR000160 GGDEF domain AMK58_00200 e59a8023ea17a50efb377b8f68d54c3e 326 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 156 319 3.6E-55 T 11-10-2018 IPR000160 GGDEF domain AMK58_00200 e59a8023ea17a50efb377b8f68d54c3e 326 Gene3D G3DSA:3.30.450.20 34 156 3.0E-15 T 11-10-2018 AMK58_00200 e59a8023ea17a50efb377b8f68d54c3e 326 SUPERFAMILY SSF55785 51 157 2.26E-15 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_00200 e59a8023ea17a50efb377b8f68d54c3e 326 Pfam PF13426 PAS domain 47 147 1.4E-10 T 11-10-2018 IPR000014 PAS domain AMK58_00200 e59a8023ea17a50efb377b8f68d54c3e 326 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 41 155 7.3E-15 T 11-10-2018 IPR000014 PAS domain AMK58_00200 e59a8023ea17a50efb377b8f68d54c3e 326 SMART SM00091 36 101 2.4E-5 T 11-10-2018 IPR000014 PAS domain AMK58_00200 e59a8023ea17a50efb377b8f68d54c3e 326 SUPERFAMILY SSF55073 164 320 8.63E-53 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_03030 9c2ed133b4acf2415e528921760a61e7 613 Pfam PF00912 Transglycosylase 63 236 1.3E-53 T 11-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMK58_03030 9c2ed133b4acf2415e528921760a61e7 613 Gene3D G3DSA:1.10.3810.10 54 252 1.2E-60 T 11-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMK58_03030 9c2ed133b4acf2415e528921760a61e7 613 Gene3D G3DSA:3.40.710.10 283 612 8.5E-93 T 11-10-2018 AMK58_03030 9c2ed133b4acf2415e528921760a61e7 613 SUPERFAMILY SSF56601 218 611 6.8E-97 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMK58_03030 9c2ed133b4acf2415e528921760a61e7 613 Pfam PF00905 Penicillin binding protein transpeptidase domain 333 605 1.7E-29 T 11-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AMK58_03030 9c2ed133b4acf2415e528921760a61e7 613 SUPERFAMILY SSF53955 52 257 3.94E-61 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily AMK58_18250 fb9f42b45f4e5c14eebf84e8ee4edadb 194 Pfam PF04972 BON domain 128 193 1.1E-11 T 11-10-2018 IPR007055 BON domain AMK58_18250 fb9f42b45f4e5c14eebf84e8ee4edadb 194 Pfam PF04972 BON domain 51 117 1.6E-13 T 11-10-2018 IPR007055 BON domain AMK58_17580 b109986ba8b87645f58ae66890a4009f 458 Gene3D G3DSA:3.30.70.1450 141 232 2.6E-17 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 AMK58_17580 b109986ba8b87645f58ae66890a4009f 458 SUPERFAMILY SSF116726 365 451 1.14E-14 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 AMK58_17580 b109986ba8b87645f58ae66890a4009f 458 Gene3D G3DSA:3.30.70.1450 371 458 2.5E-24 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 AMK58_17580 b109986ba8b87645f58ae66890a4009f 458 Gene3D G3DSA:3.40.50.720 2 140 1.4E-44 T 11-10-2018 AMK58_17580 b109986ba8b87645f58ae66890a4009f 458 SUPERFAMILY SSF51735 2 153 1.31E-35 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_17580 b109986ba8b87645f58ae66890a4009f 458 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 3.0E-22 T 11-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 AMK58_17580 b109986ba8b87645f58ae66890a4009f 458 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 3.0E-22 T 11-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 AMK58_17580 b109986ba8b87645f58ae66890a4009f 458 PRINTS PR00335 TrkA potassium uptake protein signature 49 59 3.0E-22 T 11-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 AMK58_17580 b109986ba8b87645f58ae66890a4009f 458 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 3.0E-22 T 11-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 AMK58_17580 b109986ba8b87645f58ae66890a4009f 458 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 3.0E-22 T 11-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 AMK58_17580 b109986ba8b87645f58ae66890a4009f 458 SUPERFAMILY SSF51735 234 380 1.97E-31 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_17580 b109986ba8b87645f58ae66890a4009f 458 Gene3D G3DSA:3.40.50.720 234 370 7.9E-35 T 11-10-2018 AMK58_17580 b109986ba8b87645f58ae66890a4009f 458 Pfam PF02254 TrkA-N domain 236 354 6.1E-23 T 11-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 AMK58_17580 b109986ba8b87645f58ae66890a4009f 458 Pfam PF02254 TrkA-N domain 3 126 1.4E-27 T 11-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 AMK58_17580 b109986ba8b87645f58ae66890a4009f 458 Pfam PF02080 TrkA-C domain 162 227 6.0E-9 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AMK58_17580 b109986ba8b87645f58ae66890a4009f 458 Pfam PF02080 TrkA-C domain 385 451 5.0E-15 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AMK58_17580 b109986ba8b87645f58ae66890a4009f 458 SUPERFAMILY SSF116726 136 227 2.35E-13 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 AMK58_26820 cf4a3da3169eab16678b1a34264afeb9 153 ProDom PD037294 PEPTIDE ACMNPV ORF38 ORF ORF_59 ORF61 ORF7 PXORF52 ORF-30 ORF79 41 73 2.0E-4 T 11-10-2018 AMK58_26820 cf4a3da3169eab16678b1a34264afeb9 153 SUPERFAMILY SSF55811 8 146 1.06E-32 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMK58_26820 cf4a3da3169eab16678b1a34264afeb9 153 Pfam PF00293 NUDIX domain 20 139 3.7E-16 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMK58_26820 cf4a3da3169eab16678b1a34264afeb9 153 Gene3D G3DSA:3.90.79.10 7 150 9.5E-32 T 11-10-2018 AMK58_26820 cf4a3da3169eab16678b1a34264afeb9 153 PRINTS PR00502 NUDIX hydrolase family signature 46 60 2.3E-5 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AMK58_26820 cf4a3da3169eab16678b1a34264afeb9 153 PRINTS PR00502 NUDIX hydrolase family signature 60 75 2.3E-5 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AMK58_26820 cf4a3da3169eab16678b1a34264afeb9 153 ProSitePatterns PS00893 Nudix box signature. 51 72 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMK58_06845 babac65ed2a5a738834f3d932b2b5918 279 Pfam PF00248 Aldo/keto reductase family 17 265 6.3E-52 T 11-10-2018 IPR023210 NADP-dependent oxidoreductase domain AMK58_06845 babac65ed2a5a738834f3d932b2b5918 279 Gene3D G3DSA:3.20.20.100 1 279 1.5E-96 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMK58_06845 babac65ed2a5a738834f3d932b2b5918 279 PRINTS PR00069 Aldo-keto reductase signature 97 115 5.7E-14 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMK58_06845 babac65ed2a5a738834f3d932b2b5918 279 PRINTS PR00069 Aldo-keto reductase signature 201 225 5.7E-14 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMK58_06845 babac65ed2a5a738834f3d932b2b5918 279 PRINTS PR00069 Aldo-keto reductase signature 127 144 5.7E-14 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMK58_06845 babac65ed2a5a738834f3d932b2b5918 279 SUPERFAMILY SSF51430 4 275 1.15E-79 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMK58_13120 537adb38c0de5ab8d08632b4cfb94717 723 SUPERFAMILY SSF53955 116 322 1.46E-73 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily AMK58_13120 537adb38c0de5ab8d08632b4cfb94717 723 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 141 652 2.6E-185 T 11-10-2018 AMK58_13120 537adb38c0de5ab8d08632b4cfb94717 723 Gene3D G3DSA:3.40.710.10 322 672 1.7E-110 T 11-10-2018 AMK58_13120 537adb38c0de5ab8d08632b4cfb94717 723 Pfam PF00905 Penicillin binding protein transpeptidase domain 387 616 1.7E-29 T 11-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AMK58_13120 537adb38c0de5ab8d08632b4cfb94717 723 Pfam PF00912 Transglycosylase 134 300 1.9E-63 T 11-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMK58_13120 537adb38c0de5ab8d08632b4cfb94717 723 SUPERFAMILY SSF56601 282 665 1.64E-119 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMK58_13120 537adb38c0de5ab8d08632b4cfb94717 723 Gene3D G3DSA:1.10.3810.10 120 317 3.2E-73 T 11-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMK58_27005 117c1e4ca0ca3d70191d8b17b6654a42 323 PIRSF PIRSF000535 8 323 1.2E-79 T 11-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 AMK58_27005 117c1e4ca0ca3d70191d8b17b6654a42 323 Gene3D G3DSA:3.40.1190.20 8 323 2.5E-94 T 11-10-2018 IPR029056 Ribokinase-like AMK58_27005 117c1e4ca0ca3d70191d8b17b6654a42 323 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 11 321 6.9E-95 T 11-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 AMK58_27005 117c1e4ca0ca3d70191d8b17b6654a42 323 Pfam PF00294 pfkB family carbohydrate kinase 19 308 3.9E-51 T 11-10-2018 IPR011611 Carbohydrate kinase PfkB AMK58_27005 117c1e4ca0ca3d70191d8b17b6654a42 323 TIGRFAM TIGR03828 pfkB: 1-phosphofructokinase 11 321 4.3E-93 T 11-10-2018 IPR022463 Fructose 1-phosphate kinase GO:0008662 KEGG: 00051+2.7.1.56 AMK58_27005 117c1e4ca0ca3d70191d8b17b6654a42 323 SUPERFAMILY SSF53613 12 310 1.71E-62 T 11-10-2018 IPR029056 Ribokinase-like AMK58_27005 117c1e4ca0ca3d70191d8b17b6654a42 323 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 261 274 - T 11-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AMK58_09235 1a35838d6086dafe8a25edb74045ce2a 654 SUPERFAMILY SSF53335 105 340 8.97E-5 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_09235 1a35838d6086dafe8a25edb74045ce2a 654 Gene3D G3DSA:3.40.50.720 146 278 9.7E-20 T 11-10-2018 AMK58_09235 1a35838d6086dafe8a25edb74045ce2a 654 Pfam PF02719 Polysaccharide biosynthesis protein 297 591 8.6E-111 T 11-10-2018 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain AMK58_09235 1a35838d6086dafe8a25edb74045ce2a 654 Gene3D G3DSA:3.40.50.720 293 623 6.0E-109 T 11-10-2018 AMK58_09235 1a35838d6086dafe8a25edb74045ce2a 654 Pfam PF13727 CoA-binding domain 61 207 1.3E-10 T 11-10-2018 AMK58_09235 1a35838d6086dafe8a25edb74045ce2a 654 SUPERFAMILY SSF51735 294 569 1.58E-55 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_12955 8d9571ea5fe47d0e25fa72cf9501ffd4 254 PRINTS PR00050 Cold shock protein signature 227 245 2.5E-13 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_12955 8d9571ea5fe47d0e25fa72cf9501ffd4 254 PRINTS PR00050 Cold shock protein signature 212 221 2.5E-13 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_12955 8d9571ea5fe47d0e25fa72cf9501ffd4 254 PRINTS PR00050 Cold shock protein signature 191 206 2.5E-13 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_12955 8d9571ea5fe47d0e25fa72cf9501ffd4 254 Gene3D G3DSA:2.40.50.140 187 252 1.4E-23 T 11-10-2018 AMK58_12955 8d9571ea5fe47d0e25fa72cf9501ffd4 254 Gene3D G3DSA:2.40.50.140 19 84 5.8E-11 T 11-10-2018 AMK58_12955 8d9571ea5fe47d0e25fa72cf9501ffd4 254 ProSitePatterns PS00352 'Cold-shock' domain signature. 202 221 - T 11-10-2018 IPR019844 Cold-shock conserved site AMK58_12955 8d9571ea5fe47d0e25fa72cf9501ffd4 254 SUPERFAMILY SSF50249 188 251 4.93E-20 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_12955 8d9571ea5fe47d0e25fa72cf9501ffd4 254 Pfam PF00313 'Cold-shock' DNA-binding domain 190 252 8.2E-23 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_12955 8d9571ea5fe47d0e25fa72cf9501ffd4 254 Pfam PF00313 'Cold-shock' DNA-binding domain 22 80 2.9E-7 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_12955 8d9571ea5fe47d0e25fa72cf9501ffd4 254 SMART SM00357 190 254 1.7E-21 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 AMK58_12955 8d9571ea5fe47d0e25fa72cf9501ffd4 254 SMART SM00357 22 86 1.3E-6 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 AMK58_12955 8d9571ea5fe47d0e25fa72cf9501ffd4 254 SUPERFAMILY SSF50249 19 83 1.76E-10 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_09295 50c8f89cfa50cac6eb66558b63317cf7 273 Pfam PF13277 YmdB-like protein 4 259 3.9E-98 T 11-10-2018 IPR005235 Metallophosphoesterase, YmdB-like AMK58_09295 50c8f89cfa50cac6eb66558b63317cf7 273 Gene3D G3DSA:3.60.21.10 1 268 3.7E-100 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like AMK58_09295 50c8f89cfa50cac6eb66558b63317cf7 273 SUPERFAMILY SSF56300 1 260 1.0E-82 T 11-10-2018 AMK58_09295 50c8f89cfa50cac6eb66558b63317cf7 273 SMART SM00854 2 200 0.0045 T 11-10-2018 IPR019079 Capsule synthesis protein, CapA AMK58_09295 50c8f89cfa50cac6eb66558b63317cf7 273 PIRSF PIRSF004789 1 267 4.8E-84 T 11-10-2018 IPR005235 Metallophosphoesterase, YmdB-like AMK58_16580 d69570eefa0151ce7a282913744fc12c 326 Pfam PF13180 PDZ domain 232 306 7.8E-9 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMK58_16580 d69570eefa0151ce7a282913744fc12c 326 SUPERFAMILY SSF50156 202 307 4.07E-12 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 AMK58_16580 d69570eefa0151ce7a282913744fc12c 326 SUPERFAMILY SSF50494 21 226 3.69E-28 T 11-10-2018 IPR009003 Peptidase S1, PA clan AMK58_16580 d69570eefa0151ce7a282913744fc12c 326 Gene3D G3DSA:2.30.42.10 230 322 3.1E-11 T 11-10-2018 AMK58_16580 d69570eefa0151ce7a282913744fc12c 326 Gene3D G3DSA:2.40.10.120 14 226 2.8E-21 T 11-10-2018 AMK58_16580 d69570eefa0151ce7a282913744fc12c 326 PRINTS PR00834 HtrA/DegQ protease family signature 63 75 2.1E-6 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMK58_16580 d69570eefa0151ce7a282913744fc12c 326 PRINTS PR00834 HtrA/DegQ protease family signature 261 273 2.1E-6 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMK58_16580 d69570eefa0151ce7a282913744fc12c 326 PRINTS PR00834 HtrA/DegQ protease family signature 84 104 2.1E-6 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMK58_16580 d69570eefa0151ce7a282913744fc12c 326 PRINTS PR00834 HtrA/DegQ protease family signature 180 197 2.1E-6 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMK58_16580 d69570eefa0151ce7a282913744fc12c 326 Pfam PF13365 Trypsin-like peptidase domain 54 187 1.2E-12 T 11-10-2018 AMK58_01525 17e0f8eb873f203eccaa773532d1e529 268 Pfam PF00005 ABC transporter 30 189 9.6E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_01525 17e0f8eb873f203eccaa773532d1e529 268 ProSitePatterns PS00211 ABC transporters family signature. 161 175 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_01525 17e0f8eb873f203eccaa773532d1e529 268 Gene3D G3DSA:3.40.50.300 12 266 8.7E-75 T 11-10-2018 AMK58_01525 17e0f8eb873f203eccaa773532d1e529 268 SUPERFAMILY SSF52540 16 259 8.57E-74 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_01525 17e0f8eb873f203eccaa773532d1e529 268 SMART SM00382 39 237 5.0E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_01525 17e0f8eb873f203eccaa773532d1e529 268 PIRSF PIRSF039085 11 265 4.8E-118 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AMK58_26770 9e592c8cfc6827b3643a5f6f298263bb 642 Gene3D G3DSA:3.40.50.2000 343 482 9.5E-8 T 11-10-2018 AMK58_26770 9e592c8cfc6827b3643a5f6f298263bb 642 Gene3D G3DSA:3.40.50.2000 533 625 5.3E-8 T 11-10-2018 AMK58_26770 9e592c8cfc6827b3643a5f6f298263bb 642 SUPERFAMILY SSF53756 346 615 4.55E-23 T 11-10-2018 AMK58_26770 9e592c8cfc6827b3643a5f6f298263bb 642 SUPERFAMILY SSF53448 63 189 2.39E-5 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_05160 194b752b881a5c6f70a379b434ede03b 230 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 95 115 - T 11-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMK58_05160 194b752b881a5c6f70a379b434ede03b 230 Gene3D G3DSA:3.40.1050.10 3 228 4.1E-70 T 11-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 AMK58_05160 194b752b881a5c6f70a379b434ede03b 230 SMART SM00947 38 220 1.3E-67 T 11-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMK58_05160 194b752b881a5c6f70a379b434ede03b 230 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 50 57 - T 11-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMK58_05160 194b752b881a5c6f70a379b434ede03b 230 Pfam PF00484 Carbonic anhydrase 45 215 2.7E-49 T 11-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMK58_05160 194b752b881a5c6f70a379b434ede03b 230 SUPERFAMILY SSF53056 10 229 1.7E-56 T 11-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 AMK58_28615 18410eb98f7827dfe2b5dffe679304fd 404 TIGRFAM TIGR01821 5aminolev_synth: 5-aminolevulinic acid synthase 1 402 1.6E-203 T 11-10-2018 IPR010961 Tetrapyrrole biosynthesis, 5-aminolevulinic acid synthase GO:0003870|GO:0030170|GO:0033014 KEGG: 00260+2.3.1.37|KEGG: 00860+2.3.1.37|MetaCyc: PWY-5189|MetaCyc: PWY-7536|Reactome: R-HSA-189451 AMK58_28615 18410eb98f7827dfe2b5dffe679304fd 404 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 245 254 - T 11-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 AMK58_28615 18410eb98f7827dfe2b5dffe679304fd 404 Pfam PF00155 Aminotransferase class I and II 47 391 1.8E-80 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMK58_28615 18410eb98f7827dfe2b5dffe679304fd 404 SUPERFAMILY SSF53383 3 399 3.5E-113 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_28615 18410eb98f7827dfe2b5dffe679304fd 404 Gene3D G3DSA:3.40.640.10 63 298 4.3E-169 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_28615 18410eb98f7827dfe2b5dffe679304fd 404 Gene3D G3DSA:3.90.1150.10 14 388 4.3E-169 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_10290 94949cceba09430d7609cf465c532307 161 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 151 4.1E-34 T 11-10-2018 IPR021131 Ribosomal protein L18e/L15P AMK58_10290 94949cceba09430d7609cf465c532307 161 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 3 150 6.3E-44 T 11-10-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_10290 94949cceba09430d7609cf465c532307 161 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 4 153 20.224 T 11-10-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 AMK58_10290 94949cceba09430d7609cf465c532307 161 Gene3D G3DSA:3.100.10.10 66 154 3.9E-16 T 11-10-2018 AMK58_10290 94949cceba09430d7609cf465c532307 161 SUPERFAMILY SSF52080 5 151 2.49E-41 T 11-10-2018 IPR036227 Ribosomal L18e/L15P superfamily AMK58_06220 8940a3f140b020c4a4993ffe60328463 437 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 328 2.8E-35 T 11-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMK58_06220 8940a3f140b020c4a4993ffe60328463 437 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 223 1.8E-102 T 11-10-2018 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 AMK58_06220 8940a3f140b020c4a4993ffe60328463 437 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 5.6E-15 T 11-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 AMK58_06220 8940a3f140b020c4a4993ffe60328463 437 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 5.6E-15 T 11-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 AMK58_06220 8940a3f140b020c4a4993ffe60328463 437 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 5.6E-15 T 11-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 AMK58_06220 8940a3f140b020c4a4993ffe60328463 437 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 5.6E-15 T 11-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 AMK58_06220 8940a3f140b020c4a4993ffe60328463 437 Gene3D G3DSA:3.30.930.10 1 330 3.9E-113 T 11-10-2018 AMK58_06220 8940a3f140b020c4a4993ffe60328463 437 SUPERFAMILY SSF52954 333 436 1.8E-31 T 11-10-2018 AMK58_06220 8940a3f140b020c4a4993ffe60328463 437 Gene3D G3DSA:3.40.50.800 331 437 2.0E-31 T 11-10-2018 IPR036621 Anticodon-binding domain superfamily AMK58_06220 8940a3f140b020c4a4993ffe60328463 437 Hamap MF_01570 Proline--tRNA ligase [proS]. 1 437 63.132 T 11-10-2018 IPR023716 Proline-tRNA ligase, class IIa, type 2 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 AMK58_06220 8940a3f140b020c4a4993ffe60328463 437 SUPERFAMILY SSF55681 9 347 1.41E-93 T 11-10-2018 AMK58_06220 8940a3f140b020c4a4993ffe60328463 437 Pfam PF03129 Anticodon binding domain 348 436 1.5E-20 T 11-10-2018 IPR004154 Anticodon-binding AMK58_07740 e086fb7ffb68a13c0d7979abd6000832 463 SUPERFAMILY SSF56954 9 431 2.09E-77 T 11-10-2018 AMK58_07740 e086fb7ffb68a13c0d7979abd6000832 463 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 31 444 2.8E-97 T 11-10-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 AMK58_07740 e086fb7ffb68a13c0d7979abd6000832 463 Gene3D G3DSA:1.20.1600.10 32 444 2.1E-91 T 11-10-2018 AMK58_07740 e086fb7ffb68a13c0d7979abd6000832 463 Pfam PF02321 Outer membrane efflux protein 34 222 2.4E-27 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 AMK58_07740 e086fb7ffb68a13c0d7979abd6000832 463 Pfam PF02321 Outer membrane efflux protein 241 415 9.0E-27 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 AMK58_12430 549f1c6dbea95a639ac8ba17209058bb 220 Gene3D G3DSA:3.40.50.300 22 218 3.0E-59 T 11-10-2018 AMK58_12430 549f1c6dbea95a639ac8ba17209058bb 220 SUPERFAMILY SSF52540 28 216 2.94E-40 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_12430 549f1c6dbea95a639ac8ba17209058bb 220 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 47 209 6.3E-15 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMK58_12430 549f1c6dbea95a639ac8ba17209058bb 220 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 33 217 27.991 T 11-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 AMK58_12430 549f1c6dbea95a639ac8ba17209058bb 220 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 29 213 3.4E-67 T 11-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 AMK58_12430 549f1c6dbea95a639ac8ba17209058bb 220 Pfam PF01926 50S ribosome-binding GTPase 47 165 8.7E-24 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMK58_20550 4c58e80c5632a253910d16a119e06ea1 445 Pfam PF04932 O-Antigen ligase 194 333 4.7E-11 T 11-10-2018 IPR007016 O-antigen ligase-related AMK58_04565 cc0864dc9367d8b2efe05e38426f7495 107 Hamap MF_00529 Nitrogenase-stabilizing/protective protein NifW [nifW]. 1 105 23.861 T 11-10-2018 IPR004893 Nitrogen fixation protein NifW GO:0009399 AMK58_04565 cc0864dc9367d8b2efe05e38426f7495 107 PIRSF PIRSF005790 1 107 1.3E-41 T 11-10-2018 IPR004893 Nitrogen fixation protein NifW GO:0009399 AMK58_04565 cc0864dc9367d8b2efe05e38426f7495 107 Pfam PF03206 Nitrogen fixation protein NifW 4 104 3.5E-35 T 11-10-2018 IPR004893 Nitrogen fixation protein NifW GO:0009399 AMK58_11825 9b21ef7fa56869ead12d8ec3b2d56862 489 SUPERFAMILY SSF47384 234 307 2.35E-5 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_11825 9b21ef7fa56869ead12d8ec3b2d56862 489 SMART SM00387 363 469 3.1E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_11825 9b21ef7fa56869ead12d8ec3b2d56862 489 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 364 467 3.1E-14 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_11825 9b21ef7fa56869ead12d8ec3b2d56862 489 Gene3D G3DSA:3.30.565.10 329 468 6.3E-27 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_11825 9b21ef7fa56869ead12d8ec3b2d56862 489 Gene3D G3DSA:1.10.287.130 184 307 1.9E-8 T 11-10-2018 AMK58_11825 9b21ef7fa56869ead12d8ec3b2d56862 489 PRINTS PR00344 Bacterial sensor protein C-terminal signature 417 427 5.4E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_11825 9b21ef7fa56869ead12d8ec3b2d56862 489 PRINTS PR00344 Bacterial sensor protein C-terminal signature 453 466 5.4E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_11825 9b21ef7fa56869ead12d8ec3b2d56862 489 PRINTS PR00344 Bacterial sensor protein C-terminal signature 429 447 5.4E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_11825 9b21ef7fa56869ead12d8ec3b2d56862 489 PRINTS PR00344 Bacterial sensor protein C-terminal signature 399 413 5.4E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_11825 9b21ef7fa56869ead12d8ec3b2d56862 489 SUPERFAMILY SSF55874 346 468 1.83E-26 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_03230 34b5e4d66e6bf517def1f9db17e52423 249 Pfam PF00005 ABC transporter 29 184 1.4E-20 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_03230 34b5e4d66e6bf517def1f9db17e52423 249 SUPERFAMILY SSF52540 29 233 1.98E-37 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_03230 34b5e4d66e6bf517def1f9db17e52423 249 Gene3D G3DSA:3.40.50.300 26 248 6.2E-41 T 11-10-2018 AMK58_03230 34b5e4d66e6bf517def1f9db17e52423 249 SMART SM00382 33 233 8.9E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_12210 fff7b188d259ef59d66a626cd618bbfe 309 Pfam PF00892 EamA-like transporter family 29 154 3.4E-18 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_12210 fff7b188d259ef59d66a626cd618bbfe 309 Pfam PF00892 EamA-like transporter family 170 305 2.6E-15 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_12210 fff7b188d259ef59d66a626cd618bbfe 309 SUPERFAMILY SSF103481 207 307 1.96E-8 T 11-10-2018 AMK58_12210 fff7b188d259ef59d66a626cd618bbfe 309 SUPERFAMILY SSF103481 57 155 7.85E-14 T 11-10-2018 AMK58_02875 6d8387dfb908379c4ee43aa0352a67a1 210 Gene3D G3DSA:3.30.420.10 7 201 1.2E-37 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMK58_02875 6d8387dfb908379c4ee43aa0352a67a1 210 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 38 201 8.2E-29 T 11-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMK58_02875 6d8387dfb908379c4ee43aa0352a67a1 210 SUPERFAMILY SSF53098 10 197 6.17E-33 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMK58_02875 6d8387dfb908379c4ee43aa0352a67a1 210 Pfam PF00929 Exonuclease 13 194 1.1E-21 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AMK58_02875 6d8387dfb908379c4ee43aa0352a67a1 210 SMART SM00479 11 203 6.9E-25 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AMK58_23030 e8a9967b8d91c5cca54d9373f5ce2fd2 275 Gene3D G3DSA:3.40.50.150 39 253 1.8E-27 T 11-10-2018 AMK58_23030 e8a9967b8d91c5cca54d9373f5ce2fd2 275 SUPERFAMILY SSF53335 45 246 9.6E-26 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_23030 e8a9967b8d91c5cca54d9373f5ce2fd2 275 Pfam PF08241 Methyltransferase domain 73 186 9.8E-18 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 AMK58_05990 9d783e5d769db9704f52c4c559bd2791 464 Pfam PF00155 Aminotransferase class I and II 131 433 4.4E-21 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMK58_05990 9d783e5d769db9704f52c4c559bd2791 464 SMART SM00345 19 78 4.4E-16 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_05990 9d783e5d769db9704f52c4c559bd2791 464 SUPERFAMILY SSF53383 94 454 1.21E-72 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_05990 9d783e5d769db9704f52c4c559bd2791 464 Gene3D G3DSA:3.40.640.10 135 350 2.7E-66 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_05990 9d783e5d769db9704f52c4c559bd2791 464 Gene3D G3DSA:1.10.10.10 9 79 1.4E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_05990 9d783e5d769db9704f52c4c559bd2791 464 SUPERFAMILY SSF46785 12 88 5.84E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_05990 9d783e5d769db9704f52c4c559bd2791 464 Gene3D G3DSA:3.90.1150.10 129 451 2.7E-66 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_05990 9d783e5d769db9704f52c4c559bd2791 464 Pfam PF00392 Bacterial regulatory proteins, gntR family 16 78 6.7E-15 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_11995 d969e045142b0d5cbbf3c9cd2644bb5c 187 Pfam PF04955 HupE / UreJ protein 16 180 9.8E-19 T 11-10-2018 IPR007038 Hydrogenase/Urease accessory protein HupE/UreJ protein AMK58_25030 3757168adc094340866c5faeb2acaee6 332 Gene3D G3DSA:1.10.1530.10 9 325 1.7E-112 T 11-10-2018 AMK58_25030 3757168adc094340866c5faeb2acaee6 332 Gene3D G3DSA:3.30.60.50 175 223 1.7E-112 T 11-10-2018 AMK58_25030 3757168adc094340866c5faeb2acaee6 332 Gene3D G3DSA:3.30.1370.60 59 298 1.7E-112 T 11-10-2018 AMK58_25030 3757168adc094340866c5faeb2acaee6 332 Pfam PF02615 Malate/L-lactate dehydrogenase 2 325 4.9E-104 T 11-10-2018 IPR003767 Malate/L-lactate dehydrogenase-like GO:0016491|GO:0055114 AMK58_25030 3757168adc094340866c5faeb2acaee6 332 SUPERFAMILY SSF89733 3 329 3.66E-100 T 11-10-2018 IPR036111 Malate/L-sulfolactate/L-lactate dehydrogenase-like superfamily GO:0016491|GO:0055114 AMK58_25255 8741c4ce41df6a8ff61b0cb458a6046e 340 SUPERFAMILY SSF48029 122 329 6.67E-56 T 11-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical AMK58_25255 8741c4ce41df6a8ff61b0cb458a6046e 340 Gene3D G3DSA:1.10.220.30 201 339 5.5E-38 T 11-10-2018 AMK58_25255 8741c4ce41df6a8ff61b0cb458a6046e 340 SUPERFAMILY SSF48029 8 119 5.75E-18 T 11-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical AMK58_25255 8741c4ce41df6a8ff61b0cb458a6046e 340 Pfam PF14842 FliG N-terminal domain 12 113 1.1E-22 T 11-10-2018 IPR028263 Flagellar motor switch protein FliG, N-terminal domain AMK58_25255 8741c4ce41df6a8ff61b0cb458a6046e 340 PRINTS PR00954 Flagellar motor switch protein FliG signature 200 225 1.2E-45 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AMK58_25255 8741c4ce41df6a8ff61b0cb458a6046e 340 PRINTS PR00954 Flagellar motor switch protein FliG signature 231 251 1.2E-45 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AMK58_25255 8741c4ce41df6a8ff61b0cb458a6046e 340 PRINTS PR00954 Flagellar motor switch protein FliG signature 277 303 1.2E-45 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AMK58_25255 8741c4ce41df6a8ff61b0cb458a6046e 340 PRINTS PR00954 Flagellar motor switch protein FliG signature 12 28 1.2E-45 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AMK58_25255 8741c4ce41df6a8ff61b0cb458a6046e 340 PRINTS PR00954 Flagellar motor switch protein FliG signature 253 273 1.2E-45 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AMK58_25255 8741c4ce41df6a8ff61b0cb458a6046e 340 PRINTS PR00954 Flagellar motor switch protein FliG signature 41 67 1.2E-45 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AMK58_25255 8741c4ce41df6a8ff61b0cb458a6046e 340 PRINTS PR00954 Flagellar motor switch protein FliG signature 120 143 1.2E-45 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AMK58_25255 8741c4ce41df6a8ff61b0cb458a6046e 340 Pfam PF14841 FliG middle domain 123 193 5.8E-21 T 11-10-2018 IPR032779 Flagellar motor switch protein FliG, middle domain AMK58_25255 8741c4ce41df6a8ff61b0cb458a6046e 340 Gene3D G3DSA:1.10.220.30 6 90 1.4E-14 T 11-10-2018 AMK58_25255 8741c4ce41df6a8ff61b0cb458a6046e 340 Gene3D G3DSA:1.10.220.30 96 196 3.8E-22 T 11-10-2018 AMK58_25255 8741c4ce41df6a8ff61b0cb458a6046e 340 Pfam PF01706 FliG C-terminal domain 223 329 1.4E-33 T 11-10-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal AMK58_14385 15e97c1ddb394d970419367cc57f67fe 545 Gene3D G3DSA:1.20.1250.20 21 409 1.6E-37 T 11-10-2018 AMK58_14385 15e97c1ddb394d970419367cc57f67fe 545 SUPERFAMILY SSF103473 26 412 4.45E-48 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_14385 15e97c1ddb394d970419367cc57f67fe 545 Pfam PF05977 Transmembrane secretion effector 20 536 3.0E-197 T 11-10-2018 IPR010290 Transmembrane secretion effector AMK58_27335 13a0bb0502fefe47030e5d1f08b6526e 255 Gene3D G3DSA:3.60.140.10 1 255 1.1E-87 T 11-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily AMK58_27335 13a0bb0502fefe47030e5d1f08b6526e 255 SUPERFAMILY SSF64438 8 253 9.52E-82 T 11-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic AMK58_27335 13a0bb0502fefe47030e5d1f08b6526e 255 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 29 244 3.7E-48 T 11-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase AMK58_27335 13a0bb0502fefe47030e5d1f08b6526e 255 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 18 251 1.0E-69 T 11-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase AMK58_16945 b5748e2b083bd538e916412b98ebf399 166 Pfam PF00436 Single-strand binding protein family 1 98 1.1E-17 T 11-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 AMK58_16945 b5748e2b083bd538e916412b98ebf399 166 Gene3D G3DSA:2.40.50.140 1 126 1.6E-25 T 11-10-2018 AMK58_16945 b5748e2b083bd538e916412b98ebf399 166 SUPERFAMILY SSF50249 1 166 8.81E-32 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_16945 b5748e2b083bd538e916412b98ebf399 166 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 6 166 3.1E-19 T 11-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 AMK58_14445 684652f13127788c0445b4774beaeab3 965 Gene3D G3DSA:3.40.50.2300 843 965 6.1E-24 T 11-10-2018 AMK58_14445 684652f13127788c0445b4774beaeab3 965 SUPERFAMILY SSF55785 350 444 8.72E-15 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_14445 684652f13127788c0445b4774beaeab3 965 Pfam PF08448 PAS fold 483 586 5.5E-9 T 11-10-2018 IPR013656 PAS fold-4 AMK58_14445 684652f13127788c0445b4774beaeab3 965 Pfam PF08448 PAS fold 369 466 1.3E-10 T 11-10-2018 IPR013656 PAS fold-4 AMK58_14445 684652f13127788c0445b4774beaeab3 965 Gene3D G3DSA:1.10.287.130 580 667 1.5E-17 T 11-10-2018 AMK58_14445 684652f13127788c0445b4774beaeab3 965 Pfam PF00512 His Kinase A (phospho-acceptor) domain 604 669 3.7E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_14445 684652f13127788c0445b4774beaeab3 965 SMART SM00387 713 824 7.1E-28 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_14445 684652f13127788c0445b4774beaeab3 965 SMART SM00304 299 352 1.3E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_14445 684652f13127788c0445b4774beaeab3 965 Pfam PF00072 Response regulator receiver domain 847 959 4.0E-14 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_14445 684652f13127788c0445b4774beaeab3 965 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 361 470 1.5E-6 T 11-10-2018 IPR000014 PAS domain AMK58_14445 684652f13127788c0445b4774beaeab3 965 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 476 591 1.4E-19 T 11-10-2018 IPR000014 PAS domain AMK58_14445 684652f13127788c0445b4774beaeab3 965 Gene3D G3DSA:3.30.565.10 675 825 4.1E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_14445 684652f13127788c0445b4774beaeab3 965 PRINTS PR00344 Bacterial sensor protein C-terminal signature 808 821 4.3E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_14445 684652f13127788c0445b4774beaeab3 965 PRINTS PR00344 Bacterial sensor protein C-terminal signature 784 802 4.3E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_14445 684652f13127788c0445b4774beaeab3 965 PRINTS PR00344 Bacterial sensor protein C-terminal signature 749 763 4.3E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_14445 684652f13127788c0445b4774beaeab3 965 PRINTS PR00344 Bacterial sensor protein C-terminal signature 767 777 4.3E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_14445 684652f13127788c0445b4774beaeab3 965 Gene3D G3DSA:3.30.450.20 31 171 2.5E-24 T 11-10-2018 AMK58_14445 684652f13127788c0445b4774beaeab3 965 Pfam PF02743 Cache domain 34 250 3.7E-12 T 11-10-2018 IPR033479 Double Cache domain 1 AMK58_14445 684652f13127788c0445b4774beaeab3 965 Pfam PF00672 HAMP domain 301 348 9.4E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_14445 684652f13127788c0445b4774beaeab3 965 Gene3D G3DSA:3.30.450.20 356 462 2.8E-19 T 11-10-2018 AMK58_14445 684652f13127788c0445b4774beaeab3 965 SMART SM00448 845 959 6.8E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_14445 684652f13127788c0445b4774beaeab3 965 SMART SM00091 362 427 1.2E-10 T 11-10-2018 IPR000014 PAS domain AMK58_14445 684652f13127788c0445b4774beaeab3 965 SMART SM00091 476 542 2.2E-7 T 11-10-2018 IPR000014 PAS domain AMK58_14445 684652f13127788c0445b4774beaeab3 965 SUPERFAMILY SSF47384 589 669 2.75E-14 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_14445 684652f13127788c0445b4774beaeab3 965 Gene3D G3DSA:3.30.450.20 463 579 5.1E-22 T 11-10-2018 AMK58_14445 684652f13127788c0445b4774beaeab3 965 Gene3D G3DSA:1.20.1480.50 264 355 3.4E-6 T 11-10-2018 AMK58_14445 684652f13127788c0445b4774beaeab3 965 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 714 822 4.9E-20 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_14445 684652f13127788c0445b4774beaeab3 965 SMART SM00388 604 669 2.9E-12 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_14445 684652f13127788c0445b4774beaeab3 965 SUPERFAMILY SSF55874 659 824 6.42E-38 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_14445 684652f13127788c0445b4774beaeab3 965 SUPERFAMILY SSF52172 847 962 1.39E-24 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_14445 684652f13127788c0445b4774beaeab3 965 SUPERFAMILY SSF158472 300 348 2.09E-6 T 11-10-2018 AMK58_14445 684652f13127788c0445b4774beaeab3 965 SUPERFAMILY SSF55785 487 593 3.38E-21 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_12175 162d33a4f5a3dd6f221ef5f2da699ca7 245 SUPERFAMILY SSF55120 1 245 7.62E-81 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMK58_12175 162d33a4f5a3dd6f221ef5f2da699ca7 245 Gene3D G3DSA:3.30.70.660 108 243 3.8E-45 T 11-10-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0003723|GO:0009982 AMK58_12175 162d33a4f5a3dd6f221ef5f2da699ca7 245 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 5 239 1.0E-53 T 11-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMK58_12175 162d33a4f5a3dd6f221ef5f2da699ca7 245 Pfam PF01416 tRNA pseudouridine synthase 9 103 3.2E-10 T 11-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMK58_12175 162d33a4f5a3dd6f221ef5f2da699ca7 245 Pfam PF01416 tRNA pseudouridine synthase 144 245 2.7E-31 T 11-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMK58_12175 162d33a4f5a3dd6f221ef5f2da699ca7 245 Gene3D G3DSA:3.30.70.580 1 106 5.4E-33 T 11-10-2018 AMK58_12175 162d33a4f5a3dd6f221ef5f2da699ca7 245 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 2 245 33.496 T 11-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMK58_12175 162d33a4f5a3dd6f221ef5f2da699ca7 245 PIRSF PIRSF001430 1 245 2.9E-67 T 11-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMK58_15685 95e351a6ddd64a36870ce11b8387e467 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 128 136 1.0E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15685 95e351a6ddd64a36870ce11b8387e467 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 1.0E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15685 95e351a6ddd64a36870ce11b8387e467 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 168 1.0E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15685 95e351a6ddd64a36870ce11b8387e467 247 SUPERFAMILY SSF51735 1 247 2.22E-78 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_15685 95e351a6ddd64a36870ce11b8387e467 247 Gene3D G3DSA:3.40.50.720 2 247 5.4E-81 T 11-10-2018 AMK58_15685 95e351a6ddd64a36870ce11b8387e467 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 1.1E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15685 95e351a6ddd64a36870ce11b8387e467 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 138 1.1E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15685 95e351a6ddd64a36870ce11b8387e467 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 149 168 1.1E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15685 95e351a6ddd64a36870ce11b8387e467 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 187 1.1E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15685 95e351a6ddd64a36870ce11b8387e467 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 1.1E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15685 95e351a6ddd64a36870ce11b8387e467 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.1E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15685 95e351a6ddd64a36870ce11b8387e467 247 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 136 164 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMK58_15685 95e351a6ddd64a36870ce11b8387e467 247 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 246 2.9E-59 T 11-10-2018 AMK58_18365 3d4a9b5475ac11819d7671a4b9def6d1 256 Gene3D G3DSA:3.40.50.720 1 255 9.9E-56 T 11-10-2018 AMK58_18365 3d4a9b5475ac11819d7671a4b9def6d1 256 SUPERFAMILY SSF51735 9 255 3.72E-57 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_18365 3d4a9b5475ac11819d7671a4b9def6d1 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 254 1.6E-40 T 11-10-2018 AMK58_18365 3d4a9b5475ac11819d7671a4b9def6d1 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 148 3.0E-5 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_18365 3d4a9b5475ac11819d7671a4b9def6d1 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 179 3.0E-5 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_18365 3d4a9b5475ac11819d7671a4b9def6d1 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 147 175 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMK58_18365 3d4a9b5475ac11819d7671a4b9def6d1 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 1.5E-17 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_18365 3d4a9b5475ac11819d7671a4b9def6d1 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 1.5E-17 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_18365 3d4a9b5475ac11819d7671a4b9def6d1 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 1.5E-17 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_18365 3d4a9b5475ac11819d7671a4b9def6d1 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 1.5E-17 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_18635 7101d73265ca16ec2e01f08e1873a60d 236 Gene3D G3DSA:3.40.50.1820 5 236 2.1E-45 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_18635 7101d73265ca16ec2e01f08e1873a60d 236 Pfam PF12697 Alpha/beta hydrolase family 17 228 3.6E-14 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_18635 7101d73265ca16ec2e01f08e1873a60d 236 SUPERFAMILY SSF53474 11 233 2.22E-44 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_25690 0f8f75b9d7d28b1bb395e2d4242e5aef 591 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 441 460 - T 11-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 AMK58_25690 0f8f75b9d7d28b1bb395e2d4242e5aef 591 Gene3D G3DSA:3.40.50.970 373 572 5.7E-46 T 11-10-2018 AMK58_25690 0f8f75b9d7d28b1bb395e2d4242e5aef 591 SUPERFAMILY SSF52518 1 179 1.36E-41 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMK58_25690 0f8f75b9d7d28b1bb395e2d4242e5aef 591 Gene3D G3DSA:3.40.50.970 1 181 4.0E-45 T 11-10-2018 AMK58_25690 0f8f75b9d7d28b1bb395e2d4242e5aef 591 Gene3D G3DSA:3.40.50.1220 183 361 2.9E-45 T 11-10-2018 AMK58_25690 0f8f75b9d7d28b1bb395e2d4242e5aef 591 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 187 324 2.6E-32 T 11-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AMK58_25690 0f8f75b9d7d28b1bb395e2d4242e5aef 591 TIGRFAM TIGR03457 sulphoacet_xsc: sulfoacetaldehyde acetyltransferase 2 577 2.0E-298 T 11-10-2018 IPR017820 Sulphoacetaldehyde acetyltransferase GO:0000287|GO:0005737|GO:0019529|GO:0030976|GO:0050487 KEGG: 00430+2.3.3.15|MetaCyc: PWY-1281|MetaCyc: PWY-6637 AMK58_25690 0f8f75b9d7d28b1bb395e2d4242e5aef 591 SUPERFAMILY SSF52467 153 356 3.28E-41 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AMK58_25690 0f8f75b9d7d28b1bb395e2d4242e5aef 591 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 404 547 1.0E-28 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMK58_25690 0f8f75b9d7d28b1bb395e2d4242e5aef 591 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 3 168 4.5E-41 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AMK58_25690 0f8f75b9d7d28b1bb395e2d4242e5aef 591 SUPERFAMILY SSF52518 378 588 1.41E-45 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMK58_23055 d86381e6a9ad74320ccec39ea41c00dc 573 ProSitePatterns PS00211 ABC transporters family signature. 466 480 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_23055 d86381e6a9ad74320ccec39ea41c00dc 573 SUPERFAMILY SSF52540 319 553 1.62E-66 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_23055 d86381e6a9ad74320ccec39ea41c00dc 573 Gene3D G3DSA:1.20.1560.10 8 313 1.7E-24 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMK58_23055 d86381e6a9ad74320ccec39ea41c00dc 573 Pfam PF00005 ABC transporter 346 493 7.5E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_23055 d86381e6a9ad74320ccec39ea41c00dc 573 SMART SM00382 355 555 3.7E-18 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_23055 d86381e6a9ad74320ccec39ea41c00dc 573 Gene3D G3DSA:3.40.50.300 318 562 2.6E-69 T 11-10-2018 AMK58_23055 d86381e6a9ad74320ccec39ea41c00dc 573 SUPERFAMILY SSF90123 12 313 5.49E-35 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMK58_23055 d86381e6a9ad74320ccec39ea41c00dc 573 TIGRFAM TIGR01842 type_I_sec_PrtD: type I secretion system ATPase 18 554 5.2E-188 T 11-10-2018 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 AMK58_23055 d86381e6a9ad74320ccec39ea41c00dc 573 Pfam PF00664 ABC transporter transmembrane region 21 285 4.4E-8 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMK58_12420 06adbfd9b57268576ff263cd0975dfec 160 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 10 105 1.3E-13 T 11-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 AMK58_12420 06adbfd9b57268576ff263cd0975dfec 160 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 62 76 - T 11-10-2018 IPR020539 Ribonuclease P, conserved site GO:0004526 AMK58_12420 06adbfd9b57268576ff263cd0975dfec 160 Pfam PF00825 Ribonuclease P 7 120 2.8E-23 T 11-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 AMK58_12420 06adbfd9b57268576ff263cd0975dfec 160 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 12 98 6.0E-4 T 11-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 AMK58_12420 06adbfd9b57268576ff263cd0975dfec 160 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 5 123 16.132 T 11-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 AMK58_12420 06adbfd9b57268576ff263cd0975dfec 160 Gene3D G3DSA:3.30.230.10 6 128 2.3E-24 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMK58_12420 06adbfd9b57268576ff263cd0975dfec 160 SUPERFAMILY SSF54211 6 124 2.33E-25 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMK58_18590 7ee92e66129eafd165c4d79148ce960f 340 Gene3D G3DSA:3.30.200.20 7 113 1.4E-11 T 11-10-2018 AMK58_18590 7ee92e66129eafd165c4d79148ce960f 340 Gene3D G3DSA:3.90.1200.10 114 312 2.7E-11 T 11-10-2018 AMK58_18590 7ee92e66129eafd165c4d79148ce960f 340 SUPERFAMILY SSF56112 12 313 9.67E-46 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily AMK58_18590 7ee92e66129eafd165c4d79148ce960f 340 Pfam PF01636 Phosphotransferase enzyme family 34 241 1.1E-16 T 11-10-2018 IPR002575 Aminoglycoside phosphotransferase AMK58_20660 094212d5d317b08d2c2c9da88fdff09f 210 SMART SM00849 12 192 1.3E-35 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMK58_20660 094212d5d317b08d2c2c9da88fdff09f 210 Pfam PF00753 Metallo-beta-lactamase superfamily 9 192 3.6E-27 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMK58_20660 094212d5d317b08d2c2c9da88fdff09f 210 Gene3D G3DSA:3.60.15.10 1 210 1.5E-77 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMK58_20660 094212d5d317b08d2c2c9da88fdff09f 210 SUPERFAMILY SSF56281 5 209 2.17E-55 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMK58_04630 c64898b03d29fe7fe62f6a8394bc58f6 471 SUPERFAMILY SSF53807 18 456 4.25E-138 T 11-10-2018 AMK58_04630 c64898b03d29fe7fe62f6a8394bc58f6 471 Gene3D G3DSA:3.40.50.12380 178 450 5.9E-99 T 11-10-2018 AMK58_04630 c64898b03d29fe7fe62f6a8394bc58f6 471 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 43 442 1.4E-105 T 11-10-2018 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 AMK58_04630 c64898b03d29fe7fe62f6a8394bc58f6 471 Gene3D G3DSA:3.40.50.1980 29 177 2.7E-50 T 11-10-2018 AMK58_04630 c64898b03d29fe7fe62f6a8394bc58f6 471 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 127 141 - T 11-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 AMK58_04630 c64898b03d29fe7fe62f6a8394bc58f6 471 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 61 68 - T 11-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 AMK58_04630 c64898b03d29fe7fe62f6a8394bc58f6 471 TIGRFAM TIGR01283 nifE: nitrogenase MoFe cofactor biosynthesis protein NifE 3 456 1.1E-192 T 11-10-2018 IPR005973 Nitrogenase MoFe cofactor biosynthesis protein NifE GO:0009399|GO:0065003 AMK58_28100 b199916286bef4310520f821ab02dc71 158 Pfam PF01799 [2Fe-2S] binding domain 73 146 1.0E-25 T 11-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMK58_28100 b199916286bef4310520f821ab02dc71 158 SUPERFAMILY SSF47741 80 151 4.19E-27 T 11-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily AMK58_28100 b199916286bef4310520f821ab02dc71 158 SUPERFAMILY SSF54292 2 77 3.8E-25 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMK58_28100 b199916286bef4310520f821ab02dc71 158 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 6 62 9.2E-7 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMK58_28100 b199916286bef4310520f821ab02dc71 158 Gene3D G3DSA:1.10.150.120 73 158 3.7E-24 T 11-10-2018 AMK58_28100 b199916286bef4310520f821ab02dc71 158 Gene3D G3DSA:3.10.20.30 2 72 4.9E-26 T 11-10-2018 IPR012675 Beta-grasp domain superfamily AMK58_28100 b199916286bef4310520f821ab02dc71 158 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 39 47 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AMK58_24555 51e5c66661fe3ad78e1b8e920a1a9fe3 284 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 12 108 2.2E-11 T 11-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal AMK58_24555 51e5c66661fe3ad78e1b8e920a1a9fe3 284 Gene3D G3DSA:1.10.3730.10 174 279 1.1E-33 T 11-10-2018 AMK58_24555 51e5c66661fe3ad78e1b8e920a1a9fe3 284 SUPERFAMILY SSF51735 11 168 1.14E-28 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_24555 51e5c66661fe3ad78e1b8e920a1a9fe3 284 Gene3D G3DSA:3.40.50.720 9 173 4.1E-36 T 11-10-2018 AMK58_24555 51e5c66661fe3ad78e1b8e920a1a9fe3 284 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 172 277 1.9E-29 T 11-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 AMK58_24555 51e5c66661fe3ad78e1b8e920a1a9fe3 284 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 10 277 23.865 T 11-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 AMK58_24555 51e5c66661fe3ad78e1b8e920a1a9fe3 284 PIRSF PIRSF000193 10 280 4.2E-57 T 11-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 AMK58_24555 51e5c66661fe3ad78e1b8e920a1a9fe3 284 SUPERFAMILY SSF48179 171 278 1.0E-26 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMK58_24555 51e5c66661fe3ad78e1b8e920a1a9fe3 284 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 12 277 1.4E-68 T 11-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 AMK58_23175 cfbdb80f29d944a138f8b0bcc88286d9 1213 Gene3D G3DSA:1.10.287.130 507 586 3.0E-25 T 11-10-2018 AMK58_23175 cfbdb80f29d944a138f8b0bcc88286d9 1213 SUPERFAMILY SSF55874 575 750 6.55E-46 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_23175 cfbdb80f29d944a138f8b0bcc88286d9 1213 PRINTS PR00344 Bacterial sensor protein C-terminal signature 735 748 2.4E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_23175 cfbdb80f29d944a138f8b0bcc88286d9 1213 PRINTS PR00344 Bacterial sensor protein C-terminal signature 694 704 2.4E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_23175 cfbdb80f29d944a138f8b0bcc88286d9 1213 PRINTS PR00344 Bacterial sensor protein C-terminal signature 676 690 2.4E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_23175 cfbdb80f29d944a138f8b0bcc88286d9 1213 PRINTS PR00344 Bacterial sensor protein C-terminal signature 711 729 2.4E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_23175 cfbdb80f29d944a138f8b0bcc88286d9 1213 SUPERFAMILY SSF47226 1091 1200 1.57E-15 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMK58_23175 cfbdb80f29d944a138f8b0bcc88286d9 1213 Pfam PF01627 Hpt domain 1118 1194 2.5E-8 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMK58_23175 cfbdb80f29d944a138f8b0bcc88286d9 1213 SUPERFAMILY SSF47384 507 588 4.12E-21 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_23175 cfbdb80f29d944a138f8b0bcc88286d9 1213 Gene3D G3DSA:1.20.120.160 1096 1202 1.2E-10 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMK58_23175 cfbdb80f29d944a138f8b0bcc88286d9 1213 Pfam PF00672 HAMP domain 453 501 5.1E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_23175 cfbdb80f29d944a138f8b0bcc88286d9 1213 SMART SM00448 930 1053 1.4E-31 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_23175 cfbdb80f29d944a138f8b0bcc88286d9 1213 Gene3D G3DSA:1.10.8.500 453 504 4.9E-11 T 11-10-2018 AMK58_23175 cfbdb80f29d944a138f8b0bcc88286d9 1213 Pfam PF00072 Response regulator receiver domain 932 1053 2.9E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_23175 cfbdb80f29d944a138f8b0bcc88286d9 1213 Pfam PF00512 His Kinase A (phospho-acceptor) domain 521 586 1.4E-17 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_23175 cfbdb80f29d944a138f8b0bcc88286d9 1213 Gene3D G3DSA:3.40.50.12740 930 1095 7.8E-37 T 11-10-2018 AMK58_23175 cfbdb80f29d944a138f8b0bcc88286d9 1213 SUPERFAMILY SSF158472 453 502 5.62E-7 T 11-10-2018 AMK58_23175 cfbdb80f29d944a138f8b0bcc88286d9 1213 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 633 749 6.8E-29 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_23175 cfbdb80f29d944a138f8b0bcc88286d9 1213 SMART SM00387 633 751 6.0E-39 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_23175 cfbdb80f29d944a138f8b0bcc88286d9 1213 Gene3D G3DSA:3.30.565.10 587 753 3.7E-52 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_23175 cfbdb80f29d944a138f8b0bcc88286d9 1213 SMART SM00304 453 506 7.4E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_23175 cfbdb80f29d944a138f8b0bcc88286d9 1213 SMART SM00388 521 586 5.5E-22 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_23175 cfbdb80f29d944a138f8b0bcc88286d9 1213 SUPERFAMILY SSF52172 931 1063 1.57E-33 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_16160 3a11b061ed88ac5c2839b17454b97d16 251 SUPERFAMILY SSF51735 1 237 8.59E-67 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_16160 3a11b061ed88ac5c2839b17454b97d16 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 1 237 7.5E-54 T 11-10-2018 AMK58_16160 3a11b061ed88ac5c2839b17454b97d16 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 65 76 2.6E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_16160 3a11b061ed88ac5c2839b17454b97d16 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 176 2.6E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_16160 3a11b061ed88ac5c2839b17454b97d16 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 201 221 2.6E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_16160 3a11b061ed88ac5c2839b17454b97d16 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 112 128 2.6E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_16160 3a11b061ed88ac5c2839b17454b97d16 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 138 157 2.6E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_16160 3a11b061ed88ac5c2839b17454b97d16 251 Gene3D G3DSA:3.40.50.720 1 240 1.9E-64 T 11-10-2018 AMK58_24320 40540900d24d8b3c8c58027deb248bab 527 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 91 442 4.9E-88 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain AMK58_24320 40540900d24d8b3c8c58027deb248bab 527 PIRSF PIRSF002741 40 523 1.5E-102 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMK58_24320 40540900d24d8b3c8c58027deb248bab 527 Gene3D G3DSA:3.40.190.10 209 509 4.5E-123 T 11-10-2018 AMK58_24320 40540900d24d8b3c8c58027deb248bab 527 SUPERFAMILY SSF53850 48 516 4.95E-122 T 11-10-2018 AMK58_24320 40540900d24d8b3c8c58027deb248bab 527 Gene3D G3DSA:3.90.76.10 56 208 4.5E-123 T 11-10-2018 AMK58_24320 40540900d24d8b3c8c58027deb248bab 527 Gene3D G3DSA:3.10.105.10 284 499 4.5E-123 T 11-10-2018 AMK58_06460 60ef385d24288a5ed6295f9c61a834ed 368 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 247 337 3.1E-10 T 11-10-2018 IPR023885 4Fe4S-binding SPASM domain AMK58_06460 60ef385d24288a5ed6295f9c61a834ed 368 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 20 31 - T 11-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMK58_06460 60ef385d24288a5ed6295f9c61a834ed 368 Pfam PF13186 Iron-sulfur cluster-binding domain 244 310 3.8E-9 T 11-10-2018 IPR023885 4Fe4S-binding SPASM domain AMK58_06460 60ef385d24288a5ed6295f9c61a834ed 368 Gene3D G3DSA:3.20.20.70 13 302 6.1E-42 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_06460 60ef385d24288a5ed6295f9c61a834ed 368 Hamap MF_00660 Coenzyme PQQ synthesis protein E [pqqE]. 1 368 169.064 T 11-10-2018 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria GO:0018189|GO:0051539 AMK58_06460 60ef385d24288a5ed6295f9c61a834ed 368 PIRSF PIRSF037420 4 355 9.4E-108 T 11-10-2018 IPR017200 Coenzyme PQQ synthesis protein E AMK58_06460 60ef385d24288a5ed6295f9c61a834ed 368 Pfam PF04055 Radical SAM superfamily 20 173 1.5E-18 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMK58_06460 60ef385d24288a5ed6295f9c61a834ed 368 Pfam PF13353 4Fe-4S single cluster domain 21 89 4.0E-6 T 11-10-2018 AMK58_06460 60ef385d24288a5ed6295f9c61a834ed 368 SMART SM00729 14 221 6.3E-5 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMK58_06460 60ef385d24288a5ed6295f9c61a834ed 368 SUPERFAMILY SSF102114 12 319 1.31E-67 T 11-10-2018 AMK58_06460 60ef385d24288a5ed6295f9c61a834ed 368 TIGRFAM TIGR02109 PQQ_syn_pqqE: coenzyme PQQ biosynthesis enzyme PqqE 10 364 1.4E-162 T 11-10-2018 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria GO:0018189|GO:0051539 AMK58_26480 72e559e84d5afa2b97c61690e0643263 394 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 64 296 8.0E-14 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMK58_26480 72e559e84d5afa2b97c61690e0643263 394 Gene3D G3DSA:1.10.287.470 100 173 4.1E-109 T 11-10-2018 AMK58_26480 72e559e84d5afa2b97c61690e0643263 394 Gene3D G3DSA:2.40.50.100 65 209 4.1E-109 T 11-10-2018 AMK58_26480 72e559e84d5afa2b97c61690e0643263 394 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 41 378 2.9E-87 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMK58_26480 72e559e84d5afa2b97c61690e0643263 394 Pfam PF00529 HlyD membrane-fusion protein of T1SS 297 363 1.0E-9 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMK58_26480 72e559e84d5afa2b97c61690e0643263 394 SUPERFAMILY SSF111369 53 303 1.22E-83 T 11-10-2018 AMK58_26480 72e559e84d5afa2b97c61690e0643263 394 Gene3D G3DSA:2.40.420.20 307 376 4.1E-109 T 11-10-2018 AMK58_26480 72e559e84d5afa2b97c61690e0643263 394 Gene3D G3DSA:2.40.30.170 52 306 4.1E-109 T 11-10-2018 AMK58_01270 96c595d049283f9fd74da534ea7a378a 798 Gene3D G3DSA:2.40.50.140 39 154 1.9E-66 T 11-10-2018 AMK58_01270 96c595d049283f9fd74da534ea7a378a 798 Gene3D G3DSA:3.30.70.380 705 798 2.3E-25 T 11-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 AMK58_01270 96c595d049283f9fd74da534ea7a378a 798 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 791 42.137 T 11-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 AMK58_01270 96c595d049283f9fd74da534ea7a378a 798 SUPERFAMILY SSF50249 36 195 8.57E-44 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_01270 96c595d049283f9fd74da534ea7a378a 798 SUPERFAMILY SSF56037 197 395 8.11E-71 T 11-10-2018 AMK58_01270 96c595d049283f9fd74da534ea7a378a 798 Gene3D G3DSA:3.50.40.10 199 392 3.9E-71 T 11-10-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 KEGG: 00970+6.1.1.20 AMK58_01270 96c595d049283f9fd74da534ea7a378a 798 Gene3D G3DSA:3.30.930.10 489 687 1.3E-39 T 11-10-2018 AMK58_01270 96c595d049283f9fd74da534ea7a378a 798 SMART SM00873 212 384 1.9E-83 T 11-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 AMK58_01270 96c595d049283f9fd74da534ea7a378a 798 Pfam PF03484 tRNA synthetase B5 domain 404 470 5.9E-16 T 11-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 AMK58_01270 96c595d049283f9fd74da534ea7a378a 798 SUPERFAMILY SSF55681 466 687 2.68E-39 T 11-10-2018 AMK58_01270 96c595d049283f9fd74da534ea7a378a 798 SMART SM00896 704 797 1.3E-41 T 11-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 AMK58_01270 96c595d049283f9fd74da534ea7a378a 798 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 797 3.2E-215 T 11-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 AMK58_01270 96c595d049283f9fd74da534ea7a378a 798 Gene3D G3DSA:3.30.56.10 5 181 1.9E-66 T 11-10-2018 AMK58_01270 96c595d049283f9fd74da534ea7a378a 798 Pfam PF03147 Ferredoxin-fold anticodon binding domain 704 797 4.0E-26 T 11-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 AMK58_01270 96c595d049283f9fd74da534ea7a378a 798 Pfam PF01588 Putative tRNA binding domain 45 145 5.5E-24 T 11-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 AMK58_01270 96c595d049283f9fd74da534ea7a378a 798 Gene3D G3DSA:3.30.56.10 400 475 5.6E-21 T 11-10-2018 AMK58_01270 96c595d049283f9fd74da534ea7a378a 798 SMART SM00874 400 470 1.1E-25 T 11-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 AMK58_01270 96c595d049283f9fd74da534ea7a378a 798 Pfam PF03483 B3/4 domain 212 384 4.5E-62 T 11-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 AMK58_01270 96c595d049283f9fd74da534ea7a378a 798 SUPERFAMILY SSF46955 401 474 6.32E-16 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily AMK58_01270 96c595d049283f9fd74da534ea7a378a 798 SUPERFAMILY SSF54991 701 797 9.15E-28 T 11-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 AMK58_15670 1e58948ab757c08001363552c0bdbcff 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 1.0E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15670 1e58948ab757c08001363552c0bdbcff 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 1.0E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15670 1e58948ab757c08001363552c0bdbcff 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 1.0E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15670 1e58948ab757c08001363552c0bdbcff 261 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 258 1.4E-61 T 11-10-2018 AMK58_15670 1e58948ab757c08001363552c0bdbcff 261 Gene3D G3DSA:3.40.50.720 6 261 1.4E-85 T 11-10-2018 AMK58_15670 1e58948ab757c08001363552c0bdbcff 261 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMK58_15670 1e58948ab757c08001363552c0bdbcff 261 SUPERFAMILY SSF51735 5 259 1.12E-80 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_15670 1e58948ab757c08001363552c0bdbcff 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 2.5E-35 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15670 1e58948ab757c08001363552c0bdbcff 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 2.5E-35 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15670 1e58948ab757c08001363552c0bdbcff 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 2.5E-35 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15670 1e58948ab757c08001363552c0bdbcff 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 2.5E-35 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15670 1e58948ab757c08001363552c0bdbcff 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 2.5E-35 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15670 1e58948ab757c08001363552c0bdbcff 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 2.5E-35 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15670 1e58948ab757c08001363552c0bdbcff 261 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 172 7.0E-4 T 11-10-2018 AMK58_07245 5754f41b3f85a8fcc48e9e7255d3880a 294 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 246 268 4.4E-9 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AMK58_07245 5754f41b3f85a8fcc48e9e7255d3880a 294 SMART SM00382 36 246 1.6E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_07245 5754f41b3f85a8fcc48e9e7255d3880a 294 SUPERFAMILY SSF52540 10 269 6.59E-54 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_07245 5754f41b3f85a8fcc48e9e7255d3880a 294 Pfam PF00005 ABC transporter 28 196 2.4E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_07245 5754f41b3f85a8fcc48e9e7255d3880a 294 Gene3D G3DSA:3.40.50.300 1 274 2.7E-53 T 11-10-2018 AMK58_02430 b84b9dd035d0f77c6e124dda16f39c06 735 Gene3D G3DSA:3.30.450.20 143 279 1.8E-7 T 11-10-2018 AMK58_02430 b84b9dd035d0f77c6e124dda16f39c06 735 SMART SM00479 541 709 1.4E-53 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AMK58_02430 b84b9dd035d0f77c6e124dda16f39c06 735 SMART SM00091 155 221 0.0011 T 11-10-2018 IPR000014 PAS domain AMK58_02430 b84b9dd035d0f77c6e124dda16f39c06 735 Gene3D G3DSA:3.30.420.10 538 712 8.2E-50 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMK58_02430 b84b9dd035d0f77c6e124dda16f39c06 735 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 541 705 1.3E-34 T 11-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMK58_02430 b84b9dd035d0f77c6e124dda16f39c06 735 SUPERFAMILY SSF53098 535 710 1.01E-55 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMK58_02430 b84b9dd035d0f77c6e124dda16f39c06 735 SUPERFAMILY SSF55785 148 251 6.66E-7 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_02430 b84b9dd035d0f77c6e124dda16f39c06 735 Pfam PF00929 Exonuclease 543 700 2.7E-37 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AMK58_14955 508511c98f7f81ce94a33dbd18508640 254 Pfam PF00005 ABC transporter 23 177 5.1E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_14955 508511c98f7f81ce94a33dbd18508640 254 SMART SM00382 31 225 4.4E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_14955 508511c98f7f81ce94a33dbd18508640 254 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 225 247 1.4E-6 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AMK58_14955 508511c98f7f81ce94a33dbd18508640 254 SUPERFAMILY SSF52540 5 247 3.73E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_14955 508511c98f7f81ce94a33dbd18508640 254 Gene3D G3DSA:3.40.50.300 4 251 6.2E-55 T 11-10-2018 AMK58_27780 ef77ef17a25fcc3c2980aae18d220652 400 Gene3D G3DSA:1.20.1250.20 14 189 2.3E-14 T 11-10-2018 AMK58_27780 ef77ef17a25fcc3c2980aae18d220652 400 Pfam PF07690 Major Facilitator Superfamily 22 361 7.3E-24 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMK58_27780 ef77ef17a25fcc3c2980aae18d220652 400 Gene3D G3DSA:1.20.1250.20 209 400 2.6E-20 T 11-10-2018 AMK58_27780 ef77ef17a25fcc3c2980aae18d220652 400 SUPERFAMILY SSF103473 10 398 3.14E-44 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_24915 ef77ef17a25fcc3c2980aae18d220652 400 Gene3D G3DSA:1.20.1250.20 14 189 2.3E-14 T 11-10-2018 AMK58_24915 ef77ef17a25fcc3c2980aae18d220652 400 Pfam PF07690 Major Facilitator Superfamily 22 361 7.3E-24 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMK58_24915 ef77ef17a25fcc3c2980aae18d220652 400 Gene3D G3DSA:1.20.1250.20 209 400 2.6E-20 T 11-10-2018 AMK58_24915 ef77ef17a25fcc3c2980aae18d220652 400 SUPERFAMILY SSF103473 10 398 3.14E-44 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_20190 2adc9963b2666ddd85a703b72b95932b 260 Gene3D G3DSA:3.90.550.10 2 221 4.2E-24 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_20190 2adc9963b2666ddd85a703b72b95932b 260 SUPERFAMILY SSF53448 1 209 3.24E-32 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_20190 2adc9963b2666ddd85a703b72b95932b 260 Pfam PF00535 Glycosyl transferase family 2 8 117 8.1E-19 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMK58_05420 088a643c4e0d9989c32db95d054a9a80 181 SUPERFAMILY SSF101738 2 106 9.02E-40 T 11-10-2018 IPR036760 SspB-like superfamily AMK58_05420 088a643c4e0d9989c32db95d054a9a80 181 Pfam PF04386 Stringent starvation protein B 2 173 3.5E-46 T 11-10-2018 IPR007481 Stringent starvation protein B AMK58_05420 088a643c4e0d9989c32db95d054a9a80 181 Gene3D G3DSA:2.30.30.220 1 109 4.1E-45 T 11-10-2018 IPR036760 SspB-like superfamily AMK58_01555 324a901bc7ca8607afec5301a85713de 1156 Gene3D G3DSA:3.40.50.300 356 514 4.7E-28 T 11-10-2018 AMK58_01555 324a901bc7ca8607afec5301a85713de 1156 Gene3D G3DSA:3.40.50.300 575 678 4.8E-12 T 11-10-2018 AMK58_01555 324a901bc7ca8607afec5301a85713de 1156 SUPERFAMILY SSF52980 1004 1134 3.16E-7 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AMK58_01555 324a901bc7ca8607afec5301a85713de 1156 TIGRFAM TIGR02784 addA_alphas: double-strand break repair helicase AddA 18 1154 0.0 T 11-10-2018 IPR014151 DNA helicase, AddA type AMK58_01555 324a901bc7ca8607afec5301a85713de 1156 SUPERFAMILY SSF52540 7 895 3.01E-100 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_01555 324a901bc7ca8607afec5301a85713de 1156 Gene3D G3DSA:3.40.50.300 760 903 1.1E-21 T 11-10-2018 AMK58_01555 324a901bc7ca8607afec5301a85713de 1156 Gene3D G3DSA:3.90.320.10 1077 1152 1.5E-6 T 11-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal AMK58_01555 324a901bc7ca8607afec5301a85713de 1156 Pfam PF00580 UvrD/REP helicase N-terminal domain 26 479 2.5E-49 T 11-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 AMK58_01555 324a901bc7ca8607afec5301a85713de 1156 Pfam PF13361 UvrD-like helicase C-terminal domain 769 891 8.8E-14 T 11-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AMK58_01555 324a901bc7ca8607afec5301a85713de 1156 Pfam PF12705 PD-(D/E)XK nuclease superfamily 1001 1137 5.4E-11 T 11-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type AMK58_25455 2a37a6f8ec1b771c708207ae2759a216 884 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 630 658 - T 11-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AMK58_25455 2a37a6f8ec1b771c708207ae2759a216 884 Gene3D G3DSA:3.40.605.10 12 445 1.0E-177 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMK58_25455 2a37a6f8ec1b771c708207ae2759a216 884 Pfam PF00465 Iron-containing alcohol dehydrogenase 457 848 2.6E-113 T 11-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 AMK58_25455 2a37a6f8ec1b771c708207ae2759a216 884 PIRSF PIRSF000111 1 862 0.0 T 11-10-2018 IPR012079 Bifunctional aldehyde-alcohol dehydrogenase GO:0004022|GO:0006066|GO:0008774|GO:0015976|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396 AMK58_25455 2a37a6f8ec1b771c708207ae2759a216 884 SUPERFAMILY SSF53720 6 453 5.89E-79 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMK58_25455 2a37a6f8ec1b771c708207ae2759a216 884 Pfam PF00171 Aldehyde dehydrogenase family 4 268 1.1E-23 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMK58_25455 2a37a6f8ec1b771c708207ae2759a216 884 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 718 738 - T 11-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AMK58_25455 2a37a6f8ec1b771c708207ae2759a216 884 Gene3D G3DSA:1.20.1090.10 643 861 2.4E-65 T 11-10-2018 AMK58_25455 2a37a6f8ec1b771c708207ae2759a216 884 Gene3D G3DSA:3.40.309.10 218 404 1.0E-177 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMK58_25455 2a37a6f8ec1b771c708207ae2759a216 884 Gene3D G3DSA:3.40.50.1970 450 641 7.7E-54 T 11-10-2018 AMK58_25455 2a37a6f8ec1b771c708207ae2759a216 884 SUPERFAMILY SSF56796 449 863 1.01E-116 T 11-10-2018 AMK58_00770 37a1255c736d5a930aa53c24134acd8c 312 SUPERFAMILY SSF55120 10 237 2.27E-76 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMK58_00770 37a1255c736d5a930aa53c24134acd8c 312 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 181 239 8.8E-14 T 11-10-2018 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 AMK58_00770 37a1255c736d5a930aa53c24134acd8c 312 Gene3D G3DSA:3.30.2350.10 1 242 2.1E-84 T 11-10-2018 AMK58_00770 37a1255c736d5a930aa53c24134acd8c 312 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 10 310 18.585 T 11-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMK58_00770 37a1255c736d5a930aa53c24134acd8c 312 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 32 180 2.9E-50 T 11-10-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 AMK58_00770 37a1255c736d5a930aa53c24134acd8c 312 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 11 219 1.7E-69 T 11-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMK58_09365 c30efd11a79c6996fddfee67bba38d71 350 TIGRFAM TIGR00462 genX: EF-P lysine aminoacylase GenX 22 344 1.5E-115 T 11-10-2018 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 AMK58_09365 c30efd11a79c6996fddfee67bba38d71 350 Gene3D G3DSA:3.30.930.10 7 349 4.5E-96 T 11-10-2018 AMK58_09365 c30efd11a79c6996fddfee67bba38d71 350 Pfam PF00152 tRNA synthetases class II (D, K and N) 19 346 1.3E-39 T 11-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMK58_09365 c30efd11a79c6996fddfee67bba38d71 350 SUPERFAMILY SSF55681 17 347 1.31E-76 T 11-10-2018 AMK58_09365 c30efd11a79c6996fddfee67bba38d71 350 PRINTS PR00982 Lysyl-tRNA synthetase signature 35 45 1.6E-7 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AMK58_09365 c30efd11a79c6996fddfee67bba38d71 350 PRINTS PR00982 Lysyl-tRNA synthetase signature 103 120 1.6E-7 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AMK58_09365 c30efd11a79c6996fddfee67bba38d71 350 PRINTS PR00982 Lysyl-tRNA synthetase signature 233 249 1.6E-7 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AMK58_15330 2dac2b5999f35b471ea9f547d2c6ed73 89 Pfam PF10688 Bacterial inner membrane protein 6 70 5.1E-9 T 11-10-2018 IPR019629 Uncharacterised protein family HI1736/YgjV AMK58_26155 0df541196fc494389ee2082d119bfbaa 211 Pfam PF01081 KDPG and KHG aldolase 12 201 4.4E-61 T 11-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 AMK58_26155 0df541196fc494389ee2082d119bfbaa 211 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 126 139 - T 11-10-2018 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 AMK58_26155 0df541196fc494389ee2082d119bfbaa 211 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 38 47 - T 11-10-2018 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 AMK58_26155 0df541196fc494389ee2082d119bfbaa 211 SUPERFAMILY SSF51569 9 207 2.56E-57 T 11-10-2018 AMK58_26155 0df541196fc494389ee2082d119bfbaa 211 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 11 207 4.8E-66 T 11-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 AMK58_26155 0df541196fc494389ee2082d119bfbaa 211 Gene3D G3DSA:3.20.20.70 2 210 3.2E-63 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_19985 881b8fb1cbc6ab2d62b0799e394ed474 931 Gene3D G3DSA:2.160.20.10 751 865 6.5E-8 T 11-10-2018 IPR012334 Pectin lyase fold AMK58_19985 881b8fb1cbc6ab2d62b0799e394ed474 931 Gene3D G3DSA:2.160.20.10 530 749 3.3E-17 T 11-10-2018 IPR012334 Pectin lyase fold AMK58_19985 881b8fb1cbc6ab2d62b0799e394ed474 931 Pfam PF16841 Ca-dependent carbohydrate-binding module xylan-binding 147 238 1.6E-28 T 11-10-2018 IPR031768 Carbohydrate binding module, xylan-binding domain MetaCyc: PWY-6717|MetaCyc: PWY-6784 AMK58_19985 881b8fb1cbc6ab2d62b0799e394ed474 931 Pfam PF16841 Ca-dependent carbohydrate-binding module xylan-binding 12 104 1.7E-30 T 11-10-2018 IPR031768 Carbohydrate binding module, xylan-binding domain MetaCyc: PWY-6717|MetaCyc: PWY-6784 AMK58_19985 881b8fb1cbc6ab2d62b0799e394ed474 931 TIGRFAM TIGR03804 para_beta_helix: parallel beta-helix repeat 757 799 1.5E-7 T 11-10-2018 IPR022441 Parallel beta-helix repeat-2 Reactome: R-HSA-8951664|Reactome: R-HSA-983168 AMK58_19985 881b8fb1cbc6ab2d62b0799e394ed474 931 TIGRFAM TIGR03804 para_beta_helix: parallel beta-helix repeat 577 614 4.6E-6 T 11-10-2018 IPR022441 Parallel beta-helix repeat-2 Reactome: R-HSA-8951664|Reactome: R-HSA-983168 AMK58_19985 881b8fb1cbc6ab2d62b0799e394ed474 931 SUPERFAMILY SSF51126 321 878 6.94E-35 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor AMK58_19985 881b8fb1cbc6ab2d62b0799e394ed474 931 Gene3D G3DSA:2.60.60.40 10 125 6.1E-7 T 11-10-2018 AMK58_19985 881b8fb1cbc6ab2d62b0799e394ed474 931 Gene3D G3DSA:2.60.60.40 145 259 1.2E-8 T 11-10-2018 AMK58_19985 881b8fb1cbc6ab2d62b0799e394ed474 931 Gene3D G3DSA:2.160.20.10 285 401 9.8E-12 T 11-10-2018 IPR012334 Pectin lyase fold AMK58_19985 881b8fb1cbc6ab2d62b0799e394ed474 931 Pfam PF13229 Right handed beta helix region 554 715 1.4E-16 T 11-10-2018 IPR039448 Right handed beta helix domain AMK58_19985 881b8fb1cbc6ab2d62b0799e394ed474 931 SMART SM00710 582 603 0.28 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_19985 881b8fb1cbc6ab2d62b0799e394ed474 931 SMART SM00710 656 678 77.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_19985 881b8fb1cbc6ab2d62b0799e394ed474 931 SMART SM00710 764 785 3.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_19985 881b8fb1cbc6ab2d62b0799e394ed474 931 SMART SM00710 786 814 4600.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_19985 881b8fb1cbc6ab2d62b0799e394ed474 931 SMART SM00710 557 581 650.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_19985 881b8fb1cbc6ab2d62b0799e394ed474 931 SMART SM00710 820 842 1600.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_19985 881b8fb1cbc6ab2d62b0799e394ed474 931 SMART SM00710 604 626 36.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_19985 881b8fb1cbc6ab2d62b0799e394ed474 931 SMART SM00710 686 713 260.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_19985 881b8fb1cbc6ab2d62b0799e394ed474 931 SMART SM00710 628 655 2100.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_06980 983d26f070977b368bd645878fccc8f5 487 Gene3D G3DSA:3.20.20.60 5 332 1.5E-161 T 11-10-2018 AMK58_06980 983d26f070977b368bd645878fccc8f5 487 SUPERFAMILY SSF50800 73 167 2.97E-24 T 11-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily AMK58_06980 983d26f070977b368bd645878fccc8f5 487 SUPERFAMILY SSF52935 320 470 4.84E-36 T 11-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_06980 983d26f070977b368bd645878fccc8f5 487 PRINTS PR01050 Pyruvate kinase family signature 187 201 7.5E-63 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_06980 983d26f070977b368bd645878fccc8f5 487 PRINTS PR01050 Pyruvate kinase family signature 291 309 7.5E-63 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_06980 983d26f070977b368bd645878fccc8f5 487 PRINTS PR01050 Pyruvate kinase family signature 310 326 7.5E-63 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_06980 983d26f070977b368bd645878fccc8f5 487 PRINTS PR01050 Pyruvate kinase family signature 62 78 7.5E-63 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_06980 983d26f070977b368bd645878fccc8f5 487 PRINTS PR01050 Pyruvate kinase family signature 266 290 7.5E-63 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_06980 983d26f070977b368bd645878fccc8f5 487 PRINTS PR01050 Pyruvate kinase family signature 214 240 7.5E-63 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_06980 983d26f070977b368bd645878fccc8f5 487 PRINTS PR01050 Pyruvate kinase family signature 241 265 7.5E-63 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_06980 983d26f070977b368bd645878fccc8f5 487 Pfam PF02887 Pyruvate kinase, alpha/beta domain 355 468 6.2E-29 T 11-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_06980 983d26f070977b368bd645878fccc8f5 487 Gene3D G3DSA:2.40.33.10 73 169 1.5E-161 T 11-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_06980 983d26f070977b368bd645878fccc8f5 487 Gene3D G3DSA:3.40.1380.20 333 466 1.5E-161 T 11-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_06980 983d26f070977b368bd645878fccc8f5 487 Pfam PF00224 Pyruvate kinase, barrel domain 5 334 3.2E-109 T 11-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_06980 983d26f070977b368bd645878fccc8f5 487 SUPERFAMILY SSF51621 2 340 5.23E-94 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMK58_06980 983d26f070977b368bd645878fccc8f5 487 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 5 470 1.6E-144 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMK58_19050 7edf39e50df2034ec85bc5da367787fc 68 Pfam PF06568 Domain of unknown function (DUF1127) 22 57 1.9E-14 T 11-10-2018 IPR009506 Protein of unknown function DUF1127 AMK58_23855 b687d1fd04483d5b3a4eb5c9c0c7b2e1 562 SUPERFAMILY SSF58104 241 555 5.23E-60 T 11-10-2018 AMK58_23855 b687d1fd04483d5b3a4eb5c9c0c7b2e1 562 Pfam PF00672 HAMP domain 212 262 7.5E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_23855 b687d1fd04483d5b3a4eb5c9c0c7b2e1 562 Gene3D G3DSA:1.10.287.950 271 556 2.7E-51 T 11-10-2018 AMK58_23855 b687d1fd04483d5b3a4eb5c9c0c7b2e1 562 Gene3D G3DSA:1.20.1480.50 178 270 3.4E-16 T 11-10-2018 AMK58_23855 b687d1fd04483d5b3a4eb5c9c0c7b2e1 562 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 369 534 8.3E-30 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_23855 b687d1fd04483d5b3a4eb5c9c0c7b2e1 562 SMART SM00304 497 553 67.0 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_23855 b687d1fd04483d5b3a4eb5c9c0c7b2e1 562 SMART SM00304 212 265 3.4E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_23855 b687d1fd04483d5b3a4eb5c9c0c7b2e1 562 SMART SM00283 302 556 1.9E-41 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_23855 b687d1fd04483d5b3a4eb5c9c0c7b2e1 562 SUPERFAMILY SSF103190 82 180 7.59E-13 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily AMK58_23855 b687d1fd04483d5b3a4eb5c9c0c7b2e1 562 Pfam PF17202 Single cache domain 3 83 186 5.5E-34 T 11-10-2018 IPR033463 Single cache domain 3 AMK58_19120 bb1b760524005a6b7e41c7c6d6b6c9b0 332 SUPERFAMILY SSF56176 1 218 4.14E-60 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMK58_19120 bb1b760524005a6b7e41c7c6d6b6c9b0 332 Gene3D G3DSA:3.30.465.10 1 219 4.2E-82 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AMK58_19120 bb1b760524005a6b7e41c7c6d6b6c9b0 332 SUPERFAMILY SSF55447 223 325 1.96E-30 T 11-10-2018 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily AMK58_19120 bb1b760524005a6b7e41c7c6d6b6c9b0 332 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 3 218 5.9E-46 T 11-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 AMK58_19120 bb1b760524005a6b7e41c7c6d6b6c9b0 332 SMART SM01092 225 323 7.8E-33 T 11-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal AMK58_19120 bb1b760524005a6b7e41c7c6d6b6c9b0 332 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 226 323 2.1E-18 T 11-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal AMK58_19120 bb1b760524005a6b7e41c7c6d6b6c9b0 332 Gene3D G3DSA:3.30.390.50 222 326 1.1E-27 T 11-10-2018 AMK58_15455 e0a19df30815c9fcb519f4f7b1a955ba 228 Gene3D G3DSA:3.90.79.10 30 199 1.1E-52 T 11-10-2018 AMK58_15455 e0a19df30815c9fcb519f4f7b1a955ba 228 SUPERFAMILY SSF55811 40 193 1.9E-37 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMK58_15455 e0a19df30815c9fcb519f4f7b1a955ba 228 Pfam PF00293 NUDIX domain 41 160 9.6E-15 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMK58_15915 a1c695d793b6016f8f4b6be68a17e469 288 Pfam PF08340 Domain of unknown function (DUF1732) 204 288 2.2E-33 T 11-10-2018 IPR013551 Domain of unknown function DUF1732 AMK58_15915 a1c695d793b6016f8f4b6be68a17e469 288 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 1 288 7.3E-63 T 11-10-2018 IPR005229 Conserved hypothetical protein CHP00255 AMK58_15915 a1c695d793b6016f8f4b6be68a17e469 288 Pfam PF03755 YicC-like family, N-terminal region 1 151 2.0E-31 T 11-10-2018 IPR013527 YicC-like, N-terminal AMK58_16865 dc9cfada58da64a43ac2274812066778 285 Pfam PF05673 Protein of unknown function (DUF815) 33 279 6.3E-106 T 11-10-2018 IPR008533 Domain of unknown function DUF815 AMK58_16865 dc9cfada58da64a43ac2274812066778 285 Gene3D G3DSA:3.40.50.300 59 199 2.5E-6 T 11-10-2018 AMK58_16865 dc9cfada58da64a43ac2274812066778 285 SUPERFAMILY SSF52540 43 246 1.66E-20 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_01550 a56c08861d35402c4916fe83e838ca0a 107 SUPERFAMILY SSF52833 2 107 5.2E-41 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_01550 a56c08861d35402c4916fe83e838ca0a 107 PRINTS PR00421 Thioredoxin family signature 23 31 2.3E-10 T 11-10-2018 AMK58_01550 a56c08861d35402c4916fe83e838ca0a 107 PRINTS PR00421 Thioredoxin family signature 31 40 2.3E-10 T 11-10-2018 AMK58_01550 a56c08861d35402c4916fe83e838ca0a 107 PRINTS PR00421 Thioredoxin family signature 71 82 2.3E-10 T 11-10-2018 AMK58_01550 a56c08861d35402c4916fe83e838ca0a 107 Pfam PF00085 Thioredoxin 5 105 1.4E-34 T 11-10-2018 IPR013766 Thioredoxin domain GO:0045454 AMK58_01550 a56c08861d35402c4916fe83e838ca0a 107 ProSitePatterns PS00194 Thioredoxin family active site. 24 42 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AMK58_01550 a56c08861d35402c4916fe83e838ca0a 107 PIRSF PIRSF000077 1 107 1.3E-44 T 11-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AMK58_01550 a56c08861d35402c4916fe83e838ca0a 107 TIGRFAM TIGR01068 thioredoxin: thioredoxin 8 105 2.8E-39 T 11-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AMK58_01550 a56c08861d35402c4916fe83e838ca0a 107 Gene3D G3DSA:3.40.30.10 1 107 6.3E-37 T 11-10-2018 AMK58_06755 24a9711916ca21b061cfedda3e7c5643 464 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 18 394 3.1E-77 T 11-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 AMK58_06755 24a9711916ca21b061cfedda3e7c5643 464 SUPERFAMILY SSF103473 16 400 1.83E-61 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_06755 24a9711916ca21b061cfedda3e7c5643 464 Gene3D G3DSA:1.20.1720.10 19 397 3.1E-88 T 11-10-2018 AMK58_06755 24a9711916ca21b061cfedda3e7c5643 464 Pfam PF07690 Major Facilitator Superfamily 25 365 9.7E-42 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMK58_01615 937c6e7068c0595a41ca4bcc0cc99dfa 794 SMART SM00387 684 787 2.7E-8 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_01615 937c6e7068c0595a41ca4bcc0cc99dfa 794 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 684 786 1.3E-6 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_01615 937c6e7068c0595a41ca4bcc0cc99dfa 794 SUPERFAMILY SSF55785 420 537 9.6E-9 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_01615 937c6e7068c0595a41ca4bcc0cc99dfa 794 Gene3D G3DSA:3.30.565.10 645 788 1.8E-19 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_01615 937c6e7068c0595a41ca4bcc0cc99dfa 794 SUPERFAMILY SSF47384 553 638 5.3E-19 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_01615 937c6e7068c0595a41ca4bcc0cc99dfa 794 Pfam PF12860 PAS fold 313 425 1.6E-11 T 11-10-2018 AMK58_01615 937c6e7068c0595a41ca4bcc0cc99dfa 794 Pfam PF12860 PAS fold 442 554 1.1E-9 T 11-10-2018 AMK58_01615 937c6e7068c0595a41ca4bcc0cc99dfa 794 SMART SM00091 436 507 5.3 T 11-10-2018 IPR000014 PAS domain AMK58_01615 937c6e7068c0595a41ca4bcc0cc99dfa 794 SMART SM00091 307 377 38.0 T 11-10-2018 IPR000014 PAS domain AMK58_01615 937c6e7068c0595a41ca4bcc0cc99dfa 794 SMART SM00091 64 125 7.4 T 11-10-2018 IPR000014 PAS domain AMK58_01615 937c6e7068c0595a41ca4bcc0cc99dfa 794 SMART SM00091 188 256 6.5 T 11-10-2018 IPR000014 PAS domain AMK58_01615 937c6e7068c0595a41ca4bcc0cc99dfa 794 SUPERFAMILY SSF55785 291 361 4.01E-5 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_01615 937c6e7068c0595a41ca4bcc0cc99dfa 794 SUPERFAMILY SSF55874 627 787 6.02E-21 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_01615 937c6e7068c0595a41ca4bcc0cc99dfa 794 Gene3D G3DSA:1.10.287.130 551 636 1.3E-22 T 11-10-2018 AMK58_01615 937c6e7068c0595a41ca4bcc0cc99dfa 794 Pfam PF00512 His Kinase A (phospho-acceptor) domain 571 638 4.5E-16 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_01615 937c6e7068c0595a41ca4bcc0cc99dfa 794 SUPERFAMILY SSF55785 183 293 2.3E-6 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_01615 937c6e7068c0595a41ca4bcc0cc99dfa 794 Gene3D G3DSA:3.30.450.20 436 550 9.4E-8 T 11-10-2018 AMK58_01615 937c6e7068c0595a41ca4bcc0cc99dfa 794 Gene3D G3DSA:3.30.450.20 176 306 1.9E-8 T 11-10-2018 AMK58_01615 937c6e7068c0595a41ca4bcc0cc99dfa 794 SMART SM00388 570 638 1.3E-20 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_01615 937c6e7068c0595a41ca4bcc0cc99dfa 794 SUPERFAMILY SSF55785 53 167 8.57E-5 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_06910 ad27533b9596046859d22630abe1bfa5 425 Gene3D G3DSA:3.30.1540.10 241 337 1.2E-156 T 11-10-2018 AMK58_06910 ad27533b9596046859d22630abe1bfa5 425 Hamap MF_00742 Formyl-CoA:oxalate CoA-transferase [frc]. 1 415 66.294 T 11-10-2018 IPR017659 Formyl-CoA:oxalate CoA-transferase GO:0033608 MetaCyc: PWY-6695 AMK58_06910 ad27533b9596046859d22630abe1bfa5 425 Pfam PF02515 CoA-transferase family III 5 391 8.1E-104 T 11-10-2018 IPR003673 CoA-transferase family III GO:0003824 AMK58_06910 ad27533b9596046859d22630abe1bfa5 425 SUPERFAMILY SSF89796 3 414 8.5E-125 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily AMK58_06910 ad27533b9596046859d22630abe1bfa5 425 TIGRFAM TIGR03253 oxalate_frc: formyl-CoA transferase 3 414 1.1E-223 T 11-10-2018 IPR017659 Formyl-CoA:oxalate CoA-transferase GO:0033608 MetaCyc: PWY-6695 AMK58_06910 ad27533b9596046859d22630abe1bfa5 425 Gene3D G3DSA:3.40.50.10540 5 406 1.2E-156 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily AMK58_06735 c395cb30f10ffb539e11a8d5270d1e32 195 Pfam PF00691 OmpA family 86 181 3.1E-18 T 11-10-2018 IPR006665 OmpA-like domain AMK58_06735 c395cb30f10ffb539e11a8d5270d1e32 195 PRINTS PR01021 OMPA domain signature 132 148 4.0E-14 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMK58_06735 c395cb30f10ffb539e11a8d5270d1e32 195 PRINTS PR01021 OMPA domain signature 117 132 4.0E-14 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMK58_06735 c395cb30f10ffb539e11a8d5270d1e32 195 PRINTS PR01021 OMPA domain signature 87 109 4.0E-14 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMK58_06735 c395cb30f10ffb539e11a8d5270d1e32 195 Gene3D G3DSA:3.30.1330.60 67 186 4.3E-30 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMK58_06735 c395cb30f10ffb539e11a8d5270d1e32 195 SUPERFAMILY SSF103088 74 185 1.44E-28 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMK58_03540 817d94d3a2b6eea815a5f159dec65a3e 325 Pfam PF09084 NMT1/THI5 like 66 249 1.9E-11 T 11-10-2018 IPR015168 SsuA/THI5-like AMK58_03540 817d94d3a2b6eea815a5f159dec65a3e 325 Gene3D G3DSA:3.40.190.10 150 313 2.9E-11 T 11-10-2018 AMK58_03540 817d94d3a2b6eea815a5f159dec65a3e 325 Gene3D G3DSA:3.40.190.10 25 140 4.7E-9 T 11-10-2018 AMK58_03540 817d94d3a2b6eea815a5f159dec65a3e 325 SUPERFAMILY SSF53850 25 253 8.86E-25 T 11-10-2018 AMK58_25035 62725ca199d9acb88c56e2fdd1ae5f95 446 SUPERFAMILY SSF75304 3 445 3.27E-124 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMK58_25035 62725ca199d9acb88c56e2fdd1ae5f95 446 ProSitePatterns PS00571 Amidases signature. 152 183 - T 11-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 AMK58_25035 62725ca199d9acb88c56e2fdd1ae5f95 446 Pfam PF01425 Amidase 42 434 1.2E-92 T 11-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMK58_25035 62725ca199d9acb88c56e2fdd1ae5f95 446 Gene3D G3DSA:3.90.1300.10 5 445 7.2E-133 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMK58_10435 28b24231602264f4e72ad2fad2c51072 172 Pfam PF00466 Ribosomal protein L10 3 98 1.0E-24 T 11-10-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 AMK58_10435 28b24231602264f4e72ad2fad2c51072 172 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 1 158 25.792 T 11-10-2018 IPR022973 Ribosomal protein L10 AMK58_10435 28b24231602264f4e72ad2fad2c51072 172 ProSitePatterns PS01109 Ribosomal protein L10 signature. 6 40 - T 11-10-2018 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_10435 28b24231602264f4e72ad2fad2c51072 172 Gene3D G3DSA:3.30.70.1730 1 131 1.5E-40 T 11-10-2018 AMK58_10435 28b24231602264f4e72ad2fad2c51072 172 SUPERFAMILY SSF160369 3 168 2.09E-56 T 11-10-2018 AMK58_10325 f3f0025ff5024f41b3c779bb812a9983 180 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 2 180 43.717 T 11-10-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_10325 f3f0025ff5024f41b3c779bb812a9983 180 Pfam PF00673 ribosomal L5P family C-terminus 86 178 6.5E-43 T 11-10-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10325 f3f0025ff5024f41b3c779bb812a9983 180 SUPERFAMILY SSF55282 4 179 4.0E-79 T 11-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10325 f3f0025ff5024f41b3c779bb812a9983 180 ProSitePatterns PS00358 Ribosomal protein L5 signature. 58 74 - T 11-10-2018 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10325 f3f0025ff5024f41b3c779bb812a9983 180 Pfam PF00281 Ribosomal protein L5 25 81 3.5E-28 T 11-10-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10325 f3f0025ff5024f41b3c779bb812a9983 180 PIRSF PIRSF002161 1 180 1.6E-69 T 11-10-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10325 f3f0025ff5024f41b3c779bb812a9983 180 Gene3D G3DSA:3.30.1440.10 1 179 2.5E-81 T 11-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_12680 4e5346b73ab52d9dad8064ef6b5b1914 371 Pfam PF00535 Glycosyl transferase family 2 12 174 4.3E-33 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMK58_12680 4e5346b73ab52d9dad8064ef6b5b1914 371 SUPERFAMILY SSF53448 11 273 1.85E-38 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_12680 4e5346b73ab52d9dad8064ef6b5b1914 371 Gene3D G3DSA:3.90.550.10 2 219 5.2E-37 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_24160 345cfe5a1e67b11461c962ae1ed43579 393 Pfam PF10129 OpgC protein 2 358 2.0E-118 T 11-10-2018 IPR014550 Uncharacterised conserved protein UCP028704, OpgC AMK58_24160 345cfe5a1e67b11461c962ae1ed43579 393 PIRSF PIRSF028704 1 379 1.7E-123 T 11-10-2018 IPR014550 Uncharacterised conserved protein UCP028704, OpgC AMK58_13660 00ff323f8e0abb1d42451a091bc5a4c6 841 SUPERFAMILY SSF52540 431 742 2.34E-49 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_13660 00ff323f8e0abb1d42451a091bc5a4c6 841 SMART SM00843 774 839 5.5E-36 T 11-10-2018 IPR018541 FtsK gamma domain AMK58_13660 00ff323f8e0abb1d42451a091bc5a4c6 841 Gene3D G3DSA:1.10.10.10 778 840 1.7E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_13660 00ff323f8e0abb1d42451a091bc5a4c6 841 Pfam PF01580 FtsK/SpoIIIE family 452 671 2.2E-64 T 11-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 AMK58_13660 00ff323f8e0abb1d42451a091bc5a4c6 841 SUPERFAMILY SSF46785 774 837 3.99E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_13660 00ff323f8e0abb1d42451a091bc5a4c6 841 SMART SM00382 487 692 9.0E-5 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_13660 00ff323f8e0abb1d42451a091bc5a4c6 841 Pfam PF09397 Ftsk gamma domain 776 836 1.0E-25 T 11-10-2018 IPR018541 FtsK gamma domain AMK58_13660 00ff323f8e0abb1d42451a091bc5a4c6 841 Gene3D G3DSA:3.30.980.40 343 448 2.1E-30 T 11-10-2018 AMK58_13660 00ff323f8e0abb1d42451a091bc5a4c6 841 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 41 201 1.7E-30 T 11-10-2018 IPR025199 DNA translocase FtsK, 4TM region AMK58_13660 00ff323f8e0abb1d42451a091bc5a4c6 841 Gene3D G3DSA:3.40.50.300 449 756 6.0E-113 T 11-10-2018 AMK58_09400 cfd22840ac0ff2a389786845588f5449 446 Pfam PF02347 Glycine cleavage system P-protein 1 438 1.9E-118 T 11-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 AMK58_09400 cfd22840ac0ff2a389786845588f5449 446 Gene3D G3DSA:3.90.1150.10 72 442 6.8E-156 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_09400 cfd22840ac0ff2a389786845588f5449 446 SUPERFAMILY SSF53383 1 446 7.51E-114 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_09400 cfd22840ac0ff2a389786845588f5449 446 PIRSF PIRSF006815 1 446 6.7E-168 T 11-10-2018 IPR023010 Probable glycine dehydrogenase (decarboxylating) subunit 1 GO:0004375|GO:0009116 KEGG: 00260+1.4.4.2 AMK58_09400 cfd22840ac0ff2a389786845588f5449 446 Hamap MF_00712 Probable glycine dehydrogenase (decarboxylating) subunit 1 [gcvPA]. 1 445 45.272 T 11-10-2018 IPR023010 Probable glycine dehydrogenase (decarboxylating) subunit 1 GO:0004375|GO:0009116 KEGG: 00260+1.4.4.2 AMK58_09400 cfd22840ac0ff2a389786845588f5449 446 Gene3D G3DSA:3.40.640.10 83 347 6.8E-156 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_26445 c1c96383346e01611071239a08f4f10c 305 ProSitePatterns PS01006 Formate and nitrite transporters signature 2. 190 200 - T 11-10-2018 IPR024002 Formate/nitrite transporter, conserved site AMK58_26445 c1c96383346e01611071239a08f4f10c 305 Pfam PF01226 Formate/nitrite transporter 36 294 1.0E-71 T 11-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 AMK58_26445 c1c96383346e01611071239a08f4f10c 305 Gene3D G3DSA:1.20.1080.10 24 286 2.4E-84 T 11-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 AMK58_17330 47845ee8663ca08b631cea01fb7f57dc 240 Gene3D G3DSA:3.30.1360.40 4 79 7.7E-22 T 11-10-2018 AMK58_17330 47845ee8663ca08b631cea01fb7f57dc 240 SMART SM00796 3 203 7.0E-84 T 11-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D AMK58_17330 47845ee8663ca08b631cea01fb7f57dc 240 TIGRFAM TIGR00370 TIGR00370: sensor histidine kinase inhibitor, KipI family 9 211 2.0E-54 T 11-10-2018 IPR010016 KipI family KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 AMK58_17330 47845ee8663ca08b631cea01fb7f57dc 240 SUPERFAMILY SSF50891 89 219 1.86E-45 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily AMK58_17330 47845ee8663ca08b631cea01fb7f57dc 240 SUPERFAMILY SSF160467 4 94 6.67E-21 T 11-10-2018 AMK58_17330 47845ee8663ca08b631cea01fb7f57dc 240 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 3 203 7.5E-72 T 11-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D AMK58_17330 47845ee8663ca08b631cea01fb7f57dc 240 Gene3D G3DSA:2.40.100.10 89 227 2.6E-54 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily AMK58_14450 495d66d66c34251bf44156471f8e7db7 429 Pfam PF00579 tRNA synthetases class I (W and Y) 39 334 1.7E-73 T 11-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMK58_14450 495d66d66c34251bf44156471f8e7db7 429 Hamap MF_02006 Tyrosine--tRNA ligase [tyrS]. 12 428 42.34 T 11-10-2018 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0004831 KEGG: 00970+6.1.1.1 AMK58_14450 495d66d66c34251bf44156471f8e7db7 429 Gene3D G3DSA:1.10.240.10 236 329 4.9E-29 T 11-10-2018 AMK58_14450 495d66d66c34251bf44156471f8e7db7 429 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 13 402 1.4E-103 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AMK58_14450 495d66d66c34251bf44156471f8e7db7 429 SUPERFAMILY SSF55174 317 426 1.01E-14 T 11-10-2018 AMK58_14450 495d66d66c34251bf44156471f8e7db7 429 SUPERFAMILY SSF52374 13 334 4.88E-93 T 11-10-2018 AMK58_14450 495d66d66c34251bf44156471f8e7db7 429 Gene3D G3DSA:3.40.50.620 2 235 2.3E-85 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_14450 495d66d66c34251bf44156471f8e7db7 429 Gene3D G3DSA:3.10.290.10 330 429 1.8E-16 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AMK58_14450 495d66d66c34251bf44156471f8e7db7 429 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 229 241 7.5E-27 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AMK58_14450 495d66d66c34251bf44156471f8e7db7 429 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 196 218 7.5E-27 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AMK58_14450 495d66d66c34251bf44156471f8e7db7 429 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 175 190 7.5E-27 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AMK58_14450 495d66d66c34251bf44156471f8e7db7 429 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 54 76 7.5E-27 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AMK58_14450 495d66d66c34251bf44156471f8e7db7 429 Pfam PF01479 S4 domain 357 399 3.6E-9 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_00465 8f1c9c5c774a237371b970b6fa631a64 224 ProDom PD111165 RP434 8 217 1.0E-10 T 11-10-2018 AMK58_00465 8f1c9c5c774a237371b970b6fa631a64 224 Gene3D G3DSA:3.10.450.240 71 224 1.7E-42 T 11-10-2018 AMK58_00465 8f1c9c5c774a237371b970b6fa631a64 224 SUPERFAMILY SSF54427 19 221 1.31E-52 T 11-10-2018 IPR032710 NTF2-like domain superfamily AMK58_00465 8f1c9c5c774a237371b970b6fa631a64 224 PIRSF PIRSF031890 4 224 2.2E-75 T 11-10-2018 IPR016985 Uncharacterised conserved protein UCP031890, Tim44-related AMK58_00465 8f1c9c5c774a237371b970b6fa631a64 224 Pfam PF04280 Tim44-like domain 77 220 1.3E-48 T 11-10-2018 IPR007379 Tim44-like domain AMK58_00465 8f1c9c5c774a237371b970b6fa631a64 224 SMART SM00978 76 222 8.2E-52 T 11-10-2018 IPR007379 Tim44-like domain AMK58_02805 a17c11392d4734472434c4b19c39e4e2 221 SUPERFAMILY SSF48613 3 216 1.93E-68 T 11-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 AMK58_02805 a17c11392d4734472434c4b19c39e4e2 221 Pfam PF03070 TENA/THI-4/PQQC family 14 218 5.1E-44 T 11-10-2018 IPR004305 Thiaminase-2/PQQC AMK58_02805 a17c11392d4734472434c4b19c39e4e2 221 TIGRFAM TIGR04306 salvage_TenA: thiaminase II 12 218 6.2E-44 T 11-10-2018 IPR027574 Thiaminase II GO:0006772|GO:0050334 KEGG: 00730+3.5.99.2|MetaCyc: PWY-6899|MetaCyc: PWY-7356 AMK58_02805 a17c11392d4734472434c4b19c39e4e2 221 Gene3D G3DSA:1.20.910.10 2 220 6.0E-68 T 11-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 AMK58_28475 2423c6af849fce0985959b69d7eadc48 546 SUPERFAMILY SSF51004 120 546 3.27E-122 T 11-10-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily AMK58_28475 2423c6af849fce0985959b69d7eadc48 546 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 41 111 1.2E-11 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_28475 2423c6af849fce0985959b69d7eadc48 546 Gene3D G3DSA:1.10.760.10 23 119 1.1E-32 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_28475 2423c6af849fce0985959b69d7eadc48 546 SUPERFAMILY SSF46626 1 133 7.16E-21 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_28475 2423c6af849fce0985959b69d7eadc48 546 Pfam PF02239 Cytochrome D1 heme domain 148 541 2.7E-154 T 11-10-2018 AMK58_28475 2423c6af849fce0985959b69d7eadc48 546 Gene3D G3DSA:2.140.10.20 120 546 2.7E-197 T 11-10-2018 IPR003143 Cytochrome cd1-nitrite reductase, C-terminal domain superfamily AMK58_18795 74765d0c25ec8ef46769cce389121340 168 Gene3D G3DSA:3.30.70.1070 72 153 1.7E-8 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 AMK58_18795 74765d0c25ec8ef46769cce389121340 168 Pfam PF05036 Sporulation related domain 78 152 2.1E-12 T 11-10-2018 IPR007730 Sporulation-like domain GO:0042834 AMK58_18795 74765d0c25ec8ef46769cce389121340 168 SUPERFAMILY SSF110997 78 152 1.12E-11 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 AMK58_22390 de5441cd9c2a885e6c097c637bd9ef3c 271 PIRSF PIRSF006648 3 259 4.8E-35 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMK58_22390 de5441cd9c2a885e6c097c637bd9ef3c 271 TIGRFAM TIGR03861 phenyl_ABC_PedC: alcohol ABC transporter, permease protein 7 258 1.5E-121 T 11-10-2018 IPR022403 Alcohol ABC transporter, permease protein AMK58_22390 de5441cd9c2a885e6c097c637bd9ef3c 271 PRINTS PR00164 ABC-2 type transport system membrane protein signature 28 49 4.6E-8 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMK58_22390 de5441cd9c2a885e6c097c637bd9ef3c 271 PRINTS PR00164 ABC-2 type transport system membrane protein signature 145 169 4.6E-8 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMK58_22390 de5441cd9c2a885e6c097c637bd9ef3c 271 PRINTS PR00164 ABC-2 type transport system membrane protein signature 182 201 4.6E-8 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMK58_22390 de5441cd9c2a885e6c097c637bd9ef3c 271 Pfam PF01061 ABC-2 type transporter 10 228 6.3E-36 T 11-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 AMK58_21420 fff3e7663175b9fbb46d919b9e231883 111 Pfam PF03992 Antibiotic biosynthesis monooxygenase 15 85 1.5E-13 T 11-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain AMK58_21420 fff3e7663175b9fbb46d919b9e231883 111 Gene3D G3DSA:3.30.70.100 7 108 1.6E-23 T 11-10-2018 AMK58_21420 fff3e7663175b9fbb46d919b9e231883 111 SUPERFAMILY SSF54909 7 105 1.07E-24 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel AMK58_05795 1389754b830ae6788b4ce287f829653c 122 SUPERFAMILY SSF46946 2 121 6.39E-47 T 11-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 AMK58_05795 1389754b830ae6788b4ce287f829653c 122 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 119 27.526 T 11-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_05795 1389754b830ae6788b4ce287f829653c 122 PIRSF PIRSF002134 1 122 2.9E-45 T 11-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_05795 1389754b830ae6788b4ce287f829653c 122 Gene3D G3DSA:4.10.910.10 73 119 7.9E-27 T 11-10-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_05795 1389754b830ae6788b4ce287f829653c 122 Pfam PF00416 Ribosomal protein S13/S18 3 109 6.5E-33 T 11-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_05795 1389754b830ae6788b4ce287f829653c 122 ProSitePatterns PS00646 Ribosomal protein S13 signature. 88 101 - T 11-10-2018 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_05795 1389754b830ae6788b4ce287f829653c 122 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 115 1.8E-54 T 11-10-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_05795 1389754b830ae6788b4ce287f829653c 122 Gene3D G3DSA:1.10.8.50 1 72 1.5E-29 T 11-10-2018 AMK58_06395 58b78e6d0aaada09cef3bddbc1ff4a76 196 Gene3D G3DSA:3.40.50.880 1 191 1.2E-62 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_06395 58b78e6d0aaada09cef3bddbc1ff4a76 196 SUPERFAMILY SSF52317 1 190 3.91E-58 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_06395 58b78e6d0aaada09cef3bddbc1ff4a76 196 Pfam PF00117 Glutamine amidotransferase class-I 3 186 6.0E-56 T 11-10-2018 IPR017926 Glutamine amidotransferase AMK58_06395 58b78e6d0aaada09cef3bddbc1ff4a76 196 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 44 58 1.9E-8 T 11-10-2018 AMK58_06395 58b78e6d0aaada09cef3bddbc1ff4a76 196 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 75 91 1.9E-8 T 11-10-2018 AMK58_06395 58b78e6d0aaada09cef3bddbc1ff4a76 196 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 1.4E-13 T 11-10-2018 AMK58_06395 58b78e6d0aaada09cef3bddbc1ff4a76 196 PRINTS PR00096 Glutamine amidotransferase superfamily signature 165 178 1.4E-13 T 11-10-2018 AMK58_06395 58b78e6d0aaada09cef3bddbc1ff4a76 196 PRINTS PR00096 Glutamine amidotransferase superfamily signature 75 86 1.4E-13 T 11-10-2018 AMK58_06395 58b78e6d0aaada09cef3bddbc1ff4a76 196 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 187 3.5E-69 T 11-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMK58_06395 58b78e6d0aaada09cef3bddbc1ff4a76 196 PRINTS PR00097 Anthranilate synthase component II signature 120 132 6.8E-34 T 11-10-2018 AMK58_06395 58b78e6d0aaada09cef3bddbc1ff4a76 196 PRINTS PR00097 Anthranilate synthase component II signature 100 108 6.8E-34 T 11-10-2018 AMK58_06395 58b78e6d0aaada09cef3bddbc1ff4a76 196 PRINTS PR00097 Anthranilate synthase component II signature 2 16 6.8E-34 T 11-10-2018 AMK58_06395 58b78e6d0aaada09cef3bddbc1ff4a76 196 PRINTS PR00097 Anthranilate synthase component II signature 47 56 6.8E-34 T 11-10-2018 AMK58_06395 58b78e6d0aaada09cef3bddbc1ff4a76 196 PRINTS PR00097 Anthranilate synthase component II signature 165 178 6.8E-34 T 11-10-2018 AMK58_06395 58b78e6d0aaada09cef3bddbc1ff4a76 196 PRINTS PR00097 Anthranilate synthase component II signature 75 86 6.8E-34 T 11-10-2018 AMK58_15735 16ca818c94aa7acad3c754a18bfc1988 133 Gene3D G3DSA:3.10.129.10 6 128 4.0E-28 T 11-10-2018 AMK58_15735 16ca818c94aa7acad3c754a18bfc1988 133 Pfam PF01575 MaoC like domain 13 101 7.2E-18 T 11-10-2018 IPR002539 MaoC-like dehydratase domain AMK58_15735 16ca818c94aa7acad3c754a18bfc1988 133 SUPERFAMILY SSF54637 11 123 5.73E-27 T 11-10-2018 IPR029069 HotDog domain superfamily AMK58_11690 15c4d1a208efcf7e85f59958c8e42ae9 426 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 14 425 40.461 T 11-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AMK58_11690 15c4d1a208efcf7e85f59958c8e42ae9 426 Gene3D G3DSA:3.40.605.10 22 422 1.3E-159 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMK58_11690 15c4d1a208efcf7e85f59958c8e42ae9 426 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 332 353 - T 11-10-2018 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AMK58_11690 15c4d1a208efcf7e85f59958c8e42ae9 426 PIRSF PIRSF000151 7 426 8.4E-171 T 11-10-2018 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 AMK58_11690 15c4d1a208efcf7e85f59958c8e42ae9 426 SUPERFAMILY SSF53720 14 425 1.7E-118 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMK58_11690 15c4d1a208efcf7e85f59958c8e42ae9 426 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 22 415 9.1E-140 T 11-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AMK58_11690 15c4d1a208efcf7e85f59958c8e42ae9 426 Pfam PF00171 Aldehyde dehydrogenase family 8 289 1.0E-18 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMK58_11690 15c4d1a208efcf7e85f59958c8e42ae9 426 Gene3D G3DSA:3.40.309.10 235 383 1.3E-159 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMK58_10270 7552202dfe3cc229b2355cb42ed6f03e 284 Pfam PF00892 EamA-like transporter family 2 133 3.3E-13 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_10270 7552202dfe3cc229b2355cb42ed6f03e 284 Pfam PF00892 EamA-like transporter family 146 279 5.8E-19 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_10270 7552202dfe3cc229b2355cb42ed6f03e 284 SUPERFAMILY SSF103481 31 137 5.62E-15 T 11-10-2018 AMK58_10270 7552202dfe3cc229b2355cb42ed6f03e 284 SUPERFAMILY SSF103481 183 283 1.57E-12 T 11-10-2018 AMK58_18390 75f3b340dfd0313072f2cca34e3b5ab5 299 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 251 277 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_18390 75f3b340dfd0313072f2cca34e3b5ab5 299 Pfam PF04542 Sigma-70 region 2 48 116 5.1E-17 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMK58_18390 75f3b340dfd0313072f2cca34e3b5ab5 299 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 11 282 1.3E-97 T 11-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMK58_18390 75f3b340dfd0313072f2cca34e3b5ab5 299 PIRSF PIRSF000770 1 292 5.7E-33 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_18390 75f3b340dfd0313072f2cca34e3b5ab5 299 SUPERFAMILY SSF88659 190 282 1.4E-17 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMK58_18390 75f3b340dfd0313072f2cca34e3b5ab5 299 Gene3D G3DSA:1.20.140.160 134 282 7.7E-13 T 11-10-2018 AMK58_18390 75f3b340dfd0313072f2cca34e3b5ab5 299 Gene3D G3DSA:1.10.601.10 11 115 3.1E-33 T 11-10-2018 AMK58_18390 75f3b340dfd0313072f2cca34e3b5ab5 299 SUPERFAMILY SSF88946 6 116 3.61E-39 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMK58_18390 75f3b340dfd0313072f2cca34e3b5ab5 299 PRINTS PR00046 Major sigma-70 factor signature 72 85 5.3E-21 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_18390 75f3b340dfd0313072f2cca34e3b5ab5 299 PRINTS PR00046 Major sigma-70 factor signature 251 266 5.3E-21 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_18390 75f3b340dfd0313072f2cca34e3b5ab5 299 PRINTS PR00046 Major sigma-70 factor signature 232 244 5.3E-21 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_18390 75f3b340dfd0313072f2cca34e3b5ab5 299 PRINTS PR00046 Major sigma-70 factor signature 266 277 5.3E-21 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_18390 75f3b340dfd0313072f2cca34e3b5ab5 299 PRINTS PR00046 Major sigma-70 factor signature 96 104 5.3E-21 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_18390 75f3b340dfd0313072f2cca34e3b5ab5 299 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 44 280 4.8E-27 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMK58_18390 75f3b340dfd0313072f2cca34e3b5ab5 299 Pfam PF04545 Sigma-70, region 4 229 279 1.5E-16 T 11-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 AMK58_18390 75f3b340dfd0313072f2cca34e3b5ab5 299 Pfam PF00140 Sigma-70 factor, region 1.2 10 38 4.4E-6 T 11-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMK58_18985 da651b8d969bf7516f506eabe1b8565b 242 TIGRFAM TIGR00035 asp_race: aspartate racemase 12 242 1.5E-52 T 11-10-2018 IPR004380 Aspartate racemase GO:0006520|GO:0016855 AMK58_18985 da651b8d969bf7516f506eabe1b8565b 242 SUPERFAMILY SSF53681 128 240 1.54E-22 T 11-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMK58_18985 da651b8d969bf7516f506eabe1b8565b 242 Pfam PF01177 Asp/Glu/Hydantoin racemase 17 235 1.1E-44 T 11-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMK58_18985 da651b8d969bf7516f506eabe1b8565b 242 SUPERFAMILY SSF53681 12 126 3.71E-24 T 11-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMK58_18985 da651b8d969bf7516f506eabe1b8565b 242 Gene3D G3DSA:3.40.50.1860 114 226 1.3E-65 T 11-10-2018 AMK58_18985 da651b8d969bf7516f506eabe1b8565b 242 Gene3D G3DSA:3.40.50.1860 12 232 1.3E-65 T 11-10-2018 AMK58_08395 ea3db5f67cf284deea9514c9bc553d97 294 TIGRFAM TIGR01694 MTAP: methylthioadenosine phosphorylase 10 246 1.0E-94 T 11-10-2018 IPR010044 Methylthioadenosine phosphorylase (MTAP) GO:0017061 Reactome: R-HSA-1237112|Reactome: R-HSA-8950505 AMK58_08395 ea3db5f67cf284deea9514c9bc553d97 294 SUPERFAMILY SSF53167 8 275 2.23E-91 T 11-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 AMK58_08395 ea3db5f67cf284deea9514c9bc553d97 294 ProSitePatterns PS01240 Purine and other phosphorylases family 2 signature. 56 96 - T 11-10-2018 IPR018099 Purine phosphorylase, family 2, conserved site GO:0016763 AMK58_08395 ea3db5f67cf284deea9514c9bc553d97 294 Gene3D G3DSA:3.40.50.1580 1 290 1.1E-101 T 11-10-2018 AMK58_08395 ea3db5f67cf284deea9514c9bc553d97 294 Pfam PF01048 Phosphorylase superfamily 10 244 4.1E-44 T 11-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AMK58_08395 ea3db5f67cf284deea9514c9bc553d97 294 Hamap MF_01963 S-methyl-5'-thioadenosine phosphorylase [mtnP]. 8 275 41.775 T 11-10-2018 IPR010044 Methylthioadenosine phosphorylase (MTAP) GO:0017061 Reactome: R-HSA-1237112|Reactome: R-HSA-8950505 AMK58_18110 6af5375fd7f0e4e659e61f8b60c13dc4 136 Gene3D G3DSA:1.20.120.50 2 136 1.1E-41 T 11-10-2018 IPR035938 Hemerythrin-like superfamily AMK58_18110 6af5375fd7f0e4e659e61f8b60c13dc4 136 ProSitePatterns PS00550 Hemerythrin family signature. 58 81 - T 11-10-2018 IPR016131 Haemerythrin, iron-binding site GO:0046872 AMK58_18110 6af5375fd7f0e4e659e61f8b60c13dc4 136 SUPERFAMILY SSF47188 1 130 1.96E-35 T 11-10-2018 IPR035938 Hemerythrin-like superfamily AMK58_18110 6af5375fd7f0e4e659e61f8b60c13dc4 136 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 6 130 1.3E-39 T 11-10-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 AMK58_18110 6af5375fd7f0e4e659e61f8b60c13dc4 136 Pfam PF01814 Hemerythrin HHE cation binding domain 13 130 3.3E-16 T 11-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 AMK58_05220 e30325f655fe388fc08a993bde09bd5b 551 Gene3D G3DSA:3.30.300.310 446 548 7.8E-36 T 11-10-2018 AMK58_05220 e30325f655fe388fc08a993bde09bd5b 551 SUPERFAMILY SSF56801 18 545 3.27E-141 T 11-10-2018 AMK58_05220 e30325f655fe388fc08a993bde09bd5b 551 ProSitePatterns PS00455 Putative AMP-binding domain signature. 193 204 - T 11-10-2018 IPR020845 AMP-binding, conserved site AMK58_05220 e30325f655fe388fc08a993bde09bd5b 551 Pfam PF13193 AMP-binding enzyme C-terminal domain 459 533 6.8E-24 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMK58_05220 e30325f655fe388fc08a993bde09bd5b 551 Gene3D G3DSA:3.40.50.12780 11 445 4.5E-107 T 11-10-2018 AMK58_05220 e30325f655fe388fc08a993bde09bd5b 551 Pfam PF00501 AMP-binding enzyme 30 450 2.8E-95 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMK58_27200 237fef25492e0bab63ba932ddb92f522 275 Pfam PF00106 short chain dehydrogenase 10 199 1.4E-32 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_27200 237fef25492e0bab63ba932ddb92f522 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 92 103 9.1E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_27200 237fef25492e0bab63ba932ddb92f522 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 9.1E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_27200 237fef25492e0bab63ba932ddb92f522 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 186 9.1E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_27200 237fef25492e0bab63ba932ddb92f522 275 Gene3D G3DSA:3.40.50.720 1 275 3.0E-74 T 11-10-2018 AMK58_27200 237fef25492e0bab63ba932ddb92f522 275 SUPERFAMILY SSF51735 6 246 7.55E-52 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_10525 f19c7106c0fcda4723385b4a01284b3d 248 Gene3D G3DSA:3.40.50.300 4 245 1.3E-61 T 11-10-2018 AMK58_10525 f19c7106c0fcda4723385b4a01284b3d 248 Pfam PF00005 ABC transporter 21 174 1.8E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_10525 f19c7106c0fcda4723385b4a01284b3d 248 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_10525 f19c7106c0fcda4723385b4a01284b3d 248 SUPERFAMILY SSF52540 4 244 6.45E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_10525 f19c7106c0fcda4723385b4a01284b3d 248 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 223 245 8.2E-11 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AMK58_10525 f19c7106c0fcda4723385b4a01284b3d 248 SMART SM00382 29 223 3.4E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_18315 b61a0e4e56b3527cc33937aba1ba31ab 77 SUPERFAMILY SSF47336 12 69 1.58E-5 T 11-10-2018 IPR036736 ACP-like superfamily AMK58_18315 b61a0e4e56b3527cc33937aba1ba31ab 77 Gene3D G3DSA:1.10.1200.10 7 76 9.7E-10 T 11-10-2018 IPR036736 ACP-like superfamily AMK58_01595 0905490bf3bbc72d609d6e432e48a053 190 Pfam PF07813 LTXXQ motif family protein 55 147 3.0E-21 T 11-10-2018 IPR012899 LTXXQ motif family protein GO:0042597 AMK58_00905 f3d0db9cada02d235b398fe41ae6350b 86 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 85 1.7E-24 T 11-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_00905 f3d0db9cada02d235b398fe41ae6350b 86 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 17.412 T 11-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_00905 f3d0db9cada02d235b398fe41ae6350b 86 Pfam PF01649 Ribosomal protein S20 2 84 5.8E-27 T 11-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_00905 f3d0db9cada02d235b398fe41ae6350b 86 Gene3D G3DSA:1.20.58.110 1 86 3.1E-27 T 11-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_00905 f3d0db9cada02d235b398fe41ae6350b 86 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 12 86 4.0E-19 T 11-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_00905 f3d0db9cada02d235b398fe41ae6350b 86 SUPERFAMILY SSF46992 3 86 2.49E-29 T 11-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_27705 ef79a94c55d80986a54a8dc573d93c40 351 SMART SM00421 283 340 1.1E-6 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_27705 ef79a94c55d80986a54a8dc573d93c40 351 SUPERFAMILY SSF46894 275 340 1.84E-11 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMK58_27705 ef79a94c55d80986a54a8dc573d93c40 351 Gene3D G3DSA:1.10.10.10 270 343 1.5E-10 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_12375 e2b3c6f238e1029e3b2fb6944cb2cd75 382 SUPERFAMILY SSF53756 12 349 1.1E-31 T 11-10-2018 AMK58_12375 e2b3c6f238e1029e3b2fb6944cb2cd75 382 Pfam PF13692 Glycosyl transferases group 1 188 321 2.4E-15 T 11-10-2018 AMK58_12375 e2b3c6f238e1029e3b2fb6944cb2cd75 382 Gene3D G3DSA:3.40.50.2000 150 171 4.2E-24 T 11-10-2018 AMK58_12375 e2b3c6f238e1029e3b2fb6944cb2cd75 382 Gene3D G3DSA:3.40.50.2000 172 345 4.2E-24 T 11-10-2018 AMK58_10835 31adfc61011ea992b78cfab42aaf259f 302 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 23 300 3.3E-56 T 11-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 AMK58_10835 31adfc61011ea992b78cfab42aaf259f 302 PIRSF PIRSF026649 13 302 1.3E-61 T 11-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 AMK58_14425 b635762f31715e112134707885111e4a 213 Gene3D G3DSA:3.40.30.10 8 202 6.7E-46 T 11-10-2018 AMK58_14425 b635762f31715e112134707885111e4a 213 Gene3D G3DSA:1.20.1050.10 88 198 6.7E-46 T 11-10-2018 AMK58_14425 b635762f31715e112134707885111e4a 213 SUPERFAMILY SSF52833 8 91 2.47E-13 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_14425 b635762f31715e112134707885111e4a 213 SUPERFAMILY SSF47616 87 206 6.25E-19 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMK58_14425 b635762f31715e112134707885111e4a 213 Pfam PF13417 Glutathione S-transferase, N-terminal domain 23 84 2.8E-9 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMK58_24770 892b6a49dc5eec6623081c807e5f02ef 312 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 106 266 4.4E-28 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_24770 892b6a49dc5eec6623081c807e5f02ef 312 SUPERFAMILY SSF161098 84 267 3.92E-42 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_24770 892b6a49dc5eec6623081c807e5f02ef 312 Gene3D G3DSA:1.10.3720.10 82 270 2.4E-35 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_14250 0d5c09c9ddf3732d2f7049a1a4d8c86f 484 Gene3D G3DSA:1.20.1250.20 275 468 6.3E-21 T 11-10-2018 AMK58_14250 0d5c09c9ddf3732d2f7049a1a4d8c86f 484 PRINTS PR01036 Tetracycline resistance protein TetB signature 318 342 9.2E-8 T 11-10-2018 AMK58_14250 0d5c09c9ddf3732d2f7049a1a4d8c86f 484 PRINTS PR01036 Tetracycline resistance protein TetB signature 38 62 9.2E-8 T 11-10-2018 AMK58_14250 0d5c09c9ddf3732d2f7049a1a4d8c86f 484 PRINTS PR01036 Tetracycline resistance protein TetB signature 129 149 9.2E-8 T 11-10-2018 AMK58_14250 0d5c09c9ddf3732d2f7049a1a4d8c86f 484 PRINTS PR01036 Tetracycline resistance protein TetB signature 159 183 9.2E-8 T 11-10-2018 AMK58_14250 0d5c09c9ddf3732d2f7049a1a4d8c86f 484 Gene3D G3DSA:1.20.1720.10 37 243 1.7E-37 T 11-10-2018 AMK58_14250 0d5c09c9ddf3732d2f7049a1a4d8c86f 484 SUPERFAMILY SSF103473 10 466 1.16E-64 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_14250 0d5c09c9ddf3732d2f7049a1a4d8c86f 484 Pfam PF07690 Major Facilitator Superfamily 40 425 6.4E-46 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMK58_25480 0d9f680683750ddba6feeb5c56babd68 160 SMART SM00347 29 130 3.0E-7 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_25480 0d9f680683750ddba6feeb5c56babd68 160 Gene3D G3DSA:1.10.10.10 1 146 2.1E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_25480 0d9f680683750ddba6feeb5c56babd68 160 Pfam PF12802 MarR family 35 94 1.0E-13 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_25480 0d9f680683750ddba6feeb5c56babd68 160 SUPERFAMILY SSF46785 11 145 1.07E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_08680 21e8d31761135da308eb73ba713db153 97 SUPERFAMILY SSF57802 51 96 7.07E-14 T 11-10-2018 AMK58_08680 21e8d31761135da308eb73ba713db153 97 ProSitePatterns PS00202 Rubredoxin signature. 76 86 - T 11-10-2018 IPR018527 Rubredoxin, iron-binding site GO:0046872 AMK58_08680 21e8d31761135da308eb73ba713db153 97 Pfam PF00301 Rubredoxin 51 92 3.9E-14 T 11-10-2018 IPR024935 Rubredoxin domain GO:0005506 AMK58_08680 21e8d31761135da308eb73ba713db153 97 Gene3D G3DSA:2.20.28.10 42 96 6.5E-20 T 11-10-2018 AMK58_17975 af270e9610587cf955d6fae5275a526e 315 SUPERFAMILY SSF47616 166 311 4.59E-36 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMK58_17975 af270e9610587cf955d6fae5275a526e 315 PIRSF PIRSF015753 5 312 3.2E-133 T 11-10-2018 IPR016639 Glutathione S-transferase Omega/GSH GO:0004364 AMK58_17975 af270e9610587cf955d6fae5275a526e 315 SUPERFAMILY SSF52833 31 150 4.75E-17 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_17975 af270e9610587cf955d6fae5275a526e 315 Pfam PF13409 Glutathione S-transferase, N-terminal domain 56 146 1.2E-23 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMK58_17975 af270e9610587cf955d6fae5275a526e 315 Gene3D G3DSA:1.20.1050.10 169 315 2.7E-70 T 11-10-2018 AMK58_17975 af270e9610587cf955d6fae5275a526e 315 Pfam PF13410 Glutathione S-transferase, C-terminal domain 194 263 3.5E-12 T 11-10-2018 AMK58_17975 af270e9610587cf955d6fae5275a526e 315 Gene3D G3DSA:3.40.30.130 1 168 4.1E-70 T 11-10-2018 AMK58_20835 4b3f700f16526fc29335e7b715b679fa 309 SUPERFAMILY SSF53807 31 294 5.1E-61 T 11-10-2018 AMK58_20835 4b3f700f16526fc29335e7b715b679fa 309 Gene3D G3DSA:3.40.50.1980 43 296 3.7E-92 T 11-10-2018 AMK58_20835 4b3f700f16526fc29335e7b715b679fa 309 Pfam PF01497 Periplasmic binding protein 56 279 5.6E-25 T 11-10-2018 IPR002491 ABC transporter periplasmic binding domain AMK58_20835 4b3f700f16526fc29335e7b715b679fa 309 Gene3D G3DSA:3.40.50.12260 177 281 3.7E-92 T 11-10-2018 AMK58_02920 12ba0edb9f92b70cf0526af9607b98fa 356 SUPERFAMILY SSF46689 24 133 8.42E-12 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_02920 12ba0edb9f92b70cf0526af9607b98fa 356 SUPERFAMILY SSF53098 204 332 9.29E-6 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMK58_02920 12ba0edb9f92b70cf0526af9607b98fa 356 Pfam PF13384 Homeodomain-like domain 29 76 3.2E-11 T 11-10-2018 AMK58_02920 12ba0edb9f92b70cf0526af9607b98fa 356 Pfam PF13358 DDE superfamily endonuclease 172 318 4.0E-19 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain AMK58_12135 90b11245a79328c951eefc0209648e73 245 SUPERFAMILY SSF51735 5 244 2.72E-66 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_12135 90b11245a79328c951eefc0209648e73 245 Gene3D G3DSA:3.40.50.720 4 244 1.0E-71 T 11-10-2018 AMK58_12135 90b11245a79328c951eefc0209648e73 245 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 243 6.9E-48 T 11-10-2018 AMK58_12135 90b11245a79328c951eefc0209648e73 245 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMK58_12135 90b11245a79328c951eefc0209648e73 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 7.9E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_12135 90b11245a79328c951eefc0209648e73 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 7.9E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_12135 90b11245a79328c951eefc0209648e73 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 7.9E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_12135 90b11245a79328c951eefc0209648e73 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 1.2E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_12135 90b11245a79328c951eefc0209648e73 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 1.2E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_12135 90b11245a79328c951eefc0209648e73 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 1.2E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_12135 90b11245a79328c951eefc0209648e73 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 1.2E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_12135 90b11245a79328c951eefc0209648e73 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 1.2E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_12135 90b11245a79328c951eefc0209648e73 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 1.2E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_23190 535e52b066c0f3b379268ce17caff70b 268 Gene3D G3DSA:3.40.50.300 1 267 4.0E-63 T 11-10-2018 AMK58_23190 535e52b066c0f3b379268ce17caff70b 268 SMART SM00382 26 236 5.2E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_23190 535e52b066c0f3b379268ce17caff70b 268 SUPERFAMILY SSF52540 2 251 6.07E-66 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_23190 535e52b066c0f3b379268ce17caff70b 268 Pfam PF00005 ABC transporter 17 179 1.2E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_23190 535e52b066c0f3b379268ce17caff70b 268 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 228 250 5.3E-12 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AMK58_09820 44f4af059de4ddf11cf0c08fdb78b304 159 Pfam PF00583 Acetyltransferase (GNAT) family 48 113 6.2E-8 T 11-10-2018 IPR000182 GNAT domain AMK58_09820 44f4af059de4ddf11cf0c08fdb78b304 159 SUPERFAMILY SSF55729 13 118 2.3E-15 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_09820 44f4af059de4ddf11cf0c08fdb78b304 159 Gene3D G3DSA:3.40.630.30 9 135 1.8E-18 T 11-10-2018 AMK58_08300 84ca2b920ee8d0182648829942b0edcc 374 SUPERFAMILY SSF55821 3 209 3.66E-86 T 11-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily AMK58_08300 84ca2b920ee8d0182648829942b0edcc 374 PIRSF PIRSF001259 8 373 3.5E-125 T 11-10-2018 AMK58_08300 84ca2b920ee8d0182648829942b0edcc 374 SUPERFAMILY SSF142695 211 370 9.02E-42 T 11-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AMK58_08300 84ca2b920ee8d0182648829942b0edcc 374 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 7 209 38.265 T 11-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMK58_08300 84ca2b920ee8d0182648829942b0edcc 374 Gene3D G3DSA:3.40.50.10990 213 370 4.1E-30 T 11-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AMK58_08300 84ca2b920ee8d0182648829942b0edcc 374 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 13 205 7.2E-72 T 11-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMK58_08300 84ca2b920ee8d0182648829942b0edcc 374 Pfam PF00925 GTP cyclohydrolase II 217 365 6.6E-33 T 11-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AMK58_08300 84ca2b920ee8d0182648829942b0edcc 374 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 13 204 6.4E-83 T 11-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMK58_08300 84ca2b920ee8d0182648829942b0edcc 374 Gene3D G3DSA:3.90.870.10 1 212 9.1E-87 T 11-10-2018 AMK58_05890 88b384de677d50c866e6843a6feee763 520 SMART SM00382 37 229 3.5E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_05890 88b384de677d50c866e6843a6feee763 520 Gene3D G3DSA:3.40.50.300 261 498 1.3E-33 T 11-10-2018 AMK58_05890 88b384de677d50c866e6843a6feee763 520 Pfam PF00005 ABC transporter 278 435 4.3E-10 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_05890 88b384de677d50c866e6843a6feee763 520 SUPERFAMILY SSF52540 12 229 1.49E-64 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_05890 88b384de677d50c866e6843a6feee763 520 Gene3D G3DSA:3.40.50.300 6 242 5.4E-63 T 11-10-2018 AMK58_05890 88b384de677d50c866e6843a6feee763 520 SUPERFAMILY SSF52540 258 491 5.79E-35 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_05890 88b384de677d50c866e6843a6feee763 520 Pfam PF00005 ABC transporter 29 173 2.2E-35 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_05890 88b384de677d50c866e6843a6feee763 520 ProSitePatterns PS00211 ABC transporters family signature. 408 422 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_05890 88b384de677d50c866e6843a6feee763 520 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_12120 a1db936f9770a3a18a4348b6d013fcc4 404 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 245 254 - T 11-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 AMK58_12120 a1db936f9770a3a18a4348b6d013fcc4 404 Pfam PF00155 Aminotransferase class I and II 47 391 1.8E-80 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMK58_12120 a1db936f9770a3a18a4348b6d013fcc4 404 Gene3D G3DSA:3.40.640.10 63 298 4.3E-169 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_12120 a1db936f9770a3a18a4348b6d013fcc4 404 TIGRFAM TIGR01821 5aminolev_synth: 5-aminolevulinic acid synthase 1 402 1.2E-203 T 11-10-2018 IPR010961 Tetrapyrrole biosynthesis, 5-aminolevulinic acid synthase GO:0003870|GO:0030170|GO:0033014 KEGG: 00260+2.3.1.37|KEGG: 00860+2.3.1.37|MetaCyc: PWY-5189|MetaCyc: PWY-7536|Reactome: R-HSA-189451 AMK58_12120 a1db936f9770a3a18a4348b6d013fcc4 404 Gene3D G3DSA:3.90.1150.10 14 388 4.3E-169 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_12120 a1db936f9770a3a18a4348b6d013fcc4 404 SUPERFAMILY SSF53383 3 399 3.09E-113 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_05840 d313907447c19315899bdbff7f95d3aa 133 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 10 121 5.5E-21 T 11-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 AMK58_05840 d313907447c19315899bdbff7f95d3aa 133 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 8 126 18.602 T 11-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 AMK58_05840 d313907447c19315899bdbff7f95d3aa 133 TIGRFAM TIGR00494 crcB: protein CrcB 10 123 2.2E-24 T 11-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 AMK58_24755 f2a5689be8390a4022702fc09158b83a 192 Gene3D G3DSA:2.60.120.10 13 116 4.0E-49 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_24755 f2a5689be8390a4022702fc09158b83a 192 SUPERFAMILY SSF51182 3 178 9.34E-50 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily AMK58_24755 f2a5689be8390a4022702fc09158b83a 192 Gene3D G3DSA:2.60.120.10 11 177 4.0E-49 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_24755 f2a5689be8390a4022702fc09158b83a 192 Pfam PF05962 HutD 10 172 7.4E-50 T 11-10-2018 IPR010282 Uncharacterised protein family HutD/Ves AMK58_15920 7b12bc034e7ffac7075dbba6f91f1d65 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMK58_15920 7b12bc034e7ffac7075dbba6f91f1d65 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 9.4E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15920 7b12bc034e7ffac7075dbba6f91f1d65 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 9.4E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15920 7b12bc034e7ffac7075dbba6f91f1d65 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 9.4E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15920 7b12bc034e7ffac7075dbba6f91f1d65 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 9.4E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15920 7b12bc034e7ffac7075dbba6f91f1d65 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 9.4E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15920 7b12bc034e7ffac7075dbba6f91f1d65 253 Pfam PF00106 short chain dehydrogenase 7 191 3.7E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15920 7b12bc034e7ffac7075dbba6f91f1d65 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 1.5E-5 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15920 7b12bc034e7ffac7075dbba6f91f1d65 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 1.5E-5 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15920 7b12bc034e7ffac7075dbba6f91f1d65 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 1.5E-5 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15920 7b12bc034e7ffac7075dbba6f91f1d65 253 Gene3D G3DSA:3.40.50.720 3 250 3.0E-57 T 11-10-2018 AMK58_15920 7b12bc034e7ffac7075dbba6f91f1d65 253 SUPERFAMILY SSF51735 4 247 2.31E-55 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_15815 fba4e63ff26b7f444bafedd1b895a3f1 290 Pfam PF01063 Amino-transferase class IV 40 266 1.5E-49 T 11-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 AMK58_15815 fba4e63ff26b7f444bafedd1b895a3f1 290 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 14 289 7.1E-87 T 11-10-2018 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767 AMK58_15815 fba4e63ff26b7f444bafedd1b895a3f1 290 Gene3D G3DSA:3.20.10.10 133 290 1.4E-45 T 11-10-2018 AMK58_15815 fba4e63ff26b7f444bafedd1b895a3f1 290 Gene3D G3DSA:3.30.470.10 5 130 1.1E-41 T 11-10-2018 AMK58_15815 fba4e63ff26b7f444bafedd1b895a3f1 290 ProSitePatterns PS00770 Aminotransferases class-IV signature. 193 221 - T 11-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 AMK58_15815 fba4e63ff26b7f444bafedd1b895a3f1 290 SUPERFAMILY SSF56752 6 290 3.92E-90 T 11-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 AMK58_23420 76c8455c028d5026e257f32bbac85118 263 SUPERFAMILY SSF50475 27 238 5.18E-46 T 11-10-2018 AMK58_23420 76c8455c028d5026e257f32bbac85118 263 Gene3D G3DSA:3.20.180.10 150 236 1.1E-26 T 11-10-2018 IPR037119 Haem oxygenase HugZ-like superfamily AMK58_23420 76c8455c028d5026e257f32bbac85118 263 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 27 96 7.7E-7 T 11-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AMK58_23420 76c8455c028d5026e257f32bbac85118 263 Pfam PF10615 Protein of unknown function (DUF2470) 161 229 6.5E-16 T 11-10-2018 IPR019595 Domain of unknown function DUF2470 AMK58_23420 76c8455c028d5026e257f32bbac85118 263 Gene3D G3DSA:2.30.110.10 1 147 3.2E-33 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 AMK58_23405 12f7bf130f9ceb3ac12dafc77176246d 330 SUPERFAMILY SSF55729 159 329 3.53E-20 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_23405 12f7bf130f9ceb3ac12dafc77176246d 330 Gene3D G3DSA:3.40.630.30 139 327 8.3E-21 T 11-10-2018 AMK58_23405 12f7bf130f9ceb3ac12dafc77176246d 330 SUPERFAMILY SSF55729 18 115 1.11E-7 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_23405 12f7bf130f9ceb3ac12dafc77176246d 330 Pfam PF13480 Acetyltransferase (GNAT) domain 168 304 1.2E-7 T 11-10-2018 IPR038740 BioF2-like, acetyltransferase domain KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 AMK58_24300 19d98887f3d5480b4b7e905fc19fd411 377 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 240 303 5.6E-12 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMK58_24300 19d98887f3d5480b4b7e905fc19fd411 377 SUPERFAMILY SSF52540 28 259 1.62E-73 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_24300 19d98887f3d5480b4b7e905fc19fd411 377 SMART SM00382 47 238 2.7E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_24300 19d98887f3d5480b4b7e905fc19fd411 377 Pfam PF00005 ABC transporter 39 188 4.4E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_24300 19d98887f3d5480b4b7e905fc19fd411 377 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 238 304 9.2E-18 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMK58_24300 19d98887f3d5480b4b7e905fc19fd411 377 ProSitePatterns PS00211 ABC transporters family signature. 161 175 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_24300 19d98887f3d5480b4b7e905fc19fd411 377 Gene3D G3DSA:3.40.50.300 25 359 6.9E-95 T 11-10-2018 AMK58_28140 8402b0042bfb3e7b5b61da33ad93b11d 314 SUPERFAMILY SSF53041 1 137 1.7E-42 T 11-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 AMK58_28140 8402b0042bfb3e7b5b61da33ad93b11d 314 ProSitePatterns PS00397 Site-specific recombinases active site. 6 14 - T 11-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 AMK58_28140 8402b0042bfb3e7b5b61da33ad93b11d 314 Pfam PF00239 Resolvase, N terminal domain 4 136 7.9E-43 T 11-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AMK58_28140 8402b0042bfb3e7b5b61da33ad93b11d 314 ProSitePatterns PS00398 Site-specific recombinases signature 2. 56 68 - T 11-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 AMK58_28140 8402b0042bfb3e7b5b61da33ad93b11d 314 SMART SM00857 3 137 9.1E-56 T 11-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AMK58_28140 8402b0042bfb3e7b5b61da33ad93b11d 314 Gene3D G3DSA:3.40.50.1390 2 126 3.6E-46 T 11-10-2018 AMK58_23255 9e7e1bb3873a4d4463abdcada7990986 667 Gene3D G3DSA:3.30.470.20 87 440 2.8E-157 T 11-10-2018 AMK58_23255 9e7e1bb3873a4d4463abdcada7990986 667 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 116 321 5.9E-77 T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMK58_23255 9e7e1bb3873a4d4463abdcada7990986 667 Gene3D G3DSA:3.40.50.20 1 85 6.5E-38 T 11-10-2018 AMK58_23255 9e7e1bb3873a4d4463abdcada7990986 667 SMART SM00878 335 442 6.9E-57 T 11-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMK58_23255 9e7e1bb3873a4d4463abdcada7990986 667 SUPERFAMILY SSF52440 1 113 2.59E-51 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMK58_23255 9e7e1bb3873a4d4463abdcada7990986 667 SUPERFAMILY SSF51246 330 446 2.56E-39 T 11-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AMK58_23255 9e7e1bb3873a4d4463abdcada7990986 667 Pfam PF02785 Biotin carboxylase C-terminal domain 335 443 4.0E-38 T 11-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMK58_23255 9e7e1bb3873a4d4463abdcada7990986 667 Gene3D G3DSA:3.30.1490.20 131 202 2.8E-157 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMK58_23255 9e7e1bb3873a4d4463abdcada7990986 667 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 153 167 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMK58_23255 9e7e1bb3873a4d4463abdcada7990986 667 Pfam PF00364 Biotin-requiring enzyme 597 660 1.9E-16 T 11-10-2018 IPR000089 Biotin/lipoyl attachment AMK58_23255 9e7e1bb3873a4d4463abdcada7990986 667 SUPERFAMILY SSF56059 83 346 4.77E-71 T 11-10-2018 AMK58_23255 9e7e1bb3873a4d4463abdcada7990986 667 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 1.3E-46 T 11-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMK58_23255 9e7e1bb3873a4d4463abdcada7990986 667 Gene3D G3DSA:2.40.50.100 596 664 2.2E-24 T 11-10-2018 AMK58_23255 9e7e1bb3873a4d4463abdcada7990986 667 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 285 292 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMK58_23255 9e7e1bb3873a4d4463abdcada7990986 667 Gene3D G3DSA:3.30.700.40 441 582 6.6E-7 T 11-10-2018 AMK58_23255 9e7e1bb3873a4d4463abdcada7990986 667 SUPERFAMILY SSF51230 582 662 1.31E-21 T 11-10-2018 IPR011053 Single hybrid motif AMK58_04660 26006a9db9ec32481b88e955ac8a201d 293 Pfam PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family 4 275 1.3E-135 T 11-10-2018 IPR000392 NifH/frxC family GO:0005524|GO:0016491|GO:0055114 AMK58_04660 26006a9db9ec32481b88e955ac8a201d 293 PIRSF PIRSF000363 2 278 4.2E-121 T 11-10-2018 IPR000392 NifH/frxC family GO:0005524|GO:0016491|GO:0055114 AMK58_04660 26006a9db9ec32481b88e955ac8a201d 293 Gene3D G3DSA:3.40.50.300 2 277 1.7E-67 T 11-10-2018 AMK58_04660 26006a9db9ec32481b88e955ac8a201d 293 Hamap MF_00533 Nitrogenase iron protein [nifH]. 3 276 52.994 T 11-10-2018 IPR005977 Nitrogenase iron protein NifH GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 AMK58_04660 26006a9db9ec32481b88e955ac8a201d 293 TIGRFAM TIGR01287 nifH: nitrogenase iron protein 4 278 9.6E-140 T 11-10-2018 IPR005977 Nitrogenase iron protein NifH GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 AMK58_04660 26006a9db9ec32481b88e955ac8a201d 293 ProSitePatterns PS00746 NifH/frxC family signature 1. 88 100 - T 11-10-2018 IPR030655 NifH/chlL conserved site AMK58_04660 26006a9db9ec32481b88e955ac8a201d 293 ProSitePatterns PS00692 NifH/frxC family signature 2. 125 138 - T 11-10-2018 IPR030655 NifH/chlL conserved site AMK58_04660 26006a9db9ec32481b88e955ac8a201d 293 PRINTS PR00091 Nitrogenase component II signature 86 100 6.8E-37 T 11-10-2018 AMK58_04660 26006a9db9ec32481b88e955ac8a201d 293 PRINTS PR00091 Nitrogenase component II signature 124 139 6.8E-37 T 11-10-2018 AMK58_04660 26006a9db9ec32481b88e955ac8a201d 293 PRINTS PR00091 Nitrogenase component II signature 9 22 6.8E-37 T 11-10-2018 AMK58_04660 26006a9db9ec32481b88e955ac8a201d 293 PRINTS PR00091 Nitrogenase component II signature 31 46 6.8E-37 T 11-10-2018 AMK58_04660 26006a9db9ec32481b88e955ac8a201d 293 SUPERFAMILY SSF52540 4 279 4.08E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_26330 f11ad1b681b7342691360518b59461cc 733 Gene3D G3DSA:3.30.365.10 587 733 2.8E-41 T 11-10-2018 AMK58_26330 f11ad1b681b7342691360518b59461cc 733 SMART SM01008 222 300 2.0E-23 T 11-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMK58_26330 f11ad1b681b7342691360518b59461cc 733 Gene3D G3DSA:3.30.365.10 352 447 1.3E-60 T 11-10-2018 AMK58_26330 f11ad1b681b7342691360518b59461cc 733 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 319 561 6.2E-35 T 11-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMK58_26330 f11ad1b681b7342691360518b59461cc 733 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 600 682 2.4E-17 T 11-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMK58_26330 f11ad1b681b7342691360518b59461cc 733 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 57 204 6.0E-10 T 11-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMK58_26330 f11ad1b681b7342691360518b59461cc 733 SUPERFAMILY SSF56003 323 730 3.4E-124 T 11-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 AMK58_26330 f11ad1b681b7342691360518b59461cc 733 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 223 271 1.9E-4 T 11-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMK58_26330 f11ad1b681b7342691360518b59461cc 733 Gene3D G3DSA:3.30.365.10 53 192 5.6E-18 T 11-10-2018 AMK58_26330 f11ad1b681b7342691360518b59461cc 733 SUPERFAMILY SSF56003 17 255 2.86E-37 T 11-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 AMK58_26330 f11ad1b681b7342691360518b59461cc 733 Gene3D G3DSA:3.30.365.10 328 561 1.3E-60 T 11-10-2018 AMK58_26330 f11ad1b681b7342691360518b59461cc 733 Gene3D G3DSA:3.90.1170.50 193 274 4.7E-12 T 11-10-2018 AMK58_26330 f11ad1b681b7342691360518b59461cc 733 PIRSF PIRSF036389 6 733 1.8E-252 T 11-10-2018 IPR012368 Oxidoreductase molybdopterin-binding subunit, IorB-related AMK58_01130 57afa35894f40b4b6c917aec1e1241b9 318 PRINTS PR00690 Adhesin family signature 55 68 4.0E-34 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 AMK58_01130 57afa35894f40b4b6c917aec1e1241b9 318 PRINTS PR00690 Adhesin family signature 182 203 4.0E-34 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 AMK58_01130 57afa35894f40b4b6c917aec1e1241b9 318 PRINTS PR00690 Adhesin family signature 68 85 4.0E-34 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 AMK58_01130 57afa35894f40b4b6c917aec1e1241b9 318 PRINTS PR00690 Adhesin family signature 24 42 4.0E-34 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 AMK58_01130 57afa35894f40b4b6c917aec1e1241b9 318 PRINTS PR00690 Adhesin family signature 235 253 4.0E-34 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 AMK58_01130 57afa35894f40b4b6c917aec1e1241b9 318 PRINTS PR00690 Adhesin family signature 266 285 4.0E-34 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 AMK58_01130 57afa35894f40b4b6c917aec1e1241b9 318 PRINTS PR00691 Adhesin B signature 24 45 4.8E-21 T 11-10-2018 IPR006129 Adhesin B GO:0007155 AMK58_01130 57afa35894f40b4b6c917aec1e1241b9 318 PRINTS PR00691 Adhesin B signature 124 143 4.8E-21 T 11-10-2018 IPR006129 Adhesin B GO:0007155 AMK58_01130 57afa35894f40b4b6c917aec1e1241b9 318 PRINTS PR00691 Adhesin B signature 231 248 4.8E-21 T 11-10-2018 IPR006129 Adhesin B GO:0007155 AMK58_01130 57afa35894f40b4b6c917aec1e1241b9 318 PRINTS PR00691 Adhesin B signature 182 199 4.8E-21 T 11-10-2018 IPR006129 Adhesin B GO:0007155 AMK58_01130 57afa35894f40b4b6c917aec1e1241b9 318 PRINTS PR00691 Adhesin B signature 68 87 4.8E-21 T 11-10-2018 IPR006129 Adhesin B GO:0007155 AMK58_01130 57afa35894f40b4b6c917aec1e1241b9 318 PRINTS PR00691 Adhesin B signature 49 67 4.8E-21 T 11-10-2018 IPR006129 Adhesin B GO:0007155 AMK58_01130 57afa35894f40b4b6c917aec1e1241b9 318 SUPERFAMILY SSF53807 23 301 4.07E-73 T 11-10-2018 AMK58_01130 57afa35894f40b4b6c917aec1e1241b9 318 Gene3D G3DSA:3.40.50.1980 23 168 1.0E-39 T 11-10-2018 AMK58_01130 57afa35894f40b4b6c917aec1e1241b9 318 Gene3D G3DSA:3.40.50.1980 171 301 5.6E-44 T 11-10-2018 AMK58_01130 57afa35894f40b4b6c917aec1e1241b9 318 Pfam PF01297 Zinc-uptake complex component A periplasmic 27 299 2.4E-68 T 11-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 AMK58_10540 1a1f28bec62180be9c92e3044d2d4e59 274 TIGRFAM TIGR00685 T6PP: trehalose-phosphatase 30 268 4.1E-49 T 11-10-2018 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 AMK58_10540 1a1f28bec62180be9c92e3044d2d4e59 274 SUPERFAMILY SSF56784 33 269 1.04E-35 T 11-10-2018 IPR036412 HAD-like superfamily AMK58_10540 1a1f28bec62180be9c92e3044d2d4e59 274 Pfam PF02358 Trehalose-phosphatase 35 255 1.7E-48 T 11-10-2018 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 AMK58_10540 1a1f28bec62180be9c92e3044d2d4e59 274 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 34 229 2.9E-17 T 11-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 AMK58_10540 1a1f28bec62180be9c92e3044d2d4e59 274 Gene3D G3DSA:3.30.70.1020 111 187 9.3E-46 T 11-10-2018 AMK58_10540 1a1f28bec62180be9c92e3044d2d4e59 274 Gene3D G3DSA:3.40.50.1000 34 251 9.3E-46 T 11-10-2018 IPR023214 HAD superfamily AMK58_05720 386da444fac7cccafa657721450e3f59 120 SUPERFAMILY SSF46785 13 111 1.57E-36 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_05720 386da444fac7cccafa657721450e3f59 120 Gene3D G3DSA:1.10.10.10 10 120 5.0E-43 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_05720 386da444fac7cccafa657721450e3f59 120 Pfam PF01638 HxlR-like helix-turn-helix 23 111 2.6E-37 T 11-10-2018 IPR002577 Helix-turn-helix, HxlR type AMK58_00900 030a2ff2ec3d5ee684abd5061454fe15 258 Gene3D G3DSA:3.90.226.10 2 199 4.6E-78 T 11-10-2018 AMK58_00900 030a2ff2ec3d5ee684abd5061454fe15 258 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 99 119 - T 11-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 AMK58_00900 030a2ff2ec3d5ee684abd5061454fe15 258 Gene3D G3DSA:1.10.12.10 201 257 1.6E-27 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal AMK58_00900 030a2ff2ec3d5ee684abd5061454fe15 258 SUPERFAMILY SSF52096 1 258 7.24E-93 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMK58_00900 030a2ff2ec3d5ee684abd5061454fe15 258 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 257 1.1E-87 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMK58_21735 ec7757ee36b733fa1986e85636998ee4 297 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 20 292 1.3E-49 T 11-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 AMK58_21735 ec7757ee36b733fa1986e85636998ee4 297 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 8 297 18.822 T 11-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 AMK58_21735 ec7757ee36b733fa1986e85636998ee4 297 Gene3D G3DSA:3.40.1190.20 7 295 8.4E-71 T 11-10-2018 IPR029056 Ribokinase-like AMK58_21735 ec7757ee36b733fa1986e85636998ee4 297 SUPERFAMILY SSF53613 15 294 1.01E-56 T 11-10-2018 IPR029056 Ribokinase-like AMK58_21735 ec7757ee36b733fa1986e85636998ee4 297 Pfam PF01256 Carbohydrate kinase 32 288 4.8E-45 T 11-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 AMK58_12075 f74b6478a24a03413a5b6adcd02d64bd 479 Gene3D G3DSA:1.20.1720.10 10 240 4.9E-48 T 11-10-2018 AMK58_12075 f74b6478a24a03413a5b6adcd02d64bd 479 Gene3D G3DSA:1.20.1250.20 255 458 7.5E-14 T 11-10-2018 AMK58_12075 f74b6478a24a03413a5b6adcd02d64bd 479 Pfam PF07690 Major Facilitator Superfamily 12 403 4.3E-47 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMK58_12075 f74b6478a24a03413a5b6adcd02d64bd 479 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 12 412 4.7E-71 T 11-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 AMK58_12075 f74b6478a24a03413a5b6adcd02d64bd 479 SUPERFAMILY SSF103473 5 453 3.79E-59 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_03150 822e7b8dd5eb1bebe26dd707aeb7cf49 576 SUPERFAMILY SSF48452 386 534 1.54E-18 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_03150 822e7b8dd5eb1bebe26dd707aeb7cf49 576 Gene3D G3DSA:1.25.40.10 315 558 2.4E-27 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_09710 be2e1673e4f29dd78d0645107c91f29c 196 SUPERFAMILY SSF52540 5 194 3.52E-42 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_09710 be2e1673e4f29dd78d0645107c91f29c 196 Gene3D G3DSA:3.40.50.300 5 196 1.1E-43 T 11-10-2018 AMK58_09710 be2e1673e4f29dd78d0645107c91f29c 196 Pfam PF00005 ABC transporter 12 143 2.8E-23 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_09710 be2e1673e4f29dd78d0645107c91f29c 196 SMART SM00382 21 192 4.9E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_14170 480153f38f9f85ecba8c6fc4b4acba17 223 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 35 205 4.6E-12 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_14170 480153f38f9f85ecba8c6fc4b4acba17 223 SUPERFAMILY SSF161098 14 204 5.23E-40 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_14170 480153f38f9f85ecba8c6fc4b4acba17 223 Gene3D G3DSA:1.10.3720.10 3 216 2.3E-48 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_14170 480153f38f9f85ecba8c6fc4b4acba17 223 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 14 111 1.1E-28 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMK58_10830 fce31bb5200e80bba7a0cfad16d8c815 336 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 2 330 34.048 T 11-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 AMK58_10830 fce31bb5200e80bba7a0cfad16d8c815 336 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 19 312 2.4E-57 T 11-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 AMK58_10830 fce31bb5200e80bba7a0cfad16d8c815 336 SUPERFAMILY SSF52540 48 162 2.75E-9 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_10830 fce31bb5200e80bba7a0cfad16d8c815 336 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 20 321 5.1E-89 T 11-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 AMK58_24615 59b79a1895d8706035c19341f7fecab3 307 Pfam PF00535 Glycosyl transferase family 2 7 171 1.6E-21 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMK58_24615 59b79a1895d8706035c19341f7fecab3 307 Gene3D G3DSA:3.90.550.10 1 221 5.9E-33 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_24615 59b79a1895d8706035c19341f7fecab3 307 SUPERFAMILY SSF53448 3 227 2.57E-38 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_04435 82692ed25833c26100b1f1f4c85d9648 182 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 28 121 6.2E-12 T 11-10-2018 IPR000014 PAS domain AMK58_04435 82692ed25833c26100b1f1f4c85d9648 182 Gene3D G3DSA:3.30.450.20 28 126 1.3E-21 T 11-10-2018 AMK58_04435 82692ed25833c26100b1f1f4c85d9648 182 Pfam PF08447 PAS fold 40 122 4.0E-12 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 AMK58_04435 82692ed25833c26100b1f1f4c85d9648 182 SUPERFAMILY SSF55785 29 124 3.32E-25 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_22910 433318b78678774a63808a787e991e4b 544 Pfam PF00583 Acetyltransferase (GNAT) family 105 206 1.4E-10 T 11-10-2018 IPR000182 GNAT domain AMK58_22910 433318b78678774a63808a787e991e4b 544 SUPERFAMILY SSF56059 291 536 1.45E-28 T 11-10-2018 AMK58_22910 433318b78678774a63808a787e991e4b 544 Gene3D G3DSA:3.40.630.30 16 218 5.9E-19 T 11-10-2018 AMK58_22910 433318b78678774a63808a787e991e4b 544 Gene3D G3DSA:3.30.470.20 446 535 1.9E-9 T 11-10-2018 AMK58_22910 433318b78678774a63808a787e991e4b 544 Pfam PF08443 RimK-like ATP-grasp domain 290 392 3.4E-7 T 11-10-2018 IPR013651 ATP-grasp fold, RimK-type Reactome: R-HSA-70614 AMK58_22910 433318b78678774a63808a787e991e4b 544 Gene3D G3DSA:3.30.470.20 282 441 1.5E-11 T 11-10-2018 AMK58_22910 433318b78678774a63808a787e991e4b 544 TIGRFAM TIGR03103 trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103 1 538 2.0E-268 T 11-10-2018 IPR017534 GNAT-acetyltransferase AMK58_22910 433318b78678774a63808a787e991e4b 544 SUPERFAMILY SSF55729 54 212 1.39E-20 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_07570 5bb506110f4e443f756e52648dab3016 126 Pfam PF08905 Domain of unknown function (DUF1850) 23 108 6.0E-28 T 11-10-2018 IPR015001 Protein of unknown function DUF1850 AMK58_07860 3b2522568f020c1cf63128ea525462d9 446 PRINTS PR00409 Phthalate dioxygenase reductase family signature 304 318 7.2E-6 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 AMK58_07860 3b2522568f020c1cf63128ea525462d9 446 PRINTS PR00409 Phthalate dioxygenase reductase family signature 326 345 7.2E-6 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 AMK58_07860 3b2522568f020c1cf63128ea525462d9 446 PRINTS PR00409 Phthalate dioxygenase reductase family signature 410 418 7.2E-6 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 AMK58_07860 3b2522568f020c1cf63128ea525462d9 446 SUPERFAMILY SSF52343 320 443 7.6E-19 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMK58_07860 3b2522568f020c1cf63128ea525462d9 446 SUPERFAMILY SSF63380 237 317 6.81E-14 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AMK58_07860 3b2522568f020c1cf63128ea525462d9 446 Pfam PF01794 Ferric reductase like transmembrane component 43 177 2.9E-19 T 11-10-2018 IPR013130 Ferric reductase transmembrane component-like domain AMK58_07860 3b2522568f020c1cf63128ea525462d9 446 Gene3D G3DSA:3.40.50.80 318 446 2.9E-15 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMK58_07860 3b2522568f020c1cf63128ea525462d9 446 Pfam PF08022 FAD-binding domain 237 314 1.1E-6 T 11-10-2018 IPR013112 FAD-binding 8 GO:0016491|GO:0055114 AMK58_07860 3b2522568f020c1cf63128ea525462d9 446 Gene3D G3DSA:2.40.30.10 223 314 4.0E-11 T 11-10-2018 AMK58_07940 0bfcde0285a62c3889d768846ea33c40 83 Pfam PF02597 ThiS family 3 83 1.8E-20 T 11-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 AMK58_07940 0bfcde0285a62c3889d768846ea33c40 83 SUPERFAMILY SSF54285 1 83 1.57E-21 T 11-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp AMK58_07940 0bfcde0285a62c3889d768846ea33c40 83 TIGRFAM TIGR01682 moaD: molybdopterin converting factor, subunit 1 1 83 4.1E-26 T 11-10-2018 AMK58_07940 0bfcde0285a62c3889d768846ea33c40 83 Gene3D G3DSA:3.10.20.30 1 83 1.1E-22 T 11-10-2018 IPR012675 Beta-grasp domain superfamily AMK58_21245 0e33afbebbcccdd5b54cc93ca8d13bfa 226 SUPERFAMILY SSF89155 6 206 3.01E-46 T 11-10-2018 IPR036411 TorD-like superfamily AMK58_21245 0e33afbebbcccdd5b54cc93ca8d13bfa 226 Gene3D G3DSA:1.10.3480.10 5 208 7.5E-36 T 11-10-2018 AMK58_21245 0e33afbebbcccdd5b54cc93ca8d13bfa 226 Pfam PF02613 Nitrate reductase delta subunit 48 173 6.0E-29 T 11-10-2018 IPR020945 DMSO/Nitrate reductase chaperone AMK58_23940 9213242e7ac688b95ebb4cdb4623aaa7 232 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_23940 9213242e7ac688b95ebb4cdb4623aaa7 232 SUPERFAMILY SSF52540 2 227 8.19E-57 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_23940 9213242e7ac688b95ebb4cdb4623aaa7 232 Gene3D G3DSA:3.40.50.300 1 230 3.9E-58 T 11-10-2018 AMK58_23940 9213242e7ac688b95ebb4cdb4623aaa7 232 SMART SM00382 26 206 2.5E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_23940 9213242e7ac688b95ebb4cdb4623aaa7 232 Pfam PF00005 ABC transporter 17 157 4.4E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_19185 a955c5383d678b5886aab660665f3958 187 Gene3D G3DSA:3.40.50.1820 1 185 1.6E-54 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_19185 a955c5383d678b5886aab660665f3958 187 SUPERFAMILY SSF53474 6 178 1.01E-32 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_19185 a955c5383d678b5886aab660665f3958 187 Pfam PF06821 Serine hydrolase 6 176 1.1E-62 T 11-10-2018 IPR010662 Putative hydrolase RBBP9/YdeN GO:0016787 AMK58_22755 b9be851681af3aef810aa35e51a1557a 296 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 14 31 1.1E-24 T 11-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMK58_22755 b9be851681af3aef810aa35e51a1557a 296 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 138 160 1.1E-24 T 11-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMK58_22755 b9be851681af3aef810aa35e51a1557a 296 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 94 115 1.1E-24 T 11-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMK58_22755 b9be851681af3aef810aa35e51a1557a 296 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 245 263 1.1E-24 T 11-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMK58_22755 b9be851681af3aef810aa35e51a1557a 296 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 203 220 1.1E-24 T 11-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMK58_22755 b9be851681af3aef810aa35e51a1557a 296 SUPERFAMILY SSF63829 11 293 3.49E-60 T 11-10-2018 AMK58_22755 b9be851681af3aef810aa35e51a1557a 296 Gene3D G3DSA:2.120.10.30 3 294 1.6E-86 T 11-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like AMK58_22755 b9be851681af3aef810aa35e51a1557a 296 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 14 263 1.5E-69 T 11-10-2018 IPR013658 SMP-30/Gluconolactonase/LRE-like region AMK58_01470 5c84ffc898149630746f56b5b10796db 100 Hamap MF_00434 Putative pterin-4-alpha-carbinolamine dehydratase. 2 95 20.152 T 11-10-2018 IPR001533 Pterin 4 alpha carbinolamine dehydratase GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 AMK58_01470 5c84ffc898149630746f56b5b10796db 100 SUPERFAMILY SSF55248 2 95 1.22E-28 T 11-10-2018 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 AMK58_01470 5c84ffc898149630746f56b5b10796db 100 Gene3D G3DSA:3.30.1360.20 1 97 3.2E-31 T 11-10-2018 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 AMK58_01470 5c84ffc898149630746f56b5b10796db 100 Pfam PF01329 Pterin 4 alpha carbinolamine dehydratase 6 94 2.1E-26 T 11-10-2018 IPR001533 Pterin 4 alpha carbinolamine dehydratase GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 AMK58_08995 b3eecf678ed4a0510f6794718432b295 321 PRINTS PR00111 Alpha/beta hydrolase fold signature 142 155 4.6E-11 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_08995 b3eecf678ed4a0510f6794718432b295 321 PRINTS PR00111 Alpha/beta hydrolase fold signature 128 141 4.6E-11 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_08995 b3eecf678ed4a0510f6794718432b295 321 PRINTS PR00111 Alpha/beta hydrolase fold signature 83 98 4.6E-11 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_08995 b3eecf678ed4a0510f6794718432b295 321 PRINTS PR00111 Alpha/beta hydrolase fold signature 254 268 4.6E-11 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_08995 b3eecf678ed4a0510f6794718432b295 321 SUPERFAMILY SSF53474 30 307 4.5E-54 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_08995 b3eecf678ed4a0510f6794718432b295 321 Pfam PF12697 Alpha/beta hydrolase family 59 303 2.4E-22 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_08995 b3eecf678ed4a0510f6794718432b295 321 Gene3D G3DSA:3.40.50.1820 18 310 3.5E-56 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_14880 f5f8e7676cf429ade5db70c580729b38 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 4.1E-29 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_14880 f5f8e7676cf429ade5db70c580729b38 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 199 219 4.1E-29 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_14880 f5f8e7676cf429ade5db70c580729b38 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 4.1E-29 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_14880 f5f8e7676cf429ade5db70c580729b38 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 4.1E-29 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_14880 f5f8e7676cf429ade5db70c580729b38 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 119 135 4.1E-29 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_14880 f5f8e7676cf429ade5db70c580729b38 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 4.1E-29 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_14880 f5f8e7676cf429ade5db70c580729b38 237 SUPERFAMILY SSF51735 1 235 1.32E-57 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_14880 f5f8e7676cf429ade5db70c580729b38 237 Gene3D G3DSA:3.40.50.720 1 236 1.3E-65 T 11-10-2018 AMK58_14880 f5f8e7676cf429ade5db70c580729b38 237 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 7.7E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_14880 f5f8e7676cf429ade5db70c580729b38 237 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 165 7.7E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_14880 f5f8e7676cf429ade5db70c580729b38 237 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 133 7.7E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_14880 f5f8e7676cf429ade5db70c580729b38 237 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 235 1.5E-45 T 11-10-2018 AMK58_22475 5ef1e71953671ae23573616697e7c74e 350 Pfam PF00144 Beta-lactamase 59 324 6.8E-25 T 11-10-2018 IPR001466 Beta-lactamase-related AMK58_22475 5ef1e71953671ae23573616697e7c74e 350 Gene3D G3DSA:3.40.710.10 38 332 8.2E-60 T 11-10-2018 AMK58_22475 5ef1e71953671ae23573616697e7c74e 350 SUPERFAMILY SSF56601 18 327 8.3E-66 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMK58_21160 8b1dd0485e9ee471f4fd8a451799cc68 118 Pfam PF03413 Peptidase propeptide and YPEB domain 46 103 6.8E-10 T 11-10-2018 IPR025711 PepSY domain AMK58_21160 8b1dd0485e9ee471f4fd8a451799cc68 118 Gene3D G3DSA:3.10.450.40 38 105 8.1E-8 T 11-10-2018 AMK58_26685 325e3e762a775be0828069011d92ddd1 420 SUPERFAMILY SSF142695 205 379 5.89E-32 T 11-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AMK58_26685 325e3e762a775be0828069011d92ddd1 420 Gene3D G3DSA:3.40.50.10990 221 379 1.4E-32 T 11-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AMK58_26685 325e3e762a775be0828069011d92ddd1 420 Pfam PF12471 GTP cyclohydrolase N terminal 11 200 2.9E-82 T 11-10-2018 IPR022163 GTP cyclohydrolase N-terminal AMK58_26685 325e3e762a775be0828069011d92ddd1 420 Pfam PF00925 GTP cyclohydrolase II 230 377 1.5E-14 T 11-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AMK58_00425 ae639622d1aca8ed15a3d2dd9d333ef1 348 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 140 156 - T 11-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 AMK58_00425 ae639622d1aca8ed15a3d2dd9d333ef1 348 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 5 345 46.665 T 11-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 AMK58_00425 ae639622d1aca8ed15a3d2dd9d333ef1 348 SUPERFAMILY SSF51726 6 344 7.32E-102 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 AMK58_00425 ae639622d1aca8ed15a3d2dd9d333ef1 348 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 8 342 1.5E-122 T 11-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 AMK58_00425 ae639622d1aca8ed15a3d2dd9d333ef1 348 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 6 344 1.0E-115 T 11-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 AMK58_00425 ae639622d1aca8ed15a3d2dd9d333ef1 348 Gene3D G3DSA:3.20.20.210 3 346 1.7E-125 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 AMK58_07010 3f3546bb7b692301ea6c63e0e184b259 76 Pfam PF09723 Zinc ribbon domain 1 38 5.4E-14 T 11-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain AMK58_07010 3f3546bb7b692301ea6c63e0e184b259 76 SMART SM00834 1 40 4.0E-14 T 11-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain AMK58_07010 3f3546bb7b692301ea6c63e0e184b259 76 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 1 44 3.0E-14 T 11-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain AMK58_26090 e36ef2d5b71b01cee38164a991bc6176 319 Pfam PF03466 LysR substrate binding domain 87 294 5.8E-40 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_26090 e36ef2d5b71b01cee38164a991bc6176 319 SUPERFAMILY SSF53850 89 298 7.91E-37 T 11-10-2018 AMK58_26090 e36ef2d5b71b01cee38164a991bc6176 319 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 3.0E-21 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_26090 e36ef2d5b71b01cee38164a991bc6176 319 SUPERFAMILY SSF46785 1 86 4.27E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_26090 e36ef2d5b71b01cee38164a991bc6176 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.3E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_26090 e36ef2d5b71b01cee38164a991bc6176 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.3E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_26090 e36ef2d5b71b01cee38164a991bc6176 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.3E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_26090 e36ef2d5b71b01cee38164a991bc6176 319 Gene3D G3DSA:3.40.190.290 91 301 1.7E-38 T 11-10-2018 AMK58_26090 e36ef2d5b71b01cee38164a991bc6176 319 Gene3D G3DSA:1.10.10.10 1 90 8.9E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_01465 4bcccdf5604271882c6e18ac779316d1 137 Pfam PF06262 Zincin-like metallopeptidase 38 133 7.0E-36 T 11-10-2018 IPR010428 Zincin-like metallopeptidase AMK58_01465 4bcccdf5604271882c6e18ac779316d1 137 SUPERFAMILY SSF55486 12 133 7.77E-35 T 11-10-2018 AMK58_01465 4bcccdf5604271882c6e18ac779316d1 137 Gene3D G3DSA:3.30.2010.20 11 133 1.7E-32 T 11-10-2018 IPR038555 Zincin-like metallopeptidase superfamily AMK58_27935 0be4973996d3dd23f45877dc98f039a3 144 Gene3D G3DSA:1.10.10.10 14 86 8.3E-6 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_27935 0be4973996d3dd23f45877dc98f039a3 144 SUPERFAMILY SSF46785 26 82 1.54E-5 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_19450 b8a25b8b7605688ad7a8abbb273bd687 1621 Gene3D G3DSA:2.60.40.1930 379 471 2.0E-10 T 11-10-2018 AMK58_19450 b8a25b8b7605688ad7a8abbb273bd687 1621 PIRSF PIRSF038980 15 1621 0.0 T 11-10-2018 IPR026284 Alpha-2-macroglobulin domain protein, bacteria AMK58_19450 b8a25b8b7605688ad7a8abbb273bd687 1621 SUPERFAMILY SSF48239 1159 1406 3.14E-26 T 11-10-2018 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid AMK58_19450 b8a25b8b7605688ad7a8abbb273bd687 1621 SMART SM01360 960 1048 4.2E-26 T 11-10-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 AMK58_19450 b8a25b8b7605688ad7a8abbb273bd687 1621 SMART SM01359 749 896 1.6E-23 T 11-10-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 AMK58_19450 b8a25b8b7605688ad7a8abbb273bd687 1621 Gene3D G3DSA:1.50.10.20 1162 1427 1.7E-17 T 11-10-2018 AMK58_19450 b8a25b8b7605688ad7a8abbb273bd687 1621 Pfam PF00207 Alpha-2-macroglobulin family 961 1038 1.4E-7 T 11-10-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 AMK58_19450 b8a25b8b7605688ad7a8abbb273bd687 1621 Pfam PF01835 MG2 domain 379 470 5.7E-24 T 11-10-2018 IPR002890 Alpha-2-macroglobulin, N-terminal GO:0004866 AMK58_19450 b8a25b8b7605688ad7a8abbb273bd687 1621 Pfam PF07703 Alpha-2-macroglobulin family N-terminal region 757 896 1.5E-10 T 11-10-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 AMK58_19450 b8a25b8b7605688ad7a8abbb273bd687 1621 Pfam PF11974 Alpha-2-macroglobulin MG1 domain 258 343 1.2E-13 T 11-10-2018 AMK58_16640 f964c0da3069db3042f4c3c072ae2813 216 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 10 106 1.8E-28 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMK58_16640 f964c0da3069db3042f4c3c072ae2813 216 SUPERFAMILY SSF161098 12 197 1.26E-40 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_16640 f964c0da3069db3042f4c3c072ae2813 216 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 32 210 4.1E-14 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_16640 f964c0da3069db3042f4c3c072ae2813 216 Gene3D G3DSA:1.10.3720.10 6 213 2.0E-46 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_10350 7f8a967fdd8924179d682b0036f886c8 142 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 127 2.5E-58 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_10350 7f8a967fdd8924179d682b0036f886c8 142 PRINTS PR00060 Ribosomal protein L16 signature 58 87 3.3E-39 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_10350 7f8a967fdd8924179d682b0036f886c8 142 PRINTS PR00060 Ribosomal protein L16 signature 88 117 3.3E-39 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_10350 7f8a967fdd8924179d682b0036f886c8 142 PRINTS PR00060 Ribosomal protein L16 signature 42 53 3.3E-39 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_10350 7f8a967fdd8924179d682b0036f886c8 142 PRINTS PR00060 Ribosomal protein L16 signature 24 36 3.3E-39 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_10350 7f8a967fdd8924179d682b0036f886c8 142 SUPERFAMILY SSF54686 1 134 1.03E-56 T 11-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 AMK58_10350 7f8a967fdd8924179d682b0036f886c8 142 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 11-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_10350 7f8a967fdd8924179d682b0036f886c8 142 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 38.79 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_10350 7f8a967fdd8924179d682b0036f886c8 142 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 1.1E-51 T 11-10-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 AMK58_10350 7f8a967fdd8924179d682b0036f886c8 142 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 59 70 - T 11-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_10350 7f8a967fdd8924179d682b0036f886c8 142 Gene3D G3DSA:3.90.1170.10 1 142 5.6E-59 T 11-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 AMK58_25215 c2362c02c61abc1ab76f2f60ade1fcd8 499 TIGRFAM TIGR02734 crtI_fam: phytoene desaturase 1 474 5.2E-153 T 11-10-2018 IPR014105 Carotenoid/retinoid oxidoreductase GO:0016117|GO:0055114 AMK58_25215 c2362c02c61abc1ab76f2f60ade1fcd8 499 SUPERFAMILY SSF51905 2 469 5.55E-54 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_25215 c2362c02c61abc1ab76f2f60ade1fcd8 499 ProSitePatterns PS00982 Bacterial-type phytoene dehydrogenase signature. 441 461 - T 11-10-2018 IPR008150 Phytoene dehydrogenase, bacterial-type, conserved site AMK58_25215 c2362c02c61abc1ab76f2f60ade1fcd8 499 Pfam PF01593 Flavin containing amine oxidoreductase 7 453 7.5E-26 T 11-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 AMK58_25215 c2362c02c61abc1ab76f2f60ade1fcd8 499 Gene3D G3DSA:3.50.50.60 183 306 1.5E-17 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_25215 c2362c02c61abc1ab76f2f60ade1fcd8 499 Gene3D G3DSA:3.50.50.60 1 96 3.5E-12 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_27345 fb90acef1544cd0d5d283f29685886b5 311 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 1 117 1.6E-47 T 11-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 AMK58_27345 fb90acef1544cd0d5d283f29685886b5 311 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 125 140 - T 11-10-2018 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 AMK58_27345 fb90acef1544cd0d5d283f29685886b5 311 Gene3D G3DSA:3.40.50.2020 5 299 5.7E-120 T 11-10-2018 AMK58_27345 fb90acef1544cd0d5d283f29685886b5 311 Hamap MF_00583_B Putative ribose-phosphate pyrophosphokinase [prs]. 1 311 48.088 T 11-10-2018 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type GO:0004749 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 AMK58_27345 fb90acef1544cd0d5d283f29685886b5 311 SUPERFAMILY SSF53271 66 301 4.04E-62 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like AMK58_27345 fb90acef1544cd0d5d283f29685886b5 311 Pfam PF14572 Phosphoribosyl synthetase-associated domain 202 310 1.3E-19 T 11-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 AMK58_27345 fb90acef1544cd0d5d283f29685886b5 311 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 1 311 5.9E-113 T 11-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 AMK58_27345 fb90acef1544cd0d5d283f29685886b5 311 SMART SM01400 1 117 4.1E-78 T 11-10-2018 AMK58_27345 fb90acef1544cd0d5d283f29685886b5 311 Gene3D G3DSA:3.40.50.2020 144 287 5.7E-120 T 11-10-2018 AMK58_08110 5879c827f7dcc88ea5c82669e2bf579b 274 SUPERFAMILY SSF47188 10 127 5.89E-13 T 11-10-2018 IPR035938 Hemerythrin-like superfamily AMK58_08110 5879c827f7dcc88ea5c82669e2bf579b 274 SUPERFAMILY SSF47188 141 264 6.15E-23 T 11-10-2018 IPR035938 Hemerythrin-like superfamily AMK58_08110 5879c827f7dcc88ea5c82669e2bf579b 274 Pfam PF01814 Hemerythrin HHE cation binding domain 156 258 2.2E-8 T 11-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 AMK58_08110 5879c827f7dcc88ea5c82669e2bf579b 274 Gene3D G3DSA:1.20.120.50 6 135 9.6E-11 T 11-10-2018 IPR035938 Hemerythrin-like superfamily AMK58_08110 5879c827f7dcc88ea5c82669e2bf579b 274 Gene3D G3DSA:1.20.120.50 138 270 5.9E-22 T 11-10-2018 IPR035938 Hemerythrin-like superfamily AMK58_08110 5879c827f7dcc88ea5c82669e2bf579b 274 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 144 264 1.3E-22 T 11-10-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 AMK58_22565 11f2c94b0336552b5e6eb56be7c7ca34 102 SUPERFAMILY SSF47336 19 94 6.02E-13 T 11-10-2018 IPR036736 ACP-like superfamily AMK58_22565 11f2c94b0336552b5e6eb56be7c7ca34 102 Gene3D G3DSA:1.10.1200.10 17 95 1.4E-16 T 11-10-2018 IPR036736 ACP-like superfamily AMK58_22565 11f2c94b0336552b5e6eb56be7c7ca34 102 Pfam PF00550 Phosphopantetheine attachment site 29 83 4.7E-7 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain AMK58_22900 1fba9e5d6105343ac488042b9d4af93f 417 Pfam PF07690 Major Facilitator Superfamily 205 388 1.2E-15 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMK58_22900 1fba9e5d6105343ac488042b9d4af93f 417 SUPERFAMILY SSF103473 6 384 2.62E-33 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_22900 1fba9e5d6105343ac488042b9d4af93f 417 Gene3D G3DSA:1.20.1250.20 201 400 2.7E-18 T 11-10-2018 AMK58_22900 1fba9e5d6105343ac488042b9d4af93f 417 Gene3D G3DSA:1.20.1250.20 4 190 6.6E-9 T 11-10-2018 AMK58_12335 05e47f3801fae8659352912e6a0ed6e8 230 SMART SM00419 169 217 2.5E-5 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMK58_12335 05e47f3801fae8659352912e6a0ed6e8 230 Gene3D G3DSA:2.60.120.10 13 152 4.3E-39 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_12335 05e47f3801fae8659352912e6a0ed6e8 230 Pfam PF13545 Crp-like helix-turn-helix domain 160 223 6.0E-15 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMK58_12335 05e47f3801fae8659352912e6a0ed6e8 230 SUPERFAMILY SSF51206 16 154 1.83E-25 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like AMK58_12335 05e47f3801fae8659352912e6a0ed6e8 230 Gene3D G3DSA:1.10.10.10 153 226 6.5E-16 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_12335 05e47f3801fae8659352912e6a0ed6e8 230 Pfam PF00027 Cyclic nucleotide-binding domain 39 126 1.0E-10 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_12335 05e47f3801fae8659352912e6a0ed6e8 230 SUPERFAMILY SSF46785 158 224 6.62E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_08620 97afac10c576d3cb884032d87984ac1b 497 Gene3D G3DSA:3.40.605.10 36 484 7.4E-184 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMK58_08620 97afac10c576d3cb884032d87984ac1b 497 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 265 272 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AMK58_08620 97afac10c576d3cb884032d87984ac1b 497 Gene3D G3DSA:3.40.309.10 269 459 7.4E-184 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMK58_08620 97afac10c576d3cb884032d87984ac1b 497 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 293 304 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AMK58_08620 97afac10c576d3cb884032d87984ac1b 497 SUPERFAMILY SSF53720 15 492 5.89E-171 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMK58_08620 97afac10c576d3cb884032d87984ac1b 497 Pfam PF00171 Aldehyde dehydrogenase family 30 489 6.5E-171 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMK58_08620 97afac10c576d3cb884032d87984ac1b 497 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 41 488 1.3E-222 T 11-10-2018 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 AMK58_07580 c3a93e283ecca1af9e34da84797585ed 274 SUPERFAMILY SSF52402 1 143 1.0E-12 T 11-10-2018 AMK58_07580 c3a93e283ecca1af9e34da84797585ed 274 SUPERFAMILY SSF52402 154 273 2.6E-17 T 11-10-2018 AMK58_07580 c3a93e283ecca1af9e34da84797585ed 274 Pfam PF00582 Universal stress protein family 3 143 3.1E-6 T 11-10-2018 IPR006016 UspA AMK58_07580 c3a93e283ecca1af9e34da84797585ed 274 Pfam PF00582 Universal stress protein family 154 272 4.4E-7 T 11-10-2018 IPR006016 UspA AMK58_07580 c3a93e283ecca1af9e34da84797585ed 274 Gene3D G3DSA:3.40.50.12370 6 273 3.4E-30 T 11-10-2018 AMK58_00240 94dd76e27bec941c5410ccb80b98e4ff 632 Pfam PF00005 ABC transporter 342 496 1.3E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_00240 94dd76e27bec941c5410ccb80b98e4ff 632 Gene3D G3DSA:3.40.50.300 3 294 1.5E-81 T 11-10-2018 AMK58_00240 94dd76e27bec941c5410ccb80b98e4ff 632 Gene3D G3DSA:3.40.50.300 311 630 4.9E-89 T 11-10-2018 AMK58_00240 94dd76e27bec941c5410ccb80b98e4ff 632 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 548 580 2.0E-8 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMK58_00240 94dd76e27bec941c5410ccb80b98e4ff 632 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 246 284 1.2E-6 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMK58_00240 94dd76e27bec941c5410ccb80b98e4ff 632 SUPERFAMILY SSF52540 5 265 2.41E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_00240 94dd76e27bec941c5410ccb80b98e4ff 632 SUPERFAMILY SSF52540 313 568 3.39E-72 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_00240 94dd76e27bec941c5410ccb80b98e4ff 632 Pfam PF00005 ABC transporter 26 194 6.2E-24 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_00240 94dd76e27bec941c5410ccb80b98e4ff 632 SMART SM00382 350 546 7.0E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_00240 94dd76e27bec941c5410ccb80b98e4ff 632 SMART SM00382 34 244 1.2E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_00240 94dd76e27bec941c5410ccb80b98e4ff 632 ProSitePatterns PS00211 ABC transporters family signature. 469 483 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_19145 d2330ab341177cfd1274aae6e1e3830a 182 SMART SM00530 8 63 3.8E-8 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMK58_19145 d2330ab341177cfd1274aae6e1e3830a 182 Gene3D G3DSA:1.10.260.40 2 69 5.7E-13 T 11-10-2018 AMK58_19145 d2330ab341177cfd1274aae6e1e3830a 182 Gene3D G3DSA:2.60.120.10 91 182 4.5E-26 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_19145 d2330ab341177cfd1274aae6e1e3830a 182 Pfam PF07883 Cupin domain 109 177 2.3E-11 T 11-10-2018 IPR013096 Cupin 2, conserved barrel AMK58_19145 d2330ab341177cfd1274aae6e1e3830a 182 Pfam PF01381 Helix-turn-helix 9 61 2.8E-9 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMK58_19145 d2330ab341177cfd1274aae6e1e3830a 182 SUPERFAMILY SSF51182 56 180 6.5E-23 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily AMK58_19145 d2330ab341177cfd1274aae6e1e3830a 182 SUPERFAMILY SSF47413 5 65 1.86E-12 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMK58_01570 d42fb3b1842bd7542d978d8b68222b52 259 SUPERFAMILY SSF53448 19 249 5.18E-47 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_01570 d42fb3b1842bd7542d978d8b68222b52 259 Gene3D G3DSA:3.90.550.10 21 254 5.1E-45 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_01570 d42fb3b1842bd7542d978d8b68222b52 259 Pfam PF12804 MobA-like NTP transferase domain 22 151 1.1E-16 T 11-10-2018 IPR025877 MobA-like NTP transferase AMK58_21060 2acf1c3f0eb1a39b06d47342d10f0e69 198 Hamap MF_00839 Ribosome hibernation promoting factor [hpf]. 1 193 19.94 T 11-10-2018 IPR034694 Ribosome hibernation promoting factor, long/plastid AMK58_21060 2acf1c3f0eb1a39b06d47342d10f0e69 198 Gene3D G3DSA:3.30.505.50 148 192 5.7E-11 T 11-10-2018 IPR038416 Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain superfamily AMK58_21060 2acf1c3f0eb1a39b06d47342d10f0e69 198 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 99 1.8E-19 T 11-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 AMK58_21060 2acf1c3f0eb1a39b06d47342d10f0e69 198 Gene3D G3DSA:3.30.160.100 1 108 4.1E-20 T 11-10-2018 IPR036567 Ribosome hibernation promotion factor-like AMK58_21060 2acf1c3f0eb1a39b06d47342d10f0e69 198 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 4 95 4.3E-17 T 11-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 AMK58_21060 2acf1c3f0eb1a39b06d47342d10f0e69 198 Pfam PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus 134 188 3.9E-15 T 11-10-2018 IPR032528 Sigma 54 modulation/S30EA ribosomal protein, C-terminal AMK58_21060 2acf1c3f0eb1a39b06d47342d10f0e69 198 SUPERFAMILY SSF69754 1 99 2.09E-25 T 11-10-2018 IPR036567 Ribosome hibernation promotion factor-like AMK58_12435 d4481e73978fece3cbe6f96e7cd8c981 422 Gene3D G3DSA:1.20.1530.20 8 413 1.1E-71 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily AMK58_12435 d4481e73978fece3cbe6f96e7cd8c981 422 Pfam PF00999 Sodium/hydrogen exchanger family 17 406 2.1E-49 T 11-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AMK58_06290 6c7416b9b10c67004bc62667b5114fd8 377 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 144 184 2.6E-7 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMK58_06290 6c7416b9b10c67004bc62667b5114fd8 377 Pfam PF02163 Peptidase family M50 14 354 1.5E-76 T 11-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 AMK58_06290 6c7416b9b10c67004bc62667b5114fd8 377 SMART SM00228 119 198 2.0E-10 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMK58_06290 6c7416b9b10c67004bc62667b5114fd8 377 SUPERFAMILY SSF50156 101 207 1.71E-19 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 AMK58_06290 6c7416b9b10c67004bc62667b5114fd8 377 Gene3D G3DSA:2.30.42.10 141 231 4.6E-21 T 11-10-2018 AMK58_06290 6c7416b9b10c67004bc62667b5114fd8 377 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 144 366 1.3E-48 T 11-10-2018 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 AMK58_14680 1bfdcccce4928cdc615ad737f60024c2 421 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 7 413 5.5E-147 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMK58_14680 1bfdcccce4928cdc615ad737f60024c2 421 Gene3D G3DSA:2.40.37.10 16 410 9.0E-147 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AMK58_14680 1bfdcccce4928cdc615ad737f60024c2 421 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 33 371 6.8E-26 T 11-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 AMK58_14680 1bfdcccce4928cdc615ad737f60024c2 421 SUPERFAMILY SSF50621 253 417 1.15E-53 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AMK58_14680 1bfdcccce4928cdc615ad737f60024c2 421 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 77 89 7.6E-22 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AMK58_14680 1bfdcccce4928cdc615ad737f60024c2 421 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 190 203 7.6E-22 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AMK58_14680 1bfdcccce4928cdc615ad737f60024c2 421 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 270 289 7.6E-22 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AMK58_14680 1bfdcccce4928cdc615ad737f60024c2 421 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 371 384 7.6E-22 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AMK58_14680 1bfdcccce4928cdc615ad737f60024c2 421 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 57 75 7.6E-22 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AMK58_14680 1bfdcccce4928cdc615ad737f60024c2 421 SUPERFAMILY SSF51419 26 282 3.53E-79 T 11-10-2018 IPR029066 PLP-binding barrel AMK58_14680 1bfdcccce4928cdc615ad737f60024c2 421 PRINTS PR01181 Diaminopimelate decarboxylase signature 164 173 7.5E-27 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMK58_14680 1bfdcccce4928cdc615ad737f60024c2 421 PRINTS PR01181 Diaminopimelate decarboxylase signature 298 316 7.5E-27 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMK58_14680 1bfdcccce4928cdc615ad737f60024c2 421 PRINTS PR01181 Diaminopimelate decarboxylase signature 381 403 7.5E-27 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMK58_14680 1bfdcccce4928cdc615ad737f60024c2 421 PRINTS PR01181 Diaminopimelate decarboxylase signature 75 92 7.5E-27 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMK58_14680 1bfdcccce4928cdc615ad737f60024c2 421 Gene3D G3DSA:3.20.20.10 34 275 9.0E-147 T 11-10-2018 IPR029066 PLP-binding barrel AMK58_14680 1bfdcccce4928cdc615ad737f60024c2 421 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 228 241 - T 11-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site AMK58_14680 1bfdcccce4928cdc615ad737f60024c2 421 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 36 279 3.8E-59 T 11-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 AMK58_14680 1bfdcccce4928cdc615ad737f60024c2 421 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 15 414 40.077 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMK58_10925 a9d23360928cd04994823715090faac0 313 Pfam PF12146 Serine aminopeptidase, S33 36 294 9.3E-41 T 11-10-2018 IPR022742 Serine aminopeptidase, S33 AMK58_10925 a9d23360928cd04994823715090faac0 313 SUPERFAMILY SSF53474 7 310 8.73E-41 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_10925 a9d23360928cd04994823715090faac0 313 Gene3D G3DSA:3.40.50.1820 10 311 1.3E-52 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_27715 ae86b11f90fc12512aef5ffd29a76d8f 308 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 115 292 3.7E-26 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_27715 ae86b11f90fc12512aef5ffd29a76d8f 308 SUPERFAMILY SSF161098 93 275 2.45E-18 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_27715 ae86b11f90fc12512aef5ffd29a76d8f 308 Gene3D G3DSA:1.10.3720.10 87 284 7.3E-20 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_09105 4fcc52d826ebaa26430a588794c155b1 319 SMART SM00271 2 60 9.8E-28 T 11-10-2018 IPR001623 DnaJ domain AMK58_09105 4fcc52d826ebaa26430a588794c155b1 319 Gene3D G3DSA:1.10.287.110 1 130 4.5E-27 T 11-10-2018 IPR036869 Chaperone J-domain superfamily AMK58_09105 4fcc52d826ebaa26430a588794c155b1 319 PRINTS PR00625 DnaJ domain signature 23 38 2.6E-19 T 11-10-2018 IPR001623 DnaJ domain AMK58_09105 4fcc52d826ebaa26430a588794c155b1 319 PRINTS PR00625 DnaJ domain signature 40 60 2.6E-19 T 11-10-2018 IPR001623 DnaJ domain AMK58_09105 4fcc52d826ebaa26430a588794c155b1 319 PRINTS PR00625 DnaJ domain signature 5 23 2.6E-19 T 11-10-2018 IPR001623 DnaJ domain AMK58_09105 4fcc52d826ebaa26430a588794c155b1 319 SUPERFAMILY SSF49493 215 293 2.09E-19 T 11-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AMK58_09105 4fcc52d826ebaa26430a588794c155b1 319 Pfam PF00226 DnaJ domain 3 65 3.9E-24 T 11-10-2018 IPR001623 DnaJ domain AMK58_09105 4fcc52d826ebaa26430a588794c155b1 319 SUPERFAMILY SSF49493 139 219 6.28E-19 T 11-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AMK58_09105 4fcc52d826ebaa26430a588794c155b1 319 Gene3D G3DSA:2.60.260.20 211 290 5.0E-28 T 11-10-2018 AMK58_09105 4fcc52d826ebaa26430a588794c155b1 319 Gene3D G3DSA:2.60.260.20 140 209 9.2E-17 T 11-10-2018 AMK58_09105 4fcc52d826ebaa26430a588794c155b1 319 SUPERFAMILY SSF46565 1 89 4.32E-28 T 11-10-2018 IPR036869 Chaperone J-domain superfamily AMK58_09105 4fcc52d826ebaa26430a588794c155b1 319 Pfam PF01556 DnaJ C terminal domain 145 290 5.2E-34 T 11-10-2018 IPR002939 Chaperone DnaJ, C-terminal AMK58_10450 b7a7065ee56cdedf9b387a21dda6f347 176 SMART SM00739 122 149 1.3E-5 T 11-10-2018 IPR005824 KOW AMK58_10450 b7a7065ee56cdedf9b387a21dda6f347 176 Gene3D G3DSA:3.30.70.940 1 116 3.9E-46 T 11-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AMK58_10450 b7a7065ee56cdedf9b387a21dda6f347 176 Pfam PF00467 KOW motif 125 155 4.3E-6 T 11-10-2018 IPR005824 KOW AMK58_10450 b7a7065ee56cdedf9b387a21dda6f347 176 Pfam PF02357 Transcription termination factor nusG 4 106 1.1E-28 T 11-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AMK58_10450 b7a7065ee56cdedf9b387a21dda6f347 176 PRINTS PR00338 Transcription termination factor NUSG signature 57 69 4.8E-21 T 11-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AMK58_10450 b7a7065ee56cdedf9b387a21dda6f347 176 PRINTS PR00338 Transcription termination factor NUSG signature 134 149 4.8E-21 T 11-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AMK58_10450 b7a7065ee56cdedf9b387a21dda6f347 176 PRINTS PR00338 Transcription termination factor NUSG signature 152 168 4.8E-21 T 11-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AMK58_10450 b7a7065ee56cdedf9b387a21dda6f347 176 SMART SM00738 2 110 2.7E-50 T 11-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AMK58_10450 b7a7065ee56cdedf9b387a21dda6f347 176 SUPERFAMILY SSF82679 4 112 5.89E-41 T 11-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AMK58_10450 b7a7065ee56cdedf9b387a21dda6f347 176 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 2 176 26.101 T 11-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AMK58_10450 b7a7065ee56cdedf9b387a21dda6f347 176 SUPERFAMILY SSF50104 120 176 2.78E-19 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily AMK58_10450 b7a7065ee56cdedf9b387a21dda6f347 176 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 5 176 1.2E-72 T 11-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AMK58_10450 b7a7065ee56cdedf9b387a21dda6f347 176 ProSitePatterns PS01014 Transcription termination factor nusG signature. 159 168 - T 11-10-2018 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site AMK58_10450 b7a7065ee56cdedf9b387a21dda6f347 176 Gene3D G3DSA:2.30.30.30 117 176 8.0E-27 T 11-10-2018 IPR014722 Ribosomal protein L2, domain 2 AMK58_08540 bb2f1845715a9ae4ce1a67cc9882bb25 110 Pfam PF05239 PRC-barrel domain 18 82 1.9E-11 T 11-10-2018 IPR027275 PRC-barrel domain AMK58_08540 bb2f1845715a9ae4ce1a67cc9882bb25 110 SUPERFAMILY SSF50346 14 97 8.44E-16 T 11-10-2018 IPR011033 PRC-barrel-like superfamily AMK58_08540 bb2f1845715a9ae4ce1a67cc9882bb25 110 Gene3D G3DSA:2.30.30.240 1 92 1.6E-20 T 11-10-2018 AMK58_07050 454a590f06065afecfdb39020015bf53 779 TIGRFAM TIGR02965 xanthine_xdhB: xanthine dehydrogenase, molybdopterin binding subunit 14 771 0.0 T 11-10-2018 IPR014309 Xanthine dehydrogenase, molybdopterin binding subunit GO:0030151 KEGG: 00230+1.17.1.4+1.17.3.2|KEGG: 00232+1.17.3.2|KEGG: 00983+1.17.3.2|MetaCyc: PWY-5497|MetaCyc: PWY-5695|MetaCyc: PWY-6538|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-6999 AMK58_07050 454a590f06065afecfdb39020015bf53 779 SUPERFAMILY SSF54665 12 136 3.4E-41 T 11-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily AMK58_07050 454a590f06065afecfdb39020015bf53 779 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 156 699 3.3E-197 T 11-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMK58_07050 454a590f06065afecfdb39020015bf53 779 SUPERFAMILY SSF56003 135 770 3.4E-198 T 11-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 AMK58_07050 454a590f06065afecfdb39020015bf53 779 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 28 135 3.2E-26 T 11-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMK58_07050 454a590f06065afecfdb39020015bf53 779 SMART SM01008 28 135 3.2E-46 T 11-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMK58_07050 454a590f06065afecfdb39020015bf53 779 Gene3D G3DSA:3.30.365.10 5 777 3.2E-280 T 11-10-2018 AMK58_05285 bb5882109ab573efe5f9a56df0cb8718 133 Pfam PF01814 Hemerythrin HHE cation binding domain 18 102 2.4E-7 T 11-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 AMK58_05285 bb5882109ab573efe5f9a56df0cb8718 133 Gene3D G3DSA:1.20.120.50 4 132 4.4E-20 T 11-10-2018 IPR035938 Hemerythrin-like superfamily AMK58_05285 bb5882109ab573efe5f9a56df0cb8718 133 SUPERFAMILY SSF47188 4 128 6.8E-25 T 11-10-2018 IPR035938 Hemerythrin-like superfamily AMK58_05285 bb5882109ab573efe5f9a56df0cb8718 133 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 8 128 3.5E-20 T 11-10-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 AMK58_08560 8bdeb9ca723345cb7b2bee6de8d42418 100 Gene3D G3DSA:1.10.150.250 13 98 7.0E-27 T 11-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily AMK58_08560 8bdeb9ca723345cb7b2bee6de8d42418 100 Pfam PF03937 Flavinator of succinate dehydrogenase 18 89 2.4E-27 T 11-10-2018 IPR005631 Flavinator of succinate dehydrogenase AMK58_08560 8bdeb9ca723345cb7b2bee6de8d42418 100 SUPERFAMILY SSF109910 12 91 3.4E-26 T 11-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily AMK58_22960 6835417374b087f525ff00fe0f5e6ceb 228 SMART SM00749 162 225 0.0012 T 11-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria AMK58_22960 6835417374b087f525ff00fe0f5e6ceb 228 Pfam PF00571 CBS domain 90 143 2.6E-11 T 11-10-2018 IPR000644 CBS domain AMK58_22960 6835417374b087f525ff00fe0f5e6ceb 228 Pfam PF00571 CBS domain 3 57 2.1E-15 T 11-10-2018 IPR000644 CBS domain AMK58_22960 6835417374b087f525ff00fe0f5e6ceb 228 Pfam PF04972 BON domain 158 220 4.4E-12 T 11-10-2018 IPR007055 BON domain AMK58_22960 6835417374b087f525ff00fe0f5e6ceb 228 PIRSF PIRSF036990 1 227 2.3E-72 T 11-10-2018 IPR017080 Uncharacterised conserved protein UCP036990, CBS, BON AMK58_22960 6835417374b087f525ff00fe0f5e6ceb 228 SMART SM00116 97 144 1.6E-6 T 11-10-2018 IPR000644 CBS domain AMK58_22960 6835417374b087f525ff00fe0f5e6ceb 228 SMART SM00116 10 58 1.9E-13 T 11-10-2018 IPR000644 CBS domain AMK58_22960 6835417374b087f525ff00fe0f5e6ceb 228 Gene3D G3DSA:3.10.580.10 1 151 1.9E-38 T 11-10-2018 AMK58_22960 6835417374b087f525ff00fe0f5e6ceb 228 SUPERFAMILY SSF54631 1 141 1.64E-34 T 11-10-2018 AMK58_05985 ee172697f0b3116c33d6a5b3eb773853 266 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 5 258 1.7E-99 T 11-10-2018 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMK58_05985 ee172697f0b3116c33d6a5b3eb773853 266 SUPERFAMILY SSF53613 3 261 3.12E-80 T 11-10-2018 IPR029056 Ribokinase-like AMK58_05985 ee172697f0b3116c33d6a5b3eb773853 266 Gene3D G3DSA:3.40.1190.20 2 264 1.6E-101 T 11-10-2018 IPR029056 Ribokinase-like AMK58_05985 ee172697f0b3116c33d6a5b3eb773853 266 Pfam PF08543 Phosphomethylpyrimidine kinase 12 257 8.5E-92 T 11-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 AMK58_28390 94100f6c681a596b8a5c456c08bfde12 215 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 4 185 2.5E-13 T 11-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain AMK58_28390 94100f6c681a596b8a5c456c08bfde12 215 Gene3D G3DSA:3.40.50.300 1 208 4.0E-35 T 11-10-2018 AMK58_28390 94100f6c681a596b8a5c456c08bfde12 215 SUPERFAMILY SSF52540 1 210 6.18E-29 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_28390 94100f6c681a596b8a5c456c08bfde12 215 PIRSF PIRSF009320 1 209 3.3E-30 T 11-10-2018 AMK58_15940 b1cace442cb60e8369dae9cee2db9102 140 SUPERFAMILY SSF54919 1 139 1.96E-54 T 11-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMK58_15940 b1cace442cb60e8369dae9cee2db9102 140 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 11-10-2018 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMK58_15940 b1cace442cb60e8369dae9cee2db9102 140 Gene3D G3DSA:3.30.70.141 1 138 8.7E-55 T 11-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMK58_15940 b1cace442cb60e8369dae9cee2db9102 140 SMART SM00562 3 140 3.5E-82 T 11-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMK58_15940 b1cace442cb60e8369dae9cee2db9102 140 Pfam PF00334 Nucleoside diphosphate kinase 4 135 7.1E-53 T 11-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMK58_15940 b1cace442cb60e8369dae9cee2db9102 140 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 34.954 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMK58_15940 b1cace442cb60e8369dae9cee2db9102 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 1.9E-37 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMK58_15940 b1cace442cb60e8369dae9cee2db9102 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 1.9E-37 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMK58_15940 b1cace442cb60e8369dae9cee2db9102 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 1.9E-37 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMK58_15940 b1cace442cb60e8369dae9cee2db9102 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 1.9E-37 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMK58_15940 b1cace442cb60e8369dae9cee2db9102 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 1.9E-37 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMK58_08965 b18b0bc158fe535658a4e3e6ceddf9d2 521 Pfam PF14326 Domain of unknown function (DUF4384) 387 465 7.4E-20 T 11-10-2018 IPR025493 Domain of unknown function DUF4384 AMK58_08965 b18b0bc158fe535658a4e3e6ceddf9d2 521 Gene3D G3DSA:1.10.101.10 269 337 3.3E-6 T 11-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 AMK58_08965 b18b0bc158fe535658a4e3e6ceddf9d2 521 Pfam PF01471 Putative peptidoglycan binding domain 281 335 4.4E-8 T 11-10-2018 IPR002477 Peptidoglycan binding-like AMK58_08965 b18b0bc158fe535658a4e3e6ceddf9d2 521 SUPERFAMILY SSF47090 280 336 8.32E-11 T 11-10-2018 IPR036365 PGBD-like superfamily AMK58_06230 57cada9439c23ad263dad1e136e399a4 229 SMART SM00382 34 222 9.7E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_06230 57cada9439c23ad263dad1e136e399a4 229 Pfam PF00005 ABC transporter 26 173 3.8E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_06230 57cada9439c23ad263dad1e136e399a4 229 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_06230 57cada9439c23ad263dad1e136e399a4 229 SUPERFAMILY SSF52540 5 227 4.03E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_06230 57cada9439c23ad263dad1e136e399a4 229 Gene3D G3DSA:3.40.50.300 4 229 2.3E-63 T 11-10-2018 AMK58_06860 81997ba99cb7d2530942b21890847d79 309 Gene3D G3DSA:3.40.800.20 1 308 1.1E-114 T 11-10-2018 IPR037138 Histone deacetylase domain superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AMK58_06860 81997ba99cb7d2530942b21890847d79 309 SUPERFAMILY SSF52768 1 307 3.02E-104 T 11-10-2018 IPR023696 Ureohydrolase domain superfamily AMK58_06860 81997ba99cb7d2530942b21890847d79 309 PRINTS PR01270 Histone deacetylase superfamily signature 155 170 1.9E-16 T 11-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AMK58_06860 81997ba99cb7d2530942b21890847d79 309 PRINTS PR01270 Histone deacetylase superfamily signature 121 144 1.9E-16 T 11-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AMK58_06860 81997ba99cb7d2530942b21890847d79 309 PRINTS PR01270 Histone deacetylase superfamily signature 236 246 1.9E-16 T 11-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AMK58_06860 81997ba99cb7d2530942b21890847d79 309 Pfam PF00850 Histone deacetylase domain 20 306 3.1E-85 T 11-10-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AMK58_27375 a870900d2c7813858be88d1e082550f6 321 SUPERFAMILY SSF53822 27 313 1.88E-76 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMK58_27375 a870900d2c7813858be88d1e082550f6 321 Gene3D G3DSA:3.40.50.2300 32 291 8.5E-110 T 11-10-2018 AMK58_27375 a870900d2c7813858be88d1e082550f6 321 Pfam PF13407 Periplasmic binding protein domain 33 279 1.3E-46 T 11-10-2018 IPR025997 Periplasmic binding protein AMK58_27375 a870900d2c7813858be88d1e082550f6 321 Gene3D G3DSA:3.40.50.2300 133 273 8.5E-110 T 11-10-2018 AMK58_20325 3203a97e3601471d702bf454ae7b1ba1 144 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 4 130 1.8E-4 T 11-10-2018 IPR028973 PhnB-like AMK58_20325 3203a97e3601471d702bf454ae7b1ba1 144 SUPERFAMILY SSF54593 3 133 2.89E-27 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMK58_20325 3203a97e3601471d702bf454ae7b1ba1 144 Gene3D G3DSA:3.10.180.10 7 140 1.2E-35 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMK58_25990 c2029487ab938b1c9656b45be242efcb 272 Pfam PF00005 ABC transporter 35 193 2.9E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_25990 c2029487ab938b1c9656b45be242efcb 272 SUPERFAMILY SSF52540 16 264 3.35E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_25990 c2029487ab938b1c9656b45be242efcb 272 ProSitePatterns PS00211 ABC transporters family signature. 166 180 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_25990 c2029487ab938b1c9656b45be242efcb 272 SMART SM00382 42 242 1.1E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_25990 c2029487ab938b1c9656b45be242efcb 272 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 242 264 6.6E-11 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AMK58_25990 c2029487ab938b1c9656b45be242efcb 272 Gene3D G3DSA:3.40.50.300 16 269 1.1E-61 T 11-10-2018 AMK58_14000 3efdab120ced961661af4729be4b074d 574 Gene3D G3DSA:3.40.50.300 340 573 6.3E-42 T 11-10-2018 AMK58_14000 3efdab120ced961661af4729be4b074d 574 SUPERFAMILY SSF52540 342 550 2.17E-45 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_14000 3efdab120ced961661af4729be4b074d 574 Pfam PF00005 ABC transporter 366 500 1.3E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_14000 3efdab120ced961661af4729be4b074d 574 Gene3D G3DSA:1.20.1560.10 130 324 9.8E-6 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMK58_14000 3efdab120ced961661af4729be4b074d 574 ProSitePatterns PS00211 ABC transporters family signature. 472 486 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_14000 3efdab120ced961661af4729be4b074d 574 SUPERFAMILY SSF90123 35 315 1.83E-9 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMK58_14000 3efdab120ced961661af4729be4b074d 574 SMART SM00382 372 548 7.9E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_14990 0d3329d5041ea210ee2961998a37ea12 233 Gene3D G3DSA:3.40.30.10 1 90 1.1E-30 T 11-10-2018 AMK58_14990 0d3329d5041ea210ee2961998a37ea12 233 SUPERFAMILY SSF52833 1 84 1.92E-22 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_14990 0d3329d5041ea210ee2961998a37ea12 233 Gene3D G3DSA:1.20.1050.10 91 224 5.2E-48 T 11-10-2018 AMK58_14990 0d3329d5041ea210ee2961998a37ea12 233 SUPERFAMILY SSF47616 78 206 1.36E-37 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMK58_14990 0d3329d5041ea210ee2961998a37ea12 233 Pfam PF02798 Glutathione S-transferase, N-terminal domain 5 81 4.7E-13 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMK58_14990 0d3329d5041ea210ee2961998a37ea12 233 Pfam PF00043 Glutathione S-transferase, C-terminal domain 131 197 6.3E-12 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal AMK58_28090 ad7a6c119bdaa0ce3ef90588f26ed160 214 SUPERFAMILY SSF48695 65 135 3.43E-6 T 11-10-2018 IPR036280 Multiheme cytochrome superfamily AMK58_28035 5ff4045e9e63535b6cb68e60329e8537 294 SUPERFAMILY SSF53850 94 293 1.99E-34 T 11-10-2018 AMK58_28035 5ff4045e9e63535b6cb68e60329e8537 294 Gene3D G3DSA:3.40.190.10 162 260 6.1E-60 T 11-10-2018 AMK58_28035 5ff4045e9e63535b6cb68e60329e8537 294 Gene3D G3DSA:1.10.10.10 6 94 3.6E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_28035 5ff4045e9e63535b6cb68e60329e8537 294 Gene3D G3DSA:3.40.190.10 102 288 6.1E-60 T 11-10-2018 AMK58_28035 5ff4045e9e63535b6cb68e60329e8537 294 SUPERFAMILY SSF46785 3 85 2.3E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_28035 5ff4045e9e63535b6cb68e60329e8537 294 Pfam PF03466 LysR substrate binding domain 94 291 1.2E-34 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_28035 5ff4045e9e63535b6cb68e60329e8537 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 1.3E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_28035 5ff4045e9e63535b6cb68e60329e8537 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 9.4E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_28035 5ff4045e9e63535b6cb68e60329e8537 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 9.4E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_28035 5ff4045e9e63535b6cb68e60329e8537 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 9.4E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_06315 a8da05a07b7851ae5e93bc977559899d 280 Pfam PF06230 Protein of unknown function (DUF1009) 60 270 3.1E-75 T 11-10-2018 IPR010415 Protein of unknown function DUF1009 KEGG: 00540+3.6.1.54 AMK58_06315 a8da05a07b7851ae5e93bc977559899d 280 Gene3D G3DSA:3.40.50.20 4 133 1.4E-40 T 11-10-2018 AMK58_06315 a8da05a07b7851ae5e93bc977559899d 280 Gene3D G3DSA:3.40.140.80 134 277 1.7E-53 T 11-10-2018 AMK58_04550 6421b648c2ec4e0cbf3e9a491e8d976e 433 SUPERFAMILY SSF54373 182 285 1.18E-23 T 11-10-2018 AMK58_04550 6421b648c2ec4e0cbf3e9a491e8d976e 433 SUPERFAMILY SSF51905 2 384 3.5E-47 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_04550 6421b648c2ec4e0cbf3e9a491e8d976e 433 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 296 311 9.3E-9 T 11-10-2018 AMK58_04550 6421b648c2ec4e0cbf3e9a491e8d976e 433 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 9.3E-9 T 11-10-2018 AMK58_04550 6421b648c2ec4e0cbf3e9a491e8d976e 433 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 154 169 9.3E-9 T 11-10-2018 AMK58_04550 6421b648c2ec4e0cbf3e9a491e8d976e 433 Pfam PF01494 FAD binding domain 5 192 2.7E-7 T 11-10-2018 IPR002938 FAD-binding domain GO:0071949 AMK58_04550 6421b648c2ec4e0cbf3e9a491e8d976e 433 Gene3D G3DSA:3.50.50.60 5 365 9.0E-67 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_04550 6421b648c2ec4e0cbf3e9a491e8d976e 433 Gene3D G3DSA:3.30.9.90 69 400 9.0E-67 T 11-10-2018 AMK58_27585 e56474da30c06ca86a8b01ec3e6f99df 329 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 40 280 1.7E-70 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 AMK58_27585 e56474da30c06ca86a8b01ec3e6f99df 329 PIRSF PIRSF006470 1 328 9.4E-97 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 AMK58_27585 e56474da30c06ca86a8b01ec3e6f99df 329 SUPERFAMILY SSF53850 133 227 3.17E-6 T 11-10-2018 AMK58_27585 e56474da30c06ca86a8b01ec3e6f99df 329 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 35 313 3.0E-88 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 AMK58_27585 e56474da30c06ca86a8b01ec3e6f99df 329 Gene3D G3DSA:3.40.190.170 29 329 2.5E-116 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily AMK58_11750 32791190a83c340840912303f28da517 296 PIRSF PIRSF039089 1 296 1.4E-107 T 11-10-2018 AMK58_11750 32791190a83c340840912303f28da517 296 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 296 1.1E-107 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_11750 32791190a83c340840912303f28da517 296 Gene3D G3DSA:3.40.1380.10 61 215 1.3E-96 T 11-10-2018 AMK58_11750 32791190a83c340840912303f28da517 296 SUPERFAMILY SSF52943 2 296 3.92E-90 T 11-10-2018 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_11750 32791190a83c340840912303f28da517 296 Gene3D G3DSA:1.10.287.80 6 292 1.3E-96 T 11-10-2018 AMK58_11750 32791190a83c340840912303f28da517 296 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 296 33.568 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_11750 32791190a83c340840912303f28da517 296 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 282 295 - T 11-10-2018 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_11750 32791190a83c340840912303f28da517 296 Pfam PF00231 ATP synthase 3 295 5.7E-99 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_11750 32791190a83c340840912303f28da517 296 PRINTS PR00126 ATP synthase gamma subunit signature 171 188 4.9E-33 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_11750 32791190a83c340840912303f28da517 296 PRINTS PR00126 ATP synthase gamma subunit signature 274 295 4.9E-33 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_11750 32791190a83c340840912303f28da517 296 PRINTS PR00126 ATP synthase gamma subunit signature 76 95 4.9E-33 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_11750 32791190a83c340840912303f28da517 296 PRINTS PR00126 ATP synthase gamma subunit signature 243 262 4.9E-33 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_09540 4e4ef5fbafd06a69186b271f50c29ed3 691 Pfam PF06082 Exopolysaccharide biosynthesis protein YbjH 25 672 2.6E-171 T 11-10-2018 IPR010344 Exopolysaccharide biosynthesis protein YbjH AMK58_04425 027d8d2d054ae50b163f796701f1b3c3 131 Pfam PF03776 Septum formation topological specificity factor MinE 14 81 2.1E-24 T 11-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 AMK58_04425 027d8d2d054ae50b163f796701f1b3c3 131 Hamap MF_00262 Cell division topological specificity factor [minE]. 3 84 18.0 T 11-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 AMK58_04425 027d8d2d054ae50b163f796701f1b3c3 131 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 1 81 2.8E-27 T 11-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 AMK58_04425 027d8d2d054ae50b163f796701f1b3c3 131 Gene3D G3DSA:3.30.1070.10 20 79 2.3E-25 T 11-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 AMK58_04425 027d8d2d054ae50b163f796701f1b3c3 131 SUPERFAMILY SSF55229 33 84 7.19E-16 T 11-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 AMK58_16750 5bc5c1a6d9d09de39b250db8bb0ce397 468 Gene3D G3DSA:3.30.499.20 9 288 6.4E-89 T 11-10-2018 AMK58_16750 5bc5c1a6d9d09de39b250db8bb0ce397 468 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 4 466 52.253 T 11-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 AMK58_16750 5bc5c1a6d9d09de39b250db8bb0ce397 468 PRINTS PR00415 Aconitase family signature 211 224 2.0E-44 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMK58_16750 5bc5c1a6d9d09de39b250db8bb0ce397 468 PRINTS PR00415 Aconitase family signature 399 412 2.0E-44 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMK58_16750 5bc5c1a6d9d09de39b250db8bb0ce397 468 PRINTS PR00415 Aconitase family signature 110 118 2.0E-44 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMK58_16750 5bc5c1a6d9d09de39b250db8bb0ce397 468 PRINTS PR00415 Aconitase family signature 197 210 2.0E-44 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMK58_16750 5bc5c1a6d9d09de39b250db8bb0ce397 468 PRINTS PR00415 Aconitase family signature 121 134 2.0E-44 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMK58_16750 5bc5c1a6d9d09de39b250db8bb0ce397 468 PRINTS PR00415 Aconitase family signature 288 302 2.0E-44 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMK58_16750 5bc5c1a6d9d09de39b250db8bb0ce397 468 PRINTS PR00415 Aconitase family signature 345 356 2.0E-44 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMK58_16750 5bc5c1a6d9d09de39b250db8bb0ce397 468 PRINTS PR00415 Aconitase family signature 135 150 2.0E-44 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMK58_16750 5bc5c1a6d9d09de39b250db8bb0ce397 468 Pfam PF00330 Aconitase family (aconitate hydratase) 10 457 1.7E-138 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMK58_16750 5bc5c1a6d9d09de39b250db8bb0ce397 468 ProSitePatterns PS01244 Aconitase family signature 2. 399 412 - T 11-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AMK58_16750 5bc5c1a6d9d09de39b250db8bb0ce397 468 Gene3D G3DSA:3.30.499.10 328 468 2.9E-47 T 11-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 AMK58_16750 5bc5c1a6d9d09de39b250db8bb0ce397 468 ProSitePatterns PS00450 Aconitase family signature 1. 341 357 - T 11-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AMK58_16750 5bc5c1a6d9d09de39b250db8bb0ce397 468 SUPERFAMILY SSF53732 4 465 9.42E-152 T 11-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 AMK58_16750 5bc5c1a6d9d09de39b250db8bb0ce397 468 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 5 465 8.5E-200 T 11-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 AMK58_11695 934b769bfdbf2da39ffd7124ae653bd6 205 SUPERFAMILY SSF52374 16 204 2.94E-38 T 11-10-2018 AMK58_11695 934b769bfdbf2da39ffd7124ae653bd6 205 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 16 204 20.279 T 11-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 AMK58_11695 934b769bfdbf2da39ffd7124ae653bd6 205 Pfam PF01467 Cytidylyltransferase-like 20 200 2.2E-18 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AMK58_11695 934b769bfdbf2da39ffd7124ae653bd6 205 Gene3D G3DSA:3.40.50.620 15 205 2.1E-40 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_11695 934b769bfdbf2da39ffd7124ae653bd6 205 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 20 203 2.9E-34 T 11-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 AMK58_02150 7b55a6b05b7f1157715917e6018fa7e2 323 Gene3D G3DSA:3.40.190.150 28 306 3.0E-82 T 11-10-2018 AMK58_02150 7b55a6b05b7f1157715917e6018fa7e2 323 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 48 287 3.0E-49 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 AMK58_02150 7b55a6b05b7f1157715917e6018fa7e2 323 PIRSF PIRSF017082 1 323 8.6E-91 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 AMK58_02150 7b55a6b05b7f1157715917e6018fa7e2 323 Gene3D G3DSA:3.40.190.10 126 249 3.0E-82 T 11-10-2018 AMK58_14825 2d1ee7b933aebb62b5fe2882273d90d5 688 SUPERFAMILY SSF64518 214 687 8.11E-12 T 11-10-2018 AMK58_14825 2d1ee7b933aebb62b5fe2882273d90d5 688 SUPERFAMILY SSF64518 7 209 6.54E-11 T 11-10-2018 AMK58_25860 6af9962ff031cc21a2768a1b3843f650 226 SUPERFAMILY SSF46894 150 214 2.89E-19 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMK58_25860 6af9962ff031cc21a2768a1b3843f650 226 SUPERFAMILY SSF52172 1 121 4.39E-11 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_25860 6af9962ff031cc21a2768a1b3843f650 226 Gene3D G3DSA:3.40.50.12740 4 214 1.0E-41 T 11-10-2018 AMK58_25860 6af9962ff031cc21a2768a1b3843f650 226 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 169 8.9E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_25860 6af9962ff031cc21a2768a1b3843f650 226 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 185 197 8.9E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_25860 6af9962ff031cc21a2768a1b3843f650 226 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 169 185 8.9E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_25860 6af9962ff031cc21a2768a1b3843f650 226 Pfam PF00072 Response regulator receiver domain 6 117 3.2E-8 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_25860 6af9962ff031cc21a2768a1b3843f650 226 Pfam PF00196 Bacterial regulatory proteins, luxR family 154 209 4.6E-20 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_25860 6af9962ff031cc21a2768a1b3843f650 226 ProSitePatterns PS00622 LuxR-type HTH domain signature. 169 196 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_25860 6af9962ff031cc21a2768a1b3843f650 226 SMART SM00421 152 209 6.5E-23 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_07885 52bc3b877d0b2dc72d64fb623b6747af 91 Pfam PF00216 Bacterial DNA-binding protein 1 90 7.3E-32 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMK58_07885 52bc3b877d0b2dc72d64fb623b6747af 91 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 11-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 AMK58_07885 52bc3b877d0b2dc72d64fb623b6747af 91 SUPERFAMILY SSF47729 1 90 7.65E-30 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 AMK58_07885 52bc3b877d0b2dc72d64fb623b6747af 91 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 6.5E-16 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMK58_07885 52bc3b877d0b2dc72d64fb623b6747af 91 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 6.5E-16 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMK58_07885 52bc3b877d0b2dc72d64fb623b6747af 91 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 6.5E-16 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMK58_07885 52bc3b877d0b2dc72d64fb623b6747af 91 SMART SM00411 1 90 1.1E-38 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMK58_07885 52bc3b877d0b2dc72d64fb623b6747af 91 Gene3D G3DSA:4.10.520.10 1 91 2.0E-33 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 AMK58_27730 f686169fe439c84c5d22659bdf88d365 423 PIRSF PIRSF006066 1 423 5.2E-103 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 AMK58_27730 f686169fe439c84c5d22659bdf88d365 423 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 421 5.9E-95 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 AMK58_27730 f686169fe439c84c5d22659bdf88d365 423 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 417 9.4E-92 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit AMK58_14710 e12eb2b182b428baa952d978a7843666 312 Gene3D G3DSA:3.40.50.1220 184 312 4.8E-60 T 11-10-2018 AMK58_14710 e12eb2b182b428baa952d978a7843666 312 Pfam PF01012 Electron transfer flavoprotein domain 4 167 3.3E-41 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AMK58_14710 e12eb2b182b428baa952d978a7843666 312 SMART SM00893 3 182 9.5E-55 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AMK58_14710 e12eb2b182b428baa952d978a7843666 312 SUPERFAMILY SSF52467 187 309 1.03E-49 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AMK58_14710 e12eb2b182b428baa952d978a7843666 312 PIRSF PIRSF000089 1 312 3.0E-110 T 11-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 AMK58_14710 e12eb2b182b428baa952d978a7843666 312 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 253 279 - T 11-10-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 AMK58_14710 e12eb2b182b428baa952d978a7843666 312 Gene3D G3DSA:3.40.50.620 2 183 3.0E-57 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_14710 e12eb2b182b428baa952d978a7843666 312 SUPERFAMILY SSF52402 2 184 2.18E-57 T 11-10-2018 AMK58_14710 e12eb2b182b428baa952d978a7843666 312 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 190 272 5.7E-38 T 11-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 AMK58_02845 d6226ca9d3e23ca736034ad930e28e65 105 Pfam PF13586 Transposase DDE domain 20 102 1.9E-19 T 11-10-2018 IPR025668 Transposase DDE domain AMK58_11480 f4271baa4f249a20e3931cf7391d6ba8 204 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 5 204 6.2E-75 T 11-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 AMK58_11480 f4271baa4f249a20e3931cf7391d6ba8 204 Pfam PF01479 S4 domain 93 140 3.4E-17 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_11480 f4271baa4f249a20e3931cf7391d6ba8 204 SMART SM01390 3 92 2.4E-40 T 11-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 AMK58_11480 f4271baa4f249a20e3931cf7391d6ba8 204 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 204 32.966 T 11-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 AMK58_11480 f4271baa4f249a20e3931cf7391d6ba8 204 SUPERFAMILY SSF55174 7 204 2.62E-62 T 11-10-2018 AMK58_11480 f4271baa4f249a20e3931cf7391d6ba8 204 Gene3D G3DSA:3.10.290.10 92 187 4.8E-69 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AMK58_11480 f4271baa4f249a20e3931cf7391d6ba8 204 ProSitePatterns PS00632 Ribosomal protein S4 signature. 91 115 - T 11-10-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_11480 f4271baa4f249a20e3931cf7391d6ba8 204 Gene3D G3DSA:1.10.1050.10 7 204 4.8E-69 T 11-10-2018 AMK58_11480 f4271baa4f249a20e3931cf7391d6ba8 204 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 5 92 8.3E-27 T 11-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 AMK58_11480 f4271baa4f249a20e3931cf7391d6ba8 204 SMART SM00363 93 157 2.7E-16 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_01005 f7b3aa3c61a655e2794e759ed5c6112a 174 Pfam PF05751 FixH 22 171 1.1E-32 T 11-10-2018 IPR008620 Nitrogen fixation protein FixH AMK58_07420 45e56b6b076a6fe0ed8d6ab2cce623bd 291 PRINTS PR00146 Dihydrodipicolinate synthase signature 34 55 1.3E-36 T 11-10-2018 IPR002220 DapA-like GO:0016829 AMK58_07420 45e56b6b076a6fe0ed8d6ab2cce623bd 291 PRINTS PR00146 Dihydrodipicolinate synthase signature 70 88 1.3E-36 T 11-10-2018 IPR002220 DapA-like GO:0016829 AMK58_07420 45e56b6b076a6fe0ed8d6ab2cce623bd 291 PRINTS PR00146 Dihydrodipicolinate synthase signature 127 144 1.3E-36 T 11-10-2018 IPR002220 DapA-like GO:0016829 AMK58_07420 45e56b6b076a6fe0ed8d6ab2cce623bd 291 PRINTS PR00146 Dihydrodipicolinate synthase signature 102 118 1.3E-36 T 11-10-2018 IPR002220 DapA-like GO:0016829 AMK58_07420 45e56b6b076a6fe0ed8d6ab2cce623bd 291 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 132 162 - T 11-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 AMK58_07420 45e56b6b076a6fe0ed8d6ab2cce623bd 291 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 1 286 66.329 T 11-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMK58_07420 45e56b6b076a6fe0ed8d6ab2cce623bd 291 Gene3D G3DSA:3.20.20.70 1 290 8.0E-113 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_07420 45e56b6b076a6fe0ed8d6ab2cce623bd 291 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 4 286 4.2E-102 T 11-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMK58_07420 45e56b6b076a6fe0ed8d6ab2cce623bd 291 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 37 54 - T 11-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMK58_07420 45e56b6b076a6fe0ed8d6ab2cce623bd 291 PIRSF PIRSF001365 1 291 5.2E-92 T 11-10-2018 IPR002220 DapA-like GO:0016829 AMK58_07420 45e56b6b076a6fe0ed8d6ab2cce623bd 291 SMART SM01130 1 288 1.5E-147 T 11-10-2018 IPR002220 DapA-like GO:0016829 AMK58_07420 45e56b6b076a6fe0ed8d6ab2cce623bd 291 Pfam PF00701 Dihydrodipicolinate synthetase family 3 286 1.1E-96 T 11-10-2018 IPR002220 DapA-like GO:0016829 AMK58_07420 45e56b6b076a6fe0ed8d6ab2cce623bd 291 SUPERFAMILY SSF51569 2 288 8.37E-107 T 11-10-2018 AMK58_00670 1362bea34e07a0120dcb22afa0d14890 225 SUPERFAMILY SSF53067 1 100 2.37E-26 T 11-10-2018 AMK58_00670 1362bea34e07a0120dcb22afa0d14890 225 Gene3D G3DSA:3.30.420.40 3 214 5.3E-43 T 11-10-2018 AMK58_00670 1362bea34e07a0120dcb22afa0d14890 225 Pfam PF00814 Glycoprotease family 32 123 3.8E-20 T 11-10-2018 IPR000905 Gcp-like domain AMK58_00670 1362bea34e07a0120dcb22afa0d14890 225 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 3 214 2.4E-46 T 11-10-2018 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 AMK58_00670 1362bea34e07a0120dcb22afa0d14890 225 Gene3D G3DSA:3.30.420.40 95 189 5.3E-43 T 11-10-2018 AMK58_00670 1362bea34e07a0120dcb22afa0d14890 225 SUPERFAMILY SSF53067 112 203 1.13E-6 T 11-10-2018 AMK58_07950 63b45e15684841f64eafaddc95fa02e0 175 Gene3D G3DSA:2.20.25.120 47 80 2.0E-55 T 11-10-2018 AMK58_07950 63b45e15684841f64eafaddc95fa02e0 175 Pfam PF03205 Molybdopterin guanine dinucleotide synthesis protein B 4 136 1.3E-51 T 11-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 AMK58_07950 63b45e15684841f64eafaddc95fa02e0 175 Gene3D G3DSA:3.40.50.300 5 159 2.0E-55 T 11-10-2018 AMK58_07950 63b45e15684841f64eafaddc95fa02e0 175 TIGRFAM TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B 4 161 5.0E-47 T 11-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 AMK58_07950 63b45e15684841f64eafaddc95fa02e0 175 SUPERFAMILY SSF52540 1 163 3.15E-27 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_11960 03f881f1a4d87615ef95c071c45a413c 146 PRINTS PR00598 Bacterial regulatory protein MarR family signature 61 76 7.2E-7 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_11960 03f881f1a4d87615ef95c071c45a413c 146 PRINTS PR00598 Bacterial regulatory protein MarR family signature 44 60 7.2E-7 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_11960 03f881f1a4d87615ef95c071c45a413c 146 PRINTS PR00598 Bacterial regulatory protein MarR family signature 80 96 7.2E-7 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_11960 03f881f1a4d87615ef95c071c45a413c 146 Gene3D G3DSA:1.10.10.10 5 136 4.7E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_11960 03f881f1a4d87615ef95c071c45a413c 146 Pfam PF01047 MarR family 26 85 2.2E-13 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_11960 03f881f1a4d87615ef95c071c45a413c 146 SMART SM00347 19 123 4.5E-7 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_11960 03f881f1a4d87615ef95c071c45a413c 146 SUPERFAMILY SSF46785 23 111 1.67E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_21215 87dd1c98d315e06eb21a72892e3c57bb 574 Pfam PF04724 Glycosyltransferase family 17 292 413 9.8E-30 T 11-10-2018 IPR006813 Glycosyl transferase, family 17 GO:0003830|GO:0006487|GO:0016020 KEGG: 00510+2.4.1.144|MetaCyc: PWY-7426|Reactome: R-HSA-975574 AMK58_17050 c8f0636cd2d3c520ec5de04df32c0eb0 111 TIGRFAM TIGR02222 chap_CsaA: export-related chaperone protein CsaA 5 110 7.7E-46 T 11-10-2018 IPR008231 Probable chaperone CsaA AMK58_17050 c8f0636cd2d3c520ec5de04df32c0eb0 111 Pfam PF01588 Putative tRNA binding domain 13 107 1.7E-13 T 11-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 AMK58_17050 c8f0636cd2d3c520ec5de04df32c0eb0 111 Gene3D G3DSA:2.40.50.140 1 111 4.4E-34 T 11-10-2018 AMK58_17050 c8f0636cd2d3c520ec5de04df32c0eb0 111 SUPERFAMILY SSF50249 2 110 1.1E-32 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_15475 b5b411d0bc438004035bf87d8c0052a5 157 Pfam PF00588 SpoU rRNA Methylase family 2 138 3.1E-26 T 11-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AMK58_15475 b5b411d0bc438004035bf87d8c0052a5 157 Gene3D G3DSA:3.40.1280.10 1 151 1.1E-46 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMK58_15475 b5b411d0bc438004035bf87d8c0052a5 157 SUPERFAMILY SSF75217 2 145 5.62E-37 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases AMK58_15475 b5b411d0bc438004035bf87d8c0052a5 157 PIRSF PIRSF029256 1 150 2.5E-49 T 11-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 AMK58_15475 b5b411d0bc438004035bf87d8c0052a5 157 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 1 148 29.384 T 11-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 AMK58_28010 b4ee11ad07caadedbf2c53e5fd09d89c 267 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 108 128 - T 11-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 AMK58_28010 b4ee11ad07caadedbf2c53e5fd09d89c 267 SUPERFAMILY SSF52096 3 265 1.76E-74 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMK58_28010 b4ee11ad07caadedbf2c53e5fd09d89c 267 Gene3D G3DSA:1.10.12.10 209 267 6.9E-15 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal AMK58_28010 b4ee11ad07caadedbf2c53e5fd09d89c 267 Gene3D G3DSA:3.90.226.10 1 208 4.1E-63 T 11-10-2018 AMK58_28010 b4ee11ad07caadedbf2c53e5fd09d89c 267 Pfam PF00378 Enoyl-CoA hydratase/isomerase 9 265 6.4E-55 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMK58_19785 c01e5c861923424c4edff5a431971485 210 Gene3D G3DSA:2.30.30.40 22 91 3.9E-12 T 11-10-2018 AMK58_19785 c01e5c861923424c4edff5a431971485 210 Pfam PF08239 Bacterial SH3 domain 37 87 1.3E-9 T 11-10-2018 IPR003646 SH3-like domain, bacterial-type AMK58_19785 c01e5c861923424c4edff5a431971485 210 SMART SM00287 27 90 0.0037 T 11-10-2018 IPR003646 SH3-like domain, bacterial-type AMK58_23130 26f9616a21c6dc9a637129e14a44a834 401 Pfam PF00425 chorismate binding enzyme 120 375 1.3E-71 T 11-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal AMK58_23130 26f9616a21c6dc9a637129e14a44a834 401 SUPERFAMILY SSF56322 48 385 1.96E-89 T 11-10-2018 IPR005801 ADC synthase GO:0009058 AMK58_23130 26f9616a21c6dc9a637129e14a44a834 401 Gene3D G3DSA:3.60.120.10 14 386 3.2E-117 T 11-10-2018 IPR005801 ADC synthase GO:0009058 AMK58_23130 26f9616a21c6dc9a637129e14a44a834 401 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 115 382 9.6E-84 T 11-10-2018 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 AMK58_22920 a38bf7b8d402d090c28b769d3a05b475 480 Pfam PF00392 Bacterial regulatory proteins, gntR family 23 84 4.7E-16 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_22920 a38bf7b8d402d090c28b769d3a05b475 480 SUPERFAMILY SSF46785 14 86 9.69E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_22920 a38bf7b8d402d090c28b769d3a05b475 480 SMART SM00345 25 84 5.0E-16 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_22920 a38bf7b8d402d090c28b769d3a05b475 480 Pfam PF00155 Aminotransferase class I and II 146 466 8.7E-26 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMK58_22920 a38bf7b8d402d090c28b769d3a05b475 480 Gene3D G3DSA:1.10.10.10 18 98 7.9E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_22920 a38bf7b8d402d090c28b769d3a05b475 480 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 44 58 2.3E-6 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_22920 a38bf7b8d402d090c28b769d3a05b475 480 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 58 74 2.3E-6 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_22920 a38bf7b8d402d090c28b769d3a05b475 480 SUPERFAMILY SSF53383 79 473 2.86E-91 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_22920 a38bf7b8d402d090c28b769d3a05b475 480 Gene3D G3DSA:3.40.640.10 109 467 5.3E-114 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_19745 e0dddd62cf199185959c0bf4e6c47ad0 314 Gene3D G3DSA:1.10.10.10 11 99 9.0E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_19745 e0dddd62cf199185959c0bf4e6c47ad0 314 Gene3D G3DSA:3.40.190.10 101 300 5.5E-52 T 11-10-2018 AMK58_19745 e0dddd62cf199185959c0bf4e6c47ad0 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 39 6.1E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_19745 e0dddd62cf199185959c0bf4e6c47ad0 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 49 6.1E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_19745 e0dddd62cf199185959c0bf4e6c47ad0 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 49 60 6.1E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_19745 e0dddd62cf199185959c0bf4e6c47ad0 314 SUPERFAMILY SSF53850 100 305 2.35E-37 T 11-10-2018 AMK58_19745 e0dddd62cf199185959c0bf4e6c47ad0 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 72 8.0E-20 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_19745 e0dddd62cf199185959c0bf4e6c47ad0 314 Pfam PF03466 LysR substrate binding domain 98 302 8.4E-35 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_19745 e0dddd62cf199185959c0bf4e6c47ad0 314 Gene3D G3DSA:3.40.190.10 172 273 5.5E-52 T 11-10-2018 AMK58_19745 e0dddd62cf199185959c0bf4e6c47ad0 314 SUPERFAMILY SSF46785 11 118 3.19E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_17375 44f6c8c367a4bdf82eb1dcafffdfd180 249 Pfam PF01925 Sulfite exporter TauE/SafE 13 242 1.6E-27 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 AMK58_22785 60dc9d32e66e9722405672194598a6c6 269 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 38 264 7.8E-41 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMK58_22785 60dc9d32e66e9722405672194598a6c6 269 SMART SM00062 37 267 1.2E-32 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMK58_22785 60dc9d32e66e9722405672194598a6c6 269 Gene3D G3DSA:3.40.190.10 43 263 9.9E-43 T 11-10-2018 AMK58_22785 60dc9d32e66e9722405672194598a6c6 269 Gene3D G3DSA:3.40.190.10 123 224 9.9E-43 T 11-10-2018 AMK58_22785 60dc9d32e66e9722405672194598a6c6 269 SUPERFAMILY SSF53850 38 268 2.26E-46 T 11-10-2018 AMK58_02685 4a2eb60a15f3858ae1ef9e7e83ac8f34 258 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 80 88 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AMK58_02685 4a2eb60a15f3858ae1ef9e7e83ac8f34 258 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 170 181 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMK58_02685 4a2eb60a15f3858ae1ef9e7e83ac8f34 258 Gene3D G3DSA:1.10.1060.10 129 258 1.0E-57 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AMK58_02685 4a2eb60a15f3858ae1ef9e7e83ac8f34 258 SUPERFAMILY SSF46548 130 257 1.92E-37 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AMK58_02685 4a2eb60a15f3858ae1ef9e7e83ac8f34 258 Gene3D G3DSA:3.10.20.30 17 128 1.4E-43 T 11-10-2018 IPR012675 Beta-grasp domain superfamily AMK58_02685 4a2eb60a15f3858ae1ef9e7e83ac8f34 258 Pfam PF13534 4Fe-4S dicluster domain 169 242 4.7E-9 T 11-10-2018 AMK58_02685 4a2eb60a15f3858ae1ef9e7e83ac8f34 258 SUPERFAMILY SSF54292 27 128 1.48E-31 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMK58_02685 4a2eb60a15f3858ae1ef9e7e83ac8f34 258 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 29 133 8.2E-32 T 11-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMK58_02685 4a2eb60a15f3858ae1ef9e7e83ac8f34 258 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 32 251 2.1E-81 T 11-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMK58_04420 eeee21cf6f5ea3b572d1b45e6188d20c 271 SUPERFAMILY SSF52540 3 267 1.01E-51 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_04420 eeee21cf6f5ea3b572d1b45e6188d20c 271 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 3 267 6.3E-108 T 11-10-2018 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 AMK58_04420 eeee21cf6f5ea3b572d1b45e6188d20c 271 Gene3D G3DSA:3.40.50.300 1 259 1.6E-69 T 11-10-2018 AMK58_04420 eeee21cf6f5ea3b572d1b45e6188d20c 271 Pfam PF13614 AAA domain 2 165 6.8E-21 T 11-10-2018 IPR025669 AAA domain AMK58_04420 eeee21cf6f5ea3b572d1b45e6188d20c 271 PIRSF PIRSF003092 1 271 4.8E-87 T 11-10-2018 IPR025501 ATP binding protein MinD AMK58_15155 7c4e5b628dd48484ae64c76676d44bfb 156 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 19 144 2.7E-29 T 11-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ AMK58_10035 ef501535687742689fe42ba99b12d561 358 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 229 246 7.2E-43 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AMK58_10035 ef501535687742689fe42ba99b12d561 358 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 273 288 7.2E-43 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AMK58_10035 ef501535687742689fe42ba99b12d561 358 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 303 324 7.2E-43 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AMK58_10035 ef501535687742689fe42ba99b12d561 358 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 209 227 7.2E-43 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AMK58_10035 ef501535687742689fe42ba99b12d561 358 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 11 33 7.2E-43 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AMK58_10035 ef501535687742689fe42ba99b12d561 358 Gene3D G3DSA:3.40.1690.10 219 357 7.7E-60 T 11-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal AMK58_10035 ef501535687742689fe42ba99b12d561 358 Pfam PF01312 FlhB HrpN YscU SpaS Family 9 348 4.7E-121 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AMK58_10035 ef501535687742689fe42ba99b12d561 358 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 9 353 3.3E-119 T 11-10-2018 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 AMK58_10035 ef501535687742689fe42ba99b12d561 358 SUPERFAMILY SSF160544 245 352 6.67E-43 T 11-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal AMK58_23925 6ed34fe2ea0cb2cb5a5a0e3a5d5bcb28 304 Pfam PF02653 Branched-chain amino acid transport system / permease component 11 289 6.0E-42 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_07870 027cc011c172b8d0485b754d6bce6fe6 376 Pfam PF04230 Polysaccharide pyruvyl transferase 14 297 3.1E-39 T 11-10-2018 IPR007345 Polysaccharide pyruvyl transferase AMK58_21810 2216ae88fe9c11470a7aeac5abde29c2 104 Pfam PF03927 NapD protein 16 89 3.7E-26 T 11-10-2018 IPR005623 Chaperone NapD, nitrate reductase assembly AMK58_21810 2216ae88fe9c11470a7aeac5abde29c2 104 Gene3D G3DSA:3.30.70.920 16 84 2.1E-19 T 11-10-2018 AMK58_21810 2216ae88fe9c11470a7aeac5abde29c2 104 Hamap MF_02200 Chaperone NapD [napD]. 16 91 17.485 T 11-10-2018 IPR005623 Chaperone NapD, nitrate reductase assembly AMK58_05240 6fa6d40d8cc7bb2c2950999f23d5c4be 314 Gene3D G3DSA:3.40.50.2000 4 155 6.0E-14 T 11-10-2018 AMK58_05240 6fa6d40d8cc7bb2c2950999f23d5c4be 314 Gene3D G3DSA:3.40.50.2000 166 307 1.3E-27 T 11-10-2018 AMK58_05240 6fa6d40d8cc7bb2c2950999f23d5c4be 314 SUPERFAMILY SSF53756 10 309 7.53E-53 T 11-10-2018 AMK58_05240 6fa6d40d8cc7bb2c2950999f23d5c4be 314 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 168 276 1.4E-19 T 11-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 AMK58_01580 c7e3f55e5d19a483b638794f1f89b12d 165 SUPERFAMILY SSF52540 30 136 4.78E-15 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_01580 c7e3f55e5d19a483b638794f1f89b12d 165 Gene3D G3DSA:3.40.50.300 8 157 6.9E-37 T 11-10-2018 AMK58_01580 c7e3f55e5d19a483b638794f1f89b12d 165 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 14 146 1.3E-28 T 11-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 AMK58_01580 c7e3f55e5d19a483b638794f1f89b12d 165 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 15 134 2.5E-34 T 11-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 AMK58_03580 05a297bb15b4f3fa388316280e440dec 283 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 4 259 1.1E-51 T 11-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 AMK58_03580 05a297bb15b4f3fa388316280e440dec 283 PRINTS PR00987 Glutamyl-tRNA synthetase signature 192 202 7.1E-18 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMK58_03580 05a297bb15b4f3fa388316280e440dec 283 PRINTS PR00987 Glutamyl-tRNA synthetase signature 21 32 7.1E-18 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMK58_03580 05a297bb15b4f3fa388316280e440dec 283 PRINTS PR00987 Glutamyl-tRNA synthetase signature 208 216 7.1E-18 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMK58_03580 05a297bb15b4f3fa388316280e440dec 283 PRINTS PR00987 Glutamyl-tRNA synthetase signature 7 19 7.1E-18 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMK58_03580 05a297bb15b4f3fa388316280e440dec 283 PRINTS PR00987 Glutamyl-tRNA synthetase signature 36 49 7.1E-18 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMK58_03580 05a297bb15b4f3fa388316280e440dec 283 SUPERFAMILY SSF52374 4 274 1.47E-82 T 11-10-2018 AMK58_03580 05a297bb15b4f3fa388316280e440dec 283 Gene3D G3DSA:3.40.50.620 1 279 2.0E-89 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_03580 05a297bb15b4f3fa388316280e440dec 283 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 10 21 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMK58_15555 2d9c132ae7211df5f1d59b346f089cf6 302 Gene3D G3DSA:1.10.10.10 6 92 3.9E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_15555 2d9c132ae7211df5f1d59b346f089cf6 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 65 4.3E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_15555 2d9c132ae7211df5f1d59b346f089cf6 302 Gene3D G3DSA:3.40.190.10 165 266 3.9E-55 T 11-10-2018 AMK58_15555 2d9c132ae7211df5f1d59b346f089cf6 302 SUPERFAMILY SSF53850 92 297 4.03E-44 T 11-10-2018 AMK58_15555 2d9c132ae7211df5f1d59b346f089cf6 302 Pfam PF03466 LysR substrate binding domain 90 293 6.1E-45 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_15555 2d9c132ae7211df5f1d59b346f089cf6 302 Gene3D G3DSA:3.40.190.10 93 290 3.9E-55 T 11-10-2018 AMK58_15555 2d9c132ae7211df5f1d59b346f089cf6 302 SUPERFAMILY SSF46785 11 112 2.43E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_02075 f852ffcf9eb955c1a285531d806ad5c0 149 Gene3D G3DSA:2.40.50.90 28 131 2.8E-15 T 11-10-2018 IPR035437 SNase-like, OB-fold superfamily AMK58_02075 f852ffcf9eb955c1a285531d806ad5c0 149 SMART SM00318 27 144 0.0014 T 11-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 AMK58_02075 f852ffcf9eb955c1a285531d806ad5c0 149 Pfam PF00565 Staphylococcal nuclease homologue 58 135 8.9E-6 T 11-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 AMK58_02075 f852ffcf9eb955c1a285531d806ad5c0 149 SUPERFAMILY SSF50199 25 141 6.41E-20 T 11-10-2018 AMK58_23620 cb1b1d8c49e7fb33e78676cd18d6e309 286 Pfam PF03705 CheR methyltransferase, all-alpha domain 16 65 5.4E-14 T 11-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal AMK58_23620 cb1b1d8c49e7fb33e78676cd18d6e309 286 SUPERFAMILY SSF53335 83 275 2.22E-44 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_23620 cb1b1d8c49e7fb33e78676cd18d6e309 286 Gene3D G3DSA:3.40.50.150 82 283 9.4E-57 T 11-10-2018 AMK58_23620 cb1b1d8c49e7fb33e78676cd18d6e309 286 SMART SM00138 15 281 5.0E-89 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMK58_23620 cb1b1d8c49e7fb33e78676cd18d6e309 286 SUPERFAMILY SSF47757 12 82 5.89E-18 T 11-10-2018 AMK58_23620 cb1b1d8c49e7fb33e78676cd18d6e309 286 Pfam PF01739 CheR methyltransferase, SAM binding domain 83 270 7.7E-56 T 11-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal AMK58_23620 cb1b1d8c49e7fb33e78676cd18d6e309 286 PRINTS PR00996 Glutamate methyltransferase family signature 240 263 9.1E-39 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMK58_23620 cb1b1d8c49e7fb33e78676cd18d6e309 286 PRINTS PR00996 Glutamate methyltransferase family signature 151 167 9.1E-39 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMK58_23620 cb1b1d8c49e7fb33e78676cd18d6e309 286 PRINTS PR00996 Glutamate methyltransferase family signature 37 50 9.1E-39 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMK58_23620 cb1b1d8c49e7fb33e78676cd18d6e309 286 PRINTS PR00996 Glutamate methyltransferase family signature 221 235 9.1E-39 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMK58_23620 cb1b1d8c49e7fb33e78676cd18d6e309 286 PRINTS PR00996 Glutamate methyltransferase family signature 76 88 9.1E-39 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMK58_23620 cb1b1d8c49e7fb33e78676cd18d6e309 286 PRINTS PR00996 Glutamate methyltransferase family signature 116 136 9.1E-39 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMK58_23620 cb1b1d8c49e7fb33e78676cd18d6e309 286 Gene3D G3DSA:1.10.155.10 5 81 3.5E-14 T 11-10-2018 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily AMK58_22180 65cc0db55e54701f9547dc758e88a7f3 243 PIRSF PIRSF015736 1 243 1.6E-62 T 11-10-2018 IPR026286 Maleate isomerase/Arylmalonate decarboxylase AMK58_22180 65cc0db55e54701f9547dc758e88a7f3 243 Gene3D G3DSA:3.40.50.12500 2 240 2.8E-62 T 11-10-2018 AMK58_22180 65cc0db55e54701f9547dc758e88a7f3 243 Pfam PF01177 Asp/Glu/Hydantoin racemase 11 220 1.1E-8 T 11-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMK58_04050 079b0116d0ec24541f321b39e9b7b71d 338 Gene3D G3DSA:1.10.600.10 9 337 2.8E-110 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily AMK58_04050 079b0116d0ec24541f321b39e9b7b71d 338 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 95 109 - T 11-10-2018 IPR033749 Polyprenyl synthetase, conserved site AMK58_04050 079b0116d0ec24541f321b39e9b7b71d 338 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 217 229 - T 11-10-2018 IPR033749 Polyprenyl synthetase, conserved site AMK58_04050 079b0116d0ec24541f321b39e9b7b71d 338 SUPERFAMILY SSF48576 15 337 5.9E-98 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily AMK58_04050 079b0116d0ec24541f321b39e9b7b71d 338 Pfam PF00348 Polyprenyl synthetase 46 290 7.8E-73 T 11-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 AMK58_26075 4968c5e38d7af52891899c8ba41cc292 361 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 41 320 1.7E-58 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 AMK58_26075 4968c5e38d7af52891899c8ba41cc292 361 Gene3D G3DSA:3.40.190.170 32 336 2.5E-125 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily AMK58_26075 4968c5e38d7af52891899c8ba41cc292 361 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 1 24 4.3E-5 T 11-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal AMK58_26075 4968c5e38d7af52891899c8ba41cc292 361 SUPERFAMILY SSF53850 140 312 1.25E-5 T 11-10-2018 AMK58_26075 4968c5e38d7af52891899c8ba41cc292 361 Gene3D G3DSA:3.40.190.10 152 322 2.5E-125 T 11-10-2018 AMK58_26075 4968c5e38d7af52891899c8ba41cc292 361 PIRSF PIRSF039026 1 356 2.3E-123 T 11-10-2018 IPR026289 Solute binding protein, mannitol/chloroaromatic system-like AMK58_15895 72c92ac82044b1a144fd357d6280aa00 281 PRINTS PR00111 Alpha/beta hydrolase fold signature 225 239 1.0E-6 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_15895 72c92ac82044b1a144fd357d6280aa00 281 PRINTS PR00111 Alpha/beta hydrolase fold signature 54 69 1.0E-6 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_15895 72c92ac82044b1a144fd357d6280aa00 281 PRINTS PR00111 Alpha/beta hydrolase fold signature 100 113 1.0E-6 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_15895 72c92ac82044b1a144fd357d6280aa00 281 Gene3D G3DSA:3.40.50.1820 3 279 3.1E-81 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_15895 72c92ac82044b1a144fd357d6280aa00 281 SUPERFAMILY SSF53474 14 272 6.69E-48 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_15895 72c92ac82044b1a144fd357d6280aa00 281 Pfam PF12697 Alpha/beta hydrolase family 31 273 5.8E-20 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_27020 ec6ecff148df92d1e1f4dc20150a1fbe 160 Gene3D G3DSA:3.40.50.2300 2 143 2.0E-36 T 11-10-2018 AMK58_27020 ec6ecff148df92d1e1f4dc20150a1fbe 160 SMART SM00448 5 129 2.9E-30 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_27020 ec6ecff148df92d1e1f4dc20150a1fbe 160 SUPERFAMILY SSF52172 6 138 1.85E-32 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_27020 ec6ecff148df92d1e1f4dc20150a1fbe 160 Pfam PF00072 Response regulator receiver domain 7 129 1.9E-21 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_09090 1f82db971e9ca0001b27d3cad784162b 311 Gene3D G3DSA:3.30.70.1350 209 291 8.6E-29 T 11-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 AMK58_09090 1f82db971e9ca0001b27d3cad784162b 311 Pfam PF16916 Dimerisation domain of Zinc Transporter 212 289 2.5E-25 T 11-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain AMK58_09090 1f82db971e9ca0001b27d3cad784162b 311 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 13 289 3.1E-65 T 11-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AMK58_09090 1f82db971e9ca0001b27d3cad784162b 311 Gene3D G3DSA:1.20.1510.10 10 208 6.0E-51 T 11-10-2018 IPR027469 Cation efflux transmembrane domain superfamily AMK58_09090 1f82db971e9ca0001b27d3cad784162b 311 Pfam PF01545 Cation efflux family 15 208 5.3E-38 T 11-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AMK58_09090 1f82db971e9ca0001b27d3cad784162b 311 SUPERFAMILY SSF160240 212 290 4.45E-22 T 11-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 AMK58_09090 1f82db971e9ca0001b27d3cad784162b 311 SUPERFAMILY SSF161111 8 209 5.23E-48 T 11-10-2018 IPR027469 Cation efflux transmembrane domain superfamily AMK58_03970 2c38758a91a30879cbda7fe229413e65 165 Gene3D G3DSA:2.40.330.20 1 145 6.6E-27 T 11-10-2018 IPR038619 MraZ superfamily AMK58_03970 2c38758a91a30879cbda7fe229413e65 165 Pfam PF02381 MraZ protein, putative antitoxin-like 87 134 1.3E-6 T 11-10-2018 IPR020603 MraZ domain AMK58_03970 2c38758a91a30879cbda7fe229413e65 165 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 165 28.483 T 11-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 AMK58_03970 2c38758a91a30879cbda7fe229413e65 165 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 4 128 1.0E-8 T 11-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 AMK58_03970 2c38758a91a30879cbda7fe229413e65 165 SUPERFAMILY SSF89447 1 137 5.98E-31 T 11-10-2018 IPR037914 SpoVT-AbrB domain superfamily AMK58_11685 24333c72a681c9f441d7db8cb7fc9d62 283 Gene3D G3DSA:1.10.760.10 157 282 1.0E-5 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_11685 24333c72a681c9f441d7db8cb7fc9d62 283 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 29 132 6.4E-5 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_11685 24333c72a681c9f441d7db8cb7fc9d62 283 SUPERFAMILY SSF46626 174 281 3.42E-14 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_11685 24333c72a681c9f441d7db8cb7fc9d62 283 SUPERFAMILY SSF46626 28 142 1.41E-21 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_11685 24333c72a681c9f441d7db8cb7fc9d62 283 Gene3D G3DSA:1.10.760.10 9 143 4.2E-11 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_08400 1b705941130b437306374975920e8221 232 Gene3D G3DSA:1.20.1540.10 4 205 3.2E-29 T 11-10-2018 IPR035952 Rhomboid-like superfamily AMK58_08400 1b705941130b437306374975920e8221 232 SUPERFAMILY SSF144091 5 202 4.32E-32 T 11-10-2018 AMK58_08400 1b705941130b437306374975920e8221 232 Pfam PF01694 Rhomboid family 51 201 5.2E-34 T 11-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 AMK58_12105 4406dda34771fc2a8af79747623697a4 211 SUPERFAMILY SSF47616 80 204 1.95E-23 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMK58_12105 4406dda34771fc2a8af79747623697a4 211 Gene3D G3DSA:3.40.30.10 4 202 7.3E-69 T 11-10-2018 AMK58_12105 4406dda34771fc2a8af79747623697a4 211 SUPERFAMILY SSF52833 1 83 4.3E-26 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_12105 4406dda34771fc2a8af79747623697a4 211 Pfam PF02798 Glutathione S-transferase, N-terminal domain 2 73 1.2E-18 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMK58_12105 4406dda34771fc2a8af79747623697a4 211 Gene3D G3DSA:1.20.1050.10 82 194 7.3E-69 T 11-10-2018 AMK58_12105 4406dda34771fc2a8af79747623697a4 211 Pfam PF14497 Glutathione S-transferase, C-terminal domain 110 202 7.8E-6 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal AMK58_27720 6570c7464cf7cf9f362a01e7b57194ed 275 Gene3D G3DSA:1.10.3720.10 60 265 1.6E-16 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_27720 6570c7464cf7cf9f362a01e7b57194ed 275 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 268 1.2E-18 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_27720 6570c7464cf7cf9f362a01e7b57194ed 275 SUPERFAMILY SSF161098 64 251 9.81E-20 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_03635 416ddb71b7d60921d0d01d2464dc4ad6 588 SUPERFAMILY SSF161098 384 573 1.14E-18 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_03635 416ddb71b7d60921d0d01d2464dc4ad6 588 Gene3D G3DSA:1.10.3720.10 382 576 3.0E-18 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_03635 416ddb71b7d60921d0d01d2464dc4ad6 588 Gene3D G3DSA:1.10.3720.10 61 264 4.2E-25 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_03635 416ddb71b7d60921d0d01d2464dc4ad6 588 SUPERFAMILY SSF161098 63 258 1.31E-21 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_03635 416ddb71b7d60921d0d01d2464dc4ad6 588 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 402 570 3.2E-15 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_03635 416ddb71b7d60921d0d01d2464dc4ad6 588 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 255 2.1E-12 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_04515 8cee132cf338629ccd061047d617cfdc 729 Gene3D G3DSA:2.30.30.940 582 653 4.4E-153 T 11-10-2018 AMK58_04515 8cee132cf338629ccd061047d617cfdc 729 Gene3D G3DSA:3.40.50.300 491 716 4.4E-153 T 11-10-2018 AMK58_04515 8cee132cf338629ccd061047d617cfdc 729 SMART SM00382 346 526 9.4E-5 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_04515 8cee132cf338629ccd061047d617cfdc 729 Pfam PF13604 AAA domain 332 513 5.6E-47 T 11-10-2018 AMK58_04515 8cee132cf338629ccd061047d617cfdc 729 SUPERFAMILY SSF52540 192 491 6.98E-45 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_04515 8cee132cf338629ccd061047d617cfdc 729 Pfam PF14490 Helix-hairpin-helix containing domain 153 241 1.1E-29 T 11-10-2018 IPR029493 RecD helicase-like helix-hairpin-helix domain AMK58_04515 8cee132cf338629ccd061047d617cfdc 729 SUPERFAMILY SSF52540 443 716 1.33E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_04515 8cee132cf338629ccd061047d617cfdc 729 Pfam PF14520 Helix-hairpin-helix domain 102 151 2.1E-11 T 11-10-2018 AMK58_04515 8cee132cf338629ccd061047d617cfdc 729 TIGRFAM TIGR01448 recD_rel: helicase, RecD/TraA family 16 724 1.4E-212 T 11-10-2018 IPR006345 DNA helicase, RecD-like GO:0003677|GO:0032508|GO:0043141 AMK58_04515 8cee132cf338629ccd061047d617cfdc 729 Gene3D G3DSA:3.40.50.300 319 722 4.4E-153 T 11-10-2018 AMK58_04515 8cee132cf338629ccd061047d617cfdc 729 SUPERFAMILY SSF47781 100 169 6.67E-12 T 11-10-2018 IPR010994 RuvA domain 2-like AMK58_04515 8cee132cf338629ccd061047d617cfdc 729 Gene3D G3DSA:1.10.10.2220 194 290 1.3E-15 T 11-10-2018 AMK58_04515 8cee132cf338629ccd061047d617cfdc 729 Pfam PF13538 UvrD-like helicase C-terminal domain 653 699 2.8E-17 T 11-10-2018 IPR027785 UvrD-like helicase C-terminal domain AMK58_04515 8cee132cf338629ccd061047d617cfdc 729 Hamap MF_01488 ATP-dependent RecD-like DNA helicase [recD2]. 13 729 28.224 T 11-10-2018 IPR006345 DNA helicase, RecD-like GO:0003677|GO:0032508|GO:0043141 AMK58_04515 8cee132cf338629ccd061047d617cfdc 729 Gene3D G3DSA:1.10.150.20 86 154 3.5E-11 T 11-10-2018 AMK58_04515 8cee132cf338629ccd061047d617cfdc 729 SMART SM00278 130 149 0.079 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMK58_04515 8cee132cf338629ccd061047d617cfdc 729 SMART SM00278 194 213 71.0 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMK58_18910 ce669c90632eb74cc313fdfc2c80f628 557 Pfam PF02470 MlaD protein 289 388 5.7E-17 T 11-10-2018 IPR003399 Mce/MlaD AMK58_18910 ce669c90632eb74cc313fdfc2c80f628 557 Pfam PF02470 MlaD protein 156 216 6.2E-8 T 11-10-2018 IPR003399 Mce/MlaD AMK58_18910 ce669c90632eb74cc313fdfc2c80f628 557 Pfam PF02470 MlaD protein 40 131 1.8E-11 T 11-10-2018 IPR003399 Mce/MlaD AMK58_01350 8b530e567887ef7bcb84864e97c68719 191 SUPERFAMILY SSF88946 16 115 2.16E-23 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMK58_01350 8b530e567887ef7bcb84864e97c68719 191 SUPERFAMILY SSF88659 112 189 1.03E-13 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMK58_01350 8b530e567887ef7bcb84864e97c68719 191 Pfam PF04545 Sigma-70, region 4 136 185 2.5E-11 T 11-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 AMK58_01350 8b530e567887ef7bcb84864e97c68719 191 Gene3D G3DSA:1.10.10.10 95 188 1.6E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_01350 8b530e567887ef7bcb84864e97c68719 191 Gene3D G3DSA:1.10.1740.10 15 94 5.6E-27 T 11-10-2018 AMK58_01350 8b530e567887ef7bcb84864e97c68719 191 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 30 187 2.5E-26 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMK58_01350 8b530e567887ef7bcb84864e97c68719 191 Pfam PF04542 Sigma-70 region 2 34 102 8.9E-18 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMK58_12925 dda9c66e213d4bdfae2a48703e3ed44c 447 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 63 272 3.4E-54 T 11-10-2018 IPR017732 Type IV / VI secretion system, DotU AMK58_12925 dda9c66e213d4bdfae2a48703e3ed44c 447 SUPERFAMILY SSF103088 331 446 8.11E-20 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMK58_12925 dda9c66e213d4bdfae2a48703e3ed44c 447 Pfam PF00691 OmpA family 341 438 9.5E-9 T 11-10-2018 IPR006665 OmpA-like domain AMK58_12925 dda9c66e213d4bdfae2a48703e3ed44c 447 Gene3D G3DSA:3.30.1330.60 304 447 7.2E-30 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMK58_12925 dda9c66e213d4bdfae2a48703e3ed44c 447 Gene3D G3DSA:1.25.40.590 61 219 2.6E-40 T 11-10-2018 IPR038522 Type IV / VI secretion system, DotU superfamily AMK58_12925 dda9c66e213d4bdfae2a48703e3ed44c 447 Pfam PF09850 Type VI secretion system protein DotU 64 265 2.0E-55 T 11-10-2018 IPR017732 Type IV / VI secretion system, DotU AMK58_13220 4a381c77384f20afba3c36f899c6d89b 236 SUPERFAMILY SSF53271 15 219 8.75E-26 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like AMK58_13220 4a381c77384f20afba3c36f899c6d89b 236 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 236 18.143 T 11-10-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMK58_13220 4a381c77384f20afba3c36f899c6d89b 236 Pfam PF00156 Phosphoribosyl transferase domain 72 157 1.9E-6 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMK58_13220 4a381c77384f20afba3c36f899c6d89b 236 Gene3D G3DSA:3.40.50.2020 7 234 3.1E-42 T 11-10-2018 AMK58_03880 a41acf5c87ecd282460e98a88e918617 132 SUPERFAMILY SSF47188 1 128 5.23E-31 T 11-10-2018 IPR035938 Hemerythrin-like superfamily AMK58_03880 a41acf5c87ecd282460e98a88e918617 132 Pfam PF01814 Hemerythrin HHE cation binding domain 13 125 2.6E-12 T 11-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 AMK58_03880 a41acf5c87ecd282460e98a88e918617 132 Gene3D G3DSA:1.20.120.50 1 132 1.5E-36 T 11-10-2018 IPR035938 Hemerythrin-like superfamily AMK58_03880 a41acf5c87ecd282460e98a88e918617 132 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 5 128 2.9E-33 T 11-10-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 AMK58_03880 a41acf5c87ecd282460e98a88e918617 132 ProSitePatterns PS00550 Hemerythrin family signature. 57 80 - T 11-10-2018 IPR016131 Haemerythrin, iron-binding site GO:0046872 AMK58_04675 90b310956f33515f224acae5d2c165f9 297 Gene3D G3DSA:1.10.4080.10 1 297 1.8E-117 T 11-10-2018 IPR036705 ADP-ribosylation/Crystallin J1 superfamily AMK58_04675 90b310956f33515f224acae5d2c165f9 297 SUPERFAMILY SSF101478 5 289 8.89E-74 T 11-10-2018 IPR036705 ADP-ribosylation/Crystallin J1 superfamily AMK58_04675 90b310956f33515f224acae5d2c165f9 297 Pfam PF03747 ADP-ribosylglycohydrolase 12 267 8.2E-51 T 11-10-2018 IPR005502 ADP-ribosylation/Crystallin J1 AMK58_04675 90b310956f33515f224acae5d2c165f9 297 TIGRFAM TIGR02662 dinitro_DRAG: ADP-ribosyl-[dinitrogen reductase] hydrolase 6 291 5.1E-156 T 11-10-2018 IPR013479 ADP-ribosyl-dinitrogen reductase hydrolase AMK58_16480 671525f9434e84dc5f2e48e2500c7aae 934 Gene3D G3DSA:2.60.120.260 34 183 2.3E-7 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily AMK58_16480 671525f9434e84dc5f2e48e2500c7aae 934 SUPERFAMILY SSF55874 487 664 3.27E-41 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_16480 671525f9434e84dc5f2e48e2500c7aae 934 SUPERFAMILY SSF49785 35 182 2.06E-8 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily AMK58_16480 671525f9434e84dc5f2e48e2500c7aae 934 Pfam PF00072 Response regulator receiver domain 688 801 5.0E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_16480 671525f9434e84dc5f2e48e2500c7aae 934 SMART SM00448 686 801 2.2E-31 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_16480 671525f9434e84dc5f2e48e2500c7aae 934 Gene3D G3DSA:1.20.120.160 826 930 3.8E-8 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMK58_16480 671525f9434e84dc5f2e48e2500c7aae 934 SUPERFAMILY SSF52172 685 805 2.56E-35 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_16480 671525f9434e84dc5f2e48e2500c7aae 934 Pfam PF01627 Hpt domain 840 925 1.0E-7 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMK58_16480 671525f9434e84dc5f2e48e2500c7aae 934 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 545 662 2.3E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_16480 671525f9434e84dc5f2e48e2500c7aae 934 SMART SM00388 432 497 1.2E-16 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_16480 671525f9434e84dc5f2e48e2500c7aae 934 Gene3D G3DSA:3.40.50.2300 683 806 3.2E-35 T 11-10-2018 AMK58_16480 671525f9434e84dc5f2e48e2500c7aae 934 SUPERFAMILY SSF47384 418 498 5.3E-16 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_16480 671525f9434e84dc5f2e48e2500c7aae 934 SUPERFAMILY SSF47226 832 925 1.96E-10 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMK58_16480 671525f9434e84dc5f2e48e2500c7aae 934 Gene3D G3DSA:3.30.565.10 498 665 3.7E-40 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_16480 671525f9434e84dc5f2e48e2500c7aae 934 Gene3D G3DSA:1.10.287.130 419 497 1.8E-17 T 11-10-2018 AMK58_16480 671525f9434e84dc5f2e48e2500c7aae 934 SMART SM00387 544 666 7.0E-29 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_16480 671525f9434e84dc5f2e48e2500c7aae 934 Pfam PF07695 7TM diverse intracellular signalling 200 392 3.6E-8 T 11-10-2018 IPR011623 7TM-DISM receptor, extracellular domain, type 1 AMK58_16480 671525f9434e84dc5f2e48e2500c7aae 934 PRINTS PR00344 Bacterial sensor protein C-terminal signature 626 644 7.8E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_16480 671525f9434e84dc5f2e48e2500c7aae 934 PRINTS PR00344 Bacterial sensor protein C-terminal signature 650 663 7.8E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_16480 671525f9434e84dc5f2e48e2500c7aae 934 PRINTS PR00344 Bacterial sensor protein C-terminal signature 607 617 7.8E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_16480 671525f9434e84dc5f2e48e2500c7aae 934 PRINTS PR00344 Bacterial sensor protein C-terminal signature 589 603 7.8E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_16480 671525f9434e84dc5f2e48e2500c7aae 934 Pfam PF00512 His Kinase A (phospho-acceptor) domain 433 497 1.2E-15 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_25060 a88deb96557904f14e93f09cd02b0918 418 Pfam PF06537 Di-haem oxidoreductase, putative peroxidase 26 77 3.7E-7 T 11-10-2018 IPR010538 Di-haem oxidoreductase, putative peroxidase AMK58_25060 a88deb96557904f14e93f09cd02b0918 418 Pfam PF06537 Di-haem oxidoreductase, putative peroxidase 87 416 4.7E-83 T 11-10-2018 IPR010538 Di-haem oxidoreductase, putative peroxidase AMK58_25060 a88deb96557904f14e93f09cd02b0918 418 SUPERFAMILY SSF46626 273 418 1.25E-16 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_25060 a88deb96557904f14e93f09cd02b0918 418 PIRSF PIRSF028099 16 418 1.8E-127 T 11-10-2018 IPR010538 Di-haem oxidoreductase, putative peroxidase AMK58_25680 a67dd8e4ad5b4c252f56a4bab5dd3cfa 340 SUPERFAMILY SSF47413 2 55 2.82E-6 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMK58_25680 a67dd8e4ad5b4c252f56a4bab5dd3cfa 340 Gene3D G3DSA:1.10.260.40 1 67 1.2E-6 T 11-10-2018 AMK58_25680 a67dd8e4ad5b4c252f56a4bab5dd3cfa 340 Pfam PF13614 AAA domain 72 254 2.4E-53 T 11-10-2018 IPR025669 AAA domain AMK58_25680 a67dd8e4ad5b4c252f56a4bab5dd3cfa 340 Gene3D G3DSA:3.40.50.300 68 337 2.7E-65 T 11-10-2018 AMK58_25680 a67dd8e4ad5b4c252f56a4bab5dd3cfa 340 Pfam PF13560 Helix-turn-helix domain 3 56 2.1E-7 T 11-10-2018 AMK58_25680 a67dd8e4ad5b4c252f56a4bab5dd3cfa 340 SUPERFAMILY SSF52540 73 330 5.32E-53 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_04520 e159a7cbfa4aa0973ad1fadff219f329 202 Gene3D G3DSA:2.40.50.140 134 200 2.2E-23 T 11-10-2018 AMK58_04520 e159a7cbfa4aa0973ad1fadff219f329 202 Gene3D G3DSA:2.40.50.140 18 85 7.6E-20 T 11-10-2018 AMK58_04520 e159a7cbfa4aa0973ad1fadff219f329 202 SUPERFAMILY SSF50249 137 200 4.95E-21 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_04520 e159a7cbfa4aa0973ad1fadff219f329 202 Pfam PF00313 'Cold-shock' DNA-binding domain 21 83 9.7E-17 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_04520 e159a7cbfa4aa0973ad1fadff219f329 202 Pfam PF00313 'Cold-shock' DNA-binding domain 138 199 1.0E-23 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_04520 e159a7cbfa4aa0973ad1fadff219f329 202 PRINTS PR00050 Cold shock protein signature 139 154 3.7E-13 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_04520 e159a7cbfa4aa0973ad1fadff219f329 202 PRINTS PR00050 Cold shock protein signature 160 169 3.7E-13 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_04520 e159a7cbfa4aa0973ad1fadff219f329 202 PRINTS PR00050 Cold shock protein signature 175 193 3.7E-13 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_04520 e159a7cbfa4aa0973ad1fadff219f329 202 SMART SM00357 138 202 1.3E-19 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 AMK58_04520 e159a7cbfa4aa0973ad1fadff219f329 202 SMART SM00357 21 85 9.0E-16 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 AMK58_04520 e159a7cbfa4aa0973ad1fadff219f329 202 SUPERFAMILY SSF50249 20 84 1.56E-17 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_16530 40fa176dbc2c1c169dc978a62a0c0e46 438 Gene3D G3DSA:3.40.190.10 157 180 1.8E-6 T 11-10-2018 AMK58_16530 40fa176dbc2c1c169dc978a62a0c0e46 438 Gene3D G3DSA:3.40.190.10 74 156 1.8E-6 T 11-10-2018 AMK58_16530 40fa176dbc2c1c169dc978a62a0c0e46 438 Gene3D G3DSA:3.40.190.10 186 353 7.8E-27 T 11-10-2018 AMK58_16530 40fa176dbc2c1c169dc978a62a0c0e46 438 SUPERFAMILY SSF53850 54 436 2.45E-51 T 11-10-2018 AMK58_16530 40fa176dbc2c1c169dc978a62a0c0e46 438 Pfam PF13416 Bacterial extracellular solute-binding protein 69 375 1.2E-20 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMK58_25770 a75c0a47e8acf5919d9646429aa1798a 383 SUPERFAMILY SSF53686 52 364 1.7E-67 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMK58_25770 a75c0a47e8acf5919d9646429aa1798a 383 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 53 343 2.0E-43 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AMK58_25770 a75c0a47e8acf5919d9646429aa1798a 383 Gene3D G3DSA:3.40.50.1100 53 351 4.5E-65 T 11-10-2018 AMK58_25770 a75c0a47e8acf5919d9646429aa1798a 383 Gene3D G3DSA:3.40.50.1100 80 186 4.5E-65 T 11-10-2018 AMK58_15725 2b17b21db4a2d728205d5c8b28b593e4 133 Gene3D G3DSA:1.10.12.20 7 50 3.3E-6 T 11-10-2018 AMK58_15725 2b17b21db4a2d728205d5c8b28b593e4 133 Pfam PF01796 DUF35 OB-fold domain, acyl-CoA-associated 55 116 1.2E-20 T 11-10-2018 IPR002878 Domain of unknown function DUF35, OB-fold, C-terminal AMK58_15725 2b17b21db4a2d728205d5c8b28b593e4 133 SUPERFAMILY SSF50249 2 124 4.11E-37 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_15725 2b17b21db4a2d728205d5c8b28b593e4 133 Pfam PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) 15 47 1.3E-13 T 11-10-2018 IPR022002 Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal AMK58_05080 29b91f7380d9cc2646471913b20494c2 163 Gene3D G3DSA:3.40.630.30 1 163 4.6E-53 T 11-10-2018 AMK58_05080 29b91f7380d9cc2646471913b20494c2 163 Pfam PF00583 Acetyltransferase (GNAT) family 20 137 1.9E-18 T 11-10-2018 IPR000182 GNAT domain AMK58_05080 29b91f7380d9cc2646471913b20494c2 163 SUPERFAMILY SSF55729 4 150 2.06E-37 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_02750 08ec3eb260f483e2e7f202a30450c8ec 262 Pfam PF01223 DNA/RNA non-specific endonuclease 43 244 7.8E-46 T 11-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 AMK58_02750 08ec3eb260f483e2e7f202a30450c8ec 262 SUPERFAMILY SSF54060 30 253 1.88E-63 T 11-10-2018 AMK58_02750 08ec3eb260f483e2e7f202a30450c8ec 262 Gene3D G3DSA:3.40.570.10 38 253 8.6E-56 T 11-10-2018 AMK58_02750 08ec3eb260f483e2e7f202a30450c8ec 262 SMART SM00477 56 245 1.9E-37 T 11-10-2018 IPR020821 Extracellular Endonuclease, subunit A GO:0003676|GO:0016787|GO:0046872 AMK58_02750 08ec3eb260f483e2e7f202a30450c8ec 262 ProSitePatterns PS01070 DNA/RNA non-specific endonucleases active site. 117 125 - T 11-10-2018 IPR018524 DNA/RNA non-specific endonuclease, active site GO:0003676|GO:0016787|GO:0046872 AMK58_02750 08ec3eb260f483e2e7f202a30450c8ec 262 SMART SM00892 55 245 2.2E-43 T 11-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 AMK58_10025 200c28e6b3084245a03e5d217c836df1 167 SUPERFAMILY SSF53335 15 138 1.02E-6 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_10025 200c28e6b3084245a03e5d217c836df1 167 Pfam PF12692 S-adenosyl-L-methionine methyltransferase 6 144 2.0E-35 T 11-10-2018 IPR025690 Methyltransferase, putative AMK58_10025 200c28e6b3084245a03e5d217c836df1 167 Gene3D G3DSA:3.40.50.150 1 165 6.3E-54 T 11-10-2018 AMK58_14810 22ed1e888e06cc1ae4deaf93f0bb5feb 373 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 4 357 5.4E-72 T 11-10-2018 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 AMK58_14810 22ed1e888e06cc1ae4deaf93f0bb5feb 373 Pfam PF03739 Predicted permease YjgP/YjgQ family 6 358 1.6E-65 T 11-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 AMK58_09740 aeb61c9803ad3281b02fffd2a2f43022 190 SUPERFAMILY SSF48452 58 183 3.8E-24 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_09740 aeb61c9803ad3281b02fffd2a2f43022 190 SMART SM00028 138 171 0.042 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_09740 aeb61c9803ad3281b02fffd2a2f43022 190 SMART SM00028 70 103 120.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_09740 aeb61c9803ad3281b02fffd2a2f43022 190 SMART SM00028 104 137 9.8E-6 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_09740 aeb61c9803ad3281b02fffd2a2f43022 190 Pfam PF13432 Tetratricopeptide repeat 109 169 3.4E-7 T 11-10-2018 AMK58_09740 aeb61c9803ad3281b02fffd2a2f43022 190 Gene3D G3DSA:1.25.40.10 62 186 9.0E-23 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_25550 7afacead9be655cd99c1f09b99f17036 211 SUPERFAMILY SSF56214 96 197 2.27E-14 T 11-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 AMK58_25550 7afacead9be655cd99c1f09b99f17036 211 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 97 161 2.4E-8 T 11-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 AMK58_25550 7afacead9be655cd99c1f09b99f17036 211 Gene3D G3DSA:3.90.470.20 97 190 2.4E-18 T 11-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 AMK58_25550 7afacead9be655cd99c1f09b99f17036 211 Gene3D G3DSA:3.90.470.20 54 96 2.4E-18 T 11-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 AMK58_25550 7afacead9be655cd99c1f09b99f17036 211 SUPERFAMILY SSF56214 50 89 4.32E-6 T 11-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 AMK58_08325 92e8b8b1aabf3922f667fe51e4a8942a 143 PIRSF PIRSF005384 2 143 2.6E-58 T 11-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 AMK58_08325 92e8b8b1aabf3922f667fe51e4a8942a 143 SUPERFAMILY SSF89623 2 142 9.29E-57 T 11-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 AMK58_08325 92e8b8b1aabf3922f667fe51e4a8942a 143 TIGRFAM TIGR01120 rpiB: ribose 5-phosphate isomerase B 4 142 7.9E-49 T 11-10-2018 IPR004785 Ribose 5-phosphate isomerase B GO:0004751|GO:0006098 AMK58_08325 92e8b8b1aabf3922f667fe51e4a8942a 143 TIGRFAM TIGR00689 rpiB_lacA_lacB: sugar-phosphate isomerase, RpiB/LacA/LacB family 4 142 4.7E-54 T 11-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 AMK58_08325 92e8b8b1aabf3922f667fe51e4a8942a 143 Pfam PF02502 Ribose/Galactose Isomerase 4 142 6.4E-57 T 11-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 AMK58_08325 92e8b8b1aabf3922f667fe51e4a8942a 143 Gene3D G3DSA:3.40.1400.10 1 143 3.5E-59 T 11-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 AMK58_18470 1a34afdc21e53f2d5a0d12df79fc815d 301 SUPERFAMILY SSF46785 5 113 6.19E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_18470 1a34afdc21e53f2d5a0d12df79fc815d 301 Gene3D G3DSA:3.40.190.10 166 268 7.8E-51 T 11-10-2018 AMK58_18470 1a34afdc21e53f2d5a0d12df79fc815d 301 Pfam PF03466 LysR substrate binding domain 90 295 1.6E-33 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_18470 1a34afdc21e53f2d5a0d12df79fc815d 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 1.8E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_18470 1a34afdc21e53f2d5a0d12df79fc815d 301 SUPERFAMILY SSF53850 92 299 8.84E-37 T 11-10-2018 AMK58_18470 1a34afdc21e53f2d5a0d12df79fc815d 301 Gene3D G3DSA:3.40.190.10 94 293 7.8E-51 T 11-10-2018 AMK58_18470 1a34afdc21e53f2d5a0d12df79fc815d 301 Gene3D G3DSA:1.10.10.10 4 91 2.6E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_20090 d9d344987e72f3ee254c2bdafe2bf361 342 Pfam PF08544 GHMP kinases C terminal 239 290 2.4E-7 T 11-10-2018 IPR013750 GHMP kinase, C-terminal domain AMK58_20090 d9d344987e72f3ee254c2bdafe2bf361 342 Gene3D G3DSA:3.30.230.10 1 175 3.2E-47 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMK58_20090 d9d344987e72f3ee254c2bdafe2bf361 342 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 4 303 30.287 T 11-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 AMK58_20090 d9d344987e72f3ee254c2bdafe2bf361 342 SUPERFAMILY SSF55060 178 301 2.97E-23 T 11-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily AMK58_20090 d9d344987e72f3ee254c2bdafe2bf361 342 SUPERFAMILY SSF54211 6 172 6.75E-32 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMK58_20090 d9d344987e72f3ee254c2bdafe2bf361 342 Gene3D G3DSA:3.30.70.890 178 305 5.2E-26 T 11-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily AMK58_20090 d9d344987e72f3ee254c2bdafe2bf361 342 Pfam PF00288 GHMP kinases N terminal domain 104 160 2.9E-8 T 11-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 AMK58_20090 d9d344987e72f3ee254c2bdafe2bf361 342 PIRSF PIRSF010376 2 310 1.2E-73 T 11-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 AMK58_09425 0d8f54cbc0f0dcdd87bffd351bc226ab 325 Gene3D G3DSA:3.40.50.11270 17 101 2.9E-108 T 11-10-2018 AMK58_09425 0d8f54cbc0f0dcdd87bffd351bc226ab 325 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 7 287 1.7E-99 T 11-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 AMK58_09425 0d8f54cbc0f0dcdd87bffd351bc226ab 325 Gene3D G3DSA:3.40.1010.20 12 284 2.9E-108 T 11-10-2018 AMK58_09425 0d8f54cbc0f0dcdd87bffd351bc226ab 325 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 6 290 37.027 T 11-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 AMK58_09425 0d8f54cbc0f0dcdd87bffd351bc226ab 325 Gene3D G3DSA:3.40.1010.20 102 199 2.9E-108 T 11-10-2018 AMK58_09425 0d8f54cbc0f0dcdd87bffd351bc226ab 325 Pfam PF02401 LytB protein 8 285 7.0E-89 T 11-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 AMK58_21465 8b6195034e67093191a2e17e56862316 412 Gene3D G3DSA:2.40.10.10 11 126 1.1E-25 T 11-10-2018 AMK58_21465 8b6195034e67093191a2e17e56862316 412 Pfam PF13365 Trypsin-like peptidase domain 29 185 5.2E-14 T 11-10-2018 AMK58_21465 8b6195034e67093191a2e17e56862316 412 SUPERFAMILY SSF50494 9 218 1.13E-22 T 11-10-2018 IPR009003 Peptidase S1, PA clan AMK58_21465 8b6195034e67093191a2e17e56862316 412 PRINTS PR00839 V8 serine protease family signature 133 146 6.3E-10 T 11-10-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 AMK58_21465 8b6195034e67093191a2e17e56862316 412 PRINTS PR00839 V8 serine protease family signature 29 46 6.3E-10 T 11-10-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 AMK58_21465 8b6195034e67093191a2e17e56862316 412 PRINTS PR00839 V8 serine protease family signature 168 184 6.3E-10 T 11-10-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 AMK58_21465 8b6195034e67093191a2e17e56862316 412 Gene3D G3DSA:2.40.10.10 8 197 1.1E-25 T 11-10-2018 AMK58_21465 8b6195034e67093191a2e17e56862316 412 Gene3D G3DSA:2.150.10.10 211 393 7.3E-17 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_21465 8b6195034e67093191a2e17e56862316 412 SUPERFAMILY SSF51120 256 378 9.29E-12 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_17960 2930047f0fbfabd712be5b5e761f9b70 129 Gene3D G3DSA:1.20.120.160 19 127 3.5E-12 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMK58_17960 2930047f0fbfabd712be5b5e761f9b70 129 Pfam PF01627 Hpt domain 43 122 8.8E-9 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMK58_17960 2930047f0fbfabd712be5b5e761f9b70 129 SUPERFAMILY SSF47226 18 128 1.01E-14 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMK58_27460 f971fcdee714342cc81097ae44a791fc 498 Gene3D G3DSA:2.60.40.420 373 495 7.7E-38 T 11-10-2018 IPR008972 Cupredoxin AMK58_27460 f971fcdee714342cc81097ae44a791fc 498 Pfam PF07731 Multicopper oxidase 385 493 6.7E-29 T 11-10-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 AMK58_27460 f971fcdee714342cc81097ae44a791fc 498 SUPERFAMILY SSF49503 40 156 4.02E-14 T 11-10-2018 IPR008972 Cupredoxin AMK58_27460 f971fcdee714342cc81097ae44a791fc 498 ProSitePatterns PS00079 Multicopper oxidases signature 1. 472 492 - T 11-10-2018 IPR033138 Multicopper oxidases, conserved site AMK58_27460 f971fcdee714342cc81097ae44a791fc 498 SUPERFAMILY SSF49503 162 330 3.88E-23 T 11-10-2018 IPR008972 Cupredoxin AMK58_27460 f971fcdee714342cc81097ae44a791fc 498 Gene3D G3DSA:2.60.40.420 160 359 4.1E-25 T 11-10-2018 IPR008972 Cupredoxin AMK58_27460 f971fcdee714342cc81097ae44a791fc 498 SUPERFAMILY SSF49503 362 492 1.24E-36 T 11-10-2018 IPR008972 Cupredoxin AMK58_27460 f971fcdee714342cc81097ae44a791fc 498 ProSitePatterns PS00080 Multicopper oxidases signature 2. 477 488 - T 11-10-2018 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 AMK58_27460 f971fcdee714342cc81097ae44a791fc 498 Pfam PF07732 Multicopper oxidase 72 154 2.3E-12 T 11-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 AMK58_27460 f971fcdee714342cc81097ae44a791fc 498 Pfam PF00394 Multicopper oxidase 164 338 1.3E-14 T 11-10-2018 IPR001117 Multicopper oxidase, type 1 GO:0055114 AMK58_27460 f971fcdee714342cc81097ae44a791fc 498 Gene3D G3DSA:2.60.40.420 38 156 1.5E-14 T 11-10-2018 IPR008972 Cupredoxin AMK58_09580 1da6fb4462a56201893c969c68414631 354 SUPERFAMILY SSF53383 12 350 1.39E-96 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_09580 1da6fb4462a56201893c969c68414631 354 Gene3D G3DSA:3.90.1150.10 16 342 3.4E-129 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_09580 1da6fb4462a56201893c969c68414631 354 Gene3D G3DSA:3.40.640.10 23 263 3.4E-129 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_09580 1da6fb4462a56201893c969c68414631 354 Pfam PF01212 Beta-eliminating lyase 13 304 3.9E-63 T 11-10-2018 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 AMK58_09580 1da6fb4462a56201893c969c68414631 354 PIRSF PIRSF038940 11 354 5.9E-152 T 11-10-2018 IPR026273 Low specificity L-threonine aldolase GO:0004793|GO:0006567 KEGG: 00260+4.1.2.48 AMK58_03980 f4975d12b03a625313c4f7f687bc99ad 292 SUPERFAMILY SSF103481 183 280 3.66E-11 T 11-10-2018 AMK58_03980 f4975d12b03a625313c4f7f687bc99ad 292 Pfam PF00892 EamA-like transporter family 141 277 1.1E-13 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_03980 f4975d12b03a625313c4f7f687bc99ad 292 Pfam PF00892 EamA-like transporter family 7 129 2.6E-17 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_03980 f4975d12b03a625313c4f7f687bc99ad 292 SUPERFAMILY SSF103481 35 133 3.4E-13 T 11-10-2018 AMK58_20285 ccb80354eba23ecba626f279807c1d32 348 Gene3D G3DSA:3.40.190.10 130 332 5.2E-115 T 11-10-2018 AMK58_20285 ccb80354eba23ecba626f279807c1d32 348 Gene3D G3DSA:3.40.190.10 31 326 5.2E-115 T 11-10-2018 AMK58_20285 ccb80354eba23ecba626f279807c1d32 348 Pfam PF13416 Bacterial extracellular solute-binding protein 63 303 2.8E-42 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMK58_20285 ccb80354eba23ecba626f279807c1d32 348 SUPERFAMILY SSF53850 28 345 1.72E-65 T 11-10-2018 AMK58_09750 f2490440ba21c630c579b09531e26a9c 115 SUPERFAMILY SSF55298 2 114 1.49E-34 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMK58_09750 f2490440ba21c630c579b09531e26a9c 115 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 91 109 - T 11-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 AMK58_09750 f2490440ba21c630c579b09531e26a9c 115 Gene3D G3DSA:3.30.1330.40 1 115 7.5E-43 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMK58_09750 f2490440ba21c630c579b09531e26a9c 115 Pfam PF01042 Endoribonuclease L-PSP 11 114 6.0E-26 T 11-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 AMK58_26510 e831d34a69f325ea204f5c767754560d 405 Gene3D G3DSA:3.30.420.40 201 400 1.4E-72 T 11-10-2018 AMK58_26510 e831d34a69f325ea204f5c767754560d 405 Gene3D G3DSA:3.30.420.40 1 199 2.0E-57 T 11-10-2018 AMK58_26510 e831d34a69f325ea204f5c767754560d 405 Hamap MF_00020 Acetate kinase [ackA]. 1 397 158.651 T 11-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMK58_26510 e831d34a69f325ea204f5c767754560d 405 SUPERFAMILY SSF53067 6 200 2.07E-56 T 11-10-2018 AMK58_26510 e831d34a69f325ea204f5c767754560d 405 PIRSF PIRSF000722 3 398 1.0E-135 T 11-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMK58_26510 e831d34a69f325ea204f5c767754560d 405 Pfam PF00871 Acetokinase family 7 387 1.5E-105 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMK58_26510 e831d34a69f325ea204f5c767754560d 405 SUPERFAMILY SSF53067 164 394 2.59E-80 T 11-10-2018 AMK58_26510 e831d34a69f325ea204f5c767754560d 405 TIGRFAM TIGR00016 ackA: acetate kinase 6 391 3.3E-106 T 11-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMK58_26510 e831d34a69f325ea204f5c767754560d 405 PRINTS PR00471 Acetate kinase family signature 207 228 7.1E-39 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMK58_26510 e831d34a69f325ea204f5c767754560d 405 PRINTS PR00471 Acetate kinase family signature 323 339 7.1E-39 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMK58_26510 e831d34a69f325ea204f5c767754560d 405 PRINTS PR00471 Acetate kinase family signature 301 314 7.1E-39 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMK58_26510 e831d34a69f325ea204f5c767754560d 405 PRINTS PR00471 Acetate kinase family signature 7 18 7.1E-39 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMK58_26510 e831d34a69f325ea204f5c767754560d 405 PRINTS PR00471 Acetate kinase family signature 178 191 7.1E-39 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMK58_26510 e831d34a69f325ea204f5c767754560d 405 PRINTS PR00471 Acetate kinase family signature 375 387 7.1E-39 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMK58_09605 a98572fe517d3dcd3cd3be5ad4fc509c 675 Gene3D G3DSA:1.10.510.10 74 276 6.1E-15 T 11-10-2018 AMK58_09605 a98572fe517d3dcd3cd3be5ad4fc509c 675 SUPERFAMILY SSF56112 73 278 1.48E-17 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily AMK58_09605 a98572fe517d3dcd3cd3be5ad4fc509c 675 SMART SM00220 30 280 2.5E-4 T 11-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMK58_09605 a98572fe517d3dcd3cd3be5ad4fc509c 675 Gene3D G3DSA:3.30.200.20 82 105 6.1E-15 T 11-10-2018 AMK58_21320 fdaacbe1b412485a9832ba8bfd3cdfe3 295 SUPERFAMILY SSF46785 1 80 1.87E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_21320 fdaacbe1b412485a9832ba8bfd3cdfe3 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 1 57 2.2E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_21320 fdaacbe1b412485a9832ba8bfd3cdfe3 295 Gene3D G3DSA:3.40.190.10 86 285 1.7E-66 T 11-10-2018 AMK58_21320 fdaacbe1b412485a9832ba8bfd3cdfe3 295 SUPERFAMILY SSF53850 84 291 5.61E-46 T 11-10-2018 AMK58_21320 fdaacbe1b412485a9832ba8bfd3cdfe3 295 Gene3D G3DSA:1.10.10.10 1 80 1.6E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_21320 fdaacbe1b412485a9832ba8bfd3cdfe3 295 Pfam PF03466 LysR substrate binding domain 82 287 3.5E-46 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_21320 fdaacbe1b412485a9832ba8bfd3cdfe3 295 Gene3D G3DSA:3.40.190.10 157 258 1.7E-66 T 11-10-2018 AMK58_05535 a222f5323ab73081e9fafd8ce0cd0548 346 Gene3D G3DSA:3.30.420.40 155 320 9.1E-134 T 11-10-2018 AMK58_05535 a222f5323ab73081e9fafd8ce0cd0548 346 Gene3D G3DSA:3.90.640.10 187 262 9.1E-134 T 11-10-2018 AMK58_05535 a222f5323ab73081e9fafd8ce0cd0548 346 SUPERFAMILY SSF53067 10 149 3.53E-40 T 11-10-2018 AMK58_05535 a222f5323ab73081e9fafd8ce0cd0548 346 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 10 339 8.0E-159 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AMK58_05535 a222f5323ab73081e9fafd8ce0cd0548 346 SUPERFAMILY SSF53067 150 332 1.16E-47 T 11-10-2018 AMK58_05535 a222f5323ab73081e9fafd8ce0cd0548 346 Pfam PF06723 MreB/Mbl protein 11 339 2.0E-152 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AMK58_05535 a222f5323ab73081e9fafd8ce0cd0548 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 70 93 7.3E-63 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AMK58_05535 a222f5323ab73081e9fafd8ce0cd0548 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 133 152 7.3E-63 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AMK58_05535 a222f5323ab73081e9fafd8ce0cd0548 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 50 68 7.3E-63 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AMK58_05535 a222f5323ab73081e9fafd8ce0cd0548 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 188 208 7.3E-63 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AMK58_05535 a222f5323ab73081e9fafd8ce0cd0548 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 303 329 7.3E-63 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AMK58_05535 a222f5323ab73081e9fafd8ce0cd0548 346 Gene3D G3DSA:3.30.420.40 13 330 9.1E-134 T 11-10-2018 AMK58_12860 a7fcb3fca3cc6ee90e7f8d20d0ce2495 172 SUPERFAMILY SSF55729 7 165 3.78E-35 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_12860 a7fcb3fca3cc6ee90e7f8d20d0ce2495 172 Pfam PF13302 Acetyltransferase (GNAT) domain 14 148 8.9E-27 T 11-10-2018 IPR000182 GNAT domain AMK58_12860 a7fcb3fca3cc6ee90e7f8d20d0ce2495 172 Gene3D G3DSA:3.40.630.30 6 170 9.9E-36 T 11-10-2018 AMK58_00360 a2c5169f5176151ebddebdce827f113c 204 SUPERFAMILY SSF53335 7 181 5.18E-32 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_00360 a2c5169f5176151ebddebdce827f113c 204 Gene3D G3DSA:3.40.50.150 2 197 6.1E-53 T 11-10-2018 AMK58_00360 a2c5169f5176151ebddebdce827f113c 204 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 12 204 24.572 T 11-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 AMK58_00360 a2c5169f5176151ebddebdce827f113c 204 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 24 179 7.0E-37 T 11-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 AMK58_00360 a2c5169f5176151ebddebdce827f113c 204 Pfam PF02527 rRNA small subunit methyltransferase G 22 181 9.0E-39 T 11-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 AMK58_00360 a2c5169f5176151ebddebdce827f113c 204 PIRSF PIRSF003078 1 194 3.1E-43 T 11-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 AMK58_19085 9ca8f497f1b9b88874c1163e89f4461a 106 Gene3D G3DSA:3.40.50.2300 1 106 7.8E-18 T 11-10-2018 AMK58_19085 9ca8f497f1b9b88874c1163e89f4461a 106 Pfam PF00072 Response regulator receiver domain 1 69 5.1E-11 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_19085 9ca8f497f1b9b88874c1163e89f4461a 106 SUPERFAMILY SSF52172 1 103 1.37E-17 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_21175 c74424614e1d662cfd28176e69b112f7 142 Pfam PF09626 Dihaem cytochrome c 36 140 4.3E-30 T 11-10-2018 IPR018588 Dihaem cytochrome c AMK58_16995 bfb5a30c75d94390f5ddb64f2468172d 274 Pfam PF12277 Protein of unknown function (DUF3618) 37 70 2.3E-5 T 11-10-2018 IPR022062 Protein of unknown function DUF3618 AMK58_16995 bfb5a30c75d94390f5ddb64f2468172d 274 Gene3D G3DSA:1.20.1260.10 130 274 2.7E-10 T 11-10-2018 IPR012347 Ferritin-like AMK58_06950 c7683f3ed8d2893a388599953dc7308d 420 Pfam PF13660 Domain of unknown function (DUF4147) 10 228 3.5E-87 T 11-10-2018 IPR025286 MOFRL-associated domain Reactome: R-HSA-70350 AMK58_06950 c7683f3ed8d2893a388599953dc7308d 420 Gene3D G3DSA:3.40.50.10180 36 252 1.9E-149 T 11-10-2018 IPR038614 Glycerate kinase, N-terminal domain superfamily Reactome: R-HSA-70350 AMK58_06950 c7683f3ed8d2893a388599953dc7308d 420 Gene3D G3DSA:3.40.1480.10 253 414 1.9E-149 T 11-10-2018 IPR037035 Glycerate kinase-like, C-terminal domain superfamily AMK58_06950 c7683f3ed8d2893a388599953dc7308d 420 Pfam PF05161 MOFRL family 308 413 5.5E-37 T 11-10-2018 IPR007835 MOFRL domain Reactome: R-HSA-70350 AMK58_06950 c7683f3ed8d2893a388599953dc7308d 420 SUPERFAMILY SSF82544 4 419 6.02E-157 T 11-10-2018 AMK58_00655 2fe6b352adf679c7403fd8226afba92a 184 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 119 183 4.0E-27 T 11-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 AMK58_00655 2fe6b352adf679c7403fd8226afba92a 184 SUPERFAMILY SSF117916 103 183 3.6E-29 T 11-10-2018 IPR034904 Fe-S cluster assembly domain superfamily AMK58_00655 2fe6b352adf679c7403fd8226afba92a 184 SMART SM00932 3 89 5.2E-49 T 11-10-2018 IPR014824 Scaffold protein Nfu/NifU, N-terminal AMK58_00655 2fe6b352adf679c7403fd8226afba92a 184 Pfam PF01106 NifU-like domain 115 180 1.3E-30 T 11-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 AMK58_00655 2fe6b352adf679c7403fd8226afba92a 184 Pfam PF08712 Scaffold protein Nfu/NifU N terminal 3 88 1.1E-31 T 11-10-2018 IPR014824 Scaffold protein Nfu/NifU, N-terminal AMK58_00655 2fe6b352adf679c7403fd8226afba92a 184 SUPERFAMILY SSF110836 1 90 5.36E-31 T 11-10-2018 IPR036498 Scaffold protein Nfu/NifU, N-terminal domain superfamily AMK58_00655 2fe6b352adf679c7403fd8226afba92a 184 Gene3D G3DSA:3.30.1370.70 1 96 3.9E-35 T 11-10-2018 IPR036498 Scaffold protein Nfu/NifU, N-terminal domain superfamily AMK58_00655 2fe6b352adf679c7403fd8226afba92a 184 PIRSF PIRSF036773 1 184 9.3E-79 T 11-10-2018 IPR035433 NFU1-like AMK58_00655 2fe6b352adf679c7403fd8226afba92a 184 Gene3D G3DSA:3.30.300.130 109 183 3.2E-33 T 11-10-2018 IPR034904 Fe-S cluster assembly domain superfamily AMK58_00370 451e788e7940ab414961ce299261badd 443 Gene3D G3DSA:3.30.1360.120 1 121 5.1E-41 T 11-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 AMK58_00370 451e788e7940ab414961ce299261badd 443 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 9 443 1.1E-86 T 11-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 AMK58_00370 451e788e7940ab414961ce299261badd 443 SUPERFAMILY SSF116878 121 443 2.88E-46 T 11-10-2018 AMK58_00370 451e788e7940ab414961ce299261badd 443 Pfam PF12631 MnmE helical domain 123 440 5.2E-54 T 11-10-2018 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 AMK58_00370 451e788e7940ab414961ce299261badd 443 Gene3D G3DSA:1.20.120.430 122 443 1.0E-104 T 11-10-2018 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 AMK58_00370 451e788e7940ab414961ce299261badd 443 SUPERFAMILY SSF52540 72 363 1.83E-40 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_00370 451e788e7940ab414961ce299261badd 443 Pfam PF01926 50S ribosome-binding GTPase 218 330 1.1E-22 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMK58_00370 451e788e7940ab414961ce299261badd 443 Gene3D G3DSA:3.40.50.300 217 375 1.0E-104 T 11-10-2018 AMK58_00370 451e788e7940ab414961ce299261badd 443 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 218 340 1.3E-17 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMK58_00370 451e788e7940ab414961ce299261badd 443 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 3 443 31.93 T 11-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 AMK58_00370 451e788e7940ab414961ce299261badd 443 Pfam PF10396 GTP-binding protein TrmE N-terminus 4 120 1.3E-37 T 11-10-2018 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 AMK58_00370 451e788e7940ab414961ce299261badd 443 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 268 283 2.1E-6 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMK58_00370 451e788e7940ab414961ce299261badd 443 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 219 239 2.1E-6 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMK58_13210 dbf483835e2c5194475ce5d8e1565dba 778 SUPERFAMILY SSF82689 658 761 1.22E-13 T 11-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 AMK58_13210 dbf483835e2c5194475ce5d8e1565dba 778 Gene3D G3DSA:3.30.70.100 660 750 1.2E-23 T 11-10-2018 AMK58_13210 dbf483835e2c5194475ce5d8e1565dba 778 SUPERFAMILY SSF82861 512 591 7.45E-13 T 11-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 AMK58_13210 dbf483835e2c5194475ce5d8e1565dba 778 Gene3D G3DSA:2.30.30.60 609 658 9.9E-13 T 11-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily AMK58_13210 dbf483835e2c5194475ce5d8e1565dba 778 SUPERFAMILY SSF50182 593 656 1.41E-10 T 11-10-2018 IPR010920 LSM domain superfamily AMK58_13210 dbf483835e2c5194475ce5d8e1565dba 778 Pfam PF00924 Mechanosensitive ion channel 550 751 7.1E-40 T 11-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 AMK58_28230 cbb608390836a9ae19601862d393964d 309 Gene3D G3DSA:3.40.1190.20 1 307 6.4E-86 T 11-10-2018 IPR029056 Ribokinase-like AMK58_28230 cbb608390836a9ae19601862d393964d 309 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 4 306 2.4E-83 T 11-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 AMK58_28230 cbb608390836a9ae19601862d393964d 309 Pfam PF00294 pfkB family carbohydrate kinase 17 293 3.3E-37 T 11-10-2018 IPR011611 Carbohydrate kinase PfkB AMK58_28230 cbb608390836a9ae19601862d393964d 309 PIRSF PIRSF000535 1 308 7.0E-80 T 11-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 AMK58_28230 cbb608390836a9ae19601862d393964d 309 SUPERFAMILY SSF53613 4 298 3.42E-56 T 11-10-2018 IPR029056 Ribokinase-like AMK58_07900 6cd272a8f859c6ddd9de7e3c7ae93c2a 296 PRINTS PR00046 Major sigma-70 factor signature 74 87 2.7E-21 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_07900 6cd272a8f859c6ddd9de7e3c7ae93c2a 296 PRINTS PR00046 Major sigma-70 factor signature 231 243 2.7E-21 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_07900 6cd272a8f859c6ddd9de7e3c7ae93c2a 296 PRINTS PR00046 Major sigma-70 factor signature 98 106 2.7E-21 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_07900 6cd272a8f859c6ddd9de7e3c7ae93c2a 296 PRINTS PR00046 Major sigma-70 factor signature 250 265 2.7E-21 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_07900 6cd272a8f859c6ddd9de7e3c7ae93c2a 296 PRINTS PR00046 Major sigma-70 factor signature 265 276 2.7E-21 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_07900 6cd272a8f859c6ddd9de7e3c7ae93c2a 296 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 45 279 9.4E-29 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMK58_07900 6cd272a8f859c6ddd9de7e3c7ae93c2a 296 SUPERFAMILY SSF88659 188 280 7.85E-17 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMK58_07900 6cd272a8f859c6ddd9de7e3c7ae93c2a 296 Gene3D G3DSA:1.20.120.1810 2 117 7.0E-32 T 11-10-2018 AMK58_07900 6cd272a8f859c6ddd9de7e3c7ae93c2a 296 Pfam PF04542 Sigma-70 region 2 50 115 1.6E-17 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMK58_07900 6cd272a8f859c6ddd9de7e3c7ae93c2a 296 Pfam PF04545 Sigma-70, region 4 227 278 8.6E-13 T 11-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 AMK58_07900 6cd272a8f859c6ddd9de7e3c7ae93c2a 296 Gene3D G3DSA:1.10.10.10 210 284 4.5E-13 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_07900 6cd272a8f859c6ddd9de7e3c7ae93c2a 296 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 12 281 4.4E-100 T 11-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMK58_07900 6cd272a8f859c6ddd9de7e3c7ae93c2a 296 Gene3D G3DSA:1.10.10.10 132 204 9.3E-6 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_07900 6cd272a8f859c6ddd9de7e3c7ae93c2a 296 SUPERFAMILY SSF88946 10 118 1.01E-35 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMK58_13870 b329cbcb49de0788fe2ce021db2432e2 174 Gene3D G3DSA:2.30.30.40 11 112 5.7E-14 T 11-10-2018 AMK58_13870 b329cbcb49de0788fe2ce021db2432e2 174 Gene3D G3DSA:2.40.50.180 28 94 5.7E-14 T 11-10-2018 AMK58_13870 b329cbcb49de0788fe2ce021db2432e2 174 SMART SM00260 5 140 9.4E-8 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMK58_13870 b329cbcb49de0788fe2ce021db2432e2 174 SUPERFAMILY SSF50341 4 144 9.02E-23 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 AMK58_13870 b329cbcb49de0788fe2ce021db2432e2 174 Pfam PF01584 CheW-like domain 10 143 1.4E-17 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMK58_21595 b329cbcb49de0788fe2ce021db2432e2 174 Gene3D G3DSA:2.30.30.40 11 112 5.7E-14 T 11-10-2018 AMK58_21595 b329cbcb49de0788fe2ce021db2432e2 174 Gene3D G3DSA:2.40.50.180 28 94 5.7E-14 T 11-10-2018 AMK58_21595 b329cbcb49de0788fe2ce021db2432e2 174 SMART SM00260 5 140 9.4E-8 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMK58_21595 b329cbcb49de0788fe2ce021db2432e2 174 SUPERFAMILY SSF50341 4 144 9.02E-23 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 AMK58_21595 b329cbcb49de0788fe2ce021db2432e2 174 Pfam PF01584 CheW-like domain 10 143 1.4E-17 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMK58_02005 8f54f6cb7b36e106746c3e35b1811c13 424 SUPERFAMILY SSF141571 144 226 8.11E-20 T 11-10-2018 AMK58_02005 8f54f6cb7b36e106746c3e35b1811c13 424 SUPERFAMILY SSF141571 281 421 3.63E-27 T 11-10-2018 AMK58_02005 8f54f6cb7b36e106746c3e35b1811c13 424 Pfam PF00805 Pentapeptide repeats (8 copies) 149 188 8.9E-8 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_02005 8f54f6cb7b36e106746c3e35b1811c13 424 Pfam PF00805 Pentapeptide repeats (8 copies) 284 320 5.8E-5 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_02005 8f54f6cb7b36e106746c3e35b1811c13 424 Pfam PF00805 Pentapeptide repeats (8 copies) 78 114 1.1E-10 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_02005 8f54f6cb7b36e106746c3e35b1811c13 424 Pfam PF00805 Pentapeptide repeats (8 copies) 323 360 1.1E-10 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_02005 8f54f6cb7b36e106746c3e35b1811c13 424 Pfam PF00805 Pentapeptide repeats (8 copies) 189 221 9.3E-10 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_02005 8f54f6cb7b36e106746c3e35b1811c13 424 Pfam PF00805 Pentapeptide repeats (8 copies) 379 418 6.9E-9 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_02005 8f54f6cb7b36e106746c3e35b1811c13 424 SUPERFAMILY SSF141571 34 122 1.31E-22 T 11-10-2018 AMK58_02005 8f54f6cb7b36e106746c3e35b1811c13 424 Gene3D G3DSA:2.160.20.80 8 135 2.8E-25 T 11-10-2018 AMK58_02005 8f54f6cb7b36e106746c3e35b1811c13 424 Gene3D G3DSA:2.160.20.80 365 424 7.0E-10 T 11-10-2018 AMK58_02005 8f54f6cb7b36e106746c3e35b1811c13 424 Gene3D G3DSA:2.160.20.80 136 224 3.2E-21 T 11-10-2018 AMK58_02005 8f54f6cb7b36e106746c3e35b1811c13 424 Gene3D G3DSA:2.160.20.80 267 363 3.3E-19 T 11-10-2018 AMK58_07790 005e0989db1e736472f247780b0fd8e5 265 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 2 254 3.5E-86 T 11-10-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 AMK58_07790 005e0989db1e736472f247780b0fd8e5 265 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 125 135 - T 11-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 AMK58_07790 005e0989db1e736472f247780b0fd8e5 265 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 2 10 - T 11-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 AMK58_07790 005e0989db1e736472f247780b0fd8e5 265 PIRSF PIRSF005902 1 258 2.2E-78 T 11-10-2018 IPR001130 TatD family GO:0016788 AMK58_07790 005e0989db1e736472f247780b0fd8e5 265 SUPERFAMILY SSF51556 1 256 2.53E-91 T 11-10-2018 IPR032466 Metal-dependent hydrolase AMK58_07790 005e0989db1e736472f247780b0fd8e5 265 Pfam PF01026 TatD related DNase 3 254 6.5E-79 T 11-10-2018 IPR001130 TatD family GO:0016788 AMK58_07790 005e0989db1e736472f247780b0fd8e5 265 Gene3D G3DSA:3.20.20.140 1 257 2.6E-93 T 11-10-2018 AMK58_06425 b522d2eb734905f5f0665210243c6031 628 Pfam PF13624 SurA N-terminal domain 1 161 5.2E-44 T 11-10-2018 AMK58_06425 b522d2eb734905f5f0665210243c6031 628 Pfam PF13145 PPIC-type PPIASE domain 248 363 3.3E-23 T 11-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 AMK58_06425 b522d2eb734905f5f0665210243c6031 628 Pfam PF13145 PPIC-type PPIASE domain 387 478 2.5E-7 T 11-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 AMK58_06425 b522d2eb734905f5f0665210243c6031 628 SUPERFAMILY SSF54534 224 348 2.55E-9 T 11-10-2018 AMK58_06425 b522d2eb734905f5f0665210243c6031 628 Gene3D G3DSA:1.10.4030.30 35 196 2.2E-8 T 11-10-2018 AMK58_06425 b522d2eb734905f5f0665210243c6031 628 Gene3D G3DSA:3.10.50.40 264 374 1.3E-7 T 11-10-2018 AMK58_06425 b522d2eb734905f5f0665210243c6031 628 SUPERFAMILY SSF109998 40 293 1.44E-24 T 11-10-2018 IPR027304 Trigger factor/SurA domain superfamily AMK58_25080 5a85f857338fecab4795750656dacc71 190 Gene3D G3DSA:1.20.120.1220 10 123 2.5E-6 T 11-10-2018 AMK58_25080 5a85f857338fecab4795750656dacc71 190 Pfam PF01478 Type IV leader peptidase family 20 116 1.1E-10 T 11-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 AMK58_25790 1ecf9f07b405245748478400b5f81ae9 355 Pfam PF02653 Branched-chain amino acid transport system / permease component 54 316 7.1E-46 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_15665 60446b1767e7cb79a748672fd45bf544 377 Pfam PF00364 Biotin-requiring enzyme 10 81 3.3E-13 T 11-10-2018 IPR000089 Biotin/lipoyl attachment AMK58_15665 60446b1767e7cb79a748672fd45bf544 377 SUPERFAMILY SSF51230 8 97 5.63E-21 T 11-10-2018 IPR011053 Single hybrid motif AMK58_15665 60446b1767e7cb79a748672fd45bf544 377 Gene3D G3DSA:2.40.50.100 3 103 1.3E-21 T 11-10-2018 AMK58_15665 60446b1767e7cb79a748672fd45bf544 377 PRINTS PR00111 Alpha/beta hydrolase fold signature 322 336 8.0E-17 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_15665 60446b1767e7cb79a748672fd45bf544 377 PRINTS PR00111 Alpha/beta hydrolase fold signature 206 219 8.0E-17 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_15665 60446b1767e7cb79a748672fd45bf544 377 PRINTS PR00111 Alpha/beta hydrolase fold signature 220 233 8.0E-17 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_15665 60446b1767e7cb79a748672fd45bf544 377 PRINTS PR00111 Alpha/beta hydrolase fold signature 162 177 8.0E-17 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_15665 60446b1767e7cb79a748672fd45bf544 377 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 33 62 - T 11-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 AMK58_15665 60446b1767e7cb79a748672fd45bf544 377 SUPERFAMILY SSF53474 114 373 3.38E-58 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_15665 60446b1767e7cb79a748672fd45bf544 377 Gene3D G3DSA:3.40.50.1820 109 377 3.2E-64 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_15665 60446b1767e7cb79a748672fd45bf544 377 Pfam PF12697 Alpha/beta hydrolase family 139 367 2.2E-27 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_29220 5e47297d7cef983bc7f6efada4920078 577 Gene3D G3DSA:3.80.30.20 210 420 1.6E-16 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe AMK58_29220 5e47297d7cef983bc7f6efada4920078 577 SUPERFAMILY SSF102114 190 418 2.62E-37 T 11-10-2018 AMK58_29220 5e47297d7cef983bc7f6efada4920078 577 Pfam PF04055 Radical SAM superfamily 218 385 3.3E-11 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMK58_29220 5e47297d7cef983bc7f6efada4920078 577 SMART SM00729 211 430 1.4E-21 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMK58_10625 6acd1776201015b2ee5c1c518b3d3a77 332 SUPERFAMILY SSF53850 23 249 1.58E-36 T 11-10-2018 AMK58_10625 6acd1776201015b2ee5c1c518b3d3a77 332 Gene3D G3DSA:3.40.190.10 29 323 7.3E-70 T 11-10-2018 AMK58_10625 6acd1776201015b2ee5c1c518b3d3a77 332 Pfam PF09084 NMT1/THI5 like 36 248 1.5E-46 T 11-10-2018 IPR015168 SsuA/THI5-like AMK58_10625 6acd1776201015b2ee5c1c518b3d3a77 332 Gene3D G3DSA:3.40.190.10 106 208 7.3E-70 T 11-10-2018 AMK58_05045 737a4d93e4a1691587f1babe68827465 885 Pfam PF10101 Predicted membrane protein (DUF2339) 97 398 1.3E-57 T 11-10-2018 IPR019286 Protein of unknown function DUF2339, transmembrane AMK58_05045 737a4d93e4a1691587f1babe68827465 885 Pfam PF10101 Predicted membrane protein (DUF2339) 400 873 1.5E-81 T 11-10-2018 IPR019286 Protein of unknown function DUF2339, transmembrane AMK58_05045 737a4d93e4a1691587f1babe68827465 885 PIRSF PIRSF035905 19 881 4.4E-121 T 11-10-2018 IPR014600 Uncharacterised conserved protein UCP035905, membrane protein AMK58_26115 2961127dcc8077e957d3a2ad76389469 389 TIGRFAM TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2 5 386 1.4E-170 T 11-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 AMK58_26115 2961127dcc8077e957d3a2ad76389469 389 SUPERFAMILY SSF56059 104 306 1.38E-58 T 11-10-2018 AMK58_26115 2961127dcc8077e957d3a2ad76389469 389 Gene3D G3DSA:3.30.470.20 188 386 2.3E-63 T 11-10-2018 AMK58_26115 2961127dcc8077e957d3a2ad76389469 389 Gene3D G3DSA:3.40.50.20 2 114 1.5E-46 T 11-10-2018 AMK58_26115 2961127dcc8077e957d3a2ad76389469 389 SUPERFAMILY SSF52440 5 103 5.61E-30 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMK58_26115 2961127dcc8077e957d3a2ad76389469 389 Gene3D G3DSA:3.30.1490.20 115 187 1.2E-28 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMK58_26115 2961127dcc8077e957d3a2ad76389469 389 Hamap MF_01643 Formate-dependent phosphoribosylglycinamide formyltransferase [purT]. 1 387 50.179 T 11-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 AMK58_26115 2961127dcc8077e957d3a2ad76389469 389 Pfam PF02222 ATP-grasp domain 115 285 4.6E-56 T 11-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type AMK58_26115 2961127dcc8077e957d3a2ad76389469 389 SUPERFAMILY SSF51246 310 386 1.48E-17 T 11-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AMK58_06880 552a3f8c4bea426dba70db7c28e5e420 396 SUPERFAMILY SSF52283 1 176 2.64E-51 T 11-10-2018 AMK58_06880 552a3f8c4bea426dba70db7c28e5e420 396 SUPERFAMILY SSF51735 145 327 9.67E-38 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_06880 552a3f8c4bea426dba70db7c28e5e420 396 Gene3D G3DSA:3.40.50.720 145 328 1.8E-137 T 11-10-2018 AMK58_06880 552a3f8c4bea426dba70db7c28e5e420 396 SMART SM01002 154 321 9.8E-87 T 11-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain AMK58_06880 552a3f8c4bea426dba70db7c28e5e420 396 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 149 383 1.9E-71 T 11-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain AMK58_06880 552a3f8c4bea426dba70db7c28e5e420 396 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 178 203 - T 11-10-2018 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|Reactome: R-HSA-71403 AMK58_06880 552a3f8c4bea426dba70db7c28e5e420 396 Gene3D G3DSA:3.40.50.720 3 380 1.8E-137 T 11-10-2018 AMK58_06880 552a3f8c4bea426dba70db7c28e5e420 396 SMART SM01003 4 145 4.2E-66 T 11-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal AMK58_06880 552a3f8c4bea426dba70db7c28e5e420 396 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 5 145 2.1E-42 T 11-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal AMK58_01815 754a4b8e78838af27cbf293e874c1758 486 SUPERFAMILY SSF56112 6 293 8.77E-53 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily AMK58_01815 754a4b8e78838af27cbf293e874c1758 486 Gene3D G3DSA:3.30.200.20 3 98 2.1E-9 T 11-10-2018 AMK58_01815 754a4b8e78838af27cbf293e874c1758 486 Pfam PF00069 Protein kinase domain 18 270 1.8E-34 T 11-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMK58_01815 754a4b8e78838af27cbf293e874c1758 486 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 139 151 - T 11-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 AMK58_01815 754a4b8e78838af27cbf293e874c1758 486 Gene3D G3DSA:1.25.40.10 288 480 6.7E-10 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_01815 754a4b8e78838af27cbf293e874c1758 486 SMART SM00220 18 276 1.2E-28 T 11-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMK58_01815 754a4b8e78838af27cbf293e874c1758 486 Gene3D G3DSA:1.10.510.10 101 287 3.4E-36 T 11-10-2018 AMK58_01815 754a4b8e78838af27cbf293e874c1758 486 SUPERFAMILY SSF48452 299 473 1.57E-7 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_16370 2a60ea4948bbf0a81649b56cc1e7cca2 196 SUPERFAMILY SSF52833 38 189 1.06E-44 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_16370 2a60ea4948bbf0a81649b56cc1e7cca2 196 PRINTS PR01011 Glutathione peroxidase family signature 88 104 4.2E-15 T 11-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AMK58_16370 2a60ea4948bbf0a81649b56cc1e7cca2 196 PRINTS PR01011 Glutathione peroxidase family signature 151 160 4.2E-15 T 11-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AMK58_16370 2a60ea4948bbf0a81649b56cc1e7cca2 196 PRINTS PR01011 Glutathione peroxidase family signature 53 70 4.2E-15 T 11-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AMK58_16370 2a60ea4948bbf0a81649b56cc1e7cca2 196 Gene3D G3DSA:3.40.30.10 28 194 4.2E-45 T 11-10-2018 AMK58_16370 2a60ea4948bbf0a81649b56cc1e7cca2 196 ProSitePatterns PS00460 Glutathione peroxidases active site. 55 70 - T 11-10-2018 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 AMK58_16370 2a60ea4948bbf0a81649b56cc1e7cca2 196 Pfam PF00255 Glutathione peroxidase 43 140 9.7E-29 T 11-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AMK58_16370 2a60ea4948bbf0a81649b56cc1e7cca2 196 PIRSF PIRSF000303 8 193 4.2E-49 T 11-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AMK58_07645 63ad3d44e7ae840252660a987d16ed2a 340 SMART SM00062 35 265 2.2E-48 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMK58_07645 63ad3d44e7ae840252660a987d16ed2a 340 SUPERFAMILY SSF53850 26 256 2.43E-46 T 11-10-2018 AMK58_07645 63ad3d44e7ae840252660a987d16ed2a 340 Gene3D G3DSA:3.40.190.10 30 244 1.5E-49 T 11-10-2018 AMK58_07645 63ad3d44e7ae840252660a987d16ed2a 340 Gene3D G3DSA:3.40.190.10 122 228 1.5E-49 T 11-10-2018 AMK58_07645 63ad3d44e7ae840252660a987d16ed2a 340 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 36 254 2.9E-27 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMK58_01880 8742ed7d92f10cce3f4afee05be8b067 685 SUPERFAMILY SSF52540 24 403 5.18E-29 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_01880 8742ed7d92f10cce3f4afee05be8b067 685 Pfam PF00270 DEAD/DEAH box helicase 15 159 2.2E-10 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMK58_01880 8742ed7d92f10cce3f4afee05be8b067 685 Pfam PF00271 Helicase conserved C-terminal domain 317 390 1.6E-4 T 11-10-2018 IPR001650 Helicase, C-terminal AMK58_01880 8742ed7d92f10cce3f4afee05be8b067 685 Gene3D G3DSA:3.40.50.300 230 406 4.7E-31 T 11-10-2018 AMK58_01880 8742ed7d92f10cce3f4afee05be8b067 685 SMART SM00382 27 170 5.8E-4 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_01880 8742ed7d92f10cce3f4afee05be8b067 685 SMART SM00487 10 204 2.8E-11 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMK58_01880 8742ed7d92f10cce3f4afee05be8b067 685 Gene3D G3DSA:3.40.50.300 3 190 1.2E-24 T 11-10-2018 AMK58_01880 8742ed7d92f10cce3f4afee05be8b067 685 SMART SM00490 307 390 3.5E-7 T 11-10-2018 IPR001650 Helicase, C-terminal AMK58_20350 c0d52d9e5d8ab785f437e7ee8fa8ef89 405 SUPERFAMILY SSF53383 4 399 6.68E-121 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_20350 c0d52d9e5d8ab785f437e7ee8fa8ef89 405 Gene3D G3DSA:3.90.1150.10 14 389 6.7E-144 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_20350 c0d52d9e5d8ab785f437e7ee8fa8ef89 405 Hamap MF_01689 Ornithine aminotransferase [rocD]. 5 400 61.434 T 11-10-2018 IPR034757 Ornithine aminotransferase, bacterial type GO:0004587 KEGG: 00330+2.6.1.13|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|MetaCyc: PWY-6922 AMK58_20350 c0d52d9e5d8ab785f437e7ee8fa8ef89 405 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 224 261 - T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMK58_20350 c0d52d9e5d8ab785f437e7ee8fa8ef89 405 Pfam PF00202 Aminotransferase class-III 17 399 6.3E-121 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMK58_20350 c0d52d9e5d8ab785f437e7ee8fa8ef89 405 TIGRFAM TIGR01885 Orn_aminotrans: ornithine--oxo-acid transaminase 7 398 4.9E-163 T 11-10-2018 IPR010164 Ornithine aminotransferase GO:0004587 KEGG: 00330+2.6.1.13|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AMK58_20350 c0d52d9e5d8ab785f437e7ee8fa8ef89 405 Gene3D G3DSA:3.40.640.10 59 309 6.7E-144 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_20350 c0d52d9e5d8ab785f437e7ee8fa8ef89 405 PIRSF PIRSF000521 13 157 3.3E-7 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMK58_20350 c0d52d9e5d8ab785f437e7ee8fa8ef89 405 PIRSF PIRSF000521 176 402 9.1E-36 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMK58_02015 c91460787c4ba7ec6908f85c9e40b066 627 Pfam PF09731 Mitochondrial inner membrane protein 422 604 4.8E-18 T 11-10-2018 IPR019133 Mitochondrial inner membrane protein Mitofilin Reactome: R-HSA-8949613 AMK58_07445 905540cc44fb9b676b0d368558225912 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 132 146 9.5E-57 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMK58_07445 905540cc44fb9b676b0d368558225912 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 253 269 9.5E-57 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMK58_07445 905540cc44fb9b676b0d368558225912 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 162 181 9.5E-57 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMK58_07445 905540cc44fb9b676b0d368558225912 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 278 293 9.5E-57 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMK58_07445 905540cc44fb9b676b0d368558225912 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 200 219 9.5E-57 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMK58_07445 905540cc44fb9b676b0d368558225912 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 308 327 9.5E-57 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMK58_07445 905540cc44fb9b676b0d368558225912 337 SUPERFAMILY SSF51569 9 336 4.1E-137 T 11-10-2018 AMK58_07445 905540cc44fb9b676b0d368558225912 337 Pfam PF00490 Delta-aminolevulinic acid dehydratase 15 332 5.0E-136 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMK58_07445 905540cc44fb9b676b0d368558225912 337 PIRSF PIRSF001415 5 337 1.7E-142 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMK58_07445 905540cc44fb9b676b0d368558225912 337 Gene3D G3DSA:3.20.20.70 4 337 8.4E-140 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_07445 905540cc44fb9b676b0d368558225912 337 SMART SM01004 12 334 2.5E-224 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMK58_07445 905540cc44fb9b676b0d368558225912 337 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 253 265 - T 11-10-2018 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMK58_22695 0ffcede52d97ee99f82374adf810dbac 957 Pfam PF13183 4Fe-4S dicluster domain 540 613 1.6E-10 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMK58_22695 0ffcede52d97ee99f82374adf810dbac 957 Gene3D G3DSA:1.10.45.10 478 514 1.2E-6 T 11-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 AMK58_22695 0ffcede52d97ee99f82374adf810dbac 957 SUPERFAMILY SSF55103 271 523 1.96E-56 T 11-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 AMK58_22695 0ffcede52d97ee99f82374adf810dbac 957 Pfam PF02913 FAD linked oxidases, C-terminal domain 268 516 1.1E-54 T 11-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 AMK58_22695 0ffcede52d97ee99f82374adf810dbac 957 Gene3D G3DSA:3.30.43.10 4 92 8.4E-11 T 11-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 AMK58_22695 0ffcede52d97ee99f82374adf810dbac 957 Pfam PF02754 Cysteine-rich domain 841 918 0.015 T 11-10-2018 IPR004017 Cysteine-rich domain AMK58_22695 0ffcede52d97ee99f82374adf810dbac 957 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 542 553 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMK58_22695 0ffcede52d97ee99f82374adf810dbac 957 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 599 610 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMK58_22695 0ffcede52d97ee99f82374adf810dbac 957 SUPERFAMILY SSF56176 7 266 3.64E-56 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMK58_22695 0ffcede52d97ee99f82374adf810dbac 957 Gene3D G3DSA:3.30.70.2740 394 477 1.1E-8 T 11-10-2018 AMK58_22695 0ffcede52d97ee99f82374adf810dbac 957 Pfam PF01565 FAD binding domain 43 179 5.0E-29 T 11-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMK58_22695 0ffcede52d97ee99f82374adf810dbac 957 SUPERFAMILY SSF46548 503 626 1.53E-22 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AMK58_22695 0ffcede52d97ee99f82374adf810dbac 957 Gene3D G3DSA:1.10.1060.10 515 631 3.8E-9 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AMK58_00160 29f95c970e06775448b7362f954a8093 286 SUPERFAMILY SSF53335 7 285 6.95E-84 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_00160 29f95c970e06775448b7362f954a8093 286 Gene3D G3DSA:3.40.50.150 57 286 2.3E-74 T 11-10-2018 AMK58_00160 29f95c970e06775448b7362f954a8093 286 TIGRFAM TIGR00417 speE: spermidine synthase 8 280 9.2E-97 T 11-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 AMK58_00160 29f95c970e06775448b7362f954a8093 286 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 7 286 37.69 T 11-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 AMK58_00160 29f95c970e06775448b7362f954a8093 286 Pfam PF17284 Spermidine synthase tetramerisation domain 7 59 2.3E-11 T 11-10-2018 IPR035246 Spermidine synthase, tetramerisation domain KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 AMK58_00160 29f95c970e06775448b7362f954a8093 286 Gene3D G3DSA:2.30.140.10 4 56 4.1E-17 T 11-10-2018 IPR037163 Spermidine synthase, tetramerisation domain superfamily KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 AMK58_00160 29f95c970e06775448b7362f954a8093 286 Pfam PF01564 Spermine/spermidine synthase domain 62 241 1.0E-55 T 11-10-2018 AMK58_18565 d677de212f265c2b73953e658fa82c91 342 Pfam PF02541 Ppx/GppA phosphatase family 40 335 5.7E-45 T 11-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 AMK58_18565 d677de212f265c2b73953e658fa82c91 342 SUPERFAMILY SSF53067 26 147 1.22E-36 T 11-10-2018 AMK58_18565 d677de212f265c2b73953e658fa82c91 342 Gene3D G3DSA:3.30.420.40 10 146 2.2E-41 T 11-10-2018 AMK58_18565 d677de212f265c2b73953e658fa82c91 342 Gene3D G3DSA:3.30.420.150 147 339 7.1E-49 T 11-10-2018 AMK58_18565 d677de212f265c2b73953e658fa82c91 342 SUPERFAMILY SSF53067 152 337 1.62E-35 T 11-10-2018 AMK58_25320 52ce5952969df744f242a509c9ad4d14 206 TIGRFAM TIGR02161 napC_nirT: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family 9 193 4.9E-97 T 11-10-2018 IPR011885 Periplasmic nitrate reductase c-type cytochrome, NapC/NirT GO:0016021|GO:0019333|GO:0020037 AMK58_25320 52ce5952969df744f242a509c9ad4d14 206 PIRSF PIRSF000013 2 202 1.1E-109 T 11-10-2018 IPR024717 Denitrification system component NapC/NirT/NrfH GO:0016021|GO:0019333|GO:0020037 AMK58_25320 52ce5952969df744f242a509c9ad4d14 206 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 18 192 1.7E-76 T 11-10-2018 IPR005126 NapC/NirT cytochrome c, N-terminal AMK58_25320 52ce5952969df744f242a509c9ad4d14 206 Gene3D G3DSA:1.10.3820.10 19 195 4.8E-37 T 11-10-2018 IPR038266 NapC/NirT cytochrome c superfamily AMK58_25320 52ce5952969df744f242a509c9ad4d14 206 SUPERFAMILY SSF48695 16 195 2.68E-65 T 11-10-2018 IPR036280 Multiheme cytochrome superfamily AMK58_19620 657313c64dd42296a4f13f1682bba711 325 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 3 312 1.3E-85 T 11-10-2018 IPR007296 Domain of unknown function DUF403 AMK58_08385 3d47ffa6498aabd16a9fcd64db157ee2 306 Gene3D G3DSA:3.40.1790.10 2 305 5.1E-134 T 11-10-2018 IPR022830 Indigoidine synthase A-like GO:0016798 KEGG: 00240+4.2.1.70|MetaCyc: PWY-6019 AMK58_08385 3d47ffa6498aabd16a9fcd64db157ee2 306 Hamap MF_01876 Pseudouridine-5'-phosphate glycosidase [psuG]. 9 303 45.018 T 11-10-2018 IPR007342 Pseudouridine-5'-phosphate glycosidase GO:0016798 KEGG: 00240+4.2.1.70|MetaCyc: PWY-6019 AMK58_08385 3d47ffa6498aabd16a9fcd64db157ee2 306 Pfam PF04227 Indigoidine synthase A like protein 10 299 7.8E-132 T 11-10-2018 IPR007342 Pseudouridine-5'-phosphate glycosidase GO:0016798 KEGG: 00240+4.2.1.70|MetaCyc: PWY-6019 AMK58_08385 3d47ffa6498aabd16a9fcd64db157ee2 306 SUPERFAMILY SSF110581 2 301 1.19E-114 T 11-10-2018 IPR022830 Indigoidine synthase A-like GO:0016798 KEGG: 00240+4.2.1.70|MetaCyc: PWY-6019 AMK58_12260 94c03374284ad16c5195dbff8dee041b 564 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 388 549 4.7E-40 T 11-10-2018 IPR000160 GGDEF domain AMK58_12260 94c03374284ad16c5195dbff8dee041b 564 SMART SM00267 380 550 8.5E-55 T 11-10-2018 IPR000160 GGDEF domain AMK58_12260 94c03374284ad16c5195dbff8dee041b 564 SUPERFAMILY SSF55781 241 380 8.07E-9 T 11-10-2018 AMK58_12260 94c03374284ad16c5195dbff8dee041b 564 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 119 170 6.7E-6 T 11-10-2018 IPR000014 PAS domain AMK58_12260 94c03374284ad16c5195dbff8dee041b 564 SUPERFAMILY SSF55073 396 549 3.06E-43 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_12260 94c03374284ad16c5195dbff8dee041b 564 Gene3D G3DSA:3.30.450.20 110 242 1.5E-9 T 11-10-2018 AMK58_12260 94c03374284ad16c5195dbff8dee041b 564 SUPERFAMILY SSF55785 106 225 4.71E-12 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_12260 94c03374284ad16c5195dbff8dee041b 564 Gene3D G3DSA:3.30.70.270 385 550 4.2E-50 T 11-10-2018 AMK58_12260 94c03374284ad16c5195dbff8dee041b 564 Gene3D G3DSA:3.30.450.40 245 384 2.4E-9 T 11-10-2018 IPR029016 GAF-like domain superfamily AMK58_12260 94c03374284ad16c5195dbff8dee041b 564 SMART SM00065 259 388 0.0089 T 11-10-2018 IPR003018 GAF domain GO:0005515 AMK58_12260 94c03374284ad16c5195dbff8dee041b 564 Pfam PF00990 Diguanylate cyclase, GGDEF domain 393 545 1.2E-38 T 11-10-2018 IPR000160 GGDEF domain AMK58_28860 1f148fa270328e1691ec9ee5c9e5276a 390 Pfam PF01757 Acyltransferase family 17 352 3.5E-24 T 11-10-2018 IPR002656 Acyltransferase 3 GO:0016747 AMK58_00210 43b370642aa510d081a84aa50a1938f6 410 Gene3D G3DSA:3.40.50.2000 212 364 2.4E-13 T 11-10-2018 AMK58_00210 43b370642aa510d081a84aa50a1938f6 410 SUPERFAMILY SSF53756 9 361 1.45E-15 T 11-10-2018 AMK58_27330 c52d859795d8083d6bf30f70b1e220e7 376 Gene3D G3DSA:3.40.50.12710 1 374 6.9E-113 T 11-10-2018 IPR038375 Protein arginine methyltransferase NDUFAF7 superfamily Reactome: R-HSA-6799198 AMK58_27330 c52d859795d8083d6bf30f70b1e220e7 376 Pfam PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase 67 306 1.7E-72 T 11-10-2018 IPR003788 Protein arginine methyltransferase NDUFAF7 Reactome: R-HSA-6799198 AMK58_27330 c52d859795d8083d6bf30f70b1e220e7 376 SUPERFAMILY SSF53335 9 370 4.95E-111 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_01460 15b606866bb738933366b9d144ec8d92 199 SUPERFAMILY SSF52141 4 193 2.39E-57 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMK58_01460 15b606866bb738933366b9d144ec8d92 199 Pfam PF03167 Uracil DNA glycosylase superfamily 32 186 4.1E-23 T 11-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMK58_01460 15b606866bb738933366b9d144ec8d92 199 Gene3D G3DSA:3.40.470.10 2 196 8.0E-68 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMK58_01460 15b606866bb738933366b9d144ec8d92 199 SMART SM00987 29 187 3.9E-29 T 11-10-2018 AMK58_01460 15b606866bb738933366b9d144ec8d92 199 SMART SM00986 29 187 3.9E-29 T 11-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMK58_14860 367724e2eeb398243cdb732569747a7a 506 Gene3D G3DSA:3.90.780.10 310 505 1.9E-45 T 11-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMK58_14860 367724e2eeb398243cdb732569747a7a 506 PRINTS PR01607 Apyrase family signature 367 390 4.1E-7 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMK58_14860 367724e2eeb398243cdb732569747a7a 506 PRINTS PR01607 Apyrase family signature 440 459 4.1E-7 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMK58_14860 367724e2eeb398243cdb732569747a7a 506 Gene3D G3DSA:3.60.21.10 33 309 9.5E-31 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like AMK58_14860 367724e2eeb398243cdb732569747a7a 506 SUPERFAMILY SSF55816 308 504 6.15E-45 T 11-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMK58_14860 367724e2eeb398243cdb732569747a7a 506 Pfam PF02872 5'-nucleotidase, C-terminal domain 310 466 2.4E-39 T 11-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMK58_14860 367724e2eeb398243cdb732569747a7a 506 SUPERFAMILY SSF56300 40 304 4.11E-35 T 11-10-2018 AMK58_25635 a98a1e6f677707f716682093fe56d30a 320 Pfam PF10134 Replication initiator protein A 34 265 8.3E-53 T 11-10-2018 IPR018777 Replication initiator protein A AMK58_13770 ea6b7d768a0b574f6b359bca473e60bd 388 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 12 348 3.8E-85 T 11-10-2018 IPR004559 Oxygen-independent coproporphyrinogen III oxidase-like GO:0004109|GO:0005737|GO:0006779|GO:0055114 AMK58_13770 ea6b7d768a0b574f6b359bca473e60bd 388 Pfam PF04055 Radical SAM superfamily 14 179 3.6E-18 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMK58_13770 ea6b7d768a0b574f6b359bca473e60bd 388 Gene3D G3DSA:3.80.30.20 1 306 2.2E-90 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe AMK58_13770 ea6b7d768a0b574f6b359bca473e60bd 388 SMART SM00729 9 228 1.8E-43 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMK58_13770 ea6b7d768a0b574f6b359bca473e60bd 388 Pfam PF06969 HemN C-terminal domain 313 376 3.7E-11 T 11-10-2018 IPR010723 HemN, C-terminal AMK58_13770 ea6b7d768a0b574f6b359bca473e60bd 388 SUPERFAMILY SSF102114 6 387 3.27E-105 T 11-10-2018 AMK58_11850 d7506d1e1e9770c748a667670891201c 535 Gene3D G3DSA:2.40.320.10 5 208 4.9E-25 T 11-10-2018 AMK58_11850 d7506d1e1e9770c748a667670891201c 535 SUPERFAMILY SSF55154 8 217 1.13E-37 T 11-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 AMK58_11850 d7506d1e1e9770c748a667670891201c 535 Pfam PF01928 CYTH domain 8 206 9.3E-23 T 11-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 AMK58_11850 d7506d1e1e9770c748a667670891201c 535 SMART SM01118 8 212 4.3E-30 T 11-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 AMK58_11850 d7506d1e1e9770c748a667670891201c 535 SMART SM00880 237 513 3.5E-75 T 11-10-2018 IPR007899 CHAD domain AMK58_11850 d7506d1e1e9770c748a667670891201c 535 Gene3D G3DSA:1.40.20.10 216 530 7.2E-83 T 11-10-2018 IPR038186 CHAD domain superfamily AMK58_11850 d7506d1e1e9770c748a667670891201c 535 Pfam PF05235 CHAD domain 238 478 1.2E-59 T 11-10-2018 IPR007899 CHAD domain AMK58_09790 32f6b9aaecbe49a2b777343caec8f1a0 260 SUPERFAMILY SSF48150 28 241 1.73E-43 T 11-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 AMK58_09790 32f6b9aaecbe49a2b777343caec8f1a0 260 Gene3D G3DSA:1.10.1670.10 25 239 9.6E-60 T 11-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 AMK58_09790 32f6b9aaecbe49a2b777343caec8f1a0 260 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 54 184 1.7E-7 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AMK58_09790 32f6b9aaecbe49a2b777343caec8f1a0 260 SMART SM00478 58 221 3.4E-15 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AMK58_09790 32f6b9aaecbe49a2b777343caec8f1a0 260 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 223 239 - T 11-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 AMK58_09790 32f6b9aaecbe49a2b777343caec8f1a0 260 PIRSF PIRSF001435 20 247 2.5E-36 T 11-10-2018 AMK58_09790 32f6b9aaecbe49a2b777343caec8f1a0 260 Gene3D G3DSA:1.10.340.30 43 163 9.6E-60 T 11-10-2018 AMK58_19170 e7005e8225f5da87c3b71b5444947117 403 PIRSF PIRSF000443 5 398 1.0E-138 T 11-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 AMK58_19170 e7005e8225f5da87c3b71b5444947117 403 TIGRFAM TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase 32 388 8.6E-142 T 11-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 AMK58_19170 e7005e8225f5da87c3b71b5444947117 403 Gene3D G3DSA:1.10.1740.110 196 302 2.6E-139 T 11-10-2018 AMK58_19170 e7005e8225f5da87c3b71b5444947117 403 SUPERFAMILY SSF53474 32 389 2.65E-103 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_19170 e7005e8225f5da87c3b71b5444947117 403 Gene3D G3DSA:3.40.50.1820 36 377 2.6E-139 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_19170 e7005e8225f5da87c3b71b5444947117 403 Hamap MF_00296 Homoserine O-acetyltransferase [metXA]. 7 389 31.784 T 11-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 AMK58_19170 e7005e8225f5da87c3b71b5444947117 403 Pfam PF00561 alpha/beta hydrolase fold 61 376 1.5E-30 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_15715 c5efb3bb9ed9470c152b77fb17bc291b 282 SMART SM00346 23 113 7.0E-13 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMK58_15715 c5efb3bb9ed9470c152b77fb17bc291b 282 SUPERFAMILY SSF46785 24 97 3.21E-12 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_15715 c5efb3bb9ed9470c152b77fb17bc291b 282 Pfam PF01614 Bacterial transcriptional regulator 142 262 1.4E-14 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal AMK58_15715 c5efb3bb9ed9470c152b77fb17bc291b 282 Gene3D G3DSA:1.10.10.10 21 95 6.5E-16 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_15715 c5efb3bb9ed9470c152b77fb17bc291b 282 Gene3D G3DSA:3.30.450.40 96 270 1.7E-32 T 11-10-2018 IPR029016 GAF-like domain superfamily AMK58_15715 c5efb3bb9ed9470c152b77fb17bc291b 282 SUPERFAMILY SSF55781 81 265 3.01E-30 T 11-10-2018 AMK58_15715 c5efb3bb9ed9470c152b77fb17bc291b 282 Pfam PF09339 IclR helix-turn-helix domain 28 74 1.7E-9 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMK58_03795 16df8529ab6db8f434ebca1e944c645c 220 SUPERFAMILY SSF52172 2 128 3.98E-25 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_03795 16df8529ab6db8f434ebca1e944c645c 220 SUPERFAMILY SSF46894 157 218 1.84E-19 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMK58_03795 16df8529ab6db8f434ebca1e944c645c 220 Pfam PF00196 Bacterial regulatory proteins, luxR family 162 216 4.1E-19 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_03795 16df8529ab6db8f434ebca1e944c645c 220 SMART SM00421 160 217 1.2E-23 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_03795 16df8529ab6db8f434ebca1e944c645c 220 Pfam PF00072 Response regulator receiver domain 3 115 1.4E-17 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_03795 16df8529ab6db8f434ebca1e944c645c 220 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 177 1.7E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_03795 16df8529ab6db8f434ebca1e944c645c 220 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 193 205 1.7E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_03795 16df8529ab6db8f434ebca1e944c645c 220 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 177 193 1.7E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_03795 16df8529ab6db8f434ebca1e944c645c 220 Gene3D G3DSA:3.40.50.12740 1 219 4.9E-50 T 11-10-2018 AMK58_03795 16df8529ab6db8f434ebca1e944c645c 220 SMART SM00448 1 115 1.3E-19 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_22440 75bc2cc520e9b7cc7b24dcdc9667c109 387 SUPERFAMILY SSF52821 249 380 1.19E-16 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily AMK58_22440 75bc2cc520e9b7cc7b24dcdc9667c109 387 TIGRFAM TIGR03865 PQQ_CXXCW: PQQ-dependent catabolism-associated CXXCW motif protein 221 380 3.0E-59 T 11-10-2018 IPR022376 PQQ-dependent catabolism-associated CXXCW motif AMK58_22440 75bc2cc520e9b7cc7b24dcdc9667c109 387 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 2 209 1.6E-18 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMK58_22440 75bc2cc520e9b7cc7b24dcdc9667c109 387 Gene3D G3DSA:3.40.190.10 62 177 9.5E-17 T 11-10-2018 AMK58_22440 75bc2cc520e9b7cc7b24dcdc9667c109 387 SUPERFAMILY SSF53850 2 209 7.97E-24 T 11-10-2018 AMK58_22440 75bc2cc520e9b7cc7b24dcdc9667c109 387 Gene3D G3DSA:3.40.250.10 241 380 9.4E-12 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily AMK58_22440 75bc2cc520e9b7cc7b24dcdc9667c109 387 TIGRFAM TIGR03871 ABC_peri_MoxJ_2: quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein 2 213 1.3E-76 T 11-10-2018 IPR022448 Quinoprotein dehydrogenase-associated AMK58_22440 75bc2cc520e9b7cc7b24dcdc9667c109 387 Gene3D G3DSA:3.40.190.10 2 207 9.5E-17 T 11-10-2018 AMK58_22440 75bc2cc520e9b7cc7b24dcdc9667c109 387 SMART SM00062 1 213 1.8E-23 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMK58_07875 c255461a07370106c29f5bedbbddcc46 155 Gene3D G3DSA:3.40.50.1000 37 142 3.4E-5 T 11-10-2018 IPR023214 HAD superfamily AMK58_07875 c255461a07370106c29f5bedbbddcc46 155 SUPERFAMILY SSF56784 6 140 3.67E-10 T 11-10-2018 IPR036412 HAD-like superfamily AMK58_09880 5cb6a39ae3e67d1b5c3c91910625ed3e 196 Pfam PF00583 Acetyltransferase (GNAT) family 65 169 5.5E-14 T 11-10-2018 IPR000182 GNAT domain AMK58_09880 5cb6a39ae3e67d1b5c3c91910625ed3e 196 Gene3D G3DSA:3.40.630.30 7 185 2.2E-33 T 11-10-2018 AMK58_09880 5cb6a39ae3e67d1b5c3c91910625ed3e 196 SUPERFAMILY SSF55729 4 178 2.16E-28 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_15540 fa2d33182918cba74124ac28a803a4d5 302 SMART SM00387 205 302 2.2E-8 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_15540 fa2d33182918cba74124ac28a803a4d5 302 SMART SM00911 109 199 0.0075 T 11-10-2018 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 AMK58_15540 fa2d33182918cba74124ac28a803a4d5 302 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 208 301 2.7E-5 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_15540 fa2d33182918cba74124ac28a803a4d5 302 Gene3D G3DSA:3.30.565.10 165 302 1.3E-23 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_15540 fa2d33182918cba74124ac28a803a4d5 302 SUPERFAMILY SSF55874 199 301 1.01E-14 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_15540 fa2d33182918cba74124ac28a803a4d5 302 Pfam PF07568 Histidine kinase 109 180 4.0E-17 T 11-10-2018 IPR011495 Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain AMK58_15540 fa2d33182918cba74124ac28a803a4d5 302 Gene3D G3DSA:3.30.450.20 42 161 1.3E-5 T 11-10-2018 AMK58_12345 6671cd942e737b52de266e4a4517a799 481 Pfam PF01943 Polysaccharide biosynthesis protein 11 271 6.1E-29 T 11-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 AMK58_12345 6671cd942e737b52de266e4a4517a799 481 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 325 467 4.6E-17 T 11-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain AMK58_02615 4a7e9875545c2260ee1b254252f44140 559 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 474 503 2.3E-22 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_02615 4a7e9875545c2260ee1b254252f44140 559 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 397 424 2.3E-22 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_02615 4a7e9875545c2260ee1b254252f44140 559 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 426 455 2.3E-22 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_02615 4a7e9875545c2260ee1b254252f44140 559 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 4 29 2.3E-22 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_02615 4a7e9875545c2260ee1b254252f44140 559 SMART SM00283 299 553 1.6E-44 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_02615 4a7e9875545c2260ee1b254252f44140 559 Pfam PF00672 HAMP domain 212 258 5.6E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_02615 4a7e9875545c2260ee1b254252f44140 559 SUPERFAMILY SSF58104 239 552 3.14E-60 T 11-10-2018 AMK58_02615 4a7e9875545c2260ee1b254252f44140 559 Gene3D G3DSA:1.10.287.950 269 553 1.4E-53 T 11-10-2018 AMK58_02615 4a7e9875545c2260ee1b254252f44140 559 Pfam PF12729 Four helix bundle sensory module for signal transduction 4 183 8.0E-33 T 11-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain AMK58_02615 4a7e9875545c2260ee1b254252f44140 559 SMART SM00304 210 263 2.1E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_02615 4a7e9875545c2260ee1b254252f44140 559 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 365 521 3.0E-30 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_02615 4a7e9875545c2260ee1b254252f44140 559 Gene3D G3DSA:1.20.1480.50 170 268 1.9E-13 T 11-10-2018 AMK58_13590 1f7822a1da70eef80d6e3fa0a6c4d1bf 112 Gene3D G3DSA:3.40.50.150 37 112 1.1E-10 T 11-10-2018 AMK58_13590 1f7822a1da70eef80d6e3fa0a6c4d1bf 112 SUPERFAMILY SSF53335 60 111 6.39E-11 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_17085 3427b05107607282598a2d90a65cf073 162 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 14 152 7.9E-42 T 11-10-2018 AMK58_17085 3427b05107607282598a2d90a65cf073 162 Gene3D G3DSA:3.40.30.10 74 162 3.5E-23 T 11-10-2018 AMK58_17085 3427b05107607282598a2d90a65cf073 162 SUPERFAMILY SSF52833 6 155 4.58E-47 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_17085 3427b05107607282598a2d90a65cf073 162 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 113 131 - T 11-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_17085 3427b05107607282598a2d90a65cf073 162 PIRSF PIRSF000216 2 162 4.9E-46 T 11-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_17085 3427b05107607282598a2d90a65cf073 162 Gene3D G3DSA:1.10.10.1590 6 72 2.1E-12 T 11-10-2018 AMK58_14275 7e1cc5cb30eba65b3f37d92bd7cb6869 298 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 181 196 2.6E-9 T 11-10-2018 AMK58_14275 7e1cc5cb30eba65b3f37d92bd7cb6869 298 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 82 97 2.6E-9 T 11-10-2018 AMK58_14275 7e1cc5cb30eba65b3f37d92bd7cb6869 298 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 205 223 2.6E-9 T 11-10-2018 AMK58_14275 7e1cc5cb30eba65b3f37d92bd7cb6869 298 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 51 69 2.6E-9 T 11-10-2018 AMK58_14275 7e1cc5cb30eba65b3f37d92bd7cb6869 298 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 270 283 2.6E-9 T 11-10-2018 AMK58_14275 7e1cc5cb30eba65b3f37d92bd7cb6869 298 Gene3D G3DSA:3.40.50.1980 121 290 1.0E-51 T 11-10-2018 AMK58_14275 7e1cc5cb30eba65b3f37d92bd7cb6869 298 SUPERFAMILY SSF53807 32 289 2.0E-47 T 11-10-2018 AMK58_14275 7e1cc5cb30eba65b3f37d92bd7cb6869 298 Gene3D G3DSA:3.40.50.1980 30 117 1.8E-18 T 11-10-2018 AMK58_14275 7e1cc5cb30eba65b3f37d92bd7cb6869 298 Pfam PF01497 Periplasmic binding protein 34 266 2.6E-21 T 11-10-2018 IPR002491 ABC transporter periplasmic binding domain AMK58_25815 f05a14276bca9fd9121eb221f7676709 434 Gene3D G3DSA:3.50.50.60 38 390 1.3E-76 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_25815 f05a14276bca9fd9121eb221f7676709 434 Gene3D G3DSA:3.30.9.10 132 353 1.3E-76 T 11-10-2018 AMK58_25815 f05a14276bca9fd9121eb221f7676709 434 SUPERFAMILY SSF51905 37 413 9.93E-46 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_25815 f05a14276bca9fd9121eb221f7676709 434 Pfam PF01266 FAD dependent oxidoreductase 38 390 2.2E-58 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMK58_06710 a2ff65becefde8f55cc26cdfbac234e3 156 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 22 135 3.7E-11 T 11-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 AMK58_06710 a2ff65becefde8f55cc26cdfbac234e3 156 Gene3D G3DSA:3.10.129.10 7 141 1.9E-49 T 11-10-2018 AMK58_06710 a2ff65becefde8f55cc26cdfbac234e3 156 SUPERFAMILY SSF54637 6 137 3.2E-27 T 11-10-2018 IPR029069 HotDog domain superfamily AMK58_06710 a2ff65becefde8f55cc26cdfbac234e3 156 Pfam PF03061 Thioesterase superfamily 51 126 1.1E-9 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AMK58_28320 07866ac65d80440964d34690936304cf 296 Gene3D G3DSA:3.90.1580.10 32 295 4.1E-61 T 11-10-2018 AMK58_28320 07866ac65d80440964d34690936304cf 296 SUPERFAMILY SSF56436 43 292 5.89E-54 T 11-10-2018 IPR016187 C-type lectin fold AMK58_28320 07866ac65d80440964d34690936304cf 296 Pfam PF03781 Sulfatase-modifying factor enzyme 1 43 292 3.8E-43 T 11-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 AMK58_10810 b936432dcdaff6446c100c0efae8a6e0 281 SUPERFAMILY SSF56300 10 250 1.28E-35 T 11-10-2018 AMK58_10810 b936432dcdaff6446c100c0efae8a6e0 281 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 13 225 8.2E-14 T 11-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 AMK58_10810 b936432dcdaff6446c100c0efae8a6e0 281 Gene3D G3DSA:3.60.21.10 11 243 7.4E-20 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like AMK58_29055 b07d52bf2dee7c74f74720545cc517a7 609 SUPERFAMILY SSF53335 99 259 2.09E-20 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_29055 b07d52bf2dee7c74f74720545cc517a7 609 Pfam PF13489 Methyltransferase domain 110 252 2.3E-10 T 11-10-2018 AMK58_29055 b07d52bf2dee7c74f74720545cc517a7 609 Gene3D G3DSA:3.40.50.150 89 261 1.1E-19 T 11-10-2018 AMK58_10510 e835ef6ccbdbf19215fa7a0573f3508d 146 PRINTS PR00598 Bacterial regulatory protein MarR family signature 76 91 1.2E-5 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_10510 e835ef6ccbdbf19215fa7a0573f3508d 146 PRINTS PR00598 Bacterial regulatory protein MarR family signature 95 111 1.2E-5 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_10510 e835ef6ccbdbf19215fa7a0573f3508d 146 PRINTS PR00598 Bacterial regulatory protein MarR family signature 125 145 1.2E-5 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_10510 e835ef6ccbdbf19215fa7a0573f3508d 146 Pfam PF01047 MarR family 42 99 7.1E-13 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_10510 e835ef6ccbdbf19215fa7a0573f3508d 146 SMART SM00347 35 135 5.9E-21 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_10510 e835ef6ccbdbf19215fa7a0573f3508d 146 Gene3D G3DSA:1.10.10.10 4 146 5.7E-33 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_10510 e835ef6ccbdbf19215fa7a0573f3508d 146 SUPERFAMILY SSF46785 7 145 6.23E-30 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_15350 024fb2d8506eb1027f51765c21cd7272 580 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 281 287 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMK58_15350 024fb2d8506eb1027f51765c21cd7272 580 Pfam PF12161 HsdM N-terminal domain 6 138 8.2E-22 T 11-10-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain AMK58_15350 024fb2d8506eb1027f51765c21cd7272 580 Pfam PF02384 N-6 DNA Methylase 152 450 7.7E-61 T 11-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 AMK58_15350 024fb2d8506eb1027f51765c21cd7272 580 SUPERFAMILY SSF53335 6 578 8.5E-126 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_15350 024fb2d8506eb1027f51765c21cd7272 580 Gene3D G3DSA:3.40.50.150 152 465 5.3E-96 T 11-10-2018 AMK58_15350 024fb2d8506eb1027f51765c21cd7272 580 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 173 189 2.9E-11 T 11-10-2018 AMK58_15350 024fb2d8506eb1027f51765c21cd7272 580 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 278 290 2.9E-11 T 11-10-2018 AMK58_15350 024fb2d8506eb1027f51765c21cd7272 580 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 206 220 2.9E-11 T 11-10-2018 AMK58_17435 1b16dfc50ace59c567419cd39a4965df 608 SUPERFAMILY SSF53850 55 596 4.16E-131 T 11-10-2018 AMK58_17435 1b16dfc50ace59c567419cd39a4965df 608 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 106 510 8.9E-81 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain AMK58_17435 1b16dfc50ace59c567419cd39a4965df 608 PIRSF PIRSF002741 3 600 1.8E-106 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMK58_17435 1b16dfc50ace59c567419cd39a4965df 608 Gene3D G3DSA:3.40.190.10 33 595 4.9E-261 T 11-10-2018 AMK58_17435 1b16dfc50ace59c567419cd39a4965df 608 Gene3D G3DSA:3.10.105.10 316 575 4.9E-261 T 11-10-2018 AMK58_15785 a1bdf59163479b2a306ab8c06e0d3621 110 SMART SM00507 7 58 7.7E-6 T 11-10-2018 IPR003615 HNH nuclease AMK58_15785 a1bdf59163479b2a306ab8c06e0d3621 110 Pfam PF14279 HNH endonuclease 19 66 4.3E-10 T 11-10-2018 IPR029471 HNH endonuclease 5 AMK58_15785 a1bdf59163479b2a306ab8c06e0d3621 110 Gene3D G3DSA:3.30.40.60 5 83 3.6E-17 T 11-10-2018 AMK58_08750 92c109abb8be33d5f13ed7164915245f 118 Pfam PF08274 PhnA Zinc-Ribbon 6 31 2.9E-14 T 11-10-2018 IPR013987 PhnA protein, N-terminal AMK58_08750 92c109abb8be33d5f13ed7164915245f 118 TIGRFAM TIGR00686 phnA: putative alkylphosphonate utilization operon protein PhnA 6 118 2.6E-42 T 11-10-2018 IPR004624 PhnA protein AMK58_08750 92c109abb8be33d5f13ed7164915245f 118 Pfam PF03831 PhnA domain 49 118 1.6E-32 T 11-10-2018 IPR013988 PhnA protein, C-terminal AMK58_08750 92c109abb8be33d5f13ed7164915245f 118 Gene3D G3DSA:2.20.25.10 5 42 7.1E-16 T 11-10-2018 AMK58_08750 92c109abb8be33d5f13ed7164915245f 118 SUPERFAMILY SSF57783 6 35 2.38E-12 T 11-10-2018 AMK58_08750 92c109abb8be33d5f13ed7164915245f 118 SUPERFAMILY SSF82057 47 118 4.58E-26 T 11-10-2018 AMK58_08750 92c109abb8be33d5f13ed7164915245f 118 Gene3D G3DSA:2.30.30.40 47 118 1.7E-32 T 11-10-2018 AMK58_21405 a672db636eb25c1f5eb324b7efaf86ab 363 Gene3D G3DSA:1.10.3720.10 150 353 2.7E-21 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_21405 a672db636eb25c1f5eb324b7efaf86ab 363 SUPERFAMILY SSF161098 150 348 3.92E-23 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_21405 a672db636eb25c1f5eb324b7efaf86ab 363 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 174 355 2.5E-20 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_19720 4ca147f1a6c050ec3cca561a5bd193fd 766 Gene3D G3DSA:3.20.70.20 2 567 1.5E-184 T 11-10-2018 AMK58_19720 4ca147f1a6c050ec3cca561a5bd193fd 766 Pfam PF02867 Ribonucleotide reductase, barrel domain 84 551 1.4E-133 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMK58_19720 4ca147f1a6c050ec3cca561a5bd193fd 766 PRINTS PR01183 Ribonucleotide reductase large chain signature 159 178 1.5E-24 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMK58_19720 4ca147f1a6c050ec3cca561a5bd193fd 766 PRINTS PR01183 Ribonucleotide reductase large chain signature 299 322 1.5E-24 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMK58_19720 4ca147f1a6c050ec3cca561a5bd193fd 766 PRINTS PR01183 Ribonucleotide reductase large chain signature 420 447 1.5E-24 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMK58_19720 4ca147f1a6c050ec3cca561a5bd193fd 766 PRINTS PR01183 Ribonucleotide reductase large chain signature 337 359 1.5E-24 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMK58_19720 4ca147f1a6c050ec3cca561a5bd193fd 766 PRINTS PR01183 Ribonucleotide reductase large chain signature 365 388 1.5E-24 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMK58_19720 4ca147f1a6c050ec3cca561a5bd193fd 766 TIGRFAM TIGR02504 NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 10 559 8.7E-171 T 11-10-2018 IPR013344 Ribonucleotide reductase, adenosylcobalamin-dependent GO:0000166|GO:0004748|GO:0031419|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMK58_19720 4ca147f1a6c050ec3cca561a5bd193fd 766 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 7 77 2.2E-9 T 11-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMK58_19720 4ca147f1a6c050ec3cca561a5bd193fd 766 SUPERFAMILY SSF51998 5 572 1.98E-166 T 11-10-2018 AMK58_11555 9a0d3b8e75c15834eae3d82c8e9fed33 522 PRINTS PR00162 Rieske 2Fe-2S subunit signature 467 478 9.0E-6 T 11-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 AMK58_11555 9a0d3b8e75c15834eae3d82c8e9fed33 522 PRINTS PR00162 Rieske 2Fe-2S subunit signature 500 512 9.0E-6 T 11-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 AMK58_11555 9a0d3b8e75c15834eae3d82c8e9fed33 522 PRINTS PR00162 Rieske 2Fe-2S subunit signature 488 500 9.0E-6 T 11-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 AMK58_11555 9a0d3b8e75c15834eae3d82c8e9fed33 522 Gene3D G3DSA:3.30.9.10 134 348 1.7E-50 T 11-10-2018 AMK58_11555 9a0d3b8e75c15834eae3d82c8e9fed33 522 Pfam PF00355 Rieske [2Fe-2S] domain 440 513 4.4E-11 T 11-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMK58_11555 9a0d3b8e75c15834eae3d82c8e9fed33 522 Gene3D G3DSA:3.50.50.60 41 390 1.7E-50 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_11555 9a0d3b8e75c15834eae3d82c8e9fed33 522 Gene3D G3DSA:2.102.10.10 437 522 9.6E-23 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMK58_11555 9a0d3b8e75c15834eae3d82c8e9fed33 522 SUPERFAMILY SSF50022 437 515 5.89E-22 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMK58_11555 9a0d3b8e75c15834eae3d82c8e9fed33 522 SUPERFAMILY SSF51905 40 398 8.29E-35 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_11555 9a0d3b8e75c15834eae3d82c8e9fed33 522 Pfam PF01266 FAD dependent oxidoreductase 41 389 7.2E-46 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMK58_12655 96c28847cf42364e54b38f58d477f13a 661 Gene3D G3DSA:2.40.340.10 360 434 1.7E-15 T 11-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMK58_12655 96c28847cf42364e54b38f58d477f13a 661 Gene3D G3DSA:2.170.190.11 72 173 3.9E-99 T 11-10-2018 AMK58_12655 96c28847cf42364e54b38f58d477f13a 661 Gene3D G3DSA:3.40.980.10 207 349 3.9E-99 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily AMK58_12655 96c28847cf42364e54b38f58d477f13a 661 Pfam PF03454 MoeA C-terminal region (domain IV) 368 432 5.7E-13 T 11-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMK58_12655 96c28847cf42364e54b38f58d477f13a 661 SUPERFAMILY SSF53218 209 355 6.81E-37 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily AMK58_12655 96c28847cf42364e54b38f58d477f13a 661 SUPERFAMILY SSF53850 462 655 2.24E-11 T 11-10-2018 AMK58_12655 96c28847cf42364e54b38f58d477f13a 661 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 284 319 - T 11-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 AMK58_12655 96c28847cf42364e54b38f58d477f13a 661 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 209 346 3.0E-26 T 11-10-2018 IPR001453 MoaB/Mog domain AMK58_12655 96c28847cf42364e54b38f58d477f13a 661 Pfam PF03453 MoeA N-terminal region (domain I and II) 31 199 1.8E-40 T 11-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMK58_12655 96c28847cf42364e54b38f58d477f13a 661 SUPERFAMILY SSF63867 362 434 6.54E-14 T 11-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMK58_12655 96c28847cf42364e54b38f58d477f13a 661 Gene3D G3DSA:3.90.105.10 49 206 3.9E-99 T 11-10-2018 AMK58_12655 96c28847cf42364e54b38f58d477f13a 661 Pfam PF12727 PBP superfamily domain 464 642 2.7E-54 T 11-10-2018 IPR024370 PBP domain AMK58_12655 96c28847cf42364e54b38f58d477f13a 661 SUPERFAMILY SSF63882 30 208 1.18E-46 T 11-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMK58_12655 96c28847cf42364e54b38f58d477f13a 661 Pfam PF00994 Probable molybdopterin binding domain 212 349 4.5E-23 T 11-10-2018 IPR001453 MoaB/Mog domain AMK58_12655 96c28847cf42364e54b38f58d477f13a 661 SMART SM00852 212 350 1.8E-35 T 11-10-2018 IPR001453 MoaB/Mog domain AMK58_02245 397939a251dcba5da153e8d8b5d9703a 376 Pfam PF08448 PAS fold 20 108 7.5E-7 T 11-10-2018 IPR013656 PAS fold-4 AMK58_02245 397939a251dcba5da153e8d8b5d9703a 376 PRINTS PR00344 Bacterial sensor protein C-terminal signature 287 301 9.1E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_02245 397939a251dcba5da153e8d8b5d9703a 376 PRINTS PR00344 Bacterial sensor protein C-terminal signature 346 359 9.1E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_02245 397939a251dcba5da153e8d8b5d9703a 376 PRINTS PR00344 Bacterial sensor protein C-terminal signature 322 340 9.1E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_02245 397939a251dcba5da153e8d8b5d9703a 376 PRINTS PR00344 Bacterial sensor protein C-terminal signature 305 315 9.1E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_02245 397939a251dcba5da153e8d8b5d9703a 376 Pfam PF00512 His Kinase A (phospho-acceptor) domain 144 207 4.2E-8 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_02245 397939a251dcba5da153e8d8b5d9703a 376 SUPERFAMILY SSF47384 129 207 3.14E-11 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_02245 397939a251dcba5da153e8d8b5d9703a 376 SUPERFAMILY SSF55785 7 107 3.24E-9 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_02245 397939a251dcba5da153e8d8b5d9703a 376 Gene3D G3DSA:3.30.565.10 206 365 1.0E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_02245 397939a251dcba5da153e8d8b5d9703a 376 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 252 360 5.5E-18 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_02245 397939a251dcba5da153e8d8b5d9703a 376 Gene3D G3DSA:1.10.287.130 109 205 8.9E-12 T 11-10-2018 AMK58_02245 397939a251dcba5da153e8d8b5d9703a 376 SMART SM00387 251 362 1.2E-25 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_02245 397939a251dcba5da153e8d8b5d9703a 376 SMART SM00388 142 207 6.3E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_02245 397939a251dcba5da153e8d8b5d9703a 376 SUPERFAMILY SSF55874 198 364 3.14E-37 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_02245 397939a251dcba5da153e8d8b5d9703a 376 Gene3D G3DSA:3.30.450.20 5 108 4.8E-7 T 11-10-2018 AMK58_14075 194a554ab63d49adc2d92eace32a8ce2 421 Pfam PF01547 Bacterial extracellular solute-binding protein 54 331 4.8E-32 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMK58_14075 194a554ab63d49adc2d92eace32a8ce2 421 SUPERFAMILY SSF53850 52 412 6.92E-65 T 11-10-2018 AMK58_14075 194a554ab63d49adc2d92eace32a8ce2 421 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 147 164 - T 11-10-2018 IPR006061 Solute-binding family 1, conserved site GO:0055085 AMK58_14075 194a554ab63d49adc2d92eace32a8ce2 421 Gene3D G3DSA:3.40.190.10 49 420 1.6E-60 T 11-10-2018 AMK58_03945 671a152526a3a5cf5e2a6b425238831a 498 SUPERFAMILY SSF53623 108 320 8.5E-55 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMK58_03945 671a152526a3a5cf5e2a6b425238831a 498 Gene3D G3DSA:3.40.1190.10 89 320 1.6E-66 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMK58_03945 671a152526a3a5cf5e2a6b425238831a 498 SUPERFAMILY SSF63418 21 101 2.35E-20 T 11-10-2018 IPR035911 MurE/MurF, N-terminal AMK58_03945 671a152526a3a5cf5e2a6b425238831a 498 SUPERFAMILY SSF53244 329 464 3.43E-30 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMK58_03945 671a152526a3a5cf5e2a6b425238831a 498 Pfam PF01225 Mur ligase family, catalytic domain 29 74 5.8E-12 T 11-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 AMK58_03945 671a152526a3a5cf5e2a6b425238831a 498 Gene3D G3DSA:3.90.190.20 326 477 7.7E-33 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMK58_03945 671a152526a3a5cf5e2a6b425238831a 498 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 5 465 32.366 T 11-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMK58_03945 671a152526a3a5cf5e2a6b425238831a 498 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 33 464 1.1E-117 T 11-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMK58_03945 671a152526a3a5cf5e2a6b425238831a 498 Gene3D G3DSA:3.40.1390.10 1 79 8.2E-23 T 11-10-2018 AMK58_03945 671a152526a3a5cf5e2a6b425238831a 498 Pfam PF08245 Mur ligase middle domain 113 302 2.4E-49 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 AMK58_03945 671a152526a3a5cf5e2a6b425238831a 498 Pfam PF02875 Mur ligase family, glutamate ligase domain 336 406 2.7E-9 T 11-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 AMK58_20335 6d3fb301deac05eb2054157458b02a1d 216 Gene3D G3DSA:1.10.357.10 5 202 9.9E-45 T 11-10-2018 AMK58_20335 6d3fb301deac05eb2054157458b02a1d 216 SUPERFAMILY SSF48498 85 199 2.91E-19 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMK58_20335 6d3fb301deac05eb2054157458b02a1d 216 SUPERFAMILY SSF46689 8 78 1.59E-18 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_20335 6d3fb301deac05eb2054157458b02a1d 216 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 1.3E-8 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_20335 6d3fb301deac05eb2054157458b02a1d 216 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 1.3E-8 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_20335 6d3fb301deac05eb2054157458b02a1d 216 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 60 8.3E-16 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_20335 6d3fb301deac05eb2054157458b02a1d 216 ProSitePatterns PS01081 TetR-type HTH domain signature. 30 60 - T 11-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMK58_21880 fb454f016cba69b10f134312f3ae27f1 423 ProSitePatterns PS00157 Ribulose bisphosphate carboxylase large chain active site. 181 189 - T 11-10-2018 IPR020878 Ribulose bisphosphate carboxylase, large chain, active site GO:0000287|GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 AMK58_21880 fb454f016cba69b10f134312f3ae27f1 423 Gene3D G3DSA:3.20.20.110 134 422 2.5E-105 T 11-10-2018 IPR036376 Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 AMK58_21880 fb454f016cba69b10f134312f3ae27f1 423 Gene3D G3DSA:3.30.70.150 1 133 9.9E-48 T 11-10-2018 IPR036422 RuBisCO large subunit, N-terminal domain superfamily GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 AMK58_21880 fb454f016cba69b10f134312f3ae27f1 423 Pfam PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain 16 129 5.3E-7 T 11-10-2018 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 AMK58_21880 fb454f016cba69b10f134312f3ae27f1 423 SUPERFAMILY SSF51649 133 420 1.44E-91 T 11-10-2018 IPR036376 Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 AMK58_21880 fb454f016cba69b10f134312f3ae27f1 423 Pfam PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain 139 419 3.6E-79 T 11-10-2018 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 AMK58_21880 fb454f016cba69b10f134312f3ae27f1 423 SUPERFAMILY SSF54966 3 133 1.57E-36 T 11-10-2018 IPR036422 RuBisCO large subunit, N-terminal domain superfamily GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 AMK58_08495 b4bd2de768ffe13e4db78cdcc8d6b5d3 484 SUPERFAMILY SSF52540 1 237 4.87E-55 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_08495 b4bd2de768ffe13e4db78cdcc8d6b5d3 484 Hamap MF_00028 Cobyric acid synthase [cobQ]. 1 484 203.706 T 11-10-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 AMK58_08495 b4bd2de768ffe13e4db78cdcc8d6b5d3 484 TIGRFAM TIGR00313 cobQ: cobyric acid synthase CobQ 4 478 1.2E-139 T 11-10-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 AMK58_08495 b4bd2de768ffe13e4db78cdcc8d6b5d3 484 Gene3D G3DSA:3.40.50.880 257 430 9.0E-14 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_08495 b4bd2de768ffe13e4db78cdcc8d6b5d3 484 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 252 436 5.1E-59 T 11-10-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 AMK58_08495 b4bd2de768ffe13e4db78cdcc8d6b5d3 484 Gene3D G3DSA:3.40.50.300 1 239 4.7E-52 T 11-10-2018 AMK58_08495 b4bd2de768ffe13e4db78cdcc8d6b5d3 484 SUPERFAMILY SSF52317 253 443 4.27E-35 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_08495 b4bd2de768ffe13e4db78cdcc8d6b5d3 484 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 4 234 5.1E-18 T 11-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain AMK58_19245 264727ace23815b23a8fb1467f925364 375 TIGRFAM TIGR00391 hydA: hydrogenase (NiFe) small subunit (hydA) 12 365 1.3E-132 T 11-10-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 AMK58_19245 264727ace23815b23a8fb1467f925364 375 Gene3D G3DSA:3.40.50.700 45 224 2.0E-64 T 11-10-2018 IPR037024 [NiFe]-hydrogenase, small subunit, N-terminal domain superfamily AMK58_19245 264727ace23815b23a8fb1467f925364 375 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 254 280 1.2E-66 T 11-10-2018 AMK58_19245 264727ace23815b23a8fb1467f925364 375 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 212 229 1.2E-66 T 11-10-2018 AMK58_19245 264727ace23815b23a8fb1467f925364 375 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 157 181 1.2E-66 T 11-10-2018 AMK58_19245 264727ace23815b23a8fb1467f925364 375 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 45 67 1.2E-66 T 11-10-2018 AMK58_19245 264727ace23815b23a8fb1467f925364 375 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 68 92 1.2E-66 T 11-10-2018 AMK58_19245 264727ace23815b23a8fb1467f925364 375 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 114 137 1.2E-66 T 11-10-2018 AMK58_19245 264727ace23815b23a8fb1467f925364 375 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 186 209 1.2E-66 T 11-10-2018 AMK58_19245 264727ace23815b23a8fb1467f925364 375 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 230 248 1.2E-66 T 11-10-2018 AMK58_19245 264727ace23815b23a8fb1467f925364 375 Pfam PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal 225 305 1.0E-27 T 11-10-2018 IPR027394 Cytochrome-c3 hydrogenase, C-terminal AMK58_19245 264727ace23815b23a8fb1467f925364 375 SUPERFAMILY SSF56770 48 304 3.36E-80 T 11-10-2018 AMK58_19245 264727ace23815b23a8fb1467f925364 375 PIRSF PIRSF000310 7 366 6.3E-122 T 11-10-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 AMK58_19245 264727ace23815b23a8fb1467f925364 375 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 60 205 3.9E-27 T 11-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_19245 264727ace23815b23a8fb1467f925364 375 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 14 43 5.0E-4 T 11-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal AMK58_19245 264727ace23815b23a8fb1467f925364 375 Gene3D G3DSA:4.10.480.10 227 350 3.3E-31 T 11-10-2018 IPR037148 [NiFe]-hydrogenase, small subunit, C-terminal domain superfamily AMK58_27050 b73563cc08bcd82502d9ef8d994d3395 359 Pfam PF01116 Fructose-bisphosphate aldolase class-II 16 355 9.8E-80 T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AMK58_27050 b73563cc08bcd82502d9ef8d994d3395 359 SUPERFAMILY SSF51569 3 355 5.86E-104 T 11-10-2018 AMK58_27050 b73563cc08bcd82502d9ef8d994d3395 359 PIRSF PIRSF001359 12 356 6.6E-72 T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AMK58_27050 b73563cc08bcd82502d9ef8d994d3395 359 TIGRFAM TIGR01520 FruBisAldo_II_A: fructose-bisphosphate aldolase, class II 6 355 7.9E-135 T 11-10-2018 IPR006411 Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 AMK58_27050 b73563cc08bcd82502d9ef8d994d3395 359 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 13 355 4.3E-88 T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AMK58_27050 b73563cc08bcd82502d9ef8d994d3395 359 Gene3D G3DSA:3.20.20.70 1 356 2.6E-114 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_27050 b73563cc08bcd82502d9ef8d994d3395 359 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 169 180 - T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AMK58_26675 1c6176e9aad6e1032bc032402a98d008 211 Gene3D G3DSA:3.40.50.2020 3 211 4.8E-76 T 11-10-2018 AMK58_26675 1c6176e9aad6e1032bc032402a98d008 211 Pfam PF14681 Uracil phosphoribosyltransferase 8 210 3.3E-72 T 11-10-2018 AMK58_26675 1c6176e9aad6e1032bc032402a98d008 211 SUPERFAMILY SSF53271 6 209 6.42E-69 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like AMK58_26675 1c6176e9aad6e1032bc032402a98d008 211 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 6 210 2.6E-80 T 11-10-2018 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 AMK58_26675 1c6176e9aad6e1032bc032402a98d008 211 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 5 211 44.208 T 11-10-2018 IPR034332 Uracil phosphoribosyltransferase, bacterial-type KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 AMK58_11875 00d5af6f3f3e91425ae21528e5ce25cd 621 SUPERFAMILY SSF48019 267 393 4.85E-28 T 11-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 AMK58_11875 00d5af6f3f3e91425ae21528e5ce25cd 621 Pfam PF12362 DNA polymerase III gamma and tau subunits C terminal 467 580 1.5E-38 T 11-10-2018 IPR022107 DNA polymerase III, subunit gamma/ tau, C-terminal AMK58_11875 00d5af6f3f3e91425ae21528e5ce25cd 621 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 22 382 4.8E-127 T 11-10-2018 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 AMK58_11875 00d5af6f3f3e91425ae21528e5ce25cd 621 Gene3D G3DSA:1.10.8.60 27 264 1.2E-102 T 11-10-2018 AMK58_11875 00d5af6f3f3e91425ae21528e5ce25cd 621 SUPERFAMILY SSF52540 22 265 8.91E-54 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_11875 00d5af6f3f3e91425ae21528e5ce25cd 621 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 256 397 2.1E-51 T 11-10-2018 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 AMK58_11875 00d5af6f3f3e91425ae21528e5ce25cd 621 Pfam PF13177 DNA polymerase III, delta subunit 39 202 1.5E-37 T 11-10-2018 AMK58_11875 00d5af6f3f3e91425ae21528e5ce25cd 621 SMART SM00382 56 203 1.9E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_11875 00d5af6f3f3e91425ae21528e5ce25cd 621 Gene3D G3DSA:1.20.272.10 266 385 1.3E-14 T 11-10-2018 AMK58_11875 00d5af6f3f3e91425ae21528e5ce25cd 621 Gene3D G3DSA:3.40.50.300 32 201 1.2E-102 T 11-10-2018 AMK58_09830 c4cbdc40935bcf8339d5caece1cd6eaa 653 Pfam PF04546 Sigma-70, non-essential region 155 385 9.3E-53 T 11-10-2018 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMK58_09830 c4cbdc40935bcf8339d5caece1cd6eaa 653 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 415 651 3.9E-120 T 11-10-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 AMK58_09830 c4cbdc40935bcf8339d5caece1cd6eaa 653 Gene3D G3DSA:1.10.220.120 29 85 4.5E-23 T 11-10-2018 AMK58_09830 c4cbdc40935bcf8339d5caece1cd6eaa 653 Pfam PF03979 Sigma-70 factor, region 1.1 30 89 1.1E-22 T 11-10-2018 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 AMK58_09830 c4cbdc40935bcf8339d5caece1cd6eaa 653 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 415 640 3.7E-39 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMK58_09830 c4cbdc40935bcf8339d5caece1cd6eaa 653 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 12 652 43.864 T 11-10-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 AMK58_09830 c4cbdc40935bcf8339d5caece1cd6eaa 653 SUPERFAMILY SSF88659 492 565 1.87E-20 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMK58_09830 c4cbdc40935bcf8339d5caece1cd6eaa 653 PRINTS PR00046 Major sigma-70 factor signature 443 456 3.4E-31 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_09830 c4cbdc40935bcf8339d5caece1cd6eaa 653 PRINTS PR00046 Major sigma-70 factor signature 591 603 3.4E-31 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_09830 c4cbdc40935bcf8339d5caece1cd6eaa 653 PRINTS PR00046 Major sigma-70 factor signature 627 638 3.4E-31 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_09830 c4cbdc40935bcf8339d5caece1cd6eaa 653 PRINTS PR00046 Major sigma-70 factor signature 467 475 3.4E-31 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_09830 c4cbdc40935bcf8339d5caece1cd6eaa 653 PRINTS PR00046 Major sigma-70 factor signature 612 627 3.4E-31 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_09830 c4cbdc40935bcf8339d5caece1cd6eaa 653 Pfam PF00140 Sigma-70 factor, region 1.2 113 145 1.2E-13 T 11-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMK58_09830 c4cbdc40935bcf8339d5caece1cd6eaa 653 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 612 638 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_09830 c4cbdc40935bcf8339d5caece1cd6eaa 653 Pfam PF04542 Sigma-70 region 2 419 488 1.9E-21 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMK58_09830 c4cbdc40935bcf8339d5caece1cd6eaa 653 Pfam PF04539 Sigma-70 region 3 498 573 2.5E-29 T 11-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 AMK58_09830 c4cbdc40935bcf8339d5caece1cd6eaa 653 SUPERFAMILY SSF88946 130 486 9.58E-98 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMK58_09830 c4cbdc40935bcf8339d5caece1cd6eaa 653 Gene3D G3DSA:1.10.10.10 492 567 4.3E-32 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_09830 c4cbdc40935bcf8339d5caece1cd6eaa 653 Pfam PF04545 Sigma-70, region 4 587 640 3.5E-19 T 11-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 AMK58_09830 c4cbdc40935bcf8339d5caece1cd6eaa 653 Gene3D G3DSA:1.10.10.10 569 653 1.2E-36 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_09830 c4cbdc40935bcf8339d5caece1cd6eaa 653 Gene3D G3DSA:1.10.601.10 128 488 1.2E-120 T 11-10-2018 AMK58_09830 c4cbdc40935bcf8339d5caece1cd6eaa 653 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 443 456 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMK58_09830 c4cbdc40935bcf8339d5caece1cd6eaa 653 SUPERFAMILY SSF88659 549 651 1.18E-26 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMK58_06360 5d778eb1c4539e92408261fdf801b2cb 738 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 288 481 3.1E-25 T 11-10-2018 IPR004477 ComEC/Rec2-related protein AMK58_06360 5d778eb1c4539e92408261fdf801b2cb 738 Pfam PF03772 Competence protein 267 550 2.2E-60 T 11-10-2018 IPR004477 ComEC/Rec2-related protein AMK58_06360 5d778eb1c4539e92408261fdf801b2cb 738 Pfam PF13567 Domain of unknown function (DUF4131) 67 221 1.1E-13 T 11-10-2018 IPR025405 Domain of unknown function DUF4131 AMK58_24490 3ed0f3277b8a241ef3269de5d288b95f 1084 SUPERFAMILY SSF82693 575 674 3.92E-8 T 11-10-2018 AMK58_24490 3ed0f3277b8a241ef3269de5d288b95f 1084 SUPERFAMILY SSF82693 45 138 1.62E-16 T 11-10-2018 AMK58_24490 3ed0f3277b8a241ef3269de5d288b95f 1084 SUPERFAMILY SSF82693 156 339 8.89E-8 T 11-10-2018 AMK58_24490 3ed0f3277b8a241ef3269de5d288b95f 1084 SUPERFAMILY SSF82866 827 1059 4.32E-42 T 11-10-2018 AMK58_24490 3ed0f3277b8a241ef3269de5d288b95f 1084 Gene3D G3DSA:3.30.70.1430 577 685 1.9E-217 T 11-10-2018 AMK58_24490 3ed0f3277b8a241ef3269de5d288b95f 1084 SUPERFAMILY SSF82714 192 273 9.68E-14 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_24490 3ed0f3277b8a241ef3269de5d288b95f 1084 Pfam PF00873 AcrB/AcrD/AcrF family 906 1058 3.2E-33 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_24490 3ed0f3277b8a241ef3269de5d288b95f 1084 Pfam PF00873 AcrB/AcrD/AcrF family 11 847 1.7E-105 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_24490 3ed0f3277b8a241ef3269de5d288b95f 1084 Gene3D G3DSA:3.30.2090.10 736 825 1.9E-217 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_24490 3ed0f3277b8a241ef3269de5d288b95f 1084 Gene3D G3DSA:3.30.70.1440 686 903 1.9E-217 T 11-10-2018 AMK58_24490 3ed0f3277b8a241ef3269de5d288b95f 1084 Gene3D G3DSA:3.30.70.1320 139 344 1.9E-217 T 11-10-2018 AMK58_24490 3ed0f3277b8a241ef3269de5d288b95f 1084 Gene3D G3DSA:1.20.1640.10 20 527 1.9E-217 T 11-10-2018 AMK58_24490 3ed0f3277b8a241ef3269de5d288b95f 1084 Gene3D G3DSA:3.30.2090.10 187 277 1.9E-217 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_24490 3ed0f3277b8a241ef3269de5d288b95f 1084 SUPERFAMILY SSF82866 307 508 3.01E-39 T 11-10-2018 AMK58_24490 3ed0f3277b8a241ef3269de5d288b95f 1084 Gene3D G3DSA:1.20.1640.10 528 1055 1.9E-217 T 11-10-2018 AMK58_24490 3ed0f3277b8a241ef3269de5d288b95f 1084 PRINTS PR00702 Acriflavin resistance protein family signature 482 505 1.7E-27 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_24490 3ed0f3277b8a241ef3269de5d288b95f 1084 PRINTS PR00702 Acriflavin resistance protein family signature 457 480 1.7E-27 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_24490 3ed0f3277b8a241ef3269de5d288b95f 1084 PRINTS PR00702 Acriflavin resistance protein family signature 15 39 1.7E-27 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_24490 3ed0f3277b8a241ef3269de5d288b95f 1084 PRINTS PR00702 Acriflavin resistance protein family signature 402 426 1.7E-27 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_24490 3ed0f3277b8a241ef3269de5d288b95f 1084 PRINTS PR00702 Acriflavin resistance protein family signature 43 61 1.7E-27 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_24490 3ed0f3277b8a241ef3269de5d288b95f 1084 PRINTS PR00702 Acriflavin resistance protein family signature 374 395 1.7E-27 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_24490 3ed0f3277b8a241ef3269de5d288b95f 1084 Gene3D G3DSA:3.30.70.1430 45 833 1.9E-217 T 11-10-2018 AMK58_06205 2ca7cac4ab9dcd6d2e6a85c66c3d0e75 199 Gene3D G3DSA:1.10.340.30 3 168 1.8E-43 T 11-10-2018 AMK58_06205 2ca7cac4ab9dcd6d2e6a85c66c3d0e75 199 SUPERFAMILY SSF48150 4 168 1.52E-53 T 11-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 AMK58_06205 2ca7cac4ab9dcd6d2e6a85c66c3d0e75 199 Pfam PF03352 Methyladenine glycosylase 17 121 4.5E-41 T 11-10-2018 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 AMK58_24240 a0ea68e94d4cc7ea0abdfaa7dc3b1423 232 Pfam PF00027 Cyclic nucleotide-binding domain 32 119 1.0E-16 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_24240 a0ea68e94d4cc7ea0abdfaa7dc3b1423 232 SMART SM00100 13 131 1.0E-16 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_24240 a0ea68e94d4cc7ea0abdfaa7dc3b1423 232 Pfam PF13545 Crp-like helix-turn-helix domain 152 223 2.5E-13 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMK58_24240 a0ea68e94d4cc7ea0abdfaa7dc3b1423 232 Gene3D G3DSA:2.60.120.10 2 146 1.9E-30 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_24240 a0ea68e94d4cc7ea0abdfaa7dc3b1423 232 SMART SM00419 169 217 1.3E-8 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMK58_24240 a0ea68e94d4cc7ea0abdfaa7dc3b1423 232 Gene3D G3DSA:1.10.10.10 147 232 6.3E-16 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_24240 a0ea68e94d4cc7ea0abdfaa7dc3b1423 232 SUPERFAMILY SSF51206 7 142 1.1E-29 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like AMK58_24240 a0ea68e94d4cc7ea0abdfaa7dc3b1423 232 SUPERFAMILY SSF46785 148 225 3.29E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_24645 745591823304613629ca177cd3fbd407 202 SUPERFAMILY SSF52218 1 190 3.26E-24 T 11-10-2018 IPR029039 Flavoprotein-like superfamily AMK58_24645 745591823304613629ca177cd3fbd407 202 Gene3D G3DSA:3.40.50.360 1 199 2.5E-16 T 11-10-2018 IPR029039 Flavoprotein-like superfamily AMK58_24645 745591823304613629ca177cd3fbd407 202 Pfam PF03358 NADPH-dependent FMN reductase 7 161 9.4E-22 T 11-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AMK58_27180 f008fc379da3d46511ef6ec24b2e4135 329 Gene3D G3DSA:3.40.50.300 3 325 5.3E-96 T 11-10-2018 AMK58_27180 f008fc379da3d46511ef6ec24b2e4135 329 SMART SM00382 34 233 5.5E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_27180 f008fc379da3d46511ef6ec24b2e4135 329 SUPERFAMILY SSF52540 5 254 5.21E-65 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_27180 f008fc379da3d46511ef6ec24b2e4135 329 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 235 299 6.8E-18 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMK58_27180 f008fc379da3d46511ef6ec24b2e4135 329 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 233 317 2.5E-23 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMK58_27180 f008fc379da3d46511ef6ec24b2e4135 329 Pfam PF00005 ABC transporter 26 183 3.3E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_27180 f008fc379da3d46511ef6ec24b2e4135 329 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_01025 0eca41b7c6383b5b7a60529d63e435bb 501 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 356 483 1.0E-24 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_01025 0eca41b7c6383b5b7a60529d63e435bb 501 Pfam PF00512 His Kinase A (phospho-acceptor) domain 244 308 2.0E-18 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_01025 0eca41b7c6383b5b7a60529d63e435bb 501 Gene3D G3DSA:1.10.287.130 242 309 2.9E-24 T 11-10-2018 AMK58_01025 0eca41b7c6383b5b7a60529d63e435bb 501 SUPERFAMILY SSF55874 299 485 4.45E-46 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_01025 0eca41b7c6383b5b7a60529d63e435bb 501 SMART SM00388 243 310 1.4E-19 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_01025 0eca41b7c6383b5b7a60529d63e435bb 501 PRINTS PR00344 Bacterial sensor protein C-terminal signature 428 438 1.0E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_01025 0eca41b7c6383b5b7a60529d63e435bb 501 PRINTS PR00344 Bacterial sensor protein C-terminal signature 410 424 1.0E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_01025 0eca41b7c6383b5b7a60529d63e435bb 501 PRINTS PR00344 Bacterial sensor protein C-terminal signature 445 463 1.0E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_01025 0eca41b7c6383b5b7a60529d63e435bb 501 PRINTS PR00344 Bacterial sensor protein C-terminal signature 469 482 1.0E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_01025 0eca41b7c6383b5b7a60529d63e435bb 501 SUPERFAMILY SSF47384 227 309 1.79E-19 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_01025 0eca41b7c6383b5b7a60529d63e435bb 501 Gene3D G3DSA:3.30.565.10 316 489 7.4E-44 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_01025 0eca41b7c6383b5b7a60529d63e435bb 501 Gene3D G3DSA:3.30.450.20 103 241 3.6E-7 T 11-10-2018 AMK58_01025 0eca41b7c6383b5b7a60529d63e435bb 501 SMART SM00387 356 485 5.6E-38 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_09845 1fb7592990208ccc8804224b466e5936 391 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 17 386 1.1E-139 T 11-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMK58_09845 1fb7592990208ccc8804224b466e5936 391 Pfam PF00117 Glutamine amidotransferase class-I 206 383 2.8E-46 T 11-10-2018 IPR017926 Glutamine amidotransferase AMK58_09845 1fb7592990208ccc8804224b466e5936 391 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 16 143 7.5E-50 T 11-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMK58_09845 1fb7592990208ccc8804224b466e5936 391 SUPERFAMILY SSF52317 167 387 6.11E-62 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_09845 1fb7592990208ccc8804224b466e5936 391 Gene3D G3DSA:3.40.50.880 165 387 1.1E-74 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_09845 1fb7592990208ccc8804224b466e5936 391 PRINTS PR00097 Anthranilate synthase component II signature 360 373 1.2E-6 T 11-10-2018 AMK58_09845 1fb7592990208ccc8804224b466e5936 391 PRINTS PR00097 Anthranilate synthase component II signature 275 286 1.2E-6 T 11-10-2018 AMK58_09845 1fb7592990208ccc8804224b466e5936 391 PRINTS PR00097 Anthranilate synthase component II signature 246 255 1.2E-6 T 11-10-2018 AMK58_09845 1fb7592990208ccc8804224b466e5936 391 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 204 218 2.3E-37 T 11-10-2018 AMK58_09845 1fb7592990208ccc8804224b466e5936 391 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 243 257 2.3E-37 T 11-10-2018 AMK58_09845 1fb7592990208ccc8804224b466e5936 391 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 275 291 2.3E-37 T 11-10-2018 AMK58_09845 1fb7592990208ccc8804224b466e5936 391 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 292 309 2.3E-37 T 11-10-2018 AMK58_09845 1fb7592990208ccc8804224b466e5936 391 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 317 328 2.3E-37 T 11-10-2018 AMK58_09845 1fb7592990208ccc8804224b466e5936 391 SMART SM01097 14 144 3.8E-85 T 11-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMK58_09845 1fb7592990208ccc8804224b466e5936 391 Gene3D G3DSA:3.50.30.20 14 163 1.2E-52 T 11-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMK58_09845 1fb7592990208ccc8804224b466e5936 391 PRINTS PR00096 Glutamine amidotransferase superfamily signature 246 255 3.0E-12 T 11-10-2018 AMK58_09845 1fb7592990208ccc8804224b466e5936 391 PRINTS PR00096 Glutamine amidotransferase superfamily signature 360 373 3.0E-12 T 11-10-2018 AMK58_09845 1fb7592990208ccc8804224b466e5936 391 PRINTS PR00096 Glutamine amidotransferase superfamily signature 275 286 3.0E-12 T 11-10-2018 AMK58_09845 1fb7592990208ccc8804224b466e5936 391 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 14 389 48.775 T 11-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMK58_09845 1fb7592990208ccc8804224b466e5936 391 SUPERFAMILY SSF52021 15 159 2.35E-54 T 11-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMK58_19795 44962f4ad98294095724fe6e829d3e11 212 SUPERFAMILY SSF110857 40 154 8.89E-13 T 11-10-2018 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily AMK58_19795 44962f4ad98294095724fe6e829d3e11 212 Gene3D G3DSA:3.10.490.10 28 203 7.2E-11 T 11-10-2018 AMK58_19795 44962f4ad98294095724fe6e829d3e11 212 Pfam PF04752 ChaC-like protein 40 209 1.3E-51 T 11-10-2018 IPR006840 Glutathione-specific gamma-glutamylcyclotransferase GO:0003839|GO:0006751 KEGG: 00480+4.3.2.7|MetaCyc: PWY-7942|Reactome: R-HSA-174403 AMK58_20525 b38c921d10a8f1ec4433cae61d2803e9 419 Gene3D G3DSA:3.20.20.80 53 413 4.1E-55 T 11-10-2018 AMK58_20525 b38c921d10a8f1ec4433cae61d2803e9 419 Pfam PF00331 Glycosyl hydrolase family 10 56 410 1.2E-41 T 11-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 AMK58_20525 b38c921d10a8f1ec4433cae61d2803e9 419 SUPERFAMILY SSF51445 52 414 1.89E-53 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily AMK58_20525 b38c921d10a8f1ec4433cae61d2803e9 419 PRINTS PR00134 Glycosyl hydrolase family 10 signature 194 205 6.0E-6 T 11-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 AMK58_20525 b38c921d10a8f1ec4433cae61d2803e9 419 PRINTS PR00134 Glycosyl hydrolase family 10 signature 253 264 6.0E-6 T 11-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 AMK58_20525 b38c921d10a8f1ec4433cae61d2803e9 419 PRINTS PR00134 Glycosyl hydrolase family 10 signature 286 298 6.0E-6 T 11-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 AMK58_20525 b38c921d10a8f1ec4433cae61d2803e9 419 SMART SM00633 99 412 3.4E-6 T 11-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 AMK58_09170 948b7ee6e81406db64b23d544045981e 105 SUPERFAMILY SSF103481 6 102 7.85E-20 T 11-10-2018 AMK58_09170 948b7ee6e81406db64b23d544045981e 105 Gene3D G3DSA:1.10.3730.20 1 105 3.1E-32 T 11-10-2018 AMK58_09170 948b7ee6e81406db64b23d544045981e 105 Pfam PF00893 Small Multidrug Resistance protein 1 93 7.9E-29 T 11-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 AMK58_03975 2da67963c3f603a67da0dace8d9bccd3 236 SUPERFAMILY SSF55846 11 166 2.09E-55 T 11-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 AMK58_03975 2da67963c3f603a67da0dace8d9bccd3 236 SUPERFAMILY SSF47090 186 231 1.65E-8 T 11-10-2018 IPR036365 PGBD-like superfamily AMK58_03975 2da67963c3f603a67da0dace8d9bccd3 236 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 25 150 5.2E-32 T 11-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 AMK58_03975 2da67963c3f603a67da0dace8d9bccd3 236 SMART SM00644 13 150 2.4E-39 T 11-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 AMK58_03975 2da67963c3f603a67da0dace8d9bccd3 236 Gene3D G3DSA:1.10.101.10 169 234 3.6E-7 T 11-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 AMK58_03975 2da67963c3f603a67da0dace8d9bccd3 236 Gene3D G3DSA:3.40.80.10 6 162 2.4E-51 T 11-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 AMK58_12725 f8c72af51f95e1c99c243970345c7753 442 Gene3D G3DSA:3.40.50.2300 154 296 6.0E-74 T 11-10-2018 AMK58_12725 f8c72af51f95e1c99c243970345c7753 442 Gene3D G3DSA:3.40.50.2300 42 364 6.0E-74 T 11-10-2018 AMK58_12725 f8c72af51f95e1c99c243970345c7753 442 SUPERFAMILY SSF53822 38 406 1.51E-47 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMK58_12725 f8c72af51f95e1c99c243970345c7753 442 Pfam PF13458 Periplasmic binding protein 34 402 2.5E-76 T 11-10-2018 IPR028081 Leucine-binding protein domain AMK58_24500 9c5e8470e10b5cf5d0418bcc2f970625 116 SUPERFAMILY SSF46785 17 104 1.98E-25 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_24500 9c5e8470e10b5cf5d0418bcc2f970625 116 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 71 86 2.0E-12 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMK58_24500 9c5e8470e10b5cf5d0418bcc2f970625 116 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 43 54 2.0E-12 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMK58_24500 9c5e8470e10b5cf5d0418bcc2f970625 116 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 24 39 2.0E-12 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMK58_24500 9c5e8470e10b5cf5d0418bcc2f970625 116 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 56 71 2.0E-12 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMK58_24500 9c5e8470e10b5cf5d0418bcc2f970625 116 SMART SM00418 22 100 5.7E-26 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMK58_24500 9c5e8470e10b5cf5d0418bcc2f970625 116 Pfam PF01022 Bacterial regulatory protein, arsR family 32 74 3.4E-17 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMK58_24500 9c5e8470e10b5cf5d0418bcc2f970625 116 Gene3D G3DSA:1.10.10.10 7 106 7.8E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_24000 5e4efcdeb687af4d1afdabfd5f62a388 285 SUPERFAMILY SSF109709 121 228 1.22E-20 T 11-10-2018 AMK58_24000 5e4efcdeb687af4d1afdabfd5f62a388 285 Pfam PF02195 ParB-like nuclease domain 41 127 4.1E-22 T 11-10-2018 IPR003115 ParB/Sulfiredoxin AMK58_24000 5e4efcdeb687af4d1afdabfd5f62a388 285 SUPERFAMILY SSF110849 33 132 3.84E-23 T 11-10-2018 IPR036086 ParB/Sulfiredoxin superfamily AMK58_24000 5e4efcdeb687af4d1afdabfd5f62a388 285 Gene3D G3DSA:3.90.1530.30 53 115 6.1E-17 T 11-10-2018 AMK58_24000 5e4efcdeb687af4d1afdabfd5f62a388 285 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 38 200 1.5E-37 T 11-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 AMK58_24000 5e4efcdeb687af4d1afdabfd5f62a388 285 SMART SM00470 40 128 7.9E-25 T 11-10-2018 IPR003115 ParB/Sulfiredoxin AMK58_24000 5e4efcdeb687af4d1afdabfd5f62a388 285 Gene3D G3DSA:1.10.10.2830 116 229 6.7E-22 T 11-10-2018 AMK58_03605 49109f9c984bd402eb2aeb0cf939aeb5 430 Hamap MF_01232 UPF0229 protein YeaH [yeaH]. 1 428 37.568 T 11-10-2018 IPR006698 Uncharacterised protein family UPF0229 AMK58_03605 49109f9c984bd402eb2aeb0cf939aeb5 430 Pfam PF04285 Protein of unknown function (DUF444) 3 426 1.4E-170 T 11-10-2018 IPR006698 Uncharacterised protein family UPF0229 AMK58_27660 d435c7d6dcc48a2ccdd66f5737d822c0 321 Gene3D G3DSA:3.40.190.10 123 247 2.1E-73 T 11-10-2018 AMK58_27660 d435c7d6dcc48a2ccdd66f5737d822c0 321 Gene3D G3DSA:3.40.190.150 31 310 2.1E-73 T 11-10-2018 AMK58_27660 d435c7d6dcc48a2ccdd66f5737d822c0 321 PIRSF PIRSF017082 3 321 1.4E-97 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 AMK58_27660 d435c7d6dcc48a2ccdd66f5737d822c0 321 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 47 314 1.9E-30 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 AMK58_27660 d435c7d6dcc48a2ccdd66f5737d822c0 321 SUPERFAMILY SSF53850 34 276 1.19E-11 T 11-10-2018 AMK58_21380 cbe197601fc8b17539f7fd5f986866d1 265 Gene3D G3DSA:3.40.1010.10 8 124 3.9E-43 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 AMK58_21380 cbe197601fc8b17539f7fd5f986866d1 265 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 10 221 3.1E-48 T 11-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 AMK58_21380 cbe197601fc8b17539f7fd5f986866d1 265 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 10 240 4.9E-79 T 11-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMK58_21380 cbe197601fc8b17539f7fd5f986866d1 265 Gene3D G3DSA:3.30.950.10 125 252 1.7E-33 T 11-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 AMK58_21380 cbe197601fc8b17539f7fd5f986866d1 265 SUPERFAMILY SSF53790 7 245 9.16E-70 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 AMK58_25565 370d44dcaf65d07fa1c98124a1d4d731 1169 Gene3D G3DSA:1.20.120.850 933 1156 3.2E-77 T 11-10-2018 AMK58_25565 370d44dcaf65d07fa1c98124a1d4d731 1169 SUPERFAMILY SSF52540 912 1164 1.33E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_25565 370d44dcaf65d07fa1c98124a1d4d731 1169 SUPERFAMILY SSF52540 669 911 7.98E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_25565 370d44dcaf65d07fa1c98124a1d4d731 1169 SMART SM00487 696 884 8.9E-29 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMK58_25565 370d44dcaf65d07fa1c98124a1d4d731 1169 SMART SM00490 1030 1110 2.0E-20 T 11-10-2018 IPR001650 Helicase, C-terminal AMK58_25565 370d44dcaf65d07fa1c98124a1d4d731 1169 Gene3D G3DSA:3.40.50.300 918 1124 3.2E-77 T 11-10-2018 AMK58_25565 370d44dcaf65d07fa1c98124a1d4d731 1169 Gene3D G3DSA:3.40.50.10810 701 912 2.8E-64 T 11-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily AMK58_25565 370d44dcaf65d07fa1c98124a1d4d731 1169 Pfam PF00176 SNF2 family N-terminal domain 717 984 2.6E-57 T 11-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 AMK58_25565 370d44dcaf65d07fa1c98124a1d4d731 1169 Pfam PF00271 Helicase conserved C-terminal domain 1001 1110 9.5E-17 T 11-10-2018 IPR001650 Helicase, C-terminal AMK58_04005 ed28f1dc056a34af07fe1d14e73059aa 467 SUPERFAMILY SSF56176 12 225 1.82E-70 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMK58_04005 ed28f1dc056a34af07fe1d14e73059aa 467 Gene3D G3DSA:3.30.70.2740 344 425 7.5E-12 T 11-10-2018 AMK58_04005 ed28f1dc056a34af07fe1d14e73059aa 467 SUPERFAMILY SSF55103 228 465 3.43E-71 T 11-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 AMK58_04005 ed28f1dc056a34af07fe1d14e73059aa 467 Gene3D G3DSA:1.10.45.10 426 465 9.5E-7 T 11-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 AMK58_04005 ed28f1dc056a34af07fe1d14e73059aa 467 Gene3D G3DSA:3.30.465.40 15 241 1.5E-73 T 11-10-2018 AMK58_04005 ed28f1dc056a34af07fe1d14e73059aa 467 Pfam PF01565 FAD binding domain 51 187 1.6E-39 T 11-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMK58_04005 ed28f1dc056a34af07fe1d14e73059aa 467 Pfam PF02913 FAD linked oxidases, C-terminal domain 224 464 3.6E-64 T 11-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 AMK58_09675 072099cde348080a78ff2330f19ac0b5 190 TIGRFAM TIGR01926 peroxid_rel: uncharacterized peroxidase-related enzyme 9 183 1.3E-65 T 11-10-2018 IPR010195 Uncharacterised peroxidase-related AMK58_09675 072099cde348080a78ff2330f19ac0b5 190 Gene3D G3DSA:1.20.5.810 17 66 2.1E-24 T 11-10-2018 AMK58_09675 072099cde348080a78ff2330f19ac0b5 190 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 65 113 5.9E-14 T 11-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMK58_09675 072099cde348080a78ff2330f19ac0b5 190 Pfam PF02627 Carboxymuconolactone decarboxylase family 50 104 8.5E-10 T 11-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMK58_09675 072099cde348080a78ff2330f19ac0b5 190 Gene3D G3DSA:1.20.1290.10 67 190 2.4E-43 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMK58_09675 072099cde348080a78ff2330f19ac0b5 190 SUPERFAMILY SSF69118 3 187 1.09E-56 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMK58_26940 66b2a94af7dc225ed2a9a47c4197b353 351 Pfam PF00491 Arginase family 69 337 4.1E-84 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 AMK58_26940 66b2a94af7dc225ed2a9a47c4197b353 351 Gene3D G3DSA:3.40.800.10 33 350 1.3E-102 T 11-10-2018 AMK58_26940 66b2a94af7dc225ed2a9a47c4197b353 351 PIRSF PIRSF036979 50 344 5.7E-92 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 AMK58_26940 66b2a94af7dc225ed2a9a47c4197b353 351 SUPERFAMILY SSF52768 35 341 1.3E-86 T 11-10-2018 IPR023696 Ureohydrolase domain superfamily AMK58_26940 66b2a94af7dc225ed2a9a47c4197b353 351 TIGRFAM TIGR01230 agmatinase: agmatinase 69 337 4.8E-55 T 11-10-2018 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|Reactome: R-HSA-351143 AMK58_26940 66b2a94af7dc225ed2a9a47c4197b353 351 ProSitePatterns PS01053 Arginase family signature. 268 289 - T 11-10-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 AMK58_09025 874e88ce14d6b3b8463a88acf1ea40a3 227 Gene3D G3DSA:3.60.21.10 25 165 5.6E-9 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like AMK58_09025 874e88ce14d6b3b8463a88acf1ea40a3 227 Pfam PF00149 Calcineurin-like phosphoesterase 26 122 5.3E-5 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AMK58_09025 874e88ce14d6b3b8463a88acf1ea40a3 227 TIGRFAM TIGR04123 P_estr_lig_assc: metallophosphoesterase, DNA ligase-associated 6 214 6.0E-68 T 11-10-2018 IPR026336 Metallophosphoesterase, DNA ligase-associated AMK58_09025 874e88ce14d6b3b8463a88acf1ea40a3 227 SUPERFAMILY SSF56300 26 129 1.77E-12 T 11-10-2018 AMK58_09025 874e88ce14d6b3b8463a88acf1ea40a3 227 PIRSF PIRSF000887 5 222 7.5E-49 T 11-10-2018 IPR024173 Phosphoesterase, MJ0037 AMK58_28285 81f2c1118aa125f921d509f30f78ea93 185 SUPERFAMILY SSF103088 49 183 4.45E-32 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMK58_28285 81f2c1118aa125f921d509f30f78ea93 185 Gene3D G3DSA:3.30.1330.60 25 185 5.5E-42 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMK58_28285 81f2c1118aa125f921d509f30f78ea93 185 Pfam PF00691 OmpA family 74 177 2.5E-19 T 11-10-2018 IPR006665 OmpA-like domain AMK58_19800 42a6a13f0db645716f53004e81caa0cf 337 Pfam PF09898 Uncharacterized protein conserved in bacteria (DUF2125) 25 333 3.2E-66 T 11-10-2018 IPR018666 Protein of unknown function DUF2125 AMK58_04065 46f645c7a4b8aaa3bef9b59dd6a10ff7 292 Gene3D G3DSA:3.90.226.10 24 229 2.8E-51 T 11-10-2018 AMK58_04065 46f645c7a4b8aaa3bef9b59dd6a10ff7 292 SUPERFAMILY SSF52096 20 226 6.47E-33 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMK58_04065 46f645c7a4b8aaa3bef9b59dd6a10ff7 292 Pfam PF01343 Peptidase family S49 89 230 4.0E-25 T 11-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 AMK58_04065 46f645c7a4b8aaa3bef9b59dd6a10ff7 292 Gene3D G3DSA:3.40.1750.20 128 194 2.8E-51 T 11-10-2018 AMK58_24185 8799a8f3db4f21e9c312e9dd3535ef55 450 Gene3D G3DSA:2.40.420.20 330 423 1.9E-20 T 11-10-2018 AMK58_24185 8799a8f3db4f21e9c312e9dd3535ef55 450 Gene3D G3DSA:2.40.30.170 111 329 4.1E-68 T 11-10-2018 AMK58_24185 8799a8f3db4f21e9c312e9dd3535ef55 450 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 93 422 1.8E-73 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMK58_24185 8799a8f3db4f21e9c312e9dd3535ef55 450 Pfam PF13437 HlyD family secretion protein 229 330 1.9E-5 T 11-10-2018 AMK58_24185 8799a8f3db4f21e9c312e9dd3535ef55 450 Pfam PF13533 Biotin-lipoyl like 118 165 4.0E-14 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain AMK58_24185 8799a8f3db4f21e9c312e9dd3535ef55 450 SUPERFAMILY SSF111369 110 344 1.83E-57 T 11-10-2018 AMK58_24185 8799a8f3db4f21e9c312e9dd3535ef55 450 Gene3D G3DSA:2.40.50.100 117 261 4.1E-68 T 11-10-2018 AMK58_24185 8799a8f3db4f21e9c312e9dd3535ef55 450 Gene3D G3DSA:1.10.287.470 152 225 4.1E-68 T 11-10-2018 AMK58_03265 970dc6d2c97dc328f3278d95bd7742c6 344 Gene3D G3DSA:2.40.10.10 124 212 2.6E-7 T 11-10-2018 AMK58_03265 970dc6d2c97dc328f3278d95bd7742c6 344 Pfam PF13365 Trypsin-like peptidase domain 147 302 1.6E-17 T 11-10-2018 AMK58_03265 970dc6d2c97dc328f3278d95bd7742c6 344 Gene3D G3DSA:2.40.10.10 216 336 8.5E-19 T 11-10-2018 AMK58_03265 970dc6d2c97dc328f3278d95bd7742c6 344 SUPERFAMILY SSF50494 128 331 1.01E-28 T 11-10-2018 IPR009003 Peptidase S1, PA clan AMK58_28215 e0a804e26bc64b6c934299cd7eff7487 595 Gene3D G3DSA:3.30.1360.60 400 480 5.4E-25 T 11-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 AMK58_28215 e0a804e26bc64b6c934299cd7eff7487 595 SUPERFAMILY SSF55604 404 477 1.01E-17 T 11-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 AMK58_28215 e0a804e26bc64b6c934299cd7eff7487 595 Gene3D G3DSA:3.30.1360.60 516 586 1.3E-11 T 11-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 AMK58_28215 e0a804e26bc64b6c934299cd7eff7487 595 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 417 434 - T 11-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AMK58_28215 e0a804e26bc64b6c934299cd7eff7487 595 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 381 463 4.8E-18 T 11-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AMK58_28215 e0a804e26bc64b6c934299cd7eff7487 595 TIGRFAM TIGR02002 PTS-II-BC-glcB: PTS system, glucose-specific IIBC component 6 478 1.3E-199 T 11-10-2018 IPR011299 PTS system glucose-specific IIBC component GO:0005355|GO:0016021|GO:1904659 AMK58_28215 e0a804e26bc64b6c934299cd7eff7487 595 Pfam PF02378 Phosphotransferase system, EIIC 13 318 1.6E-82 T 11-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AMK58_28215 e0a804e26bc64b6c934299cd7eff7487 595 SUPERFAMILY SSF55604 518 584 1.1E-9 T 11-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 AMK58_28215 e0a804e26bc64b6c934299cd7eff7487 595 Pfam PF00367 phosphotransferase system, EIIB 407 439 1.2E-8 T 11-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AMK58_28215 e0a804e26bc64b6c934299cd7eff7487 595 Pfam PF00367 phosphotransferase system, EIIB 520 550 4.3E-7 T 11-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AMK58_26080 6ae93aa48c5c0b818a8556e47ed69e76 871 Pfam PF02779 Transketolase, pyrimidine binding domain 515 708 1.8E-61 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMK58_26080 6ae93aa48c5c0b818a8556e47ed69e76 871 SMART SM00861 516 709 1.4E-52 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMK58_26080 6ae93aa48c5c0b818a8556e47ed69e76 871 Gene3D G3DSA:3.40.50.12470 481 732 6.3E-146 T 11-10-2018 AMK58_26080 6ae93aa48c5c0b818a8556e47ed69e76 871 Gene3D G3DSA:3.40.50.11610 652 853 6.3E-146 T 11-10-2018 AMK58_26080 6ae93aa48c5c0b818a8556e47ed69e76 871 PIRSF PIRSF000157 70 857 1.4E-288 T 11-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AMK58_26080 6ae93aa48c5c0b818a8556e47ed69e76 871 PIRSF PIRSF000157 1 81 3.4 T 11-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AMK58_26080 6ae93aa48c5c0b818a8556e47ed69e76 871 Gene3D G3DSA:3.40.50.970 91 456 4.2E-117 T 11-10-2018 AMK58_26080 6ae93aa48c5c0b818a8556e47ed69e76 871 SUPERFAMILY SSF52518 511 715 2.86E-47 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMK58_26080 6ae93aa48c5c0b818a8556e47ed69e76 871 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 714 855 2.1E-33 T 11-10-2018 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AMK58_26080 6ae93aa48c5c0b818a8556e47ed69e76 871 Pfam PF00676 Dehydrogenase E1 component 135 451 7.9E-43 T 11-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 AMK58_26080 6ae93aa48c5c0b818a8556e47ed69e76 871 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 66 854 2.3E-243 T 11-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AMK58_26080 6ae93aa48c5c0b818a8556e47ed69e76 871 SUPERFAMILY SSF52518 87 450 1.18E-61 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMK58_09665 a9368c142460e4a6a2df838d4533be08 189 Gene3D G3DSA:2.60.40.1880 39 188 2.1E-6 T 11-10-2018 IPR038696 Invasion protein B superfamily AMK58_05555 a1639efcd8365e62f0ed1dcf6dd1e9c2 565 SUPERFAMILY SSF58104 242 558 3.53E-55 T 11-10-2018 AMK58_05555 a1639efcd8365e62f0ed1dcf6dd1e9c2 565 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 371 525 5.7E-26 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_05555 a1639efcd8365e62f0ed1dcf6dd1e9c2 565 SMART SM00283 305 559 2.1E-32 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_05555 a1639efcd8365e62f0ed1dcf6dd1e9c2 565 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 403 430 3.3E-18 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_05555 a1639efcd8365e62f0ed1dcf6dd1e9c2 565 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 432 461 3.3E-18 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_05555 a1639efcd8365e62f0ed1dcf6dd1e9c2 565 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 6 31 3.3E-18 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_05555 a1639efcd8365e62f0ed1dcf6dd1e9c2 565 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 480 509 3.3E-18 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_05555 a1639efcd8365e62f0ed1dcf6dd1e9c2 565 Gene3D G3DSA:1.10.287.950 273 564 1.0E-48 T 11-10-2018 AMK58_05555 a1639efcd8365e62f0ed1dcf6dd1e9c2 565 Pfam PF12729 Four helix bundle sensory module for signal transduction 5 165 8.5E-7 T 11-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain AMK58_05555 a1639efcd8365e62f0ed1dcf6dd1e9c2 565 Gene3D G3DSA:1.20.1480.50 176 272 2.4E-11 T 11-10-2018 AMK58_23635 2c01880dbbb65df4b54d9b7bef5845f2 520 Gene3D G3DSA:2.40.50.180 388 457 2.2E-26 T 11-10-2018 AMK58_23635 2c01880dbbb65df4b54d9b7bef5845f2 520 Gene3D G3DSA:2.40.50.180 215 286 6.8E-25 T 11-10-2018 AMK58_23635 2c01880dbbb65df4b54d9b7bef5845f2 520 Gene3D G3DSA:2.40.50.180 31 108 3.0E-19 T 11-10-2018 AMK58_23635 2c01880dbbb65df4b54d9b7bef5845f2 520 SUPERFAMILY SSF50341 192 338 7.98E-27 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 AMK58_23635 2c01880dbbb65df4b54d9b7bef5845f2 520 Gene3D G3DSA:2.30.30.40 371 492 2.2E-26 T 11-10-2018 AMK58_23635 2c01880dbbb65df4b54d9b7bef5845f2 520 SMART SM00260 365 508 4.3E-25 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMK58_23635 2c01880dbbb65df4b54d9b7bef5845f2 520 SMART SM00260 192 337 2.0E-25 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMK58_23635 2c01880dbbb65df4b54d9b7bef5845f2 520 SMART SM00260 8 161 5.3E-20 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMK58_23635 2c01880dbbb65df4b54d9b7bef5845f2 520 SUPERFAMILY SSF50341 370 510 2.88E-28 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 AMK58_23635 2c01880dbbb65df4b54d9b7bef5845f2 520 Gene3D G3DSA:2.30.30.40 14 141 3.0E-19 T 11-10-2018 AMK58_23635 2c01880dbbb65df4b54d9b7bef5845f2 520 SUPERFAMILY SSF50341 10 162 1.05E-22 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 AMK58_23635 2c01880dbbb65df4b54d9b7bef5845f2 520 Pfam PF01584 CheW-like domain 196 339 1.4E-26 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMK58_23635 2c01880dbbb65df4b54d9b7bef5845f2 520 Pfam PF01584 CheW-like domain 370 510 2.0E-28 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMK58_23635 2c01880dbbb65df4b54d9b7bef5845f2 520 Pfam PF01584 CheW-like domain 13 163 6.2E-24 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMK58_23635 2c01880dbbb65df4b54d9b7bef5845f2 520 Gene3D G3DSA:2.30.30.40 198 324 6.8E-25 T 11-10-2018 AMK58_01985 3d47b6e535e4a25e8cd39cc7c1830eec 89 Pfam PF11154 Protein of unknown function (DUF2934) 8 42 1.6E-13 T 11-10-2018 IPR021327 Protein of unknown function DUF2934 AMK58_07795 65013b36d596e24b8923b3b4733d779a 271 Pfam PF12706 Beta-lactamase superfamily domain 62 243 3.0E-34 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMK58_07795 65013b36d596e24b8923b3b4733d779a 271 SUPERFAMILY SSF56281 5 271 6.16E-42 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMK58_07795 65013b36d596e24b8923b3b4733d779a 271 SMART SM00849 47 242 0.0044 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMK58_07795 65013b36d596e24b8923b3b4733d779a 271 Gene3D G3DSA:3.60.15.10 3 271 8.8E-65 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMK58_17350 436eb19afa0d3f75d11c37edb562375d 287 Gene3D G3DSA:3.30.2040.10 131 243 5.2E-93 T 11-10-2018 AMK58_17350 436eb19afa0d3f75d11c37edb562375d 287 Pfam PF07286 Protein of unknown function (DUF1445) 121 263 4.9E-64 T 11-10-2018 IPR009906 D-glutamate cyclase AMK58_17350 436eb19afa0d3f75d11c37edb562375d 287 SUPERFAMILY SSF160920 20 263 1.09E-107 T 11-10-2018 IPR038021 Putative hydro-lyase AMK58_17350 436eb19afa0d3f75d11c37edb562375d 287 Hamap MF_01830 Putative hydro-lyase . 14 271 51.374 T 11-10-2018 IPR016938 Uncharacterised protein family UPF0317 AMK58_17350 436eb19afa0d3f75d11c37edb562375d 287 Gene3D G3DSA:3.40.1640.10 30 259 5.2E-93 T 11-10-2018 AMK58_17350 436eb19afa0d3f75d11c37edb562375d 287 PIRSF PIRSF029755 12 272 2.8E-113 T 11-10-2018 IPR016938 Uncharacterised protein family UPF0317 AMK58_05525 386521c4ff77a6654530d45096b07991 234 Pfam PF01895 PhoU domain 128 210 1.3E-18 T 11-10-2018 IPR026022 PhoU domain AMK58_05525 386521c4ff77a6654530d45096b07991 234 Pfam PF01895 PhoU domain 24 110 2.4E-21 T 11-10-2018 IPR026022 PhoU domain AMK58_05525 386521c4ff77a6654530d45096b07991 234 PIRSF PIRSF003107 6 224 7.2E-57 T 11-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 AMK58_05525 386521c4ff77a6654530d45096b07991 234 Gene3D G3DSA:1.20.58.220 120 228 1.9E-28 T 11-10-2018 IPR038078 PhoU-like domain superfamily AMK58_05525 386521c4ff77a6654530d45096b07991 234 SUPERFAMILY SSF109755 11 222 4.4E-60 T 11-10-2018 AMK58_05525 386521c4ff77a6654530d45096b07991 234 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 11 218 1.2E-57 T 11-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 AMK58_05525 386521c4ff77a6654530d45096b07991 234 Gene3D G3DSA:1.20.58.220 2 119 4.7E-36 T 11-10-2018 IPR038078 PhoU-like domain superfamily AMK58_18885 5c19921d1882b2108e28d1a1d31aec4e 217 Gene3D G3DSA:2.60.120.10 106 199 4.1E-24 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_18885 5c19921d1882b2108e28d1a1d31aec4e 217 TIGRFAM TIGR02451 anti_sig_ChrR: anti-sigma factor, putative, ChrR family 6 213 2.3E-47 T 11-10-2018 IPR012807 Anti-sigma factor ChrR, putative AMK58_18885 5c19921d1882b2108e28d1a1d31aec4e 217 Gene3D G3DSA:1.10.10.1320 3 103 7.7E-30 T 11-10-2018 AMK58_18885 5c19921d1882b2108e28d1a1d31aec4e 217 SUPERFAMILY SSF51182 104 206 2.03E-18 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily AMK58_18885 5c19921d1882b2108e28d1a1d31aec4e 217 Pfam PF12973 ChrR Cupin-like domain 129 194 5.2E-12 T 11-10-2018 IPR025979 ChrR-like cupin domain AMK58_11705 6448bf3c8282694ac640ac62fc31dd81 152 Gene3D G3DSA:3.40.1280.10 1 151 8.4E-50 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMK58_11705 6448bf3c8282694ac640ac62fc31dd81 152 Pfam PF02590 Predicted SPOUT methyltransferase 1 150 4.1E-47 T 11-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 AMK58_11705 6448bf3c8282694ac640ac62fc31dd81 152 PIRSF PIRSF004505 1 151 3.3E-44 T 11-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 AMK58_11705 6448bf3c8282694ac640ac62fc31dd81 152 SUPERFAMILY SSF75217 1 149 4.19E-47 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases AMK58_11705 6448bf3c8282694ac640ac62fc31dd81 152 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 151 28.102 T 11-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 AMK58_28605 c39e916e7e479eb50c9fcb11d9a4f5dc 791 Gene3D G3DSA:1.10.287.950 387 675 2.3E-47 T 11-10-2018 AMK58_28605 c39e916e7e479eb50c9fcb11d9a4f5dc 791 Pfam PF07238 PilZ domain 690 780 9.0E-6 T 11-10-2018 IPR009875 PilZ domain GO:0035438 AMK58_28605 c39e916e7e479eb50c9fcb11d9a4f5dc 791 Pfam PF00672 HAMP domain 340 383 1.1E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_28605 c39e916e7e479eb50c9fcb11d9a4f5dc 791 SMART SM00283 428 682 1.6E-39 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_28605 c39e916e7e479eb50c9fcb11d9a4f5dc 791 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 499 652 4.7E-30 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_28605 c39e916e7e479eb50c9fcb11d9a4f5dc 791 SUPERFAMILY SSF58104 366 677 9.42E-56 T 11-10-2018 AMK58_28605 c39e916e7e479eb50c9fcb11d9a4f5dc 791 SUPERFAMILY SSF141371 686 742 7.06E-5 T 11-10-2018 AMK58_28605 c39e916e7e479eb50c9fcb11d9a4f5dc 791 Gene3D G3DSA:1.10.8.500 339 386 5.9E-13 T 11-10-2018 AMK58_28605 c39e916e7e479eb50c9fcb11d9a4f5dc 791 SMART SM00304 338 391 2.3E-5 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_18870 202554c06c49b95d5c2f8cb0d51f5235 221 Gene3D G3DSA:3.90.930.1 3 134 1.5E-8 T 11-10-2018 AMK58_18870 202554c06c49b95d5c2f8cb0d51f5235 221 SUPERFAMILY SSF82185 95 212 7.85E-21 T 11-10-2018 AMK58_18870 202554c06c49b95d5c2f8cb0d51f5235 221 Gene3D G3DSA:2.20.110.10 144 216 3.0E-8 T 11-10-2018 AMK58_18870 202554c06c49b95d5c2f8cb0d51f5235 221 SUPERFAMILY SSF82185 16 87 1.14E-9 T 11-10-2018 AMK58_06580 b7bff12e11e8e8252869f0712168a4ac 393 SUPERFAMILY SSF53383 13 389 2.24E-84 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_06580 b7bff12e11e8e8252869f0712168a4ac 393 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 239 252 - T 11-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 AMK58_06580 b7bff12e11e8e8252869f0712168a4ac 393 Pfam PF00155 Aminotransferase class I and II 36 388 2.2E-42 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMK58_06580 b7bff12e11e8e8252869f0712168a4ac 393 Gene3D G3DSA:3.40.640.10 20 392 8.2E-82 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_15415 8776bb4ef7406cd3db259b7283cddb67 166 Gene3D G3DSA:1.10.443.10 7 142 2.9E-10 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMK58_15415 8776bb4ef7406cd3db259b7283cddb67 166 SUPERFAMILY SSF56349 31 136 8.24E-14 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMK58_15415 8776bb4ef7406cd3db259b7283cddb67 166 Pfam PF00589 Phage integrase family 75 131 8.2E-7 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMK58_11760 27826dc1fa21ed1aca95feb6909f2a0e 189 Gene3D G3DSA:1.10.520.20 11 104 4.5E-19 T 11-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_11760 27826dc1fa21ed1aca95feb6909f2a0e 189 PRINTS PR00125 ATP synthase delta subunit signature 157 175 3.0E-23 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_11760 27826dc1fa21ed1aca95feb6909f2a0e 189 PRINTS PR00125 ATP synthase delta subunit signature 81 92 3.0E-23 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_11760 27826dc1fa21ed1aca95feb6909f2a0e 189 PRINTS PR00125 ATP synthase delta subunit signature 142 157 3.0E-23 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_11760 27826dc1fa21ed1aca95feb6909f2a0e 189 PRINTS PR00125 ATP synthase delta subunit signature 92 106 3.0E-23 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_11760 27826dc1fa21ed1aca95feb6909f2a0e 189 PRINTS PR00125 ATP synthase delta subunit signature 11 30 3.0E-23 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_11760 27826dc1fa21ed1aca95feb6909f2a0e 189 Pfam PF00213 ATP synthase delta (OSCP) subunit 11 181 8.7E-47 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_11760 27826dc1fa21ed1aca95feb6909f2a0e 189 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 12 179 8.6E-39 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_11760 27826dc1fa21ed1aca95feb6909f2a0e 189 Hamap MF_01416 ATP synthase subunit delta [atpD]. 7 184 19.335 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_11760 27826dc1fa21ed1aca95feb6909f2a0e 189 ProSitePatterns PS00389 ATP synthase delta (OSCP) subunit signature. 144 163 - T 11-10-2018 IPR020781 ATPase, OSCP/delta subunit, conserved site GO:0015986|GO:0016020|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_11760 27826dc1fa21ed1aca95feb6909f2a0e 189 SUPERFAMILY SSF47928 10 112 6.28E-21 T 11-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_24445 8f6f17402aba13cb06239279aee0f04b 453 PRINTS PR00095 Anthranilate synthase component I signature 288 301 3.2E-16 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMK58_24445 8f6f17402aba13cb06239279aee0f04b 453 PRINTS PR00095 Anthranilate synthase component I signature 397 411 3.2E-16 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMK58_24445 8f6f17402aba13cb06239279aee0f04b 453 PRINTS PR00095 Anthranilate synthase component I signature 302 315 3.2E-16 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMK58_24445 8f6f17402aba13cb06239279aee0f04b 453 PRINTS PR00095 Anthranilate synthase component I signature 382 396 3.2E-16 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMK58_24445 8f6f17402aba13cb06239279aee0f04b 453 Pfam PF00425 chorismate binding enzyme 183 440 4.3E-92 T 11-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal AMK58_24445 8f6f17402aba13cb06239279aee0f04b 453 SUPERFAMILY SSF56322 5 449 5.63E-138 T 11-10-2018 IPR005801 ADC synthase GO:0009058 AMK58_24445 8f6f17402aba13cb06239279aee0f04b 453 Gene3D G3DSA:3.60.120.10 2 452 1.9E-155 T 11-10-2018 IPR005801 ADC synthase GO:0009058 AMK58_24445 8f6f17402aba13cb06239279aee0f04b 453 TIGRFAM TIGR00553 pabB: aminodeoxychorismate synthase, component I 96 442 4.9E-107 T 11-10-2018 IPR005802 Para-aminobenzoate synthase, component I GO:0009396 KEGG: 00790+2.6.1.85|MetaCyc: PWY-6543 AMK58_24445 8f6f17402aba13cb06239279aee0f04b 453 Pfam PF04715 Anthranilate synthase component I, N terminal region 10 142 2.6E-26 T 11-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMK58_10305 053d60105674da1927c92c43de05dcfd 120 Gene3D G3DSA:3.30.420.100 3 120 2.1E-47 T 11-10-2018 AMK58_10305 053d60105674da1927c92c43de05dcfd 120 SUPERFAMILY SSF53137 5 118 9.16E-55 T 11-10-2018 AMK58_10305 053d60105674da1927c92c43de05dcfd 120 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 5 120 2.7E-41 T 11-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_10305 053d60105674da1927c92c43de05dcfd 120 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 3 120 29.22 T 11-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_10305 053d60105674da1927c92c43de05dcfd 120 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 5 120 7.2E-44 T 11-10-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_07040 b336b08f8869b426f482a55f5a9cc7fd 233 SUPERFAMILY SSF46894 160 229 1.12E-21 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMK58_07040 b336b08f8869b426f482a55f5a9cc7fd 233 SUPERFAMILY SSF52172 20 142 5.83E-20 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_07040 b336b08f8869b426f482a55f5a9cc7fd 233 ProSitePatterns PS00622 LuxR-type HTH domain signature. 183 210 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_07040 b336b08f8869b426f482a55f5a9cc7fd 233 Pfam PF00072 Response regulator receiver domain 22 133 2.3E-12 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_07040 b336b08f8869b426f482a55f5a9cc7fd 233 SMART SM00421 166 223 2.7E-24 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_07040 b336b08f8869b426f482a55f5a9cc7fd 233 SMART SM00448 19 133 3.3E-15 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_07040 b336b08f8869b426f482a55f5a9cc7fd 233 Pfam PF00196 Bacterial regulatory proteins, luxR family 168 223 3.2E-20 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_07040 b336b08f8869b426f482a55f5a9cc7fd 233 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 169 183 8.1E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_07040 b336b08f8869b426f482a55f5a9cc7fd 233 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 183 199 8.1E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_07040 b336b08f8869b426f482a55f5a9cc7fd 233 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 199 211 8.1E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_07040 b336b08f8869b426f482a55f5a9cc7fd 233 Gene3D G3DSA:3.40.50.12740 20 228 4.3E-44 T 11-10-2018 AMK58_12705 9c091e0bd2d4987cc70dcd285641c12e 137 Pfam PF09912 Uncharacterized protein conserved in bacteria (DUF2141) 22 128 9.0E-28 T 11-10-2018 IPR018673 Protein of unknown function DUF2141 AMK58_27060 57720a29c2c67fec14bb8a718f5c0917 935 Gene3D G3DSA:1.20.1440.90 297 423 3.9E-11 T 11-10-2018 AMK58_27060 57720a29c2c67fec14bb8a718f5c0917 935 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 588 600 - T 11-10-2018 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AMK58_27060 57720a29c2c67fec14bb8a718f5c0917 935 ProSitePatterns PS00781 Phosphoenolpyruvate carboxylase active site 1. 158 169 - T 11-10-2018 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AMK58_27060 57720a29c2c67fec14bb8a718f5c0917 935 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 20 935 19.769 T 11-10-2018 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AMK58_27060 57720a29c2c67fec14bb8a718f5c0917 935 SUPERFAMILY SSF51621 28 935 0.0 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMK58_27060 57720a29c2c67fec14bb8a718f5c0917 935 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 269 284 2.8E-55 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AMK58_27060 57720a29c2c67fec14bb8a718f5c0917 935 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 763 789 2.8E-55 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AMK58_27060 57720a29c2c67fec14bb8a718f5c0917 935 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 420 440 2.8E-55 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AMK58_27060 57720a29c2c67fec14bb8a718f5c0917 935 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 586 606 2.8E-55 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AMK58_27060 57720a29c2c67fec14bb8a718f5c0917 935 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 628 657 2.8E-55 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AMK58_27060 57720a29c2c67fec14bb8a718f5c0917 935 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 157 170 2.8E-55 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AMK58_27060 57720a29c2c67fec14bb8a718f5c0917 935 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 210 226 2.8E-55 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AMK58_27060 57720a29c2c67fec14bb8a718f5c0917 935 Pfam PF00311 Phosphoenolpyruvate carboxylase 154 935 8.0E-296 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AMK58_10555 875fbe8dbc7518636b20414faacf53fd 299 ProSitePatterns PS01125 ROK family signature. 130 157 - T 11-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 AMK58_10555 875fbe8dbc7518636b20414faacf53fd 299 Pfam PF00480 ROK family 3 298 2.1E-68 T 11-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 AMK58_10555 875fbe8dbc7518636b20414faacf53fd 299 SUPERFAMILY SSF53067 2 296 5.5E-61 T 11-10-2018 AMK58_10555 875fbe8dbc7518636b20414faacf53fd 299 Gene3D G3DSA:3.30.420.40 4 293 1.8E-81 T 11-10-2018 AMK58_10555 875fbe8dbc7518636b20414faacf53fd 299 Gene3D G3DSA:3.30.420.40 119 286 1.8E-81 T 11-10-2018 AMK58_14220 09a2a45754597f29b7ae1e9635771ded 282 Pfam PF07859 alpha/beta hydrolase fold 69 181 3.8E-13 T 11-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 AMK58_14220 09a2a45754597f29b7ae1e9635771ded 282 Gene3D G3DSA:3.40.50.1820 2 278 1.1E-56 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_14220 09a2a45754597f29b7ae1e9635771ded 282 SUPERFAMILY SSF53474 9 271 1.61E-43 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_21535 a669ec1e2695e7315068af8b7985dd4e 299 Gene3D G3DSA:3.90.1670.10 35 299 6.7E-80 T 11-10-2018 IPR024064 FdhE-like superfamily AMK58_21535 a669ec1e2695e7315068af8b7985dd4e 299 SUPERFAMILY SSF144020 42 296 7.72E-71 T 11-10-2018 IPR024064 FdhE-like superfamily AMK58_21535 a669ec1e2695e7315068af8b7985dd4e 299 Pfam PF04216 Protein involved in formate dehydrogenase formation 34 83 5.8E-11 T 11-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 AMK58_21535 a669ec1e2695e7315068af8b7985dd4e 299 Pfam PF04216 Protein involved in formate dehydrogenase formation 87 295 1.6E-66 T 11-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 AMK58_21535 a669ec1e2695e7315068af8b7985dd4e 299 TIGRFAM TIGR01562 FdhE: formate dehydrogenase accessory protein FdhE 83 296 5.5E-57 T 11-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 AMK58_21535 a669ec1e2695e7315068af8b7985dd4e 299 PIRSF PIRSF018296 83 299 3.5E-62 T 11-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 AMK58_21535 a669ec1e2695e7315068af8b7985dd4e 299 PIRSF PIRSF018296 15 94 9.9E-10 T 11-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 AMK58_17780 7f598a0f8093be44b3248e40afd886e7 377 Gene3D G3DSA:2.40.420.20 300 367 1.7E-73 T 11-10-2018 AMK58_17780 7f598a0f8093be44b3248e40afd886e7 377 Gene3D G3DSA:2.40.30.170 75 299 1.7E-73 T 11-10-2018 AMK58_17780 7f598a0f8093be44b3248e40afd886e7 377 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 64 369 5.1E-78 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMK58_17780 7f598a0f8093be44b3248e40afd886e7 377 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 74 289 5.7E-30 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMK58_17780 7f598a0f8093be44b3248e40afd886e7 377 SUPERFAMILY SSF111369 78 294 2.35E-41 T 11-10-2018 AMK58_17780 7f598a0f8093be44b3248e40afd886e7 377 Gene3D G3DSA:2.40.50.100 88 216 1.7E-73 T 11-10-2018 AMK58_17780 7f598a0f8093be44b3248e40afd886e7 377 Gene3D G3DSA:1.10.287.470 123 182 1.7E-73 T 11-10-2018 AMK58_15160 2d307713b68abb31acfc33994545bfb7 324 SUPERFAMILY SSF53850 134 286 6.21E-7 T 11-10-2018 AMK58_15160 2d307713b68abb31acfc33994545bfb7 324 PIRSF PIRSF006470 1 324 2.2E-69 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 AMK58_15160 2d307713b68abb31acfc33994545bfb7 324 Gene3D G3DSA:3.40.190.170 26 324 7.0E-91 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily AMK58_15160 2d307713b68abb31acfc33994545bfb7 324 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 31 285 1.4E-53 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 AMK58_15160 2d307713b68abb31acfc33994545bfb7 324 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 33 307 2.7E-68 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 AMK58_12070 edb017dd1d2c711a1dcc0fb6c5bd3bb8 259 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 258 6.7E-45 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMK58_12070 edb017dd1d2c711a1dcc0fb6c5bd3bb8 259 Gene3D G3DSA:3.90.226.10 1 203 1.5E-61 T 11-10-2018 AMK58_12070 edb017dd1d2c711a1dcc0fb6c5bd3bb8 259 SUPERFAMILY SSF52096 3 259 1.13E-69 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMK58_12070 edb017dd1d2c711a1dcc0fb6c5bd3bb8 259 Gene3D G3DSA:1.10.12.10 204 259 1.3E-28 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal AMK58_19485 d4ad2fe8cfda29475701e298ad9789e3 288 Pfam PF01618 MotA/TolQ/ExbB proton channel family 141 235 2.4E-15 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel AMK58_19485 d4ad2fe8cfda29475701e298ad9789e3 288 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 207 224 - T 11-10-2018 IPR000540 Flagellar motor protein MotA, conserved site AMK58_22315 9f749abdf59a71f9c31fb91eedbeb2de 173 SUPERFAMILY SSF54211 9 171 1.59E-69 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMK58_22315 9f749abdf59a71f9c31fb91eedbeb2de 173 Gene3D G3DSA:3.30.230.60 7 173 3.9E-76 T 11-10-2018 IPR037075 Formaldehyde-activating enzyme superfamily GO:0016051|GO:0016840 KEGG: 00030+4.1.2.43|KEGG: 00680+4.2.1.147+4.1.2.43|MetaCyc: PWY-1723|MetaCyc: PWY-1861|MetaCyc: PWY-7796 AMK58_22315 9f749abdf59a71f9c31fb91eedbeb2de 173 TIGRFAM TIGR03126 one_C_fae: formaldehyde-activating enzyme 13 171 5.6E-77 T 11-10-2018 IPR014826 Formaldehyde-activating enzyme GO:0016051|GO:0016840 KEGG: 00030+4.1.2.43|KEGG: 00680+4.2.1.147+4.1.2.43|MetaCyc: PWY-1723|MetaCyc: PWY-1861|MetaCyc: PWY-7796 AMK58_22315 9f749abdf59a71f9c31fb91eedbeb2de 173 Pfam PF08714 Formaldehyde-activating enzyme (Fae) 14 171 6.0E-73 T 11-10-2018 IPR014826 Formaldehyde-activating enzyme GO:0016051|GO:0016840 KEGG: 00030+4.1.2.43|KEGG: 00680+4.2.1.147+4.1.2.43|MetaCyc: PWY-1723|MetaCyc: PWY-1861|MetaCyc: PWY-7796 AMK58_02295 fe10a9fbf11a984f6797b1d25960c547 478 SUPERFAMILY SSF52540 76 362 8.71E-77 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_02295 fe10a9fbf11a984f6797b1d25960c547 478 Gene3D G3DSA:3.40.50.300 1 211 7.3E-74 T 11-10-2018 AMK58_02295 fe10a9fbf11a984f6797b1d25960c547 478 Gene3D G3DSA:3.40.50.300 214 378 7.5E-52 T 11-10-2018 AMK58_02295 fe10a9fbf11a984f6797b1d25960c547 478 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 154 162 - T 11-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site AMK58_02295 fe10a9fbf11a984f6797b1d25960c547 478 Pfam PF00270 DEAD/DEAH box helicase 26 195 5.0E-49 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMK58_02295 fe10a9fbf11a984f6797b1d25960c547 478 Pfam PF00271 Helicase conserved C-terminal domain 232 340 1.0E-28 T 11-10-2018 IPR001650 Helicase, C-terminal AMK58_02295 fe10a9fbf11a984f6797b1d25960c547 478 SMART SM00490 259 340 3.6E-35 T 11-10-2018 IPR001650 Helicase, C-terminal AMK58_02295 fe10a9fbf11a984f6797b1d25960c547 478 SMART SM00487 21 223 3.6E-59 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMK58_00505 06868d5cda410ca77888bda16cf87ca8 214 Pfam PF00117 Glutamine amidotransferase class-I 15 209 1.9E-21 T 11-10-2018 IPR017926 Glutamine amidotransferase AMK58_00505 06868d5cda410ca77888bda16cf87ca8 214 Gene3D G3DSA:3.40.50.880 1 213 4.0E-71 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_00505 06868d5cda410ca77888bda16cf87ca8 214 PIRSF PIRSF000495 2 214 9.5E-69 T 11-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 AMK58_00505 06868d5cda410ca77888bda16cf87ca8 214 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 3 212 35.999 T 11-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 AMK58_00505 06868d5cda410ca77888bda16cf87ca8 214 SUPERFAMILY SSF52317 3 203 2.52E-55 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_00505 06868d5cda410ca77888bda16cf87ca8 214 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 4 211 5.2E-67 T 11-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 AMK58_00685 54a6225f8e2a2f15bb5b1a2f27752002 138 Pfam PF05443 ROS/MUCR transcriptional regulator protein 10 130 2.2E-51 T 11-10-2018 IPR008807 ROSMUCR transcriptional regulator GO:0003677|GO:0006355|GO:0008270 AMK58_00685 54a6225f8e2a2f15bb5b1a2f27752002 138 Gene3D G3DSA:1.10.10.1550 57 113 2.3E-31 T 11-10-2018 AMK58_18345 d8d597c459b81de3ede1d522f5cd6281 183 SUPERFAMILY SSF55729 3 161 3.12E-24 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_18345 d8d597c459b81de3ede1d522f5cd6281 183 Pfam PF13302 Acetyltransferase (GNAT) domain 3 130 3.9E-9 T 11-10-2018 IPR000182 GNAT domain AMK58_18345 d8d597c459b81de3ede1d522f5cd6281 183 Gene3D G3DSA:3.40.630.30 1 168 7.0E-32 T 11-10-2018 AMK58_07365 4e24a06ca21adbc94de0644e668a41dc 188 Gene3D G3DSA:3.10.430.100 60 147 9.1E-25 T 11-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily AMK58_07365 4e24a06ca21adbc94de0644e668a41dc 188 SUPERFAMILY SSF55653 58 147 7.32E-25 T 11-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily AMK58_07365 4e24a06ca21adbc94de0644e668a41dc 188 SUPERFAMILY SSF55658 1 55 3.49E-18 T 11-10-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal AMK58_07365 4e24a06ca21adbc94de0644e668a41dc 188 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 147 24.533 T 11-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_07365 4e24a06ca21adbc94de0644e668a41dc 188 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 11-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_07365 4e24a06ca21adbc94de0644e668a41dc 188 Gene3D G3DSA:3.40.5.10 1 50 4.7E-23 T 11-10-2018 IPR036935 Ribosomal protein L9, N-terminal domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_07365 4e24a06ca21adbc94de0644e668a41dc 188 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 145 2.9E-25 T 11-10-2018 IPR020069 Ribosomal protein L9, C-terminal AMK58_07365 4e24a06ca21adbc94de0644e668a41dc 188 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 145 1.0E-37 T 11-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_07365 4e24a06ca21adbc94de0644e668a41dc 188 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 45 4.7E-22 T 11-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_24325 ce7609118f7ad88f079a41dce454d08f 209 Gene3D G3DSA:3.40.50.850 1 206 2.2E-58 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 AMK58_24325 ce7609118f7ad88f079a41dce454d08f 209 SUPERFAMILY SSF52499 7 203 6.8E-49 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 AMK58_24325 ce7609118f7ad88f079a41dce454d08f 209 Pfam PF00857 Isochorismatase family 23 194 1.6E-33 T 11-10-2018 IPR000868 Isochorismatase-like GO:0003824 AMK58_27080 31861ad8d67f81865114ee697385f9f1 200 Pfam PF01323 DSBA-like thioredoxin domain 5 193 4.5E-40 T 11-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 AMK58_27080 31861ad8d67f81865114ee697385f9f1 200 SUPERFAMILY SSF52833 5 196 2.38E-45 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_27080 31861ad8d67f81865114ee697385f9f1 200 Gene3D G3DSA:3.40.30.10 4 198 6.4E-62 T 11-10-2018 AMK58_27080 31861ad8d67f81865114ee697385f9f1 200 PIRSF PIRSF006386 1 200 6.9E-57 T 11-10-2018 IPR014440 HCCA isomerase/glutathione S-transferase kappa Reactome: R-HSA-156590|Reactome: R-HSA-9033241 AMK58_17525 55e6b569ce2cab9b31e532f912075d73 173 Gene3D G3DSA:3.40.50.12280 27 173 4.6E-52 T 11-10-2018 AMK58_17525 55e6b569ce2cab9b31e532f912075d73 173 SUPERFAMILY SSF56770 40 168 5.63E-53 T 11-10-2018 AMK58_17525 55e6b569ce2cab9b31e532f912075d73 173 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 55 166 6.0E-29 T 11-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_24870 b229b8c71a5c1dbd9696f6af52d35b93 551 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 200 512 2.8E-23 T 11-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal AMK58_24870 b229b8c71a5c1dbd9696f6af52d35b93 551 Pfam PF08479 POTRA domain, ShlB-type 63 137 1.3E-20 T 11-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type AMK58_24870 b229b8c71a5c1dbd9696f6af52d35b93 551 Gene3D G3DSA:3.10.20.310 50 137 2.7E-18 T 11-10-2018 AMK58_24870 b229b8c71a5c1dbd9696f6af52d35b93 551 Gene3D G3DSA:2.40.160.50 171 551 8.6E-74 T 11-10-2018 AMK58_28045 beecad2c675a3f56ac7f4b06a14ef079 296 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 160 7.2E-41 T 11-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 AMK58_28045 beecad2c675a3f56ac7f4b06a14ef079 296 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 164 283 3.2E-39 T 11-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 AMK58_28045 beecad2c675a3f56ac7f4b06a14ef079 296 Gene3D G3DSA:3.40.50.720 2 161 5.0E-48 T 11-10-2018 AMK58_28045 beecad2c675a3f56ac7f4b06a14ef079 296 SUPERFAMILY SSF51735 1 161 1.08E-37 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_28045 beecad2c675a3f56ac7f4b06a14ef079 296 PIRSF PIRSF000103 1 294 1.7E-72 T 11-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 AMK58_28045 beecad2c675a3f56ac7f4b06a14ef079 296 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 5 18 - T 11-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 AMK58_28045 beecad2c675a3f56ac7f4b06a14ef079 296 Gene3D G3DSA:1.10.1040.10 163 294 2.3E-39 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMK58_28045 beecad2c675a3f56ac7f4b06a14ef079 296 SUPERFAMILY SSF48179 163 292 4.76E-36 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMK58_27175 40c195d1a7b52e6f4d08d5ab2b0cf2d8 300 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 115 299 9.2E-31 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_27175 40c195d1a7b52e6f4d08d5ab2b0cf2d8 300 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 16 58 2.8E-7 T 11-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AMK58_27175 40c195d1a7b52e6f4d08d5ab2b0cf2d8 300 SUPERFAMILY SSF161098 93 284 4.32E-28 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_27175 40c195d1a7b52e6f4d08d5ab2b0cf2d8 300 Gene3D G3DSA:1.10.3720.10 85 295 1.6E-27 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_24625 06748597d404f84666182e98ee15aa3b 296 Pfam PF03547 Membrane transport protein 13 142 8.7E-7 T 11-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 AMK58_24625 06748597d404f84666182e98ee15aa3b 296 Pfam PF03547 Membrane transport protein 154 291 6.5E-15 T 11-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 AMK58_04790 9fc7b1d1338444c2d0006ee717d2e29f 319 SUPERFAMILY SSF55166 50 301 3.3E-86 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AMK58_04790 9fc7b1d1338444c2d0006ee717d2e29f 319 PIRSF PIRSF018455 9 308 3.3E-98 T 11-10-2018 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 AMK58_04790 9fc7b1d1338444c2d0006ee717d2e29f 319 Gene3D G3DSA:3.30.1380.10 48 303 6.7E-90 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AMK58_04790 9fc7b1d1338444c2d0006ee717d2e29f 319 Pfam PF03411 Penicillin-insensitive murein endopeptidase 64 299 1.6E-92 T 11-10-2018 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 AMK58_00805 5032e40c93856f5052a2e718cc38f58a 249 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 11 237 2.2E-44 T 11-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 AMK58_00805 5032e40c93856f5052a2e718cc38f58a 249 SUPERFAMILY SSF51695 6 240 4.19E-69 T 11-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 AMK58_00805 5032e40c93856f5052a2e718cc38f58a 249 Gene3D G3DSA:3.20.20.190 1 245 7.9E-81 T 11-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 AMK58_04445 d81b416e13c58cb68dfa846b42fc1032 368 Gene3D G3DSA:1.10.287.950 3 123 8.2E-23 T 11-10-2018 AMK58_04445 d81b416e13c58cb68dfa846b42fc1032 368 Gene3D G3DSA:3.30.450.20 143 248 7.6E-7 T 11-10-2018 AMK58_04445 d81b416e13c58cb68dfa846b42fc1032 368 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 54 83 1.8E-11 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_04445 d81b416e13c58cb68dfa846b42fc1032 368 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 25 52 1.8E-11 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_04445 d81b416e13c58cb68dfa846b42fc1032 368 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 22 98 6.5E-18 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_04445 d81b416e13c58cb68dfa846b42fc1032 368 SUPERFAMILY SSF58104 20 93 2.09E-23 T 11-10-2018 AMK58_04105 88bc3bc646a3dccfe4a6ca6ddb11db6c 219 Gene3D G3DSA:3.40.50.1820 11 216 7.0E-29 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_04105 88bc3bc646a3dccfe4a6ca6ddb11db6c 219 Pfam PF01738 Dienelactone hydrolase family 106 197 1.2E-5 T 11-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 AMK58_04105 88bc3bc646a3dccfe4a6ca6ddb11db6c 219 SUPERFAMILY SSF53474 18 215 3.95E-31 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_11505 18e86198ff967ff3b53a04694cb59466 534 SUPERFAMILY SSF51569 3 296 3.66E-79 T 11-10-2018 AMK58_11505 18e86198ff967ff3b53a04694cb59466 534 Gene3D G3DSA:3.20.20.70 5 329 3.8E-104 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_11505 18e86198ff967ff3b53a04694cb59466 534 SUPERFAMILY SSF110921 422 520 4.84E-19 T 11-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMK58_11505 18e86198ff967ff3b53a04694cb59466 534 TIGRFAM TIGR00977 citramal_synth: citramalate synthase 6 527 2.6E-199 T 11-10-2018 IPR005675 Citramalate synthase GO:0019752|GO:0046912 KEGG: 00290+2.3.1.182|KEGG: 00660+2.3.1.182|MetaCyc: PWY-5101 AMK58_11505 18e86198ff967ff3b53a04694cb59466 534 Pfam PF00682 HMGL-like 6 269 1.8E-43 T 11-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 AMK58_11505 18e86198ff967ff3b53a04694cb59466 534 Gene3D G3DSA:3.30.160.270 404 523 1.1E-6 T 11-10-2018 AMK58_11505 18e86198ff967ff3b53a04694cb59466 534 SMART SM00917 378 525 1.9E-35 T 11-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMK58_11505 18e86198ff967ff3b53a04694cb59466 534 Pfam PF08502 LeuA allosteric (dimerisation) domain 380 521 5.7E-27 T 11-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMK58_11505 18e86198ff967ff3b53a04694cb59466 534 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 13 29 - T 11-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMK58_06440 5ae2bccd16ce74eb2fa2f0277042d4d8 542 Gene3D G3DSA:3.40.50.880 286 541 6.0E-97 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_06440 5ae2bccd16ce74eb2fa2f0277042d4d8 542 TIGRFAM TIGR00337 PyrG: CTP synthase 2 534 4.8E-226 T 11-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 AMK58_06440 5ae2bccd16ce74eb2fa2f0277042d4d8 542 Hamap MF_01227 CTP synthase [pyrG]. 2 539 50.7 T 11-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 AMK58_06440 5ae2bccd16ce74eb2fa2f0277042d4d8 542 Pfam PF00117 Glutamine amidotransferase class-I 301 534 6.8E-57 T 11-10-2018 IPR017926 Glutamine amidotransferase AMK58_06440 5ae2bccd16ce74eb2fa2f0277042d4d8 542 SUPERFAMILY SSF52317 289 538 1.08E-79 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_06440 5ae2bccd16ce74eb2fa2f0277042d4d8 542 Pfam PF06418 CTP synthase N-terminus 3 264 4.2E-119 T 11-10-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 AMK58_06440 5ae2bccd16ce74eb2fa2f0277042d4d8 542 SUPERFAMILY SSF52540 1 266 3.99E-118 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_06440 5ae2bccd16ce74eb2fa2f0277042d4d8 542 Gene3D G3DSA:3.40.50.300 1 285 8.8E-123 T 11-10-2018 AMK58_06495 4769a739c6f8baf674eb9972cafa05cb 452 Pfam PF01171 PP-loop family 35 213 6.5E-49 T 11-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 AMK58_06495 4769a739c6f8baf674eb9972cafa05cb 452 Gene3D G3DSA:3.40.50.620 25 244 3.6E-62 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_06495 4769a739c6f8baf674eb9972cafa05cb 452 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 35 213 2.6E-43 T 11-10-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AMK58_06495 4769a739c6f8baf674eb9972cafa05cb 452 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 19 306 19.489 T 11-10-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AMK58_06495 4769a739c6f8baf674eb9972cafa05cb 452 SUPERFAMILY SSF52402 29 212 1.83E-46 T 11-10-2018 AMK58_15055 627f54c1c1ef50f298a5137281f8a67c 533 SUPERFAMILY SSF141523 245 403 1.83E-22 T 11-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMK58_15055 627f54c1c1ef50f298a5137281f8a67c 533 Pfam PF01471 Putative peptidoglycan binding domain 165 220 6.1E-8 T 11-10-2018 IPR002477 Peptidoglycan binding-like AMK58_15055 627f54c1c1ef50f298a5137281f8a67c 533 Pfam PF03734 L,D-transpeptidase catalytic domain 248 409 3.4E-26 T 11-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AMK58_15055 627f54c1c1ef50f298a5137281f8a67c 533 SUPERFAMILY SSF47090 162 224 3.4E-10 T 11-10-2018 IPR036365 PGBD-like superfamily AMK58_09415 9889975b7037ceb66891d5d2eb00b971 81 Gene3D G3DSA:3.40.5.90 1 79 3.5E-33 T 11-10-2018 AMK58_09415 9889975b7037ceb66891d5d2eb00b971 81 Pfam PF09360 Iron-binding zinc finger CDGSH type 17 41 1.3E-10 T 11-10-2018 IPR018967 Iron sulphur-containing domain, CDGSH-type GO:0043231|GO:0051537 AMK58_09415 9889975b7037ceb66891d5d2eb00b971 81 Pfam PF09360 Iron-binding zinc finger CDGSH type 59 77 2.5E-6 T 11-10-2018 IPR018967 Iron sulphur-containing domain, CDGSH-type GO:0043231|GO:0051537 AMK58_09415 9889975b7037ceb66891d5d2eb00b971 81 SMART SM00704 50 79 0.12 T 11-10-2018 IPR018967 Iron sulphur-containing domain, CDGSH-type GO:0043231|GO:0051537 AMK58_09415 9889975b7037ceb66891d5d2eb00b971 81 SMART SM00704 10 47 2.3E-14 T 11-10-2018 IPR018967 Iron sulphur-containing domain, CDGSH-type GO:0043231|GO:0051537 AMK58_20855 770d646bce97ab58a77f3a95cd9a54d8 362 Pfam PF01070 FMN-dependent dehydrogenase 20 356 8.9E-116 T 11-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 AMK58_20855 770d646bce97ab58a77f3a95cd9a54d8 362 Gene3D G3DSA:3.20.20.70 5 360 2.6E-124 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_20855 770d646bce97ab58a77f3a95cd9a54d8 362 SUPERFAMILY SSF51395 7 357 3.36E-92 T 11-10-2018 AMK58_20855 770d646bce97ab58a77f3a95cd9a54d8 362 PIRSF PIRSF000138 2 360 9.3E-113 T 11-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 AMK58_16745 fab6ac419006a2e1454f22bf90a11014 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 17 39 7.1E-6 T 11-10-2018 AMK58_16745 fab6ac419006a2e1454f22bf90a11014 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 51 66 7.1E-6 T 11-10-2018 AMK58_16745 fab6ac419006a2e1454f22bf90a11014 473 SUPERFAMILY SSF56425 258 402 2.39E-26 T 11-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMK58_16745 fab6ac419006a2e1454f22bf90a11014 473 Gene3D G3DSA:3.90.700.10 251 398 1.4E-112 T 11-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMK58_16745 fab6ac419006a2e1454f22bf90a11014 473 Gene3D G3DSA:3.50.50.60 18 462 1.4E-112 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_16745 fab6ac419006a2e1454f22bf90a11014 473 Pfam PF00890 FAD binding domain 18 438 9.8E-58 T 11-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMK58_16745 fab6ac419006a2e1454f22bf90a11014 473 SUPERFAMILY SSF51905 11 469 9.28E-46 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_23460 c2edcf1bf91b50bc460914916e0410ab 590 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 308 327 1.7E-27 T 11-10-2018 AMK58_23460 c2edcf1bf91b50bc460914916e0410ab 590 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 482 497 1.7E-27 T 11-10-2018 AMK58_23460 c2edcf1bf91b50bc460914916e0410ab 590 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 518 530 1.7E-27 T 11-10-2018 AMK58_23460 c2edcf1bf91b50bc460914916e0410ab 590 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 465 480 1.7E-27 T 11-10-2018 AMK58_23460 c2edcf1bf91b50bc460914916e0410ab 590 Gene3D G3DSA:3.20.20.60 249 589 3.6E-111 T 11-10-2018 AMK58_23460 c2edcf1bf91b50bc460914916e0410ab 590 Gene3D G3DSA:1.10.274.10 33 161 2.6E-75 T 11-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 AMK58_23460 c2edcf1bf91b50bc460914916e0410ab 590 Gene3D G3DSA:3.50.30.10 16 248 2.6E-75 T 11-10-2018 AMK58_23460 c2edcf1bf91b50bc460914916e0410ab 590 Pfam PF05524 PEP-utilising enzyme, N-terminal 15 141 1.1E-28 T 11-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 AMK58_23460 c2edcf1bf91b50bc460914916e0410ab 590 SUPERFAMILY SSF47831 37 157 8.76E-26 T 11-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 AMK58_23460 c2edcf1bf91b50bc460914916e0410ab 590 SUPERFAMILY SSF52009 141 260 4.19E-33 T 11-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 AMK58_23460 c2edcf1bf91b50bc460914916e0410ab 590 PIRSF PIRSF000732 9 589 3.2E-197 T 11-10-2018 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 AMK58_23460 c2edcf1bf91b50bc460914916e0410ab 590 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 266 559 9.7E-97 T 11-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 AMK58_23460 c2edcf1bf91b50bc460914916e0410ab 590 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 15 583 4.0E-163 T 11-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 AMK58_23460 c2edcf1bf91b50bc460914916e0410ab 590 Pfam PF00391 PEP-utilising enzyme, mobile domain 168 240 2.3E-19 T 11-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AMK58_23460 c2edcf1bf91b50bc460914916e0410ab 590 SUPERFAMILY SSF51621 264 566 4.19E-97 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMK58_23460 c2edcf1bf91b50bc460914916e0410ab 590 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 465 483 - T 11-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 AMK58_13260 27e02a1366978caa5dbf2bd77ec1adbc 573 Gene3D G3DSA:3.40.50.970 189 385 8.8E-62 T 11-10-2018 AMK58_13260 27e02a1366978caa5dbf2bd77ec1adbc 573 SUPERFAMILY SSF52922 469 567 3.28E-15 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMK58_13260 27e02a1366978caa5dbf2bd77ec1adbc 573 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 14 175 7.2E-23 T 11-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 AMK58_13260 27e02a1366978caa5dbf2bd77ec1adbc 573 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 212 446 5.8E-52 T 11-10-2018 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 AMK58_13260 27e02a1366978caa5dbf2bd77ec1adbc 573 TIGRFAM TIGR03710 OAFO_sf: 2-oxoacid:acceptor oxidoreductase, alpha subunit 6 568 6.9E-165 T 11-10-2018 IPR022367 2-oxoacid:acceptor oxidoreductase, alpha subunit KEGG: 00020+1.2.7.3|KEGG: 00720+1.2.7.3|MetaCyc: PWY-5392|MetaCyc: PWY-6969 AMK58_13260 27e02a1366978caa5dbf2bd77ec1adbc 573 SUPERFAMILY SSF53323 6 222 1.44E-24 T 11-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 AMK58_13260 27e02a1366978caa5dbf2bd77ec1adbc 573 Gene3D G3DSA:3.40.50.920 466 572 1.8E-17 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMK58_13260 27e02a1366978caa5dbf2bd77ec1adbc 573 SUPERFAMILY SSF52518 200 454 8.1E-58 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMK58_13260 27e02a1366978caa5dbf2bd77ec1adbc 573 Gene3D G3DSA:3.40.920.10 2 181 2.5E-21 T 11-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 AMK58_03390 52b3c7018c6c19e27cbf85b0eedaf068 163 Pfam PF05163 DinB family 2 158 1.1E-36 T 11-10-2018 IPR007837 DNA damage-inducible protein DinB AMK58_03390 52b3c7018c6c19e27cbf85b0eedaf068 163 SUPERFAMILY SSF109854 4 145 1.68E-37 T 11-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes AMK58_03390 52b3c7018c6c19e27cbf85b0eedaf068 163 Gene3D G3DSA:1.20.120.450 1 160 5.1E-47 T 11-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes AMK58_20850 d1af836319d59ffd6716f0e4270e4dd5 252 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_20850 d1af836319d59ffd6716f0e4270e4dd5 252 Pfam PF00005 ABC transporter 18 164 1.9E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_20850 d1af836319d59ffd6716f0e4270e4dd5 252 SUPERFAMILY SSF52540 2 225 3.22E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_20850 d1af836319d59ffd6716f0e4270e4dd5 252 SMART SM00382 26 213 7.8E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_20850 d1af836319d59ffd6716f0e4270e4dd5 252 Gene3D G3DSA:3.40.50.300 1 251 2.1E-68 T 11-10-2018 AMK58_18415 7337d07a85966e15cf6f5aee50627ef1 394 Pfam PF02405 Permease MlaE 179 388 3.7E-72 T 11-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 AMK58_18415 7337d07a85966e15cf6f5aee50627ef1 394 SUPERFAMILY SSF52091 31 114 1.45E-8 T 11-10-2018 IPR036513 STAS domain superfamily AMK58_18415 7337d07a85966e15cf6f5aee50627ef1 394 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 158 390 1.1E-73 T 11-10-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria AMK58_18415 7337d07a85966e15cf6f5aee50627ef1 394 Gene3D G3DSA:3.30.750.24 26 142 4.4E-7 T 11-10-2018 IPR036513 STAS domain superfamily AMK58_18415 7337d07a85966e15cf6f5aee50627ef1 394 Pfam PF13466 STAS domain 40 113 1.2E-7 T 11-10-2018 IPR002645 STAS domain AMK58_22505 e8e76d7ab4a747d840309622b238dcb0 133 Pfam PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) 18 48 1.9E-11 T 11-10-2018 IPR022002 Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal AMK58_22505 e8e76d7ab4a747d840309622b238dcb0 133 SUPERFAMILY SSF50249 4 121 8.74E-26 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_22505 e8e76d7ab4a747d840309622b238dcb0 133 Pfam PF01796 DUF35 OB-fold domain, acyl-CoA-associated 55 116 2.2E-16 T 11-10-2018 IPR002878 Domain of unknown function DUF35, OB-fold, C-terminal AMK58_00480 d8d38d9659cef619818507fa754e3995 122 Gene3D G3DSA:3.30.428.10 1 120 1.3E-30 T 11-10-2018 IPR036265 HIT-like superfamily AMK58_00480 d8d38d9659cef619818507fa754e3995 122 PRINTS PR00332 Histidine triad family signature 100 110 2.2E-19 T 11-10-2018 IPR001310 Histidine triad (HIT) protein AMK58_00480 d8d38d9659cef619818507fa754e3995 122 PRINTS PR00332 Histidine triad family signature 31 49 2.2E-19 T 11-10-2018 IPR001310 Histidine triad (HIT) protein AMK58_00480 d8d38d9659cef619818507fa754e3995 122 PRINTS PR00332 Histidine triad family signature 10 26 2.2E-19 T 11-10-2018 IPR001310 Histidine triad (HIT) protein AMK58_00480 d8d38d9659cef619818507fa754e3995 122 Pfam PF01230 HIT domain 16 114 6.4E-28 T 11-10-2018 IPR001310 Histidine triad (HIT) protein AMK58_00480 d8d38d9659cef619818507fa754e3995 122 ProSitePatterns PS00892 HIT domain signature. 93 111 - T 11-10-2018 IPR019808 Histidine triad, conserved site AMK58_00480 d8d38d9659cef619818507fa754e3995 122 SUPERFAMILY SSF54197 4 117 1.7E-31 T 11-10-2018 IPR036265 HIT-like superfamily AMK58_16695 c9fe39287256b7238455b718a16558a0 284 SUPERFAMILY SSF64288 60 238 7.57E-44 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily AMK58_16695 c9fe39287256b7238455b718a16558a0 284 SUPERFAMILY SSF46785 10 82 1.77E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_16695 c9fe39287256b7238455b718a16558a0 284 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 72 1.7E-21 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_16695 c9fe39287256b7238455b718a16558a0 284 Pfam PF07702 UTRA domain 95 232 5.7E-31 T 11-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AMK58_16695 c9fe39287256b7238455b718a16558a0 284 Gene3D G3DSA:3.40.1410.10 85 240 6.2E-38 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily AMK58_16695 c9fe39287256b7238455b718a16558a0 284 SMART SM00866 94 233 1.1E-32 T 11-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AMK58_16695 c9fe39287256b7238455b718a16558a0 284 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 32 46 1.4E-8 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_16695 c9fe39287256b7238455b718a16558a0 284 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 46 62 1.4E-8 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_16695 c9fe39287256b7238455b718a16558a0 284 Gene3D G3DSA:1.10.10.10 3 80 2.4E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_16695 c9fe39287256b7238455b718a16558a0 284 SMART SM00345 13 72 3.7E-25 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_03790 57f8765ba8b394ed05c20dd8a0a2c974 221 Gene3D G3DSA:3.40.50.1820 6 212 1.9E-10 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_03790 57f8765ba8b394ed05c20dd8a0a2c974 221 SUPERFAMILY SSF53474 7 193 1.17E-12 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_03555 d94cb507dff1a11b17822c2242eebb7b 131 SUPERFAMILY SSF51182 6 130 2.31E-30 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily AMK58_03555 d94cb507dff1a11b17822c2242eebb7b 131 Gene3D G3DSA:2.60.120.10 1 130 1.4E-52 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_03555 d94cb507dff1a11b17822c2242eebb7b 131 Pfam PF07883 Cupin domain 42 97 2.1E-11 T 11-10-2018 IPR013096 Cupin 2, conserved barrel AMK58_16400 3839797b797f4f50cbe77f7f149328d2 344 PIRSF PIRSF006470 7 341 5.9E-117 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 AMK58_16400 3839797b797f4f50cbe77f7f149328d2 344 Gene3D G3DSA:3.40.190.170 35 344 2.6E-107 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily AMK58_16400 3839797b797f4f50cbe77f7f149328d2 344 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 42 324 1.9E-92 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 AMK58_16400 3839797b797f4f50cbe77f7f149328d2 344 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 42 297 1.5E-83 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 AMK58_04610 7fd97f8a829e40511c8cf96703762eed 68 Pfam PF05082 Rop-like 2 64 8.4E-30 T 11-10-2018 IPR007774 Putative nitrogen fixation protein AMK58_04610 7fd97f8a829e40511c8cf96703762eed 68 PIRSF PIRSF037676 1 67 9.4E-27 T 11-10-2018 IPR007774 Putative nitrogen fixation protein AMK58_04610 7fd97f8a829e40511c8cf96703762eed 68 Gene3D G3DSA:1.10.287.660 1 67 3.9E-28 T 11-10-2018 IPR029012 Helix hairpin bin domain superfamily AMK58_07110 5c025c2926982cc8ce407e7e77db5149 136 ProSitePatterns PS00550 Hemerythrin family signature. 59 82 - T 11-10-2018 IPR016131 Haemerythrin, iron-binding site GO:0046872 AMK58_07110 5c025c2926982cc8ce407e7e77db5149 136 Gene3D G3DSA:1.20.120.50 2 134 1.5E-34 T 11-10-2018 IPR035938 Hemerythrin-like superfamily AMK58_07110 5c025c2926982cc8ce407e7e77db5149 136 SUPERFAMILY SSF47188 1 130 1.83E-29 T 11-10-2018 IPR035938 Hemerythrin-like superfamily AMK58_07110 5c025c2926982cc8ce407e7e77db5149 136 Pfam PF01814 Hemerythrin HHE cation binding domain 17 129 2.0E-11 T 11-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 AMK58_07110 5c025c2926982cc8ce407e7e77db5149 136 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 5 130 8.0E-32 T 11-10-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 AMK58_20300 0d9e70f03c303c24914642fd6cb7374a 194 Pfam PF07883 Cupin domain 119 188 4.5E-18 T 11-10-2018 IPR013096 Cupin 2, conserved barrel AMK58_20300 0d9e70f03c303c24914642fd6cb7374a 194 Gene3D G3DSA:2.60.120.10 89 193 4.9E-20 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_20300 0d9e70f03c303c24914642fd6cb7374a 194 SUPERFAMILY SSF47413 8 73 3.49E-15 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMK58_20300 0d9e70f03c303c24914642fd6cb7374a 194 SUPERFAMILY SSF51182 53 192 9.4E-25 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily AMK58_20300 0d9e70f03c303c24914642fd6cb7374a 194 SMART SM00530 13 68 2.2E-11 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMK58_20300 0d9e70f03c303c24914642fd6cb7374a 194 Gene3D G3DSA:1.10.260.40 4 73 7.3E-16 T 11-10-2018 AMK58_20300 0d9e70f03c303c24914642fd6cb7374a 194 Pfam PF13560 Helix-turn-helix domain 11 60 4.8E-12 T 11-10-2018 AMK58_23900 8735386f8ed5cef741162866009a9de4 193 ProSitePatterns PS01081 TetR-type HTH domain signature. 25 55 - T 11-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMK58_23900 8735386f8ed5cef741162866009a9de4 193 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 59 3.6E-19 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_23900 8735386f8ed5cef741162866009a9de4 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 1.3E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_23900 8735386f8ed5cef741162866009a9de4 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 1.3E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_23900 8735386f8ed5cef741162866009a9de4 193 SUPERFAMILY SSF46689 6 79 1.5E-18 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_23900 8735386f8ed5cef741162866009a9de4 193 SUPERFAMILY SSF48498 80 188 1.78E-8 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMK58_23900 8735386f8ed5cef741162866009a9de4 193 Gene3D G3DSA:1.10.357.10 3 190 1.1E-35 T 11-10-2018 AMK58_11405 8019951d687a3d7e220fc9f0fcb9ed0a 259 Pfam PF05742 Transport and Golgi organisation 2 1 157 1.0E-24 T 11-10-2018 IPR008551 Transport and Golgi organisation protein 2 AMK58_11405 8019951d687a3d7e220fc9f0fcb9ed0a 259 Gene3D G3DSA:3.60.60.10 2 256 1.1E-7 T 11-10-2018 AMK58_02475 af56e418281f60472fc4f21ca24a4e7b 278 SUPERFAMILY SSF54506 4 130 8.79E-41 T 11-10-2018 AMK58_02475 af56e418281f60472fc4f21ca24a4e7b 278 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 4 271 1.9E-84 T 11-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AMK58_02475 af56e418281f60472fc4f21ca24a4e7b 278 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 3 273 35.782 T 11-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AMK58_02475 af56e418281f60472fc4f21ca24a4e7b 278 Gene3D G3DSA:3.10.310.10 4 269 3.2E-94 T 11-10-2018 AMK58_02475 af56e418281f60472fc4f21ca24a4e7b 278 Pfam PF01678 Diaminopimelate epimerase 152 264 1.1E-32 T 11-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AMK58_02475 af56e418281f60472fc4f21ca24a4e7b 278 Pfam PF01678 Diaminopimelate epimerase 5 123 1.3E-23 T 11-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AMK58_02475 af56e418281f60472fc4f21ca24a4e7b 278 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 66 80 - T 11-10-2018 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AMK58_02475 af56e418281f60472fc4f21ca24a4e7b 278 Gene3D G3DSA:3.10.310.10 115 260 3.2E-94 T 11-10-2018 AMK58_02475 af56e418281f60472fc4f21ca24a4e7b 278 SUPERFAMILY SSF54506 145 270 4.26E-51 T 11-10-2018 AMK58_08835 481b3621cda4bf42abb1f65ddf13feaf 437 SMART SM00479 246 419 6.6E-5 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AMK58_08835 481b3621cda4bf42abb1f65ddf13feaf 437 SUPERFAMILY SSF55785 116 196 1.93E-8 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_08835 481b3621cda4bf42abb1f65ddf13feaf 437 Pfam PF13188 PAS domain 116 163 2.3E-4 T 11-10-2018 IPR000014 PAS domain AMK58_08835 481b3621cda4bf42abb1f65ddf13feaf 437 Pfam PF00929 Exonuclease 267 391 2.6E-5 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AMK58_08835 481b3621cda4bf42abb1f65ddf13feaf 437 Gene3D G3DSA:3.30.420.10 253 419 3.5E-18 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMK58_08835 481b3621cda4bf42abb1f65ddf13feaf 437 SUPERFAMILY SSF53098 261 392 7.36E-18 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMK58_27440 eb1c72bf9b414afc178b43bf8f0eb67e 252 Gene3D G3DSA:3.40.190.10 33 246 2.4E-41 T 11-10-2018 AMK58_27440 eb1c72bf9b414afc178b43bf8f0eb67e 252 PIRSF PIRSF004846 1 250 1.2E-46 T 11-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 AMK58_27440 eb1c72bf9b414afc178b43bf8f0eb67e 252 Pfam PF13531 Bacterial extracellular solute-binding protein 27 246 5.7E-47 T 11-10-2018 AMK58_27440 eb1c72bf9b414afc178b43bf8f0eb67e 252 Gene3D G3DSA:3.40.190.10 103 211 2.4E-41 T 11-10-2018 AMK58_27440 eb1c72bf9b414afc178b43bf8f0eb67e 252 SUPERFAMILY SSF53850 24 248 6.18E-50 T 11-10-2018 AMK58_27440 eb1c72bf9b414afc178b43bf8f0eb67e 252 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 32 245 1.6E-27 T 11-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 AMK58_21385 43bea0c5133db4563611af26eae35efd 903 SUPERFAMILY SSF53706 25 590 1.14E-186 T 11-10-2018 AMK58_21385 43bea0c5133db4563611af26eae35efd 903 Gene3D G3DSA:2.40.40.20 600 723 7.2E-31 T 11-10-2018 AMK58_21385 43bea0c5133db4563611af26eae35efd 903 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 25 75 1.9E-18 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_21385 43bea0c5133db4563611af26eae35efd 903 Gene3D G3DSA:2.20.25.90 21 77 1.3E-17 T 11-10-2018 AMK58_21385 43bea0c5133db4563611af26eae35efd 903 Gene3D G3DSA:3.40.50.740 92 583 7.0E-167 T 11-10-2018 AMK58_21385 43bea0c5133db4563611af26eae35efd 903 Pfam PF00384 Molybdopterin oxidoreductase 90 503 9.5E-80 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_21385 43bea0c5133db4563611af26eae35efd 903 Gene3D G3DSA:1.10.10.1100 846 900 1.2E-8 T 11-10-2018 AMK58_21385 43bea0c5133db4563611af26eae35efd 903 Gene3D G3DSA:3.40.228.10 158 587 7.0E-167 T 11-10-2018 AMK58_21385 43bea0c5133db4563611af26eae35efd 903 PIRSF PIRSF036643 15 725 2.6E-138 T 11-10-2018 AMK58_21385 43bea0c5133db4563611af26eae35efd 903 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 29 47 - T 11-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 AMK58_21385 43bea0c5133db4563611af26eae35efd 903 Pfam PF04324 BFD-like [2Fe-2S] binding domain 846 895 2.9E-15 T 11-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain AMK58_21385 43bea0c5133db4563611af26eae35efd 903 SMART SM00926 24 78 1.9E-18 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_21385 43bea0c5133db4563611af26eae35efd 903 Pfam PF01568 Molydopterin dinucleotide binding domain 602 713 4.1E-27 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 AMK58_21385 43bea0c5133db4563611af26eae35efd 903 SUPERFAMILY SSF50692 592 743 6.42E-38 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily AMK58_03130 97028d05fb1857af3ee9e4ff9b960a0d 323 SUPERFAMILY SSF52540 6 297 3.3E-44 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_03130 97028d05fb1857af3ee9e4ff9b960a0d 323 PIRSF PIRSF002849 2 323 4.6E-127 T 11-10-2018 AMK58_03130 97028d05fb1857af3ee9e4ff9b960a0d 323 Gene3D G3DSA:1.10.8.300 204 319 1.1E-35 T 11-10-2018 AMK58_03130 97028d05fb1857af3ee9e4ff9b960a0d 323 Gene3D G3DSA:3.40.50.300 18 187 1.3E-46 T 11-10-2018 AMK58_03130 97028d05fb1857af3ee9e4ff9b960a0d 323 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 38 170 2.3E-61 T 11-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 AMK58_22795 d46c3a3191796f2744dc378ddebe20d1 152 Pfam PF12802 MarR family 36 93 1.2E-13 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_22795 d46c3a3191796f2744dc378ddebe20d1 152 SMART SM00347 30 130 1.7E-19 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_22795 d46c3a3191796f2744dc378ddebe20d1 152 Gene3D G3DSA:1.10.10.10 2 142 1.9E-37 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_22795 d46c3a3191796f2744dc378ddebe20d1 152 SUPERFAMILY SSF46785 7 143 1.86E-32 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_22795 d46c3a3191796f2744dc378ddebe20d1 152 PRINTS PR00598 Bacterial regulatory protein MarR family signature 90 106 3.9E-8 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_22795 d46c3a3191796f2744dc378ddebe20d1 152 PRINTS PR00598 Bacterial regulatory protein MarR family signature 71 86 3.9E-8 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_22795 d46c3a3191796f2744dc378ddebe20d1 152 PRINTS PR00598 Bacterial regulatory protein MarR family signature 54 70 3.9E-8 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_22795 d46c3a3191796f2744dc378ddebe20d1 152 ProSitePatterns PS01117 MarR-type HTH domain signature. 69 103 - T 11-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site AMK58_18790 d5875b5fdade4ead5b27788d1836ed58 250 Pfam PF05036 Sporulation related domain 168 243 4.5E-10 T 11-10-2018 IPR007730 Sporulation-like domain GO:0042834 AMK58_18790 d5875b5fdade4ead5b27788d1836ed58 250 SUPERFAMILY SSF110997 169 242 2.09E-7 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 AMK58_24070 6e931289609da1a03fd5258a93081b29 319 PIRSF PIRSF000428 13 312 2.1E-92 T 11-10-2018 IPR012147 Phosphate acetyl/butyryltransferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AMK58_24070 6e931289609da1a03fd5258a93081b29 319 SUPERFAMILY SSF53659 17 310 7.81E-72 T 11-10-2018 AMK58_24070 6e931289609da1a03fd5258a93081b29 319 Gene3D G3DSA:3.40.718.10 13 309 2.0E-103 T 11-10-2018 AMK58_24070 6e931289609da1a03fd5258a93081b29 319 Pfam PF01515 Phosphate acetyl/butaryl transferase 90 305 9.1E-50 T 11-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AMK58_19155 77cfc91fc901769e1971e5d9de6272d2 298 Gene3D G3DSA:1.10.3660.10 186 292 2.8E-36 T 11-10-2018 AMK58_19155 77cfc91fc901769e1971e5d9de6272d2 298 SUPERFAMILY SSF51735 12 178 3.83E-50 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_19155 77cfc91fc901769e1971e5d9de6272d2 298 Pfam PF02153 Prephenate dehydrogenase 25 282 2.1E-77 T 11-10-2018 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 AMK58_19155 77cfc91fc901769e1971e5d9de6272d2 298 SUPERFAMILY SSF48179 182 292 4.87E-35 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMK58_19155 77cfc91fc901769e1971e5d9de6272d2 298 Gene3D G3DSA:3.40.50.720 11 185 2.2E-60 T 11-10-2018 AMK58_24280 c6ffcd5cade77299a3b703f94b7d0425 29 TIGRFAM TIGR02115 potass_kdpF: K+-transporting ATPase, F subunit 6 29 6.3E-12 T 11-10-2018 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 AMK58_24280 c6ffcd5cade77299a3b703f94b7d0425 29 Pfam PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) 6 29 3.5E-12 T 11-10-2018 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 AMK58_03815 c17ab591bf9047430e5992433adbfb6a 357 Gene3D G3DSA:2.30.42.10 126 219 1.0E-16 T 11-10-2018 AMK58_03815 c17ab591bf9047430e5992433adbfb6a 357 SMART SM00228 105 209 2.8E-6 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMK58_03815 c17ab591bf9047430e5992433adbfb6a 357 SUPERFAMILY SSF50156 127 216 1.31E-14 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 AMK58_07185 21756d4631d115411ff35bea96f19713 236 PIRSF PIRSF003107 4 223 1.2E-61 T 11-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 AMK58_07185 21756d4631d115411ff35bea96f19713 236 SUPERFAMILY SSF109755 9 224 4.92E-66 T 11-10-2018 AMK58_07185 21756d4631d115411ff35bea96f19713 236 Pfam PF01895 PhoU domain 23 108 1.6E-21 T 11-10-2018 IPR026022 PhoU domain AMK58_07185 21756d4631d115411ff35bea96f19713 236 Pfam PF01895 PhoU domain 125 208 1.9E-16 T 11-10-2018 IPR026022 PhoU domain AMK58_07185 21756d4631d115411ff35bea96f19713 236 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 9 216 4.8E-64 T 11-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 AMK58_07185 21756d4631d115411ff35bea96f19713 236 Gene3D G3DSA:1.20.58.220 8 218 4.0E-69 T 11-10-2018 IPR038078 PhoU-like domain superfamily AMK58_08040 d6e7035e21890a640fda250d942aad83 225 Gene3D G3DSA:1.10.10.10 7 210 1.9E-16 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_08040 d6e7035e21890a640fda250d942aad83 225 SMART SM00421 138 195 1.3E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_08040 d6e7035e21890a640fda250d942aad83 225 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 171 2.9E-6 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_08040 d6e7035e21890a640fda250d942aad83 225 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 171 183 2.9E-6 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_08040 d6e7035e21890a640fda250d942aad83 225 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 141 155 2.9E-6 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_08040 d6e7035e21890a640fda250d942aad83 225 Pfam PF00196 Bacterial regulatory proteins, luxR family 140 194 1.8E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_08040 d6e7035e21890a640fda250d942aad83 225 SUPERFAMILY SSF46894 123 198 1.33E-14 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMK58_08735 3c3913579068e4d1fbac272f2995cc9d 336 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 32 315 1.6E-108 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 AMK58_08735 3c3913579068e4d1fbac272f2995cc9d 336 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 32 288 2.3E-102 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 AMK58_08735 3c3913579068e4d1fbac272f2995cc9d 336 PIRSF PIRSF006470 1 332 9.1E-138 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 AMK58_08735 3c3913579068e4d1fbac272f2995cc9d 336 Gene3D G3DSA:3.40.190.170 27 329 4.8E-105 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily AMK58_27655 2ebcb677b3f10e2be1ef2cd895ef72d3 323 PIRSF PIRSF017082 2 323 5.6E-95 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 AMK58_27655 2ebcb677b3f10e2be1ef2cd895ef72d3 323 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 49 320 9.9E-28 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 AMK58_27655 2ebcb677b3f10e2be1ef2cd895ef72d3 323 Gene3D G3DSA:3.40.190.10 125 249 1.1E-70 T 11-10-2018 AMK58_27655 2ebcb677b3f10e2be1ef2cd895ef72d3 323 SUPERFAMILY SSF53850 36 295 5.16E-9 T 11-10-2018 AMK58_27655 2ebcb677b3f10e2be1ef2cd895ef72d3 323 Gene3D G3DSA:3.40.190.150 31 313 1.1E-70 T 11-10-2018 AMK58_20455 bc61b6232accd35202bfc99dadefbdbb 556 Gene3D G3DSA:3.40.50.12780 15 445 6.5E-113 T 11-10-2018 AMK58_20455 bc61b6232accd35202bfc99dadefbdbb 556 SUPERFAMILY SSF56801 21 547 8.77E-147 T 11-10-2018 AMK58_20455 bc61b6232accd35202bfc99dadefbdbb 556 Pfam PF00501 AMP-binding enzyme 33 450 6.1E-97 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMK58_20455 bc61b6232accd35202bfc99dadefbdbb 556 Pfam PF13193 AMP-binding enzyme C-terminal domain 459 534 6.0E-23 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMK58_20455 bc61b6232accd35202bfc99dadefbdbb 556 ProSitePatterns PS00455 Putative AMP-binding domain signature. 193 204 - T 11-10-2018 IPR020845 AMP-binding, conserved site AMK58_20455 bc61b6232accd35202bfc99dadefbdbb 556 Gene3D G3DSA:3.30.300.310 446 549 4.7E-35 T 11-10-2018 AMK58_09920 c327942e5a74ddd8b3ddfe9980edd11b 405 TIGRFAM TIGR00127 nadp_idh_euk: isocitrate dehydrogenase, NADP-dependent 2 404 2.3E-220 T 11-10-2018 IPR004790 Isocitrate dehydrogenase NADP-dependent GO:0004450|GO:0006102|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 AMK58_09920 c327942e5a74ddd8b3ddfe9980edd11b 405 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 5 394 2.3E-71 T 11-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 AMK58_09920 c327942e5a74ddd8b3ddfe9980edd11b 405 PIRSF PIRSF000108 1 405 1.2E-228 T 11-10-2018 IPR004790 Isocitrate dehydrogenase NADP-dependent GO:0004450|GO:0006102|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 AMK58_09920 c327942e5a74ddd8b3ddfe9980edd11b 405 Gene3D G3DSA:3.40.718.10 1 405 3.2E-221 T 11-10-2018 AMK58_09920 c327942e5a74ddd8b3ddfe9980edd11b 405 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 270 289 - T 11-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 AMK58_09920 c327942e5a74ddd8b3ddfe9980edd11b 405 SUPERFAMILY SSF53659 1 403 7.1E-158 T 11-10-2018 AMK58_09920 c327942e5a74ddd8b3ddfe9980edd11b 405 SMART SM01329 9 395 1.1E-138 T 11-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 AMK58_23185 48f3d2a089c570222a7774a930429786 552 SUPERFAMILY SSF46785 20 92 1.71E-12 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_23185 48f3d2a089c570222a7774a930429786 552 Pfam PF00501 AMP-binding enzyme 135 548 2.3E-65 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMK58_23185 48f3d2a089c570222a7774a930429786 552 SMART SM00346 19 96 7.8E-10 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMK58_23185 48f3d2a089c570222a7774a930429786 552 Pfam PF09339 IclR helix-turn-helix domain 21 73 3.9E-12 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMK58_23185 48f3d2a089c570222a7774a930429786 552 Gene3D G3DSA:1.10.10.10 19 82 2.1E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_23185 48f3d2a089c570222a7774a930429786 552 Gene3D G3DSA:3.40.50.12780 120 542 1.3E-86 T 11-10-2018 AMK58_23185 48f3d2a089c570222a7774a930429786 552 SUPERFAMILY SSF56801 132 547 2.35E-82 T 11-10-2018 AMK58_17125 0b25e633f4e62390a232ecfa7fa4f15a 288 PRINTS PR01438 Universal stress protein signature 248 260 8.0E-10 T 11-10-2018 IPR006015 Universal stress protein A AMK58_17125 0b25e633f4e62390a232ecfa7fa4f15a 288 PRINTS PR01438 Universal stress protein signature 3 21 8.0E-10 T 11-10-2018 IPR006015 Universal stress protein A AMK58_17125 0b25e633f4e62390a232ecfa7fa4f15a 288 PRINTS PR01438 Universal stress protein signature 266 288 8.0E-10 T 11-10-2018 IPR006015 Universal stress protein A AMK58_17125 0b25e633f4e62390a232ecfa7fa4f15a 288 SUPERFAMILY SSF52402 168 288 8.37E-22 T 11-10-2018 AMK58_17125 0b25e633f4e62390a232ecfa7fa4f15a 288 SUPERFAMILY SSF52402 1 159 1.0E-8 T 11-10-2018 AMK58_17125 0b25e633f4e62390a232ecfa7fa4f15a 288 Gene3D G3DSA:3.40.50.12370 5 288 7.4E-29 T 11-10-2018 AMK58_17125 0b25e633f4e62390a232ecfa7fa4f15a 288 Pfam PF00582 Universal stress protein family 218 287 1.0E-9 T 11-10-2018 IPR006016 UspA AMK58_02105 f2c19b24b6ca9616f040a044e400ed4e 550 Pfam PF07940 Heparinase II/III-like protein 303 535 2.3E-63 T 11-10-2018 IPR012480 Heparinase II/III-like GO:0016829 AMK58_02105 f2c19b24b6ca9616f040a044e400ed4e 550 Pfam PF16889 Heparinase II/III N-terminus 124 295 1.3E-6 T 11-10-2018 IPR031680 Heparin-sulfate lyase, N-terminal MetaCyc: PWY-7651 AMK58_02105 f2c19b24b6ca9616f040a044e400ed4e 550 Gene3D G3DSA:1.50.10.100 53 303 6.5E-35 T 11-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 AMK58_02105 f2c19b24b6ca9616f040a044e400ed4e 550 Gene3D G3DSA:2.70.98.70 320 532 2.7E-8 T 11-10-2018 AMK58_19370 426c0fa9d83d510629f18b74b4a9edde 772 Gene3D G3DSA:3.30.450.20 346 476 3.1E-15 T 11-10-2018 AMK58_19370 426c0fa9d83d510629f18b74b4a9edde 772 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 357 478 1.7E-7 T 11-10-2018 IPR000014 PAS domain AMK58_19370 426c0fa9d83d510629f18b74b4a9edde 772 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 636 750 5.7E-24 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_19370 426c0fa9d83d510629f18b74b4a9edde 772 SUPERFAMILY SSF55874 592 750 1.57E-36 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_19370 426c0fa9d83d510629f18b74b4a9edde 772 SMART SM00387 633 751 4.5E-27 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_19370 426c0fa9d83d510629f18b74b4a9edde 772 SUPERFAMILY SSF55785 346 469 6.11E-14 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_19370 426c0fa9d83d510629f18b74b4a9edde 772 Gene3D G3DSA:3.30.565.10 592 752 6.1E-37 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_19370 426c0fa9d83d510629f18b74b4a9edde 772 PRINTS PR00344 Bacterial sensor protein C-terminal signature 697 707 1.2E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_19370 426c0fa9d83d510629f18b74b4a9edde 772 PRINTS PR00344 Bacterial sensor protein C-terminal signature 679 693 1.2E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_19370 426c0fa9d83d510629f18b74b4a9edde 772 PRINTS PR00344 Bacterial sensor protein C-terminal signature 735 748 1.2E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_19370 426c0fa9d83d510629f18b74b4a9edde 772 PRINTS PR00344 Bacterial sensor protein C-terminal signature 710 728 1.2E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_19370 426c0fa9d83d510629f18b74b4a9edde 772 Pfam PF00989 PAS fold 361 468 7.9E-6 T 11-10-2018 IPR013767 PAS fold GO:0006355 AMK58_19370 426c0fa9d83d510629f18b74b4a9edde 772 Gene3D G3DSA:1.10.287.130 483 585 1.2E-18 T 11-10-2018 AMK58_01735 9db94f06b2508e7d3921c7670e9bf33c 332 Gene3D G3DSA:3.40.470.10 14 248 9.3E-22 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMK58_01735 9db94f06b2508e7d3921c7670e9bf33c 332 Pfam PF03167 Uracil DNA glycosylase superfamily 89 178 6.9E-7 T 11-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMK58_01735 9db94f06b2508e7d3921c7670e9bf33c 332 SUPERFAMILY SSF52141 14 177 4.25E-13 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMK58_11890 babd818f97ff0705ae0311f3740e2c3d 294 ProSitePatterns PS00857 Prephenate dehydratase signature 1. 157 179 - T 11-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 AMK58_11890 babd818f97ff0705ae0311f3740e2c3d 294 Gene3D G3DSA:3.40.190.10 89 170 8.2E-24 T 11-10-2018 AMK58_11890 babd818f97ff0705ae0311f3740e2c3d 294 Gene3D G3DSA:3.40.190.10 1 88 6.1E-27 T 11-10-2018 AMK58_11890 babd818f97ff0705ae0311f3740e2c3d 294 Gene3D G3DSA:3.30.70.260 194 282 2.4E-18 T 11-10-2018 AMK58_11890 babd818f97ff0705ae0311f3740e2c3d 294 Pfam PF00800 Prephenate dehydratase 7 183 6.3E-52 T 11-10-2018 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 AMK58_11890 babd818f97ff0705ae0311f3740e2c3d 294 SUPERFAMILY SSF55021 176 280 3.09E-20 T 11-10-2018 AMK58_11890 babd818f97ff0705ae0311f3740e2c3d 294 PIRSF PIRSF001500 2 283 8.5E-60 T 11-10-2018 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 AMK58_11890 babd818f97ff0705ae0311f3740e2c3d 294 SUPERFAMILY SSF53850 7 186 3.8E-55 T 11-10-2018 AMK58_04010 97d309f705b8feefba653310134e9108 293 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 13 26 - T 11-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 AMK58_04010 97d309f705b8feefba653310134e9108 293 Gene3D G3DSA:3.40.50.720 1 167 2.8E-51 T 11-10-2018 AMK58_04010 97d309f705b8feefba653310134e9108 293 SUPERFAMILY SSF48179 169 291 7.03E-41 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMK58_04010 97d309f705b8feefba653310134e9108 293 Gene3D G3DSA:1.10.1040.10 168 293 3.1E-39 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMK58_04010 97d309f705b8feefba653310134e9108 293 SUPERFAMILY SSF51735 10 169 5.33E-50 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_04010 97d309f705b8feefba653310134e9108 293 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 11 168 2.1E-46 T 11-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 AMK58_04010 97d309f705b8feefba653310134e9108 293 PIRSF PIRSF000103 3 293 6.8E-70 T 11-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 AMK58_04010 97d309f705b8feefba653310134e9108 293 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 171 288 1.7E-34 T 11-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 AMK58_10900 12ac5a1c1ed68f768623d68d01194851 160 SUPERFAMILY SSF47188 9 135 9.94E-27 T 11-10-2018 IPR035938 Hemerythrin-like superfamily AMK58_10900 12ac5a1c1ed68f768623d68d01194851 160 ProSitePatterns PS00550 Hemerythrin family signature. 65 88 - T 11-10-2018 IPR016131 Haemerythrin, iron-binding site GO:0046872 AMK58_10900 12ac5a1c1ed68f768623d68d01194851 160 Pfam PF01814 Hemerythrin HHE cation binding domain 20 132 1.1E-5 T 11-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 AMK58_10900 12ac5a1c1ed68f768623d68d01194851 160 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 13 135 6.5E-28 T 11-10-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 AMK58_10900 12ac5a1c1ed68f768623d68d01194851 160 Gene3D G3DSA:1.20.120.50 7 140 1.3E-27 T 11-10-2018 IPR035938 Hemerythrin-like superfamily AMK58_17905 f586d9c51932905041bcad0c4e704be0 63 Pfam PF11154 Protein of unknown function (DUF2934) 2 36 2.9E-15 T 11-10-2018 IPR021327 Protein of unknown function DUF2934 AMK58_06095 ad8212a7b36bc12777f9f291bc645d2a 90 Gene3D G3DSA:4.10.520.10 1 90 6.9E-36 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 AMK58_06095 ad8212a7b36bc12777f9f291bc645d2a 90 SUPERFAMILY SSF47729 1 89 7.8E-32 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 AMK58_06095 ad8212a7b36bc12777f9f291bc645d2a 90 Pfam PF00216 Bacterial DNA-binding protein 1 89 3.1E-34 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMK58_06095 ad8212a7b36bc12777f9f291bc645d2a 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 11-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 AMK58_06095 ad8212a7b36bc12777f9f291bc645d2a 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 4.2E-17 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMK58_06095 ad8212a7b36bc12777f9f291bc645d2a 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 4.2E-17 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMK58_06095 ad8212a7b36bc12777f9f291bc645d2a 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 4.2E-17 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMK58_06095 ad8212a7b36bc12777f9f291bc645d2a 90 SMART SM00411 1 90 7.2E-42 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMK58_22320 b258a93206d9721bd7e57e83826a5a1e 292 Pfam PF01874 ATP:dephospho-CoA triphosphoribosyl transferase 18 281 1.4E-66 T 11-10-2018 IPR002736 Triphosphoribosyl-dephospho-CoA protein GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 AMK58_22320 b258a93206d9721bd7e57e83826a5a1e 292 Gene3D G3DSA:1.10.4200.10 38 287 1.5E-58 T 11-10-2018 AMK58_01240 56a46067e480624f2a728ba6563ff013 657 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 450 630 5.1E-34 T 11-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMK58_01240 56a46067e480624f2a728ba6563ff013 657 Gene3D G3DSA:3.30.70.1230 443 642 3.7E-62 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_01240 56a46067e480624f2a728ba6563ff013 657 SMART SM00044 399 613 9.5E-17 T 11-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMK58_01240 56a46067e480624f2a728ba6563ff013 657 Gene3D G3DSA:3.30.450.20 202 355 1.1E-8 T 11-10-2018 AMK58_01240 56a46067e480624f2a728ba6563ff013 657 SUPERFAMILY SSF55073 448 639 3.92E-58 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_20700 cfc2d33bf82b4a1fd89c3a546a9ad2a9 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 3.3E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_20700 cfc2d33bf82b4a1fd89c3a546a9ad2a9 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 3.3E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_20700 cfc2d33bf82b4a1fd89c3a546a9ad2a9 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 3.3E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_20700 cfc2d33bf82b4a1fd89c3a546a9ad2a9 243 Gene3D G3DSA:3.40.50.720 10 243 3.2E-39 T 11-10-2018 AMK58_20700 cfc2d33bf82b4a1fd89c3a546a9ad2a9 243 Pfam PF00106 short chain dehydrogenase 13 200 1.6E-15 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_20700 cfc2d33bf82b4a1fd89c3a546a9ad2a9 243 SUPERFAMILY SSF51735 13 243 5.25E-42 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_19525 2713feaabf76346636933446da86f58d 443 SMART SM00267 258 432 3.6E-54 T 11-10-2018 IPR000160 GGDEF domain AMK58_19525 2713feaabf76346636933446da86f58d 443 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 267 430 9.3E-44 T 11-10-2018 IPR000160 GGDEF domain AMK58_19525 2713feaabf76346636933446da86f58d 443 Pfam PF00990 Diguanylate cyclase, GGDEF domain 270 427 9.9E-48 T 11-10-2018 IPR000160 GGDEF domain AMK58_19525 2713feaabf76346636933446da86f58d 443 SUPERFAMILY SSF55073 274 433 2.55E-49 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_19525 2713feaabf76346636933446da86f58d 443 Gene3D G3DSA:3.30.450.20 1 88 2.1E-17 T 11-10-2018 AMK58_19525 2713feaabf76346636933446da86f58d 443 Gene3D G3DSA:3.30.70.270 268 435 1.1E-55 T 11-10-2018 AMK58_19525 2713feaabf76346636933446da86f58d 443 Pfam PF02743 Cache domain 4 175 2.5E-17 T 11-10-2018 IPR033479 Double Cache domain 1 AMK58_19525 2713feaabf76346636933446da86f58d 443 Gene3D G3DSA:3.30.450.20 94 180 9.3E-8 T 11-10-2018 AMK58_03995 8440e3ca3521f0a2fedaa573be5c39ae 184 SUPERFAMILY SSF55729 4 139 9.19E-19 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_03995 8440e3ca3521f0a2fedaa573be5c39ae 184 Gene3D G3DSA:3.40.630.30 2 177 4.6E-29 T 11-10-2018 AMK58_03995 8440e3ca3521f0a2fedaa573be5c39ae 184 Pfam PF00583 Acetyltransferase (GNAT) family 48 134 1.0E-7 T 11-10-2018 IPR000182 GNAT domain AMK58_12840 3b232561f3040c872ba56e7b7addc001 148 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 1 134 22.778 T 11-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 AMK58_12840 3b232561f3040c872ba56e7b7addc001 148 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 1 132 5.4E-42 T 11-10-2018 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L AMK58_12840 3b232561f3040c872ba56e7b7addc001 148 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 98 107 9.9E-9 T 11-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 AMK58_12840 3b232561f3040c872ba56e7b7addc001 148 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 89 97 9.9E-9 T 11-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 AMK58_12840 3b232561f3040c872ba56e7b7addc001 148 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 4 18 9.9E-9 T 11-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 AMK58_12840 3b232561f3040c872ba56e7b7addc001 148 SUPERFAMILY SSF81330 11 129 2.48E-34 T 11-10-2018 IPR036019 Gated mechanosensitive channel AMK58_12840 3b232561f3040c872ba56e7b7addc001 148 Gene3D G3DSA:1.10.1200.120 1 136 2.5E-40 T 11-10-2018 IPR036019 Gated mechanosensitive channel AMK58_12840 3b232561f3040c872ba56e7b7addc001 148 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 1 133 5.4E-34 T 11-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 AMK58_10620 c320509d049c04d56bb9dbddaa0b5802 269 Pfam PF00005 ABC transporter 37 176 2.9E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_10620 c320509d049c04d56bb9dbddaa0b5802 269 SMART SM00382 46 227 3.1E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_10620 c320509d049c04d56bb9dbddaa0b5802 269 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_10620 c320509d049c04d56bb9dbddaa0b5802 269 SUPERFAMILY SSF52540 17 247 7.99E-68 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_10620 c320509d049c04d56bb9dbddaa0b5802 269 Gene3D G3DSA:3.40.50.300 15 237 6.7E-65 T 11-10-2018 AMK58_12760 feca9aef8881f25f0e65e14e74179237 609 SUPERFAMILY SSF54631 150 273 1.26E-20 T 11-10-2018 AMK58_12760 feca9aef8881f25f0e65e14e74179237 609 SUPERFAMILY SSF51206 13 134 1.7E-16 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like AMK58_12760 feca9aef8881f25f0e65e14e74179237 609 SMART SM00100 15 130 0.0014 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_12760 feca9aef8881f25f0e65e14e74179237 609 Pfam PF10335 Putative nucleotidyltransferase substrate binding domain 464 605 3.4E-42 T 11-10-2018 IPR018821 Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding AMK58_12760 feca9aef8881f25f0e65e14e74179237 609 Pfam PF00027 Cyclic nucleotide-binding domain 36 114 5.2E-9 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_12760 feca9aef8881f25f0e65e14e74179237 609 Gene3D G3DSA:2.60.120.10 12 142 1.5E-12 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_12760 feca9aef8881f25f0e65e14e74179237 609 SMART SM00116 157 208 0.97 T 11-10-2018 IPR000644 CBS domain AMK58_12760 feca9aef8881f25f0e65e14e74179237 609 SMART SM00116 225 272 0.002 T 11-10-2018 IPR000644 CBS domain AMK58_12760 feca9aef8881f25f0e65e14e74179237 609 Pfam PF03445 Putative nucleotidyltransferase DUF294 299 427 1.6E-39 T 11-10-2018 IPR005105 Protein-PII uridylyltransferase, N-terminal GO:0008773 AMK58_12760 feca9aef8881f25f0e65e14e74179237 609 Gene3D G3DSA:3.10.580.10 145 281 1.1E-21 T 11-10-2018 AMK58_12760 feca9aef8881f25f0e65e14e74179237 609 Pfam PF00571 CBS domain 225 272 2.6E-5 T 11-10-2018 IPR000644 CBS domain AMK58_02090 3bc072c09d013c93e9903a3dbd860923 310 SUPERFAMILY SSF64182 9 304 5.89E-7 T 11-10-2018 IPR038763 DHH phosphoesterase superfamily AMK58_02090 3bc072c09d013c93e9903a3dbd860923 310 PIRSF PIRSF028235 1 310 1.6E-148 T 11-10-2018 IPR016877 Uncharacterised conserved protein UCP028235 AMK58_25205 acf564a74f571c390ee5b7da4e35d484 272 SUPERFAMILY SSF69593 12 216 1.7E-10 T 11-10-2018 AMK58_25205 acf564a74f571c390ee5b7da4e35d484 272 Pfam PF01553 Acyltransferase 47 167 2.2E-6 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMK58_25205 acf564a74f571c390ee5b7da4e35d484 272 SMART SM00563 53 171 1.3E-9 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMK58_26835 d1efe62ca09badddfee36f78e4d910c0 268 PRINTS PR01217 Proline rich extensin signature 98 110 1.9E-10 T 11-10-2018 AMK58_26835 d1efe62ca09badddfee36f78e4d910c0 268 PRINTS PR01217 Proline rich extensin signature 116 137 1.9E-10 T 11-10-2018 AMK58_26835 d1efe62ca09badddfee36f78e4d910c0 268 PRINTS PR01217 Proline rich extensin signature 75 91 1.9E-10 T 11-10-2018 AMK58_26835 d1efe62ca09badddfee36f78e4d910c0 268 PRINTS PR01217 Proline rich extensin signature 137 153 1.9E-10 T 11-10-2018 AMK58_26835 d1efe62ca09badddfee36f78e4d910c0 268 SUPERFAMILY SSF74653 182 268 3.92E-15 T 11-10-2018 AMK58_26835 d1efe62ca09badddfee36f78e4d910c0 268 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 202 267 3.7E-17 T 11-10-2018 IPR006260 TonB/TolA, C-terminal AMK58_26835 d1efe62ca09badddfee36f78e4d910c0 268 Gene3D G3DSA:3.30.1150.10 158 268 2.9E-18 T 11-10-2018 AMK58_26835 d1efe62ca09badddfee36f78e4d910c0 268 Pfam PF13103 TonB C terminal 185 254 8.6E-12 T 11-10-2018 AMK58_00955 b40b26c6d73007f083d7bb1093244168 138 Pfam PF13279 Thioesterase-like superfamily 18 133 1.5E-10 T 11-10-2018 AMK58_00955 b40b26c6d73007f083d7bb1093244168 138 SUPERFAMILY SSF54637 12 137 1.28E-29 T 11-10-2018 IPR029069 HotDog domain superfamily AMK58_00955 b40b26c6d73007f083d7bb1093244168 138 Gene3D G3DSA:3.10.129.10 2 137 3.0E-32 T 11-10-2018 AMK58_11925 a77452ea6e2dad724ef90ef4afefedd2 628 PIRSF PIRSF002741 22 615 1.2E-101 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMK58_11925 a77452ea6e2dad724ef90ef4afefedd2 628 SUPERFAMILY SSF53850 63 610 2.9E-122 T 11-10-2018 AMK58_11925 a77452ea6e2dad724ef90ef4afefedd2 628 Gene3D G3DSA:3.10.105.10 330 589 5.8E-261 T 11-10-2018 AMK58_11925 a77452ea6e2dad724ef90ef4afefedd2 628 Gene3D G3DSA:3.40.190.10 41 610 5.8E-261 T 11-10-2018 AMK58_11925 a77452ea6e2dad724ef90ef4afefedd2 628 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 114 523 9.0E-78 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain AMK58_26165 8aa72ab4e26d8c67b9761ca06e15bd0d 310 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 255 268 - T 11-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AMK58_26165 8aa72ab4e26d8c67b9761ca06e15bd0d 310 Pfam PF00294 pfkB family carbohydrate kinase 7 300 1.4E-51 T 11-10-2018 IPR011611 Carbohydrate kinase PfkB AMK58_26165 8aa72ab4e26d8c67b9761ca06e15bd0d 310 Gene3D G3DSA:3.40.1190.20 4 307 3.1E-79 T 11-10-2018 IPR029056 Ribokinase-like AMK58_26165 8aa72ab4e26d8c67b9761ca06e15bd0d 310 SUPERFAMILY SSF53613 7 302 3.9E-76 T 11-10-2018 IPR029056 Ribokinase-like AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 Gene3D G3DSA:1.25.40.10 592 906 3.0E-55 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 Gene3D G3DSA:1.25.40.10 1185 1480 9.8E-48 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 Gene3D G3DSA:1.25.40.10 1 308 3.1E-62 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 Pfam PF07719 Tetratricopeptide repeat 1383 1412 4.6E-5 T 11-10-2018 IPR013105 Tetratricopeptide repeat 2 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 Pfam PF14559 Tetratricopeptide repeat 622 685 9.6E-7 T 11-10-2018 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 Pfam PF13432 Tetratricopeptide repeat 40 101 3.7E-7 T 11-10-2018 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 Pfam PF13432 Tetratricopeptide repeat 1205 1244 0.0023 T 11-10-2018 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 Pfam PF13432 Tetratricopeptide repeat 1420 1466 2.9E-4 T 11-10-2018 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 Pfam PF13432 Tetratricopeptide repeat 116 170 3.1E-7 T 11-10-2018 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 Pfam PF13432 Tetratricopeptide repeat 752 812 8.0E-4 T 11-10-2018 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 Pfam PF13432 Tetratricopeptide repeat 185 236 0.0011 T 11-10-2018 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 Pfam PF13432 Tetratricopeptide repeat 821 880 0.004 T 11-10-2018 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 SUPERFAMILY SSF53756 322 575 2.13E-10 T 11-10-2018 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 SUPERFAMILY SSF48452 5 206 1.04E-36 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 SUPERFAMILY SSF53756 935 1149 9.42E-10 T 11-10-2018 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 SUPERFAMILY SSF48452 611 906 2.76E-40 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 SUPERFAMILY SSF48452 1207 1476 3.8E-34 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 SMART SM00028 780 813 77.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 SMART SM00028 102 135 0.11 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 SMART SM00028 204 237 0.021 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 SMART SM00028 34 67 1.3 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 SMART SM00028 644 677 9.5 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 SMART SM00028 610 643 21.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 SMART SM00028 170 203 0.0094 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 SMART SM00028 1415 1448 9.2 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 SMART SM00028 68 101 8.2E-5 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 SMART SM00028 1211 1244 1.7 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 SMART SM00028 136 169 0.035 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 SMART SM00028 1381 1414 0.039 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 SMART SM00028 678 711 26.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 SMART SM00028 712 745 22.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 SMART SM00028 746 779 11.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 SMART SM00028 848 881 0.033 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 SMART SM00028 1313 1346 1.9 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 SMART SM00028 238 271 0.012 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 SMART SM00028 1279 1312 17.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 SMART SM00028 814 847 0.0056 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 SMART SM00028 1245 1278 300.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 SMART SM00028 1347 1380 250.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 SUPERFAMILY SSF53756 1502 1743 4.24E-13 T 11-10-2018 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 SUPERFAMILY SSF48452 159 298 1.04E-24 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_18275 62109c24a3afcfe1b4169d1fa5cf70d3 1776 Pfam PF13181 Tetratricopeptide repeat 238 270 0.0042 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_23685 674291c23e17c2ab392bcb4535d943e4 501 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 362 382 - T 11-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AMK58_23685 674291c23e17c2ab392bcb4535d943e4 501 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 6 497 2.1E-210 T 11-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 AMK58_23685 674291c23e17c2ab392bcb4535d943e4 501 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 262 454 2.3E-54 T 11-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AMK58_23685 674291c23e17c2ab392bcb4535d943e4 501 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 7 252 3.8E-78 T 11-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AMK58_23685 674291c23e17c2ab392bcb4535d943e4 501 Gene3D G3DSA:3.30.420.40 254 501 1.8E-85 T 11-10-2018 AMK58_23685 674291c23e17c2ab392bcb4535d943e4 501 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 136 148 - T 11-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AMK58_23685 674291c23e17c2ab392bcb4535d943e4 501 Gene3D G3DSA:3.30.420.40 5 253 5.1E-108 T 11-10-2018 AMK58_23685 674291c23e17c2ab392bcb4535d943e4 501 Hamap MF_00186 Glycerol kinase [glpK]. 4 501 55.035 T 11-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 AMK58_23685 674291c23e17c2ab392bcb4535d943e4 501 SUPERFAMILY SSF53067 6 255 1.81E-95 T 11-10-2018 AMK58_23685 674291c23e17c2ab392bcb4535d943e4 501 PIRSF PIRSF000538 5 500 3.5E-176 T 11-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AMK58_23685 674291c23e17c2ab392bcb4535d943e4 501 SUPERFAMILY SSF53067 255 499 1.73E-79 T 11-10-2018 AMK58_24415 378fe6fbfe2fa042be477d2760c9db95 802 Gene3D G3DSA:3.40.50.970 1 377 5.3E-78 T 11-10-2018 AMK58_24415 378fe6fbfe2fa042be477d2760c9db95 802 Gene3D G3DSA:3.40.50.920 642 797 2.4E-17 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMK58_24415 378fe6fbfe2fa042be477d2760c9db95 802 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 72 223 2.4E-8 T 11-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AMK58_24415 378fe6fbfe2fa042be477d2760c9db95 802 Gene3D G3DSA:3.40.50.970 401 640 9.3E-70 T 11-10-2018 AMK58_24415 378fe6fbfe2fa042be477d2760c9db95 802 SMART SM00861 413 632 8.5E-9 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMK58_24415 378fe6fbfe2fa042be477d2760c9db95 802 SUPERFAMILY SSF52518 397 633 8.1E-57 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMK58_24415 378fe6fbfe2fa042be477d2760c9db95 802 SUPERFAMILY SSF52518 6 361 1.61E-78 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMK58_24415 378fe6fbfe2fa042be477d2760c9db95 802 PIRSF PIRSF000156 3 793 1.6E-62 T 11-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 AMK58_24415 378fe6fbfe2fa042be477d2760c9db95 802 SUPERFAMILY SSF52922 637 790 9.64E-28 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMK58_28370 9eaa96c750dd3266307ea0180d075c13 125 Gene3D G3DSA:1.10.260.40 62 125 6.1E-21 T 11-10-2018 AMK58_28370 9eaa96c750dd3266307ea0180d075c13 125 SUPERFAMILY SSF47413 63 107 1.91E-10 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMK58_28370 9eaa96c750dd3266307ea0180d075c13 125 SMART SM00530 62 116 0.002 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMK58_28370 9eaa96c750dd3266307ea0180d075c13 125 Pfam PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA 62 117 4.8E-8 T 11-10-2018 IPR032758 Antitoxin MqsA/HigA-2 AMK58_26475 8cc6582c7caa40f496e0f6bcfc1d2f56 236 Pfam PF00440 Bacterial regulatory proteins, tetR family 43 89 1.2E-15 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_26475 8cc6582c7caa40f496e0f6bcfc1d2f56 236 Pfam PF14246 AefR-like transcriptional repressor, C-terminal region 180 232 2.7E-14 T 11-10-2018 IPR039536 Transcriptional regulator TetR, C-terminal, Proteobacteria type AMK58_26475 8cc6582c7caa40f496e0f6bcfc1d2f56 236 SUPERFAMILY SSF48498 116 233 7.53E-11 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMK58_26475 8cc6582c7caa40f496e0f6bcfc1d2f56 236 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 43 56 5.6E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_26475 8cc6582c7caa40f496e0f6bcfc1d2f56 236 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 64 87 5.6E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_26475 8cc6582c7caa40f496e0f6bcfc1d2f56 236 Gene3D G3DSA:1.10.357.10 32 236 1.0E-55 T 11-10-2018 AMK58_26475 8cc6582c7caa40f496e0f6bcfc1d2f56 236 SUPERFAMILY SSF46689 33 107 4.16E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_15435 ad3cc100e74f41011159a75048aee320 911 Pfam PF13709 Domain of unknown function (DUF4159) 690 891 5.3E-56 T 11-10-2018 IPR025297 Domain of unknown function DUF4159 AMK58_15435 ad3cc100e74f41011159a75048aee320 911 Gene3D G3DSA:3.40.50.12140 684 893 1.1E-77 T 11-10-2018 AMK58_15435 ad3cc100e74f41011159a75048aee320 911 TIGRFAM TIGR02226 two_anch: N-terminal double-transmembrane domain 8 86 2.9E-18 T 11-10-2018 IPR011933 Double transmembrane domain AMK58_15435 ad3cc100e74f41011159a75048aee320 911 Pfam PF07584 Aerotolerance regulator N-terminal 8 81 6.1E-17 T 11-10-2018 IPR024163 Aerotolerance regulator, N-terminal AMK58_15435 ad3cc100e74f41011159a75048aee320 911 Gene3D G3DSA:3.40.50.880 306 518 8.7E-8 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_15435 ad3cc100e74f41011159a75048aee320 911 SUPERFAMILY SSF52317 354 516 7.1E-9 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_00820 b90cf9ca95de57db7743b055dfc455ed 139 Gene3D G3DSA:1.20.1260.10 1 138 6.2E-55 T 11-10-2018 IPR012347 Ferritin-like AMK58_00820 b90cf9ca95de57db7743b055dfc455ed 139 SUPERFAMILY SSF47240 3 138 2.25E-42 T 11-10-2018 IPR009078 Ferritin-like superfamily AMK58_00820 b90cf9ca95de57db7743b055dfc455ed 139 Pfam PF02915 Rubrerythrin 11 133 1.1E-27 T 11-10-2018 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 AMK58_23950 0711fa12be8c98c9f3ef0b411ae4368d 608 Pfam PF07238 PilZ domain 504 583 2.0E-7 T 11-10-2018 IPR009875 PilZ domain GO:0035438 AMK58_23950 0711fa12be8c98c9f3ef0b411ae4368d 608 SUPERFAMILY SSF58104 222 490 2.88E-54 T 11-10-2018 AMK58_23950 0711fa12be8c98c9f3ef0b411ae4368d 608 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 340 367 2.0E-23 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_23950 0711fa12be8c98c9f3ef0b411ae4368d 608 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 417 446 2.0E-23 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_23950 0711fa12be8c98c9f3ef0b411ae4368d 608 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 369 398 2.0E-23 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_23950 0711fa12be8c98c9f3ef0b411ae4368d 608 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 263 292 2.0E-23 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_23950 0711fa12be8c98c9f3ef0b411ae4368d 608 SMART SM00283 242 496 3.7E-45 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_23950 0711fa12be8c98c9f3ef0b411ae4368d 608 SUPERFAMILY SSF55785 2 54 2.44E-9 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_23950 0711fa12be8c98c9f3ef0b411ae4368d 608 Gene3D G3DSA:3.30.450.20 1 55 1.6E-10 T 11-10-2018 AMK58_23950 0711fa12be8c98c9f3ef0b411ae4368d 608 Gene3D G3DSA:1.10.287.950 207 505 3.8E-53 T 11-10-2018 AMK58_23950 0711fa12be8c98c9f3ef0b411ae4368d 608 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 319 465 8.2E-32 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_23950 0711fa12be8c98c9f3ef0b411ae4368d 608 SUPERFAMILY SSF141371 500 582 9.22E-6 T 11-10-2018 AMK58_23950 0711fa12be8c98c9f3ef0b411ae4368d 608 Pfam PF08447 PAS fold 4 54 8.1E-7 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 AMK58_14620 439d3c00cbc2390777cc6c93d3776bb4 406 PRINTS PR00344 Bacterial sensor protein C-terminal signature 363 381 8.9E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_14620 439d3c00cbc2390777cc6c93d3776bb4 406 PRINTS PR00344 Bacterial sensor protein C-terminal signature 328 342 8.9E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_14620 439d3c00cbc2390777cc6c93d3776bb4 406 PRINTS PR00344 Bacterial sensor protein C-terminal signature 346 356 8.9E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_14620 439d3c00cbc2390777cc6c93d3776bb4 406 PRINTS PR00344 Bacterial sensor protein C-terminal signature 387 400 8.9E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_14620 439d3c00cbc2390777cc6c93d3776bb4 406 SUPERFAMILY SSF55874 222 402 4.45E-42 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_14620 439d3c00cbc2390777cc6c93d3776bb4 406 Gene3D G3DSA:3.30.565.10 231 404 7.0E-44 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_14620 439d3c00cbc2390777cc6c93d3776bb4 406 SMART SM00388 164 232 4.0E-16 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_14620 439d3c00cbc2390777cc6c93d3776bb4 406 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 280 401 9.0E-26 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_14620 439d3c00cbc2390777cc6c93d3776bb4 406 SUPERFAMILY SSF47384 149 233 5.69E-17 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_14620 439d3c00cbc2390777cc6c93d3776bb4 406 Gene3D G3DSA:1.10.287.130 129 230 7.1E-18 T 11-10-2018 AMK58_14620 439d3c00cbc2390777cc6c93d3776bb4 406 SMART SM00387 279 403 5.7E-36 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_14620 439d3c00cbc2390777cc6c93d3776bb4 406 Pfam PF00512 His Kinase A (phospho-acceptor) domain 165 232 1.3E-13 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_05705 a83ee2b0a91d05f3a2ae46c57e6f8b75 218 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 5 217 5.7E-89 T 11-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AMK58_05705 a83ee2b0a91d05f3a2ae46c57e6f8b75 218 Gene3D G3DSA:3.20.20.70 1 216 5.5E-84 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_05705 a83ee2b0a91d05f3a2ae46c57e6f8b75 218 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 135 157 - T 11-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AMK58_05705 a83ee2b0a91d05f3a2ae46c57e6f8b75 218 Pfam PF00834 Ribulose-phosphate 3 epimerase family 5 202 1.3E-84 T 11-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AMK58_05705 a83ee2b0a91d05f3a2ae46c57e6f8b75 218 PIRSF PIRSF001461 1 218 2.7E-93 T 11-10-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AMK58_05705 a83ee2b0a91d05f3a2ae46c57e6f8b75 218 SUPERFAMILY SSF51366 2 216 3.9E-76 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AMK58_05705 a83ee2b0a91d05f3a2ae46c57e6f8b75 218 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 33 47 - T 11-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AMK58_09085 e3607bd0ed84f24518f05c64e81bb0e2 463 SMART SM00283 28 289 3.3E-28 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_09085 e3607bd0ed84f24518f05c64e81bb0e2 463 Gene3D G3DSA:1.10.287.950 4 295 2.5E-48 T 11-10-2018 AMK58_09085 e3607bd0ed84f24518f05c64e81bb0e2 463 SUPERFAMILY SSF58104 12 290 2.88E-50 T 11-10-2018 AMK58_09085 e3607bd0ed84f24518f05c64e81bb0e2 463 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 113 252 2.4E-26 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_26790 6f9ab49f9afef5f97051e12475a1cb61 415 Gene3D G3DSA:3.40.50.1820 115 413 2.9E-21 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_26790 6f9ab49f9afef5f97051e12475a1cb61 415 Pfam PF00561 alpha/beta hydrolase fold 130 391 1.7E-9 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_26790 6f9ab49f9afef5f97051e12475a1cb61 415 SUPERFAMILY SSF53474 119 411 4.2E-30 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_05130 99f88c22b088d1b5c3c4c5676ac04c83 361 Gene3D G3DSA:3.40.50.450 7 336 1.5E-98 T 11-10-2018 AMK58_05130 99f88c22b088d1b5c3c4c5676ac04c83 361 Hamap MF_01976 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [pfp]. 5 360 40.33 T 11-10-2018 IPR012829 Phosphofructokinase, mixed-substrate PFK group III GO:0006096|GO:0047334 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 AMK58_05130 99f88c22b088d1b5c3c4c5676ac04c83 361 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 9 28 1.9E-68 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AMK58_05130 99f88c22b088d1b5c3c4c5676ac04c83 361 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 174 190 1.9E-68 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AMK58_05130 99f88c22b088d1b5c3c4c5676ac04c83 361 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 192 209 1.9E-68 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AMK58_05130 99f88c22b088d1b5c3c4c5676ac04c83 361 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 35 48 1.9E-68 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AMK58_05130 99f88c22b088d1b5c3c4c5676ac04c83 361 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 275 297 1.9E-68 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AMK58_05130 99f88c22b088d1b5c3c4c5676ac04c83 361 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 136 153 1.9E-68 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AMK58_05130 99f88c22b088d1b5c3c4c5676ac04c83 361 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 154 172 1.9E-68 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AMK58_05130 99f88c22b088d1b5c3c4c5676ac04c83 361 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 108 124 1.9E-68 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AMK58_05130 99f88c22b088d1b5c3c4c5676ac04c83 361 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 228 240 1.9E-68 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AMK58_05130 99f88c22b088d1b5c3c4c5676ac04c83 361 Pfam PF00365 Phosphofructokinase 6 311 9.9E-97 T 11-10-2018 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AMK58_05130 99f88c22b088d1b5c3c4c5676ac04c83 361 Gene3D G3DSA:3.40.50.460 156 291 1.5E-98 T 11-10-2018 AMK58_05130 99f88c22b088d1b5c3c4c5676ac04c83 361 PIRSF PIRSF000532 3 361 2.1E-120 T 11-10-2018 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type GO:0005524|GO:0006002|GO:0006096|GO:0008443 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 AMK58_05130 99f88c22b088d1b5c3c4c5676ac04c83 361 SUPERFAMILY SSF53784 4 352 2.49E-102 T 11-10-2018 IPR035966 Phosphofructokinase superfamily GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AMK58_28555 fef6d49d6b2456b8212c3f20a6181709 392 Gene3D G3DSA:3.20.20.70 32 249 1.6E-45 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_28555 fef6d49d6b2456b8212c3f20a6181709 392 PIRSF PIRSF037420 21 390 1.7E-122 T 11-10-2018 IPR017200 Coenzyme PQQ synthesis protein E AMK58_28555 fef6d49d6b2456b8212c3f20a6181709 392 TIGRFAM TIGR04051 rSAM_NirJ: heme d1 biosynthesis radical SAM protein NirJ 30 382 6.1E-173 T 11-10-2018 IPR023992 Heme D1 biosynthesis, radical SAM protein NirJ AMK58_28555 fef6d49d6b2456b8212c3f20a6181709 392 Pfam PF13353 4Fe-4S single cluster domain 32 142 3.3E-8 T 11-10-2018 AMK58_28555 fef6d49d6b2456b8212c3f20a6181709 392 Pfam PF04055 Radical SAM superfamily 37 191 3.3E-26 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMK58_28555 fef6d49d6b2456b8212c3f20a6181709 392 SUPERFAMILY SSF102114 31 355 6.02E-65 T 11-10-2018 AMK58_23135 06f81290cc30a068ac6ec3ed9c3c6a69 1049 SUPERFAMILY SSF82714 185 265 2.75E-14 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_23135 06f81290cc30a068ac6ec3ed9c3c6a69 1049 SUPERFAMILY SSF82693 38 127 1.26E-15 T 11-10-2018 AMK58_23135 06f81290cc30a068ac6ec3ed9c3c6a69 1049 Gene3D G3DSA:3.30.2090.10 181 272 6.9E-231 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_23135 06f81290cc30a068ac6ec3ed9c3c6a69 1049 PRINTS PR00702 Acriflavin resistance protein family signature 333 356 1.3E-40 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_23135 06f81290cc30a068ac6ec3ed9c3c6a69 1049 PRINTS PR00702 Acriflavin resistance protein family signature 388 412 1.3E-40 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_23135 06f81290cc30a068ac6ec3ed9c3c6a69 1049 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 1.3E-40 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_23135 06f81290cc30a068ac6ec3ed9c3c6a69 1049 PRINTS PR00702 Acriflavin resistance protein family signature 360 381 1.3E-40 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_23135 06f81290cc30a068ac6ec3ed9c3c6a69 1049 PRINTS PR00702 Acriflavin resistance protein family signature 536 553 1.3E-40 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_23135 06f81290cc30a068ac6ec3ed9c3c6a69 1049 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 1.3E-40 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_23135 06f81290cc30a068ac6ec3ed9c3c6a69 1049 PRINTS PR00702 Acriflavin resistance protein family signature 441 464 1.3E-40 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_23135 06f81290cc30a068ac6ec3ed9c3c6a69 1049 PRINTS PR00702 Acriflavin resistance protein family signature 466 489 1.3E-40 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_23135 06f81290cc30a068ac6ec3ed9c3c6a69 1049 Gene3D G3DSA:3.30.70.1320 131 327 6.9E-231 T 11-10-2018 AMK58_23135 06f81290cc30a068ac6ec3ed9c3c6a69 1049 Gene3D G3DSA:3.30.70.1440 652 853 6.9E-231 T 11-10-2018 AMK58_23135 06f81290cc30a068ac6ec3ed9c3c6a69 1049 SUPERFAMILY SSF82714 705 791 6.54E-11 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_23135 06f81290cc30a068ac6ec3ed9c3c6a69 1049 Gene3D G3DSA:3.30.70.1430 38 802 6.9E-231 T 11-10-2018 AMK58_23135 06f81290cc30a068ac6ec3ed9c3c6a69 1049 SUPERFAMILY SSF82866 790 1030 8.5E-37 T 11-10-2018 AMK58_23135 06f81290cc30a068ac6ec3ed9c3c6a69 1049 Pfam PF00873 AcrB/AcrD/AcrF family 1 1027 1.4E-180 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMK58_23135 06f81290cc30a068ac6ec3ed9c3c6a69 1049 Gene3D G3DSA:1.20.1640.10 8 506 6.9E-231 T 11-10-2018 AMK58_23135 06f81290cc30a068ac6ec3ed9c3c6a69 1049 Gene3D G3DSA:3.30.2090.10 706 794 6.9E-231 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMK58_23135 06f81290cc30a068ac6ec3ed9c3c6a69 1049 SUPERFAMILY SSF82866 291 491 1.23E-34 T 11-10-2018 AMK58_23135 06f81290cc30a068ac6ec3ed9c3c6a69 1049 Gene3D G3DSA:1.20.1640.10 507 1026 6.9E-231 T 11-10-2018 AMK58_23135 06f81290cc30a068ac6ec3ed9c3c6a69 1049 Gene3D G3DSA:3.30.70.1430 553 651 6.9E-231 T 11-10-2018 AMK58_23135 06f81290cc30a068ac6ec3ed9c3c6a69 1049 SUPERFAMILY SSF82693 151 310 3.09E-10 T 11-10-2018 AMK58_14945 823d3d95bf9ce0f279fb3671d60889f0 1136 Pfam PF02514 CobN/Magnesium Chelatase 704 1122 5.0E-161 T 11-10-2018 IPR003672 CobN/magnesium chelatase GO:0009058 AMK58_14945 823d3d95bf9ce0f279fb3671d60889f0 1136 Pfam PF02514 CobN/Magnesium Chelatase 142 693 3.1E-152 T 11-10-2018 IPR003672 CobN/magnesium chelatase GO:0009058 AMK58_23920 8c069cdf17dc9f63faed95b4c739a699 370 Gene3D G3DSA:3.40.50.2300 30 345 2.0E-99 T 11-10-2018 AMK58_23920 8c069cdf17dc9f63faed95b4c739a699 370 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 27 43 5.1E-5 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMK58_23920 8c069cdf17dc9f63faed95b4c739a699 370 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 252 270 5.1E-5 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMK58_23920 8c069cdf17dc9f63faed95b4c739a699 370 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 49 65 5.1E-5 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMK58_23920 8c069cdf17dc9f63faed95b4c739a699 370 SUPERFAMILY SSF53822 25 368 1.15E-87 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMK58_23920 8c069cdf17dc9f63faed95b4c739a699 370 Pfam PF13458 Periplasmic binding protein 26 363 9.9E-61 T 11-10-2018 IPR028081 Leucine-binding protein domain AMK58_23920 8c069cdf17dc9f63faed95b4c739a699 370 Gene3D G3DSA:3.40.50.2300 142 276 2.0E-99 T 11-10-2018 AMK58_14985 c2dee5a93abc632577f97d66b37389cb 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 5.6E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_14985 c2dee5a93abc632577f97d66b37389cb 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 5.6E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_14985 c2dee5a93abc632577f97d66b37389cb 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 5.6E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_14985 c2dee5a93abc632577f97d66b37389cb 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 5.6E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_14985 c2dee5a93abc632577f97d66b37389cb 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 5.6E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_14985 c2dee5a93abc632577f97d66b37389cb 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 5.6E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_14985 c2dee5a93abc632577f97d66b37389cb 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 6.1E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_14985 c2dee5a93abc632577f97d66b37389cb 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 6.1E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_14985 c2dee5a93abc632577f97d66b37389cb 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 6.1E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_14985 c2dee5a93abc632577f97d66b37389cb 261 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMK58_14985 c2dee5a93abc632577f97d66b37389cb 261 TIGRFAM TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase 5 261 9.0E-107 T 11-10-2018 IPR011294 3-hydroxybutyrate dehydrogenase GO:0003858|GO:0055114 AMK58_14985 c2dee5a93abc632577f97d66b37389cb 261 Gene3D G3DSA:3.40.50.720 1 261 3.1E-80 T 11-10-2018 AMK58_14985 c2dee5a93abc632577f97d66b37389cb 261 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 259 3.1E-58 T 11-10-2018 AMK58_14985 c2dee5a93abc632577f97d66b37389cb 261 SUPERFAMILY SSF51735 5 260 3.12E-78 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_11295 7bd26e4622598a7a801cdf99044959a5 151 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 55 92 - T 11-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 AMK58_11295 7bd26e4622598a7a801cdf99044959a5 151 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 8 151 43.495 T 11-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 AMK58_11295 7bd26e4622598a7a801cdf99044959a5 151 Pfam PF14437 MafB19-like deaminase 11 113 5.4E-22 T 11-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 AMK58_11295 7bd26e4622598a7a801cdf99044959a5 151 Gene3D G3DSA:3.40.140.10 5 146 2.1E-48 T 11-10-2018 AMK58_11295 7bd26e4622598a7a801cdf99044959a5 151 SUPERFAMILY SSF53927 7 150 9.21E-45 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 AMK58_26060 6900586cc8e7d727d919dd29f7bb35ad 327 SUPERFAMILY SSF48179 199 321 2.89E-29 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMK58_26060 6900586cc8e7d727d919dd29f7bb35ad 327 SUPERFAMILY SSF51735 1 187 3.04E-15 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_26060 6900586cc8e7d727d919dd29f7bb35ad 327 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 105 4.3E-21 T 11-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain AMK58_26060 6900586cc8e7d727d919dd29f7bb35ad 327 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 199 320 5.0E-29 T 11-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain AMK58_26060 6900586cc8e7d727d919dd29f7bb35ad 327 Gene3D G3DSA:1.10.1040.10 199 326 1.1E-38 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMK58_26060 6900586cc8e7d727d919dd29f7bb35ad 327 Gene3D G3DSA:3.40.50.720 1 197 8.4E-58 T 11-10-2018 AMK58_00605 3f6490d75bbff8aacc6129daaa8d417f 180 PIRSF PIRSF032162 6 175 2.2E-49 T 11-10-2018 IPR016990 Uncharacterised conserved protein UCP032162, transmembrane AMK58_00605 3f6490d75bbff8aacc6129daaa8d417f 180 Pfam PF10003 Integral membrane protein (DUF2244) 28 166 4.4E-52 T 11-10-2018 IPR019253 Protein of unknown function DUF2244, transmembrane AMK58_07135 1820bac059a7f75d12e09d20ea6b8a6e 385 Gene3D G3DSA:3.40.50.2000 183 348 2.4E-14 T 11-10-2018 AMK58_07135 1820bac059a7f75d12e09d20ea6b8a6e 385 SUPERFAMILY SSF53756 2 362 4.93E-36 T 11-10-2018 AMK58_07135 1820bac059a7f75d12e09d20ea6b8a6e 385 Pfam PF13579 Glycosyl transferase 4-like domain 1 163 2.8E-12 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AMK58_07135 1820bac059a7f75d12e09d20ea6b8a6e 385 Gene3D G3DSA:3.40.50.2000 1 182 3.5E-9 T 11-10-2018 AMK58_11260 066de5b5c3cb0c7cfaab18e6316b4d20 238 Gene3D G3DSA:3.40.190.10 104 198 4.4E-33 T 11-10-2018 AMK58_11260 066de5b5c3cb0c7cfaab18e6316b4d20 238 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 22 236 6.3E-30 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMK58_11260 066de5b5c3cb0c7cfaab18e6316b4d20 238 SUPERFAMILY SSF53850 22 236 6.79E-38 T 11-10-2018 AMK58_11260 066de5b5c3cb0c7cfaab18e6316b4d20 238 SMART SM00062 20 238 6.1E-5 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMK58_11260 066de5b5c3cb0c7cfaab18e6316b4d20 238 Gene3D G3DSA:3.40.190.10 23 236 4.4E-33 T 11-10-2018 AMK58_20055 16e4311afb1d6756f76252c8b5355085 741 SMART SM00487 243 409 0.0058 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMK58_20055 16e4311afb1d6756f76252c8b5355085 741 Pfam PF00271 Helicase conserved C-terminal domain 414 519 2.5E-10 T 11-10-2018 IPR001650 Helicase, C-terminal AMK58_20055 16e4311afb1d6756f76252c8b5355085 741 Gene3D G3DSA:3.40.50.300 399 545 2.1E-112 T 11-10-2018 AMK58_20055 16e4311afb1d6756f76252c8b5355085 741 SMART SM00490 430 519 2.7E-19 T 11-10-2018 IPR001650 Helicase, C-terminal AMK58_20055 16e4311afb1d6756f76252c8b5355085 741 SUPERFAMILY SSF52540 255 524 1.1E-32 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_20055 16e4311afb1d6756f76252c8b5355085 741 Gene3D G3DSA:3.40.50.300 244 398 2.1E-112 T 11-10-2018 AMK58_20055 16e4311afb1d6756f76252c8b5355085 741 Pfam PF12513 Mitochondrial degradasome RNA helicase subunit C terminal 667 710 1.0E-8 T 11-10-2018 IPR022192 Mitochondrial degradasome RNA helicase subunit, C-terminal domain GO:0016817 AMK58_20055 16e4311afb1d6756f76252c8b5355085 741 Gene3D G3DSA:1.20.272.40 239 617 2.1E-112 T 11-10-2018 AMK58_00170 759ddf5fedb9891f68efa10533499071 253 Pfam PF07722 Peptidase C26 5 224 5.7E-72 T 11-10-2018 IPR011697 Peptidase C26 GO:0016787 Reactome: R-HSA-6798695 AMK58_00170 759ddf5fedb9891f68efa10533499071 253 Gene3D G3DSA:3.40.50.880 2 252 6.1E-66 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_00170 759ddf5fedb9891f68efa10533499071 253 SUPERFAMILY SSF52317 4 240 1.55E-40 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_01305 eea089fe92442cccca4b569fbe86a7e4 438 SUPERFAMILY SSF53448 14 191 2.25E-13 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_01305 eea089fe92442cccca4b569fbe86a7e4 438 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 269 402 2.0E-23 T 11-10-2018 IPR006342 Methyltransferase FkbM AMK58_01305 eea089fe92442cccca4b569fbe86a7e4 438 SUPERFAMILY SSF53335 229 420 5.41E-41 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_01305 eea089fe92442cccca4b569fbe86a7e4 438 Gene3D G3DSA:3.90.550.10 14 206 7.1E-10 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_01305 eea089fe92442cccca4b569fbe86a7e4 438 Gene3D G3DSA:3.40.50.150 255 413 2.6E-30 T 11-10-2018 AMK58_01305 eea089fe92442cccca4b569fbe86a7e4 438 Pfam PF05050 Methyltransferase FkbM domain 271 406 3.2E-13 T 11-10-2018 IPR006342 Methyltransferase FkbM AMK58_10185 e5cb39a73e93661a5f13c4db36012726 670 Gene3D G3DSA:3.30.750.140 519 636 3.8E-11 T 11-10-2018 IPR038610 FliK-like, C-terminal domain superfamily AMK58_10185 e5cb39a73e93661a5f13c4db36012726 670 Pfam PF02120 Flagellar hook-length control protein FliK 542 625 3.2E-16 T 11-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal AMK58_28505 4e83e8b93467e0dcd586f05200fe1529 364 TIGRFAM TIGR02484 CitB: CitB domain protein 10 361 5.4E-130 T 11-10-2018 IPR012830 Citrate utilization protein B AMK58_28505 4e83e8b93467e0dcd586f05200fe1529 364 SUPERFAMILY SSF103501 212 356 5.49E-23 T 11-10-2018 IPR036197 NarG-like superfamily AMK58_28505 4e83e8b93467e0dcd586f05200fe1529 364 SUPERFAMILY SSF54862 16 67 9.63E-5 T 11-10-2018 AMK58_05235 bd47b77426e4609b9885224b0e592456 411 Pfam PF04932 O-Antigen ligase 204 345 3.2E-17 T 11-10-2018 IPR007016 O-antigen ligase-related AMK58_26935 09c8c3192b81b7af4f65a2448000acac 268 SUPERFAMILY SSF56317 1 258 2.35E-67 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMK58_26935 09c8c3192b81b7af4f65a2448000acac 268 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 142 162 - T 11-10-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site AMK58_26935 09c8c3192b81b7af4f65a2448000acac 268 Gene3D G3DSA:3.60.110.10 1 259 1.3E-78 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMK58_26935 09c8c3192b81b7af4f65a2448000acac 268 Pfam PF00795 Carbon-nitrogen hydrolase 6 241 1.6E-47 T 11-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 AMK58_24310 f2ca14097127e33a8c384f28e869b4bb 295 Gene3D G3DSA:1.10.3720.10 78 284 4.7E-23 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_24310 f2ca14097127e33a8c384f28e869b4bb 295 SUPERFAMILY SSF161098 82 269 3.92E-27 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_24310 f2ca14097127e33a8c384f28e869b4bb 295 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 18 64 7.9E-8 T 11-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AMK58_24310 f2ca14097127e33a8c384f28e869b4bb 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 105 289 1.1E-26 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_25995 3719a69b830bcbfa42dab2a9930f4c71 234 Pfam PF00005 ABC transporter 17 162 3.7E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_25995 3719a69b830bcbfa42dab2a9930f4c71 234 Gene3D G3DSA:3.40.50.300 1 234 2.3E-69 T 11-10-2018 AMK58_25995 3719a69b830bcbfa42dab2a9930f4c71 234 PIRSF PIRSF039137 1 234 2.1E-104 T 11-10-2018 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 AMK58_25995 3719a69b830bcbfa42dab2a9930f4c71 234 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_25995 3719a69b830bcbfa42dab2a9930f4c71 234 SUPERFAMILY SSF52540 2 232 2.77E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_25995 3719a69b830bcbfa42dab2a9930f4c71 234 SMART SM00382 26 217 2.0E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_22990 e0012caeb3638574a81cccd808f3ce42 566 Pfam PF13229 Right handed beta helix region 304 446 2.2E-10 T 11-10-2018 IPR039448 Right handed beta helix domain AMK58_22990 e0012caeb3638574a81cccd808f3ce42 566 SMART SM00710 337 359 1.1 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_22990 e0012caeb3638574a81cccd808f3ce42 566 SMART SM00710 361 383 380.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_22990 e0012caeb3638574a81cccd808f3ce42 566 SMART SM00710 414 443 8300.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_22990 e0012caeb3638574a81cccd808f3ce42 566 SMART SM00710 469 491 47.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_22990 e0012caeb3638574a81cccd808f3ce42 566 SMART SM00710 496 517 9500.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_22990 e0012caeb3638574a81cccd808f3ce42 566 SMART SM00710 313 335 1200.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_22990 e0012caeb3638574a81cccd808f3ce42 566 SMART SM00710 386 409 3100.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_22990 e0012caeb3638574a81cccd808f3ce42 566 SMART SM00710 447 468 1000.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_22990 e0012caeb3638574a81cccd808f3ce42 566 SMART SM00710 522 545 2200.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_22990 e0012caeb3638574a81cccd808f3ce42 566 SUPERFAMILY SSF51126 222 541 3.96E-35 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor AMK58_22990 e0012caeb3638574a81cccd808f3ce42 566 Pfam PF16841 Ca-dependent carbohydrate-binding module xylan-binding 72 163 5.7E-31 T 11-10-2018 IPR031768 Carbohydrate binding module, xylan-binding domain MetaCyc: PWY-6717|MetaCyc: PWY-6784 AMK58_22990 e0012caeb3638574a81cccd808f3ce42 566 Gene3D G3DSA:2.160.20.10 223 565 3.1E-31 T 11-10-2018 IPR012334 Pectin lyase fold AMK58_22990 e0012caeb3638574a81cccd808f3ce42 566 Gene3D G3DSA:2.60.60.40 69 185 1.8E-9 T 11-10-2018 AMK58_27975 516b265f7fa8045ae01fe6efbc163d2f 85 Pfam PF00589 Phage integrase family 10 65 3.0E-7 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMK58_27975 516b265f7fa8045ae01fe6efbc163d2f 85 SUPERFAMILY SSF56349 1 74 3.53E-14 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMK58_27975 516b265f7fa8045ae01fe6efbc163d2f 85 Gene3D G3DSA:1.10.443.10 1 67 5.0E-17 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMK58_02865 2422ccd5e97624f210a742221bffdf81 652 Pfam PF13245 AAA domain 28 253 1.2E-12 T 11-10-2018 AMK58_02865 2422ccd5e97624f210a742221bffdf81 652 Gene3D G3DSA:3.40.50.300 168 294 1.5E-7 T 11-10-2018 AMK58_02865 2422ccd5e97624f210a742221bffdf81 652 Gene3D G3DSA:3.40.50.300 23 166 3.2E-14 T 11-10-2018 AMK58_02865 2422ccd5e97624f210a742221bffdf81 652 SUPERFAMILY SSF52540 29 629 3.72E-41 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_02865 2422ccd5e97624f210a742221bffdf81 652 Gene3D G3DSA:3.40.50.300 539 640 9.5E-6 T 11-10-2018 AMK58_24975 bd6cdc7e1f2bb276623a52be297cecf8 131 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 123 8.3E-11 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMK58_24975 bd6cdc7e1f2bb276623a52be297cecf8 131 Gene3D G3DSA:3.10.180.10 2 128 7.3E-29 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMK58_24975 bd6cdc7e1f2bb276623a52be297cecf8 131 SUPERFAMILY SSF54593 5 127 2.28E-27 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMK58_04980 3e29644758febb34d83d68f223742265 3467 Gene3D G3DSA:2.150.10.10 3350 3463 3.3E-21 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_04980 3e29644758febb34d83d68f223742265 3467 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 3379 3397 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_04980 3e29644758febb34d83d68f223742265 3467 PRINTS PR00313 NodO calcium binding signature 3374 3383 4.9E-9 T 11-10-2018 AMK58_04980 3e29644758febb34d83d68f223742265 3467 PRINTS PR00313 NodO calcium binding signature 3290 3301 4.9E-9 T 11-10-2018 AMK58_04980 3e29644758febb34d83d68f223742265 3467 PRINTS PR00313 NodO calcium binding signature 3347 3355 4.9E-9 T 11-10-2018 AMK58_04980 3e29644758febb34d83d68f223742265 3467 PRINTS PR00313 NodO calcium binding signature 3365 3373 4.9E-9 T 11-10-2018 AMK58_04980 3e29644758febb34d83d68f223742265 3467 Gene3D G3DSA:2.150.10.10 3225 3262 6.9E-7 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_04980 3e29644758febb34d83d68f223742265 3467 Gene3D G3DSA:2.150.10.10 3175 3224 3.1E-5 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_04980 3e29644758febb34d83d68f223742265 3467 TIGRFAM TIGR02059 swm_rep_I: cyanobacterial long protein repeat 308 389 3.7E-5 T 11-10-2018 IPR011801 Cyanobacterial long protein repeat AMK58_04980 3e29644758febb34d83d68f223742265 3467 TIGRFAM TIGR02059 swm_rep_I: cyanobacterial long protein repeat 1445 1518 2.4E-16 T 11-10-2018 IPR011801 Cyanobacterial long protein repeat AMK58_04980 3e29644758febb34d83d68f223742265 3467 TIGRFAM TIGR02059 swm_rep_I: cyanobacterial long protein repeat 1047 1120 1.1E-16 T 11-10-2018 IPR011801 Cyanobacterial long protein repeat AMK58_04980 3e29644758febb34d83d68f223742265 3467 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 3293 3309 0.0022 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_04980 3e29644758febb34d83d68f223742265 3467 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 3204 3219 0.041 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_04980 3e29644758febb34d83d68f223742265 3467 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 3383 3399 0.17 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_04980 3e29644758febb34d83d68f223742265 3467 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 3274 3291 0.04 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_04980 3e29644758febb34d83d68f223742265 3467 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 3223 3237 0.18 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_04980 3e29644758febb34d83d68f223742265 3467 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 3310 3326 0.17 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_04980 3e29644758febb34d83d68f223742265 3467 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 3347 3363 0.0035 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_04980 3e29644758febb34d83d68f223742265 3467 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 3239 3254 0.0021 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_04980 3e29644758febb34d83d68f223742265 3467 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 3257 3273 9.1 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_04980 3e29644758febb34d83d68f223742265 3467 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 3364 3381 0.0019 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_04980 3e29644758febb34d83d68f223742265 3467 SUPERFAMILY SSF51120 3223 3342 2.18E-25 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_04980 3e29644758febb34d83d68f223742265 3467 Gene3D G3DSA:2.60.40.10 2189 2288 2.0E-13 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_04980 3e29644758febb34d83d68f223742265 3467 Gene3D G3DSA:2.60.40.10 2289 2383 8.0E-13 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_04980 3e29644758febb34d83d68f223742265 3467 Gene3D G3DSA:2.60.40.10 2384 2482 8.8E-14 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_04980 3e29644758febb34d83d68f223742265 3467 Gene3D G3DSA:2.60.40.10 2572 2674 4.0E-13 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_04980 3e29644758febb34d83d68f223742265 3467 Pfam PF13753 Putative flagellar system-associated repeat 1040 1118 1.3E-24 T 11-10-2018 IPR028059 Putative flagellar system-associated repeat AMK58_04980 3e29644758febb34d83d68f223742265 3467 Pfam PF13753 Putative flagellar system-associated repeat 1439 1516 1.4E-25 T 11-10-2018 IPR028059 Putative flagellar system-associated repeat AMK58_04980 3e29644758febb34d83d68f223742265 3467 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 3361 3379 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_04980 3e29644758febb34d83d68f223742265 3467 Gene3D G3DSA:2.60.40.10 2772 2859 1.8E-14 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_04980 3e29644758febb34d83d68f223742265 3467 Gene3D G3DSA:2.60.40.10 2676 2762 1.7E-12 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_04980 3e29644758febb34d83d68f223742265 3467 Gene3D G3DSA:2.60.40.10 2484 2570 1.5E-13 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_04980 3e29644758febb34d83d68f223742265 3467 Gene3D G3DSA:2.60.40.10 2101 2188 1.0E-10 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_04980 3e29644758febb34d83d68f223742265 3467 SUPERFAMILY SSF51120 3302 3457 1.83E-30 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_04980 3e29644758febb34d83d68f223742265 3467 Gene3D G3DSA:2.150.10.10 3263 3305 1.9E-11 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_04980 3e29644758febb34d83d68f223742265 3467 Gene3D G3DSA:2.150.10.10 3306 3349 3.1E-7 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_04980 3e29644758febb34d83d68f223742265 3467 Pfam PF14252 Domain of unknown function (DUF4347) 26 183 1.1E-43 T 11-10-2018 IPR025592 Domain of unknown function DUF4347 AMK58_10575 a1badf4d89fd2c475192f0730346ef79 231 Pfam PF00005 ABC transporter 17 160 3.8E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_10575 a1badf4d89fd2c475192f0730346ef79 231 SMART SM00382 26 210 4.9E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_10575 a1badf4d89fd2c475192f0730346ef79 231 Gene3D G3DSA:3.40.50.300 1 230 3.7E-58 T 11-10-2018 AMK58_10575 a1badf4d89fd2c475192f0730346ef79 231 SUPERFAMILY SSF52540 2 221 8.64E-57 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_10575 a1badf4d89fd2c475192f0730346ef79 231 TIGRFAM TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE 2 231 8.0E-104 T 11-10-2018 IPR017780 ABC transporter, urea, ATP-binding protein, UrtE AMK58_18105 d2d57450c95586d239b8abde15ea7ebc 217 Pfam PF01618 MotA/TolQ/ExbB proton channel family 87 169 2.7E-5 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel AMK58_27765 92578c6806a9dc2c899e327318db0b8a 478 Gene3D G3DSA:1.10.4100.10 42 438 1.9E-107 T 11-10-2018 AMK58_27765 92578c6806a9dc2c899e327318db0b8a 478 Gene3D G3DSA:3.30.1330.120 289 422 1.9E-107 T 11-10-2018 AMK58_27765 92578c6806a9dc2c899e327318db0b8a 478 SUPERFAMILY SSF103378 19 464 5.36E-112 T 11-10-2018 IPR036148 MmgE/PrpD superfamily GO:0016829 AMK58_27765 92578c6806a9dc2c899e327318db0b8a 478 Pfam PF03972 MmgE/PrpD family 24 460 4.3E-117 T 11-10-2018 IPR005656 MmgE/PrpD GO:0016829 AMK58_00255 bd2ac268341f1b8f3c952c7121c351a0 390 Gene3D G3DSA:1.10.3720.10 173 385 1.8E-19 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_00255 bd2ac268341f1b8f3c952c7121c351a0 390 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 39 91 9.0E-11 T 11-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AMK58_00255 bd2ac268341f1b8f3c952c7121c351a0 390 SUPERFAMILY SSF161098 178 375 3.92E-23 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_00255 bd2ac268341f1b8f3c952c7121c351a0 390 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 201 388 4.0E-28 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_00265 5c9539b0f9431eecaa21e29ad57bb85f 291 Gene3D G3DSA:3.60.15.10 21 291 7.7E-48 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMK58_00265 5c9539b0f9431eecaa21e29ad57bb85f 291 SUPERFAMILY SSF56281 22 291 3.01E-51 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMK58_00265 5c9539b0f9431eecaa21e29ad57bb85f 291 SMART SM00849 44 234 3.3E-8 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMK58_00265 5c9539b0f9431eecaa21e29ad57bb85f 291 Pfam PF12706 Beta-lactamase superfamily domain 58 257 1.0E-28 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMK58_12240 fa08e0a6bb4a106a4e2fd9b66d8f65f4 454 Gene3D G3DSA:2.160.20.80 138 271 6.6E-26 T 11-10-2018 AMK58_12240 fa08e0a6bb4a106a4e2fd9b66d8f65f4 454 SUPERFAMILY SSF141571 39 131 1.7E-22 T 11-10-2018 AMK58_12240 fa08e0a6bb4a106a4e2fd9b66d8f65f4 454 SUPERFAMILY SSF141571 151 255 1.01E-24 T 11-10-2018 AMK58_12240 fa08e0a6bb4a106a4e2fd9b66d8f65f4 454 Gene3D G3DSA:2.160.20.80 4 137 2.9E-25 T 11-10-2018 AMK58_12240 fa08e0a6bb4a106a4e2fd9b66d8f65f4 454 Pfam PF00805 Pentapeptide repeats (8 copies) 40 74 7.7E-6 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_12240 fa08e0a6bb4a106a4e2fd9b66d8f65f4 454 Pfam PF00805 Pentapeptide repeats (8 copies) 333 365 3.0E-9 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_12240 fa08e0a6bb4a106a4e2fd9b66d8f65f4 454 Pfam PF00805 Pentapeptide repeats (8 copies) 86 125 1.0E-9 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_12240 fa08e0a6bb4a106a4e2fd9b66d8f65f4 454 Pfam PF00805 Pentapeptide repeats (8 copies) 415 445 9.7E-9 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_12240 fa08e0a6bb4a106a4e2fd9b66d8f65f4 454 Pfam PF00805 Pentapeptide repeats (8 copies) 185 223 2.4E-13 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_12240 fa08e0a6bb4a106a4e2fd9b66d8f65f4 454 Pfam PF00805 Pentapeptide repeats (8 copies) 228 254 7.6E-4 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_12240 fa08e0a6bb4a106a4e2fd9b66d8f65f4 454 Pfam PF00805 Pentapeptide repeats (8 copies) 379 414 1.6E-9 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_12240 fa08e0a6bb4a106a4e2fd9b66d8f65f4 454 Gene3D G3DSA:2.160.20.100 279 374 2.6E-19 T 11-10-2018 AMK58_12240 fa08e0a6bb4a106a4e2fd9b66d8f65f4 454 Gene3D G3DSA:2.160.20.100 375 454 3.4E-20 T 11-10-2018 AMK58_12240 fa08e0a6bb4a106a4e2fd9b66d8f65f4 454 SUPERFAMILY SSF141571 286 445 5.59E-37 T 11-10-2018 AMK58_25705 04a735557ea000c262b9ade9ab86485e 251 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 119 130 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMK58_25705 04a735557ea000c262b9ade9ab86485e 251 Gene3D G3DSA:3.30.70.20 8 247 1.4E-63 T 11-10-2018 AMK58_25705 04a735557ea000c262b9ade9ab86485e 251 SUPERFAMILY SSF54862 13 218 1.67E-64 T 11-10-2018 AMK58_25705 04a735557ea000c262b9ade9ab86485e 251 Pfam PF12800 4Fe-4S binding domain 21 35 0.1 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMK58_25705 04a735557ea000c262b9ade9ab86485e 251 Pfam PF13247 4Fe-4S dicluster domain 81 180 1.8E-24 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMK58_25590 9f260c28a5c08b56265a8cd53ac30c23 302 SUPERFAMILY SSF103481 56 149 1.07E-8 T 11-10-2018 AMK58_25590 9f260c28a5c08b56265a8cd53ac30c23 302 Pfam PF00892 EamA-like transporter family 156 284 6.9E-11 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_25590 9f260c28a5c08b56265a8cd53ac30c23 302 Pfam PF00892 EamA-like transporter family 16 147 2.0E-8 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_25590 9f260c28a5c08b56265a8cd53ac30c23 302 SUPERFAMILY SSF103481 193 289 3.92E-14 T 11-10-2018 AMK58_22170 f3e261b32d2b93d7bf9b58ed2ea456e2 260 Gene3D G3DSA:3.40.50.300 2 242 2.6E-61 T 11-10-2018 AMK58_22170 f3e261b32d2b93d7bf9b58ed2ea456e2 260 SUPERFAMILY SSF52540 4 242 9.61E-72 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_22170 f3e261b32d2b93d7bf9b58ed2ea456e2 260 Pfam PF00005 ABC transporter 26 165 8.2E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_22170 f3e261b32d2b93d7bf9b58ed2ea456e2 260 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_22170 f3e261b32d2b93d7bf9b58ed2ea456e2 260 SMART SM00382 34 227 2.3E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_09680 9f0ce52e06682463f1b91ebead3ee256 583 Gene3D G3DSA:3.40.1750.10 162 468 1.2E-138 T 11-10-2018 AMK58_09680 9f0ce52e06682463f1b91ebead3ee256 583 PIRSF PIRSF001217 1 569 6.8E-146 T 11-10-2018 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 AMK58_09680 9f0ce52e06682463f1b91ebead3ee256 583 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 292 510 3.0E-50 T 11-10-2018 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 AMK58_09680 9f0ce52e06682463f1b91ebead3ee256 583 SUPERFAMILY SSF52096 283 498 1.7E-41 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMK58_09680 9f0ce52e06682463f1b91ebead3ee256 583 Gene3D G3DSA:3.90.226.10 67 282 1.2E-138 T 11-10-2018 AMK58_09680 9f0ce52e06682463f1b91ebead3ee256 583 Pfam PF01343 Peptidase family S49 361 512 1.9E-45 T 11-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 AMK58_09680 9f0ce52e06682463f1b91ebead3ee256 583 Pfam PF01343 Peptidase family S49 130 261 1.4E-27 T 11-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 AMK58_09680 9f0ce52e06682463f1b91ebead3ee256 583 SUPERFAMILY SSF52096 65 255 1.56E-19 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMK58_09680 9f0ce52e06682463f1b91ebead3ee256 583 TIGRFAM TIGR00705 SppA_67K: signal peptide peptidase SppA, 67K type 32 550 1.9E-98 T 11-10-2018 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 AMK58_09680 9f0ce52e06682463f1b91ebead3ee256 583 Gene3D G3DSA:3.90.226.10 283 511 1.2E-138 T 11-10-2018 AMK58_23720 ba2c9de0f615ce517deb9fdc4e501e6c 513 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 357 367 - T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AMK58_23720 ba2c9de0f615ce517deb9fdc4e501e6c 513 Gene3D G3DSA:3.50.50.60 6 371 1.4E-134 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_23720 ba2c9de0f615ce517deb9fdc4e501e6c 513 SUPERFAMILY SSF51905 5 303 2.41E-35 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_23720 ba2c9de0f615ce517deb9fdc4e501e6c 513 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 10 27 - T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AMK58_23720 ba2c9de0f615ce517deb9fdc4e501e6c 513 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 79 91 3.2E-28 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AMK58_23720 ba2c9de0f615ce517deb9fdc4e501e6c 513 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 5 17 3.2E-28 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AMK58_23720 ba2c9de0f615ce517deb9fdc4e501e6c 513 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 34 46 3.2E-28 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AMK58_23720 ba2c9de0f615ce517deb9fdc4e501e6c 513 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 352 364 3.2E-28 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AMK58_23720 ba2c9de0f615ce517deb9fdc4e501e6c 513 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 317 323 3.2E-28 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AMK58_23720 ba2c9de0f615ce517deb9fdc4e501e6c 513 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 18 28 3.2E-28 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AMK58_23720 ba2c9de0f615ce517deb9fdc4e501e6c 513 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 394 496 8.7E-14 T 11-10-2018 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AMK58_23720 ba2c9de0f615ce517deb9fdc4e501e6c 513 Gene3D G3DSA:1.10.8.870 403 470 5.6E-23 T 11-10-2018 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AMK58_23720 ba2c9de0f615ce517deb9fdc4e501e6c 513 Pfam PF01266 FAD dependent oxidoreductase 6 362 1.1E-51 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMK58_23720 ba2c9de0f615ce517deb9fdc4e501e6c 513 Gene3D G3DSA:3.30.9.10 83 324 1.4E-134 T 11-10-2018 AMK58_21655 d572fb853acb7b6723bbe66288b5509f 197 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 17 136 5.8E-11 T 11-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal AMK58_21655 d572fb853acb7b6723bbe66288b5509f 197 Gene3D G3DSA:2.40.160.50 1 174 6.8E-31 T 11-10-2018 AMK58_01805 e16d1256ee89326cc5e884ab368299c9 895 SUPERFAMILY SSF52540 262 732 1.21E-53 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_01805 e16d1256ee89326cc5e884ab368299c9 895 Gene3D G3DSA:3.40.50.300 446 562 3.6E-8 T 11-10-2018 AMK58_01805 e16d1256ee89326cc5e884ab368299c9 895 Gene3D G3DSA:3.40.50.300 258 411 1.4E-11 T 11-10-2018 AMK58_01805 e16d1256ee89326cc5e884ab368299c9 895 Gene3D G3DSA:3.40.50.300 563 746 1.0E-17 T 11-10-2018 AMK58_01805 e16d1256ee89326cc5e884ab368299c9 895 Pfam PF13245 AAA domain 273 536 2.0E-8 T 11-10-2018 AMK58_01805 e16d1256ee89326cc5e884ab368299c9 895 Pfam PF13361 UvrD-like helicase C-terminal domain 669 728 3.0E-9 T 11-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AMK58_10880 624671550532508a7fe5e3cd54bf9ba5 397 Pfam PF04339 Peptidogalycan biosysnthesis/recognition 27 393 7.3E-155 T 11-10-2018 IPR007434 Peptidogalycan biosysnthesis/recognition AMK58_10880 624671550532508a7fe5e3cd54bf9ba5 397 SUPERFAMILY SSF55729 196 370 4.5E-39 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_10880 624671550532508a7fe5e3cd54bf9ba5 397 Gene3D G3DSA:3.40.630.30 194 342 1.5E-5 T 11-10-2018 AMK58_15185 f2b2add1238111b8282584140e5730e1 180 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 57 101 1.0E-14 T 11-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMK58_15185 f2b2add1238111b8282584140e5730e1 180 SUPERFAMILY SSF69118 1 174 8.97E-43 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMK58_15185 f2b2add1238111b8282584140e5730e1 180 Pfam PF02627 Carboxymuconolactone decarboxylase family 44 117 1.8E-14 T 11-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMK58_15185 f2b2add1238111b8282584140e5730e1 180 Gene3D G3DSA:1.20.1290.10 13 175 6.9E-38 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMK58_24510 88ff3ab662a43e1ebc587703e5dea6eb 172 SUPERFAMILY SSF88946 12 84 3.22E-17 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMK58_24510 88ff3ab662a43e1ebc587703e5dea6eb 172 SUPERFAMILY SSF88659 97 158 1.2E-15 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMK58_24510 88ff3ab662a43e1ebc587703e5dea6eb 172 Gene3D G3DSA:1.10.1740.10 1 67 1.3E-19 T 11-10-2018 AMK58_24510 88ff3ab662a43e1ebc587703e5dea6eb 172 Gene3D G3DSA:1.10.10.10 96 161 4.6E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_24510 88ff3ab662a43e1ebc587703e5dea6eb 172 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 12 157 3.8E-22 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMK58_24510 88ff3ab662a43e1ebc587703e5dea6eb 172 Pfam PF04542 Sigma-70 region 2 13 74 2.7E-13 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMK58_24510 88ff3ab662a43e1ebc587703e5dea6eb 172 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 30 61 - T 11-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMK58_24510 88ff3ab662a43e1ebc587703e5dea6eb 172 Pfam PF08281 Sigma-70, region 4 105 154 3.4E-15 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMK58_11740 5942315f9c5c7f7948463f4830d5ff73 137 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 5 132 1.7E-32 T 11-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_11740 5942315f9c5c7f7948463f4830d5ff73 137 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 3 131 19.642 T 11-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_11740 5942315f9c5c7f7948463f4830d5ff73 137 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 10 80 5.0E-23 T 11-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_11740 5942315f9c5c7f7948463f4830d5ff73 137 SUPERFAMILY SSF51344 5 85 1.31E-22 T 11-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_11740 5942315f9c5c7f7948463f4830d5ff73 137 Gene3D G3DSA:2.60.15.10 1 130 3.8E-36 T 11-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_11740 5942315f9c5c7f7948463f4830d5ff73 137 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 6 84 5.7E-26 T 11-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_23905 460f292f568b84c6c810cdcaa42669f4 390 Pfam PF01546 Peptidase family M20/M25/M40 72 383 1.5E-37 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 AMK58_23905 460f292f568b84c6c810cdcaa42669f4 390 Gene3D G3DSA:3.40.630.10 16 371 1.4E-138 T 11-10-2018 AMK58_23905 460f292f568b84c6c810cdcaa42669f4 390 Pfam PF07687 Peptidase dimerisation domain 186 279 5.1E-6 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain AMK58_23905 460f292f568b84c6c810cdcaa42669f4 390 Gene3D G3DSA:3.30.70.360 181 295 1.4E-138 T 11-10-2018 AMK58_23905 460f292f568b84c6c810cdcaa42669f4 390 SUPERFAMILY SSF55031 184 296 3.14E-28 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain AMK58_23905 460f292f568b84c6c810cdcaa42669f4 390 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 15 374 1.3E-110 T 11-10-2018 IPR017439 Amidohydrolase GO:0016787 AMK58_23905 460f292f568b84c6c810cdcaa42669f4 390 PIRSF PIRSF005962 2 389 4.0E-130 T 11-10-2018 IPR017439 Amidohydrolase GO:0016787 AMK58_23905 460f292f568b84c6c810cdcaa42669f4 390 SUPERFAMILY SSF53187 6 386 8.68E-88 T 11-10-2018 AMK58_25360 25f22ec67b508d377c856075d3c3c443 261 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 182 260 1.6E-26 T 11-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain AMK58_25360 25f22ec67b508d377c856075d3c3c443 261 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 3 136 1.4E-46 T 11-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G AMK58_25360 25f22ec67b508d377c856075d3c3c443 261 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 143 243 8.7E-30 T 11-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G AMK58_25360 25f22ec67b508d377c856075d3c3c443 261 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 4 260 6.5E-107 T 11-10-2018 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 AMK58_25360 25f22ec67b508d377c856075d3c3c443 261 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 10 30 - T 11-10-2018 IPR019776 Flagellar basal body rod protein, conserved site AMK58_25360 25f22ec67b508d377c856075d3c3c443 261 SUPERFAMILY SSF117143 93 222 1.05E-33 T 11-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like AMK58_25360 25f22ec67b508d377c856075d3c3c443 261 Pfam PF00460 Flagella basal body rod protein 4 34 1.1E-10 T 11-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 AMK58_22585 d8876ce88051207f8cd936bae40c800e 813 SUPERFAMILY SSF49303 731 786 3.02E-9 T 11-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily AMK58_22585 d8876ce88051207f8cd936bae40c800e 813 SUPERFAMILY SSF49303 192 281 5.28E-6 T 11-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily AMK58_22585 d8876ce88051207f8cd936bae40c800e 813 SUPERFAMILY SSF49785 10 181 4.25E-29 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily AMK58_22585 d8876ce88051207f8cd936bae40c800e 813 SUPERFAMILY SSF51445 279 618 1.41E-77 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily AMK58_22585 d8876ce88051207f8cd936bae40c800e 813 Gene3D G3DSA:3.20.20.80 273 616 4.5E-73 T 11-10-2018 AMK58_22585 d8876ce88051207f8cd936bae40c800e 813 Gene3D G3DSA:2.60.120.260 18 184 6.7E-19 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily AMK58_11280 b2841f2952330aa17a67a173dfa8aeed 192 PIRSF PIRSF004553 1 188 1.5E-44 T 11-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 AMK58_11280 b2841f2952330aa17a67a173dfa8aeed 192 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 2 186 1.1E-37 T 11-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 AMK58_11280 b2841f2952330aa17a67a173dfa8aeed 192 Gene3D G3DSA:3.40.50.150 1 189 1.2E-54 T 11-10-2018 AMK58_11280 b2841f2952330aa17a67a173dfa8aeed 192 SUPERFAMILY SSF53335 1 186 6.98E-41 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_11280 b2841f2952330aa17a67a173dfa8aeed 192 Pfam PF03602 Conserved hypothetical protein 95 1 185 5.6E-44 T 11-10-2018 AMK58_28585 49a26f721b40a0d825b635acebf50fb8 104 SUPERFAMILY SSF46626 6 95 1.22E-14 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_28585 49a26f721b40a0d825b635acebf50fb8 104 Gene3D G3DSA:1.10.760.10 8 98 8.6E-14 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_28585 49a26f721b40a0d825b635acebf50fb8 104 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 31 94 1.9E-8 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_04850 c96955f24096759144c93e4c18e4f5c6 483 Gene3D G3DSA:3.30.70.2190 231 354 1.5E-37 T 11-10-2018 AMK58_04850 c96955f24096759144c93e4c18e4f5c6 483 Gene3D G3DSA:3.30.70.2740 355 441 6.0E-30 T 11-10-2018 AMK58_04850 c96955f24096759144c93e4c18e4f5c6 483 Gene3D G3DSA:3.30.43.10 10 107 3.4E-30 T 11-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 AMK58_04850 c96955f24096759144c93e4c18e4f5c6 483 SUPERFAMILY SSF56176 17 231 4.35E-77 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMK58_04850 c96955f24096759144c93e4c18e4f5c6 483 Gene3D G3DSA:1.10.45.10 442 482 1.5E-13 T 11-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 AMK58_04850 c96955f24096759144c93e4c18e4f5c6 483 Gene3D G3DSA:3.30.465.10 109 230 2.6E-45 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AMK58_04850 c96955f24096759144c93e4c18e4f5c6 483 SUPERFAMILY SSF55103 236 483 1.36E-59 T 11-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 AMK58_04850 c96955f24096759144c93e4c18e4f5c6 483 Pfam PF02913 FAD linked oxidases, C-terminal domain 231 480 4.4E-58 T 11-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 AMK58_04850 c96955f24096759144c93e4c18e4f5c6 483 Pfam PF01565 FAD binding domain 55 191 1.3E-39 T 11-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMK58_01475 35c8a786f4ad078c7c7ad25035276287 275 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 17 104 5.6E-18 T 11-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 AMK58_01475 35c8a786f4ad078c7c7ad25035276287 275 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 106 257 4.4E-27 T 11-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 AMK58_01475 35c8a786f4ad078c7c7ad25035276287 275 Gene3D G3DSA:3.20.20.70 119 259 9.8E-60 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_01475 35c8a786f4ad078c7c7ad25035276287 275 PIRSF PIRSF006250 1 274 2.3E-56 T 11-10-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 AMK58_01475 35c8a786f4ad078c7c7ad25035276287 275 SUPERFAMILY SSF54675 3 105 1.11E-20 T 11-10-2018 AMK58_01475 35c8a786f4ad078c7c7ad25035276287 275 Gene3D G3DSA:3.90.1170.20 10 118 9.8E-60 T 11-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 AMK58_01475 35c8a786f4ad078c7c7ad25035276287 275 SUPERFAMILY SSF51690 106 269 6.67E-40 T 11-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 AMK58_01475 35c8a786f4ad078c7c7ad25035276287 275 TIGRFAM TIGR01334 modD: modD protein 2 272 5.0E-79 T 11-10-2018 IPR006242 Putative pyrophosphorylase ModD GO:0016763 AMK58_04375 22f0bb4542251d2bd4955237d89d87f5 216 Pfam PF00430 ATP synthase B/B' CF(0) 65 193 4.7E-18 T 11-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 AMK58_04375 22f0bb4542251d2bd4955237d89d87f5 216 Hamap MF_01398 ATP synthase subunit b [atpF]. 59 196 11.21 T 11-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 AMK58_08550 08ccf5126bd812b92e181f4108fa2e1a 142 SUPERFAMILY SSF55021 75 135 2.91E-17 T 11-10-2018 AMK58_08550 08ccf5126bd812b92e181f4108fa2e1a 142 Gene3D G3DSA:3.30.2130.10 15 140 1.0E-43 T 11-10-2018 AMK58_08550 08ccf5126bd812b92e181f4108fa2e1a 142 Pfam PF13840 ACT domain 72 133 2.8E-22 T 11-10-2018 IPR027795 CASTOR, ACT domain AMK58_08550 08ccf5126bd812b92e181f4108fa2e1a 142 SUPERFAMILY SSF55021 17 73 2.24E-10 T 11-10-2018 AMK58_08550 08ccf5126bd812b92e181f4108fa2e1a 142 PIRSF PIRSF008459 15 140 3.0E-33 T 11-10-2018 IPR016540 Uncharacterised conserved protein UCP008459 AMK58_09550 68c90f64c81c2331ff96fff09d5a40d6 62 Hamap MF_01361 UPF0391 membrane protein YtjA [ytjA]. 9 58 20.453 T 11-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 AMK58_09550 68c90f64c81c2331ff96fff09d5a40d6 62 PIRSF PIRSF036466 9 62 2.1E-22 T 11-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 AMK58_09550 68c90f64c81c2331ff96fff09d5a40d6 62 Pfam PF07043 Protein of unknown function (DUF1328) 14 50 2.6E-14 T 11-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 AMK58_28595 596264d02079765dd10467cdb81d235a 238 SUPERFAMILY SSF51206 1 130 2.09E-25 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like AMK58_28595 596264d02079765dd10467cdb81d235a 238 Pfam PF13545 Crp-like helix-turn-helix domain 140 207 3.0E-15 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMK58_28595 596264d02079765dd10467cdb81d235a 238 Pfam PF00027 Cyclic nucleotide-binding domain 24 107 4.5E-16 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_28595 596264d02079765dd10467cdb81d235a 238 SMART SM00419 154 201 8.1E-8 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMK58_28595 596264d02079765dd10467cdb81d235a 238 SMART SM00100 1 119 1.0E-13 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_28595 596264d02079765dd10467cdb81d235a 238 SUPERFAMILY SSF46785 139 209 1.95E-8 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_28595 596264d02079765dd10467cdb81d235a 238 Gene3D G3DSA:2.60.120.10 1 129 2.5E-30 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_28595 596264d02079765dd10467cdb81d235a 238 Gene3D G3DSA:1.10.10.10 130 218 2.6E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_20705 fa7774982c34ab3b2da7c86fd2390f22 165 Gene3D G3DSA:1.20.1260.10 1 164 6.0E-66 T 11-10-2018 IPR012347 Ferritin-like AMK58_20705 fa7774982c34ab3b2da7c86fd2390f22 165 SUPERFAMILY SSF47240 1 154 5.32E-54 T 11-10-2018 IPR009078 Ferritin-like superfamily AMK58_20705 fa7774982c34ab3b2da7c86fd2390f22 165 Pfam PF05974 Domain of unknown function (DUF892) 6 161 2.1E-60 T 11-10-2018 IPR010287 Domain of unknown function DUF892 AMK58_00030 f0052cc9ae9d950cbd7892ab95f5481d 396 Gene3D G3DSA:3.40.50.2300 166 376 6.9E-42 T 11-10-2018 AMK58_00030 f0052cc9ae9d950cbd7892ab95f5481d 396 Pfam PF13458 Periplasmic binding protein 55 379 3.0E-42 T 11-10-2018 IPR028081 Leucine-binding protein domain AMK58_00030 f0052cc9ae9d950cbd7892ab95f5481d 396 Gene3D G3DSA:3.40.50.2300 57 369 6.9E-42 T 11-10-2018 AMK58_00030 f0052cc9ae9d950cbd7892ab95f5481d 396 SUPERFAMILY SSF53822 57 383 8.54E-62 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMK58_13815 f0052cc9ae9d950cbd7892ab95f5481d 396 Gene3D G3DSA:3.40.50.2300 166 376 6.9E-42 T 11-10-2018 AMK58_13815 f0052cc9ae9d950cbd7892ab95f5481d 396 Pfam PF13458 Periplasmic binding protein 55 379 3.0E-42 T 11-10-2018 IPR028081 Leucine-binding protein domain AMK58_13815 f0052cc9ae9d950cbd7892ab95f5481d 396 Gene3D G3DSA:3.40.50.2300 57 369 6.9E-42 T 11-10-2018 AMK58_13815 f0052cc9ae9d950cbd7892ab95f5481d 396 SUPERFAMILY SSF53822 57 383 8.54E-62 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMK58_01000 1c3853eb118b5a12b956a06ee84c01ce 515 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 299 310 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMK58_01000 1c3853eb118b5a12b956a06ee84c01ce 515 Pfam PF12801 4Fe-4S binding domain 121 159 9.5E-11 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMK58_01000 1c3853eb118b5a12b956a06ee84c01ce 515 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 390 513 6.8E-29 T 11-10-2018 IPR032879 FixG, C-terminal immunoglobulin-like domain AMK58_01000 1c3853eb118b5a12b956a06ee84c01ce 515 Gene3D G3DSA:2.60.40.10 394 513 4.1E-17 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMK58_01000 1c3853eb118b5a12b956a06ee84c01ce 515 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 60 502 1.3E-155 T 11-10-2018 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021|GO:0055114 AMK58_01000 1c3853eb118b5a12b956a06ee84c01ce 515 SUPERFAMILY SSF54862 130 361 5.65E-28 T 11-10-2018 AMK58_01000 1c3853eb118b5a12b956a06ee84c01ce 515 Pfam PF13746 4Fe-4S dicluster domain 243 351 8.9E-44 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMK58_13695 b03a4ad7089aabe3c3f27536ef173440 231 Gene3D G3DSA:3.40.50.1110 45 227 6.7E-70 T 11-10-2018 IPR036514 SGNH hydrolase superfamily AMK58_13695 b03a4ad7089aabe3c3f27536ef173440 231 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 49 207 1.0E-27 T 11-10-2018 IPR013830 SGNH hydrolase-type esterase domain AMK58_13695 b03a4ad7089aabe3c3f27536ef173440 231 SUPERFAMILY SSF52266 42 223 1.05E-50 T 11-10-2018 AMK58_14420 97e863a3e135d35cd4390fe9b3be523d 332 SUPERFAMILY SSF56281 70 302 1.7E-34 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMK58_14420 97e863a3e135d35cd4390fe9b3be523d 332 Gene3D G3DSA:3.60.15.10 59 331 1.6E-89 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMK58_14420 97e863a3e135d35cd4390fe9b3be523d 332 Pfam PF12706 Beta-lactamase superfamily domain 88 285 1.2E-45 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMK58_14420 97e863a3e135d35cd4390fe9b3be523d 332 PIRSF PIRSF038896 4 33 77.0 T 11-10-2018 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D GO:0008270|GO:0070290 Reactome: R-HSA-2466712 AMK58_14420 97e863a3e135d35cd4390fe9b3be523d 332 PIRSF PIRSF038896 21 330 8.9E-109 T 11-10-2018 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D GO:0008270|GO:0070290 Reactome: R-HSA-2466712 AMK58_05325 b83d2d6426f5ffeaf84b24934777c54c 220 Gene3D G3DSA:3.40.50.1110 1 217 2.1E-9 T 11-10-2018 IPR036514 SGNH hydrolase superfamily AMK58_05325 b83d2d6426f5ffeaf84b24934777c54c 220 SUPERFAMILY SSF52266 3 184 8.55E-7 T 11-10-2018 AMK58_20160 d21b81acd7afe96f4d9b0dd7dd74d724 247 Pfam PF01925 Sulfite exporter TauE/SafE 9 242 6.1E-31 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 AMK58_20695 207e00653f73b4e509f3721d00d23729 1048 Pfam PF16841 Ca-dependent carbohydrate-binding module xylan-binding 295 387 2.2E-32 T 11-10-2018 IPR031768 Carbohydrate binding module, xylan-binding domain MetaCyc: PWY-6717|MetaCyc: PWY-6784 AMK58_20695 207e00653f73b4e509f3721d00d23729 1048 Pfam PF16841 Ca-dependent carbohydrate-binding module xylan-binding 12 104 4.9E-27 T 11-10-2018 IPR031768 Carbohydrate binding module, xylan-binding domain MetaCyc: PWY-6717|MetaCyc: PWY-6784 AMK58_20695 207e00653f73b4e509f3721d00d23729 1048 Pfam PF16841 Ca-dependent carbohydrate-binding module xylan-binding 153 243 1.7E-30 T 11-10-2018 IPR031768 Carbohydrate binding module, xylan-binding domain MetaCyc: PWY-6717|MetaCyc: PWY-6784 AMK58_20695 207e00653f73b4e509f3721d00d23729 1048 Pfam PF13229 Right handed beta helix region 681 825 2.3E-9 T 11-10-2018 IPR039448 Right handed beta helix domain AMK58_20695 207e00653f73b4e509f3721d00d23729 1048 Gene3D G3DSA:2.160.20.10 871 1021 2.2E-9 T 11-10-2018 IPR012334 Pectin lyase fold AMK58_20695 207e00653f73b4e509f3721d00d23729 1048 SUPERFAMILY SSF51126 786 1027 1.4E-17 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor AMK58_20695 207e00653f73b4e509f3721d00d23729 1048 SUPERFAMILY SSF51126 428 836 8.88E-19 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor AMK58_20695 207e00653f73b4e509f3721d00d23729 1048 Gene3D G3DSA:2.160.20.10 426 600 8.6E-16 T 11-10-2018 IPR012334 Pectin lyase fold AMK58_20695 207e00653f73b4e509f3721d00d23729 1048 Gene3D G3DSA:2.60.60.40 293 407 2.9E-7 T 11-10-2018 AMK58_20695 207e00653f73b4e509f3721d00d23729 1048 Gene3D G3DSA:2.60.60.40 149 270 3.4E-7 T 11-10-2018 AMK58_20695 207e00653f73b4e509f3721d00d23729 1048 Gene3D G3DSA:2.160.20.10 655 836 2.1E-13 T 11-10-2018 IPR012334 Pectin lyase fold AMK58_20695 207e00653f73b4e509f3721d00d23729 1048 SMART SM00710 854 891 1700.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_20695 207e00653f73b4e509f3721d00d23729 1048 SMART SM00710 793 815 6.5 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_20695 207e00653f73b4e509f3721d00d23729 1048 SMART SM00710 718 739 8300.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_20695 207e00653f73b4e509f3721d00d23729 1048 SMART SM00710 893 915 220.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_20695 207e00653f73b4e509f3721d00d23729 1048 SMART SM00710 741 763 1600.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_20695 207e00653f73b4e509f3721d00d23729 1048 SMART SM00710 693 717 580.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_20695 207e00653f73b4e509f3721d00d23729 1048 SMART SM00710 950 987 3700.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_20695 207e00653f73b4e509f3721d00d23729 1048 SMART SM00710 822 849 470.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_15860 04fa2f6bc5d9205b73c1868db6bf5a96 500 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 1 498 36.388 T 11-10-2018 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 AMK58_15860 04fa2f6bc5d9205b73c1868db6bf5a96 500 Gene3D G3DSA:3.40.630.10 173 495 4.4E-129 T 11-10-2018 AMK58_15860 04fa2f6bc5d9205b73c1868db6bf5a96 500 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 344 351 - T 11-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AMK58_15860 04fa2f6bc5d9205b73c1868db6bf5a96 500 SUPERFAMILY SSF52949 5 179 8.83E-31 T 11-10-2018 AMK58_15860 04fa2f6bc5d9205b73c1868db6bf5a96 500 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 182 489 8.6E-123 T 11-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AMK58_15860 04fa2f6bc5d9205b73c1868db6bf5a96 500 PRINTS PR00481 Cytosol aminopeptidase signature 259 276 6.8E-55 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMK58_15860 04fa2f6bc5d9205b73c1868db6bf5a96 500 PRINTS PR00481 Cytosol aminopeptidase signature 281 302 6.8E-55 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMK58_15860 04fa2f6bc5d9205b73c1868db6bf5a96 500 PRINTS PR00481 Cytosol aminopeptidase signature 318 339 6.8E-55 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMK58_15860 04fa2f6bc5d9205b73c1868db6bf5a96 500 PRINTS PR00481 Cytosol aminopeptidase signature 369 384 6.8E-55 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMK58_15860 04fa2f6bc5d9205b73c1868db6bf5a96 500 PRINTS PR00481 Cytosol aminopeptidase signature 340 360 6.8E-55 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMK58_15860 04fa2f6bc5d9205b73c1868db6bf5a96 500 Gene3D G3DSA:3.40.220.10 1 172 6.6E-36 T 11-10-2018 AMK58_15860 04fa2f6bc5d9205b73c1868db6bf5a96 500 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 18 144 1.3E-25 T 11-10-2018 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AMK58_15860 04fa2f6bc5d9205b73c1868db6bf5a96 500 SUPERFAMILY SSF53187 177 495 9.73E-120 T 11-10-2018 AMK58_11450 d60dc2baadc1f2a82a0fd8c587db4eb2 79 SUPERFAMILY SSF82657 1 77 1.31E-25 T 11-10-2018 IPR036065 BolA-like superfamily AMK58_11450 d60dc2baadc1f2a82a0fd8c587db4eb2 79 Gene3D G3DSA:3.30.300.90 3 76 1.1E-28 T 11-10-2018 AMK58_11450 d60dc2baadc1f2a82a0fd8c587db4eb2 79 Pfam PF01722 BolA-like protein 27 77 4.1E-15 T 11-10-2018 IPR002634 BolA protein AMK58_11450 d60dc2baadc1f2a82a0fd8c587db4eb2 79 PIRSF PIRSF003113 1 79 6.8E-20 T 11-10-2018 IPR002634 BolA protein AMK58_08050 396075823d2b1ea47bed2687d066f9f1 513 SMART SM00382 167 336 0.0035 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_08050 396075823d2b1ea47bed2687d066f9f1 513 Pfam PF13401 AAA domain 167 317 4.3E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_08050 396075823d2b1ea47bed2687d066f9f1 513 SUPERFAMILY SSF52540 148 403 2.56E-24 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_08050 396075823d2b1ea47bed2687d066f9f1 513 Gene3D G3DSA:3.40.50.300 139 331 1.8E-14 T 11-10-2018 AMK58_25065 cb4909432a36daf635a36665072dd603 426 Pfam PF09375 Imelysin 41 398 1.2E-91 T 11-10-2018 IPR018976 Imelysin-like domain AMK58_25065 cb4909432a36daf635a36665072dd603 426 Gene3D G3DSA:1.20.1420.20 17 405 5.8E-78 T 11-10-2018 IPR038352 Imelysin-like domain superfamily AMK58_11485 de9dc1ad9236a56f9d0ab5c9cf75a9d5 98 Hamap MF_02117 N(2)-fixation sustaining protein CowN [cowN]. 4 98 26.215 T 11-10-2018 IPR024899 Nitrogen fixation-sustaining protein CowN GO:0009399 AMK58_04340 d8e242f59dbd32016ad899c0da47e43d 348 Pfam PF01292 Prokaryotic cytochrome b561 134 313 4.4E-18 T 11-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 AMK58_04340 d8e242f59dbd32016ad899c0da47e43d 348 Gene3D G3DSA:1.20.950.20 127 341 2.0E-62 T 11-10-2018 AMK58_04340 d8e242f59dbd32016ad899c0da47e43d 348 TIGRFAM TIGR01583 formate-DH-gamm: formate dehydrogenase, gamma subunit 132 332 2.0E-47 T 11-10-2018 IPR006471 Formate dehydrogenase, gamma subunit GO:0008863|GO:0009326|GO:0016021|GO:0045333 AMK58_04340 d8e242f59dbd32016ad899c0da47e43d 348 SUPERFAMILY SSF81342 128 338 3.14E-42 T 11-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 AMK58_27895 14c8b3ee4fdb761ea1c2681cc46ad4db 324 Gene3D G3DSA:3.40.50.1980 23 145 1.3E-20 T 11-10-2018 AMK58_27895 14c8b3ee4fdb761ea1c2681cc46ad4db 324 SUPERFAMILY SSF53807 43 320 7.85E-45 T 11-10-2018 AMK58_27895 14c8b3ee4fdb761ea1c2681cc46ad4db 324 Gene3D G3DSA:3.40.50.1980 149 320 1.2E-45 T 11-10-2018 AMK58_27895 14c8b3ee4fdb761ea1c2681cc46ad4db 324 Pfam PF01497 Periplasmic binding protein 53 295 1.1E-24 T 11-10-2018 IPR002491 ABC transporter periplasmic binding domain AMK58_09380 fce58c842501879c4bb50e63811c1acf 257 Pfam PF00691 OmpA family 162 240 6.8E-9 T 11-10-2018 IPR006665 OmpA-like domain AMK58_09380 fce58c842501879c4bb50e63811c1acf 257 SUPERFAMILY SSF103088 151 241 8.89E-12 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMK58_09380 fce58c842501879c4bb50e63811c1acf 257 Gene3D G3DSA:3.30.1330.60 136 245 2.0E-11 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMK58_14005 5de0fdb8f987ec73e938da525367d30d 253 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 36 252 3.5E-28 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMK58_14005 5de0fdb8f987ec73e938da525367d30d 253 SUPERFAMILY SSF53850 36 251 7.03E-40 T 11-10-2018 AMK58_14005 5de0fdb8f987ec73e938da525367d30d 253 Gene3D G3DSA:3.40.190.10 40 250 5.3E-31 T 11-10-2018 AMK58_14005 5de0fdb8f987ec73e938da525367d30d 253 SMART SM00062 34 253 2.4E-11 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMK58_14005 5de0fdb8f987ec73e938da525367d30d 253 Gene3D G3DSA:3.40.190.10 118 213 5.3E-31 T 11-10-2018 AMK58_00355 cc1f582c00ff7fd44b9d4d65cad0d9e6 268 SUPERFAMILY SSF52540 12 264 1.1E-69 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_00355 cc1f582c00ff7fd44b9d4d65cad0d9e6 268 Pfam PF13614 AAA domain 13 188 8.5E-63 T 11-10-2018 IPR025669 AAA domain AMK58_00355 cc1f582c00ff7fd44b9d4d65cad0d9e6 268 Gene3D G3DSA:3.40.50.300 9 267 2.8E-81 T 11-10-2018 AMK58_00980 1ae3eb394fbb31f89adc7f451822af85 498 SUPERFAMILY SSF81442 24 481 1.13E-122 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_00980 1ae3eb394fbb31f89adc7f451822af85 498 Gene3D G3DSA:1.20.210.10 16 489 1.6E-193 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_00980 1ae3eb394fbb31f89adc7f451822af85 498 TIGRFAM TIGR00780 ccoN: cytochrome c oxidase, cbb3-type, subunit I 24 488 6.8E-225 T 11-10-2018 IPR004677 Cytochrome c oxidase cbb3-type, subunit I GO:0004129|GO:0045278|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 AMK58_00980 1ae3eb394fbb31f89adc7f451822af85 498 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 220 275 - T 11-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_00980 1ae3eb394fbb31f89adc7f451822af85 498 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 27 460 7.3E-117 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_08155 f4682a999f677a5e0a6c2827a6180953 94 Pfam PF07369 Protein of unknown function (DUF1488) 6 84 4.4E-10 T 11-10-2018 IPR009962 Protein of unknown function DUF1488 AMK58_08155 f4682a999f677a5e0a6c2827a6180953 94 SUPERFAMILY SSF160272 5 84 6.02E-5 T 11-10-2018 IPR036692 Shew3726-like superfamily AMK58_21065 b353986d8e7c6d8356ca654daf35af1a 525 Pfam PF04552 Sigma-54, DNA binding domain 360 519 4.0E-71 T 11-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding AMK58_21065 b353986d8e7c6d8356ca654daf35af1a 525 Gene3D G3DSA:1.10.10.60 461 518 2.3E-21 T 11-10-2018 AMK58_21065 b353986d8e7c6d8356ca654daf35af1a 525 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 11 518 5.7E-127 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMK58_21065 b353986d8e7c6d8356ca654daf35af1a 525 Pfam PF04963 Sigma-54 factor, core binding domain 158 345 9.3E-48 T 11-10-2018 IPR007046 RNA polymerase sigma factor 54, core-binding domain GO:0003677|GO:0006352 AMK58_21065 b353986d8e7c6d8356ca654daf35af1a 525 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 6 50 1.5E-18 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMK58_21065 b353986d8e7c6d8356ca654daf35af1a 525 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 499 506 - T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMK58_21065 b353986d8e7c6d8356ca654daf35af1a 525 Gene3D G3DSA:1.10.10.1330 164 280 6.5E-22 T 11-10-2018 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily AMK58_21065 b353986d8e7c6d8356ca654daf35af1a 525 PRINTS PR00045 Sigma-54 factor signature 231 248 4.4E-33 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMK58_21065 b353986d8e7c6d8356ca654daf35af1a 525 PRINTS PR00045 Sigma-54 factor signature 494 512 4.4E-33 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMK58_21065 b353986d8e7c6d8356ca654daf35af1a 525 PRINTS PR00045 Sigma-54 factor signature 435 446 4.4E-33 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMK58_21065 b353986d8e7c6d8356ca654daf35af1a 525 PRINTS PR00045 Sigma-54 factor signature 419 431 4.4E-33 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMK58_21065 b353986d8e7c6d8356ca654daf35af1a 525 PIRSF PIRSF000774 1 521 2.6E-144 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMK58_21065 b353986d8e7c6d8356ca654daf35af1a 525 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 407 426 - T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMK58_08530 d873491290a262bd1057f5d324cbdff7 217 Pfam PF01323 DSBA-like thioredoxin domain 3 198 1.5E-38 T 11-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 AMK58_08530 d873491290a262bd1057f5d324cbdff7 217 Gene3D G3DSA:3.40.30.10 1 204 4.1E-65 T 11-10-2018 AMK58_08530 d873491290a262bd1057f5d324cbdff7 217 SUPERFAMILY SSF52833 2 205 5.37E-45 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_08910 0e21d4185980ad2559191c7576a42679 367 Gene3D G3DSA:3.30.200.20 9 120 1.2E-11 T 11-10-2018 AMK58_08910 0e21d4185980ad2559191c7576a42679 367 SUPERFAMILY SSF56112 33 317 5.69E-41 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily AMK58_08910 0e21d4185980ad2559191c7576a42679 367 Gene3D G3DSA:3.90.1200.10 124 330 5.0E-38 T 11-10-2018 AMK58_08910 0e21d4185980ad2559191c7576a42679 367 Pfam PF01636 Phosphotransferase enzyme family 81 278 2.3E-30 T 11-10-2018 IPR002575 Aminoglycoside phosphotransferase AMK58_19320 53670f868c4876c4c1de311128cc2f63 79 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 39 55 9.7E-19 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC AMK58_19320 53670f868c4876c4c1de311128cc2f63 79 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 2 9 9.7E-19 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC AMK58_19320 53670f868c4876c4c1de311128cc2f63 79 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 18 34 9.7E-19 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC AMK58_19320 53670f868c4876c4c1de311128cc2f63 79 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 57 69 9.7E-19 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC AMK58_19320 53670f868c4876c4c1de311128cc2f63 79 Gene3D G3DSA:2.40.50.970 1 73 3.8E-26 T 11-10-2018 IPR037254 HupF/HypC superfamily AMK58_19320 53670f868c4876c4c1de311128cc2f63 79 TIGRFAM TIGR00074 hypC_hupF: hydrogenase assembly chaperone HypC/HupF 1 72 2.9E-22 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC AMK58_19320 53670f868c4876c4c1de311128cc2f63 79 Pfam PF01455 HupF/HypC family 1 65 4.0E-25 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC AMK58_19320 53670f868c4876c4c1de311128cc2f63 79 ProSitePatterns PS01097 Hydrogenases expression/synthesis hupF/hypC family signature. 1 9 - T 11-10-2018 IPR019812 Hydrogenase assembly chaperone, conserved site AMK58_19320 53670f868c4876c4c1de311128cc2f63 79 SUPERFAMILY SSF159127 1 72 5.36E-23 T 11-10-2018 IPR037254 HupF/HypC superfamily AMK58_06485 2a13962317f0f676c28fa8cf6687ede9 425 Pfam PF03952 Enolase, N-terminal domain 4 134 1.4E-58 T 11-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_06485 2a13962317f0f676c28fa8cf6687ede9 425 SUPERFAMILY SSF51604 141 422 2.83E-126 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMK58_06485 2a13962317f0f676c28fa8cf6687ede9 425 Gene3D G3DSA:3.20.20.120 128 425 1.8E-130 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMK58_06485 2a13962317f0f676c28fa8cf6687ede9 425 SUPERFAMILY SSF54826 3 138 5.96E-55 T 11-10-2018 AMK58_06485 2a13962317f0f676c28fa8cf6687ede9 425 PRINTS PR00148 Enolase signature 37 51 9.2E-49 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_06485 2a13962317f0f676c28fa8cf6687ede9 425 PRINTS PR00148 Enolase signature 363 380 9.2E-49 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_06485 2a13962317f0f676c28fa8cf6687ede9 425 PRINTS PR00148 Enolase signature 107 123 9.2E-49 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_06485 2a13962317f0f676c28fa8cf6687ede9 425 PRINTS PR00148 Enolase signature 334 348 9.2E-49 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_06485 2a13962317f0f676c28fa8cf6687ede9 425 PRINTS PR00148 Enolase signature 311 322 9.2E-49 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_06485 2a13962317f0f676c28fa8cf6687ede9 425 PRINTS PR00148 Enolase signature 161 174 9.2E-49 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_06485 2a13962317f0f676c28fa8cf6687ede9 425 PIRSF PIRSF001400 1 425 3.0E-186 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_06485 2a13962317f0f676c28fa8cf6687ede9 425 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 421 1.3E-205 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_06485 2a13962317f0f676c28fa8cf6687ede9 425 SMART SM01192 139 425 4.7E-220 T 11-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_06485 2a13962317f0f676c28fa8cf6687ede9 425 Pfam PF00113 Enolase, C-terminal TIM barrel domain 141 423 2.9E-130 T 11-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_06485 2a13962317f0f676c28fa8cf6687ede9 425 SMART SM01193 4 134 1.1E-93 T 11-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_06485 2a13962317f0f676c28fa8cf6687ede9 425 ProSitePatterns PS00164 Enolase signature. 334 347 - T 11-10-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMK58_06485 2a13962317f0f676c28fa8cf6687ede9 425 Hamap MF_00318 Enolase [eno]. 2 411 44.67 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMK58_06485 2a13962317f0f676c28fa8cf6687ede9 425 Gene3D G3DSA:3.30.390.10 1 127 1.5E-56 T 11-10-2018 IPR029017 Enolase-like, N-terminal AMK58_19480 449d4009ea031f4e29a2caa03ad49cad 109 SUPERFAMILY SSF101801 32 107 1.15E-22 T 11-10-2018 IPR036429 SpoA-like superfamily AMK58_19480 449d4009ea031f4e29a2caa03ad49cad 109 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 34 104 9.6E-25 T 11-10-2018 IPR001543 Surface presentation of antigen (SpoA) AMK58_19480 449d4009ea031f4e29a2caa03ad49cad 109 PRINTS PR00956 Flagellar motor switch protein FliN signature 51 67 9.4E-25 T 11-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 AMK58_19480 449d4009ea031f4e29a2caa03ad49cad 109 PRINTS PR00956 Flagellar motor switch protein FliN signature 34 50 9.4E-25 T 11-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 AMK58_19480 449d4009ea031f4e29a2caa03ad49cad 109 PRINTS PR00956 Flagellar motor switch protein FliN signature 80 95 9.4E-25 T 11-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 AMK58_19480 449d4009ea031f4e29a2caa03ad49cad 109 PRINTS PR00956 Flagellar motor switch protein FliN signature 67 80 9.4E-25 T 11-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 AMK58_19480 449d4009ea031f4e29a2caa03ad49cad 109 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 32 106 1.6E-31 T 11-10-2018 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 AMK58_19480 449d4009ea031f4e29a2caa03ad49cad 109 Gene3D G3DSA:2.30.330.10 22 108 1.2E-30 T 11-10-2018 IPR036429 SpoA-like superfamily AMK58_08145 ecf989b30d6089034badfce3f221868a 102 SUPERFAMILY SSF55718 15 101 5.05E-20 T 11-10-2018 IPR036527 SCP2 sterol-binding domain superfamily AMK58_08145 ecf989b30d6089034badfce3f221868a 102 Pfam PF02036 SCP-2 sterol transfer family 5 101 3.7E-18 T 11-10-2018 IPR003033 SCP2 sterol-binding domain AMK58_08145 ecf989b30d6089034badfce3f221868a 102 Gene3D G3DSA:3.30.1050.10 1 102 1.2E-21 T 11-10-2018 IPR036527 SCP2 sterol-binding domain superfamily AMK58_09120 873bbf2d8e2e10fa6742e5a5439b677d 524 Gene3D G3DSA:1.20.1480.50 145 240 2.8E-14 T 11-10-2018 AMK58_09120 873bbf2d8e2e10fa6742e5a5439b677d 524 SUPERFAMILY SSF158472 181 231 1.23E-11 T 11-10-2018 AMK58_09120 873bbf2d8e2e10fa6742e5a5439b677d 524 Pfam PF00672 HAMP domain 181 229 7.3E-14 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_09120 873bbf2d8e2e10fa6742e5a5439b677d 524 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 303 506 6.4E-21 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AMK58_09120 873bbf2d8e2e10fa6742e5a5439b677d 524 SMART SM00331 278 506 6.3E-7 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AMK58_09120 873bbf2d8e2e10fa6742e5a5439b677d 524 Gene3D G3DSA:3.60.40.10 242 507 9.6E-57 T 11-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AMK58_09120 873bbf2d8e2e10fa6742e5a5439b677d 524 SMART SM00304 181 233 5.6E-15 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_17930 8134b28ca2f8ce4262bf9a9b94ad1880 657 SMART SM00304 320 375 0.0021 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_17930 8134b28ca2f8ce4262bf9a9b94ad1880 657 SMART SM00331 424 642 5.2E-28 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AMK58_17930 8134b28ca2f8ce4262bf9a9b94ad1880 657 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 451 642 2.7E-35 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AMK58_17930 8134b28ca2f8ce4262bf9a9b94ad1880 657 Gene3D G3DSA:3.60.40.10 391 644 2.0E-58 T 11-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AMK58_17930 8134b28ca2f8ce4262bf9a9b94ad1880 657 Pfam PF00672 HAMP domain 320 369 1.4E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_11270 385024c2a929dc25c52a0e245308c96c 562 SMART SM00642 14 416 1.0E-89 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMK58_11270 385024c2a929dc25c52a0e245308c96c 562 SUPERFAMILY SSF51445 5 458 2.98E-114 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily AMK58_11270 385024c2a929dc25c52a0e245308c96c 562 SUPERFAMILY SSF51011 461 542 1.94E-11 T 11-10-2018 AMK58_11270 385024c2a929dc25c52a0e245308c96c 562 Gene3D G3DSA:3.20.20.80 6 456 1.0E-182 T 11-10-2018 AMK58_11270 385024c2a929dc25c52a0e245308c96c 562 Pfam PF00128 Alpha amylase, catalytic domain 29 384 3.1E-73 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMK58_11270 385024c2a929dc25c52a0e245308c96c 562 Gene3D G3DSA:2.60.40.1180 461 543 6.8E-10 T 11-10-2018 IPR013780 Glycosyl hydrolase, all-beta AMK58_11270 385024c2a929dc25c52a0e245308c96c 562 Pfam PF16657 Maltogenic Amylase, C-terminal domain 461 539 2.9E-7 T 11-10-2018 IPR032091 Maltogenic Amylase, C-terminal AMK58_11270 385024c2a929dc25c52a0e245308c96c 562 Gene3D G3DSA:3.90.400.10 104 173 1.0E-182 T 11-10-2018 AMK58_22230 1340267123ecba9d4ff452626c7aa0a1 294 SUPERFAMILY SSF46785 39 111 7.1E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_22230 1340267123ecba9d4ff452626c7aa0a1 294 SUPERFAMILY SSF55781 105 281 2.75E-42 T 11-10-2018 AMK58_22230 1340267123ecba9d4ff452626c7aa0a1 294 SMART SM00346 38 128 4.7E-25 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMK58_22230 1340267123ecba9d4ff452626c7aa0a1 294 Pfam PF01614 Bacterial transcriptional regulator 160 281 1.9E-23 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal AMK58_22230 1340267123ecba9d4ff452626c7aa0a1 294 Gene3D G3DSA:3.30.450.40 111 283 2.5E-44 T 11-10-2018 IPR029016 GAF-like domain superfamily AMK58_22230 1340267123ecba9d4ff452626c7aa0a1 294 Pfam PF09339 IclR helix-turn-helix domain 40 91 2.3E-15 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMK58_22230 1340267123ecba9d4ff452626c7aa0a1 294 Gene3D G3DSA:1.10.10.10 33 109 4.8E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_11780 8883db6b04a131b2bb42c2f5d257df06 218 TIGRFAM TIGR00875 fsa_talC_mipB: fructose-6-phosphate aldolase 1 212 4.3E-89 T 11-10-2018 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 AMK58_11780 8883db6b04a131b2bb42c2f5d257df06 218 SUPERFAMILY SSF51569 1 216 1.67E-78 T 11-10-2018 AMK58_11780 8883db6b04a131b2bb42c2f5d257df06 218 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 3 213 5.5E-60 T 11-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 AMK58_11780 8883db6b04a131b2bb42c2f5d257df06 218 ProSitePatterns PS01054 Transaldolase signature 1. 24 32 - T 11-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 AMK58_11780 8883db6b04a131b2bb42c2f5d257df06 218 Gene3D G3DSA:3.20.20.70 1 217 1.0E-88 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_11780 8883db6b04a131b2bb42c2f5d257df06 218 Hamap MF_00494 Probable transaldolase [tal]. 1 215 44.523 T 11-10-2018 IPR022999 Transaldolase type 3B, putative GO:0004801 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 AMK58_15620 6159a05fb009d9fa70d2abc9bd52d67d 122 Gene3D G3DSA:3.10.450.50 1 118 4.9E-40 T 11-10-2018 AMK58_15620 6159a05fb009d9fa70d2abc9bd52d67d 122 Pfam PF12680 SnoaL-like domain 8 110 8.1E-13 T 11-10-2018 IPR037401 SnoaL-like domain AMK58_15620 6159a05fb009d9fa70d2abc9bd52d67d 122 SUPERFAMILY SSF54427 1 116 6.76E-36 T 11-10-2018 IPR032710 NTF2-like domain superfamily AMK58_29135 f2ad3c03f95b02c8aea237f13625d8f9 467 SUPERFAMILY SSF53738 154 255 2.32E-26 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_29135 f2ad3c03f95b02c8aea237f13625d8f9 467 SUPERFAMILY SSF53738 6 132 3.81E-41 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_29135 f2ad3c03f95b02c8aea237f13625d8f9 467 Gene3D G3DSA:3.40.120.10 172 249 2.9E-26 T 11-10-2018 AMK58_29135 f2ad3c03f95b02c8aea237f13625d8f9 467 Gene3D G3DSA:3.30.310.50 369 457 7.9E-24 T 11-10-2018 AMK58_29135 f2ad3c03f95b02c8aea237f13625d8f9 467 SUPERFAMILY SSF55957 367 452 4.88E-22 T 11-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_29135 f2ad3c03f95b02c8aea237f13625d8f9 467 SUPERFAMILY SSF53738 257 365 1.29E-33 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_29135 f2ad3c03f95b02c8aea237f13625d8f9 467 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 99 113 7.0E-22 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_29135 f2ad3c03f95b02c8aea237f13625d8f9 467 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 233 248 7.0E-22 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_29135 f2ad3c03f95b02c8aea237f13625d8f9 467 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 204 217 7.0E-22 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_29135 f2ad3c03f95b02c8aea237f13625d8f9 467 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 170 189 7.0E-22 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_29135 f2ad3c03f95b02c8aea237f13625d8f9 467 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 100 109 - T 11-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_29135 f2ad3c03f95b02c8aea237f13625d8f9 467 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 373 451 1.3E-12 T 11-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_29135 f2ad3c03f95b02c8aea237f13625d8f9 467 Gene3D G3DSA:3.40.120.10 251 368 1.1E-37 T 11-10-2018 AMK58_29135 f2ad3c03f95b02c8aea237f13625d8f9 467 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 156 253 2.3E-20 T 11-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_29135 f2ad3c03f95b02c8aea237f13625d8f9 467 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 258 366 1.1E-20 T 11-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_29135 f2ad3c03f95b02c8aea237f13625d8f9 467 Gene3D G3DSA:3.40.120.10 1 152 6.5E-50 T 11-10-2018 AMK58_29135 f2ad3c03f95b02c8aea237f13625d8f9 467 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 13 127 1.0E-36 T 11-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMK58_14300 7f6253fc7e34c2c5e4135f3a5498d22d 776 SUPERFAMILY SSF53756 464 709 2.09E-6 T 11-10-2018 AMK58_14300 7f6253fc7e34c2c5e4135f3a5498d22d 776 SUPERFAMILY SSF48452 8 138 1.67E-19 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_14300 7f6253fc7e34c2c5e4135f3a5498d22d 776 Pfam PF13414 TPR repeat 215 252 1.8E-6 T 11-10-2018 AMK58_14300 7f6253fc7e34c2c5e4135f3a5498d22d 776 Gene3D G3DSA:1.25.40.10 5 118 3.1E-21 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_14300 7f6253fc7e34c2c5e4135f3a5498d22d 776 Pfam PF13432 Tetratricopeptide repeat 145 207 1.5E-4 T 11-10-2018 AMK58_14300 7f6253fc7e34c2c5e4135f3a5498d22d 776 Pfam PF13432 Tetratricopeptide repeat 50 106 2.9E-5 T 11-10-2018 AMK58_14300 7f6253fc7e34c2c5e4135f3a5498d22d 776 SMART SM00028 140 173 2.1 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14300 7f6253fc7e34c2c5e4135f3a5498d22d 776 SMART SM00028 38 71 190.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14300 7f6253fc7e34c2c5e4135f3a5498d22d 776 SMART SM00028 72 105 0.0041 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14300 7f6253fc7e34c2c5e4135f3a5498d22d 776 SMART SM00028 4 37 37.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14300 7f6253fc7e34c2c5e4135f3a5498d22d 776 SMART SM00028 174 207 0.11 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14300 7f6253fc7e34c2c5e4135f3a5498d22d 776 SMART SM00028 208 241 0.3 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14300 7f6253fc7e34c2c5e4135f3a5498d22d 776 Gene3D G3DSA:3.40.50.2000 583 756 1.0E-43 T 11-10-2018 AMK58_14300 7f6253fc7e34c2c5e4135f3a5498d22d 776 Gene3D G3DSA:1.25.40.10 121 344 2.1E-34 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_14300 7f6253fc7e34c2c5e4135f3a5498d22d 776 SUPERFAMILY SSF48452 103 341 2.46E-28 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_14300 7f6253fc7e34c2c5e4135f3a5498d22d 776 Pfam PF13844 Glycosyl transferase family 41 576 751 7.4E-11 T 11-10-2018 IPR029489 O-GlcNAc transferase, C-terminal KEGG: 00514+2.4.1.255|MetaCyc: PWY-7437|Reactome: R-HSA-3214847|Reactome: R-HSA-5689603 AMK58_14300 7f6253fc7e34c2c5e4135f3a5498d22d 776 Gene3D G3DSA:3.40.50.11380 422 582 3.9E-34 T 11-10-2018 AMK58_08855 2286c89a50adc0930b16450e6d3ae25f 161 Gene3D G3DSA:1.20.1260.10 1 158 3.2E-67 T 11-10-2018 IPR012347 Ferritin-like AMK58_08855 2286c89a50adc0930b16450e6d3ae25f 161 TIGRFAM TIGR00754 bfr: bacterioferritin 1 155 1.2E-72 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMK58_08855 2286c89a50adc0930b16450e6d3ae25f 161 PIRSF PIRSF002560 1 157 4.2E-69 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMK58_08855 2286c89a50adc0930b16450e6d3ae25f 161 SUPERFAMILY SSF47240 1 154 6.37E-50 T 11-10-2018 IPR009078 Ferritin-like superfamily AMK58_08855 2286c89a50adc0930b16450e6d3ae25f 161 PRINTS PR00601 Bacterioferritin signature 128 149 5.0E-65 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMK58_08855 2286c89a50adc0930b16450e6d3ae25f 161 PRINTS PR00601 Bacterioferritin signature 23 43 5.0E-65 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMK58_08855 2286c89a50adc0930b16450e6d3ae25f 161 PRINTS PR00601 Bacterioferritin signature 3 22 5.0E-65 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMK58_08855 2286c89a50adc0930b16450e6d3ae25f 161 PRINTS PR00601 Bacterioferritin signature 44 64 5.0E-65 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMK58_08855 2286c89a50adc0930b16450e6d3ae25f 161 PRINTS PR00601 Bacterioferritin signature 86 106 5.0E-65 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMK58_08855 2286c89a50adc0930b16450e6d3ae25f 161 PRINTS PR00601 Bacterioferritin signature 107 127 5.0E-65 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMK58_08855 2286c89a50adc0930b16450e6d3ae25f 161 PRINTS PR00601 Bacterioferritin signature 65 85 5.0E-65 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMK58_08855 2286c89a50adc0930b16450e6d3ae25f 161 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMK58_08855 2286c89a50adc0930b16450e6d3ae25f 161 Pfam PF00210 Ferritin-like domain 9 144 3.4E-38 T 11-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 AMK58_14805 db42e91bce6d72cb5c45e4cd9e47724c 570 Gene3D G3DSA:1.10.287.950 280 564 6.7E-50 T 11-10-2018 AMK58_14805 db42e91bce6d72cb5c45e4cd9e47724c 570 Gene3D G3DSA:1.20.1480.50 180 279 6.8E-17 T 11-10-2018 AMK58_14805 db42e91bce6d72cb5c45e4cd9e47724c 570 SUPERFAMILY SSF58104 250 563 1.23E-56 T 11-10-2018 AMK58_14805 db42e91bce6d72cb5c45e4cd9e47724c 570 SMART SM00304 491 554 74.0 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_14805 db42e91bce6d72cb5c45e4cd9e47724c 570 SMART SM00304 221 274 1.3E-11 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_14805 db42e91bce6d72cb5c45e4cd9e47724c 570 SMART SM00283 310 564 1.9E-37 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_14805 db42e91bce6d72cb5c45e4cd9e47724c 570 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 374 534 1.5E-29 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_14805 db42e91bce6d72cb5c45e4cd9e47724c 570 Pfam PF00672 HAMP domain 221 267 5.8E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_05020 e57757d288b95458da9c120b0bad6355 139 Pfam PF01894 Uncharacterised protein family UPF0047 19 135 5.1E-39 T 11-10-2018 IPR001602 Uncharacterised protein family UPF0047 AMK58_05020 e57757d288b95458da9c120b0bad6355 139 SUPERFAMILY SSF111038 3 139 7.33E-48 T 11-10-2018 IPR035917 YjbQ-like superfamily AMK58_05020 e57757d288b95458da9c120b0bad6355 139 TIGRFAM TIGR00149 TIGR00149_YjbQ: secondary thiamine-phosphate synthase enzyme 8 139 1.7E-43 T 11-10-2018 IPR001602 Uncharacterised protein family UPF0047 AMK58_05020 e57757d288b95458da9c120b0bad6355 139 Gene3D G3DSA:2.60.120.460 1 139 4.5E-42 T 11-10-2018 IPR035917 YjbQ-like superfamily AMK58_05020 e57757d288b95458da9c120b0bad6355 139 PIRSF PIRSF004681 1 139 2.6E-49 T 11-10-2018 IPR001602 Uncharacterised protein family UPF0047 AMK58_00965 283035852c92e2c0b38ac2fe941d124f 450 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 381 411 - T 11-10-2018 IPR030390 RNA methyltransferase TrmA, active site AMK58_00965 283035852c92e2c0b38ac2fe941d124f 450 Gene3D G3DSA:3.40.50.150 102 444 8.7E-80 T 11-10-2018 AMK58_00965 283035852c92e2c0b38ac2fe941d124f 450 Gene3D G3DSA:3.40.1350.30 147 289 8.7E-80 T 11-10-2018 AMK58_00965 283035852c92e2c0b38ac2fe941d124f 450 Gene3D G3DSA:2.40.50.140 16 101 8.9E-16 T 11-10-2018 AMK58_00965 283035852c92e2c0b38ac2fe941d124f 450 SUPERFAMILY SSF50249 28 88 1.09E-7 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_00965 283035852c92e2c0b38ac2fe941d124f 450 SUPERFAMILY SSF53335 90 448 4.29E-54 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_00965 283035852c92e2c0b38ac2fe941d124f 450 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 374 446 2.3E-7 T 11-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 AMK58_09465 e8cf8ce81c1477599731ebf553fbedd2 196 Gene3D G3DSA:3.40.630.30 19 195 7.0E-54 T 11-10-2018 AMK58_09465 e8cf8ce81c1477599731ebf553fbedd2 196 Pfam PF13302 Acetyltransferase (GNAT) domain 24 166 3.5E-22 T 11-10-2018 IPR000182 GNAT domain AMK58_09465 e8cf8ce81c1477599731ebf553fbedd2 196 SUPERFAMILY SSF55729 13 191 1.8E-48 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_17070 2a6ca84f65abc23fca1648884eac81b6 261 PIRSF PIRSF015626 7 261 7.4E-71 T 11-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 AMK58_17070 2a6ca84f65abc23fca1648884eac81b6 261 Gene3D G3DSA:3.10.20.10 31 116 2.6E-10 T 11-10-2018 AMK58_17070 2a6ca84f65abc23fca1648884eac81b6 261 SUPERFAMILY SSF53927 22 260 3.31E-72 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 AMK58_17070 2a6ca84f65abc23fca1648884eac81b6 261 Hamap MF_00187 Sulfur carrier protein FdhD [fdhD]. 13 261 26.946 T 11-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 AMK58_17070 2a6ca84f65abc23fca1648884eac81b6 261 Pfam PF02634 FdhD/NarQ family 29 259 2.2E-70 T 11-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 AMK58_17070 2a6ca84f65abc23fca1648884eac81b6 261 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 28 253 1.5E-51 T 11-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 AMK58_17070 2a6ca84f65abc23fca1648884eac81b6 261 Gene3D G3DSA:3.40.140.10 122 261 1.9E-43 T 11-10-2018 AMK58_12880 62471d5a3e745b1902c37543dd3e94ea 525 Gene3D G3DSA:3.40.50.2000 330 493 5.7E-17 T 11-10-2018 AMK58_12880 62471d5a3e745b1902c37543dd3e94ea 525 SUPERFAMILY SSF53756 326 504 1.53E-14 T 11-10-2018 AMK58_12880 62471d5a3e745b1902c37543dd3e94ea 525 Pfam PF13692 Glycosyl transferases group 1 351 473 5.2E-7 T 11-10-2018 AMK58_29255 510a3d3bce84efc40387cbd0983bc8aa 592 Pfam PF00733 Asparagine synthase 242 586 1.1E-56 T 11-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 AMK58_29255 510a3d3bce84efc40387cbd0983bc8aa 592 SUPERFAMILY SSF56235 1 226 4.63E-60 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMK58_29255 510a3d3bce84efc40387cbd0983bc8aa 592 PIRSF PIRSF001589 1 592 1.6E-122 T 11-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 AMK58_29255 510a3d3bce84efc40387cbd0983bc8aa 592 Pfam PF13537 Glutamine amidotransferase domain 45 168 2.5E-40 T 11-10-2018 IPR017932 Glutamine amidotransferase type 2 domain AMK58_29255 510a3d3bce84efc40387cbd0983bc8aa 592 Gene3D G3DSA:3.60.20.10 13 185 3.3E-56 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMK58_29255 510a3d3bce84efc40387cbd0983bc8aa 592 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 20 530 1.5E-106 T 11-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 AMK58_29255 510a3d3bce84efc40387cbd0983bc8aa 592 SUPERFAMILY SSF52402 222 586 6.28E-55 T 11-10-2018 AMK58_12800 c0903375efb83a946be9e00dc3ff5a9e 247 Gene3D G3DSA:3.40.50.2020 117 246 6.5E-19 T 11-10-2018 AMK58_12800 c0903375efb83a946be9e00dc3ff5a9e 247 SUPERFAMILY SSF53271 69 243 4.06E-35 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like AMK58_12800 c0903375efb83a946be9e00dc3ff5a9e 247 Pfam PF00156 Phosphoribosyl transferase domain 187 242 3.7E-9 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMK58_21800 6850e847f9d267a3eee8cc8c51432bb0 160 SUPERFAMILY SSF48695 33 151 5.0E-42 T 11-10-2018 IPR036280 Multiheme cytochrome superfamily AMK58_21800 6850e847f9d267a3eee8cc8c51432bb0 160 PIRSF PIRSF006105 1 157 3.0E-50 T 11-10-2018 IPR005591 Nitrate reductase cytochrome c-type subunit NapB AMK58_21800 6850e847f9d267a3eee8cc8c51432bb0 160 Gene3D G3DSA:1.10.1130.10 64 131 1.1E-28 T 11-10-2018 AMK58_21800 6850e847f9d267a3eee8cc8c51432bb0 160 Pfam PF03892 Nitrate reductase cytochrome c-type subunit (NapB) 34 145 9.2E-46 T 11-10-2018 IPR005591 Nitrate reductase cytochrome c-type subunit NapB AMK58_27645 2c56ab8651573b9c33985afc79f13ba4 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 9.4E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_27645 2c56ab8651573b9c33985afc79f13ba4 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 9.4E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_27645 2c56ab8651573b9c33985afc79f13ba4 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 9.4E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_27645 2c56ab8651573b9c33985afc79f13ba4 304 Gene3D G3DSA:3.40.190.10 102 283 4.2E-57 T 11-10-2018 AMK58_27645 2c56ab8651573b9c33985afc79f13ba4 304 SUPERFAMILY SSF46785 2 84 2.8E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_27645 2c56ab8651573b9c33985afc79f13ba4 304 SUPERFAMILY SSF53850 94 289 3.26E-36 T 11-10-2018 AMK58_27645 2c56ab8651573b9c33985afc79f13ba4 304 Pfam PF03466 LysR substrate binding domain 94 286 2.0E-36 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_27645 2c56ab8651573b9c33985afc79f13ba4 304 Gene3D G3DSA:3.40.190.10 161 256 4.2E-57 T 11-10-2018 AMK58_27645 2c56ab8651573b9c33985afc79f13ba4 304 Gene3D G3DSA:1.10.10.10 6 92 3.0E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_27645 2c56ab8651573b9c33985afc79f13ba4 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 9.1E-21 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_10195 dbf4e9dd762b69440469295d9dfc0b41 114 SUPERFAMILY SSF48295 17 96 3.56E-20 T 11-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMK58_10195 dbf4e9dd762b69440469295d9dfc0b41 114 Pfam PF06627 Protein of unknown function (DUF1153) 16 96 6.9E-39 T 11-10-2018 IPR009534 Protein of unknown function DUF1153 AMK58_10195 dbf4e9dd762b69440469295d9dfc0b41 114 Gene3D G3DSA:1.10.10.10 16 99 1.2E-36 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_11865 154313338cadcd9ad4490d67a95119cd 197 ProSitePatterns PS01300 RecR protein signature. 56 77 - T 11-10-2018 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 AMK58_11865 154313338cadcd9ad4490d67a95119cd 197 Gene3D G3DSA:1.10.8.420 2 51 4.0E-11 T 11-10-2018 AMK58_11865 154313338cadcd9ad4490d67a95119cd 197 SUPERFAMILY SSF111304 3 197 4.97E-69 T 11-10-2018 IPR023627 Recombination protein RecR AMK58_11865 154313338cadcd9ad4490d67a95119cd 197 Hamap MF_00017 Recombination protein RecR [recR]. 1 197 95.879 T 11-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 AMK58_11865 154313338cadcd9ad4490d67a95119cd 197 Pfam PF02132 RecR protein 41 77 3.6E-12 T 11-10-2018 IPR023628 Recombination protein RecR, C4-type zinc finger AMK58_11865 154313338cadcd9ad4490d67a95119cd 197 Gene3D G3DSA:3.40.1360.10 76 197 6.4E-41 T 11-10-2018 AMK58_11865 154313338cadcd9ad4490d67a95119cd 197 SMART SM00493 79 164 9.1E-4 T 11-10-2018 IPR006171 TOPRIM domain AMK58_11865 154313338cadcd9ad4490d67a95119cd 197 Pfam PF13662 Toprim domain 79 170 3.4E-23 T 11-10-2018 IPR006171 TOPRIM domain AMK58_11865 154313338cadcd9ad4490d67a95119cd 197 TIGRFAM TIGR00615 recR: recombination protein RecR 4 195 1.3E-64 T 11-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 AMK58_22000 24eb97cf616f08125af30040d57231ef 782 Pfam PF13614 AAA domain 599 746 8.6E-8 T 11-10-2018 IPR025669 AAA domain AMK58_22000 24eb97cf616f08125af30040d57231ef 782 Gene3D G3DSA:3.40.50.300 510 777 6.1E-59 T 11-10-2018 AMK58_22000 24eb97cf616f08125af30040d57231ef 782 Pfam PF02706 Chain length determinant protein 48 132 5.2E-7 T 11-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 AMK58_22000 24eb97cf616f08125af30040d57231ef 782 SUPERFAMILY SSF52540 586 762 2.8E-32 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_19490 a3986eeac20bec5d5e74d424e3451dbb 512 Gene3D G3DSA:3.40.50.2300 1 112 2.2E-7 T 11-10-2018 AMK58_19490 a3986eeac20bec5d5e74d424e3451dbb 512 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 144 157 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AMK58_19490 a3986eeac20bec5d5e74d424e3451dbb 512 Pfam PF00158 Sigma-54 interaction domain 120 286 3.6E-69 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AMK58_19490 a3986eeac20bec5d5e74d424e3451dbb 512 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 477 497 2.8E-7 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMK58_19490 a3986eeac20bec5d5e74d424e3451dbb 512 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 460 477 2.8E-7 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMK58_19490 a3986eeac20bec5d5e74d424e3451dbb 512 Gene3D G3DSA:1.10.10.60 435 495 4.2E-14 T 11-10-2018 AMK58_19490 a3986eeac20bec5d5e74d424e3451dbb 512 SUPERFAMILY SSF52540 120 361 1.33E-72 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_19490 a3986eeac20bec5d5e74d424e3451dbb 512 SMART SM00382 140 284 4.2E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_19490 a3986eeac20bec5d5e74d424e3451dbb 512 Pfam PF02954 Bacterial regulatory protein, Fis family 454 494 3.8E-14 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMK58_19490 a3986eeac20bec5d5e74d424e3451dbb 512 Gene3D G3DSA:1.10.8.60 291 368 2.6E-23 T 11-10-2018 AMK58_19490 a3986eeac20bec5d5e74d424e3451dbb 512 Pfam PF00072 Response regulator receiver domain 19 108 6.5E-5 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_19490 a3986eeac20bec5d5e74d424e3451dbb 512 Gene3D G3DSA:3.40.50.300 113 290 5.3E-68 T 11-10-2018 AMK58_19490 a3986eeac20bec5d5e74d424e3451dbb 512 SUPERFAMILY SSF52172 21 164 3.22E-15 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_19490 a3986eeac20bec5d5e74d424e3451dbb 512 SUPERFAMILY SSF46689 333 494 1.25E-12 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_19490 a3986eeac20bec5d5e74d424e3451dbb 512 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 206 221 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AMK58_14020 8adda5a1d2fb8e79eaa5253437002565 242 Gene3D G3DSA:1.25.40.590 36 174 3.6E-6 T 11-10-2018 IPR038522 Type IV / VI secretion system, DotU superfamily AMK58_13275 7c76331e2818ddca10323eb4704fb895 68 Pfam PF06945 Protein of unknown function (DUF1289) 16 63 5.2E-21 T 11-10-2018 IPR010710 Protein of unknown function DUF1289 AMK58_26005 300d37cca3b71947c034047451c3b67b 270 Gene3D G3DSA:3.30.465.10 58 174 1.5E-38 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AMK58_26005 300d37cca3b71947c034047451c3b67b 270 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 5 174 2.1E-46 T 11-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 AMK58_26005 300d37cca3b71947c034047451c3b67b 270 SUPERFAMILY SSF56176 5 174 2.51E-51 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMK58_26005 300d37cca3b71947c034047451c3b67b 270 Gene3D G3DSA:3.30.43.10 1 57 6.7E-19 T 11-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 AMK58_06020 f4e637185be07157b7340c8fd575ba22 138 Pfam PF13673 Acetyltransferase (GNAT) domain 40 132 1.7E-11 T 11-10-2018 IPR000182 GNAT domain AMK58_06020 f4e637185be07157b7340c8fd575ba22 138 SUPERFAMILY SSF55729 15 129 6.56E-16 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_06020 f4e637185be07157b7340c8fd575ba22 138 Gene3D G3DSA:3.40.630.30 11 136 8.4E-23 T 11-10-2018 AMK58_18865 a331b139543c8a0ed90270b8f72b6039 691 Gene3D G3DSA:3.55.50.10 103 194 9.3E-100 T 11-10-2018 AMK58_18865 a331b139543c8a0ed90270b8f72b6039 691 Pfam PF05954 Phage late control gene D protein (GPD) 31 328 8.3E-85 T 11-10-2018 AMK58_18865 a331b139543c8a0ed90270b8f72b6039 691 SUPERFAMILY SSF69255 354 442 9.94E-36 T 11-10-2018 AMK58_18865 a331b139543c8a0ed90270b8f72b6039 691 SUPERFAMILY SSF69279 13 189 9.35E-56 T 11-10-2018 AMK58_18865 a331b139543c8a0ed90270b8f72b6039 691 SUPERFAMILY SSF69349 432 626 1.33E-42 T 11-10-2018 AMK58_18865 a331b139543c8a0ed90270b8f72b6039 691 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 26 495 3.6E-128 T 11-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein AMK58_18865 a331b139543c8a0ed90270b8f72b6039 691 Gene3D G3DSA:3.30.1920.30 229 287 9.3E-100 T 11-10-2018 AMK58_18865 a331b139543c8a0ed90270b8f72b6039 691 Gene3D G3DSA:2.40.50.230 345 447 4.1E-46 T 11-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily AMK58_18865 a331b139543c8a0ed90270b8f72b6039 691 SUPERFAMILY SSF69279 200 349 6.46E-25 T 11-10-2018 AMK58_18865 a331b139543c8a0ed90270b8f72b6039 691 Gene3D G3DSA:2.30.110.50 16 328 9.3E-100 T 11-10-2018 AMK58_18865 a331b139543c8a0ed90270b8f72b6039 691 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 13 512 1.5E-178 T 11-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset AMK58_17880 8c73f556711c22fc25181472953b1ea7 134 Gene3D G3DSA:3.30.420.130 1 118 5.9E-12 T 11-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily AMK58_17880 8c73f556711c22fc25181472953b1ea7 134 SUPERFAMILY SSF53146 1 113 2.49E-17 T 11-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily AMK58_17880 8c73f556711c22fc25181472953b1ea7 134 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 13 100 3.2E-7 T 11-10-2018 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis AMK58_11475 21ab0cece84347ffb53971e46519a8c5 367 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 5 340 3.4E-89 T 11-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 AMK58_11475 21ab0cece84347ffb53971e46519a8c5 367 SUPERFAMILY SSF51395 2 363 2.04E-127 T 11-10-2018 AMK58_11475 21ab0cece84347ffb53971e46519a8c5 367 Gene3D G3DSA:3.20.20.70 4 367 2.8E-144 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_10285 9507fa40090f9b3253dc354404f2165b 446 Hamap MF_01465 Protein translocase subunit SecY [secY]. 14 437 29.467 T 11-10-2018 IPR026593 Protein translocase subunit SecY AMK58_10285 9507fa40090f9b3253dc354404f2165b 446 PIRSF PIRSF004557 11 445 4.3E-120 T 11-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMK58_10285 9507fa40090f9b3253dc354404f2165b 446 Gene3D G3DSA:1.10.3370.10 13 433 6.1E-160 T 11-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMK58_10285 9507fa40090f9b3253dc354404f2165b 446 ProSitePatterns PS00756 Protein secY signature 2. 178 195 - T 11-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMK58_10285 9507fa40090f9b3253dc354404f2165b 446 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 24 432 1.1E-127 T 11-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMK58_10285 9507fa40090f9b3253dc354404f2165b 446 PRINTS PR00303 Preprotein translocase SecY subunit signature 406 424 7.5E-96 T 11-10-2018 AMK58_10285 9507fa40090f9b3253dc354404f2165b 446 PRINTS PR00303 Preprotein translocase SecY subunit signature 120 143 7.5E-96 T 11-10-2018 AMK58_10285 9507fa40090f9b3253dc354404f2165b 446 PRINTS PR00303 Preprotein translocase SecY subunit signature 185 208 7.5E-96 T 11-10-2018 AMK58_10285 9507fa40090f9b3253dc354404f2165b 446 PRINTS PR00303 Preprotein translocase SecY subunit signature 27 45 7.5E-96 T 11-10-2018 AMK58_10285 9507fa40090f9b3253dc354404f2165b 446 PRINTS PR00303 Preprotein translocase SecY subunit signature 277 296 7.5E-96 T 11-10-2018 AMK58_10285 9507fa40090f9b3253dc354404f2165b 446 PRINTS PR00303 Preprotein translocase SecY subunit signature 319 341 7.5E-96 T 11-10-2018 AMK58_10285 9507fa40090f9b3253dc354404f2165b 446 PRINTS PR00303 Preprotein translocase SecY subunit signature 159 184 7.5E-96 T 11-10-2018 AMK58_10285 9507fa40090f9b3253dc354404f2165b 446 PRINTS PR00303 Preprotein translocase SecY subunit signature 374 392 7.5E-96 T 11-10-2018 AMK58_10285 9507fa40090f9b3253dc354404f2165b 446 PRINTS PR00303 Preprotein translocase SecY subunit signature 79 99 7.5E-96 T 11-10-2018 AMK58_10285 9507fa40090f9b3253dc354404f2165b 446 SUPERFAMILY SSF103491 17 428 2.62E-130 T 11-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMK58_10285 9507fa40090f9b3253dc354404f2165b 446 Pfam PF00344 SecY translocase 80 421 2.0E-116 T 11-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMK58_10285 9507fa40090f9b3253dc354404f2165b 446 ProSitePatterns PS00755 Protein secY signature 1. 80 99 - T 11-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMK58_25055 d2df3483222f6c1cf8b1f34ef955c463 365 Pfam PF09375 Imelysin 40 340 1.2E-40 T 11-10-2018 IPR018976 Imelysin-like domain AMK58_25055 d2df3483222f6c1cf8b1f34ef955c463 365 Gene3D G3DSA:1.20.1420.20 23 365 7.9E-77 T 11-10-2018 IPR038352 Imelysin-like domain superfamily AMK58_29210 33d704163564375f32fab61369d1a91c 1114 SUPERFAMILY SSF51120 962 1082 1.7E-18 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_29210 33d704163564375f32fab61369d1a91c 1114 Gene3D G3DSA:2.60.60.40 11 128 4.3E-6 T 11-10-2018 AMK58_29210 33d704163564375f32fab61369d1a91c 1114 Gene3D G3DSA:2.160.20.10 253 405 9.5E-16 T 11-10-2018 IPR012334 Pectin lyase fold AMK58_29210 33d704163564375f32fab61369d1a91c 1114 SUPERFAMILY SSF51126 261 855 4.58E-31 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor AMK58_29210 33d704163564375f32fab61369d1a91c 1114 Pfam PF05048 Periplasmic copper-binding protein (NosD) 506 672 1.5E-11 T 11-10-2018 IPR007742 Periplasmic copper-binding protein NosD, beta helix domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 AMK58_29210 33d704163564375f32fab61369d1a91c 1114 Gene3D G3DSA:2.160.20.10 486 838 9.8E-24 T 11-10-2018 IPR012334 Pectin lyase fold AMK58_29210 33d704163564375f32fab61369d1a91c 1114 Gene3D G3DSA:2.150.10.10 940 1094 2.1E-13 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_29210 33d704163564375f32fab61369d1a91c 1114 PRINTS PR00313 NodO calcium binding signature 996 1004 3.8E-6 T 11-10-2018 AMK58_29210 33d704163564375f32fab61369d1a91c 1114 PRINTS PR00313 NodO calcium binding signature 1014 1023 3.8E-6 T 11-10-2018 AMK58_29210 33d704163564375f32fab61369d1a91c 1114 PRINTS PR00313 NodO calcium binding signature 975 986 3.8E-6 T 11-10-2018 AMK58_29210 33d704163564375f32fab61369d1a91c 1114 PRINTS PR00313 NodO calcium binding signature 1005 1013 3.8E-6 T 11-10-2018 AMK58_29210 33d704163564375f32fab61369d1a91c 1114 SMART SM00710 684 721 21.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_29210 33d704163564375f32fab61369d1a91c 1114 SMART SM00710 595 622 350.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_29210 33d704163564375f32fab61369d1a91c 1114 SMART SM00710 523 545 290.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_29210 33d704163564375f32fab61369d1a91c 1114 SMART SM00710 548 569 660.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_29210 33d704163564375f32fab61369d1a91c 1114 SMART SM00710 723 745 710.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_29210 33d704163564375f32fab61369d1a91c 1114 SMART SM00710 623 645 5.9 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_29210 33d704163564375f32fab61369d1a91c 1114 SMART SM00710 571 593 110.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_29210 33d704163564375f32fab61369d1a91c 1114 SMART SM00710 652 679 950.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_29210 33d704163564375f32fab61369d1a91c 1114 Pfam PF16841 Ca-dependent carbohydrate-binding module xylan-binding 13 103 3.1E-29 T 11-10-2018 IPR031768 Carbohydrate binding module, xylan-binding domain MetaCyc: PWY-6717|MetaCyc: PWY-6784 AMK58_29210 33d704163564375f32fab61369d1a91c 1114 Pfam PF16841 Ca-dependent carbohydrate-binding module xylan-binding 155 239 8.7E-14 T 11-10-2018 IPR031768 Carbohydrate binding module, xylan-binding domain MetaCyc: PWY-6717|MetaCyc: PWY-6784 AMK58_20570 84c7730dd44b0f1184c599e9bef88210 303 Pfam PF01522 Polysaccharide deacetylase 73 237 3.0E-19 T 11-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMK58_20570 84c7730dd44b0f1184c599e9bef88210 303 SUPERFAMILY SSF88713 37 237 1.75E-27 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMK58_20570 84c7730dd44b0f1184c599e9bef88210 303 Gene3D G3DSA:3.20.20.370 21 273 1.6E-47 T 11-10-2018 AMK58_10845 0f08116863a474cc559ad5807c5153ba 130 Pfam PF05071 NADH ubiquinone oxidoreductase subunit NDUFA12 24 129 2.3E-25 T 11-10-2018 IPR007763 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 GO:0008137|GO:0009055|GO:0016020 Reactome: R-HSA-6799198 AMK58_14175 0d6e414fa0edaf3cb1bcf9da86bcd829 219 Gene3D G3DSA:1.10.3720.10 4 215 1.4E-45 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_14175 0d6e414fa0edaf3cb1bcf9da86bcd829 219 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 11 107 2.1E-24 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMK58_14175 0d6e414fa0edaf3cb1bcf9da86bcd829 219 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 46 196 1.3E-12 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_14175 0d6e414fa0edaf3cb1bcf9da86bcd829 219 SUPERFAMILY SSF161098 13 198 1.44E-38 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_06605 b52b55d36bfa68cc4062d36d42a56d63 339 Pfam PF09084 NMT1/THI5 like 44 254 3.4E-31 T 11-10-2018 IPR015168 SsuA/THI5-like AMK58_06605 b52b55d36bfa68cc4062d36d42a56d63 339 Gene3D G3DSA:3.40.190.10 33 330 8.9E-115 T 11-10-2018 AMK58_06605 b52b55d36bfa68cc4062d36d42a56d63 339 SUPERFAMILY SSF53850 29 277 1.17E-47 T 11-10-2018 AMK58_06605 b52b55d36bfa68cc4062d36d42a56d63 339 SMART SM00062 32 275 0.0042 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMK58_06605 b52b55d36bfa68cc4062d36d42a56d63 339 Gene3D G3DSA:3.40.190.10 112 221 8.9E-115 T 11-10-2018 AMK58_05765 f10b61dcbe6e2626b11f11c174a84d76 179 Pfam PF00994 Probable molybdopterin binding domain 10 154 4.6E-33 T 11-10-2018 IPR001453 MoaB/Mog domain AMK58_05765 f10b61dcbe6e2626b11f11c174a84d76 179 Gene3D G3DSA:3.40.980.10 2 179 2.8E-63 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily AMK58_05765 f10b61dcbe6e2626b11f11c174a84d76 179 SMART SM00852 10 156 4.7E-32 T 11-10-2018 IPR001453 MoaB/Mog domain AMK58_05765 f10b61dcbe6e2626b11f11c174a84d76 179 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 72 85 - T 11-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 AMK58_05765 f10b61dcbe6e2626b11f11c174a84d76 179 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 8 149 8.5E-41 T 11-10-2018 IPR001453 MoaB/Mog domain AMK58_05765 f10b61dcbe6e2626b11f11c174a84d76 179 SUPERFAMILY SSF53218 6 178 1.44E-49 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily AMK58_16890 10d08b3ef20e35d767d2d39cbaa63f84 125 SUPERFAMILY SSF64076 3 125 1.96E-40 T 11-10-2018 IPR036748 MTH938-like superfamily AMK58_16890 10d08b3ef20e35d767d2d39cbaa63f84 125 Pfam PF04430 Protein of unknown function (DUF498/DUF598) 15 123 1.9E-32 T 11-10-2018 IPR007523 NDUFAF3/Mth938 domain-containing protein AMK58_16890 10d08b3ef20e35d767d2d39cbaa63f84 125 Gene3D G3DSA:3.40.1230.10 9 125 1.8E-39 T 11-10-2018 IPR036748 MTH938-like superfamily AMK58_11070 d1f1ec46f89f581c9ba856494832cbe6 290 SUPERFAMILY SSF56436 1 287 6.22E-89 T 11-10-2018 IPR016187 C-type lectin fold AMK58_11070 d1f1ec46f89f581c9ba856494832cbe6 290 Gene3D G3DSA:3.90.1580.10 1 289 1.4E-102 T 11-10-2018 AMK58_11070 d1f1ec46f89f581c9ba856494832cbe6 290 Pfam PF03781 Sulfatase-modifying factor enzyme 1 1 286 4.0E-84 T 11-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 AMK58_06520 365f3a25b18feea42fe9d88613a935b5 508 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 140 156 - T 11-10-2018 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 Reactome: R-HSA-70921 AMK58_06520 365f3a25b18feea42fe9d88613a935b5 508 Hamap MF_00229 Histidine ammonia-lyase [hutH]. 4 505 43.844 T 11-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AMK58_06520 365f3a25b18feea42fe9d88613a935b5 508 Pfam PF00221 Aromatic amino acid lyase 12 471 2.9E-184 T 11-10-2018 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 AMK58_06520 365f3a25b18feea42fe9d88613a935b5 508 Gene3D G3DSA:1.10.275.10 3 198 2.0E-64 T 11-10-2018 IPR024083 Fumarase/histidase, N-terminal AMK58_06520 365f3a25b18feea42fe9d88613a935b5 508 TIGRFAM TIGR01225 hutH: histidine ammonia-lyase 6 501 3.9E-202 T 11-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AMK58_06520 365f3a25b18feea42fe9d88613a935b5 508 SUPERFAMILY SSF48557 2 500 6.51E-189 T 11-10-2018 IPR008948 L-Aspartase-like GO:0003824 AMK58_06520 365f3a25b18feea42fe9d88613a935b5 508 Gene3D G3DSA:1.20.200.10 199 506 2.1E-118 T 11-10-2018 AMK58_08250 2cfc7048a3815e6f38702b49f487019a 350 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 6 338 3.8E-99 T 11-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 AMK58_08250 2cfc7048a3815e6f38702b49f487019a 350 Pfam PF02504 Fatty acid synthesis protein 6 327 2.4E-108 T 11-10-2018 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 AMK58_08250 2cfc7048a3815e6f38702b49f487019a 350 Gene3D G3DSA:3.40.718.10 4 346 1.6E-123 T 11-10-2018 AMK58_08250 2cfc7048a3815e6f38702b49f487019a 350 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 341 144.47 T 11-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 AMK58_08250 2cfc7048a3815e6f38702b49f487019a 350 PIRSF PIRSF002465 3 340 3.1E-121 T 11-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 AMK58_08250 2cfc7048a3815e6f38702b49f487019a 350 SUPERFAMILY SSF53659 5 336 1.36E-103 T 11-10-2018 AMK58_02185 5035eba16d0901d3fdb2ced5fa4e0a8c 317 SUPERFAMILY SSF52833 23 133 3.0E-30 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_02185 5035eba16d0901d3fdb2ced5fa4e0a8c 317 Pfam PF00085 Thioredoxin 28 127 5.6E-23 T 11-10-2018 IPR013766 Thioredoxin domain GO:0045454 AMK58_02185 5035eba16d0901d3fdb2ced5fa4e0a8c 317 ProSitePatterns PS00194 Thioredoxin family active site. 46 64 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AMK58_02185 5035eba16d0901d3fdb2ced5fa4e0a8c 317 SUPERFAMILY SSF48452 143 290 1.98E-8 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_02185 5035eba16d0901d3fdb2ced5fa4e0a8c 317 Gene3D G3DSA:3.40.30.10 24 130 2.5E-26 T 11-10-2018 AMK58_02185 5035eba16d0901d3fdb2ced5fa4e0a8c 317 Gene3D G3DSA:1.25.40.10 143 228 1.7E-8 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_02185 5035eba16d0901d3fdb2ced5fa4e0a8c 317 Pfam PF14561 Tetratricopeptide repeat 227 316 7.9E-33 T 11-10-2018 AMK58_02185 5035eba16d0901d3fdb2ced5fa4e0a8c 317 Gene3D G3DSA:1.25.40.10 229 316 1.6E-28 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_02185 5035eba16d0901d3fdb2ced5fa4e0a8c 317 Pfam PF14559 Tetratricopeptide repeat 153 220 3.5E-10 T 11-10-2018 AMK58_11065 501d543f27e136572b834d6ff607c87d 345 Gene3D G3DSA:3.40.190.10 113 218 8.9E-55 T 11-10-2018 AMK58_11065 501d543f27e136572b834d6ff607c87d 345 Gene3D G3DSA:3.40.190.10 34 331 8.9E-55 T 11-10-2018 AMK58_11065 501d543f27e136572b834d6ff607c87d 345 Pfam PF09084 NMT1/THI5 like 43 248 1.6E-31 T 11-10-2018 IPR015168 SsuA/THI5-like AMK58_11065 501d543f27e136572b834d6ff607c87d 345 SUPERFAMILY SSF53850 32 263 1.62E-27 T 11-10-2018 AMK58_10360 2bc954fe6a04997d2550fbc9dc2fafbf 131 Gene3D G3DSA:3.90.470.10 3 131 5.4E-37 T 11-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 AMK58_10360 2bc954fe6a04997d2550fbc9dc2fafbf 131 SUPERFAMILY SSF54843 11 123 1.83E-35 T 11-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 AMK58_10360 2bc954fe6a04997d2550fbc9dc2fafbf 131 Pfam PF00237 Ribosomal protein L22p/L17e 20 119 6.1E-28 T 11-10-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 AMK58_10360 2bc954fe6a04997d2550fbc9dc2fafbf 131 ProSitePatterns PS00464 Ribosomal protein L22 signature. 95 119 - T 11-10-2018 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10360 2bc954fe6a04997d2550fbc9dc2fafbf 131 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 20 119 7.5E-27 T 11-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_10360 2bc954fe6a04997d2550fbc9dc2fafbf 131 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 13 122 23.121 T 11-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_08695 b061246647d0f110ce33dd877a349400 346 Pfam PF01734 Patatin-like phospholipase 11 168 6.7E-22 T 11-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 AMK58_08695 b061246647d0f110ce33dd877a349400 346 Gene3D G3DSA:3.40.1090.10 86 226 1.5E-15 T 11-10-2018 AMK58_08695 b061246647d0f110ce33dd877a349400 346 Gene3D G3DSA:3.40.1090.20 7 68 1.0E-7 T 11-10-2018 AMK58_08695 b061246647d0f110ce33dd877a349400 346 SUPERFAMILY SSF52151 5 329 1.49E-51 T 11-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase AMK58_14855 9ee96f43c8b2213e27e153956b19b08d 823 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 418 541 3.0E-17 T 11-10-2018 IPR000014 PAS domain AMK58_14855 9ee96f43c8b2213e27e153956b19b08d 823 Pfam PF13426 PAS domain 433 532 5.9E-8 T 11-10-2018 IPR000014 PAS domain AMK58_14855 9ee96f43c8b2213e27e153956b19b08d 823 PRINTS PR00344 Bacterial sensor protein C-terminal signature 794 807 1.3E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_14855 9ee96f43c8b2213e27e153956b19b08d 823 PRINTS PR00344 Bacterial sensor protein C-terminal signature 738 752 1.3E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_14855 9ee96f43c8b2213e27e153956b19b08d 823 PRINTS PR00344 Bacterial sensor protein C-terminal signature 769 787 1.3E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_14855 9ee96f43c8b2213e27e153956b19b08d 823 PRINTS PR00344 Bacterial sensor protein C-terminal signature 756 766 1.3E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_14855 9ee96f43c8b2213e27e153956b19b08d 823 Gene3D G3DSA:1.10.287.130 547 648 2.3E-20 T 11-10-2018 AMK58_14855 9ee96f43c8b2213e27e153956b19b08d 823 SUPERFAMILY SSF55874 650 810 2.36E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_14855 9ee96f43c8b2213e27e153956b19b08d 823 SMART SM00091 421 487 6.0E-7 T 11-10-2018 IPR000014 PAS domain AMK58_14855 9ee96f43c8b2213e27e153956b19b08d 823 Gene3D G3DSA:3.30.450.20 408 532 5.1E-19 T 11-10-2018 AMK58_14855 9ee96f43c8b2213e27e153956b19b08d 823 SUPERFAMILY SSF55785 406 532 1.55E-19 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_14855 9ee96f43c8b2213e27e153956b19b08d 823 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 699 808 1.5E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_14855 9ee96f43c8b2213e27e153956b19b08d 823 Gene3D G3DSA:3.30.565.10 656 813 1.4E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_14855 9ee96f43c8b2213e27e153956b19b08d 823 SMART SM00387 697 810 1.7E-24 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_08245 1472d3048fa099e6c32a7065a31ca6c5 323 Gene3D G3DSA:3.40.47.10 2 323 5.3E-129 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_08245 1472d3048fa099e6c32a7065a31ca6c5 323 SUPERFAMILY SSF53901 3 323 1.14E-73 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_08245 1472d3048fa099e6c32a7065a31ca6c5 323 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 3 323 71.075 T 11-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 AMK58_08245 1472d3048fa099e6c32a7065a31ca6c5 323 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 107 190 3.5E-31 T 11-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 AMK58_08245 1472d3048fa099e6c32a7065a31ca6c5 323 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 4 323 2.8E-128 T 11-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 AMK58_08245 1472d3048fa099e6c32a7065a31ca6c5 323 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 234 323 3.8E-38 T 11-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 AMK58_10805 b368c20f9df168fc18f27e3ba9fcd0d9 317 Gene3D G3DSA:3.40.50.10330 19 151 1.7E-32 T 11-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 AMK58_10805 b368c20f9df168fc18f27e3ba9fcd0d9 317 SMART SM00046 25 156 2.4E-12 T 11-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 AMK58_10805 b368c20f9df168fc18f27e3ba9fcd0d9 317 Pfam PF00781 Diacylglycerol kinase catalytic domain 25 150 3.5E-27 T 11-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 AMK58_10805 b368c20f9df168fc18f27e3ba9fcd0d9 317 Gene3D G3DSA:2.60.200.40 152 309 1.9E-34 T 11-10-2018 AMK58_10805 b368c20f9df168fc18f27e3ba9fcd0d9 317 SUPERFAMILY SSF111331 23 316 1.53E-66 T 11-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily AMK58_28055 a0422127ebce9c7c7f513f3ecc722e0f 478 Pfam PF00171 Aldehyde dehydrogenase family 22 474 6.8E-156 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMK58_28055 a0422127ebce9c7c7f513f3ecc722e0f 478 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 248 255 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AMK58_28055 a0422127ebce9c7c7f513f3ecc722e0f 478 SUPERFAMILY SSF53720 3 477 6.81E-148 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMK58_28055 a0422127ebce9c7c7f513f3ecc722e0f 478 Gene3D G3DSA:3.40.309.10 255 446 2.7E-156 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMK58_28055 a0422127ebce9c7c7f513f3ecc722e0f 478 Gene3D G3DSA:3.40.605.10 19 474 2.7E-156 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMK58_23245 8fad55ed48cffb58d6098e28a2afa923 535 Pfam PF01039 Carboxyl transferase domain 48 526 4.2E-150 T 11-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 AMK58_23245 8fad55ed48cffb58d6098e28a2afa923 535 SUPERFAMILY SSF52096 275 535 1.56E-86 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMK58_23245 8fad55ed48cffb58d6098e28a2afa923 535 SUPERFAMILY SSF52096 24 269 2.82E-69 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMK58_23245 8fad55ed48cffb58d6098e28a2afa923 535 Gene3D G3DSA:3.90.226.10 1 272 8.1E-99 T 11-10-2018 AMK58_23245 8fad55ed48cffb58d6098e28a2afa923 535 Gene3D G3DSA:3.90.226.10 273 535 1.4E-104 T 11-10-2018 AMK58_12815 eefef5cafdd9b81c83c6f038a3796b26 255 Pfam PF13386 Cytochrome C biogenesis protein transmembrane region 31 243 6.0E-43 T 11-10-2018 IPR039447 Urease accessory protein UreH-like, transmembrane domain AMK58_16490 b83ea2832293f085b6c9c6d0ee5a0fc9 346 SUPERFAMILY SSF46785 274 341 2.03E-13 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_16490 b83ea2832293f085b6c9c6d0ee5a0fc9 346 Pfam PF13463 Winged helix DNA-binding domain 274 331 5.3E-7 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_16490 b83ea2832293f085b6c9c6d0ee5a0fc9 346 Gene3D G3DSA:1.10.10.10 228 343 9.2E-15 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_16490 b83ea2832293f085b6c9c6d0ee5a0fc9 346 SUPERFAMILY SSF52172 32 150 8.4E-14 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_16490 b83ea2832293f085b6c9c6d0ee5a0fc9 346 SMART SM00448 32 144 7.9E-4 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_16490 b83ea2832293f085b6c9c6d0ee5a0fc9 346 Pfam PF00072 Response regulator receiver domain 34 144 3.2E-8 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_16490 b83ea2832293f085b6c9c6d0ee5a0fc9 346 Gene3D G3DSA:3.40.50.2300 31 155 2.6E-11 T 11-10-2018 AMK58_11145 001b36b4d14babb2165653c16e4c70ea 403 Gene3D G3DSA:3.40.47.10 8 241 1.0E-33 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_11145 001b36b4d14babb2165653c16e4c70ea 403 SMART SM00825 Beta-ketoacyl synthase 21 402 9.8E-10 T 11-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMK58_11145 001b36b4d14babb2165653c16e4c70ea 403 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 150 166 - T 11-10-2018 IPR018201 Beta-ketoacyl synthase, active site AMK58_11145 001b36b4d14babb2165653c16e4c70ea 403 SUPERFAMILY SSF53901 205 399 3.46E-46 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_11145 001b36b4d14babb2165653c16e4c70ea 403 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 72 231 2.1E-23 T 11-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal AMK58_11145 001b36b4d14babb2165653c16e4c70ea 403 SUPERFAMILY SSF53901 8 233 2.62E-36 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_11145 001b36b4d14babb2165653c16e4c70ea 403 Gene3D G3DSA:3.40.47.10 242 396 6.9E-41 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_11145 001b36b4d14babb2165653c16e4c70ea 403 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 238 336 2.7E-27 T 11-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal AMK58_09375 7cb2addcbcbd20bcf76cb303a755d0ba 284 SUPERFAMILY SSF56655 6 261 4.19E-80 T 11-10-2018 AMK58_09375 7cb2addcbcbd20bcf76cb303a755d0ba 284 Gene3D G3DSA:3.30.540.10 1 143 5.9E-54 T 11-10-2018 AMK58_09375 7cb2addcbcbd20bcf76cb303a755d0ba 284 Gene3D G3DSA:3.40.190.80 144 263 4.2E-33 T 11-10-2018 AMK58_09375 7cb2addcbcbd20bcf76cb303a755d0ba 284 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 84 97 - T 11-10-2018 IPR020583 Inositol monophosphatase, metal-binding site AMK58_09375 7cb2addcbcbd20bcf76cb303a755d0ba 284 PRINTS PR01959 SuhB family inositol monophosphatase signature 20 42 2.2E-25 T 11-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 AMK58_09375 7cb2addcbcbd20bcf76cb303a755d0ba 284 PRINTS PR01959 SuhB family inositol monophosphatase signature 107 126 2.2E-25 T 11-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 AMK58_09375 7cb2addcbcbd20bcf76cb303a755d0ba 284 PRINTS PR01959 SuhB family inositol monophosphatase signature 159 185 2.2E-25 T 11-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 AMK58_09375 7cb2addcbcbd20bcf76cb303a755d0ba 284 PRINTS PR01959 SuhB family inositol monophosphatase signature 201 213 2.2E-25 T 11-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 AMK58_09375 7cb2addcbcbd20bcf76cb303a755d0ba 284 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 214 228 - T 11-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 AMK58_09375 7cb2addcbcbd20bcf76cb303a755d0ba 284 Pfam PF00459 Inositol monophosphatase family 7 249 2.9E-61 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMK58_09375 7cb2addcbcbd20bcf76cb303a755d0ba 284 PRINTS PR00377 Inositol monophosphatase superfamily signature 133 156 1.4E-56 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMK58_09375 7cb2addcbcbd20bcf76cb303a755d0ba 284 PRINTS PR00377 Inositol monophosphatase superfamily signature 41 61 1.4E-56 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMK58_09375 7cb2addcbcbd20bcf76cb303a755d0ba 284 PRINTS PR00377 Inositol monophosphatase superfamily signature 63 79 1.4E-56 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMK58_09375 7cb2addcbcbd20bcf76cb303a755d0ba 284 PRINTS PR00377 Inositol monophosphatase superfamily signature 84 100 1.4E-56 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMK58_09375 7cb2addcbcbd20bcf76cb303a755d0ba 284 PRINTS PR00377 Inositol monophosphatase superfamily signature 180 201 1.4E-56 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMK58_09375 7cb2addcbcbd20bcf76cb303a755d0ba 284 PRINTS PR00377 Inositol monophosphatase superfamily signature 211 235 1.4E-56 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMK58_25570 d83dac43980e58c8d0cfb6fb51b28c96 304 Gene3D G3DSA:1.10.10.10 10 98 1.4E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_25570 d83dac43980e58c8d0cfb6fb51b28c96 304 SUPERFAMILY SSF53850 95 298 8.32E-41 T 11-10-2018 AMK58_25570 d83dac43980e58c8d0cfb6fb51b28c96 304 Gene3D G3DSA:3.40.190.10 106 291 4.3E-58 T 11-10-2018 AMK58_25570 d83dac43980e58c8d0cfb6fb51b28c96 304 Gene3D G3DSA:3.40.190.10 166 263 4.3E-58 T 11-10-2018 AMK58_25570 d83dac43980e58c8d0cfb6fb51b28c96 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 7.8E-11 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_25570 d83dac43980e58c8d0cfb6fb51b28c96 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 7.8E-11 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_25570 d83dac43980e58c8d0cfb6fb51b28c96 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 7.8E-11 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_25570 d83dac43980e58c8d0cfb6fb51b28c96 304 Pfam PF03466 LysR substrate binding domain 94 295 1.1E-39 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_25570 d83dac43980e58c8d0cfb6fb51b28c96 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 70 3.2E-23 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_25570 d83dac43980e58c8d0cfb6fb51b28c96 304 SUPERFAMILY SSF46785 6 116 6.63E-24 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_02675 6bab3fbb3391e64848096925400efb0e 131 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 21 124 2.6E-25 T 11-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 AMK58_02675 6bab3fbb3391e64848096925400efb0e 131 Gene3D G3DSA:1.20.1300.10 14 127 1.1E-27 T 11-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMK58_02675 6bab3fbb3391e64848096925400efb0e 131 SUPERFAMILY SSF81343 16 127 6.38E-29 T 11-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMK58_02675 6bab3fbb3391e64848096925400efb0e 131 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 9 116 2.7E-17 T 11-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMK58_13110 b1f43b94e4921c612ccd77c21fcdf8d5 333 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 292 309 2.1E-5 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMK58_13110 b1f43b94e4921c612ccd77c21fcdf8d5 333 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 309 329 2.1E-5 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMK58_13110 b1f43b94e4921c612ccd77c21fcdf8d5 333 SUPERFAMILY SSF46689 221 328 3.36E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_13110 b1f43b94e4921c612ccd77c21fcdf8d5 333 TIGRFAM TIGR02974 phageshock_pspF: psp operon transcriptional activator 8 326 7.3E-145 T 11-10-2018 IPR014317 Transcription activator PspF AMK58_13110 b1f43b94e4921c612ccd77c21fcdf8d5 333 SUPERFAMILY SSF52540 8 244 6.01E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_13110 b1f43b94e4921c612ccd77c21fcdf8d5 333 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 221 230 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site AMK58_13110 b1f43b94e4921c612ccd77c21fcdf8d5 333 SMART SM00382 28 170 6.8E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_13110 b1f43b94e4921c612ccd77c21fcdf8d5 333 Pfam PF02954 Bacterial regulatory protein, Fis family 286 325 1.4E-7 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMK58_13110 b1f43b94e4921c612ccd77c21fcdf8d5 333 Gene3D G3DSA:1.10.8.60 179 260 3.5E-21 T 11-10-2018 AMK58_13110 b1f43b94e4921c612ccd77c21fcdf8d5 333 Pfam PF00158 Sigma-54 interaction domain 8 169 2.7E-57 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AMK58_13110 b1f43b94e4921c612ccd77c21fcdf8d5 333 Gene3D G3DSA:1.10.10.60 277 329 2.0E-8 T 11-10-2018 AMK58_13110 b1f43b94e4921c612ccd77c21fcdf8d5 333 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 94 109 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AMK58_13110 b1f43b94e4921c612ccd77c21fcdf8d5 333 Gene3D G3DSA:3.40.50.300 2 178 6.6E-56 T 11-10-2018 AMK58_27615 4be682c7a55bc4b8d1d1ba599c6c5fd9 748 Pfam PF07715 TonB-dependent Receptor Plug Domain 106 200 4.3E-13 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain AMK58_27615 4be682c7a55bc4b8d1d1ba599c6c5fd9 748 Gene3D G3DSA:2.40.170.20 216 748 1.5E-95 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily AMK58_27615 4be682c7a55bc4b8d1d1ba599c6c5fd9 748 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 107 748 1.4E-95 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 AMK58_27615 4be682c7a55bc4b8d1d1ba599c6c5fd9 748 Gene3D G3DSA:2.170.130.10 88 211 9.8E-26 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily AMK58_27615 4be682c7a55bc4b8d1d1ba599c6c5fd9 748 Pfam PF00593 TonB dependent receptor 388 746 2.5E-42 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel AMK58_27615 4be682c7a55bc4b8d1d1ba599c6c5fd9 748 SUPERFAMILY SSF56935 71 748 4.33E-105 T 11-10-2018 AMK58_02270 a1500ce44f5bea21563325c455462898 357 SUPERFAMILY SSF50331 236 355 7.05E-29 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMK58_02270 a1500ce44f5bea21563325c455462898 357 Gene3D G3DSA:3.40.50.300 4 221 8.1E-62 T 11-10-2018 AMK58_02270 a1500ce44f5bea21563325c455462898 357 SUPERFAMILY SSF52540 4 243 1.5E-86 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_02270 a1500ce44f5bea21563325c455462898 357 Gene3D G3DSA:2.40.50.140 284 339 2.2E-31 T 11-10-2018 AMK58_02270 a1500ce44f5bea21563325c455462898 357 Gene3D G3DSA:2.40.50.940 222 348 2.2E-31 T 11-10-2018 AMK58_02270 a1500ce44f5bea21563325c455462898 357 Pfam PF08402 TOBE domain 277 347 2.1E-10 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMK58_02270 a1500ce44f5bea21563325c455462898 357 Pfam PF00005 ABC transporter 20 161 2.2E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_02270 a1500ce44f5bea21563325c455462898 357 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_02270 a1500ce44f5bea21563325c455462898 357 SMART SM00382 28 211 6.1E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_17255 5f3254a644084ea0bddae986bb719eeb 308 Pfam PF00892 EamA-like transporter family 25 150 1.3E-14 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_17255 5f3254a644084ea0bddae986bb719eeb 308 Pfam PF00892 EamA-like transporter family 162 296 1.1E-12 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_17255 5f3254a644084ea0bddae986bb719eeb 308 SUPERFAMILY SSF103481 206 298 9.55E-16 T 11-10-2018 AMK58_17255 5f3254a644084ea0bddae986bb719eeb 308 SUPERFAMILY SSF103481 56 151 9.81E-13 T 11-10-2018 AMK58_19505 20929743bf57671da4af3663552bcc08 264 SUPERFAMILY SSF52540 20 262 1.54E-42 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_19505 20929743bf57671da4af3663552bcc08 264 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 22 239 1.1E-13 T 11-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain AMK58_19505 20929743bf57671da4af3663552bcc08 264 Gene3D G3DSA:3.40.50.300 20 261 8.1E-48 T 11-10-2018 AMK58_19505 20929743bf57671da4af3663552bcc08 264 PIRSF PIRSF003092 8 264 1.3E-60 T 11-10-2018 IPR025501 ATP binding protein MinD AMK58_21145 271af135c6645392d259e3e2db0fdf36 463 TIGRFAM TIGR00937 2A51: chromate efflux transporter 31 434 1.5E-61 T 11-10-2018 IPR014047 Chromate transporter, long chain AMK58_21145 271af135c6645392d259e3e2db0fdf36 463 Pfam PF02417 Chromate transporter 260 454 2.5E-32 T 11-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 AMK58_21145 271af135c6645392d259e3e2db0fdf36 463 Pfam PF02417 Chromate transporter 23 186 2.1E-31 T 11-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 AMK58_21145 271af135c6645392d259e3e2db0fdf36 463 PIRSF PIRSF004810 3 461 3.3E-131 T 11-10-2018 IPR014047 Chromate transporter, long chain AMK58_03360 c91eff81721312202872246fcf42c863 303 Gene3D G3DSA:3.40.50.1820 54 301 2.7E-47 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_03360 c91eff81721312202872246fcf42c863 303 SUPERFAMILY SSF53474 59 301 1.31E-33 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_03360 c91eff81721312202872246fcf42c863 303 Pfam PF01738 Dienelactone hydrolase family 70 299 1.4E-16 T 11-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 AMK58_20465 a0292b6c22549a4d0f5c1c88099f4f96 221 SUPERFAMILY SSF161098 9 208 3.14E-48 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_20465 a0292b6c22549a4d0f5c1c88099f4f96 221 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 31 215 6.4E-26 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_20465 a0292b6c22549a4d0f5c1c88099f4f96 221 Gene3D G3DSA:1.10.3720.10 3 217 2.6E-54 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_23815 b3e6c90ce04576c0f4c98f5f10625c2a 264 Pfam PF11306 Protein of unknown function (DUF3108) 14 247 2.1E-17 T 11-10-2018 IPR021457 Protein of unknown function DUF3108 AMK58_21530 cc93805491525f8dd78d1856f716b475 702 Pfam PF00512 His Kinase A (phospho-acceptor) domain 456 518 7.1E-14 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_21530 cc93805491525f8dd78d1856f716b475 702 SUPERFAMILY SSF55874 512 679 2.88E-36 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_21530 cc93805491525f8dd78d1856f716b475 702 SMART SM00387 564 682 6.1E-33 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_21530 cc93805491525f8dd78d1856f716b475 702 Gene3D G3DSA:1.20.1480.50 328 418 1.7E-6 T 11-10-2018 AMK58_21530 cc93805491525f8dd78d1856f716b475 702 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 567 679 5.9E-20 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_21530 cc93805491525f8dd78d1856f716b475 702 Pfam PF17202 Single cache domain 3 221 332 1.0E-28 T 11-10-2018 IPR033463 Single cache domain 3 AMK58_21530 cc93805491525f8dd78d1856f716b475 702 SMART SM00388 454 521 6.1E-13 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_21530 cc93805491525f8dd78d1856f716b475 702 Gene3D G3DSA:3.30.565.10 524 687 1.2E-39 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_21530 cc93805491525f8dd78d1856f716b475 702 Gene3D G3DSA:1.10.287.130 431 516 6.0E-22 T 11-10-2018 AMK58_21530 cc93805491525f8dd78d1856f716b475 702 Pfam PF00672 HAMP domain 359 407 2.1E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_21530 cc93805491525f8dd78d1856f716b475 702 PRINTS PR00344 Bacterial sensor protein C-terminal signature 642 660 4.7E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_21530 cc93805491525f8dd78d1856f716b475 702 PRINTS PR00344 Bacterial sensor protein C-terminal signature 666 679 4.7E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_21530 cc93805491525f8dd78d1856f716b475 702 PRINTS PR00344 Bacterial sensor protein C-terminal signature 630 640 4.7E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_21530 cc93805491525f8dd78d1856f716b475 702 PRINTS PR00344 Bacterial sensor protein C-terminal signature 612 626 4.7E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_21530 cc93805491525f8dd78d1856f716b475 702 SUPERFAMILY SSF47384 449 518 1.16E-11 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_21530 cc93805491525f8dd78d1856f716b475 702 SMART SM00304 359 412 2.7E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_21530 cc93805491525f8dd78d1856f716b475 702 SUPERFAMILY SSF158472 359 407 3.27E-7 T 11-10-2018 AMK58_21530 cc93805491525f8dd78d1856f716b475 702 SUPERFAMILY SSF103190 183 324 2.51E-13 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily AMK58_02200 da9141f47c9f0b6f3fc1da3249034b7d 134 Pfam PF06155 Protein of unknown function (DUF971) 20 104 7.1E-28 T 11-10-2018 IPR010376 Gamma-butyrobetaine hydroxylase-like, N-terminal Reactome: R-HSA-71262 AMK58_02200 da9141f47c9f0b6f3fc1da3249034b7d 134 Gene3D G3DSA:3.30.2020.30 10 109 5.8E-27 T 11-10-2018 IPR038492 GBBH-like, N-terminal domain superfamily Reactome: R-HSA-71262 AMK58_04735 826e4ab445241df1a0886f6839039415 177 Gene3D G3DSA:1.25.40.10 20 171 1.6E-5 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_12285 e78a1fd532508a074780de7935cce0c9 342 Gene3D G3DSA:1.10.1610.10 22 329 3.1E-106 T 11-10-2018 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 AMK58_12285 e78a1fd532508a074780de7935cce0c9 342 Gene3D G3DSA:3.40.50.10210 66 320 3.1E-106 T 11-10-2018 AMK58_12285 e78a1fd532508a074780de7935cce0c9 342 SUPERFAMILY SSF52733 15 338 9.16E-112 T 11-10-2018 IPR036087 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like superfamily GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 AMK58_12285 e78a1fd532508a074780de7935cce0c9 342 Hamap MF_00230 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [cobT]. 22 339 34.36 T 11-10-2018 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 AMK58_12285 e78a1fd532508a074780de7935cce0c9 342 Pfam PF02277 Phosphoribosyltransferase 22 337 9.6E-116 T 11-10-2018 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 AMK58_12285 e78a1fd532508a074780de7935cce0c9 342 TIGRFAM TIGR03160 cobT_DBIPRT: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 25 337 3.7E-119 T 11-10-2018 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 AMK58_00250 dfc13cd6ecb3e3922ed7e437ebd5df51 332 Gene3D G3DSA:1.10.3720.10 93 321 1.2E-13 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_00250 dfc13cd6ecb3e3922ed7e437ebd5df51 332 SUPERFAMILY SSF161098 100 308 9.37E-12 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_00250 dfc13cd6ecb3e3922ed7e437ebd5df51 332 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 120 325 1.9E-27 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_26355 932bef20862209c235fa6b8790ae3556 333 SUPERFAMILY SSF53756 20 332 4.32E-45 T 11-10-2018 AMK58_26355 932bef20862209c235fa6b8790ae3556 333 Gene3D G3DSA:3.40.50.2000 166 333 1.7E-21 T 11-10-2018 AMK58_26355 932bef20862209c235fa6b8790ae3556 333 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 137 305 5.2E-14 T 11-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 AMK58_26355 932bef20862209c235fa6b8790ae3556 333 Gene3D G3DSA:3.40.50.2000 16 155 1.8E-9 T 11-10-2018 AMK58_23795 bbf05fe66e7d71c466446cf03a2ffff0 144 Gene3D G3DSA:3.40.50.2300 22 144 9.9E-33 T 11-10-2018 AMK58_23795 bbf05fe66e7d71c466446cf03a2ffff0 144 Pfam PF00072 Response regulator receiver domain 27 137 4.4E-20 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_23795 bbf05fe66e7d71c466446cf03a2ffff0 144 SUPERFAMILY SSF52172 23 141 1.57E-30 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_23795 bbf05fe66e7d71c466446cf03a2ffff0 144 SMART SM00448 25 137 3.6E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_26465 02b9694ba3aaefa6e48e27054b9d6994 373 SUPERFAMILY SSF47384 2 77 1.43E-14 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_26465 02b9694ba3aaefa6e48e27054b9d6994 373 SUPERFAMILY SSF52172 254 369 5.27E-19 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_26465 02b9694ba3aaefa6e48e27054b9d6994 373 Pfam PF00072 Response regulator receiver domain 254 365 4.5E-11 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_26465 02b9694ba3aaefa6e48e27054b9d6994 373 SMART SM00388 12 77 7.0E-13 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_26465 02b9694ba3aaefa6e48e27054b9d6994 373 Gene3D G3DSA:3.30.565.10 83 236 3.6E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_26465 02b9694ba3aaefa6e48e27054b9d6994 373 SUPERFAMILY SSF55874 66 231 2.75E-39 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_26465 02b9694ba3aaefa6e48e27054b9d6994 373 SMART SM00448 251 365 7.1E-11 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_26465 02b9694ba3aaefa6e48e27054b9d6994 373 Gene3D G3DSA:3.40.50.2300 251 372 3.2E-19 T 11-10-2018 AMK58_26465 02b9694ba3aaefa6e48e27054b9d6994 373 Gene3D G3DSA:1.10.287.130 1 79 1.1E-16 T 11-10-2018 AMK58_26465 02b9694ba3aaefa6e48e27054b9d6994 373 SMART SM00387 122 233 1.3E-27 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_26465 02b9694ba3aaefa6e48e27054b9d6994 373 Pfam PF00512 His Kinase A (phospho-acceptor) domain 12 77 2.0E-12 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_26465 02b9694ba3aaefa6e48e27054b9d6994 373 PRINTS PR00344 Bacterial sensor protein C-terminal signature 176 186 1.3E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_26465 02b9694ba3aaefa6e48e27054b9d6994 373 PRINTS PR00344 Bacterial sensor protein C-terminal signature 158 172 1.3E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_26465 02b9694ba3aaefa6e48e27054b9d6994 373 PRINTS PR00344 Bacterial sensor protein C-terminal signature 217 230 1.3E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_26465 02b9694ba3aaefa6e48e27054b9d6994 373 PRINTS PR00344 Bacterial sensor protein C-terminal signature 193 211 1.3E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_26465 02b9694ba3aaefa6e48e27054b9d6994 373 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 123 232 1.4E-21 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_10725 b19d04639a16cd1fab97c5ce6a13e78f 203 Gene3D G3DSA:3.40.50.1000 5 201 8.8E-38 T 11-10-2018 IPR023214 HAD superfamily AMK58_10725 b19d04639a16cd1fab97c5ce6a13e78f 203 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 78 183 1.0E-14 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMK58_10725 b19d04639a16cd1fab97c5ce6a13e78f 203 SUPERFAMILY SSF56784 6 198 3.83E-40 T 11-10-2018 IPR036412 HAD-like superfamily AMK58_10725 b19d04639a16cd1fab97c5ce6a13e78f 203 Pfam PF13419 Haloacid dehalogenase-like hydrolase 54 184 7.5E-16 T 11-10-2018 AMK58_10725 b19d04639a16cd1fab97c5ce6a13e78f 203 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 103 181 7.3E-6 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMK58_10725 b19d04639a16cd1fab97c5ce6a13e78f 203 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 131 147 4.1E-8 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMK58_10725 b19d04639a16cd1fab97c5ce6a13e78f 203 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 100 113 4.1E-8 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMK58_10725 b19d04639a16cd1fab97c5ce6a13e78f 203 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 149 169 4.1E-8 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMK58_10725 b19d04639a16cd1fab97c5ce6a13e78f 203 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 4 15 4.1E-8 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMK58_23540 0d03222c55278abd1df92c5a21994caa 543 SUPERFAMILY SSF53383 134 511 1.46E-40 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_23540 0d03222c55278abd1df92c5a21994caa 543 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 312 325 - T 11-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 AMK58_23540 0d03222c55278abd1df92c5a21994caa 543 Gene3D G3DSA:1.10.20.110 38 404 2.6E-211 T 11-10-2018 AMK58_23540 0d03222c55278abd1df92c5a21994caa 543 TIGRFAM TIGR03801 asp_4_decarbox: aspartate 4-decarboxylase 12 526 3.4E-235 T 11-10-2018 IPR022518 Aspartate 4-decarboxylase KEGG: 00220+2.6.1.1|KEGG: 00250+4.1.1.12+2.6.1.1|KEGG: 00270+4.1.1.12+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 AMK58_23540 0d03222c55278abd1df92c5a21994caa 543 Gene3D G3DSA:3.40.640.10 162 382 2.6E-211 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_23540 0d03222c55278abd1df92c5a21994caa 543 Pfam PF00155 Aminotransferase class I and II 191 508 4.6E-20 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMK58_23540 0d03222c55278abd1df92c5a21994caa 543 Gene3D G3DSA:3.90.1150.10 31 524 2.6E-211 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_04580 283e87e45ee29f9a0357ac8e235eaef8 401 Gene3D G3DSA:3.40.640.10 64 238 3.1E-142 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_04580 283e87e45ee29f9a0357ac8e235eaef8 401 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 196 215 - T 11-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site AMK58_04580 283e87e45ee29f9a0357ac8e235eaef8 401 TIGRFAM TIGR03402 FeS_nifS: cysteine desulfurase NifS 6 386 3.1E-188 T 11-10-2018 IPR017772 Cysteine desulfurase NifS, bacterial/archaeal GO:0006520|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 AMK58_04580 283e87e45ee29f9a0357ac8e235eaef8 401 Gene3D G3DSA:1.10.260.50 17 282 3.1E-142 T 11-10-2018 AMK58_04580 283e87e45ee29f9a0357ac8e235eaef8 401 Gene3D G3DSA:3.90.1150.10 6 372 3.1E-142 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_04580 283e87e45ee29f9a0357ac8e235eaef8 401 SUPERFAMILY SSF53383 6 378 3.19E-102 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_04580 283e87e45ee29f9a0357ac8e235eaef8 401 PIRSF PIRSF005572 3 384 1.1E-130 T 11-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 AMK58_04580 283e87e45ee29f9a0357ac8e235eaef8 401 Pfam PF00266 Aminotransferase class-V 6 369 1.3E-90 T 11-10-2018 IPR000192 Aminotransferase class V domain AMK58_20575 7187ccceeed6927fee14ba5e13ee6339 98 SUPERFAMILY SSF47336 18 92 1.27E-10 T 11-10-2018 IPR036736 ACP-like superfamily AMK58_20575 7187ccceeed6927fee14ba5e13ee6339 98 Pfam PF00550 Phosphopantetheine attachment site 32 88 1.9E-5 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain AMK58_20575 7187ccceeed6927fee14ba5e13ee6339 98 Gene3D G3DSA:1.10.1200.10 14 95 3.5E-23 T 11-10-2018 IPR036736 ACP-like superfamily AMK58_19440 35d500173552cae3ae25d0203c469232 161 Pfam PF13411 MerR HTH family regulatory protein 30 93 5.7E-17 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMK58_19440 35d500173552cae3ae25d0203c469232 161 SMART SM00422 29 96 2.4E-21 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMK58_19440 35d500173552cae3ae25d0203c469232 161 SUPERFAMILY SSF46955 29 138 1.25E-25 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily AMK58_19440 35d500173552cae3ae25d0203c469232 161 Gene3D G3DSA:1.10.1660.10 25 146 1.8E-27 T 11-10-2018 AMK58_28780 43a46366a9aec3a9749590fc574b6cce 169 Pfam PF13524 Glycosyl transferases group 1 53 133 2.8E-13 T 11-10-2018 AMK58_19900 9843d61957d2ba502504f1de48347131 128 Pfam PF13467 Ribbon-helix-helix domain 21 92 8.0E-20 T 11-10-2018 IPR027373 Ribbon-helix-helix domain AMK58_19900 9843d61957d2ba502504f1de48347131 128 Gene3D G3DSA:1.10.3990.20 18 108 1.5E-14 T 11-10-2018 IPR038268 Ribbon-helix-helix domain superfamily AMK58_25605 c181b3ad51c2589f88c43bbea13bb640 555 PRINTS PR00344 Bacterial sensor protein C-terminal signature 370 388 2.1E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_25605 c181b3ad51c2589f88c43bbea13bb640 555 PRINTS PR00344 Bacterial sensor protein C-terminal signature 339 353 2.1E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_25605 c181b3ad51c2589f88c43bbea13bb640 555 PRINTS PR00344 Bacterial sensor protein C-terminal signature 357 367 2.1E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_25605 c181b3ad51c2589f88c43bbea13bb640 555 PRINTS PR00344 Bacterial sensor protein C-terminal signature 394 407 2.1E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_25605 c181b3ad51c2589f88c43bbea13bb640 555 SUPERFAMILY SSF47384 172 243 9.61E-9 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_25605 c181b3ad51c2589f88c43bbea13bb640 555 Gene3D G3DSA:3.30.565.10 248 413 3.8E-38 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_25605 c181b3ad51c2589f88c43bbea13bb640 555 Pfam PF00512 His Kinase A (phospho-acceptor) domain 181 244 2.1E-7 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_25605 c181b3ad51c2589f88c43bbea13bb640 555 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 288 408 1.7E-15 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_25605 c181b3ad51c2589f88c43bbea13bb640 555 SUPERFAMILY SSF55874 237 408 5.5E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_25605 c181b3ad51c2589f88c43bbea13bb640 555 Gene3D G3DSA:3.40.50.2300 431 554 2.9E-23 T 11-10-2018 AMK58_25605 c181b3ad51c2589f88c43bbea13bb640 555 SUPERFAMILY SSF52172 2 170 5.62E-7 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_25605 c181b3ad51c2589f88c43bbea13bb640 555 Gene3D G3DSA:1.10.287.130 172 244 1.3E-19 T 11-10-2018 AMK58_25605 c181b3ad51c2589f88c43bbea13bb640 555 Pfam PF00072 Response regulator receiver domain 436 544 5.8E-16 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_25605 c181b3ad51c2589f88c43bbea13bb640 555 SMART SM00388 180 246 2.8E-5 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_25605 c181b3ad51c2589f88c43bbea13bb640 555 SUPERFAMILY SSF52172 433 551 3.7E-25 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_25605 c181b3ad51c2589f88c43bbea13bb640 555 SMART SM00448 434 546 2.5E-14 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_25605 c181b3ad51c2589f88c43bbea13bb640 555 SMART SM00387 287 410 1.6E-23 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_29165 d8eec9696fa8efd7083575f2bdcd1d3d 222 Pfam PF03737 Aldolase/RraA 25 172 3.6E-43 T 11-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein AMK58_29165 d8eec9696fa8efd7083575f2bdcd1d3d 222 SUPERFAMILY SSF89562 21 182 6.54E-51 T 11-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily AMK58_29165 d8eec9696fa8efd7083575f2bdcd1d3d 222 Gene3D G3DSA:3.50.30.100 1 194 1.7E-57 T 11-10-2018 AMK58_01140 06bdd37d99d75398355c248b8a9a14e4 132 Gene3D G3DSA:3.40.50.2300 16 132 2.4E-6 T 11-10-2018 AMK58_01140 06bdd37d99d75398355c248b8a9a14e4 132 SUPERFAMILY SSF52172 17 125 3.13E-8 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_15985 fbe5a3ca7ed1766d804ce1d6940969e2 535 Gene3D G3DSA:1.40.20.10 238 533 2.7E-57 T 11-10-2018 IPR038186 CHAD domain superfamily AMK58_15985 fbe5a3ca7ed1766d804ce1d6940969e2 535 Pfam PF05235 CHAD domain 257 490 2.5E-40 T 11-10-2018 IPR007899 CHAD domain AMK58_15985 fbe5a3ca7ed1766d804ce1d6940969e2 535 SMART SM01118 24 230 1.1E-18 T 11-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 AMK58_15985 fbe5a3ca7ed1766d804ce1d6940969e2 535 Pfam PF01928 CYTH domain 25 218 4.7E-17 T 11-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 AMK58_15985 fbe5a3ca7ed1766d804ce1d6940969e2 535 SMART SM00880 255 523 4.8E-45 T 11-10-2018 IPR007899 CHAD domain AMK58_15985 fbe5a3ca7ed1766d804ce1d6940969e2 535 Gene3D G3DSA:2.40.320.10 21 223 5.5E-24 T 11-10-2018 AMK58_15985 fbe5a3ca7ed1766d804ce1d6940969e2 535 SUPERFAMILY SSF55154 23 244 2.29E-31 T 11-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 AMK58_10860 3e2468d16f2252f6a4514fae90cfa593 63 SUPERFAMILY SSF160113 7 54 1.31E-13 T 11-10-2018 IPR036913 YegP-like superfamily AMK58_10860 3e2468d16f2252f6a4514fae90cfa593 63 Pfam PF07411 Domain of unknown function (DUF1508) 15 53 1.9E-12 T 11-10-2018 IPR010879 Domain of unknown function DUF1508 AMK58_10860 3e2468d16f2252f6a4514fae90cfa593 63 Gene3D G3DSA:3.30.160.160 8 54 9.1E-19 T 11-10-2018 AMK58_05640 fa9671565f4ac4b24c6065a5f9a28967 235 Gene3D G3DSA:3.40.50.300 1 234 1.1E-57 T 11-10-2018 AMK58_05640 fa9671565f4ac4b24c6065a5f9a28967 235 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_05640 fa9671565f4ac4b24c6065a5f9a28967 235 SMART SM00382 30 213 3.1E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_05640 fa9671565f4ac4b24c6065a5f9a28967 235 SUPERFAMILY SSF52540 3 225 9.67E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_05640 fa9671565f4ac4b24c6065a5f9a28967 235 Pfam PF00005 ABC transporter 22 164 2.4E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_06375 083d20af17702b482f744391a475dce7 164 Gene3D G3DSA:3.30.70.640 7 164 4.9E-71 T 11-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMK58_06375 083d20af17702b482f744391a475dce7 164 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 9 157 8.1E-66 T 11-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMK58_06375 083d20af17702b482f744391a475dce7 164 SUPERFAMILY SSF55040 16 160 1.96E-62 T 11-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMK58_06375 083d20af17702b482f744391a475dce7 164 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase [moaC]. 7 163 37.592 T 11-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMK58_06375 083d20af17702b482f744391a475dce7 164 Pfam PF01967 MoaC family 20 155 4.9E-57 T 11-10-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMK58_16940 97273b42ff18379cfd2da3e9176788b5 950 ProSitePatterns PS00211 ABC transporters family signature. 488 502 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_16940 97273b42ff18379cfd2da3e9176788b5 950 Gene3D G3DSA:3.40.50.300 7 595 8.7E-250 T 11-10-2018 AMK58_16940 97273b42ff18379cfd2da3e9176788b5 950 Hamap MF_00205 UvrABC system protein A [uvrA]. 2 940 22.828 T 11-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 AMK58_16940 97273b42ff18379cfd2da3e9176788b5 950 Gene3D G3DSA:3.30.190.20 131 243 8.7E-250 T 11-10-2018 AMK58_16940 97273b42ff18379cfd2da3e9176788b5 950 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 572 586 1.3E-4 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AMK58_16940 97273b42ff18379cfd2da3e9176788b5 950 Gene3D G3DSA:3.40.50.300 614 936 3.6E-141 T 11-10-2018 AMK58_16940 97273b42ff18379cfd2da3e9176788b5 950 Gene3D G3DSA:1.10.8.280 286 402 8.7E-250 T 11-10-2018 AMK58_16940 97273b42ff18379cfd2da3e9176788b5 950 SUPERFAMILY SSF52540 4 570 7.19E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_16940 97273b42ff18379cfd2da3e9176788b5 950 ProSitePatterns PS00211 ABC transporters family signature. 830 844 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_16940 97273b42ff18379cfd2da3e9176788b5 950 Gene3D G3DSA:1.20.1580.10 91 493 8.7E-250 T 11-10-2018 AMK58_16940 97273b42ff18379cfd2da3e9176788b5 950 SUPERFAMILY SSF52540 618 913 1.05E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_16940 97273b42ff18379cfd2da3e9176788b5 950 Gene3D G3DSA:1.20.1580.10 693 830 3.6E-141 T 11-10-2018 AMK58_16940 97273b42ff18379cfd2da3e9176788b5 950 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 5 924 0.0 T 11-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 AMK58_26635 f927581ddddb1120e2d1a661583cfca1 416 Hamap MF_00742 Formyl-CoA:oxalate CoA-transferase [frc]. 1 416 62.903 T 11-10-2018 IPR017659 Formyl-CoA:oxalate CoA-transferase GO:0033608 MetaCyc: PWY-6695 AMK58_26635 f927581ddddb1120e2d1a661583cfca1 416 Gene3D G3DSA:3.30.1540.10 243 339 4.6E-155 T 11-10-2018 AMK58_26635 f927581ddddb1120e2d1a661583cfca1 416 Pfam PF02515 CoA-transferase family III 5 392 9.7E-92 T 11-10-2018 IPR003673 CoA-transferase family III GO:0003824 AMK58_26635 f927581ddddb1120e2d1a661583cfca1 416 Gene3D G3DSA:3.40.50.10540 4 408 4.6E-155 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily AMK58_26635 f927581ddddb1120e2d1a661583cfca1 416 SUPERFAMILY SSF89796 1 416 4.06E-121 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily AMK58_26635 f927581ddddb1120e2d1a661583cfca1 416 TIGRFAM TIGR03253 oxalate_frc: formyl-CoA transferase 3 416 2.8E-218 T 11-10-2018 IPR017659 Formyl-CoA:oxalate CoA-transferase GO:0033608 MetaCyc: PWY-6695 AMK58_24065 bb18863f7e44bae4ee31f36a79e43836 395 TIGRFAM TIGR00016 ackA: acetate kinase 8 384 3.6E-96 T 11-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMK58_24065 bb18863f7e44bae4ee31f36a79e43836 395 Gene3D G3DSA:3.30.420.40 7 195 5.7E-58 T 11-10-2018 AMK58_24065 bb18863f7e44bae4ee31f36a79e43836 395 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 10 21 - T 11-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMK58_24065 bb18863f7e44bae4ee31f36a79e43836 395 SUPERFAMILY SSF53067 9 195 1.13E-56 T 11-10-2018 AMK58_24065 bb18863f7e44bae4ee31f36a79e43836 395 Hamap MF_00020 Acetate kinase [ackA]. 1 392 148.813 T 11-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMK58_24065 bb18863f7e44bae4ee31f36a79e43836 395 PRINTS PR00471 Acetate kinase family signature 318 334 1.5E-37 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMK58_24065 bb18863f7e44bae4ee31f36a79e43836 395 PRINTS PR00471 Acetate kinase family signature 370 382 1.5E-37 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMK58_24065 bb18863f7e44bae4ee31f36a79e43836 395 PRINTS PR00471 Acetate kinase family signature 296 309 1.5E-37 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMK58_24065 bb18863f7e44bae4ee31f36a79e43836 395 PRINTS PR00471 Acetate kinase family signature 174 187 1.5E-37 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMK58_24065 bb18863f7e44bae4ee31f36a79e43836 395 PRINTS PR00471 Acetate kinase family signature 10 21 1.5E-37 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMK58_24065 bb18863f7e44bae4ee31f36a79e43836 395 PRINTS PR00471 Acetate kinase family signature 203 224 1.5E-37 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMK58_24065 bb18863f7e44bae4ee31f36a79e43836 395 Pfam PF00871 Acetokinase family 10 382 1.1E-97 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMK58_24065 bb18863f7e44bae4ee31f36a79e43836 395 Gene3D G3DSA:3.30.420.40 199 395 7.0E-69 T 11-10-2018 AMK58_24065 bb18863f7e44bae4ee31f36a79e43836 395 SUPERFAMILY SSF53067 159 389 1.73E-74 T 11-10-2018 AMK58_24065 bb18863f7e44bae4ee31f36a79e43836 395 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 203 220 - T 11-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMK58_24065 bb18863f7e44bae4ee31f36a79e43836 395 PIRSF PIRSF000722 6 393 2.2E-127 T 11-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMK58_04740 280517e9423afbc13d4980a4224e7dad 63 Pfam PF00037 4Fe-4S binding domain 4 26 9.6E-8 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMK58_04740 280517e9423afbc13d4980a4224e7dad 63 Gene3D G3DSA:3.30.70.20 2 63 1.1E-19 T 11-10-2018 AMK58_04740 280517e9423afbc13d4980a4224e7dad 63 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 10 21 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMK58_04740 280517e9423afbc13d4980a4224e7dad 63 SUPERFAMILY SSF54862 5 61 9.27E-14 T 11-10-2018 AMK58_12385 2dd1d932c1d8ba3a501b2045a63340d7 650 SMART SM00710 363 390 2000.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_12385 2dd1d932c1d8ba3a501b2045a63340d7 650 SMART SM00710 391 413 13.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_12385 2dd1d932c1d8ba3a501b2045a63340d7 650 SMART SM00710 452 489 5000.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_12385 2dd1d932c1d8ba3a501b2045a63340d7 650 SMART SM00710 317 338 930.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_12385 2dd1d932c1d8ba3a501b2045a63340d7 650 SMART SM00710 339 361 700.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_12385 2dd1d932c1d8ba3a501b2045a63340d7 650 SMART SM00710 491 513 2400.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_12385 2dd1d932c1d8ba3a501b2045a63340d7 650 SMART SM00710 573 594 6200.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_12385 2dd1d932c1d8ba3a501b2045a63340d7 650 SMART SM00710 420 447 2500.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_12385 2dd1d932c1d8ba3a501b2045a63340d7 650 SUPERFAMILY SSF51126 16 637 9.53E-36 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor AMK58_12385 2dd1d932c1d8ba3a501b2045a63340d7 650 Gene3D G3DSA:2.160.20.10 273 610 3.5E-24 T 11-10-2018 IPR012334 Pectin lyase fold AMK58_12385 2dd1d932c1d8ba3a501b2045a63340d7 650 Gene3D G3DSA:2.160.20.10 23 148 1.1E-10 T 11-10-2018 IPR012334 Pectin lyase fold AMK58_12385 2dd1d932c1d8ba3a501b2045a63340d7 650 Pfam PF13229 Right handed beta helix region 290 429 3.2E-13 T 11-10-2018 IPR039448 Right handed beta helix domain AMK58_06840 b9abc830c3a942156be37b9ebfa2e7bb 411 Pfam PF00589 Phage integrase family 226 378 1.1E-13 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMK58_06840 b9abc830c3a942156be37b9ebfa2e7bb 411 Gene3D G3DSA:1.10.150.130 107 209 1.6E-11 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal AMK58_06840 b9abc830c3a942156be37b9ebfa2e7bb 411 Gene3D G3DSA:1.10.443.10 219 394 1.5E-23 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMK58_06840 b9abc830c3a942156be37b9ebfa2e7bb 411 SUPERFAMILY SSF56349 108 389 7.95E-41 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMK58_15600 712aad4f0b08c45277a9d91868cfdac4 282 Pfam PF00561 alpha/beta hydrolase fold 29 133 1.2E-18 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_15600 712aad4f0b08c45277a9d91868cfdac4 282 Gene3D G3DSA:3.40.50.1820 7 280 3.0E-83 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_15600 712aad4f0b08c45277a9d91868cfdac4 282 SUPERFAMILY SSF53474 4 280 1.59E-69 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_15600 712aad4f0b08c45277a9d91868cfdac4 282 PRINTS PR00412 Epoxide hydrolase signature 98 111 4.5E-11 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMK58_15600 712aad4f0b08c45277a9d91868cfdac4 282 PRINTS PR00412 Epoxide hydrolase signature 256 278 4.5E-11 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMK58_15600 712aad4f0b08c45277a9d91868cfdac4 282 PRINTS PR00412 Epoxide hydrolase signature 35 53 4.5E-11 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMK58_16130 4e1d9c6c064e36f61cc5e1ef9efaf2b4 194 Pfam PF09370 Phosphoenolpyruvate hydrolase-like 6 135 3.8E-22 T 11-10-2018 IPR009215 TIM-barrel domain, IGPS-like AMK58_16130 4e1d9c6c064e36f61cc5e1ef9efaf2b4 194 Gene3D G3DSA:3.20.20.70 2 178 3.1E-29 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_16130 4e1d9c6c064e36f61cc5e1ef9efaf2b4 194 SUPERFAMILY SSF51621 4 134 1.07E-21 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMK58_26765 a8ed377c614eb52c079824a858d05451 226 Gene3D G3DSA:1.10.1760.20 1 211 3.7E-8 T 11-10-2018 AMK58_26765 a8ed377c614eb52c079824a858d05451 226 Pfam PF01891 Cobalt uptake substrate-specific transmembrane region 2 211 5.7E-16 T 11-10-2018 IPR002751 Metal transport protein CbiM/NikMN GO:0000041|GO:0016021 AMK58_02375 5e94bfcd1054f06b478217c1a45b044b 388 Gene3D G3DSA:1.10.287.950 51 327 1.2E-35 T 11-10-2018 AMK58_02375 5e94bfcd1054f06b478217c1a45b044b 388 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 144 289 6.5E-24 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_02375 5e94bfcd1054f06b478217c1a45b044b 388 SUPERFAMILY SSF58104 67 318 1.19E-32 T 11-10-2018 AMK58_02375 5e94bfcd1054f06b478217c1a45b044b 388 SMART SM00283 65 315 4.9E-5 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_27135 da15c6891d4b322bf65d6ab81d42f798 479 Pfam PF00571 CBS domain 233 286 4.4E-7 T 11-10-2018 IPR000644 CBS domain AMK58_27135 da15c6891d4b322bf65d6ab81d42f798 479 SUPERFAMILY SSF54631 166 301 1.24E-25 T 11-10-2018 AMK58_27135 da15c6891d4b322bf65d6ab81d42f798 479 Gene3D G3DSA:1.10.357.20 304 478 3.8E-51 T 11-10-2018 IPR038048 Magnesium transporter MgtE, transmembrane domain AMK58_27135 da15c6891d4b322bf65d6ab81d42f798 479 SMART SM00924 64 167 3.4E-33 T 11-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain AMK58_27135 da15c6891d4b322bf65d6ab81d42f798 479 TIGRFAM TIGR00400 mgtE: magnesium transporter 46 478 1.9E-92 T 11-10-2018 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 AMK58_27135 da15c6891d4b322bf65d6ab81d42f798 479 SUPERFAMILY SSF161093 308 478 1.7E-49 T 11-10-2018 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324 AMK58_27135 da15c6891d4b322bf65d6ab81d42f798 479 SUPERFAMILY SSF158791 39 164 8.76E-31 T 11-10-2018 AMK58_27135 da15c6891d4b322bf65d6ab81d42f798 479 Gene3D G3DSA:1.25.60.10 36 162 1.1E-23 T 11-10-2018 IPR038076 MgtE, N-terminal domain superfamily AMK58_27135 da15c6891d4b322bf65d6ab81d42f798 479 SMART SM00116 239 287 3.4E-9 T 11-10-2018 IPR000644 CBS domain AMK58_27135 da15c6891d4b322bf65d6ab81d42f798 479 Gene3D G3DSA:3.10.580.10 163 291 2.4E-39 T 11-10-2018 AMK58_27135 da15c6891d4b322bf65d6ab81d42f798 479 Pfam PF03448 MgtE intracellular N domain 64 165 3.8E-26 T 11-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain AMK58_27135 da15c6891d4b322bf65d6ab81d42f798 479 Pfam PF01769 Divalent cation transporter 351 471 3.2E-26 T 11-10-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 AMK58_05745 508f2921152a686a78460180544a3b0c 292 Pfam PF08241 Methyltransferase domain 86 176 7.9E-7 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 AMK58_05745 508f2921152a686a78460180544a3b0c 292 Gene3D G3DSA:3.40.50.150 35 223 4.1E-14 T 11-10-2018 AMK58_05745 508f2921152a686a78460180544a3b0c 292 SUPERFAMILY SSF53335 64 227 8.26E-16 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_06295 ca08c618b175baf34fc01efc61afb7b6 788 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 60 788 1.2E-247 T 11-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 AMK58_06295 ca08c618b175baf34fc01efc61afb7b6 788 Gene3D G3DSA:3.10.20.310 299 370 9.4E-16 T 11-10-2018 AMK58_06295 ca08c618b175baf34fc01efc61afb7b6 788 Gene3D G3DSA:3.10.20.310 54 126 2.2E-19 T 11-10-2018 AMK58_06295 ca08c618b175baf34fc01efc61afb7b6 788 Pfam PF01103 Surface antigen 480 788 1.8E-80 T 11-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 AMK58_06295 ca08c618b175baf34fc01efc61afb7b6 788 Gene3D G3DSA:3.10.20.310 208 298 6.3E-23 T 11-10-2018 AMK58_06295 ca08c618b175baf34fc01efc61afb7b6 788 Gene3D G3DSA:2.40.160.50 456 788 1.5E-102 T 11-10-2018 AMK58_06295 ca08c618b175baf34fc01efc61afb7b6 788 Gene3D G3DSA:3.10.20.310 371 455 5.9E-25 T 11-10-2018 AMK58_06295 ca08c618b175baf34fc01efc61afb7b6 788 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 54 788 24.705 T 11-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 AMK58_06295 ca08c618b175baf34fc01efc61afb7b6 788 Pfam PF07244 Surface antigen variable number repeat 382 450 3.2E-11 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 AMK58_06295 ca08c618b175baf34fc01efc61afb7b6 788 Pfam PF07244 Surface antigen variable number repeat 298 377 6.3E-12 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 AMK58_06295 ca08c618b175baf34fc01efc61afb7b6 788 Pfam PF07244 Surface antigen variable number repeat 209 295 2.5E-14 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 AMK58_06295 ca08c618b175baf34fc01efc61afb7b6 788 Pfam PF07244 Surface antigen variable number repeat 128 204 1.8E-15 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 AMK58_06295 ca08c618b175baf34fc01efc61afb7b6 788 Pfam PF07244 Surface antigen variable number repeat 60 125 5.3E-8 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 AMK58_06295 ca08c618b175baf34fc01efc61afb7b6 788 PIRSF PIRSF006076 4 788 3.1E-259 T 11-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 AMK58_06295 ca08c618b175baf34fc01efc61afb7b6 788 Gene3D G3DSA:3.10.20.310 127 205 4.7E-17 T 11-10-2018 AMK58_15855 98d132522f1f54abc884c7a71437bd80 149 SUPERFAMILY SSF102400 1 139 4.18E-43 T 11-10-2018 IPR036768 DNA polymerase III subunit chi superfamily AMK58_15855 98d132522f1f54abc884c7a71437bd80 149 Pfam PF04364 DNA polymerase III chi subunit, HolC 1 134 6.8E-38 T 11-10-2018 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 AMK58_15855 98d132522f1f54abc884c7a71437bd80 149 Gene3D G3DSA:3.40.50.10110 1 138 2.2E-25 T 11-10-2018 IPR036768 DNA polymerase III subunit chi superfamily AMK58_22970 06564f41f6957bd5fe0648e12f46453d 234 Pfam PF03741 Integral membrane protein TerC family 12 184 9.6E-46 T 11-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 AMK58_22970 06564f41f6957bd5fe0648e12f46453d 234 TIGRFAM TIGR03717 R_switched_YjbE: integral membrane protein, YjbE family 9 185 9.4E-69 T 11-10-2018 IPR022301 Integral membrane protein YjbE AMK58_03345 6368af3cbf9d4ed69c200cdbe9de3382 218 Gene3D G3DSA:2.60.120.620 5 205 1.8E-8 T 11-10-2018 AMK58_28830 1abe49a28939e6f385b8fc4d6a4d16a8 1299 SUPERFAMILY SSF53448 1024 1229 1.79E-21 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_28830 1abe49a28939e6f385b8fc4d6a4d16a8 1299 Pfam PF00535 Glycosyl transferase family 2 769 933 6.2E-7 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMK58_28830 1abe49a28939e6f385b8fc4d6a4d16a8 1299 Pfam PF00535 Glycosyl transferase family 2 1031 1139 4.3E-5 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMK58_28830 1abe49a28939e6f385b8fc4d6a4d16a8 1299 Gene3D G3DSA:3.90.550.10 744 1010 5.4E-27 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_28830 1abe49a28939e6f385b8fc4d6a4d16a8 1299 Gene3D G3DSA:3.40.50.11350 256 401 4.2E-6 T 11-10-2018 AMK58_28830 1abe49a28939e6f385b8fc4d6a4d16a8 1299 SUPERFAMILY SSF53448 767 990 2.39E-28 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_28830 1abe49a28939e6f385b8fc4d6a4d16a8 1299 Gene3D G3DSA:3.90.550.10 1024 1221 4.4E-11 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_24080 f44c495f983de7f18248fe925e45bb94 764 Pfam PF11339 Protein of unknown function (DUF3141) 23 580 1.2E-264 T 11-10-2018 IPR024501 Protein of unknown function DUF3141 AMK58_24080 f44c495f983de7f18248fe925e45bb94 764 Gene3D G3DSA:3.40.50.1820 85 369 2.8E-6 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_24080 f44c495f983de7f18248fe925e45bb94 764 SUPERFAMILY SSF53474 51 375 5.8E-21 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_17730 5c2a72a3b1203ca9ebcbc52eb3e71130 175 Gene3D G3DSA:2.40.100.10 6 173 8.5E-52 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily AMK58_17730 5c2a72a3b1203ca9ebcbc52eb3e71130 175 PIRSF PIRSF001467 11 175 5.7E-37 T 11-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 AMK58_17730 5c2a72a3b1203ca9ebcbc52eb3e71130 175 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 58 75 - T 11-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 AMK58_17730 5c2a72a3b1203ca9ebcbc52eb3e71130 175 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 130 145 5.2E-12 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 AMK58_17730 5c2a72a3b1203ca9ebcbc52eb3e71130 175 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 117 129 5.2E-12 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 AMK58_17730 5c2a72a3b1203ca9ebcbc52eb3e71130 175 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 63 75 5.2E-12 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 AMK58_17730 5c2a72a3b1203ca9ebcbc52eb3e71130 175 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 37 52 5.2E-12 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 AMK58_17730 5c2a72a3b1203ca9ebcbc52eb3e71130 175 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 26 170 3.4E-49 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 AMK58_17730 5c2a72a3b1203ca9ebcbc52eb3e71130 175 SUPERFAMILY SSF50891 20 172 2.19E-53 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily AMK58_06130 ad00a125c9b28349e27936ed9dc282ea 205 Gene3D G3DSA:3.40.30.10 90 191 5.2E-34 T 11-10-2018 AMK58_06130 ad00a125c9b28349e27936ed9dc282ea 205 PIRSF PIRSF000216 1 205 6.1E-78 T 11-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06130 ad00a125c9b28349e27936ed9dc282ea 205 SUPERFAMILY SSF52833 17 190 1.57E-59 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_06130 ad00a125c9b28349e27936ed9dc282ea 205 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 26 172 2.9E-63 T 11-10-2018 AMK58_06130 ad00a125c9b28349e27936ed9dc282ea 205 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 26 172 5.9E-59 T 11-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06130 ad00a125c9b28349e27936ed9dc282ea 205 Gene3D G3DSA:1.10.10.1590 15 89 8.5E-28 T 11-10-2018 AMK58_03585 06fb26ffdb6baaf82bbdd423b38f92cc 515 Gene3D G3DSA:3.30.450.20 7 120 6.4E-12 T 11-10-2018 AMK58_03585 06fb26ffdb6baaf82bbdd423b38f92cc 515 SUPERFAMILY SSF52172 393 511 4.41E-23 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_03585 06fb26ffdb6baaf82bbdd423b38f92cc 515 SMART SM00448 391 505 6.2E-19 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_03585 06fb26ffdb6baaf82bbdd423b38f92cc 515 Pfam PF08448 PAS fold 18 122 6.8E-11 T 11-10-2018 IPR013656 PAS fold-4 AMK58_03585 06fb26ffdb6baaf82bbdd423b38f92cc 515 SUPERFAMILY SSF55874 207 372 1.44E-37 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_03585 06fb26ffdb6baaf82bbdd423b38f92cc 515 Gene3D G3DSA:1.10.287.130 121 215 3.1E-14 T 11-10-2018 AMK58_03585 06fb26ffdb6baaf82bbdd423b38f92cc 515 Gene3D G3DSA:3.40.50.2300 387 515 8.3E-22 T 11-10-2018 AMK58_03585 06fb26ffdb6baaf82bbdd423b38f92cc 515 Pfam PF00512 His Kinase A (phospho-acceptor) domain 153 217 3.4E-7 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_03585 06fb26ffdb6baaf82bbdd423b38f92cc 515 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 14 131 2.1E-8 T 11-10-2018 IPR000014 PAS domain AMK58_03585 06fb26ffdb6baaf82bbdd423b38f92cc 515 SMART SM00091 12 78 5.3E-6 T 11-10-2018 IPR000014 PAS domain AMK58_03585 06fb26ffdb6baaf82bbdd423b38f92cc 515 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 262 370 1.9E-21 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_03585 06fb26ffdb6baaf82bbdd423b38f92cc 515 SUPERFAMILY SSF47384 138 217 1.02E-11 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_03585 06fb26ffdb6baaf82bbdd423b38f92cc 515 PRINTS PR00344 Bacterial sensor protein C-terminal signature 315 325 2.1E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_03585 06fb26ffdb6baaf82bbdd423b38f92cc 515 PRINTS PR00344 Bacterial sensor protein C-terminal signature 332 350 2.1E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_03585 06fb26ffdb6baaf82bbdd423b38f92cc 515 PRINTS PR00344 Bacterial sensor protein C-terminal signature 297 311 2.1E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_03585 06fb26ffdb6baaf82bbdd423b38f92cc 515 PRINTS PR00344 Bacterial sensor protein C-terminal signature 356 369 2.1E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_03585 06fb26ffdb6baaf82bbdd423b38f92cc 515 Gene3D G3DSA:3.30.565.10 217 374 1.4E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_03585 06fb26ffdb6baaf82bbdd423b38f92cc 515 SMART SM00388 152 217 2.7E-8 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_03585 06fb26ffdb6baaf82bbdd423b38f92cc 515 SMART SM00387 261 372 2.8E-27 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_03585 06fb26ffdb6baaf82bbdd423b38f92cc 515 SUPERFAMILY SSF55785 14 118 4.71E-12 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_03585 06fb26ffdb6baaf82bbdd423b38f92cc 515 Pfam PF00072 Response regulator receiver domain 394 505 3.4E-13 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_00440 a39778c31099f2a8c0238ffb9223a60f 147 SUPERFAMILY SSF140931 42 136 1.7E-8 T 11-10-2018 IPR036597 Fido-like domain superfamily AMK58_00440 a39778c31099f2a8c0238ffb9223a60f 147 Gene3D G3DSA:1.20.120.1870 15 140 2.3E-35 T 11-10-2018 AMK58_00440 a39778c31099f2a8c0238ffb9223a60f 147 PIRSF PIRSF018297 12 137 3.7E-35 T 11-10-2018 IPR006440 Death on curing protein GO:0016301 AMK58_00440 a39778c31099f2a8c0238ffb9223a60f 147 TIGRFAM TIGR01550 DOC_P1: death-on-curing family protein 29 130 4.4E-16 T 11-10-2018 IPR006440 Death on curing protein GO:0016301 AMK58_00440 a39778c31099f2a8c0238ffb9223a60f 147 Pfam PF02661 Fic/DOC family 16 94 1.2E-11 T 11-10-2018 IPR003812 Fido domain AMK58_27075 d4d37dee187bd026e6379fdb2c66e294 328 Gene3D G3DSA:1.10.287.70 221 325 9.4E-17 T 11-10-2018 AMK58_27075 d4d37dee187bd026e6379fdb2c66e294 328 SUPERFAMILY SSF81324 221 314 3.53E-16 T 11-10-2018 AMK58_27075 d4d37dee187bd026e6379fdb2c66e294 328 Pfam PF07885 Ion channel 232 312 4.5E-13 T 11-10-2018 IPR013099 Potassium channel domain AMK58_06275 1f679667cc18e5fcbbd6c67b8d0a0730 245 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 12 240 41.486 T 11-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 AMK58_06275 1f679667cc18e5fcbbd6c67b8d0a0730 245 Gene3D G3DSA:3.40.1180.10 3 241 4.1E-96 T 11-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 AMK58_06275 1f679667cc18e5fcbbd6c67b8d0a0730 245 Pfam PF01255 Putative undecaprenyl diphosphate synthase 19 239 6.3E-82 T 11-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 AMK58_06275 1f679667cc18e5fcbbd6c67b8d0a0730 245 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 13 239 3.3E-86 T 11-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 AMK58_06275 1f679667cc18e5fcbbd6c67b8d0a0730 245 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 185 202 - T 11-10-2018 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199|Reactome: R-HSA-4755609 AMK58_06275 1f679667cc18e5fcbbd6c67b8d0a0730 245 SUPERFAMILY SSF64005 12 234 4.58E-86 T 11-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 AMK58_27140 509ca6fe82aa57d1dbac31d96a910f17 100 Pfam PF13466 STAS domain 16 94 4.2E-12 T 11-10-2018 IPR002645 STAS domain AMK58_27140 509ca6fe82aa57d1dbac31d96a910f17 100 Gene3D G3DSA:3.30.750.24 2 100 8.1E-12 T 11-10-2018 IPR036513 STAS domain superfamily AMK58_27140 509ca6fe82aa57d1dbac31d96a910f17 100 SUPERFAMILY SSF52091 1 99 5.49E-15 T 11-10-2018 IPR036513 STAS domain superfamily AMK58_16305 3efb057517e17964c7bb4c7061337212 356 SUPERFAMILY SSF89733 6 348 3.4E-88 T 11-10-2018 IPR036111 Malate/L-sulfolactate/L-lactate dehydrogenase-like superfamily GO:0016491|GO:0055114 AMK58_16305 3efb057517e17964c7bb4c7061337212 356 Gene3D G3DSA:1.10.1530.10 12 333 3.5E-99 T 11-10-2018 AMK58_16305 3efb057517e17964c7bb4c7061337212 356 Gene3D G3DSA:3.30.1370.60 69 313 3.5E-99 T 11-10-2018 AMK58_16305 3efb057517e17964c7bb4c7061337212 356 Pfam PF02615 Malate/L-lactate dehydrogenase 7 339 1.0E-99 T 11-10-2018 IPR003767 Malate/L-lactate dehydrogenase-like GO:0016491|GO:0055114 AMK58_23715 be8a2e21055b7a45e12df96f55ed2f2e 367 Gene3D G3DSA:2.40.50.100 271 356 1.9E-7 T 11-10-2018 AMK58_23715 be8a2e21055b7a45e12df96f55ed2f2e 367 Pfam PF00005 ABC transporter 18 160 5.9E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_23715 be8a2e21055b7a45e12df96f55ed2f2e 367 SUPERFAMILY SSF52540 4 243 2.42E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_23715 be8a2e21055b7a45e12df96f55ed2f2e 367 Gene3D G3DSA:2.40.50.140 281 343 1.9E-7 T 11-10-2018 AMK58_23715 be8a2e21055b7a45e12df96f55ed2f2e 367 Gene3D G3DSA:3.40.50.300 1 236 3.7E-55 T 11-10-2018 AMK58_23715 be8a2e21055b7a45e12df96f55ed2f2e 367 SMART SM00382 27 287 3.2E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_23715 be8a2e21055b7a45e12df96f55ed2f2e 367 SUPERFAMILY SSF50331 236 358 2.72E-17 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMK58_15615 2dbbebf532284cb11f2d57f34e4a2711 192 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 55 5.1E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_15615 2dbbebf532284cb11f2d57f34e4a2711 192 Gene3D G3DSA:1.10.357.10 2 192 1.0E-72 T 11-10-2018 AMK58_15615 2dbbebf532284cb11f2d57f34e4a2711 192 SUPERFAMILY SSF46689 6 83 2.24E-14 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_15615 2dbbebf532284cb11f2d57f34e4a2711 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 3.7E-6 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_15615 2dbbebf532284cb11f2d57f34e4a2711 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 3.7E-6 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_15615 2dbbebf532284cb11f2d57f34e4a2711 192 SUPERFAMILY SSF48498 78 190 5.19E-28 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMK58_00175 dd7939ae1dc1a50195e914eef05ed8fe 164 Pfam PF01047 MarR family 58 114 4.7E-17 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_00175 dd7939ae1dc1a50195e914eef05ed8fe 164 SMART SM00347 50 150 8.4E-33 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_00175 dd7939ae1dc1a50195e914eef05ed8fe 164 SUPERFAMILY SSF46785 23 162 5.94E-38 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_00175 dd7939ae1dc1a50195e914eef05ed8fe 164 Gene3D G3DSA:1.10.10.10 10 163 1.4E-40 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_00175 dd7939ae1dc1a50195e914eef05ed8fe 164 PRINTS PR00598 Bacterial regulatory protein MarR family signature 110 126 2.7E-15 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_00175 dd7939ae1dc1a50195e914eef05ed8fe 164 PRINTS PR00598 Bacterial regulatory protein MarR family signature 140 160 2.7E-15 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_00175 dd7939ae1dc1a50195e914eef05ed8fe 164 PRINTS PR00598 Bacterial regulatory protein MarR family signature 91 106 2.7E-15 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_00175 dd7939ae1dc1a50195e914eef05ed8fe 164 PRINTS PR00598 Bacterial regulatory protein MarR family signature 74 90 2.7E-15 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_22955 54aaf80e3ac99aae7a456bf9dc6e7df8 252 SMART SM00895 92 216 1.4E-18 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_22955 54aaf80e3ac99aae7a456bf9dc6e7df8 252 SUPERFAMILY SSF48008 89 221 1.28E-25 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_22955 54aaf80e3ac99aae7a456bf9dc6e7df8 252 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 56 1.2E-6 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_22955 54aaf80e3ac99aae7a456bf9dc6e7df8 252 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 56 72 1.2E-6 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_22955 54aaf80e3ac99aae7a456bf9dc6e7df8 252 Pfam PF07729 FCD domain 98 213 8.3E-26 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_22955 54aaf80e3ac99aae7a456bf9dc6e7df8 252 SUPERFAMILY SSF46785 12 86 2.04E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_22955 54aaf80e3ac99aae7a456bf9dc6e7df8 252 Gene3D G3DSA:1.10.10.10 14 83 2.3E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_22955 54aaf80e3ac99aae7a456bf9dc6e7df8 252 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 82 1.6E-14 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_22955 54aaf80e3ac99aae7a456bf9dc6e7df8 252 Gene3D G3DSA:1.20.120.530 86 221 4.4E-28 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_22955 54aaf80e3ac99aae7a456bf9dc6e7df8 252 SMART SM00345 21 82 5.0E-13 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_03115 4487441c00ca519296ff36e68719b695 321 Gene3D G3DSA:3.40.50.410 77 268 7.3E-50 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMK58_03115 4487441c00ca519296ff36e68719b695 321 Pfam PF00092 von Willebrand factor type A domain 79 261 6.7E-19 T 11-10-2018 IPR002035 von Willebrand factor, type A AMK58_03115 4487441c00ca519296ff36e68719b695 321 SUPERFAMILY SSF53300 75 263 5.79E-34 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMK58_03115 4487441c00ca519296ff36e68719b695 321 SMART SM00327 77 261 6.8E-19 T 11-10-2018 IPR002035 von Willebrand factor, type A AMK58_05255 68beb99d2688623480bea69ce18fc3f5 154 Pfam PF14489 QueF-like protein 58 136 6.4E-32 T 11-10-2018 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 AMK58_05255 68beb99d2688623480bea69ce18fc3f5 154 SUPERFAMILY SSF55620 24 141 5.26E-26 T 11-10-2018 AMK58_05255 68beb99d2688623480bea69ce18fc3f5 154 TIGRFAM TIGR03139 QueF-II: 7-cyano-7-deazaguanine reductase 23 133 1.3E-44 T 11-10-2018 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 AMK58_05255 68beb99d2688623480bea69ce18fc3f5 154 Gene3D G3DSA:3.30.1130.10 19 141 3.5E-40 T 11-10-2018 AMK58_05255 68beb99d2688623480bea69ce18fc3f5 154 Hamap MF_00818 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 154 68.103 T 11-10-2018 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 AMK58_10960 31b62258569388e16fb3b9cfb14085cd 167 ProSitePatterns PS00855 Signal peptidases II signature. 108 120 - T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AMK58_10960 31b62258569388e16fb3b9cfb14085cd 167 Pfam PF01252 Signal peptidase (SPase) II 20 161 1.7E-36 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AMK58_10960 31b62258569388e16fb3b9cfb14085cd 167 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 11 166 16.298 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AMK58_10960 31b62258569388e16fb3b9cfb14085cd 167 TIGRFAM TIGR00077 lspA: signal peptidase II 12 165 1.6E-34 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AMK58_10960 31b62258569388e16fb3b9cfb14085cd 167 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 59 67 3.4E-16 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AMK58_10960 31b62258569388e16fb3b9cfb14085cd 167 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 141 157 3.4E-16 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AMK58_10960 31b62258569388e16fb3b9cfb14085cd 167 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 105 120 3.4E-16 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AMK58_11615 b162d494da1dc44011a4824bb1069331 457 SUPERFAMILY SSF55073 38 149 2.98E-5 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_11615 b162d494da1dc44011a4824bb1069331 457 Gene3D G3DSA:3.30.70.270 29 170 1.4E-6 T 11-10-2018 AMK58_21470 9d35fd4124af68fe6201f3889fd98884 1256 Gene3D G3DSA:3.40.50.300 974 1235 2.7E-22 T 11-10-2018 AMK58_21470 9d35fd4124af68fe6201f3889fd98884 1256 Gene3D G3DSA:3.40.50.300 1 323 4.1E-36 T 11-10-2018 AMK58_21470 9d35fd4124af68fe6201f3889fd98884 1256 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1122 1194 2.8E-11 T 11-10-2018 AMK58_21470 9d35fd4124af68fe6201f3889fd98884 1256 Pfam PF13476 AAA domain 19 222 6.9E-21 T 11-10-2018 IPR038729 Rad50/SbcC-type AAA domain AMK58_21470 9d35fd4124af68fe6201f3889fd98884 1256 SUPERFAMILY SSF52540 1 1228 1.45E-36 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_21815 e010f2b37d73e0b0172a3fe7fc5062c2 170 Gene3D G3DSA:3.30.70.20 34 85 1.0E-9 T 11-10-2018 AMK58_21815 e010f2b37d73e0b0172a3fe7fc5062c2 170 Pfam PF00037 4Fe-4S binding domain 36 55 3.1E-7 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMK58_21815 e010f2b37d73e0b0172a3fe7fc5062c2 170 Pfam PF12838 4Fe-4S dicluster domain 111 157 4.1E-9 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMK58_21815 e010f2b37d73e0b0172a3fe7fc5062c2 170 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 143 154 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMK58_21815 e010f2b37d73e0b0172a3fe7fc5062c2 170 Gene3D G3DSA:3.30.70.20 102 161 5.9E-11 T 11-10-2018 AMK58_21815 e010f2b37d73e0b0172a3fe7fc5062c2 170 Hamap MF_02201 Ferredoxin-type protein NapF [napF]. 28 164 23.883 T 11-10-2018 IPR004496 Ferredoxin-type protein NapF GO:0051539 AMK58_21815 e010f2b37d73e0b0172a3fe7fc5062c2 170 TIGRFAM TIGR00402 napF: ferredoxin-type protein NapF 10 159 3.9E-39 T 11-10-2018 IPR004496 Ferredoxin-type protein NapF GO:0051539 AMK58_21815 e010f2b37d73e0b0172a3fe7fc5062c2 170 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 39 50 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMK58_21815 e010f2b37d73e0b0172a3fe7fc5062c2 170 SUPERFAMILY SSF54862 35 162 3.35E-18 T 11-10-2018 AMK58_27840 99b8277ee4446ebd7c6488c8fe5ef1f3 354 PRINTS PR00695 Copper containing nitrite reductase signature 146 161 9.3E-31 T 11-10-2018 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 AMK58_27840 99b8277ee4446ebd7c6488c8fe5ef1f3 354 PRINTS PR00695 Copper containing nitrite reductase signature 121 140 9.3E-31 T 11-10-2018 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 AMK58_27840 99b8277ee4446ebd7c6488c8fe5ef1f3 354 PRINTS PR00695 Copper containing nitrite reductase signature 163 179 9.3E-31 T 11-10-2018 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 AMK58_27840 99b8277ee4446ebd7c6488c8fe5ef1f3 354 PRINTS PR00695 Copper containing nitrite reductase signature 60 78 9.3E-31 T 11-10-2018 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 AMK58_27840 99b8277ee4446ebd7c6488c8fe5ef1f3 354 PRINTS PR00695 Copper containing nitrite reductase signature 86 102 9.3E-31 T 11-10-2018 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 AMK58_27840 99b8277ee4446ebd7c6488c8fe5ef1f3 354 PRINTS PR00695 Copper containing nitrite reductase signature 104 121 9.3E-31 T 11-10-2018 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 AMK58_27840 99b8277ee4446ebd7c6488c8fe5ef1f3 354 Gene3D G3DSA:2.60.40.420 27 180 4.3E-39 T 11-10-2018 IPR008972 Cupredoxin AMK58_27840 99b8277ee4446ebd7c6488c8fe5ef1f3 354 Pfam PF07732 Multicopper oxidase 69 181 5.4E-14 T 11-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 AMK58_27840 99b8277ee4446ebd7c6488c8fe5ef1f3 354 SUPERFAMILY SSF49503 57 197 1.42E-41 T 11-10-2018 IPR008972 Cupredoxin AMK58_27840 99b8277ee4446ebd7c6488c8fe5ef1f3 354 Gene3D G3DSA:2.60.40.420 181 345 1.5E-52 T 11-10-2018 IPR008972 Cupredoxin AMK58_27840 99b8277ee4446ebd7c6488c8fe5ef1f3 354 SUPERFAMILY SSF49503 181 339 2.61E-51 T 11-10-2018 IPR008972 Cupredoxin AMK58_27840 99b8277ee4446ebd7c6488c8fe5ef1f3 354 TIGRFAM TIGR02376 Cu_nitrite_red: nitrite reductase, copper-containing 38 340 1.5E-99 T 11-10-2018 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 AMK58_23115 27ab96e62e38aedaf6f3cf7c48a920bf 255 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 252 1.8E-52 T 11-10-2018 AMK58_23115 27ab96e62e38aedaf6f3cf7c48a920bf 255 SUPERFAMILY SSF51735 2 253 1.12E-67 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_23115 27ab96e62e38aedaf6f3cf7c48a920bf 255 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMK58_23115 27ab96e62e38aedaf6f3cf7c48a920bf 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 2.5E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_23115 27ab96e62e38aedaf6f3cf7c48a920bf 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 2.5E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_23115 27ab96e62e38aedaf6f3cf7c48a920bf 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 2.5E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_23115 27ab96e62e38aedaf6f3cf7c48a920bf 255 TIGRFAM TIGR04316 dhbA_paeA: 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase 9 254 6.9E-98 T 11-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 AMK58_23115 27ab96e62e38aedaf6f3cf7c48a920bf 255 Gene3D G3DSA:3.40.50.720 1 253 6.0E-71 T 11-10-2018 AMK58_23115 27ab96e62e38aedaf6f3cf7c48a920bf 255 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 166 189 2.7E-52 T 11-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 AMK58_23115 27ab96e62e38aedaf6f3cf7c48a920bf 255 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 100 120 2.7E-52 T 11-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 AMK58_23115 27ab96e62e38aedaf6f3cf7c48a920bf 255 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 231 250 2.7E-52 T 11-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 AMK58_23115 27ab96e62e38aedaf6f3cf7c48a920bf 255 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 13 30 2.7E-52 T 11-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 AMK58_23115 27ab96e62e38aedaf6f3cf7c48a920bf 255 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 80 97 2.7E-52 T 11-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 AMK58_23115 27ab96e62e38aedaf6f3cf7c48a920bf 255 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 205 224 2.7E-52 T 11-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 AMK58_14520 7c01e98c722fbd985a974a8b86d21d6c 287 PIRSF PIRSF015582 1 287 2.8E-74 T 11-10-2018 IPR011206 Citrate lyase beta subunit-like AMK58_14520 7c01e98c722fbd985a974a8b86d21d6c 287 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 6 223 8.9E-38 T 11-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 AMK58_14520 7c01e98c722fbd985a974a8b86d21d6c 287 Gene3D G3DSA:3.20.20.60 2 287 4.8E-82 T 11-10-2018 AMK58_14520 7c01e98c722fbd985a974a8b86d21d6c 287 SUPERFAMILY SSF51621 3 233 2.3E-52 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMK58_18285 6da6a77cbcf08e679f44d2f73a41e640 621 Gene3D G3DSA:1.20.1330.10 48 226 5.5E-9 T 11-10-2018 AMK58_18285 6da6a77cbcf08e679f44d2f73a41e640 621 SUPERFAMILY SSF64518 5 329 1.96E-29 T 11-10-2018 AMK58_18285 6da6a77cbcf08e679f44d2f73a41e640 621 Pfam PF00669 Bacterial flagellin N-terminal helical region 10 146 8.1E-16 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 AMK58_18285 6da6a77cbcf08e679f44d2f73a41e640 621 Pfam PF00700 Bacterial flagellin C-terminal helical region 539 621 1.0E-4 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 AMK58_18285 6da6a77cbcf08e679f44d2f73a41e640 621 SUPERFAMILY SSF64518 332 621 1.19E-16 T 11-10-2018 AMK58_08130 769a78c131a054fe44ee537db1919047 170 Gene3D G3DSA:3.10.129.10 22 166 2.0E-18 T 11-10-2018 AMK58_08130 769a78c131a054fe44ee537db1919047 170 SUPERFAMILY SSF54637 27 163 4.89E-24 T 11-10-2018 IPR029069 HotDog domain superfamily AMK58_08130 769a78c131a054fe44ee537db1919047 170 Pfam PF13279 Thioesterase-like superfamily 32 163 2.8E-24 T 11-10-2018 AMK58_23125 3425fa841dc8f46099a0e3754e149ebf 545 Gene3D G3DSA:3.30.300.310 436 539 1.5E-30 T 11-10-2018 AMK58_23125 3425fa841dc8f46099a0e3754e149ebf 545 ProSitePatterns PS00455 Putative AMP-binding domain signature. 193 204 - T 11-10-2018 IPR020845 AMP-binding, conserved site AMK58_23125 3425fa841dc8f46099a0e3754e149ebf 545 Gene3D G3DSA:3.40.50.12780 2 434 3.9E-121 T 11-10-2018 AMK58_23125 3425fa841dc8f46099a0e3754e149ebf 545 Pfam PF13193 AMP-binding enzyme C-terminal domain 449 523 9.6E-18 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMK58_23125 3425fa841dc8f46099a0e3754e149ebf 545 TIGRFAM TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase 3 530 6.9E-220 T 11-10-2018 IPR011963 2,3-dihydroxybenzoate-AMP ligase GO:0008668|GO:0019290 AMK58_23125 3425fa841dc8f46099a0e3754e149ebf 545 SUPERFAMILY SSF56801 6 534 3.27E-126 T 11-10-2018 AMK58_23125 3425fa841dc8f46099a0e3754e149ebf 545 Pfam PF00501 AMP-binding enzyme 39 440 2.9E-72 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMK58_28355 64140bd7a39fec6c6898cf4f778543b1 290 SUPERFAMILY SSF52540 92 232 6.25E-23 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_28355 64140bd7a39fec6c6898cf4f778543b1 290 SMART SM00382 108 243 3.7E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_28355 64140bd7a39fec6c6898cf4f778543b1 290 Gene3D G3DSA:3.40.50.300 72 254 8.5E-46 T 11-10-2018 AMK58_28355 64140bd7a39fec6c6898cf4f778543b1 290 Pfam PF01695 IstB-like ATP binding protein 64 240 1.6E-57 T 11-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 AMK58_28355 64140bd7a39fec6c6898cf4f778543b1 290 PIRSF PIRSF003073 11 261 5.7E-75 T 11-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein AMK58_19345 fdd86586b2cb244467143df17c35052c 165 SUPERFAMILY SSF54427 29 133 2.3E-38 T 11-10-2018 IPR032710 NTF2-like domain superfamily AMK58_19345 fdd86586b2cb244467143df17c35052c 165 Pfam PF02810 SEC-C motif 146 163 3.1E-11 T 11-10-2018 IPR004027 SEC-C motif AMK58_19345 fdd86586b2cb244467143df17c35052c 165 SUPERFAMILY SSF103642 143 164 1.1E-8 T 11-10-2018 AMK58_19345 fdd86586b2cb244467143df17c35052c 165 Hamap MF_00612 UPF0225 protein YchJ [ychJ]. 5 133 26.228 T 11-10-2018 IPR023006 Uncharacterised protein family UPF0225 AMK58_19345 fdd86586b2cb244467143df17c35052c 165 Gene3D G3DSA:3.10.450.50 3 165 1.8E-59 T 11-10-2018 AMK58_16275 9b00cdd377deda664c4cad47de4b6251 218 SUPERFAMILY SSF48695 34 189 1.61E-46 T 11-10-2018 IPR036280 Multiheme cytochrome superfamily AMK58_16275 9b00cdd377deda664c4cad47de4b6251 218 Gene3D G3DSA:3.90.10.10 41 115 4.3E-9 T 11-10-2018 AMK58_16275 9b00cdd377deda664c4cad47de4b6251 218 Pfam PF14522 Cytochrome c7 and related cytochrome c 126 217 1.6E-6 T 11-10-2018 IPR029467 C-type polyheme cytochrome OmcB AMK58_15910 47112dbd17247c4d368c0a6f9cace1d3 215 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 14 192 8.5E-70 T 11-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 AMK58_15910 47112dbd17247c4d368c0a6f9cace1d3 215 Pfam PF00625 Guanylate kinase 15 193 1.6E-49 T 11-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit AMK58_15910 47112dbd17247c4d368c0a6f9cace1d3 215 Gene3D G3DSA:3.30.63.10 44 103 2.0E-63 T 11-10-2018 AMK58_15910 47112dbd17247c4d368c0a6f9cace1d3 215 SMART SM00072 12 195 2.7E-59 T 11-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit AMK58_15910 47112dbd17247c4d368c0a6f9cace1d3 215 Gene3D G3DSA:3.40.50.300 17 191 2.0E-63 T 11-10-2018 AMK58_15910 47112dbd17247c4d368c0a6f9cace1d3 215 ProSitePatterns PS00856 Guanylate kinase-like signature. 47 64 - T 11-10-2018 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 AMK58_15910 47112dbd17247c4d368c0a6f9cace1d3 215 Hamap MF_00328 Guanylate kinase [gmk]. 11 195 35.131 T 11-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 AMK58_15910 47112dbd17247c4d368c0a6f9cace1d3 215 SUPERFAMILY SSF52540 11 198 1.15E-65 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_23210 e6743acc61caf46ace073e59b5e9fc68 427 Pfam PF13458 Periplasmic binding protein 26 392 3.8E-59 T 11-10-2018 IPR028081 Leucine-binding protein domain AMK58_23210 e6743acc61caf46ace073e59b5e9fc68 427 SUPERFAMILY SSF53822 25 390 2.67E-49 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMK58_23210 e6743acc61caf46ace073e59b5e9fc68 427 Gene3D G3DSA:3.40.50.2300 27 382 1.2E-89 T 11-10-2018 AMK58_23210 e6743acc61caf46ace073e59b5e9fc68 427 Gene3D G3DSA:3.40.50.2300 152 388 1.2E-89 T 11-10-2018 AMK58_20280 8eaee2d5b1061225f113abb761f385dd 369 SUPERFAMILY SSF50331 246 366 2.67E-18 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMK58_20280 8eaee2d5b1061225f113abb761f385dd 369 SMART SM00382 38 220 1.7E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_20280 8eaee2d5b1061225f113abb761f385dd 369 Gene3D G3DSA:2.40.50.940 232 363 3.4E-13 T 11-10-2018 AMK58_20280 8eaee2d5b1061225f113abb761f385dd 369 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 44 364 1.4E-114 T 11-10-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 AMK58_20280 8eaee2d5b1061225f113abb761f385dd 369 Gene3D G3DSA:3.40.50.300 13 231 1.7E-66 T 11-10-2018 AMK58_20280 8eaee2d5b1061225f113abb761f385dd 369 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_20280 8eaee2d5b1061225f113abb761f385dd 369 SUPERFAMILY SSF52540 13 251 1.02E-85 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_20280 8eaee2d5b1061225f113abb761f385dd 369 Pfam PF08402 TOBE domain 288 366 4.1E-16 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMK58_20280 8eaee2d5b1061225f113abb761f385dd 369 Gene3D G3DSA:2.40.50.140 295 358 3.4E-13 T 11-10-2018 AMK58_20280 8eaee2d5b1061225f113abb761f385dd 369 Pfam PF00005 ABC transporter 29 171 3.2E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_16430 2f04ce7f56a2e1b2dbf90b11ec5145b9 373 SUPERFAMILY SSF102405 86 288 2.75E-41 T 11-10-2018 AMK58_16430 2f04ce7f56a2e1b2dbf90b11ec5145b9 373 Pfam PF02481 DNA recombination-mediator protein A 79 279 4.3E-70 T 11-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 AMK58_16430 2f04ce7f56a2e1b2dbf90b11ec5145b9 373 Gene3D G3DSA:3.40.50.450 2 291 8.5E-108 T 11-10-2018 AMK58_16430 2f04ce7f56a2e1b2dbf90b11ec5145b9 373 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 74 287 3.6E-65 T 11-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 AMK58_16430 2f04ce7f56a2e1b2dbf90b11ec5145b9 373 Gene3D G3DSA:1.10.10.10 298 372 4.8E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_09960 b39ae4c969d4570bb04442cc6870aa67 111 Gene3D G3DSA:3.30.70.100 1 106 5.6E-33 T 11-10-2018 AMK58_09960 b39ae4c969d4570bb04442cc6870aa67 111 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 78 6.5E-19 T 11-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain AMK58_09960 b39ae4c969d4570bb04442cc6870aa67 111 SUPERFAMILY SSF54909 1 101 7.16E-32 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel AMK58_09345 93bd746be1c88992684bfe4ab138dcad 212 Pfam PF02581 Thiamine monophosphate synthase 8 189 3.9E-56 T 11-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMK58_09345 93bd746be1c88992684bfe4ab138dcad 212 Gene3D G3DSA:3.20.20.70 1 211 5.6E-66 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_09345 93bd746be1c88992684bfe4ab138dcad 212 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 6 208 22.99 T 11-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMK58_09345 93bd746be1c88992684bfe4ab138dcad 212 SUPERFAMILY SSF51391 5 203 1.44E-64 T 11-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMK58_09345 93bd746be1c88992684bfe4ab138dcad 212 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 7 198 3.5E-54 T 11-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMK58_19775 14ed93eabf470a7c403d9c80b9931358 362 Gene3D G3DSA:3.40.190.170 32 336 4.9E-130 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily AMK58_19775 14ed93eabf470a7c403d9c80b9931358 362 Gene3D G3DSA:3.40.190.10 152 322 4.9E-130 T 11-10-2018 AMK58_19775 14ed93eabf470a7c403d9c80b9931358 362 PIRSF PIRSF039026 1 355 3.2E-124 T 11-10-2018 IPR026289 Solute binding protein, mannitol/chloroaromatic system-like AMK58_19775 14ed93eabf470a7c403d9c80b9931358 362 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 38 320 1.4E-65 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 AMK58_22835 40b4f291d36b8446621e2d54e633f21b 208 SUPERFAMILY SSF52172 11 160 8.68E-34 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_22835 40b4f291d36b8446621e2d54e633f21b 208 SUPERFAMILY SSF46894 141 206 9.52E-19 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMK58_22835 40b4f291d36b8446621e2d54e633f21b 208 Gene3D G3DSA:1.10.10.10 141 206 2.3E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_22835 40b4f291d36b8446621e2d54e633f21b 208 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_22835 40b4f291d36b8446621e2d54e633f21b 208 SMART SM00448 12 123 5.5E-30 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_22835 40b4f291d36b8446621e2d54e633f21b 208 Gene3D G3DSA:3.40.50.2300 7 138 4.4E-44 T 11-10-2018 AMK58_22835 40b4f291d36b8446621e2d54e633f21b 208 SMART SM00421 147 204 9.9E-19 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_22835 40b4f291d36b8446621e2d54e633f21b 208 Pfam PF00196 Bacterial regulatory proteins, luxR family 149 202 3.4E-14 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_22835 40b4f291d36b8446621e2d54e633f21b 208 Pfam PF00072 Response regulator receiver domain 14 121 2.2E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_22835 40b4f291d36b8446621e2d54e633f21b 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 1.1E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_22835 40b4f291d36b8446621e2d54e633f21b 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 1.1E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_22835 40b4f291d36b8446621e2d54e633f21b 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 1.1E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_13205 3deac85696d498c39f0cc736cc6862f0 567 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 471 551 1.2E-15 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMK58_13205 3deac85696d498c39f0cc736cc6862f0 567 SMART SM00382 34 220 4.4E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_13205 3deac85696d498c39f0cc736cc6862f0 567 SMART SM00382 278 471 2.5E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_13205 3deac85696d498c39f0cc736cc6862f0 567 SUPERFAMILY SSF52540 10 222 1.37E-26 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_13205 3deac85696d498c39f0cc736cc6862f0 567 Pfam PF00005 ABC transporter 270 421 1.2E-19 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_13205 3deac85696d498c39f0cc736cc6862f0 567 SUPERFAMILY SSF52540 244 492 1.33E-40 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_13205 3deac85696d498c39f0cc736cc6862f0 567 Pfam PF00005 ABC transporter 25 163 5.6E-13 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_13205 3deac85696d498c39f0cc736cc6862f0 567 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 473 531 4.9E-9 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMK58_13205 3deac85696d498c39f0cc736cc6862f0 567 Gene3D G3DSA:3.40.50.300 242 563 2.6E-66 T 11-10-2018 AMK58_13205 3deac85696d498c39f0cc736cc6862f0 567 Gene3D G3DSA:3.40.50.300 10 230 4.3E-27 T 11-10-2018 AMK58_03015 44891ae82c74c58910f9e9d393a4de8b 403 Gene3D G3DSA:3.20.20.450 163 402 1.1E-48 T 11-10-2018 IPR035919 EAL domain superfamily AMK58_03015 44891ae82c74c58910f9e9d393a4de8b 403 Pfam PF00563 EAL domain 166 396 6.7E-47 T 11-10-2018 IPR001633 EAL domain AMK58_03015 44891ae82c74c58910f9e9d393a4de8b 403 SMART SM00052 160 401 4.5E-17 T 11-10-2018 IPR001633 EAL domain AMK58_03015 44891ae82c74c58910f9e9d393a4de8b 403 SUPERFAMILY SSF141868 166 400 1.7E-45 T 11-10-2018 IPR035919 EAL domain superfamily AMK58_26440 b6ece65282ff2353b432256b8cd32ebb 315 SUPERFAMILY SSF103481 188 289 1.83E-13 T 11-10-2018 AMK58_26440 b6ece65282ff2353b432256b8cd32ebb 315 SUPERFAMILY SSF103481 48 148 2.09E-12 T 11-10-2018 AMK58_26440 b6ece65282ff2353b432256b8cd32ebb 315 Pfam PF00892 EamA-like transporter family 154 284 1.1E-8 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_26440 b6ece65282ff2353b432256b8cd32ebb 315 Pfam PF00892 EamA-like transporter family 13 145 8.1E-12 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_04685 ca286d025e653890f2a978c3fca10112 255 SUPERFAMILY SSF56235 2 251 3.86E-46 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMK58_04685 ca286d025e653890f2a978c3fca10112 255 Pfam PF13230 Glutamine amidotransferases class-II 1 252 4.8E-114 T 11-10-2018 IPR026869 Putative glutamine amidotransferase type 2 AMK58_04685 ca286d025e653890f2a978c3fca10112 255 Gene3D G3DSA:3.60.20.10 1 255 1.3E-99 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMK58_14505 1f0ced67f113821d018d0421e773cb98 437 Gene3D G3DSA:1.25.40.10 1 164 2.8E-27 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_14505 1f0ced67f113821d018d0421e773cb98 437 SUPERFAMILY SSF53756 177 421 7.14E-17 T 11-10-2018 AMK58_14505 1f0ced67f113821d018d0421e773cb98 437 Pfam PF13424 Tetratricopeptide repeat 24 86 1.1E-8 T 11-10-2018 AMK58_14505 1f0ced67f113821d018d0421e773cb98 437 SMART SM00028 21 54 0.015 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14505 1f0ced67f113821d018d0421e773cb98 437 SMART SM00028 55 88 3.4E-6 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14505 1f0ced67f113821d018d0421e773cb98 437 SUPERFAMILY SSF48452 3 147 2.31E-23 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_20140 40ac6a1372fe80a1c3a2b74dff6aaaf9 92 Gene3D G3DSA:3.40.630.30 5 92 8.2E-18 T 11-10-2018 AMK58_20140 40ac6a1372fe80a1c3a2b74dff6aaaf9 92 Pfam PF14542 GCN5-related N-acetyl-transferase 13 89 7.2E-19 T 11-10-2018 IPR031165 Yjdj-type Gcn5-related N-acetyltransferase AMK58_20140 40ac6a1372fe80a1c3a2b74dff6aaaf9 92 SUPERFAMILY SSF55729 4 91 3.48E-22 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_27490 3c1dfa0811dfb331d60ff5d40b523df9 137 SUPERFAMILY SSF46785 17 122 4.23E-30 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_27490 3c1dfa0811dfb331d60ff5d40b523df9 137 Pfam PF01638 HxlR-like helix-turn-helix 36 123 2.5E-26 T 11-10-2018 IPR002577 Helix-turn-helix, HxlR type AMK58_27490 3c1dfa0811dfb331d60ff5d40b523df9 137 Gene3D G3DSA:1.10.10.10 12 134 1.1E-37 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_21830 9e17247f551c966eb30802f755be7083 442 TIGRFAM TIGR04259 oxa_formateAnti: oxalate/formate antiporter 21 425 3.1E-189 T 11-10-2018 IPR026355 Oxalate/formate antiporter GO:0016021|GO:0019531|GO:0019532 AMK58_21830 9e17247f551c966eb30802f755be7083 442 SUPERFAMILY SSF103473 16 420 1.83E-52 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_21830 9e17247f551c966eb30802f755be7083 442 Gene3D G3DSA:1.20.1250.20 13 426 2.3E-50 T 11-10-2018 AMK58_21830 9e17247f551c966eb30802f755be7083 442 Pfam PF07690 Major Facilitator Superfamily 29 282 7.8E-28 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMK58_13305 3607476a0fefdbb4bdb58f0b23c64d64 281 Gene3D G3DSA:1.10.3720.10 63 278 8.3E-20 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_13305 3607476a0fefdbb4bdb58f0b23c64d64 281 SUPERFAMILY SSF161098 70 257 3.14E-24 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_13305 3607476a0fefdbb4bdb58f0b23c64d64 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 276 3.2E-23 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_21560 4e594dfa8e0c6b37755f936d2aaaf467 531 Pfam PF00512 His Kinase A (phospho-acceptor) domain 155 220 6.3E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_21560 4e594dfa8e0c6b37755f936d2aaaf467 531 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 265 372 5.8E-20 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_21560 4e594dfa8e0c6b37755f936d2aaaf467 531 Gene3D G3DSA:3.40.50.2300 397 527 4.1E-22 T 11-10-2018 AMK58_21560 4e594dfa8e0c6b37755f936d2aaaf467 531 SUPERFAMILY SSF55874 209 371 9.17E-39 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_21560 4e594dfa8e0c6b37755f936d2aaaf467 531 SMART SM00388 155 220 1.2E-7 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_21560 4e594dfa8e0c6b37755f936d2aaaf467 531 SMART SM00448 400 514 3.1E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_21560 4e594dfa8e0c6b37755f936d2aaaf467 531 Gene3D G3DSA:3.30.565.10 219 375 1.8E-37 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_21560 4e594dfa8e0c6b37755f936d2aaaf467 531 SUPERFAMILY SSF52172 398 519 5.98E-25 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_21560 4e594dfa8e0c6b37755f936d2aaaf467 531 PRINTS PR00344 Bacterial sensor protein C-terminal signature 318 328 2.5E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_21560 4e594dfa8e0c6b37755f936d2aaaf467 531 PRINTS PR00344 Bacterial sensor protein C-terminal signature 300 314 2.5E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_21560 4e594dfa8e0c6b37755f936d2aaaf467 531 PRINTS PR00344 Bacterial sensor protein C-terminal signature 359 372 2.5E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_21560 4e594dfa8e0c6b37755f936d2aaaf467 531 PRINTS PR00344 Bacterial sensor protein C-terminal signature 335 353 2.5E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_21560 4e594dfa8e0c6b37755f936d2aaaf467 531 Gene3D G3DSA:1.10.287.130 134 218 8.6E-12 T 11-10-2018 AMK58_21560 4e594dfa8e0c6b37755f936d2aaaf467 531 SMART SM00387 264 375 4.8E-28 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_21560 4e594dfa8e0c6b37755f936d2aaaf467 531 SUPERFAMILY SSF47384 139 220 3.73E-13 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_21560 4e594dfa8e0c6b37755f936d2aaaf467 531 Pfam PF00072 Response regulator receiver domain 402 514 1.7E-14 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_15205 9a163a9c313b583058f450bb4aaaa759 204 SUPERFAMILY SSF101473 4 200 2.35E-29 T 11-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AMK58_15205 9a163a9c313b583058f450bb4aaaa759 204 Pfam PF02734 DAK2 domain 33 200 5.2E-28 T 11-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AMK58_15205 9a163a9c313b583058f450bb4aaaa759 204 Gene3D G3DSA:1.25.40.340 2 202 1.1E-31 T 11-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AMK58_15205 9a163a9c313b583058f450bb4aaaa759 204 SMART SM01120 32 201 9.0E-26 T 11-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AMK58_07260 ec7267955d8e56b24f6a4fecfd286bab 366 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 327 342 5.3E-24 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMK58_07260 ec7267955d8e56b24f6a4fecfd286bab 366 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 87 97 5.3E-24 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMK58_07260 ec7267955d8e56b24f6a4fecfd286bab 366 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 25 41 5.3E-24 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMK58_07260 ec7267955d8e56b24f6a4fecfd286bab 366 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 66 84 5.3E-24 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMK58_07260 ec7267955d8e56b24f6a4fecfd286bab 366 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 47 63 5.3E-24 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMK58_07260 ec7267955d8e56b24f6a4fecfd286bab 366 Pfam PF13458 Periplasmic binding protein 25 361 3.7E-56 T 11-10-2018 IPR028081 Leucine-binding protein domain AMK58_07260 ec7267955d8e56b24f6a4fecfd286bab 366 Gene3D G3DSA:3.40.50.2300 32 343 4.9E-117 T 11-10-2018 AMK58_07260 ec7267955d8e56b24f6a4fecfd286bab 366 Gene3D G3DSA:3.40.50.2300 143 271 4.9E-117 T 11-10-2018 AMK58_07260 ec7267955d8e56b24f6a4fecfd286bab 366 SUPERFAMILY SSF53822 24 365 8.35E-94 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMK58_09590 7bb7467b88c7b3da6f6d4766912da6b6 350 Pfam PF00849 RNA pseudouridylate synthase 114 271 4.5E-37 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMK58_09590 7bb7467b88c7b3da6f6d4766912da6b6 350 Pfam PF01479 S4 domain 39 85 1.6E-5 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_09590 7bb7467b88c7b3da6f6d4766912da6b6 350 Gene3D G3DSA:3.30.2350.10 97 337 2.5E-81 T 11-10-2018 AMK58_09590 7bb7467b88c7b3da6f6d4766912da6b6 350 SMART SM00363 39 99 0.0017 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_09590 7bb7467b88c7b3da6f6d4766912da6b6 350 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 161 175 - T 11-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMK58_09590 7bb7467b88c7b3da6f6d4766912da6b6 350 SUPERFAMILY SSF55174 39 127 4.04E-8 T 11-10-2018 AMK58_09590 7bb7467b88c7b3da6f6d4766912da6b6 350 Gene3D G3DSA:3.10.290.10 26 96 1.3E-15 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AMK58_09590 7bb7467b88c7b3da6f6d4766912da6b6 350 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 38 345 1.2E-96 T 11-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMK58_09590 7bb7467b88c7b3da6f6d4766912da6b6 350 SUPERFAMILY SSF55120 100 347 1.42E-79 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMK58_22490 7d8d2e63b53965bbe6e79ce22296a7cd 305 SUPERFAMILY SSF53850 95 296 9.23E-23 T 11-10-2018 AMK58_22490 7d8d2e63b53965bbe6e79ce22296a7cd 305 Pfam PF03466 LysR substrate binding domain 94 292 1.5E-20 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_22490 7d8d2e63b53965bbe6e79ce22296a7cd 305 Gene3D G3DSA:3.40.190.10 103 289 2.2E-38 T 11-10-2018 AMK58_22490 7d8d2e63b53965bbe6e79ce22296a7cd 305 SUPERFAMILY SSF46785 3 88 4.52E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_22490 7d8d2e63b53965bbe6e79ce22296a7cd 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 66 1.3E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_22490 7d8d2e63b53965bbe6e79ce22296a7cd 305 Gene3D G3DSA:1.10.10.10 8 95 1.6E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_22490 7d8d2e63b53965bbe6e79ce22296a7cd 305 Gene3D G3DSA:3.40.190.10 165 263 2.2E-38 T 11-10-2018 AMK58_11140 2365bbebda19abcc0ad9c4729c11f805 158 PIRSF PIRSF020565 1 154 4.7E-35 T 11-10-2018 IPR016776 3-hydroxylacyl-(acyl carrier protein) dehydratase, predicted AMK58_11140 2365bbebda19abcc0ad9c4729c11f805 158 Gene3D G3DSA:3.10.129.10 6 146 4.5E-16 T 11-10-2018 AMK58_11140 2365bbebda19abcc0ad9c4729c11f805 158 SUPERFAMILY SSF54637 7 144 1.4E-16 T 11-10-2018 IPR029069 HotDog domain superfamily AMK58_28440 04fc0a9e32b18e24b478e3c7f8b8e23a 384 Gene3D G3DSA:2.40.420.20 281 371 5.1E-21 T 11-10-2018 AMK58_28440 04fc0a9e32b18e24b478e3c7f8b8e23a 384 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 37 370 4.6E-73 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMK58_28440 04fc0a9e32b18e24b478e3c7f8b8e23a 384 SUPERFAMILY SSF111369 50 294 2.75E-67 T 11-10-2018 AMK58_28440 04fc0a9e32b18e24b478e3c7f8b8e23a 384 Gene3D G3DSA:1.10.287.470 96 169 1.8E-65 T 11-10-2018 AMK58_28440 04fc0a9e32b18e24b478e3c7f8b8e23a 384 Gene3D G3DSA:2.40.50.100 61 205 1.8E-65 T 11-10-2018 AMK58_28440 04fc0a9e32b18e24b478e3c7f8b8e23a 384 Gene3D G3DSA:2.40.30.170 55 280 1.8E-65 T 11-10-2018 AMK58_28440 04fc0a9e32b18e24b478e3c7f8b8e23a 384 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 60 289 2.2E-11 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMK58_10365 94af2bc12bf6d3fe3dbc998c42d651ed 92 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 91 4.1E-42 T 11-10-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 AMK58_10365 94af2bc12bf6d3fe3dbc998c42d651ed 92 PIRSF PIRSF002144 1 92 3.3E-34 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10365 94af2bc12bf6d3fe3dbc998c42d651ed 92 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 1.6E-20 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10365 94af2bc12bf6d3fe3dbc998c42d651ed 92 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 1.6E-20 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10365 94af2bc12bf6d3fe3dbc998c42d651ed 92 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 1.6E-20 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10365 94af2bc12bf6d3fe3dbc998c42d651ed 92 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 11-10-2018 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10365 94af2bc12bf6d3fe3dbc998c42d651ed 92 Gene3D G3DSA:3.30.860.10 1 92 8.4E-39 T 11-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10365 94af2bc12bf6d3fe3dbc998c42d651ed 92 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 24.695 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10365 94af2bc12bf6d3fe3dbc998c42d651ed 92 Pfam PF00203 Ribosomal protein S19 3 83 5.2E-35 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10365 94af2bc12bf6d3fe3dbc998c42d651ed 92 SUPERFAMILY SSF54570 3 84 2.49E-34 T 11-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_05585 90a79a97fd7ea81f63faf9582a024a9e 324 Pfam PF02653 Branched-chain amino acid transport system / permease component 14 302 3.1E-36 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_17110 77ffae4486a572d9d9d18861929853d4 180 Pfam PF07309 Flagellar protein FlaF 42 135 1.4E-13 T 11-10-2018 IPR010845 Flagellar FlaF GO:0044781 AMK58_17110 77ffae4486a572d9d9d18861929853d4 180 Pfam PF11154 Protein of unknown function (DUF2934) 141 174 9.6E-16 T 11-10-2018 IPR021327 Protein of unknown function DUF2934 AMK58_27680 c81b22b8d093fc99d016b21361b1a4ef 292 Gene3D G3DSA:3.40.50.620 162 289 4.8E-13 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_27680 c81b22b8d093fc99d016b21361b1a4ef 292 SUPERFAMILY SSF52402 1 161 1.67E-10 T 11-10-2018 AMK58_27680 c81b22b8d093fc99d016b21361b1a4ef 292 SUPERFAMILY SSF52402 172 290 5.02E-15 T 11-10-2018 AMK58_27680 c81b22b8d093fc99d016b21361b1a4ef 292 Pfam PF00582 Universal stress protein family 173 282 2.5E-5 T 11-10-2018 IPR006016 UspA AMK58_27680 c81b22b8d093fc99d016b21361b1a4ef 292 Gene3D G3DSA:3.40.50.620 1 161 2.8E-12 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_13270 c98b27f94826c0232377d0d7c3e9c836 177 Pfam PF02915 Rubrerythrin 15 90 1.1E-8 T 11-10-2018 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 AMK58_13270 c98b27f94826c0232377d0d7c3e9c836 177 Pfam PF02915 Rubrerythrin 107 160 9.6E-8 T 11-10-2018 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 AMK58_13270 c98b27f94826c0232377d0d7c3e9c836 177 Gene3D G3DSA:1.20.1260.10 9 160 2.8E-50 T 11-10-2018 IPR012347 Ferritin-like AMK58_13270 c98b27f94826c0232377d0d7c3e9c836 177 SUPERFAMILY SSF47240 15 163 2.18E-30 T 11-10-2018 IPR009078 Ferritin-like superfamily AMK58_15890 2809de0fd5a68559e595440cce2bbb5f 269 Gene3D G3DSA:1.25.40.10 38 97 5.4E-10 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_15890 2809de0fd5a68559e595440cce2bbb5f 269 Pfam PF01464 Transglycosylase SLT domain 124 227 7.1E-27 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 AMK58_15890 2809de0fd5a68559e595440cce2bbb5f 269 SUPERFAMILY SSF81901 39 89 7.32E-6 T 11-10-2018 AMK58_15890 2809de0fd5a68559e595440cce2bbb5f 269 Gene3D G3DSA:1.10.530.10 116 247 2.7E-42 T 11-10-2018 AMK58_15890 2809de0fd5a68559e595440cce2bbb5f 269 SUPERFAMILY SSF53955 94 241 1.13E-45 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily AMK58_15890 2809de0fd5a68559e595440cce2bbb5f 269 SMART SM00671 46 81 1.4E-4 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_20060 ca91e1f56ae09a14d30403878fbb16a4 549 Gene3D G3DSA:3.30.70.20 448 543 7.2E-41 T 11-10-2018 AMK58_20060 ca91e1f56ae09a14d30403878fbb16a4 549 SUPERFAMILY SSF51905 7 444 6.67E-57 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_20060 ca91e1f56ae09a14d30403878fbb16a4 549 Gene3D G3DSA:3.50.50.60 10 385 1.1E-207 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_20060 ca91e1f56ae09a14d30403878fbb16a4 549 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 179 194 6.8E-5 T 11-10-2018 AMK58_20060 ca91e1f56ae09a14d30403878fbb16a4 549 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 12 34 6.8E-5 T 11-10-2018 AMK58_20060 ca91e1f56ae09a14d30403878fbb16a4 549 SUPERFAMILY SSF54862 447 546 6.77E-29 T 11-10-2018 AMK58_20060 ca91e1f56ae09a14d30403878fbb16a4 549 Gene3D G3DSA:3.30.9.90 82 447 1.1E-207 T 11-10-2018 AMK58_20060 ca91e1f56ae09a14d30403878fbb16a4 549 Pfam PF13450 NAD(P)-binding Rossmann-like domain 15 60 2.0E-6 T 11-10-2018 AMK58_20060 ca91e1f56ae09a14d30403878fbb16a4 549 Pfam PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 443 545 1.4E-51 T 11-10-2018 AMK58_20060 ca91e1f56ae09a14d30403878fbb16a4 549 SUPERFAMILY SSF54373 211 307 1.49E-36 T 11-10-2018 AMK58_19240 277d9f782c84060c8741c17419aa0bd5 546 SUPERFAMILY SSF58104 227 539 7.59E-64 T 11-10-2018 AMK58_19240 277d9f782c84060c8741c17419aa0bd5 546 SMART SM00304 197 250 4.8E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_19240 277d9f782c84060c8741c17419aa0bd5 546 Pfam PF00672 HAMP domain 199 247 1.3E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_19240 277d9f782c84060c8741c17419aa0bd5 546 Gene3D G3DSA:1.10.287.950 255 541 2.2E-55 T 11-10-2018 AMK58_19240 277d9f782c84060c8741c17419aa0bd5 546 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 350 510 7.2E-35 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_19240 277d9f782c84060c8741c17419aa0bd5 546 SMART SM00283 286 540 1.9E-47 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_19240 277d9f782c84060c8741c17419aa0bd5 546 Gene3D G3DSA:1.20.1480.50 158 254 4.3E-16 T 11-10-2018 AMK58_15950 83a16153a7552f9854d677edaaffc7b0 222 Pfam PF00551 Formyl transferase 10 190 1.0E-60 T 11-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMK58_15950 83a16153a7552f9854d677edaaffc7b0 222 Gene3D G3DSA:3.40.50.170 3 212 2.3E-82 T 11-10-2018 AMK58_15950 83a16153a7552f9854d677edaaffc7b0 222 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 10 200 1.2E-74 T 11-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 AMK58_15950 83a16153a7552f9854d677edaaffc7b0 222 SUPERFAMILY SSF53328 9 207 1.03E-65 T 11-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMK58_15950 83a16153a7552f9854d677edaaffc7b0 222 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 10 196 32.398 T 11-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 AMK58_02325 9fce16038bb020b2febdab2b84d7e186 101 Pfam PF01740 STAS domain 36 97 2.3E-10 T 11-10-2018 IPR002645 STAS domain AMK58_02325 9fce16038bb020b2febdab2b84d7e186 101 Gene3D G3DSA:3.30.750.24 1 101 2.1E-17 T 11-10-2018 IPR036513 STAS domain superfamily AMK58_02325 9fce16038bb020b2febdab2b84d7e186 101 SUPERFAMILY SSF52091 1 99 2.35E-18 T 11-10-2018 IPR036513 STAS domain superfamily AMK58_05755 cd768199566b43481a55c14ca658305b 402 Pfam PF05940 NnrS protein 17 396 7.4E-109 T 11-10-2018 IPR010266 NnrS AMK58_20330 b54370a3aae575e152a6e7c768528d99 154 SUPERFAMILY SSF55961 3 153 8.97E-47 T 11-10-2018 AMK58_20330 b54370a3aae575e152a6e7c768528d99 154 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 15 151 2.1E-33 T 11-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like AMK58_20330 b54370a3aae575e152a6e7c768528d99 154 Gene3D G3DSA:3.30.530.20 1 153 5.1E-45 T 11-10-2018 IPR023393 START-like domain superfamily AMK58_03520 f88df774c89e974c1b5efbeaf91272d5 221 SUPERFAMILY SSF52172 1 133 1.31E-26 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_03520 f88df774c89e974c1b5efbeaf91272d5 221 Pfam PF00196 Bacterial regulatory proteins, luxR family 154 209 8.5E-19 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_03520 f88df774c89e974c1b5efbeaf91272d5 221 SMART SM00448 2 120 3.0E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_03520 f88df774c89e974c1b5efbeaf91272d5 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 185 197 3.0E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_03520 f88df774c89e974c1b5efbeaf91272d5 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 169 3.0E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_03520 f88df774c89e974c1b5efbeaf91272d5 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 169 185 3.0E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_03520 f88df774c89e974c1b5efbeaf91272d5 221 SUPERFAMILY SSF46894 143 214 3.74E-19 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMK58_03520 f88df774c89e974c1b5efbeaf91272d5 221 ProSitePatterns PS00622 LuxR-type HTH domain signature. 169 196 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_03520 f88df774c89e974c1b5efbeaf91272d5 221 Gene3D G3DSA:3.40.50.12740 3 214 1.7E-52 T 11-10-2018 AMK58_03520 f88df774c89e974c1b5efbeaf91272d5 221 Pfam PF00072 Response regulator receiver domain 4 119 5.1E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_03520 f88df774c89e974c1b5efbeaf91272d5 221 SMART SM00421 152 209 3.7E-21 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_09070 0c16160291b124e2612942eec79409fa 274 SMART SM00849 27 216 1.4E-8 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMK58_09070 0c16160291b124e2612942eec79409fa 274 SUPERFAMILY SSF56281 5 273 4.06E-52 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMK58_09070 0c16160291b124e2612942eec79409fa 274 Gene3D G3DSA:3.60.15.10 4 274 7.2E-52 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMK58_09070 0c16160291b124e2612942eec79409fa 274 Pfam PF12706 Beta-lactamase superfamily domain 39 239 1.3E-31 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMK58_01675 1a9fda40a5cd07288ee0aef914ca374e 229 SUPERFAMILY SSF55620 32 220 1.93E-52 T 11-10-2018 AMK58_01675 1a9fda40a5cd07288ee0aef914ca374e 229 Gene3D G3DSA:1.10.286.10 4 83 1.5E-7 T 11-10-2018 AMK58_01675 1a9fda40a5cd07288ee0aef914ca374e 229 Gene3D G3DSA:3.30.1130.10 87 223 6.3E-38 T 11-10-2018 AMK58_01675 1a9fda40a5cd07288ee0aef914ca374e 229 Pfam PF01227 GTP cyclohydrolase I 41 220 9.9E-46 T 11-10-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 AMK58_09705 8c4edce531684082c2109bb3f6b5e213 267 TIGRFAM TIGR00245 TIGR00245: TIGR00245 family protein 5 256 1.8E-52 T 11-10-2018 IPR005226 UPF0014 family AMK58_09705 8c4edce531684082c2109bb3f6b5e213 267 Pfam PF03649 Uncharacterised protein family (UPF0014) 8 248 5.8E-82 T 11-10-2018 IPR005226 UPF0014 family AMK58_19105 b5b381d59975464312d7ae15b884bc28 217 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 1 138 8.3E-34 T 11-10-2018 IPR007404 LexA-binding, inner membrane-associated putative hydrolase AMK58_17390 9d32426c413bd6d65aaccc653b804854 219 Pfam PF00440 Bacterial regulatory proteins, tetR family 24 69 3.4E-15 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_17390 9d32426c413bd6d65aaccc653b804854 219 SUPERFAMILY SSF48498 90 212 7.23E-23 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMK58_17390 9d32426c413bd6d65aaccc653b804854 219 SUPERFAMILY SSF46689 9 87 1.23E-17 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_17390 9d32426c413bd6d65aaccc653b804854 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 23 36 4.1E-9 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_17390 9d32426c413bd6d65aaccc653b804854 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 44 67 4.1E-9 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_17390 9d32426c413bd6d65aaccc653b804854 219 Pfam PF16859 Bacterial transcriptional repressor C-terminal 89 182 8.3E-13 T 11-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMK58_17390 9d32426c413bd6d65aaccc653b804854 219 Gene3D G3DSA:1.10.357.10 67 213 3.6E-25 T 11-10-2018 AMK58_17390 9d32426c413bd6d65aaccc653b804854 219 Gene3D G3DSA:1.10.10.60 6 66 4.6E-18 T 11-10-2018 AMK58_15135 09f290d1362269cc2cc58648a11806a0 141 SUPERFAMILY SSF55811 9 121 7.99E-19 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMK58_15135 09f290d1362269cc2cc58648a11806a0 141 Gene3D G3DSA:3.90.79.10 7 133 3.6E-25 T 11-10-2018 AMK58_15135 09f290d1362269cc2cc58648a11806a0 141 Pfam PF00293 NUDIX domain 15 126 9.5E-11 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMK58_11870 1e68dd7c02180d725e409989dd4332cb 107 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 3 103 3.1E-30 T 11-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMK58_11870 1e68dd7c02180d725e409989dd4332cb 107 SUPERFAMILY SSF82607 8 101 2.49E-32 T 11-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily AMK58_11870 1e68dd7c02180d725e409989dd4332cb 107 Gene3D G3DSA:3.30.1310.10 1 107 7.1E-40 T 11-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily AMK58_11870 1e68dd7c02180d725e409989dd4332cb 107 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 2 96 22.105 T 11-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMK58_11870 1e68dd7c02180d725e409989dd4332cb 107 PIRSF PIRSF004555 1 107 3.0E-38 T 11-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMK58_11870 1e68dd7c02180d725e409989dd4332cb 107 Pfam PF02575 YbaB/EbfC DNA-binding family 8 97 9.8E-33 T 11-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMK58_08785 75f6688d373f326dae680cb2ad6cdaf4 164 Pfam PF13279 Thioesterase-like superfamily 15 134 4.7E-20 T 11-10-2018 AMK58_08785 75f6688d373f326dae680cb2ad6cdaf4 164 SUPERFAMILY SSF54637 11 159 4.6E-44 T 11-10-2018 IPR029069 HotDog domain superfamily AMK58_08785 75f6688d373f326dae680cb2ad6cdaf4 164 Gene3D G3DSA:3.10.129.10 5 142 1.6E-40 T 11-10-2018 AMK58_23340 71f50c88c67037693ed6ebc68f927429 529 Pfam PF07690 Major Facilitator Superfamily 25 421 3.8E-26 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMK58_23340 71f50c88c67037693ed6ebc68f927429 529 SUPERFAMILY SSF103473 21 515 7.32E-27 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_08655 3c25f02fde8e79ba64c16cd79d3d51fb 226 Gene3D G3DSA:1.10.150.240 25 92 5.9E-50 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 AMK58_08655 3c25f02fde8e79ba64c16cd79d3d51fb 226 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 13 221 1.7E-53 T 11-10-2018 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic GO:0016791 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 AMK58_08655 3c25f02fde8e79ba64c16cd79d3d51fb 226 SUPERFAMILY SSF56784 10 222 9.61E-51 T 11-10-2018 IPR036412 HAD-like superfamily AMK58_08655 3c25f02fde8e79ba64c16cd79d3d51fb 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 108 121 1.9E-5 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMK58_08655 3c25f02fde8e79ba64c16cd79d3d51fb 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 10 21 1.9E-5 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMK58_08655 3c25f02fde8e79ba64c16cd79d3d51fb 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 182 195 1.9E-5 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMK58_08655 3c25f02fde8e79ba64c16cd79d3d51fb 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 139 155 1.9E-5 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMK58_08655 3c25f02fde8e79ba64c16cd79d3d51fb 226 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 101 187 2.5E-8 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMK58_08655 3c25f02fde8e79ba64c16cd79d3d51fb 226 Hamap MF_00495 Phosphoglycolate phosphatase [gph]. 10 222 36.344 T 11-10-2018 IPR037512 Phosphoglycolate phosphatase, prokaryotic GO:0005975|GO:0008967 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 AMK58_08655 3c25f02fde8e79ba64c16cd79d3d51fb 226 Pfam PF13419 Haloacid dehalogenase-like hydrolase 13 192 2.8E-27 T 11-10-2018 AMK58_08655 3c25f02fde8e79ba64c16cd79d3d51fb 226 Gene3D G3DSA:3.40.50.1000 13 210 5.9E-50 T 11-10-2018 IPR023214 HAD superfamily AMK58_12265 9f189745f61682b05c9aab1232cfe520 224 TIGRFAM TIGR01993 Pyr-5-nucltdase: pyrimidine 5'-nucleotidase 10 187 1.9E-57 T 11-10-2018 IPR010237 Pyrimidine 5-nucleotidase AMK58_12265 9f189745f61682b05c9aab1232cfe520 224 SUPERFAMILY SSF56784 10 217 7.09E-36 T 11-10-2018 IPR036412 HAD-like superfamily AMK58_12265 9f189745f61682b05c9aab1232cfe520 224 Gene3D G3DSA:3.40.50.1000 84 223 1.5E-25 T 11-10-2018 IPR023214 HAD superfamily AMK58_12265 9f189745f61682b05c9aab1232cfe520 224 Pfam PF13419 Haloacid dehalogenase-like hydrolase 12 188 2.0E-12 T 11-10-2018 AMK58_12265 9f189745f61682b05c9aab1232cfe520 224 Gene3D G3DSA:1.10.150.450 9 83 1.5E-8 T 11-10-2018 AMK58_12265 9f189745f61682b05c9aab1232cfe520 224 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 74 188 8.8E-11 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMK58_04775 b7263d14c87aa0a86810cf570152ee17 313 Pfam PF00005 ABC transporter 23 164 6.7E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_04775 b7263d14c87aa0a86810cf570152ee17 313 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_04775 b7263d14c87aa0a86810cf570152ee17 313 Gene3D G3DSA:3.40.50.300 1 232 1.9E-66 T 11-10-2018 AMK58_04775 b7263d14c87aa0a86810cf570152ee17 313 SUPERFAMILY SSF52540 3 228 4.77E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_04775 b7263d14c87aa0a86810cf570152ee17 313 SMART SM00382 31 210 1.6E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_00435 093bc44041d49227f947f23e5ed59067 74 SUPERFAMILY SSF89447 2 54 4.53E-12 T 11-10-2018 IPR037914 SpoVT-AbrB domain superfamily AMK58_00435 093bc44041d49227f947f23e5ed59067 74 SMART SM00966 7 52 4.3E-6 T 11-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 AMK58_00435 093bc44041d49227f947f23e5ed59067 74 Gene3D G3DSA:2.10.260.10 1 69 2.9E-10 T 11-10-2018 AMK58_00435 093bc44041d49227f947f23e5ed59067 74 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 8 47 1.6E-7 T 11-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 AMK58_13255 a41be1008f4568a26a46277a0f9cfba5 230 Gene3D G3DSA:3.90.420.10 60 229 8.7E-50 T 11-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 AMK58_13255 a41be1008f4568a26a46277a0f9cfba5 230 SUPERFAMILY SSF56524 27 229 1.44E-63 T 11-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 AMK58_13255 a41be1008f4568a26a46277a0f9cfba5 230 Pfam PF00174 Oxidoreductase molybdopterin binding domain 67 211 3.4E-38 T 11-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 AMK58_00765 6bc604f4de2caa72f8abace6fc3a0d8a 188 Pfam PF02033 Ribosome-binding factor A 15 120 5.8E-27 T 11-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 AMK58_00765 6bc604f4de2caa72f8abace6fc3a0d8a 188 SUPERFAMILY SSF89919 12 122 6.15E-30 T 11-10-2018 IPR023799 Ribosome-binding factor A domain superfamily AMK58_00765 6bc604f4de2caa72f8abace6fc3a0d8a 188 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 18 104 9.0E-21 T 11-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 AMK58_00765 6bc604f4de2caa72f8abace6fc3a0d8a 188 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 14 120 25.448 T 11-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 AMK58_00765 6bc604f4de2caa72f8abace6fc3a0d8a 188 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 14 122 5.4E-19 T 11-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 AMK58_00765 6bc604f4de2caa72f8abace6fc3a0d8a 188 Gene3D G3DSA:3.30.300.20 9 114 9.6E-25 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta AMK58_00765 6bc604f4de2caa72f8abace6fc3a0d8a 188 ProSitePatterns PS01319 Ribosome-binding factor A signature. 86 107 - T 11-10-2018 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 AMK58_28160 a23919182e2d459917fc10adc01cf7f9 340 Gene3D G3DSA:3.40.50.720 152 289 9.4E-134 T 11-10-2018 AMK58_28160 a23919182e2d459917fc10adc01cf7f9 340 SUPERFAMILY SSF50129 2 174 1.23E-56 T 11-10-2018 IPR011032 GroES-like superfamily AMK58_28160 a23919182e2d459917fc10adc01cf7f9 340 Pfam PF00107 Zinc-binding dehydrogenase 179 302 5.5E-32 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMK58_28160 a23919182e2d459917fc10adc01cf7f9 340 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 64 78 - T 11-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AMK58_28160 a23919182e2d459917fc10adc01cf7f9 340 SUPERFAMILY SSF51735 142 309 7.77E-47 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_28160 a23919182e2d459917fc10adc01cf7f9 340 SMART SM00829 14 338 6.3E-9 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMK58_28160 a23919182e2d459917fc10adc01cf7f9 340 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 135 9.2E-33 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMK58_28160 a23919182e2d459917fc10adc01cf7f9 340 Gene3D G3DSA:3.90.180.10 16 336 9.4E-134 T 11-10-2018 AMK58_04485 41cbf9717ddb2d8e2d06344766eb50dd 465 Gene3D G3DSA:3.40.50.2000 237 445 3.7E-164 T 11-10-2018 AMK58_04485 41cbf9717ddb2d8e2d06344766eb50dd 465 SUPERFAMILY SSF53756 2 461 4.5E-148 T 11-10-2018 AMK58_04485 41cbf9717ddb2d8e2d06344766eb50dd 465 Gene3D G3DSA:3.40.50.2000 19 455 3.7E-164 T 11-10-2018 AMK58_04485 41cbf9717ddb2d8e2d06344766eb50dd 465 TIGRFAM TIGR02400 trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 3 460 2.0E-180 T 11-10-2018 IPR012766 Alpha,alpha-trehalose-phosphate synthase GO:0003825|GO:0005992 KEGG: 00500+2.4.1.15 AMK58_04485 41cbf9717ddb2d8e2d06344766eb50dd 465 Pfam PF00982 Glycosyltransferase family 20 18 460 5.7E-137 T 11-10-2018 IPR001830 Glycosyl transferase, family 20 GO:0003824|GO:0005992 KEGG: 00500+2.4.1.15 AMK58_00615 67b206a7e225afc0bd15a62dfa3b5257 273 Pfam PF04519 Polymer-forming cytoskeletal 145 240 4.3E-19 T 11-10-2018 IPR007607 Bactofilin A/B AMK58_09515 c03ffc90600614ca1432e7900c8512d9 537 PRINTS PR01165 Cytochrome c oxidase subunit I signature 146 158 2.3E-152 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_09515 c03ffc90600614ca1432e7900c8512d9 537 PRINTS PR01165 Cytochrome c oxidase subunit I signature 258 279 2.3E-152 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_09515 c03ffc90600614ca1432e7900c8512d9 537 PRINTS PR01165 Cytochrome c oxidase subunit I signature 304 319 2.3E-152 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_09515 c03ffc90600614ca1432e7900c8512d9 537 PRINTS PR01165 Cytochrome c oxidase subunit I signature 328 349 2.3E-152 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_09515 c03ffc90600614ca1432e7900c8512d9 537 PRINTS PR01165 Cytochrome c oxidase subunit I signature 104 128 2.3E-152 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_09515 c03ffc90600614ca1432e7900c8512d9 537 PRINTS PR01165 Cytochrome c oxidase subunit I signature 178 196 2.3E-152 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_09515 c03ffc90600614ca1432e7900c8512d9 537 PRINTS PR01165 Cytochrome c oxidase subunit I signature 28 53 2.3E-152 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_09515 c03ffc90600614ca1432e7900c8512d9 537 PRINTS PR01165 Cytochrome c oxidase subunit I signature 207 226 2.3E-152 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_09515 c03ffc90600614ca1432e7900c8512d9 537 PRINTS PR01165 Cytochrome c oxidase subunit I signature 76 99 2.3E-152 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_09515 c03ffc90600614ca1432e7900c8512d9 537 PRINTS PR01165 Cytochrome c oxidase subunit I signature 441 462 2.3E-152 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_09515 c03ffc90600614ca1432e7900c8512d9 537 PRINTS PR01165 Cytochrome c oxidase subunit I signature 391 410 2.3E-152 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_09515 c03ffc90600614ca1432e7900c8512d9 537 PRINTS PR01165 Cytochrome c oxidase subunit I signature 363 381 2.3E-152 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_09515 c03ffc90600614ca1432e7900c8512d9 537 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 260 314 - T 11-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_09515 c03ffc90600614ca1432e7900c8512d9 537 Gene3D G3DSA:1.20.210.10 24 537 2.9E-246 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_09515 c03ffc90600614ca1432e7900c8512d9 537 SUPERFAMILY SSF81442 26 536 1.96E-222 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_09515 c03ffc90600614ca1432e7900c8512d9 537 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 29 536 1.3E-218 T 11-10-2018 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005886|GO:0015990|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 AMK58_09515 c03ffc90600614ca1432e7900c8512d9 537 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 37 482 2.2E-156 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_28200 f370f6dd874da11edc871951bf90b6a5 625 Pfam PF13432 Tetratricopeptide repeat 460 512 2.5E-5 T 11-10-2018 AMK58_28200 f370f6dd874da11edc871951bf90b6a5 625 SUPERFAMILY SSF48452 430 583 1.86E-23 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_28200 f370f6dd874da11edc871951bf90b6a5 625 Gene3D G3DSA:1.25.40.10 330 586 1.8E-30 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_28200 f370f6dd874da11edc871951bf90b6a5 625 SMART SM00028 447 480 0.0023 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_28200 f370f6dd874da11edc871951bf90b6a5 625 SMART SM00028 549 582 3.1 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_28200 f370f6dd874da11edc871951bf90b6a5 625 SMART SM00028 481 514 19.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_28910 8b74c299b031f86d5219eba41203e476 465 Pfam PF08548 Peptidase M10 serralysin C terminal 103 230 2.8E-16 T 11-10-2018 IPR013858 Peptidase M10 serralysin, C-terminal GO:0005509|GO:0005615 AMK58_28910 8b74c299b031f86d5219eba41203e476 465 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 333 351 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_28910 8b74c299b031f86d5219eba41203e476 465 SUPERFAMILY SSF55486 6 103 4.65E-23 T 11-10-2018 AMK58_28910 8b74c299b031f86d5219eba41203e476 465 Gene3D G3DSA:2.150.10.10 108 235 8.1E-64 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_28910 8b74c299b031f86d5219eba41203e476 465 SUPERFAMILY SSF51120 244 431 3.27E-18 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_28910 8b74c299b031f86d5219eba41203e476 465 SUPERFAMILY SSF51120 108 289 3.79E-24 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_28910 8b74c299b031f86d5219eba41203e476 465 PRINTS PR00313 NodO calcium binding signature 364 373 1.5E-11 T 11-10-2018 AMK58_28910 8b74c299b031f86d5219eba41203e476 465 PRINTS PR00313 NodO calcium binding signature 204 212 1.5E-11 T 11-10-2018 AMK58_28910 8b74c299b031f86d5219eba41203e476 465 PRINTS PR00313 NodO calcium binding signature 346 354 1.5E-11 T 11-10-2018 AMK58_28910 8b74c299b031f86d5219eba41203e476 465 PRINTS PR00313 NodO calcium binding signature 183 194 1.5E-11 T 11-10-2018 AMK58_28910 8b74c299b031f86d5219eba41203e476 465 Gene3D G3DSA:3.40.390.10 24 107 8.1E-64 T 11-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 AMK58_28910 8b74c299b031f86d5219eba41203e476 465 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 212 228 0.55 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_28910 8b74c299b031f86d5219eba41203e476 465 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 342 353 15.0 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_28910 8b74c299b031f86d5219eba41203e476 465 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 185 200 0.57 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_28910 8b74c299b031f86d5219eba41203e476 465 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 355 371 0.14 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_28910 8b74c299b031f86d5219eba41203e476 465 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 127 137 48.0 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_28910 8b74c299b031f86d5219eba41203e476 465 Gene3D G3DSA:2.150.10.10 314 454 4.2E-16 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_01995 ec445e060365a971606125c3fe301d86 366 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 48 363 8.5E-130 T 11-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 AMK58_01995 ec445e060365a971606125c3fe301d86 366 Gene3D G3DSA:2.30.42.10 268 366 5.4E-27 T 11-10-2018 AMK58_01995 ec445e060365a971606125c3fe301d86 366 Gene3D G3DSA:2.40.10.120 45 267 1.5E-85 T 11-10-2018 AMK58_01995 ec445e060365a971606125c3fe301d86 366 SUPERFAMILY SSF50156 231 355 2.6E-25 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 AMK58_01995 ec445e060365a971606125c3fe301d86 366 SMART SM00228 273 355 1.3E-17 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMK58_01995 ec445e060365a971606125c3fe301d86 366 SUPERFAMILY SSF50494 45 265 1.11E-65 T 11-10-2018 IPR009003 Peptidase S1, PA clan AMK58_01995 ec445e060365a971606125c3fe301d86 366 PRINTS PR00834 HtrA/DegQ protease family signature 170 194 7.1E-55 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMK58_01995 ec445e060365a971606125c3fe301d86 366 PRINTS PR00834 HtrA/DegQ protease family signature 109 121 7.1E-55 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMK58_01995 ec445e060365a971606125c3fe301d86 366 PRINTS PR00834 HtrA/DegQ protease family signature 227 244 7.1E-55 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMK58_01995 ec445e060365a971606125c3fe301d86 366 PRINTS PR00834 HtrA/DegQ protease family signature 130 150 7.1E-55 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMK58_01995 ec445e060365a971606125c3fe301d86 366 PRINTS PR00834 HtrA/DegQ protease family signature 205 222 7.1E-55 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMK58_01995 ec445e060365a971606125c3fe301d86 366 PRINTS PR00834 HtrA/DegQ protease family signature 313 325 7.1E-55 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMK58_01995 ec445e060365a971606125c3fe301d86 366 Pfam PF13365 Trypsin-like peptidase domain 99 234 9.9E-34 T 11-10-2018 AMK58_01995 ec445e060365a971606125c3fe301d86 366 Pfam PF13180 PDZ domain 273 362 1.5E-15 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMK58_04095 3fdd68ae1487951b2af1a2a061c8ad31 240 Pfam PF04172 LrgB-like family 23 236 6.1E-82 T 11-10-2018 IPR007300 CidB/LrgB family AMK58_00545 3c785f02b66d4de1ca8705a5401913f1 194 SUPERFAMILY SSF160443 98 183 4.18E-17 T 11-10-2018 IPR036063 Smr domain superfamily AMK58_00545 3c785f02b66d4de1ca8705a5401913f1 194 Gene3D G3DSA:3.30.1370.110 68 189 3.5E-40 T 11-10-2018 AMK58_00545 3c785f02b66d4de1ca8705a5401913f1 194 Pfam PF01713 Smr domain 100 183 8.3E-26 T 11-10-2018 IPR002625 Smr domain AMK58_00545 3c785f02b66d4de1ca8705a5401913f1 194 SMART SM00463 97 183 3.5E-8 T 11-10-2018 IPR002625 Smr domain AMK58_20085 5c869def684681d70d76d94c20ee46b2 582 Gene3D G3DSA:1.25.40.10 495 570 4.7E-10 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_20085 5c869def684681d70d76d94c20ee46b2 582 SMART SM00028 452 486 19.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_20085 5c869def684681d70d76d94c20ee46b2 582 SMART SM00028 48 81 470.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_20085 5c869def684681d70d76d94c20ee46b2 582 SMART SM00028 278 311 100.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_20085 5c869def684681d70d76d94c20ee46b2 582 SMART SM00028 521 554 170.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_20085 5c869def684681d70d76d94c20ee46b2 582 SMART SM00028 418 451 0.15 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_20085 5c869def684681d70d76d94c20ee46b2 582 SMART SM00028 346 379 130.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_20085 5c869def684681d70d76d94c20ee46b2 582 SMART SM00028 487 520 1.3 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_20085 5c869def684681d70d76d94c20ee46b2 582 SMART SM00028 380 413 0.024 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_20085 5c869def684681d70d76d94c20ee46b2 582 SUPERFAMILY SSF48452 52 334 1.41E-9 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_20085 5c869def684681d70d76d94c20ee46b2 582 Pfam PF13432 Tetratricopeptide repeat 422 485 0.0046 T 11-10-2018 AMK58_20085 5c869def684681d70d76d94c20ee46b2 582 Pfam PF13432 Tetratricopeptide repeat 350 408 1.7E-6 T 11-10-2018 AMK58_20085 5c869def684681d70d76d94c20ee46b2 582 Gene3D G3DSA:1.25.40.10 254 409 3.2E-15 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_20085 5c869def684681d70d76d94c20ee46b2 582 Pfam PF13414 TPR repeat 496 535 1.0E-8 T 11-10-2018 AMK58_20085 5c869def684681d70d76d94c20ee46b2 582 SUPERFAMILY SSF48452 277 409 2.76E-14 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_20085 5c869def684681d70d76d94c20ee46b2 582 SUPERFAMILY SSF48452 377 550 2.43E-32 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_20085 5c869def684681d70d76d94c20ee46b2 582 Gene3D G3DSA:1.25.40.10 47 253 1.0E-10 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_20085 5c869def684681d70d76d94c20ee46b2 582 Gene3D G3DSA:1.25.40.10 410 494 1.7E-17 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_22760 8019a0bc305856ce3192ee94558bf099 258 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 254 2.4E-47 T 11-10-2018 AMK58_22760 8019a0bc305856ce3192ee94558bf099 258 Gene3D G3DSA:3.40.50.720 1 257 5.3E-79 T 11-10-2018 AMK58_22760 8019a0bc305856ce3192ee94558bf099 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 137 153 4.4E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_22760 8019a0bc305856ce3192ee94558bf099 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 4.4E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_22760 8019a0bc305856ce3192ee94558bf099 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 4.4E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_22760 8019a0bc305856ce3192ee94558bf099 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 185 202 4.4E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_22760 8019a0bc305856ce3192ee94558bf099 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 4.4E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_22760 8019a0bc305856ce3192ee94558bf099 258 SUPERFAMILY SSF51735 6 257 5.79E-68 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_28765 afa6dfe5eac7b1ef292a7e08849b67a2 344 SUPERFAMILY SSF53756 13 340 2.06E-56 T 11-10-2018 AMK58_28765 afa6dfe5eac7b1ef292a7e08849b67a2 344 Gene3D G3DSA:3.40.50.2000 13 334 4.4E-48 T 11-10-2018 AMK58_28765 afa6dfe5eac7b1ef292a7e08849b67a2 344 Pfam PF13439 Glycosyltransferase Family 4 14 142 1.3E-6 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AMK58_28765 afa6dfe5eac7b1ef292a7e08849b67a2 344 Pfam PF00534 Glycosyl transferases group 1 230 316 1.6E-24 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 AMK58_28765 afa6dfe5eac7b1ef292a7e08849b67a2 344 Gene3D G3DSA:3.40.50.2000 139 317 4.4E-48 T 11-10-2018 AMK58_02155 3df7897c6713ba9da2864ca9c6f20e7b 565 SMART SM00283 305 559 7.9E-43 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_02155 3df7897c6713ba9da2864ca9c6f20e7b 565 Pfam PF00672 HAMP domain 217 263 1.5E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_02155 3df7897c6713ba9da2864ca9c6f20e7b 565 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 387 492 3.1E-28 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_02155 3df7897c6713ba9da2864ca9c6f20e7b 565 Gene3D G3DSA:1.10.287.950 278 563 7.2E-50 T 11-10-2018 AMK58_02155 3df7897c6713ba9da2864ca9c6f20e7b 565 SMART SM00304 215 268 4.7E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_02155 3df7897c6713ba9da2864ca9c6f20e7b 565 Gene3D G3DSA:1.20.1480.50 175 277 1.9E-19 T 11-10-2018 AMK58_02155 3df7897c6713ba9da2864ca9c6f20e7b 565 SUPERFAMILY SSF58104 244 558 2.75E-55 T 11-10-2018 AMK58_00145 078f94c0680703113d00efb5efc18a7a 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 8.5E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_00145 078f94c0680703113d00efb5efc18a7a 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 8.5E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_00145 078f94c0680703113d00efb5efc18a7a 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 8.5E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_00145 078f94c0680703113d00efb5efc18a7a 246 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 211 0.0013 T 11-10-2018 AMK58_00145 078f94c0680703113d00efb5efc18a7a 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 3.8E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_00145 078f94c0680703113d00efb5efc18a7a 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 3.8E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_00145 078f94c0680703113d00efb5efc18a7a 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 3.8E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_00145 078f94c0680703113d00efb5efc18a7a 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 3.8E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_00145 078f94c0680703113d00efb5efc18a7a 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 3.8E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_00145 078f94c0680703113d00efb5efc18a7a 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.8E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_00145 078f94c0680703113d00efb5efc18a7a 246 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 245 1.1E-61 T 11-10-2018 AMK58_00145 078f94c0680703113d00efb5efc18a7a 246 SUPERFAMILY SSF51735 6 245 2.09E-81 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_00145 078f94c0680703113d00efb5efc18a7a 246 Gene3D G3DSA:3.40.50.720 2 246 4.8E-82 T 11-10-2018 AMK58_15570 d40534c78b7788471e594d2e43249bd6 157 Pfam PF01047 MarR family 39 97 4.6E-15 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_15570 d40534c78b7788471e594d2e43249bd6 157 Gene3D G3DSA:1.10.10.10 4 144 3.0E-33 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_15570 d40534c78b7788471e594d2e43249bd6 157 SMART SM00347 32 130 9.5E-20 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_15570 d40534c78b7788471e594d2e43249bd6 157 SUPERFAMILY SSF46785 6 141 1.05E-31 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_02815 3e42ad28dbe8bcb75f952dbec3bf7a63 193 SMART SM00857 2 138 1.6E-52 T 11-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AMK58_02815 3e42ad28dbe8bcb75f952dbec3bf7a63 193 ProSitePatterns PS00397 Site-specific recombinases active site. 5 13 - T 11-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 AMK58_02815 3e42ad28dbe8bcb75f952dbec3bf7a63 193 Pfam PF02796 Helix-turn-helix domain of resolvase 140 182 7.4E-7 T 11-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 AMK58_02815 3e42ad28dbe8bcb75f952dbec3bf7a63 193 SUPERFAMILY SSF53041 2 137 3.4E-43 T 11-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 AMK58_02815 3e42ad28dbe8bcb75f952dbec3bf7a63 193 Gene3D G3DSA:3.40.50.1390 1 127 7.7E-42 T 11-10-2018 AMK58_02815 3e42ad28dbe8bcb75f952dbec3bf7a63 193 Pfam PF00239 Resolvase, N terminal domain 3 137 9.4E-44 T 11-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AMK58_03930 640d64c53dd42d592615a5c64a25bfa5 374 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 21 368 2.2E-102 T 11-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMK58_03930 640d64c53dd42d592615a5c64a25bfa5 374 Pfam PF01098 Cell cycle protein 27 368 5.2E-76 T 11-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMK58_05205 e8739e6c89234d0d29519c84b91c317d 167 Pfam PF10722 Putative bacterial sensory transduction regulator 15 144 1.4E-32 T 11-10-2018 IPR019660 Putative sensory transduction regulator YbjN AMK58_25070 ef8bac19f3c0c425f7e74e5cc34c36c4 389 PIRSF PIRSF000294 28 386 4.8E-52 T 11-10-2018 IPR026259 Di-c-type haem protein, MauG/cytochrome c peroxidase GO:0016491|GO:0020037|GO:0055114 AMK58_25070 ef8bac19f3c0c425f7e74e5cc34c36c4 389 SUPERFAMILY SSF46626 32 193 1.41E-35 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_25070 ef8bac19f3c0c425f7e74e5cc34c36c4 389 Gene3D G3DSA:1.10.760.10 33 196 2.3E-59 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_25070 ef8bac19f3c0c425f7e74e5cc34c36c4 389 Pfam PF03150 Di-haem cytochrome c peroxidase 40 209 9.4E-45 T 11-10-2018 IPR004852 Di-haem cytochrome c peroxidase GO:0016491|GO:0055114 AMK58_25070 ef8bac19f3c0c425f7e74e5cc34c36c4 389 Gene3D G3DSA:1.10.760.10 197 389 6.6E-70 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_25070 ef8bac19f3c0c425f7e74e5cc34c36c4 389 SUPERFAMILY SSF46626 187 380 4.46E-33 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_04545 c8eaf32d4f2fc7a12a6c069025252225 94 Gene3D G3DSA:3.30.70.20 5 88 4.5E-12 T 11-10-2018 AMK58_04545 c8eaf32d4f2fc7a12a6c069025252225 94 Pfam PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 16 92 6.6E-6 T 11-10-2018 AMK58_04545 c8eaf32d4f2fc7a12a6c069025252225 94 PIRSF PIRSF036548 1 94 2.2E-43 T 11-10-2018 IPR012206 Ferredoxin-like, FixX GO:0005506 AMK58_04545 c8eaf32d4f2fc7a12a6c069025252225 94 SUPERFAMILY SSF54862 9 85 1.16E-12 T 11-10-2018 AMK58_04905 e6fd6b3fb26f8d6d75466725aea52605 160 SUPERFAMILY SSF46785 2 135 4.63E-36 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_04905 e6fd6b3fb26f8d6d75466725aea52605 160 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 11-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site AMK58_04905 e6fd6b3fb26f8d6d75466725aea52605 160 Pfam PF02082 Transcriptional regulator 1 83 2.2E-27 T 11-10-2018 IPR000944 Transcription regulator Rrf2-type AMK58_04905 e6fd6b3fb26f8d6d75466725aea52605 160 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 133 7.6E-43 T 11-10-2018 IPR000944 Transcription regulator Rrf2-type AMK58_04905 e6fd6b3fb26f8d6d75466725aea52605 160 Gene3D G3DSA:1.10.10.10 1 142 6.9E-49 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_09410 84519789715bbe7e9078f20dc9884cd7 370 Pfam PF01571 Aminomethyltransferase folate-binding domain 13 258 3.5E-88 T 11-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain AMK58_09410 84519789715bbe7e9078f20dc9884cd7 370 Gene3D G3DSA:4.10.1250.10 236 280 2.7E-22 T 11-10-2018 AMK58_09410 84519789715bbe7e9078f20dc9884cd7 370 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 8 364 6.0E-109 T 11-10-2018 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 AMK58_09410 84519789715bbe7e9078f20dc9884cd7 370 Gene3D G3DSA:2.40.30.110 282 359 3.4E-29 T 11-10-2018 AMK58_09410 84519789715bbe7e9078f20dc9884cd7 370 PIRSF PIRSF006487 1 370 4.7E-87 T 11-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 AMK58_09410 84519789715bbe7e9078f20dc9884cd7 370 Gene3D G3DSA:3.30.70.1400 59 142 1.2E-81 T 11-10-2018 AMK58_09410 84519789715bbe7e9078f20dc9884cd7 370 SUPERFAMILY SSF103025 7 282 1.08E-90 T 11-10-2018 AMK58_09410 84519789715bbe7e9078f20dc9884cd7 370 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 267 360 5.6E-25 T 11-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 AMK58_09410 84519789715bbe7e9078f20dc9884cd7 370 SUPERFAMILY SSF101790 276 369 1.16E-26 T 11-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal AMK58_09410 84519789715bbe7e9078f20dc9884cd7 370 Gene3D G3DSA:3.30.1360.120 9 235 1.2E-81 T 11-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 AMK58_07590 997e1c774a76169a54abae75c8e12852 387 SUPERFAMILY SSF52768 19 370 7.19E-86 T 11-10-2018 IPR023696 Ureohydrolase domain superfamily AMK58_07590 997e1c774a76169a54abae75c8e12852 387 Pfam PF00850 Histone deacetylase domain 44 320 2.2E-59 T 11-10-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AMK58_07590 997e1c774a76169a54abae75c8e12852 387 PRINTS PR01270 Histone deacetylase superfamily signature 256 266 1.8E-17 T 11-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AMK58_07590 997e1c774a76169a54abae75c8e12852 387 PRINTS PR01270 Histone deacetylase superfamily signature 143 166 1.8E-17 T 11-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AMK58_07590 997e1c774a76169a54abae75c8e12852 387 PRINTS PR01270 Histone deacetylase superfamily signature 176 191 1.8E-17 T 11-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AMK58_07590 997e1c774a76169a54abae75c8e12852 387 Gene3D G3DSA:3.40.800.20 17 383 3.9E-93 T 11-10-2018 IPR037138 Histone deacetylase domain superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AMK58_02260 5d056eb9b0b06d38b7f89c6668844b13 294 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 97 291 9.0E-15 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_02260 5d056eb9b0b06d38b7f89c6668844b13 294 SUPERFAMILY SSF161098 55 281 1.83E-50 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_02260 5d056eb9b0b06d38b7f89c6668844b13 294 Gene3D G3DSA:1.10.3720.10 51 292 6.6E-58 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_11495 6dc781fb05f63b425219a327eafe918b 237 SMART SM00850 138 236 3.3E-28 T 11-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 AMK58_11495 6dc781fb05f63b425219a327eafe918b 237 Gene3D G3DSA:3.30.450.20 1 91 2.6E-8 T 11-10-2018 AMK58_11495 6dc781fb05f63b425219a327eafe918b 237 Pfam PF08448 PAS fold 6 106 4.9E-8 T 11-10-2018 IPR013656 PAS fold-4 AMK58_11495 6dc781fb05f63b425219a327eafe918b 237 Gene3D G3DSA:2.40.50.40 130 198 1.8E-12 T 11-10-2018 AMK58_11495 6dc781fb05f63b425219a327eafe918b 237 Pfam PF04397 LytTr DNA-binding domain 140 235 4.6E-22 T 11-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 AMK58_11495 6dc781fb05f63b425219a327eafe918b 237 SUPERFAMILY SSF55785 3 90 4.94E-9 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_25850 cdf48491b433210f4015a38cdb6058b0 145 Pfam PF04892 VanZ like family 42 115 2.4E-9 T 11-10-2018 IPR006976 VanZ-like AMK58_24685 acb24f4ca367e2c3be6f57af050472ef 291 Gene3D G3DSA:3.40.190.10 163 257 4.5E-59 T 11-10-2018 AMK58_24685 acb24f4ca367e2c3be6f57af050472ef 291 Gene3D G3DSA:3.40.190.10 103 283 4.5E-59 T 11-10-2018 AMK58_24685 acb24f4ca367e2c3be6f57af050472ef 291 Gene3D G3DSA:1.10.10.10 6 94 2.0E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_24685 acb24f4ca367e2c3be6f57af050472ef 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 2.9E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_24685 acb24f4ca367e2c3be6f57af050472ef 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 2.9E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_24685 acb24f4ca367e2c3be6f57af050472ef 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 2.9E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_24685 acb24f4ca367e2c3be6f57af050472ef 291 Pfam PF03466 LysR substrate binding domain 93 286 1.2E-36 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_24685 acb24f4ca367e2c3be6f57af050472ef 291 SUPERFAMILY SSF53850 94 288 5.43E-34 T 11-10-2018 AMK58_24685 acb24f4ca367e2c3be6f57af050472ef 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 3.3E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_24685 acb24f4ca367e2c3be6f57af050472ef 291 SUPERFAMILY SSF46785 4 86 4.66E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_03095 cd79e01ab5bba8bc9db0b92ed0a76a34 557 SUPERFAMILY SSF53649 60 484 6.67E-118 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 AMK58_03095 cd79e01ab5bba8bc9db0b92ed0a76a34 557 Gene3D G3DSA:3.30.1120.10 430 458 3.3E-95 T 11-10-2018 AMK58_03095 cd79e01ab5bba8bc9db0b92ed0a76a34 557 Gene3D G3DSA:3.40.720.10 63 429 3.3E-95 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 AMK58_03095 cd79e01ab5bba8bc9db0b92ed0a76a34 557 Pfam PF00884 Sulfatase 63 389 1.3E-59 T 11-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 AMK58_22375 18313d54034ac2bc49503a34207deb83 396 SUPERFAMILY SSF53822 52 359 2.69E-28 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMK58_22375 18313d54034ac2bc49503a34207deb83 396 Gene3D G3DSA:3.40.50.2300 41 221 2.2E-12 T 11-10-2018 AMK58_22375 18313d54034ac2bc49503a34207deb83 396 TIGRFAM TIGR03863 PQQ_ABC_bind: ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system 46 394 4.0E-146 T 11-10-2018 IPR022478 ABC transporter, substrate-binding protein, PQQ-dependent alcohol dehydrogenase system AMK58_22375 18313d54034ac2bc49503a34207deb83 396 Pfam PF13458 Periplasmic binding protein 53 210 7.6E-12 T 11-10-2018 IPR028081 Leucine-binding protein domain AMK58_22375 18313d54034ac2bc49503a34207deb83 396 Gene3D G3DSA:3.40.50.2300 279 356 7.9E-6 T 11-10-2018 AMK58_03670 2d69fd58639b5aede50c885dea767016 142 Pfam PF01957 NfeD-like C-terminal, partner-binding 6 141 9.2E-24 T 11-10-2018 IPR002810 NfeD-like, C-terminal domain AMK58_01600 9392696eae276f4a6d843028200bb0ab 241 SUPERFAMILY SSF52172 3 126 5.12E-45 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_01600 9392696eae276f4a6d843028200bb0ab 241 SMART SM00862 158 234 2.2E-26 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_01600 9392696eae276f4a6d843028200bb0ab 241 SUPERFAMILY SSF46894 139 235 1.87E-26 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMK58_01600 9392696eae276f4a6d843028200bb0ab 241 SMART SM00448 5 118 7.7E-46 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_01600 9392696eae276f4a6d843028200bb0ab 241 Gene3D G3DSA:1.10.10.10 132 239 2.3E-34 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_01600 9392696eae276f4a6d843028200bb0ab 241 Pfam PF00486 Transcriptional regulatory protein, C terminal 161 234 8.8E-23 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_01600 9392696eae276f4a6d843028200bb0ab 241 Gene3D G3DSA:3.40.50.2300 1 127 4.2E-41 T 11-10-2018 AMK58_01600 9392696eae276f4a6d843028200bb0ab 241 Pfam PF00072 Response regulator receiver domain 8 119 2.0E-31 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_11785 9c48da944ba29f41153972a832d91c62 237 Gene3D G3DSA:3.30.450.40 52 233 8.0E-32 T 11-10-2018 IPR029016 GAF-like domain superfamily AMK58_11785 9c48da944ba29f41153972a832d91c62 237 Pfam PF04340 Protein of unknown function, DUF484 12 232 3.2E-35 T 11-10-2018 IPR007435 Protein of unknown function DUF484 AMK58_01070 434f67cfa0c972ff9971cf01b1f0b1c4 262 Gene3D G3DSA:3.40.50.720 3 256 6.2E-88 T 11-10-2018 AMK58_01070 434f67cfa0c972ff9971cf01b1f0b1c4 262 SUPERFAMILY SSF69572 2 255 1.14E-90 T 11-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 AMK58_01070 434f67cfa0c972ff9971cf01b1f0b1c4 262 Pfam PF00899 ThiF family 11 249 1.1E-63 T 11-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 AMK58_27415 e333ba386829456a4c1d22004664aede 325 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 14 128 9.2E-18 T 11-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMK58_27415 e333ba386829456a4c1d22004664aede 325 Gene3D G3DSA:3.30.360.10 131 325 2.2E-75 T 11-10-2018 AMK58_27415 e333ba386829456a4c1d22004664aede 325 Gene3D G3DSA:3.40.50.720 7 130 4.1E-31 T 11-10-2018 AMK58_27415 e333ba386829456a4c1d22004664aede 325 SUPERFAMILY SSF51735 9 179 1.32E-38 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_28580 be06c787a3708dec963ec4832993d217 405 Gene3D G3DSA:2.140.10.20 18 403 7.0E-54 T 11-10-2018 IPR003143 Cytochrome cd1-nitrite reductase, C-terminal domain superfamily AMK58_28580 be06c787a3708dec963ec4832993d217 405 Pfam PF02239 Cytochrome D1 heme domain 33 399 2.2E-108 T 11-10-2018 AMK58_28580 be06c787a3708dec963ec4832993d217 405 SUPERFAMILY SSF51004 35 403 3.4E-76 T 11-10-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily AMK58_16550 5a608c190512488b5709f338e583c27b 313 SUPERFAMILY SSF53850 33 311 1.19E-52 T 11-10-2018 AMK58_16550 5a608c190512488b5709f338e583c27b 313 Gene3D G3DSA:3.40.190.120 137 250 1.1E-90 T 11-10-2018 AMK58_16550 5a608c190512488b5709f338e583c27b 313 Gene3D G3DSA:3.40.190.10 36 310 1.1E-90 T 11-10-2018 AMK58_16550 5a608c190512488b5709f338e583c27b 313 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 33 307 1.0E-50 T 11-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 AMK58_13300 a1002e4e2497f4d0e4e6ee54d631f5d2 166 Pfam PF00156 Phosphoribosyl transferase domain 15 155 3.0E-15 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMK58_13300 a1002e4e2497f4d0e4e6ee54d631f5d2 166 Hamap MF_01903 Xanthine phosphoribosyltransferase [gpt]. 7 163 42.214 T 11-10-2018 IPR023747 Xanthine-guanine phosphoribosyltransferase GO:0000310 KEGG: 00230+2.4.2.22 AMK58_13300 a1002e4e2497f4d0e4e6ee54d631f5d2 166 SUPERFAMILY SSF53271 9 152 9.57E-32 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like AMK58_13300 a1002e4e2497f4d0e4e6ee54d631f5d2 166 Gene3D G3DSA:3.40.50.2020 8 162 8.0E-42 T 11-10-2018 AMK58_06870 aa9c0b916763dc48acbc3bd27a9b4ae7 341 SUPERFAMILY SSF48179 197 316 5.95E-30 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMK58_06870 aa9c0b916763dc48acbc3bd27a9b4ae7 341 Gene3D G3DSA:1.10.1040.10 196 330 1.4E-43 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMK58_06870 aa9c0b916763dc48acbc3bd27a9b4ae7 341 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 104 8.1E-24 T 11-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain AMK58_06870 aa9c0b916763dc48acbc3bd27a9b4ae7 341 Gene3D G3DSA:3.40.50.720 1 193 4.7E-66 T 11-10-2018 AMK58_06870 aa9c0b916763dc48acbc3bd27a9b4ae7 341 SUPERFAMILY SSF51735 1 184 3.94E-16 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_06870 aa9c0b916763dc48acbc3bd27a9b4ae7 341 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 197 316 4.7E-28 T 11-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain AMK58_26720 d11932bea1591bc4478150dc812faee0 304 SUPERFAMILY SSF53955 28 159 2.67E-32 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily AMK58_26720 d11932bea1591bc4478150dc812faee0 304 Pfam PF01464 Transglycosylase SLT domain 37 146 2.5E-17 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 AMK58_26720 d11932bea1591bc4478150dc812faee0 304 Pfam PF05036 Sporulation related domain 222 301 8.4E-9 T 11-10-2018 IPR007730 Sporulation-like domain GO:0042834 AMK58_26720 d11932bea1591bc4478150dc812faee0 304 Gene3D G3DSA:1.10.530.10 30 163 9.0E-31 T 11-10-2018 AMK58_27915 356f3ae9b03129cf3410a45f0a6b9d50 160 Hamap MF_00476 Nickel-responsive regulator [nikR]. 1 132 27.403 T 11-10-2018 IPR022988 Nickel-responsive transcriptional regulator NikR GO:0003677|GO:0006355|GO:0010045|GO:0016151 AMK58_27915 356f3ae9b03129cf3410a45f0a6b9d50 160 SUPERFAMILY SSF55021 51 132 9.61E-26 T 11-10-2018 AMK58_27915 356f3ae9b03129cf3410a45f0a6b9d50 160 Gene3D G3DSA:1.10.1220.10 1 46 2.7E-20 T 11-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AMK58_27915 356f3ae9b03129cf3410a45f0a6b9d50 160 Gene3D G3DSA:3.30.70.1150 50 134 5.0E-30 T 11-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal AMK58_27915 356f3ae9b03129cf3410a45f0a6b9d50 160 Pfam PF08753 NikR C terminal nickel binding domain 54 129 1.7E-26 T 11-10-2018 IPR014864 Transcription factor, NikR, nickel binding C-terminal AMK58_27915 356f3ae9b03129cf3410a45f0a6b9d50 160 SUPERFAMILY SSF47598 1 42 9.67E-11 T 11-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 AMK58_27915 356f3ae9b03129cf3410a45f0a6b9d50 160 Pfam PF01402 Ribbon-helix-helix protein, copG family 3 41 1.9E-11 T 11-10-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 AMK58_27915 356f3ae9b03129cf3410a45f0a6b9d50 160 TIGRFAM TIGR02793 nikR: nickel-responsive transcriptional regulator NikR 2 131 2.2E-58 T 11-10-2018 IPR014160 Nickel-responsive transcriptional regulator NikR, proteobacteria GO:0010045|GO:0016151 AMK58_16385 810ddd1884f3552df9b34a1fcc8af12d 294 SUPERFAMILY SSF46689 5 82 3.14E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_16385 810ddd1884f3552df9b34a1fcc8af12d 294 SUPERFAMILY SSF53697 98 268 8.01E-33 T 11-10-2018 AMK58_16385 810ddd1884f3552df9b34a1fcc8af12d 294 Gene3D G3DSA:1.10.10.10 3 82 7.4E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_16385 810ddd1884f3552df9b34a1fcc8af12d 294 Pfam PF01418 Helix-turn-helix domain, rpiR family 6 77 4.2E-21 T 11-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 AMK58_16385 810ddd1884f3552df9b34a1fcc8af12d 294 Pfam PF01380 SIS domain 128 254 1.2E-12 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AMK58_16385 810ddd1884f3552df9b34a1fcc8af12d 294 Gene3D G3DSA:3.40.50.10490 95 280 8.2E-36 T 11-10-2018 AMK58_16870 a4c462f14e82c10cc3d47212072f2e6b 246 Gene3D G3DSA:2.60.120.620 15 238 9.4E-8 T 11-10-2018 AMK58_25775 37dd72877fbe06c695a1c855e882b00a 165 Pfam PF14196 L-2-amino-thiazoline-4-carboxylic acid hydrolase 10 150 4.9E-22 T 11-10-2018 IPR026002 L-2-amino-thiazoline-4-carboxylic acid hydrolase AMK58_02020 9fd4619483ea63071310faf0543d301a 251 Pfam PF02602 Uroporphyrinogen-III synthase HemD 17 238 3.0E-33 T 11-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMK58_02020 9fd4619483ea63071310faf0543d301a 251 Gene3D G3DSA:3.40.50.10090 1 115 5.2E-21 T 11-10-2018 AMK58_02020 9fd4619483ea63071310faf0543d301a 251 SUPERFAMILY SSF69618 4 242 2.75E-43 T 11-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMK58_02020 9fd4619483ea63071310faf0543d301a 251 Gene3D G3DSA:3.40.50.10090 118 243 1.1E-12 T 11-10-2018 AMK58_25650 871bc29a5af9f319a8a62c60f48d5492 76 Pfam PF02805 Metal binding domain of Ada 6 68 5.2E-33 T 11-10-2018 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 AMK58_25650 871bc29a5af9f319a8a62c60f48d5492 76 Gene3D G3DSA:3.40.10.10 1 70 1.2E-33 T 11-10-2018 IPR035451 Ada-like domain superfamily AMK58_25650 871bc29a5af9f319a8a62c60f48d5492 76 SUPERFAMILY SSF57884 2 73 1.19E-32 T 11-10-2018 IPR035451 Ada-like domain superfamily AMK58_01210 46a4ea7f4558642f46d2984f93f4ffc8 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 62 8.2E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_01210 46a4ea7f4558642f46d2984f93f4ffc8 307 SUPERFAMILY SSF53850 89 283 1.28E-38 T 11-10-2018 AMK58_01210 46a4ea7f4558642f46d2984f93f4ffc8 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.3E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_01210 46a4ea7f4558642f46d2984f93f4ffc8 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.3E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_01210 46a4ea7f4558642f46d2984f93f4ffc8 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.3E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_01210 46a4ea7f4558642f46d2984f93f4ffc8 307 Gene3D G3DSA:1.10.10.10 1 88 7.3E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_01210 46a4ea7f4558642f46d2984f93f4ffc8 307 Pfam PF03466 LysR substrate binding domain 86 282 2.6E-42 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_01210 46a4ea7f4558642f46d2984f93f4ffc8 307 Gene3D G3DSA:3.40.190.290 90 286 1.2E-35 T 11-10-2018 AMK58_01210 46a4ea7f4558642f46d2984f93f4ffc8 307 SUPERFAMILY SSF46785 1 110 1.46E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_12485 fc5895024a60aff7b54edbe3df33d089 299 Gene3D G3DSA:1.10.443.10 101 288 3.4E-55 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMK58_12485 fc5895024a60aff7b54edbe3df33d089 299 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 1 294 53.564 T 11-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 AMK58_12485 fc5895024a60aff7b54edbe3df33d089 299 SUPERFAMILY SSF56349 6 287 3.24E-53 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMK58_12485 fc5895024a60aff7b54edbe3df33d089 299 Gene3D G3DSA:1.10.150.130 1 89 1.6E-17 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal AMK58_12485 fc5895024a60aff7b54edbe3df33d089 299 Pfam PF00589 Phage integrase family 102 278 3.8E-41 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMK58_12485 fc5895024a60aff7b54edbe3df33d089 299 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 1 294 51.404 T 11-10-2018 IPR023009 Tyrosine recombinase XerC/XerD AMK58_12485 fc5895024a60aff7b54edbe3df33d089 299 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 2 80 3.7E-17 T 11-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 AMK58_21445 efa41af50c566672d4496aa42e98145a 178 SUPERFAMILY SSF52141 7 168 3.14E-38 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMK58_21445 efa41af50c566672d4496aa42e98145a 178 Pfam PF03167 Uracil DNA glycosylase superfamily 12 162 7.3E-18 T 11-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMK58_21445 efa41af50c566672d4496aa42e98145a 178 Gene3D G3DSA:3.40.470.10 8 174 4.2E-55 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMK58_15655 9c22c23611a832df15e8e6ba52c4ba3d 327 SUPERFAMILY SSF52518 3 326 3.57E-97 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMK58_15655 9c22c23611a832df15e8e6ba52c4ba3d 327 Gene3D G3DSA:3.40.50.970 2 327 5.6E-119 T 11-10-2018 AMK58_15655 9c22c23611a832df15e8e6ba52c4ba3d 327 Pfam PF00676 Dehydrogenase E1 component 19 314 2.8E-100 T 11-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 AMK58_28565 147a500fd2fcf8d60e887a64e15b9fd7 147 Pfam PF13404 AsnC-type helix-turn-helix domain 1 44 6.4E-9 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMK58_28565 147a500fd2fcf8d60e887a64e15b9fd7 147 Gene3D G3DSA:3.30.70.3460 66 143 1.5E-17 T 11-10-2018 AMK58_28565 147a500fd2fcf8d60e887a64e15b9fd7 147 SMART SM00344 1 109 8.2E-4 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMK58_28565 147a500fd2fcf8d60e887a64e15b9fd7 147 Gene3D G3DSA:1.10.10.10 1 53 6.8E-8 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_06225 813cc400d98186e72edab5bc3c5cfa1a 415 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 6 415 4.1E-150 T 11-10-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 AMK58_06225 813cc400d98186e72edab5bc3c5cfa1a 415 Pfam PF12704 MacB-like periplasmic core domain 30 244 2.8E-20 T 11-10-2018 IPR025857 MacB-like periplasmic core domain AMK58_06225 813cc400d98186e72edab5bc3c5cfa1a 415 Pfam PF02687 FtsX-like permease family 301 408 3.5E-12 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 AMK58_02035 564b053226c3447e85cecb3344f03df0 357 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 1.1E-44 T 11-10-2018 IPR017861 Kae1/TsaD family AMK58_02035 564b053226c3447e85cecb3344f03df0 357 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 76 96 1.1E-44 T 11-10-2018 IPR017861 Kae1/TsaD family AMK58_02035 564b053226c3447e85cecb3344f03df0 357 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 270 279 1.1E-44 T 11-10-2018 IPR017861 Kae1/TsaD family AMK58_02035 564b053226c3447e85cecb3344f03df0 357 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 97 116 1.1E-44 T 11-10-2018 IPR017861 Kae1/TsaD family AMK58_02035 564b053226c3447e85cecb3344f03df0 357 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 130 142 1.1E-44 T 11-10-2018 IPR017861 Kae1/TsaD family AMK58_02035 564b053226c3447e85cecb3344f03df0 357 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 153 174 1.1E-44 T 11-10-2018 IPR017861 Kae1/TsaD family AMK58_02035 564b053226c3447e85cecb3344f03df0 357 Gene3D G3DSA:3.30.420.40 128 300 5.8E-121 T 11-10-2018 AMK58_02035 564b053226c3447e85cecb3344f03df0 357 SUPERFAMILY SSF53067 3 123 4.99E-29 T 11-10-2018 AMK58_02035 564b053226c3447e85cecb3344f03df0 357 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 313 2.1E-97 T 11-10-2018 IPR017861 Kae1/TsaD family AMK58_02035 564b053226c3447e85cecb3344f03df0 357 SUPERFAMILY SSF53067 102 316 1.51E-41 T 11-10-2018 AMK58_02035 564b053226c3447e85cecb3344f03df0 357 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 320 6.3E-126 T 11-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 AMK58_02035 564b053226c3447e85cecb3344f03df0 357 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 338 65.159 T 11-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 AMK58_02035 564b053226c3447e85cecb3344f03df0 357 Pfam PF00814 Glycoprotease family 23 314 6.4E-97 T 11-10-2018 IPR000905 Gcp-like domain AMK58_02035 564b053226c3447e85cecb3344f03df0 357 Gene3D G3DSA:3.30.420.40 3 321 5.8E-121 T 11-10-2018 AMK58_26285 9aa180f4ecf054ed014045ecbb4b03ed 375 SUPERFAMILY SSF55347 123 354 1.9E-60 T 11-10-2018 AMK58_26285 9aa180f4ecf054ed014045ecbb4b03ed 375 Gene3D G3DSA:3.30.360.10 123 310 9.3E-66 T 11-10-2018 AMK58_26285 9aa180f4ecf054ed014045ecbb4b03ed 375 SUPERFAMILY SSF51735 1 175 1.17E-20 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_26285 9aa180f4ecf054ed014045ecbb4b03ed 375 Gene3D G3DSA:3.40.50.720 4 346 9.3E-66 T 11-10-2018 AMK58_26285 9aa180f4ecf054ed014045ecbb4b03ed 375 Pfam PF03435 Saccharopine dehydrogenase NADP binding domain 4 100 3.5E-18 T 11-10-2018 IPR005097 Saccharopine dehydrogenase, NADP binding domain GO:0016491|GO:0055114 AMK58_26285 9aa180f4ecf054ed014045ecbb4b03ed 375 Pfam PF16653 Saccharopine dehydrogenase C-terminal domain 122 342 1.1E-13 T 11-10-2018 IPR032095 Saccharopine dehydrogenase, C-terminal Reactome: R-HSA-71064 AMK58_10500 3160f39bd8eb6b9f1a18fad00dcde2ab 190 Pfam PF02563 Polysaccharide biosynthesis/export protein 37 111 1.6E-20 T 11-10-2018 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 AMK58_10500 3160f39bd8eb6b9f1a18fad00dcde2ab 190 Pfam PF10531 SLBB domain 118 160 2.8E-7 T 11-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_10500 3160f39bd8eb6b9f1a18fad00dcde2ab 190 Gene3D G3DSA:3.10.560.10 92 186 4.3E-12 T 11-10-2018 AMK58_03570 d79eb01dd1515c9244364c683f712548 175 Pfam PF03232 Ubiquinone biosynthesis protein COQ7 11 175 1.5E-65 T 11-10-2018 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 Reactome: R-HSA-2142789 AMK58_03570 d79eb01dd1515c9244364c683f712548 175 Hamap MF_01658 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [coq7]. 1 175 27.24 T 11-10-2018 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 Reactome: R-HSA-2142789 AMK58_03570 d79eb01dd1515c9244364c683f712548 175 SUPERFAMILY SSF47240 11 142 3.01E-18 T 11-10-2018 IPR009078 Ferritin-like superfamily AMK58_03160 07ff9d4151c900884d59517de2f39709 413 Pfam PF02515 CoA-transferase family III 26 390 6.0E-128 T 11-10-2018 IPR003673 CoA-transferase family III GO:0003824 AMK58_03160 07ff9d4151c900884d59517de2f39709 413 Gene3D G3DSA:3.30.1540.10 245 342 2.4E-134 T 11-10-2018 AMK58_03160 07ff9d4151c900884d59517de2f39709 413 Gene3D G3DSA:3.40.50.10540 26 406 2.4E-134 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily AMK58_03160 07ff9d4151c900884d59517de2f39709 413 SUPERFAMILY SSF89796 25 413 2.35E-135 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily AMK58_08190 eed445029d873d37f63dade003ec2eb8 185 Gene3D G3DSA:3.30.160.110 108 143 3.0E-13 T 11-10-2018 AMK58_08190 eed445029d873d37f63dade003ec2eb8 185 SUPERFAMILY SSF75615 103 165 3.92E-14 T 11-10-2018 AMK58_08190 eed445029d873d37f63dade003ec2eb8 185 Gene3D G3DSA:3.40.50.720 1 106 1.4E-16 T 11-10-2018 AMK58_08190 eed445029d873d37f63dade003ec2eb8 185 SUPERFAMILY SSF51735 2 107 3.15E-8 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_08190 eed445029d873d37f63dade003ec2eb8 185 Pfam PF14824 Sirohaem biosynthesis protein central 114 139 5.4E-8 T 11-10-2018 IPR028281 Siroheme synthase, central domain KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMK58_08190 eed445029d873d37f63dade003ec2eb8 185 Pfam PF13241 Putative NAD(P)-binding 5 110 2.3E-15 T 11-10-2018 AMK58_08190 eed445029d873d37f63dade003ec2eb8 185 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 9 162 3.7E-25 T 11-10-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMK58_06180 d71a4da002b6a9984d7b41dcd6788522 264 SUPERFAMILY SSF50037 214 258 3.3E-5 T 11-10-2018 IPR008988 Transcriptional repressor, C-terminal AMK58_06180 d71a4da002b6a9984d7b41dcd6788522 264 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 20 256 4.3E-46 T 11-10-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMK58_06180 d71a4da002b6a9984d7b41dcd6788522 264 Pfam PF02237 Biotin protein ligase C terminal domain 212 258 5.3E-9 T 11-10-2018 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMK58_06180 d71a4da002b6a9984d7b41dcd6788522 264 Pfam PF16917 Biotin/lipoate A/B protein ligase family 68 206 2.9E-17 T 11-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 AMK58_06180 d71a4da002b6a9984d7b41dcd6788522 264 Gene3D G3DSA:3.30.930.10 15 210 1.4E-55 T 11-10-2018 AMK58_06180 d71a4da002b6a9984d7b41dcd6788522 264 SUPERFAMILY SSF55681 12 208 1.62E-53 T 11-10-2018 AMK58_06180 d71a4da002b6a9984d7b41dcd6788522 264 Gene3D G3DSA:2.30.30.100 212 258 5.5E-8 T 11-10-2018 AMK58_24955 f5cfdca547e7d315d0578afa3adfb254 180 SUPERFAMILY SSF48403 30 173 1.14E-34 T 11-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily AMK58_24955 f5cfdca547e7d315d0578afa3adfb254 180 Gene3D G3DSA:1.25.40.20 7 179 3.5E-41 T 11-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily AMK58_24955 f5cfdca547e7d315d0578afa3adfb254 180 SMART SM00248 87 116 0.15 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMK58_24955 f5cfdca547e7d315d0578afa3adfb254 180 SMART SM00248 54 83 9.8E-4 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMK58_24955 f5cfdca547e7d315d0578afa3adfb254 180 SMART SM00248 120 149 1.2E-4 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMK58_24955 f5cfdca547e7d315d0578afa3adfb254 180 PRINTS PR01415 Ankyrin repeat signature 88 103 1.2E-5 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMK58_24955 f5cfdca547e7d315d0578afa3adfb254 180 PRINTS PR01415 Ankyrin repeat signature 136 150 1.2E-5 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMK58_24955 f5cfdca547e7d315d0578afa3adfb254 180 Pfam PF12796 Ankyrin repeats (3 copies) 59 151 5.2E-17 T 11-10-2018 IPR020683 Ankyrin repeat-containing domain AMK58_11470 76fa0fa64d95953355966a42bc20d826 219 Gene3D G3DSA:1.10.357.10 78 219 7.3E-10 T 11-10-2018 AMK58_11470 76fa0fa64d95953355966a42bc20d826 219 SUPERFAMILY SSF46689 22 86 4.31E-17 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_11470 76fa0fa64d95953355966a42bc20d826 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 55 78 4.1E-8 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_11470 76fa0fa64d95953355966a42bc20d826 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 47 4.1E-8 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_11470 76fa0fa64d95953355966a42bc20d826 219 Gene3D G3DSA:1.10.10.60 19 77 7.9E-19 T 11-10-2018 AMK58_11470 76fa0fa64d95953355966a42bc20d826 219 Pfam PF00440 Bacterial regulatory proteins, tetR family 34 80 2.2E-16 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_11470 76fa0fa64d95953355966a42bc20d826 219 SUPERFAMILY SSF48498 96 214 1.64E-7 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMK58_28845 38d77759bfcc5953ddd6946ece061154 151 SUPERFAMILY SSF53335 3 126 9.04E-9 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_28845 38d77759bfcc5953ddd6946ece061154 151 Gene3D G3DSA:3.40.50.150 1 131 8.9E-8 T 11-10-2018 AMK58_16630 876ad2ab78bc5481a6fbf7905d585dcc 262 Pfam PF00005 ABC transporter 37 185 1.6E-38 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_16630 876ad2ab78bc5481a6fbf7905d585dcc 262 SUPERFAMILY SSF52540 21 255 1.52E-81 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_16630 876ad2ab78bc5481a6fbf7905d585dcc 262 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_16630 876ad2ab78bc5481a6fbf7905d585dcc 262 SMART SM00382 46 233 5.0E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_16630 876ad2ab78bc5481a6fbf7905d585dcc 262 Gene3D G3DSA:3.40.50.300 18 261 2.6E-79 T 11-10-2018 AMK58_16630 876ad2ab78bc5481a6fbf7905d585dcc 262 PIRSF PIRSF039085 18 261 3.8E-110 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AMK58_05490 5aa04fef52a7f211d1b6060292f6fc19 298 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 76 285 3.8E-62 T 11-10-2018 AMK58_05490 5aa04fef52a7f211d1b6060292f6fc19 298 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 85 255 7.8E-30 T 11-10-2018 AMK58_05490 5aa04fef52a7f211d1b6060292f6fc19 298 Pfam PF12710 haloacid dehalogenase-like hydrolase 87 253 1.3E-16 T 11-10-2018 AMK58_05490 5aa04fef52a7f211d1b6060292f6fc19 298 SUPERFAMILY SSF56784 82 291 4.55E-43 T 11-10-2018 IPR036412 HAD-like superfamily AMK58_05490 5aa04fef52a7f211d1b6060292f6fc19 298 Gene3D G3DSA:3.40.50.1000 41 287 6.4E-65 T 11-10-2018 IPR023214 HAD superfamily AMK58_23740 f102bf0609ab51198e7fbfcc39858c86 338 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 62 321 6.2E-15 T 11-10-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 AMK58_23740 f102bf0609ab51198e7fbfcc39858c86 338 SUPERFAMILY SSF51197 67 323 6.41E-31 T 11-10-2018 AMK58_23740 f102bf0609ab51198e7fbfcc39858c86 338 Gene3D G3DSA:3.60.130.10 71 325 2.4E-29 T 11-10-2018 AMK58_24400 18d4a26859936810fc393ddcee7d9f14 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 2.8E-24 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_24400 18d4a26859936810fc393ddcee7d9f14 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 9.2E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_24400 18d4a26859936810fc393ddcee7d9f14 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 9.2E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_24400 18d4a26859936810fc393ddcee7d9f14 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 9.2E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_24400 18d4a26859936810fc393ddcee7d9f14 296 SUPERFAMILY SSF53850 90 293 3.57E-41 T 11-10-2018 AMK58_24400 18d4a26859936810fc393ddcee7d9f14 296 Gene3D G3DSA:1.10.10.10 1 85 1.0E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_24400 18d4a26859936810fc393ddcee7d9f14 296 Gene3D G3DSA:3.40.190.290 90 291 1.3E-48 T 11-10-2018 AMK58_24400 18d4a26859936810fc393ddcee7d9f14 296 Pfam PF03466 LysR substrate binding domain 88 290 3.9E-38 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_24400 18d4a26859936810fc393ddcee7d9f14 296 SUPERFAMILY SSF46785 1 111 4.21E-26 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_21130 13df74b9fc1812a18d4a7ee1cfdc6f94 222 SUPERFAMILY SSF52833 1 101 3.77E-18 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_21130 13df74b9fc1812a18d4a7ee1cfdc6f94 222 SUPERFAMILY SSF47616 70 216 7.39E-24 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMK58_21130 13df74b9fc1812a18d4a7ee1cfdc6f94 222 Pfam PF00043 Glutathione S-transferase, C-terminal domain 145 198 2.1E-8 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal AMK58_21130 13df74b9fc1812a18d4a7ee1cfdc6f94 222 Pfam PF13417 Glutathione S-transferase, N-terminal domain 4 77 2.1E-12 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMK58_21130 13df74b9fc1812a18d4a7ee1cfdc6f94 222 Gene3D G3DSA:1.20.1050.10 79 197 8.0E-83 T 11-10-2018 AMK58_21130 13df74b9fc1812a18d4a7ee1cfdc6f94 222 Gene3D G3DSA:3.40.30.10 4 222 8.0E-83 T 11-10-2018 AMK58_00795 94090d42e44dae6f00d149f2a0f8fe2c 184 Pfam PF03073 TspO/MBR family 29 164 1.8E-11 T 11-10-2018 IPR004307 TspO/MBR-related protein GO:0016021 AMK58_00795 94090d42e44dae6f00d149f2a0f8fe2c 184 Gene3D G3DSA:1.20.1260.100 22 171 1.5E-6 T 11-10-2018 IPR038330 TspO/MBR-related superfamily AMK58_26815 d23bbf1d8d7e9f8606314581e039259f 311 SUPERFAMILY SSF46785 1 84 1.82E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_26815 d23bbf1d8d7e9f8606314581e039259f 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 5.6E-21 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_26815 d23bbf1d8d7e9f8606314581e039259f 311 Gene3D G3DSA:1.10.10.10 1 89 6.6E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_26815 d23bbf1d8d7e9f8606314581e039259f 311 SUPERFAMILY SSF53850 85 272 2.99E-26 T 11-10-2018 AMK58_26815 d23bbf1d8d7e9f8606314581e039259f 311 Gene3D G3DSA:3.40.190.290 90 281 2.6E-23 T 11-10-2018 AMK58_26815 d23bbf1d8d7e9f8606314581e039259f 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.1E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_26815 d23bbf1d8d7e9f8606314581e039259f 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.1E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_26815 d23bbf1d8d7e9f8606314581e039259f 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.1E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_26815 d23bbf1d8d7e9f8606314581e039259f 311 Pfam PF03466 LysR substrate binding domain 86 272 3.2E-29 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_18130 d12e5e302dfbac9017f97ed6a3e43379 308 Gene3D G3DSA:1.10.3720.10 96 303 9.5E-23 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_18130 d12e5e302dfbac9017f97ed6a3e43379 308 SUPERFAMILY SSF161098 101 288 2.62E-28 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_18130 d12e5e302dfbac9017f97ed6a3e43379 308 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 27 77 7.9E-15 T 11-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AMK58_18130 d12e5e302dfbac9017f97ed6a3e43379 308 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 124 307 1.1E-29 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_26800 5e294ae7145dfc86a8bcbd9fd1d4235f 240 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 134 162 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMK58_26800 5e294ae7145dfc86a8bcbd9fd1d4235f 240 TIGRFAM TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase 3 239 9.3E-107 T 11-10-2018 IPR011283 Acetoacetyl-CoA reductase GO:0005737|GO:0018454|GO:0042619|GO:0055114 KEGG: 00630+1.1.1.36|KEGG: 00650+1.1.1.36|MetaCyc: PWY-5676|MetaCyc: PWY-5741|MetaCyc: PWY-7216|MetaCyc: PWY-7948 AMK58_26800 5e294ae7145dfc86a8bcbd9fd1d4235f 240 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 135 1.7E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_26800 5e294ae7145dfc86a8bcbd9fd1d4235f 240 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 1.7E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_26800 5e294ae7145dfc86a8bcbd9fd1d4235f 240 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 1.7E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_26800 5e294ae7145dfc86a8bcbd9fd1d4235f 240 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 178 1.5E-6 T 11-10-2018 AMK58_26800 5e294ae7145dfc86a8bcbd9fd1d4235f 240 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 238 7.3E-61 T 11-10-2018 AMK58_26800 5e294ae7145dfc86a8bcbd9fd1d4235f 240 SUPERFAMILY SSF51735 3 239 5.11E-77 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_26800 5e294ae7145dfc86a8bcbd9fd1d4235f 240 Gene3D G3DSA:3.40.50.720 1 240 9.6E-78 T 11-10-2018 AMK58_26800 5e294ae7145dfc86a8bcbd9fd1d4235f 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 3.4E-46 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_26800 5e294ae7145dfc86a8bcbd9fd1d4235f 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 3.4E-46 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_26800 5e294ae7145dfc86a8bcbd9fd1d4235f 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 201 221 3.4E-46 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_26800 5e294ae7145dfc86a8bcbd9fd1d4235f 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 3.4E-46 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_26800 5e294ae7145dfc86a8bcbd9fd1d4235f 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 3.4E-46 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_26800 5e294ae7145dfc86a8bcbd9fd1d4235f 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 3.4E-46 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_03755 50b2b28a4c3da8906c533c4acac818c9 402 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 212 229 - T 11-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMK58_03755 50b2b28a4c3da8906c533c4acac818c9 402 Gene3D G3DSA:3.30.420.40 206 402 8.6E-73 T 11-10-2018 AMK58_03755 50b2b28a4c3da8906c533c4acac818c9 402 PIRSF PIRSF000722 9 402 4.3E-138 T 11-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMK58_03755 50b2b28a4c3da8906c533c4acac818c9 402 Gene3D G3DSA:3.30.420.40 2 204 1.1E-59 T 11-10-2018 AMK58_03755 50b2b28a4c3da8906c533c4acac818c9 402 SUPERFAMILY SSF53067 169 398 1.08E-80 T 11-10-2018 AMK58_03755 50b2b28a4c3da8906c533c4acac818c9 402 Hamap MF_00020 Acetate kinase [ackA]. 1 402 158.984 T 11-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMK58_03755 50b2b28a4c3da8906c533c4acac818c9 402 PRINTS PR00471 Acetate kinase family signature 12 23 5.3E-40 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMK58_03755 50b2b28a4c3da8906c533c4acac818c9 402 PRINTS PR00471 Acetate kinase family signature 328 344 5.3E-40 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMK58_03755 50b2b28a4c3da8906c533c4acac818c9 402 PRINTS PR00471 Acetate kinase family signature 306 319 5.3E-40 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMK58_03755 50b2b28a4c3da8906c533c4acac818c9 402 PRINTS PR00471 Acetate kinase family signature 212 233 5.3E-40 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMK58_03755 50b2b28a4c3da8906c533c4acac818c9 402 PRINTS PR00471 Acetate kinase family signature 183 196 5.3E-40 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMK58_03755 50b2b28a4c3da8906c533c4acac818c9 402 PRINTS PR00471 Acetate kinase family signature 380 392 5.3E-40 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMK58_03755 50b2b28a4c3da8906c533c4acac818c9 402 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 12 23 - T 11-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMK58_03755 50b2b28a4c3da8906c533c4acac818c9 402 TIGRFAM TIGR00016 ackA: acetate kinase 11 394 3.0E-110 T 11-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMK58_03755 50b2b28a4c3da8906c533c4acac818c9 402 Pfam PF00871 Acetokinase family 12 392 1.2E-109 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMK58_03755 50b2b28a4c3da8906c533c4acac818c9 402 SUPERFAMILY SSF53067 11 205 4.63E-59 T 11-10-2018 AMK58_02595 49a7737bc67d16e32df7ec972fbe101c 107 Pfam PF00893 Small Multidrug Resistance protein 1 93 1.1E-29 T 11-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 AMK58_02595 49a7737bc67d16e32df7ec972fbe101c 107 SUPERFAMILY SSF103481 5 104 4.71E-20 T 11-10-2018 AMK58_02595 49a7737bc67d16e32df7ec972fbe101c 107 Gene3D G3DSA:1.10.3730.20 1 106 2.2E-37 T 11-10-2018 AMK58_03195 76894a1504adfdbdf8d48b858f67a0db 342 Pfam PF02653 Branched-chain amino acid transport system / permease component 56 314 4.3E-36 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_13100 029ae2d0aae1f2d53f930f84ca73e156 75 TIGRFAM TIGR02976 phageshock_pspB: phage shock protein B 1 74 1.6E-24 T 11-10-2018 IPR009554 Phage shock protein B GO:0006355|GO:0009271 AMK58_13100 029ae2d0aae1f2d53f930f84ca73e156 75 Pfam PF06667 Phage shock protein B 3 73 7.4E-29 T 11-10-2018 IPR009554 Phage shock protein B GO:0006355|GO:0009271 AMK58_08255 a8f1d1ab5d8c22b206d6d08e44259181 61 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 55 2.2E-26 T 11-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_08255 a8f1d1ab5d8c22b206d6d08e44259181 61 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 55 21.277 T 11-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_08255 a8f1d1ab5d8c22b206d6d08e44259181 61 Pfam PF01783 Ribosomal L32p protein family 2 56 7.7E-27 T 11-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_08255 a8f1d1ab5d8c22b206d6d08e44259181 61 SUPERFAMILY SSF57829 1 55 3.66E-23 T 11-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 AMK58_08685 cacafb3cc54fdc8d7d8dffc7cf270e3e 151 Pfam PF13404 AsnC-type helix-turn-helix domain 1 42 1.2E-16 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMK58_08685 cacafb3cc54fdc8d7d8dffc7cf270e3e 151 Gene3D G3DSA:1.10.10.10 2 53 1.6E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_08685 cacafb3cc54fdc8d7d8dffc7cf270e3e 151 Gene3D G3DSA:3.30.70.920 54 135 1.2E-25 T 11-10-2018 AMK58_08685 cacafb3cc54fdc8d7d8dffc7cf270e3e 151 SMART SM00344 1 108 2.2E-37 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMK58_08685 cacafb3cc54fdc8d7d8dffc7cf270e3e 151 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 3.5E-12 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMK58_08685 cacafb3cc54fdc8d7d8dffc7cf270e3e 151 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 3.5E-12 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMK58_08685 cacafb3cc54fdc8d7d8dffc7cf270e3e 151 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 3.5E-12 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMK58_08685 cacafb3cc54fdc8d7d8dffc7cf270e3e 151 SUPERFAMILY SSF54909 61 148 2.28E-22 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel AMK58_08685 cacafb3cc54fdc8d7d8dffc7cf270e3e 151 SUPERFAMILY SSF46785 1 60 8.83E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_08685 cacafb3cc54fdc8d7d8dffc7cf270e3e 151 Pfam PF01037 Lrp/AsnC ligand binding domain 72 138 1.3E-21 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMK58_27750 6c81304058cb641837520d1a17c57fa2 254 SMART SM00866 103 245 2.2E-15 T 11-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AMK58_27750 6c81304058cb641837520d1a17c57fa2 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 56 72 3.3E-8 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_27750 6c81304058cb641837520d1a17c57fa2 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 56 3.3E-8 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_27750 6c81304058cb641837520d1a17c57fa2 254 Pfam PF00392 Bacterial regulatory proteins, gntR family 21 82 3.9E-19 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_27750 6c81304058cb641837520d1a17c57fa2 254 Pfam PF07702 UTRA domain 109 245 2.0E-19 T 11-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AMK58_27750 6c81304058cb641837520d1a17c57fa2 254 Gene3D G3DSA:1.10.10.10 12 86 1.9E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_27750 6c81304058cb641837520d1a17c57fa2 254 SUPERFAMILY SSF64288 70 252 1.88E-33 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily AMK58_27750 6c81304058cb641837520d1a17c57fa2 254 Gene3D G3DSA:3.40.1410.10 92 254 5.1E-28 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily AMK58_27750 6c81304058cb641837520d1a17c57fa2 254 SMART SM00345 23 82 1.6E-18 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_27750 6c81304058cb641837520d1a17c57fa2 254 SUPERFAMILY SSF46785 16 86 6.83E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_20185 cddc482c8d1948c2d9cf6f6c3cf53e7e 557 Pfam PF13432 Tetratricopeptide repeat 110 174 1.3E-5 T 11-10-2018 AMK58_20185 cddc482c8d1948c2d9cf6f6c3cf53e7e 557 SUPERFAMILY SSF48452 35 290 1.06E-24 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_20185 cddc482c8d1948c2d9cf6f6c3cf53e7e 557 Gene3D G3DSA:1.25.40.10 117 318 3.6E-14 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_20185 cddc482c8d1948c2d9cf6f6c3cf53e7e 557 SMART SM00028 72 105 11.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_20185 cddc482c8d1948c2d9cf6f6c3cf53e7e 557 SMART SM00028 38 71 29.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_20185 cddc482c8d1948c2d9cf6f6c3cf53e7e 557 SMART SM00028 106 139 150.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_20185 cddc482c8d1948c2d9cf6f6c3cf53e7e 557 SMART SM00028 140 173 2.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_20185 cddc482c8d1948c2d9cf6f6c3cf53e7e 557 Pfam PF14559 Tetratricopeptide repeat 50 108 6.5E-7 T 11-10-2018 AMK58_20185 cddc482c8d1948c2d9cf6f6c3cf53e7e 557 Gene3D G3DSA:1.25.40.10 7 113 3.2E-18 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_28635 c5a514f3614037ddee4628dc90723e05 450 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 182 238 - T 11-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_28635 c5a514f3614037ddee4628dc90723e05 450 SUPERFAMILY SSF81442 3 440 6.54E-96 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_28635 c5a514f3614037ddee4628dc90723e05 450 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 7 415 8.9E-84 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_28635 c5a514f3614037ddee4628dc90723e05 450 Gene3D G3DSA:1.20.210.10 1 438 2.0E-133 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_26095 296ff09e9f09e585083cc7da0dd6fa64 250 Gene3D G3DSA:3.40.50.720 1 250 3.6E-80 T 11-10-2018 AMK58_26095 296ff09e9f09e585083cc7da0dd6fa64 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 3.7E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_26095 296ff09e9f09e585083cc7da0dd6fa64 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 3.7E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_26095 296ff09e9f09e585083cc7da0dd6fa64 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 3.7E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_26095 296ff09e9f09e585083cc7da0dd6fa64 250 SUPERFAMILY SSF51735 6 249 5.56E-81 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_26095 296ff09e9f09e585083cc7da0dd6fa64 250 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMK58_26095 296ff09e9f09e585083cc7da0dd6fa64 250 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 247 2.2E-62 T 11-10-2018 AMK58_26095 296ff09e9f09e585083cc7da0dd6fa64 250 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 188 0.0081 T 11-10-2018 AMK58_26095 296ff09e9f09e585083cc7da0dd6fa64 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 3.2E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_26095 296ff09e9f09e585083cc7da0dd6fa64 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 3.2E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_26095 296ff09e9f09e585083cc7da0dd6fa64 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 3.2E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_26095 296ff09e9f09e585083cc7da0dd6fa64 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 3.2E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_26095 296ff09e9f09e585083cc7da0dd6fa64 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 3.2E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_26095 296ff09e9f09e585083cc7da0dd6fa64 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 3.2E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_10945 7488c9f70dfaeaee500d264f2cb444a3 318 SUPERFAMILY SSF52374 17 178 7.88E-33 T 11-10-2018 AMK58_10945 7488c9f70dfaeaee500d264f2cb444a3 318 Pfam PF01687 Riboflavin kinase 185 310 1.8E-36 T 11-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 AMK58_10945 7488c9f70dfaeaee500d264f2cb444a3 318 PIRSF PIRSF004491 1 317 3.1E-97 T 11-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 AMK58_10945 7488c9f70dfaeaee500d264f2cb444a3 318 SMART SM00904 184 311 1.7E-60 T 11-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 AMK58_10945 7488c9f70dfaeaee500d264f2cb444a3 318 Gene3D G3DSA:3.40.50.620 1 186 3.0E-58 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_10945 7488c9f70dfaeaee500d264f2cb444a3 318 SUPERFAMILY SSF82114 175 313 6.98E-42 T 11-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 AMK58_10945 7488c9f70dfaeaee500d264f2cb444a3 318 Pfam PF06574 FAD synthetase 12 166 2.0E-52 T 11-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 AMK58_10945 7488c9f70dfaeaee500d264f2cb444a3 318 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 19 310 1.1E-80 T 11-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 AMK58_10945 7488c9f70dfaeaee500d264f2cb444a3 318 Gene3D G3DSA:2.40.30.30 187 317 5.2E-41 T 11-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 AMK58_10640 61dfd6deb40ae4a2461773740b073c2b 773 Gene3D G3DSA:2.20.110.10 596 671 1.2E-9 T 11-10-2018 AMK58_10640 61dfd6deb40ae4a2461773740b073c2b 773 Gene3D G3DSA:2.20.110.10 672 766 1.1E-9 T 11-10-2018 AMK58_10640 61dfd6deb40ae4a2461773740b073c2b 773 Gene3D G3DSA:3.40.50.1460 23 268 4.1E-29 T 11-10-2018 AMK58_10640 61dfd6deb40ae4a2461773740b073c2b 773 Pfam PF08239 Bacterial SH3 domain 338 389 3.0E-12 T 11-10-2018 IPR003646 SH3-like domain, bacterial-type AMK58_10640 61dfd6deb40ae4a2461773740b073c2b 773 Pfam PF08239 Bacterial SH3 domain 428 479 2.2E-6 T 11-10-2018 IPR003646 SH3-like domain, bacterial-type AMK58_10640 61dfd6deb40ae4a2461773740b073c2b 773 SMART SM00287 329 393 0.018 T 11-10-2018 IPR003646 SH3-like domain, bacterial-type AMK58_10640 61dfd6deb40ae4a2461773740b073c2b 773 SMART SM00287 419 482 0.042 T 11-10-2018 IPR003646 SH3-like domain, bacterial-type AMK58_10640 61dfd6deb40ae4a2461773740b073c2b 773 SUPERFAMILY SSF52129 24 268 2.54E-24 T 11-10-2018 IPR029030 Caspase-like domain superfamily AMK58_10640 61dfd6deb40ae4a2461773740b073c2b 773 Gene3D G3DSA:2.30.30.40 330 390 1.3E-11 T 11-10-2018 AMK58_10640 61dfd6deb40ae4a2461773740b073c2b 773 SMART SM00698 644 665 6.3E-4 T 11-10-2018 IPR003409 MORN motif AMK58_10640 61dfd6deb40ae4a2461773740b073c2b 773 SMART SM00698 667 688 0.6 T 11-10-2018 IPR003409 MORN motif AMK58_10640 61dfd6deb40ae4a2461773740b073c2b 773 SMART SM00698 611 642 0.63 T 11-10-2018 IPR003409 MORN motif AMK58_10640 61dfd6deb40ae4a2461773740b073c2b 773 SMART SM00698 690 711 4.1 T 11-10-2018 IPR003409 MORN motif AMK58_10640 61dfd6deb40ae4a2461773740b073c2b 773 SUPERFAMILY SSF82185 640 766 7.85E-26 T 11-10-2018 AMK58_10640 61dfd6deb40ae4a2461773740b073c2b 773 Pfam PF02493 MORN repeat 669 690 2.9E-4 T 11-10-2018 IPR003409 MORN motif AMK58_10640 61dfd6deb40ae4a2461773740b073c2b 773 Pfam PF02493 MORN repeat 599 612 4.9 T 11-10-2018 IPR003409 MORN motif AMK58_10640 61dfd6deb40ae4a2461773740b073c2b 773 Pfam PF02493 MORN repeat 646 668 4.8E-7 T 11-10-2018 IPR003409 MORN motif AMK58_10640 61dfd6deb40ae4a2461773740b073c2b 773 Pfam PF02493 MORN repeat 692 714 0.79 T 11-10-2018 IPR003409 MORN motif AMK58_10640 61dfd6deb40ae4a2461773740b073c2b 773 Pfam PF02493 MORN repeat 632 644 1.4 T 11-10-2018 IPR003409 MORN motif AMK58_10640 61dfd6deb40ae4a2461773740b073c2b 773 Pfam PF00656 Caspase domain 38 257 8.7E-15 T 11-10-2018 AMK58_09945 bceb63d3eb16c7421c32d96f7cfb108b 167 SUPERFAMILY SSF88659 95 156 3.49E-17 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMK58_09945 bceb63d3eb16c7421c32d96f7cfb108b 167 SUPERFAMILY SSF88946 5 80 3.61E-15 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMK58_09945 bceb63d3eb16c7421c32d96f7cfb108b 167 Pfam PF08281 Sigma-70, region 4 101 151 1.7E-16 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMK58_09945 bceb63d3eb16c7421c32d96f7cfb108b 167 Pfam PF04542 Sigma-70 region 2 9 72 4.0E-10 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMK58_09945 bceb63d3eb16c7421c32d96f7cfb108b 167 Gene3D G3DSA:1.10.10.10 93 157 2.8E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_09945 bceb63d3eb16c7421c32d96f7cfb108b 167 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 10 154 4.9E-19 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMK58_09945 bceb63d3eb16c7421c32d96f7cfb108b 167 Gene3D G3DSA:1.10.1740.10 2 64 3.3E-19 T 11-10-2018 AMK58_05445 dd9e86ab1ba90e153af3ba90cedf0638 322 Gene3D G3DSA:3.40.50.2300 45 291 3.4E-100 T 11-10-2018 AMK58_05445 dd9e86ab1ba90e153af3ba90cedf0638 322 Pfam PF04392 ABC transporter substrate binding protein 28 319 5.9E-107 T 11-10-2018 IPR007487 ABC transporter, substrate-binding protein AMK58_05445 dd9e86ab1ba90e153af3ba90cedf0638 322 Gene3D G3DSA:3.40.50.2300 142 313 3.4E-100 T 11-10-2018 AMK58_05445 dd9e86ab1ba90e153af3ba90cedf0638 322 SUPERFAMILY SSF53822 35 287 3.47E-24 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMK58_02190 11fa7b7732a2e583339a5858329cc426 229 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 173 211 1.3E-6 T 11-10-2018 IPR003111 Lon, substrate-binding domain AMK58_02190 11fa7b7732a2e583339a5858329cc426 229 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 17 120 5.1E-15 T 11-10-2018 IPR003111 Lon, substrate-binding domain AMK58_02190 11fa7b7732a2e583339a5858329cc426 229 Gene3D G3DSA:2.30.130.40 9 122 1.0E-27 T 11-10-2018 AMK58_02190 11fa7b7732a2e583339a5858329cc426 229 SUPERFAMILY SSF88697 16 211 4.97E-46 T 11-10-2018 IPR015947 PUA-like superfamily AMK58_02190 11fa7b7732a2e583339a5858329cc426 229 SMART SM00464 16 213 2.4E-10 T 11-10-2018 IPR003111 Lon, substrate-binding domain AMK58_13670 70877576a14879c65d1542901c5f8150 112 SUPERFAMILY SSF54913 1 112 6.99E-45 T 11-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta AMK58_13670 70877576a14879c65d1542901c5f8150 112 PIRSF PIRSF039144 1 112 5.4E-54 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMK58_13670 70877576a14879c65d1542901c5f8150 112 Gene3D G3DSA:3.30.70.120 1 112 1.3E-46 T 11-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal AMK58_13670 70877576a14879c65d1542901c5f8150 112 PRINTS PR00340 P-II protein signature 83 103 2.2E-42 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMK58_13670 70877576a14879c65d1542901c5f8150 112 PRINTS PR00340 P-II protein signature 2 17 2.2E-42 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMK58_13670 70877576a14879c65d1542901c5f8150 112 PRINTS PR00340 P-II protein signature 52 75 2.2E-42 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMK58_13670 70877576a14879c65d1542901c5f8150 112 PRINTS PR00340 P-II protein signature 23 41 2.2E-42 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMK58_13670 70877576a14879c65d1542901c5f8150 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 1.1E-43 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMK58_13670 70877576a14879c65d1542901c5f8150 112 SMART SM00938 4 105 8.8E-66 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMK58_13670 70877576a14879c65d1542901c5f8150 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 11-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 AMK58_13670 70877576a14879c65d1542901c5f8150 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 11-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 AMK58_07005 9ae10c4266aba347eb9085c2113ade3a 192 SUPERFAMILY SSF51161 16 181 1.29E-45 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily AMK58_07005 9ae10c4266aba347eb9085c2113ade3a 192 Gene3D G3DSA:2.160.10.10 15 186 1.7E-59 T 11-10-2018 AMK58_07005 9ae10c4266aba347eb9085c2113ade3a 192 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 101 135 3.8E-6 T 11-10-2018 IPR001451 Hexapeptide repeat AMK58_17295 78283d5baf6fb897bac3761bf339a152 337 Gene3D G3DSA:3.30.360.10 131 320 2.9E-128 T 11-10-2018 AMK58_17295 78283d5baf6fb897bac3761bf339a152 337 TIGRFAM TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase 10 335 2.5E-113 T 11-10-2018 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMK58_17295 78283d5baf6fb897bac3761bf339a152 337 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 10 123 8.5E-31 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AMK58_17295 78283d5baf6fb897bac3761bf339a152 337 PIRSF PIRSF000148 8 337 1.1E-116 T 11-10-2018 AMK58_17295 78283d5baf6fb897bac3761bf339a152 337 Gene3D G3DSA:3.40.50.720 11 334 2.9E-128 T 11-10-2018 AMK58_17295 78283d5baf6fb897bac3761bf339a152 337 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 142 323 1.7E-50 T 11-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMK58_17295 78283d5baf6fb897bac3761bf339a152 337 SUPERFAMILY SSF55347 132 324 1.82E-70 T 11-10-2018 AMK58_17295 78283d5baf6fb897bac3761bf339a152 337 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 8 337 33.611 T 11-10-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMK58_17295 78283d5baf6fb897bac3761bf339a152 337 SMART SM00859 10 125 1.9E-33 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AMK58_17295 78283d5baf6fb897bac3761bf339a152 337 SUPERFAMILY SSF51735 10 159 1.52E-44 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_01490 ec0bbffd833528a631f9889dd4d41999 119 Gene3D G3DSA:3.30.1200.10 6 115 1.1E-27 T 11-10-2018 IPR036591 YggU-like superfamily AMK58_01490 ec0bbffd833528a631f9889dd4d41999 119 SMART SM01152 13 94 2.1E-33 T 11-10-2018 IPR003746 Protein of unknown function DUF167 AMK58_01490 ec0bbffd833528a631f9889dd4d41999 119 SUPERFAMILY SSF69786 11 101 1.28E-24 T 11-10-2018 IPR036591 YggU-like superfamily AMK58_01490 ec0bbffd833528a631f9889dd4d41999 119 Hamap MF_00634 UPF0235 protein YggU [yggU]. 13 105 19.314 T 11-10-2018 IPR003746 Protein of unknown function DUF167 AMK58_01490 ec0bbffd833528a631f9889dd4d41999 119 Pfam PF02594 Uncharacterised ACR, YggU family COG1872 16 92 2.0E-25 T 11-10-2018 IPR003746 Protein of unknown function DUF167 AMK58_17185 1f542d733a49c093f1c9290db30c281e 155 Gene3D G3DSA:3.90.1010.10 1 153 4.1E-54 T 11-10-2018 AMK58_17185 1f542d733a49c093f1c9290db30c281e 155 SUPERFAMILY SSF82649 1 148 3.4E-47 T 11-10-2018 AMK58_17185 1f542d733a49c093f1c9290db30c281e 155 Pfam PF01592 NifU-like N terminal domain 9 90 2.0E-20 T 11-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 AMK58_17185 1f542d733a49c093f1c9290db30c281e 155 TIGRFAM TIGR01994 SUF_scaf_2: SUF system FeS assembly protein, NifU family 5 146 2.6E-46 T 11-10-2018 AMK58_04455 4a6eef5370320232f68010396478ee8f 126 Gene3D G3DSA:2.60.120.10 19 113 1.3E-35 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_04455 4a6eef5370320232f68010396478ee8f 126 SUPERFAMILY SSF51182 31 110 1.5E-15 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily AMK58_04455 4a6eef5370320232f68010396478ee8f 126 Pfam PF07883 Cupin domain 53 109 1.5E-9 T 11-10-2018 IPR013096 Cupin 2, conserved barrel AMK58_23450 deb0f12e247227037a26ffd4c25a0bdc 133 SUPERFAMILY SSF53062 1 130 9.81E-38 T 11-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 AMK58_23450 deb0f12e247227037a26ffd4c25a0bdc 133 Pfam PF03610 PTS system fructose IIA component 3 112 7.4E-31 T 11-10-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 AMK58_23450 deb0f12e247227037a26ffd4c25a0bdc 133 Gene3D G3DSA:3.40.50.510 1 132 1.2E-40 T 11-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 AMK58_04215 401f0b6363cfef5e7a224d55dd8dfe67 133 Gene3D G3DSA:3.40.50.9100 1 133 2.0E-57 T 11-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AMK58_04215 401f0b6363cfef5e7a224d55dd8dfe67 133 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 1 127 2.0E-42 T 11-10-2018 AMK58_04215 401f0b6363cfef5e7a224d55dd8dfe67 133 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 133 63.116 T 11-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AMK58_04215 401f0b6363cfef5e7a224d55dd8dfe67 133 Pfam PF01220 Dehydroquinase class II 1 126 5.7E-53 T 11-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AMK58_04215 401f0b6363cfef5e7a224d55dd8dfe67 133 PIRSF PIRSF001399 1 133 5.1E-57 T 11-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AMK58_04215 401f0b6363cfef5e7a224d55dd8dfe67 133 SUPERFAMILY SSF52304 1 131 9.94E-55 T 11-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AMK58_04215 401f0b6363cfef5e7a224d55dd8dfe67 133 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 1 129 1.3E-53 T 11-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AMK58_17845 f2081dd838d012f2c7f4662104648244 250 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 6 239 4.6E-100 T 11-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 AMK58_17845 f2081dd838d012f2c7f4662104648244 250 SUPERFAMILY SSF63892 5 243 1.57E-96 T 11-10-2018 IPR036130 Pyridoxine 5'-phosphate synthase GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 AMK58_17845 f2081dd838d012f2c7f4662104648244 250 Gene3D G3DSA:3.20.20.70 1 249 3.9E-102 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_17845 f2081dd838d012f2c7f4662104648244 250 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 244 123.702 T 11-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 AMK58_17845 f2081dd838d012f2c7f4662104648244 250 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 6 240 2.6E-86 T 11-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 AMK58_12195 5f611febd643d8b770bed98d43ad69cb 229 Pfam PF13280 WYL domain 138 227 2.7E-13 T 11-10-2018 IPR026881 WYL domain AMK58_12195 5f611febd643d8b770bed98d43ad69cb 229 Gene3D G3DSA:1.10.10.10 1 64 2.2E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_12195 5f611febd643d8b770bed98d43ad69cb 229 Pfam PF08279 HTH domain 6 59 8.9E-20 T 11-10-2018 IPR013196 Helix-turn-helix, type 11 AMK58_12195 5f611febd643d8b770bed98d43ad69cb 229 SUPERFAMILY SSF46785 3 62 6.63E-12 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_21050 3abca18ef2c5c24b892799bf922a7046 253 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 19 247 1.9E-84 T 11-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 AMK58_21050 3abca18ef2c5c24b892799bf922a7046 253 Pfam PF08241 Methyltransferase domain 74 168 5.0E-19 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 AMK58_21050 3abca18ef2c5c24b892799bf922a7046 253 SUPERFAMILY SSF53335 20 251 3.7E-42 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_21050 3abca18ef2c5c24b892799bf922a7046 253 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 18 253 39.175 T 11-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 AMK58_21050 3abca18ef2c5c24b892799bf922a7046 253 Gene3D G3DSA:3.40.50.150 18 252 2.7E-70 T 11-10-2018 AMK58_10275 e6be7aacb071ba4e1241add5a1de4e18 258 SMART SM00895 110 234 8.1E-21 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_10275 e6be7aacb071ba4e1241add5a1de4e18 258 SUPERFAMILY SSF46785 19 90 1.43E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_10275 e6be7aacb071ba4e1241add5a1de4e18 258 Gene3D G3DSA:1.10.10.10 18 90 8.9E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_10275 e6be7aacb071ba4e1241add5a1de4e18 258 Pfam PF00392 Bacterial regulatory proteins, gntR family 25 86 3.3E-20 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_10275 e6be7aacb071ba4e1241add5a1de4e18 258 Pfam PF07729 FCD domain 110 232 6.4E-24 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_10275 e6be7aacb071ba4e1241add5a1de4e18 258 SUPERFAMILY SSF48008 107 240 4.97E-25 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_10275 e6be7aacb071ba4e1241add5a1de4e18 258 SMART SM00345 27 86 6.9E-22 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_10275 e6be7aacb071ba4e1241add5a1de4e18 258 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 60 76 1.6E-9 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_10275 e6be7aacb071ba4e1241add5a1de4e18 258 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 46 60 1.6E-9 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_10275 e6be7aacb071ba4e1241add5a1de4e18 258 Gene3D G3DSA:1.20.120.530 105 247 4.0E-28 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_14490 989c3115eff8ba02ee6236f0c33fbb27 502 SUPERFAMILY SSF48452 14 206 9.48E-28 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_14490 989c3115eff8ba02ee6236f0c33fbb27 502 SUPERFAMILY SSF53756 235 490 3.01E-25 T 11-10-2018 AMK58_14490 989c3115eff8ba02ee6236f0c33fbb27 502 Pfam PF13432 Tetratricopeptide repeat 160 202 0.003 T 11-10-2018 AMK58_14490 989c3115eff8ba02ee6236f0c33fbb27 502 Pfam PF13432 Tetratricopeptide repeat 19 81 0.0038 T 11-10-2018 AMK58_14490 989c3115eff8ba02ee6236f0c33fbb27 502 Gene3D G3DSA:1.25.40.10 7 213 4.5E-34 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_14490 989c3115eff8ba02ee6236f0c33fbb27 502 SMART SM00028 47 80 1.2 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14490 989c3115eff8ba02ee6236f0c33fbb27 502 SMART SM00028 149 182 0.62 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14490 989c3115eff8ba02ee6236f0c33fbb27 502 SMART SM00028 115 148 2.3 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18180 02bc34e081a9b38adf57f36e7e17b959 404 Gene3D G3DSA:3.20.20.140 61 359 3.5E-164 T 11-10-2018 AMK58_18180 02bc34e081a9b38adf57f36e7e17b959 404 TIGRFAM TIGR01224 hutI: imidazolonepropionase 22 397 9.4E-146 T 11-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AMK58_18180 02bc34e081a9b38adf57f36e7e17b959 404 Pfam PF01979 Amidohydrolase family 57 398 2.6E-19 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AMK58_18180 02bc34e081a9b38adf57f36e7e17b959 404 SUPERFAMILY SSF51556 60 360 5.11E-88 T 11-10-2018 IPR032466 Metal-dependent hydrolase AMK58_18180 02bc34e081a9b38adf57f36e7e17b959 404 Gene3D G3DSA:2.30.40.10 14 396 3.5E-164 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMK58_18180 02bc34e081a9b38adf57f36e7e17b959 404 Hamap MF_00372 Imidazolonepropionase [hutI]. 4 399 43.29 T 11-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AMK58_18180 02bc34e081a9b38adf57f36e7e17b959 404 SUPERFAMILY SSF51338 3 399 2.25E-29 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMK58_13915 197b15c2abd2d13267194c84991efd37 241 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 113 184 3.2E-16 T 11-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 AMK58_13915 197b15c2abd2d13267194c84991efd37 241 SUPERFAMILY SSF56214 112 235 5.49E-25 T 11-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 AMK58_13915 197b15c2abd2d13267194c84991efd37 241 Gene3D G3DSA:3.90.470.20 10 152 1.9E-22 T 11-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 AMK58_13915 197b15c2abd2d13267194c84991efd37 241 SUPERFAMILY SSF56214 18 98 1.44E-15 T 11-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 AMK58_06785 e59050b485ac2240de97ff733d0d2161 599 SUPERFAMILY SSF64182 69 480 1.96E-113 T 11-10-2018 IPR038763 DHH phosphoesterase superfamily AMK58_06785 e59050b485ac2240de97ff733d0d2161 599 Gene3D G3DSA:3.10.310.30 343 472 1.4E-26 T 11-10-2018 AMK58_06785 e59050b485ac2240de97ff733d0d2161 599 Pfam PF01368 DHH family 96 197 1.4E-8 T 11-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AMK58_06785 e59050b485ac2240de97ff733d0d2161 599 Gene3D G3DSA:3.90.1640.30 70 342 1.9E-86 T 11-10-2018 AMK58_06785 e59050b485ac2240de97ff733d0d2161 599 Pfam PF02272 DHHA1 domain 338 464 1.0E-18 T 11-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 AMK58_06785 e59050b485ac2240de97ff733d0d2161 599 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 41 592 2.0E-160 T 11-10-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 AMK58_26435 ee220ddea5902f4515e560c449bd1836 251 SUPERFAMILY SSF48008 99 222 4.45E-27 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_26435 ee220ddea5902f4515e560c449bd1836 251 Gene3D G3DSA:1.10.10.10 24 87 6.5E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_26435 ee220ddea5902f4515e560c449bd1836 251 SMART SM00895 96 220 5.6E-17 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_26435 ee220ddea5902f4515e560c449bd1836 251 SMART SM00345 28 86 6.0E-16 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_26435 ee220ddea5902f4515e560c449bd1836 251 Pfam PF07729 FCD domain 100 219 4.7E-27 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_26435 ee220ddea5902f4515e560c449bd1836 251 SUPERFAMILY SSF46785 25 90 8.88E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_26435 ee220ddea5902f4515e560c449bd1836 251 Pfam PF00392 Bacterial regulatory proteins, gntR family 27 86 9.1E-17 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_26435 ee220ddea5902f4515e560c449bd1836 251 Gene3D G3DSA:1.20.120.530 95 230 1.2E-26 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_07275 960eba76756ae935ec342cdb4baf2bfe 346 Pfam PF13505 Outer membrane protein beta-barrel domain 10 213 2.9E-22 T 11-10-2018 IPR027385 Outer membrane protein beta-barrel AMK58_07275 960eba76756ae935ec342cdb4baf2bfe 346 Gene3D G3DSA:2.40.160.20 22 213 1.9E-32 T 11-10-2018 AMK58_07275 960eba76756ae935ec342cdb4baf2bfe 346 PRINTS PR01021 OMPA domain signature 273 288 3.9E-12 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMK58_07275 960eba76756ae935ec342cdb4baf2bfe 346 PRINTS PR01021 OMPA domain signature 243 265 3.9E-12 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMK58_07275 960eba76756ae935ec342cdb4baf2bfe 346 PRINTS PR01021 OMPA domain signature 288 304 3.9E-12 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMK58_07275 960eba76756ae935ec342cdb4baf2bfe 346 Pfam PF00691 OmpA family 242 337 5.9E-18 T 11-10-2018 IPR006665 OmpA-like domain AMK58_07275 960eba76756ae935ec342cdb4baf2bfe 346 Gene3D G3DSA:3.30.1330.60 225 343 4.6E-29 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMK58_07275 960eba76756ae935ec342cdb4baf2bfe 346 SUPERFAMILY SSF56925 23 218 5.49E-29 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel AMK58_07275 960eba76756ae935ec342cdb4baf2bfe 346 SUPERFAMILY SSF103088 226 343 3.92E-28 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMK58_24055 05f54eb100267b551f009019a8baebdc 362 Gene3D G3DSA:1.10.287.470 85 157 3.5E-66 T 11-10-2018 AMK58_24055 05f54eb100267b551f009019a8baebdc 362 Gene3D G3DSA:2.40.420.20 29 350 3.5E-66 T 11-10-2018 AMK58_24055 05f54eb100267b551f009019a8baebdc 362 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 27 351 6.7E-71 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMK58_24055 05f54eb100267b551f009019a8baebdc 362 SUPERFAMILY SSF111369 43 270 2.48E-24 T 11-10-2018 AMK58_24055 05f54eb100267b551f009019a8baebdc 362 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 49 264 1.5E-21 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMK58_24055 05f54eb100267b551f009019a8baebdc 362 Gene3D G3DSA:2.40.50.100 51 197 3.5E-66 T 11-10-2018 AMK58_24055 05f54eb100267b551f009019a8baebdc 362 Gene3D G3DSA:2.40.30.170 36 273 3.5E-66 T 11-10-2018 AMK58_00315 46722c6779ee689f085ae99182eed3c8 385 Pfam PF13609 Gram-negative porin 10 357 3.7E-48 T 11-10-2018 AMK58_00315 46722c6779ee689f085ae99182eed3c8 385 Gene3D G3DSA:2.40.160.10 28 368 1.4E-41 T 11-10-2018 IPR023614 Porin domain superfamily AMK58_00315 46722c6779ee689f085ae99182eed3c8 385 SUPERFAMILY SSF56935 18 385 2.14E-33 T 11-10-2018 AMK58_01640 d8b3d866178cae6799529182bad919a2 326 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 1 281 37.187 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMK58_01640 d8b3d866178cae6799529182bad919a2 326 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 15 281 2.2E-108 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMK58_01640 d8b3d866178cae6799529182bad919a2 326 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 200 217 7.8E-37 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMK58_01640 d8b3d866178cae6799529182bad919a2 326 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 229 240 7.8E-37 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMK58_01640 d8b3d866178cae6799529182bad919a2 326 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 129 143 7.8E-37 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMK58_01640 d8b3d866178cae6799529182bad919a2 326 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 163 181 7.8E-37 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMK58_01640 d8b3d866178cae6799529182bad919a2 326 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 251 260 7.8E-37 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMK58_01640 d8b3d866178cae6799529182bad919a2 326 Gene3D G3DSA:3.90.226.10 25 283 2.1E-77 T 11-10-2018 AMK58_01640 d8b3d866178cae6799529182bad919a2 326 SUPERFAMILY SSF52096 25 281 1.78E-81 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMK58_01640 d8b3d866178cae6799529182bad919a2 326 Pfam PF01039 Carboxyl transferase domain 93 241 1.7E-19 T 11-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 AMK58_10430 e0ce4d115c49bc27a4f3bf22e9402cda 124 SUPERFAMILY SSF54736 53 124 1.24E-25 T 11-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like AMK58_10430 e0ce4d115c49bc27a4f3bf22e9402cda 124 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 1 124 24.688 T 11-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_10430 e0ce4d115c49bc27a4f3bf22e9402cda 124 SUPERFAMILY SSF48300 3 60 8.24E-16 T 11-10-2018 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_10430 e0ce4d115c49bc27a4f3bf22e9402cda 124 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 58 124 1.8E-31 T 11-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_10430 e0ce4d115c49bc27a4f3bf22e9402cda 124 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 60 124 6.0E-23 T 11-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_10430 e0ce4d115c49bc27a4f3bf22e9402cda 124 Gene3D G3DSA:3.30.1390.10 54 124 2.7E-32 T 11-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like AMK58_10430 e0ce4d115c49bc27a4f3bf22e9402cda 124 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 5 50 3.7E-19 T 11-10-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_10430 e0ce4d115c49bc27a4f3bf22e9402cda 124 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 124 4.5E-48 T 11-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_10430 e0ce4d115c49bc27a4f3bf22e9402cda 124 Gene3D G3DSA:1.20.5.710 3 53 4.2E-17 T 11-10-2018 AMK58_17610 2138d11fddc77477d14cb4f17362a70b 328 Gene3D G3DSA:3.20.20.70 8 249 2.3E-80 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_17610 2138d11fddc77477d14cb4f17362a70b 328 PIRSF PIRSF006621 2 326 7.9E-108 T 11-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMK58_17610 2138d11fddc77477d14cb4f17362a70b 328 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 96 114 - T 11-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMK58_17610 2138d11fddc77477d14cb4f17362a70b 328 SUPERFAMILY SSF51395 13 319 1.28E-93 T 11-10-2018 AMK58_17610 2138d11fddc77477d14cb4f17362a70b 328 Pfam PF01207 Dihydrouridine synthase (Dus) 15 316 9.5E-119 T 11-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMK58_17610 2138d11fddc77477d14cb4f17362a70b 328 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 5 320 2.8E-121 T 11-10-2018 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 AMK58_17610 2138d11fddc77477d14cb4f17362a70b 328 Gene3D G3DSA:1.10.1200.80 254 324 1.3E-9 T 11-10-2018 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 AMK58_02380 31a1eea38231590cb5e221d379305cc7 354 SUPERFAMILY SSF52172 4 110 1.41E-28 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_02380 31a1eea38231590cb5e221d379305cc7 354 SMART SM00448 5 120 3.9E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_02380 31a1eea38231590cb5e221d379305cc7 354 Gene3D G3DSA:3.40.50.2300 2 137 5.7E-31 T 11-10-2018 AMK58_02380 31a1eea38231590cb5e221d379305cc7 354 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 5 344 38.225 T 11-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AMK58_02380 31a1eea38231590cb5e221d379305cc7 354 Gene3D G3DSA:3.40.50.180 152 348 1.0E-68 T 11-10-2018 IPR035909 Methylesterase CheB, C-terminal AMK58_02380 31a1eea38231590cb5e221d379305cc7 354 SUPERFAMILY SSF52738 157 343 2.22E-65 T 11-10-2018 IPR035909 Methylesterase CheB, C-terminal AMK58_02380 31a1eea38231590cb5e221d379305cc7 354 PIRSF PIRSF000876 2 348 9.8E-129 T 11-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AMK58_02380 31a1eea38231590cb5e221d379305cc7 354 Pfam PF00072 Response regulator receiver domain 7 109 9.0E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_02380 31a1eea38231590cb5e221d379305cc7 354 Pfam PF01339 CheB methylesterase 161 338 1.4E-55 T 11-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AMK58_00140 e7169f4737c6c08c914b2fe10772e8bf 225 Gene3D G3DSA:1.10.10.60 20 87 3.9E-29 T 11-10-2018 AMK58_00140 e7169f4737c6c08c914b2fe10772e8bf 225 SUPERFAMILY SSF48498 100 215 2.19E-23 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMK58_00140 e7169f4737c6c08c914b2fe10772e8bf 225 SUPERFAMILY SSF46689 21 92 8.48E-17 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_00140 e7169f4737c6c08c914b2fe10772e8bf 225 Pfam PF00440 Bacterial regulatory proteins, tetR family 35 79 6.4E-13 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_00140 e7169f4737c6c08c914b2fe10772e8bf 225 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 55 78 8.0E-5 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_00140 e7169f4737c6c08c914b2fe10772e8bf 225 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 47 8.0E-5 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_00140 e7169f4737c6c08c914b2fe10772e8bf 225 Gene3D G3DSA:1.10.357.10 93 221 9.2E-30 T 11-10-2018 AMK58_00140 e7169f4737c6c08c914b2fe10772e8bf 225 ProSitePatterns PS01081 TetR-type HTH domain signature. 46 76 - T 11-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMK58_18175 9d07911910aa84c37701bd3927f73932 78 Gene3D G3DSA:1.10.1220.10 9 58 4.6E-6 T 11-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AMK58_18175 9d07911910aa84c37701bd3927f73932 78 Pfam PF03869 Arc-like DNA binding domain 5 42 3.3E-5 T 11-10-2018 IPR005569 Arc-like DNA binding domain GO:0003677 AMK58_18175 9d07911910aa84c37701bd3927f73932 78 SUPERFAMILY SSF47598 3 56 7.78E-9 T 11-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 AMK58_08775 d9de585d19f4da18933748c07654a723 345 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 175 338 7.1E-50 T 11-10-2018 IPR000160 GGDEF domain AMK58_08775 d9de585d19f4da18933748c07654a723 345 SUPERFAMILY SSF55073 182 338 2.2E-46 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_08775 d9de585d19f4da18933748c07654a723 345 Pfam PF00990 Diguanylate cyclase, GGDEF domain 177 336 5.1E-45 T 11-10-2018 IPR000160 GGDEF domain AMK58_08775 d9de585d19f4da18933748c07654a723 345 Gene3D G3DSA:3.30.70.270 165 340 1.2E-54 T 11-10-2018 AMK58_08775 d9de585d19f4da18933748c07654a723 345 SMART SM00267 166 340 4.3E-60 T 11-10-2018 IPR000160 GGDEF domain AMK58_18765 8894078845f93350fa5c44cadecf3c35 370 TIGRFAM TIGR03363 VI_chp_8: type VI secretion-associated protein, ImpA family 12 362 2.4E-93 T 11-10-2018 IPR017740 Type VI secretion system-associated, ImpA AMK58_18765 8894078845f93350fa5c44cadecf3c35 370 Pfam PF06812 ImpA, N-terminal, type VI secretion system 18 139 3.1E-37 T 11-10-2018 IPR010657 ImpA, N-terminal AMK58_18260 b4c198570ea2e06f1a4192125e503502 429 Gene3D G3DSA:1.25.40.10 127 234 1.7E-13 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_18260 b4c198570ea2e06f1a4192125e503502 429 Pfam PF13424 Tetratricopeptide repeat 66 127 7.1E-9 T 11-10-2018 AMK58_18260 b4c198570ea2e06f1a4192125e503502 429 Pfam PF13432 Tetratricopeptide repeat 139 205 6.0E-4 T 11-10-2018 AMK58_18260 b4c198570ea2e06f1a4192125e503502 429 SMART SM00028 134 167 0.006 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18260 b4c198570ea2e06f1a4192125e503502 429 SMART SM00028 66 99 4.9E-4 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18260 b4c198570ea2e06f1a4192125e503502 429 SMART SM00028 32 65 28.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18260 b4c198570ea2e06f1a4192125e503502 429 SMART SM00028 100 133 0.1 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18260 b4c198570ea2e06f1a4192125e503502 429 Gene3D G3DSA:3.40.50.150 250 412 2.5E-27 T 11-10-2018 AMK58_18260 b4c198570ea2e06f1a4192125e503502 429 SUPERFAMILY SSF53335 227 413 8.52E-30 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_18260 b4c198570ea2e06f1a4192125e503502 429 Pfam PF13489 Methyltransferase domain 255 367 4.2E-13 T 11-10-2018 AMK58_18260 b4c198570ea2e06f1a4192125e503502 429 SUPERFAMILY SSF48452 39 225 5.87E-28 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_18260 b4c198570ea2e06f1a4192125e503502 429 Gene3D G3DSA:1.25.40.10 34 126 1.4E-21 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_22385 34790fd089852d27f612d055c79a9b67 241 Gene3D G3DSA:3.40.50.300 1 239 1.7E-67 T 11-10-2018 AMK58_22385 34790fd089852d27f612d055c79a9b67 241 SMART SM00382 25 208 4.3E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_22385 34790fd089852d27f612d055c79a9b67 241 SUPERFAMILY SSF52540 1 221 1.25E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_22385 34790fd089852d27f612d055c79a9b67 241 Pfam PF00005 ABC transporter 16 159 3.2E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_22385 34790fd089852d27f612d055c79a9b67 241 ProSitePatterns PS00211 ABC transporters family signature. 132 146 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_22385 34790fd089852d27f612d055c79a9b67 241 TIGRFAM TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system 1 235 2.6E-104 T 11-10-2018 IPR022467 ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system AMK58_06045 2805a07921d0bd531e8f5a9ec7153c54 112 PIRSF PIRSF039144 1 112 3.9E-56 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMK58_06045 2805a07921d0bd531e8f5a9ec7153c54 112 SMART SM00938 4 105 1.3E-67 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMK58_06045 2805a07921d0bd531e8f5a9ec7153c54 112 PRINTS PR00340 P-II protein signature 83 103 1.7E-45 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMK58_06045 2805a07921d0bd531e8f5a9ec7153c54 112 PRINTS PR00340 P-II protein signature 2 17 1.7E-45 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMK58_06045 2805a07921d0bd531e8f5a9ec7153c54 112 PRINTS PR00340 P-II protein signature 23 41 1.7E-45 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMK58_06045 2805a07921d0bd531e8f5a9ec7153c54 112 PRINTS PR00340 P-II protein signature 52 75 1.7E-45 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMK58_06045 2805a07921d0bd531e8f5a9ec7153c54 112 SUPERFAMILY SSF54913 1 112 1.11E-46 T 11-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta AMK58_06045 2805a07921d0bd531e8f5a9ec7153c54 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 11-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 AMK58_06045 2805a07921d0bd531e8f5a9ec7153c54 112 Gene3D G3DSA:3.30.70.120 1 112 1.4E-48 T 11-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal AMK58_06045 2805a07921d0bd531e8f5a9ec7153c54 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 11-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 AMK58_06045 2805a07921d0bd531e8f5a9ec7153c54 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 1.1E-43 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMK58_16255 cba1850a0ce43dfa9797f657e785bd3f 176 SUPERFAMILY SSF46626 57 154 7.93E-18 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_16255 cba1850a0ce43dfa9797f657e785bd3f 176 Gene3D G3DSA:1.10.760.10 57 163 6.5E-15 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_16255 cba1850a0ce43dfa9797f657e785bd3f 176 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 70 150 2.0E-12 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_19325 e70d5d0dd37e55e473a75036d7cb79bc 348 Gene3D G3DSA:3.30.1330.10 18 166 3.2E-53 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMK58_19325 e70d5d0dd37e55e473a75036d7cb79bc 348 Gene3D G3DSA:3.90.650.10 167 348 1.7E-57 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMK58_19325 e70d5d0dd37e55e473a75036d7cb79bc 348 SUPERFAMILY SSF56042 171 344 2.54E-47 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMK58_19325 e70d5d0dd37e55e473a75036d7cb79bc 348 Pfam PF02769 AIR synthase related protein, C-terminal domain 174 324 1.4E-28 T 11-10-2018 IPR010918 PurM-like, C-terminal domain AMK58_19325 e70d5d0dd37e55e473a75036d7cb79bc 348 Pfam PF00586 AIR synthase related protein, N-terminal domain 53 162 1.9E-16 T 11-10-2018 IPR016188 PurM-like, N-terminal domain AMK58_19325 e70d5d0dd37e55e473a75036d7cb79bc 348 TIGRFAM TIGR02124 hypE: hydrogenase expression/formation protein HypE 18 348 2.4E-142 T 11-10-2018 IPR011854 Carbamoyl dehydratase HypE AMK58_19325 e70d5d0dd37e55e473a75036d7cb79bc 348 PIRSF PIRSF005644 14 348 2.6E-128 T 11-10-2018 IPR011854 Carbamoyl dehydratase HypE AMK58_19325 e70d5d0dd37e55e473a75036d7cb79bc 348 SUPERFAMILY SSF55326 19 165 6.11E-34 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMK58_17065 a80fecb191b0236653d5d8a66479b8d9 76 Pfam PF11390 NADH-dependant formate dehydrogenase delta subunit FdsD 7 65 4.1E-27 T 11-10-2018 IPR021074 Formate dehydrogenase, delta subunit AMK58_00580 a39dd28b8654dd7b2accd151f7748642 262 Gene3D G3DSA:1.10.3470.10 29 259 1.3E-5 T 11-10-2018 IPR037294 ABC transporter, BtuC-like AMK58_00580 a39dd28b8654dd7b2accd151f7748642 262 SUPERFAMILY SSF81345 3 255 2.09E-38 T 11-10-2018 IPR037294 ABC transporter, BtuC-like AMK58_00580 a39dd28b8654dd7b2accd151f7748642 262 Pfam PF00950 ABC 3 transport family 1 257 1.0E-74 T 11-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 AMK58_14970 bff867a49327e538d13dbd27a094fd3f 295 Pfam PF02653 Branched-chain amino acid transport system / permease component 17 283 1.8E-37 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_05330 101249ffc807aa3b76a7c904528c8f5a 556 Gene3D G3DSA:1.25.40.10 170 281 5.0E-10 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_05330 101249ffc807aa3b76a7c904528c8f5a 556 Gene3D G3DSA:1.25.40.10 2 169 2.7E-22 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_05330 101249ffc807aa3b76a7c904528c8f5a 556 SUPERFAMILY SSF53756 294 529 6.28E-18 T 11-10-2018 AMK58_05330 101249ffc807aa3b76a7c904528c8f5a 556 Pfam PF13432 Tetratricopeptide repeat 83 139 0.0025 T 11-10-2018 AMK58_05330 101249ffc807aa3b76a7c904528c8f5a 556 Pfam PF13432 Tetratricopeptide repeat 9 72 3.9E-7 T 11-10-2018 AMK58_05330 101249ffc807aa3b76a7c904528c8f5a 556 SUPERFAMILY SSF48452 11 269 7.39E-24 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_05330 101249ffc807aa3b76a7c904528c8f5a 556 SMART SM00028 4 37 33.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_05330 101249ffc807aa3b76a7c904528c8f5a 556 SMART SM00028 207 240 65.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_05330 101249ffc807aa3b76a7c904528c8f5a 556 SMART SM00028 106 139 13.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_05330 101249ffc807aa3b76a7c904528c8f5a 556 SMART SM00028 173 206 73.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_05330 101249ffc807aa3b76a7c904528c8f5a 556 SMART SM00028 38 71 68.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_05460 5445d0ab41f60b8c993c14f938e0faec 602 Pfam PF00999 Sodium/hydrogen exchanger family 7 375 1.4E-57 T 11-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AMK58_05460 5445d0ab41f60b8c993c14f938e0faec 602 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 11 284 5.0E-80 T 11-10-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 AMK58_05460 5445d0ab41f60b8c993c14f938e0faec 602 Gene3D G3DSA:3.40.50.720 403 564 4.8E-36 T 11-10-2018 AMK58_05460 5445d0ab41f60b8c993c14f938e0faec 602 Gene3D G3DSA:1.20.1530.20 3 383 2.0E-75 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily AMK58_05460 5445d0ab41f60b8c993c14f938e0faec 602 Pfam PF02254 TrkA-N domain 405 518 4.7E-21 T 11-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 AMK58_05460 5445d0ab41f60b8c993c14f938e0faec 602 SUPERFAMILY SSF51735 405 533 6.13E-31 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_23250 99dd015446f5ad08533b7bacaeeb59c2 260 SUPERFAMILY SSF52096 2 259 1.61E-75 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMK58_23250 99dd015446f5ad08533b7bacaeeb59c2 260 Gene3D G3DSA:3.90.226.10 1 201 2.0E-63 T 11-10-2018 AMK58_23250 99dd015446f5ad08533b7bacaeeb59c2 260 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 259 1.1E-52 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMK58_23250 99dd015446f5ad08533b7bacaeeb59c2 260 Gene3D G3DSA:1.10.12.10 203 260 1.8E-21 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal AMK58_27640 f7ac7f6cc9c03716675fc71a10a4bb78 507 Pfam PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus 109 505 3.9E-163 T 11-10-2018 IPR007392 D-galactarate/Altronate dehydratase, C-terminal GO:0016829 AMK58_27640 f7ac7f6cc9c03716675fc71a10a4bb78 507 Gene3D G3DSA:3.90.1210.30 5 82 9.4E-24 T 11-10-2018 AMK58_27640 f7ac7f6cc9c03716675fc71a10a4bb78 507 Pfam PF08666 SAF domain 12 80 1.3E-12 T 11-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 AMK58_27640 f7ac7f6cc9c03716675fc71a10a4bb78 507 SMART SM00858 12 81 1.6E-13 T 11-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 AMK58_19030 a8c21558f3d3c0b6b92f56bef8555b69 309 Pfam PF03547 Membrane transport protein 164 303 1.8E-9 T 11-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 AMK58_13755 127f33bd0bf98ee2e0f8a272702be820 346 SUPERFAMILY SSF55781 75 345 6.47E-55 T 11-10-2018 AMK58_13755 127f33bd0bf98ee2e0f8a272702be820 346 Gene3D G3DSA:3.30.450.40 109 343 5.0E-35 T 11-10-2018 IPR029016 GAF-like domain superfamily AMK58_13755 127f33bd0bf98ee2e0f8a272702be820 346 PIRSF PIRSF005485 2 346 5.4E-109 T 11-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 AMK58_13755 127f33bd0bf98ee2e0f8a272702be820 346 SUPERFAMILY SSF46785 4 85 3.53E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_13755 127f33bd0bf98ee2e0f8a272702be820 346 Hamap MF_00081 Heat-inducible transcription repressor HrcA [hrcA]. 4 338 28.686 T 11-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 AMK58_13755 127f33bd0bf98ee2e0f8a272702be820 346 Gene3D G3DSA:3.30.390.60 131 234 5.0E-35 T 11-10-2018 IPR023120 Winged helix-turn-helix transcription repressor, HrcA, inserted dimerising domain superfamily AMK58_13755 127f33bd0bf98ee2e0f8a272702be820 346 Pfam PF01628 HrcA protein C terminal domain 107 331 9.4E-57 T 11-10-2018 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal GO:0003677|GO:0006355 AMK58_13755 127f33bd0bf98ee2e0f8a272702be820 346 Gene3D G3DSA:1.10.10.10 1 87 6.2E-32 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_13755 127f33bd0bf98ee2e0f8a272702be820 346 TIGRFAM TIGR00331 hrcA: heat-inducible transcription repressor HrcA 7 344 8.5E-97 T 11-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 AMK58_02870 b884e21e0ed3b0f74636049ef85611e6 122 Gene3D G3DSA:2.170.150.40 5 117 8.6E-38 T 11-10-2018 AMK58_02870 b884e21e0ed3b0f74636049ef85611e6 122 Pfam PF04248 Domain of unknown function (DUF427) 19 111 4.2E-32 T 11-10-2018 IPR007361 Domain of unknown function DUF427 AMK58_00470 1a0f03f49c172219e0dc48cbefcb05ce 401 SUPERFAMILY SSF50685 36 399 8.37E-130 T 11-10-2018 IPR036908 RlpA-like domain superfamily AMK58_00470 1a0f03f49c172219e0dc48cbefcb05ce 401 Gene3D G3DSA:2.40.40.10 48 395 2.4E-139 T 11-10-2018 IPR036908 RlpA-like domain superfamily AMK58_00470 1a0f03f49c172219e0dc48cbefcb05ce 401 Gene3D G3DSA:2.40.240.50 141 304 2.4E-139 T 11-10-2018 AMK58_00470 1a0f03f49c172219e0dc48cbefcb05ce 401 Pfam PF06725 3D domain 318 392 8.5E-21 T 11-10-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 AMK58_00470 1a0f03f49c172219e0dc48cbefcb05ce 401 PIRSF PIRSF019422 1 401 6.5E-142 T 11-10-2018 IPR026044 Membrane-bound lytic murein transglycosylase A AMK58_00470 1a0f03f49c172219e0dc48cbefcb05ce 401 Pfam PF03562 MltA specific insert domain 54 299 8.4E-85 T 11-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 AMK58_00470 1a0f03f49c172219e0dc48cbefcb05ce 401 SMART SM00925 142 299 1.0E-88 T 11-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 AMK58_13010 c6a91276864b0bc2e960dce4cdc782c6 535 PIRSF PIRSF002741 7 534 9.5E-87 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMK58_13010 c6a91276864b0bc2e960dce4cdc782c6 535 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 85 107 - T 11-10-2018 IPR023765 Solute-binding protein family 5, conserved site AMK58_13010 c6a91276864b0bc2e960dce4cdc782c6 535 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 79 446 3.6E-89 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain AMK58_13010 c6a91276864b0bc2e960dce4cdc782c6 535 Gene3D G3DSA:3.40.190.10 213 522 1.5E-123 T 11-10-2018 AMK58_13010 c6a91276864b0bc2e960dce4cdc782c6 535 SUPERFAMILY SSF53850 32 533 1.07E-121 T 11-10-2018 AMK58_13010 c6a91276864b0bc2e960dce4cdc782c6 535 Gene3D G3DSA:3.10.105.10 292 510 1.5E-123 T 11-10-2018 AMK58_13010 c6a91276864b0bc2e960dce4cdc782c6 535 Gene3D G3DSA:3.90.76.10 49 212 1.5E-123 T 11-10-2018 AMK58_16820 efff41eedf0c7f7887afaa7f34041592 360 Pfam PF08402 TOBE domain 272 354 1.5E-5 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMK58_16820 efff41eedf0c7f7887afaa7f34041592 360 Gene3D G3DSA:3.40.50.300 5 225 3.9E-63 T 11-10-2018 AMK58_16820 efff41eedf0c7f7887afaa7f34041592 360 SUPERFAMILY SSF52540 6 245 3.8E-79 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_16820 efff41eedf0c7f7887afaa7f34041592 360 SUPERFAMILY SSF50331 240 356 8.84E-10 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMK58_16820 efff41eedf0c7f7887afaa7f34041592 360 SMART SM00382 30 223 5.2E-19 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_16820 efff41eedf0c7f7887afaa7f34041592 360 Pfam PF00005 ABC transporter 22 165 2.6E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_16820 efff41eedf0c7f7887afaa7f34041592 360 Gene3D G3DSA:2.40.50.140 279 346 9.9E-6 T 11-10-2018 AMK58_16820 efff41eedf0c7f7887afaa7f34041592 360 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_16820 efff41eedf0c7f7887afaa7f34041592 360 Gene3D G3DSA:2.40.50.940 226 354 9.9E-6 T 11-10-2018 AMK58_04725 b525bf93be9a81dc5af3e2c018358cba 98 Pfam PF04319 NifZ domain 18 88 3.6E-29 T 11-10-2018 IPR007415 Nitrogenase MoFe maturation protein, NifZ GO:0009399 AMK58_27855 92db6c0f2e583a48ac1d425964cbf28c 293 SUPERFAMILY SSF46785 1 82 5.01E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_27855 92db6c0f2e583a48ac1d425964cbf28c 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 61 2.7E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_27855 92db6c0f2e583a48ac1d425964cbf28c 293 SUPERFAMILY SSF53850 89 269 5.07E-17 T 11-10-2018 AMK58_27855 92db6c0f2e583a48ac1d425964cbf28c 293 Pfam PF03466 LysR substrate binding domain 89 261 1.5E-12 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_27855 92db6c0f2e583a48ac1d425964cbf28c 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.4E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_27855 92db6c0f2e583a48ac1d425964cbf28c 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.4E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_27855 92db6c0f2e583a48ac1d425964cbf28c 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.4E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_27855 92db6c0f2e583a48ac1d425964cbf28c 293 Gene3D G3DSA:3.40.190.10 86 175 1.1E-11 T 11-10-2018 AMK58_27855 92db6c0f2e583a48ac1d425964cbf28c 293 Gene3D G3DSA:1.10.10.10 1 85 9.8E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_08420 1c06a494148b733382b9fb4f1ba5dcef 157 Gene3D G3DSA:3.30.300.20 2 152 7.7E-53 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta AMK58_08420 1c06a494148b733382b9fb4f1ba5dcef 157 Pfam PF02566 OsmC-like protein 52 151 3.5E-15 T 11-10-2018 IPR003718 OsmC/Ohr family AMK58_08420 1c06a494148b733382b9fb4f1ba5dcef 157 SUPERFAMILY SSF82784 5 151 1.7E-45 T 11-10-2018 IPR036102 OsmC/Ohr superfamily AMK58_21570 d811014896bf045ea9abb7d193c5598a 359 Pfam PF00072 Response regulator receiver domain 1 104 6.5E-19 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_21570 d811014896bf045ea9abb7d193c5598a 359 Gene3D G3DSA:3.40.50.12740 1 145 2.8E-23 T 11-10-2018 AMK58_21570 d811014896bf045ea9abb7d193c5598a 359 SMART SM00448 1 113 4.0E-11 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_21570 d811014896bf045ea9abb7d193c5598a 359 SUPERFAMILY SSF52172 1 105 7.97E-23 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_21570 d811014896bf045ea9abb7d193c5598a 359 Gene3D G3DSA:3.40.50.180 164 357 5.2E-58 T 11-10-2018 IPR035909 Methylesterase CheB, C-terminal AMK58_21570 d811014896bf045ea9abb7d193c5598a 359 SUPERFAMILY SSF52738 170 353 1.96E-55 T 11-10-2018 IPR035909 Methylesterase CheB, C-terminal AMK58_21570 d811014896bf045ea9abb7d193c5598a 359 PIRSF PIRSF000876 1 356 2.2E-94 T 11-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AMK58_21570 d811014896bf045ea9abb7d193c5598a 359 Pfam PF01339 CheB methylesterase 175 348 9.0E-51 T 11-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AMK58_05595 e56bdf0e41941d5655504fe8440b1d28 277 SUPERFAMILY SSF53167 4 267 1.95E-85 T 11-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 AMK58_05595 e56bdf0e41941d5655504fe8440b1d28 277 TIGRFAM TIGR01697 PNPH-PUNA-XAPA: inosine/guanosine/xanthosine phosphorylase family 20 265 5.3E-98 T 11-10-2018 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 AMK58_05595 e56bdf0e41941d5655504fe8440b1d28 277 Pfam PF01048 Phosphorylase superfamily 20 266 6.6E-49 T 11-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AMK58_05595 e56bdf0e41941d5655504fe8440b1d28 277 Gene3D G3DSA:3.40.50.1580 1 269 2.1E-102 T 11-10-2018 AMK58_05595 e56bdf0e41941d5655504fe8440b1d28 277 PIRSF PIRSF000477 1 269 3.3E-102 T 11-10-2018 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 AMK58_05595 e56bdf0e41941d5655504fe8440b1d28 277 TIGRFAM TIGR01700 PNPH: purine nucleoside phosphorylase I, inosine and guanosine-specific 21 263 1.3E-88 T 11-10-2018 IPR011270 Purine nucleoside phosphorylase I, inosine/guanosine-specific GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 AMK58_00540 e199f0b97da5c78b7278af2d2c4216d3 134 Gene3D G3DSA:1.10.260.40 2 79 2.2E-13 T 11-10-2018 AMK58_00540 e199f0b97da5c78b7278af2d2c4216d3 134 SMART SM00530 7 63 4.0E-8 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMK58_00540 e199f0b97da5c78b7278af2d2c4216d3 134 SUPERFAMILY SSF47413 2 58 1.24E-11 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMK58_00540 e199f0b97da5c78b7278af2d2c4216d3 134 Pfam PF12844 Helix-turn-helix domain 5 58 8.8E-14 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMK58_02120 01b28c30410c5b5076acf6dcdd87baa2 436 SUPERFAMILY SSF103473 23 422 7.06E-42 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_02120 01b28c30410c5b5076acf6dcdd87baa2 436 Gene3D G3DSA:1.20.1250.20 10 214 1.4E-11 T 11-10-2018 AMK58_02120 01b28c30410c5b5076acf6dcdd87baa2 436 Gene3D G3DSA:1.20.1250.20 236 423 7.7E-17 T 11-10-2018 AMK58_02120 01b28c30410c5b5076acf6dcdd87baa2 436 Pfam PF11700 Vacuole effluxer Atg22 like 46 139 8.6E-7 T 11-10-2018 IPR024671 Autophagy-related protein 22-like AMK58_02120 01b28c30410c5b5076acf6dcdd87baa2 436 Pfam PF11700 Vacuole effluxer Atg22 like 146 419 1.7E-36 T 11-10-2018 IPR024671 Autophagy-related protein 22-like AMK58_17835 66fe5449520f519516d4d79fc3486d6f 256 SUPERFAMILY SSF51306 37 254 2.04E-63 T 11-10-2018 IPR036286 LexA/Signal peptidase-like superfamily AMK58_17835 66fe5449520f519516d4d79fc3486d6f 256 ProSitePatterns PS00761 Signal peptidases I signature 3. 192 205 - T 11-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 AMK58_17835 66fe5449520f519516d4d79fc3486d6f 256 ProSitePatterns PS00501 Signal peptidases I serine active site. 48 55 - T 11-10-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 AMK58_17835 66fe5449520f519516d4d79fc3486d6f 256 Gene3D G3DSA:2.170.230.10 120 186 1.9E-59 T 11-10-2018 AMK58_17835 66fe5449520f519516d4d79fc3486d6f 256 ProSitePatterns PS00760 Signal peptidases I lysine active site. 111 123 - T 11-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 AMK58_17835 66fe5449520f519516d4d79fc3486d6f 256 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 23 230 9.7E-49 T 11-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMK58_17835 66fe5449520f519516d4d79fc3486d6f 256 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 187 206 4.1E-24 T 11-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMK58_17835 66fe5449520f519516d4d79fc3486d6f 256 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 109 121 4.1E-24 T 11-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMK58_17835 66fe5449520f519516d4d79fc3486d6f 256 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 39 55 4.1E-24 T 11-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMK58_17835 66fe5449520f519516d4d79fc3486d6f 256 Pfam PF00717 Peptidase S24-like 46 132 1.3E-20 T 11-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AMK58_17835 66fe5449520f519516d4d79fc3486d6f 256 Gene3D G3DSA:2.10.109.10 37 229 1.9E-59 T 11-10-2018 AMK58_20230 68ccf733a5a9937469f9ede3a67a23ae 274 PIRSF PIRSF000097 1 267 2.2E-65 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMK58_20230 68ccf733a5a9937469f9ede3a67a23ae 274 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 120 137 - T 11-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AMK58_20230 68ccf733a5a9937469f9ede3a67a23ae 274 Gene3D G3DSA:3.20.20.100 1 274 5.1E-108 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMK58_20230 68ccf733a5a9937469f9ede3a67a23ae 274 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 37 54 - T 11-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AMK58_20230 68ccf733a5a9937469f9ede3a67a23ae 274 SUPERFAMILY SSF51430 4 260 7.86E-85 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMK58_20230 68ccf733a5a9937469f9ede3a67a23ae 274 Pfam PF00248 Aldo/keto reductase family 14 256 4.4E-52 T 11-10-2018 IPR023210 NADP-dependent oxidoreductase domain AMK58_20230 68ccf733a5a9937469f9ede3a67a23ae 274 PRINTS PR00069 Aldo-keto reductase signature 191 215 9.1E-45 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMK58_20230 68ccf733a5a9937469f9ede3a67a23ae 274 PRINTS PR00069 Aldo-keto reductase signature 120 137 9.1E-45 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMK58_20230 68ccf733a5a9937469f9ede3a67a23ae 274 PRINTS PR00069 Aldo-keto reductase signature 154 183 9.1E-45 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMK58_20230 68ccf733a5a9937469f9ede3a67a23ae 274 PRINTS PR00069 Aldo-keto reductase signature 89 107 9.1E-45 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMK58_20230 68ccf733a5a9937469f9ede3a67a23ae 274 PRINTS PR00069 Aldo-keto reductase signature 33 57 9.1E-45 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMK58_06855 dc877244e62949754bbff9a2538c3968 433 Pfam PF07690 Major Facilitator Superfamily 25 274 2.1E-23 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMK58_06855 dc877244e62949754bbff9a2538c3968 433 SUPERFAMILY SSF103473 12 418 1.7E-52 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_06855 dc877244e62949754bbff9a2538c3968 433 Gene3D G3DSA:1.20.1250.20 11 419 4.6E-46 T 11-10-2018 AMK58_06855 dc877244e62949754bbff9a2538c3968 433 TIGRFAM TIGR04259 oxa_formateAnti: oxalate/formate antiporter 16 419 3.4E-200 T 11-10-2018 IPR026355 Oxalate/formate antiporter GO:0016021|GO:0019531|GO:0019532 AMK58_22740 eefb945175d50ba74a170b07a0873f1a 321 PIRSF PIRSF017082 2 321 6.2E-109 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 AMK58_22740 eefb945175d50ba74a170b07a0873f1a 321 Gene3D G3DSA:3.40.190.150 30 311 2.2E-94 T 11-10-2018 AMK58_22740 eefb945175d50ba74a170b07a0873f1a 321 SUPERFAMILY SSF53850 40 277 2.06E-10 T 11-10-2018 AMK58_22740 eefb945175d50ba74a170b07a0873f1a 321 Gene3D G3DSA:3.40.190.10 125 247 2.2E-94 T 11-10-2018 AMK58_22740 eefb945175d50ba74a170b07a0873f1a 321 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 49 318 1.1E-63 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 AMK58_11395 e6fa753cff3a86ae95c2428f2a3e8e03 431 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 1 429 6.0E-151 T 11-10-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMK58_11395 e6fa753cff3a86ae95c2428f2a3e8e03 431 Gene3D G3DSA:1.10.40.30 349 428 7.2E-28 T 11-10-2018 AMK58_11395 e6fa753cff3a86ae95c2428f2a3e8e03 431 Gene3D G3DSA:1.20.200.10 93 347 2.1E-90 T 11-10-2018 AMK58_11395 e6fa753cff3a86ae95c2428f2a3e8e03 431 SUPERFAMILY SSF48557 3 429 4.87E-133 T 11-10-2018 IPR008948 L-Aspartase-like GO:0003824 AMK58_11395 e6fa753cff3a86ae95c2428f2a3e8e03 431 ProSitePatterns PS00163 Fumarate lyases signature. 261 270 - T 11-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 AMK58_11395 e6fa753cff3a86ae95c2428f2a3e8e03 431 Pfam PF00206 Lyase 7 284 3.4E-54 T 11-10-2018 IPR022761 Fumarate lyase, N-terminal AMK58_11395 e6fa753cff3a86ae95c2428f2a3e8e03 431 Gene3D G3DSA:1.10.275.10 1 92 7.1E-35 T 11-10-2018 IPR024083 Fumarase/histidase, N-terminal AMK58_11395 e6fa753cff3a86ae95c2428f2a3e8e03 431 PRINTS PR00145 Argininosuccinate lyase family signature 216 240 5.5E-5 T 11-10-2018 AMK58_11395 e6fa753cff3a86ae95c2428f2a3e8e03 431 PRINTS PR00145 Argininosuccinate lyase family signature 261 277 5.5E-5 T 11-10-2018 AMK58_11395 e6fa753cff3a86ae95c2428f2a3e8e03 431 PRINTS PR00145 Argininosuccinate lyase family signature 128 148 5.5E-5 T 11-10-2018 AMK58_11395 e6fa753cff3a86ae95c2428f2a3e8e03 431 SMART SM00998 349 429 6.3E-37 T 11-10-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMK58_11395 e6fa753cff3a86ae95c2428f2a3e8e03 431 PRINTS PR00149 Fumarate lyase superfamily signature 261 277 3.6E-24 T 11-10-2018 IPR000362 Fumarate lyase family AMK58_11395 e6fa753cff3a86ae95c2428f2a3e8e03 431 PRINTS PR00149 Fumarate lyase superfamily signature 88 106 3.6E-24 T 11-10-2018 IPR000362 Fumarate lyase family AMK58_11395 e6fa753cff3a86ae95c2428f2a3e8e03 431 PRINTS PR00149 Fumarate lyase superfamily signature 216 243 3.6E-24 T 11-10-2018 IPR000362 Fumarate lyase family AMK58_11395 e6fa753cff3a86ae95c2428f2a3e8e03 431 PRINTS PR00149 Fumarate lyase superfamily signature 133 151 3.6E-24 T 11-10-2018 IPR000362 Fumarate lyase family AMK58_11395 e6fa753cff3a86ae95c2428f2a3e8e03 431 Pfam PF10397 Adenylosuccinate lyase C-terminus 350 428 9.8E-25 T 11-10-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMK58_08410 860c1b568fd97c64da67cb2fe19c2d2a 583 Pfam PF01103 Surface antigen 273 583 1.6E-48 T 11-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 AMK58_08410 860c1b568fd97c64da67cb2fe19c2d2a 583 Gene3D G3DSA:3.10.20.310 158 249 9.3E-13 T 11-10-2018 AMK58_08410 860c1b568fd97c64da67cb2fe19c2d2a 583 Gene3D G3DSA:2.40.160.50 250 583 1.5E-68 T 11-10-2018 AMK58_08410 860c1b568fd97c64da67cb2fe19c2d2a 583 Pfam PF07244 Surface antigen variable number repeat 174 243 3.2E-5 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 AMK58_17575 f0d0c79149a05020bc0b864204504da6 287 Gene3D G3DSA:3.30.470.10 1 118 2.6E-31 T 11-10-2018 AMK58_17575 f0d0c79149a05020bc0b864204504da6 287 Gene3D G3DSA:3.20.10.10 121 286 1.1E-54 T 11-10-2018 AMK58_17575 f0d0c79149a05020bc0b864204504da6 287 Pfam PF01063 Amino-transferase class IV 31 256 5.4E-45 T 11-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 AMK58_17575 f0d0c79149a05020bc0b864204504da6 287 SUPERFAMILY SSF56752 3 282 5.89E-79 T 11-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 AMK58_24135 bb3bf913fe20319a7ed84a514a7882d3 633 SUPERFAMILY SSF48452 435 588 1.9E-22 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_24135 bb3bf913fe20319a7ed84a514a7882d3 633 Pfam PF13432 Tetratricopeptide repeat 466 517 8.1E-5 T 11-10-2018 AMK58_24135 bb3bf913fe20319a7ed84a514a7882d3 633 SMART SM00028 486 519 23.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_24135 bb3bf913fe20319a7ed84a514a7882d3 633 SMART SM00028 452 485 0.0011 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_24135 bb3bf913fe20319a7ed84a514a7882d3 633 SMART SM00028 554 587 3.1 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_24135 bb3bf913fe20319a7ed84a514a7882d3 633 Gene3D G3DSA:1.25.40.10 333 593 1.9E-30 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_12465 f0dc67a8e3c6a90ff9c2353749aa2218 180 SUPERFAMILY SSF161084 64 178 1.37E-11 T 11-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily AMK58_12465 f0dc67a8e3c6a90ff9c2353749aa2218 180 Pfam PF01124 MAPEG family 64 175 1.5E-9 T 11-10-2018 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein AMK58_12465 f0dc67a8e3c6a90ff9c2353749aa2218 180 Gene3D G3DSA:1.20.120.550 52 180 8.7E-13 T 11-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily AMK58_00985 abc419a9aa4ca5eaff33a0ffccbe7039 246 SUPERFAMILY SSF46626 21 227 3.13E-27 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_00985 abc419a9aa4ca5eaff33a0ffccbe7039 246 Pfam PF02433 Cytochrome C oxidase, mono-heme subunit/FixO 10 233 7.8E-98 T 11-10-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO AMK58_00985 abc419a9aa4ca5eaff33a0ffccbe7039 246 Gene3D G3DSA:1.10.760.10 47 208 1.6E-63 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_00985 abc419a9aa4ca5eaff33a0ffccbe7039 246 TIGRFAM TIGR00781 ccoO: cytochrome c oxidase, cbb3-type, subunit II 11 239 4.9E-107 T 11-10-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO AMK58_25325 6c31e2739d186979decf8ad4eb06366c 160 SUPERFAMILY SSF48695 37 155 5.59E-44 T 11-10-2018 IPR036280 Multiheme cytochrome superfamily AMK58_25325 6c31e2739d186979decf8ad4eb06366c 160 Gene3D G3DSA:1.10.1130.10 66 133 3.8E-29 T 11-10-2018 AMK58_25325 6c31e2739d186979decf8ad4eb06366c 160 Pfam PF03892 Nitrate reductase cytochrome c-type subunit (NapB) 37 147 1.2E-45 T 11-10-2018 IPR005591 Nitrate reductase cytochrome c-type subunit NapB AMK58_25325 6c31e2739d186979decf8ad4eb06366c 160 PIRSF PIRSF006105 2 160 2.7E-51 T 11-10-2018 IPR005591 Nitrate reductase cytochrome c-type subunit NapB AMK58_22065 084e5ee3eb9baee76f6ebcfeb65e8436 501 Gene3D G3DSA:2.160.20.10 184 430 3.0E-27 T 11-10-2018 IPR012334 Pectin lyase fold AMK58_22065 084e5ee3eb9baee76f6ebcfeb65e8436 501 SMART SM00710 292 313 2900.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_22065 084e5ee3eb9baee76f6ebcfeb65e8436 501 SMART SM00710 259 280 940.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_22065 084e5ee3eb9baee76f6ebcfeb65e8436 501 SMART SM00710 316 337 510.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_22065 084e5ee3eb9baee76f6ebcfeb65e8436 501 SMART SM00710 339 363 820.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_22065 084e5ee3eb9baee76f6ebcfeb65e8436 501 SMART SM00710 370 392 510.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_22065 084e5ee3eb9baee76f6ebcfeb65e8436 501 SMART SM00710 216 238 850.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat AMK58_22065 084e5ee3eb9baee76f6ebcfeb65e8436 501 Pfam PF13229 Right handed beta helix region 219 380 7.3E-17 T 11-10-2018 IPR039448 Right handed beta helix domain AMK58_22065 084e5ee3eb9baee76f6ebcfeb65e8436 501 TIGRFAM TIGR03804 para_beta_helix: parallel beta-helix repeat 321 353 4.0E-5 T 11-10-2018 IPR022441 Parallel beta-helix repeat-2 Reactome: R-HSA-8951664|Reactome: R-HSA-983168 AMK58_22065 084e5ee3eb9baee76f6ebcfeb65e8436 501 SUPERFAMILY SSF51126 26 444 3.64E-27 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor AMK58_21260 2aacf5f42f691758ce736f9f03300471 201 Pfam PF16917 Biotin/lipoate A/B protein ligase family 9 189 1.5E-57 T 11-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 AMK58_21260 2aacf5f42f691758ce736f9f03300471 201 Gene3D G3DSA:3.30.930.10 17 192 6.4E-41 T 11-10-2018 AMK58_21260 2aacf5f42f691758ce736f9f03300471 201 SUPERFAMILY SSF55681 56 192 7.46E-6 T 11-10-2018 AMK58_22295 bcd150b4e7c1d9d7a244839796b5b420 323 TIGRFAM TIGR04559 SoxH_rel_PQQ_2: quinoprotein relay system zinc metallohydrolase 2 41 323 2.1E-117 T 11-10-2018 IPR030829 Quinoprotein relay system zinc metallohydrolase 2 AMK58_22295 bcd150b4e7c1d9d7a244839796b5b420 323 Gene3D G3DSA:3.60.15.10 36 280 2.3E-41 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMK58_22295 bcd150b4e7c1d9d7a244839796b5b420 323 SMART SM00849 68 252 1.4E-18 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMK58_22295 bcd150b4e7c1d9d7a244839796b5b420 323 SUPERFAMILY SSF56281 20 307 2.1E-52 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMK58_22295 bcd150b4e7c1d9d7a244839796b5b420 323 Pfam PF00753 Metallo-beta-lactamase superfamily 67 252 4.9E-20 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMK58_22775 ae509f8ee2151ddd717300ab23b1f52f 135 SUPERFAMILY SSF52172 8 131 6.55E-39 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_22775 ae509f8ee2151ddd717300ab23b1f52f 135 Gene3D G3DSA:3.40.50.12740 14 134 7.8E-45 T 11-10-2018 AMK58_22775 ae509f8ee2151ddd717300ab23b1f52f 135 SMART SM00448 15 128 9.4E-39 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_22775 ae509f8ee2151ddd717300ab23b1f52f 135 Pfam PF00072 Response regulator receiver domain 17 128 2.4E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_10650 d8b8f3493c1f8e7754b4a340e8cc6406 76 Pfam PF11324 Protein of unknown function (DUF3126) 5 67 1.0E-27 T 11-10-2018 IPR021473 Protein of unknown function DUF3126 AMK58_12650 66f38b478ab9ff8efeb35b6fd96bddd8 300 PIRSF PIRSF006232 14 293 9.5E-85 T 11-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 AMK58_12650 66f38b478ab9ff8efeb35b6fd96bddd8 300 Gene3D G3DSA:2.60.120.10 28 281 4.8E-70 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_12650 66f38b478ab9ff8efeb35b6fd96bddd8 300 Gene3D G3DSA:2.60.120.10 156 255 4.8E-70 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_12650 66f38b478ab9ff8efeb35b6fd96bddd8 300 SUPERFAMILY SSF51182 17 297 2.68E-83 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily AMK58_12650 66f38b478ab9ff8efeb35b6fd96bddd8 300 Pfam PF02678 Pirin 29 134 9.5E-32 T 11-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 AMK58_12650 66f38b478ab9ff8efeb35b6fd96bddd8 300 Pfam PF05726 Pirin C-terminal cupin domain 187 286 3.7E-27 T 11-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 AMK58_08170 1ad6619dd7dbbbb0fdffbb737c546d97 348 Gene3D G3DSA:3.40.190.10 150 347 1.7E-22 T 11-10-2018 AMK58_08170 1ad6619dd7dbbbb0fdffbb737c546d97 348 Pfam PF13379 NMT1-like family 35 278 2.7E-29 T 11-10-2018 AMK58_08170 1ad6619dd7dbbbb0fdffbb737c546d97 348 SUPERFAMILY SSF53850 36 275 3.75E-31 T 11-10-2018 AMK58_08170 1ad6619dd7dbbbb0fdffbb737c546d97 348 Gene3D G3DSA:3.40.190.10 34 149 1.8E-20 T 11-10-2018 AMK58_27260 b07cbae2b8d1b966878045cbfd641390 143 Pfam PF01986 Domain of unknown function DUF123 43 128 1.9E-18 T 11-10-2018 IPR002837 Protein of unknown function DUF123 AMK58_04690 e5621c11ee736bf4d4c6163f69ae8d92 208 SUPERFAMILY SSF52218 1 204 5.8E-58 T 11-10-2018 IPR029039 Flavoprotein-like superfamily AMK58_04690 e5621c11ee736bf4d4c6163f69ae8d92 208 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 1 203 33.668 T 11-10-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 AMK58_04690 e5621c11ee736bf4d4c6163f69ae8d92 208 Pfam PF02525 Flavodoxin-like fold 1 201 1.4E-49 T 11-10-2018 IPR003680 Flavodoxin-like fold AMK58_04690 e5621c11ee736bf4d4c6163f69ae8d92 208 Gene3D G3DSA:3.40.50.360 1 204 1.5E-62 T 11-10-2018 IPR029039 Flavoprotein-like superfamily AMK58_08615 b49cfe587c41297aae0bb1d1aa22044c 150 Pfam PF03748 Flagellar basal body-associated protein FliL 56 149 2.6E-6 T 11-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 AMK58_05055 f5c6a0c22895cbf31f66bf5b4e9fac05 255 SUPERFAMILY SSF88874 28 168 3.01E-26 T 11-10-2018 AMK58_05055 f5c6a0c22895cbf31f66bf5b4e9fac05 255 Pfam PF07484 Phage Tail Collar Domain 33 88 5.8E-19 T 11-10-2018 IPR011083 Phage tail collar domain AMK58_05055 f5c6a0c22895cbf31f66bf5b4e9fac05 255 Gene3D G3DSA:4.10.1070.10 86 103 3.1E-14 T 11-10-2018 AMK58_05055 f5c6a0c22895cbf31f66bf5b4e9fac05 255 Gene3D G3DSA:3.90.1340.10 32 85 3.1E-14 T 11-10-2018 IPR037053 Phage tail collar domain superfamily AMK58_16265 c3b0df1cb0d6af3df3cc30ad32fa3ec7 447 Pfam PF03916 Polysulphide reductase, NrfD 68 388 4.7E-23 T 11-10-2018 IPR005614 NrfD family AMK58_22770 15f5818b01af81fd87d83d2ea56ca6f0 409 PRINTS PR00344 Bacterial sensor protein C-terminal signature 329 343 9.7E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_22770 15f5818b01af81fd87d83d2ea56ca6f0 409 PRINTS PR00344 Bacterial sensor protein C-terminal signature 347 357 9.7E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_22770 15f5818b01af81fd87d83d2ea56ca6f0 409 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 398 9.7E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_22770 15f5818b01af81fd87d83d2ea56ca6f0 409 PRINTS PR00344 Bacterial sensor protein C-terminal signature 360 378 9.7E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_22770 15f5818b01af81fd87d83d2ea56ca6f0 409 Gene3D G3DSA:3.40.50.2300 3 134 3.1E-37 T 11-10-2018 AMK58_22770 15f5818b01af81fd87d83d2ea56ca6f0 409 Pfam PF00072 Response regulator receiver domain 9 120 1.5E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_22770 15f5818b01af81fd87d83d2ea56ca6f0 409 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 293 399 4.6E-17 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_22770 15f5818b01af81fd87d83d2ea56ca6f0 409 SMART SM00387 288 401 2.7E-21 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_22770 15f5818b01af81fd87d83d2ea56ca6f0 409 SUPERFAMILY SSF55874 239 399 7.73E-31 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_22770 15f5818b01af81fd87d83d2ea56ca6f0 409 SUPERFAMILY SSF52172 5 140 1.71E-39 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_22770 15f5818b01af81fd87d83d2ea56ca6f0 409 Gene3D G3DSA:3.30.565.10 246 403 5.0E-32 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_22770 15f5818b01af81fd87d83d2ea56ca6f0 409 Gene3D G3DSA:1.10.287.130 138 241 1.0E-18 T 11-10-2018 AMK58_22770 15f5818b01af81fd87d83d2ea56ca6f0 409 SMART SM00448 7 120 5.5E-39 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_08315 b1611003a64efc39ff5848585f146f62 154 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 147 9.1E-54 T 11-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 AMK58_08315 b1611003a64efc39ff5848585f146f62 154 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 153 86.107 T 11-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 AMK58_08315 b1611003a64efc39ff5848585f146f62 154 Pfam PF03477 ATP cone domain 50 136 9.0E-16 T 11-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 AMK58_07280 fc3a5386a1f92900f6195ecbb9ac9657 214 Pfam PF00072 Response regulator receiver domain 3 108 1.7E-17 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_07280 fc3a5386a1f92900f6195ecbb9ac9657 214 SUPERFAMILY SSF52172 1 126 4.55E-23 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_07280 fc3a5386a1f92900f6195ecbb9ac9657 214 SUPERFAMILY SSF46894 142 209 2.21E-18 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMK58_07280 fc3a5386a1f92900f6195ecbb9ac9657 214 Gene3D G3DSA:3.40.50.12740 1 209 1.7E-45 T 11-10-2018 AMK58_07280 fc3a5386a1f92900f6195ecbb9ac9657 214 SMART SM00421 148 205 2.5E-21 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_07280 fc3a5386a1f92900f6195ecbb9ac9657 214 SMART SM00448 1 114 1.2E-14 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_07280 fc3a5386a1f92900f6195ecbb9ac9657 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 165 2.1E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_07280 fc3a5386a1f92900f6195ecbb9ac9657 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 193 2.1E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_07280 fc3a5386a1f92900f6195ecbb9ac9657 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 181 2.1E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_07280 fc3a5386a1f92900f6195ecbb9ac9657 214 Pfam PF00196 Bacterial regulatory proteins, luxR family 151 204 9.4E-15 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_04385 539bb842b6ee67bf16b3842f70c50920 247 Pfam PF00119 ATP synthase A chain 30 240 7.4E-58 T 11-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_04385 539bb842b6ee67bf16b3842f70c50920 247 SUPERFAMILY SSF81336 77 240 7.19E-46 T 11-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_04385 539bb842b6ee67bf16b3842f70c50920 247 Hamap MF_01393 ATP synthase subunit a [atpB]. 5 247 16.244 T 11-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_04385 539bb842b6ee67bf16b3842f70c50920 247 PRINTS PR00123 ATP synthase A subunit signature 85 101 1.5E-29 T 11-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_04385 539bb842b6ee67bf16b3842f70c50920 247 PRINTS PR00123 ATP synthase A subunit signature 166 188 1.5E-29 T 11-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_04385 539bb842b6ee67bf16b3842f70c50920 247 PRINTS PR00123 ATP synthase A subunit signature 146 161 1.5E-29 T 11-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_04385 539bb842b6ee67bf16b3842f70c50920 247 PRINTS PR00123 ATP synthase A subunit signature 227 242 1.5E-29 T 11-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_04385 539bb842b6ee67bf16b3842f70c50920 247 Gene3D G3DSA:1.20.120.220 77 247 1.2E-34 T 11-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_04385 539bb842b6ee67bf16b3842f70c50920 247 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 4 243 1.4E-67 T 11-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_04385 539bb842b6ee67bf16b3842f70c50920 247 ProSitePatterns PS00449 ATP synthase a subunit signature. 169 178 - T 11-10-2018 IPR023011 ATP synthase, F0 complex, subunit A, active site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_01315 9fe0cd479b502251df27a77007d452a2 423 SUPERFAMILY SSF53448 14 385 6.98E-77 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_01315 9fe0cd479b502251df27a77007d452a2 423 Gene3D G3DSA:3.90.550.10 5 295 3.3E-90 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_01315 9fe0cd479b502251df27a77007d452a2 423 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 107 115 - T 11-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 AMK58_01315 9fe0cd479b502251df27a77007d452a2 423 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 11 418 52.255 T 11-10-2018 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 AMK58_01315 9fe0cd479b502251df27a77007d452a2 423 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 15 392 9.1E-156 T 11-10-2018 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 AMK58_01315 9fe0cd479b502251df27a77007d452a2 423 Pfam PF00483 Nucleotidyl transferase 16 285 1.9E-67 T 11-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AMK58_01315 9fe0cd479b502251df27a77007d452a2 423 SUPERFAMILY SSF51161 305 409 2.72E-16 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily AMK58_01315 9fe0cd479b502251df27a77007d452a2 423 Gene3D G3DSA:2.160.10.10 296 423 2.3E-36 T 11-10-2018 AMK58_01315 9fe0cd479b502251df27a77007d452a2 423 ProSitePatterns PS00810 ADP-glucose pyrophosphorylase signature 3. 205 215 - T 11-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 AMK58_15530 c5cea39321376957f7ca7a5caac3ba2c 309 Pfam PF00348 Polyprenyl synthetase 47 275 3.4E-53 T 11-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 AMK58_15530 c5cea39321376957f7ca7a5caac3ba2c 309 Gene3D G3DSA:1.10.600.10 14 309 2.4E-98 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily AMK58_15530 c5cea39321376957f7ca7a5caac3ba2c 309 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 228 240 - T 11-10-2018 IPR033749 Polyprenyl synthetase, conserved site AMK58_15530 c5cea39321376957f7ca7a5caac3ba2c 309 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 96 112 - T 11-10-2018 IPR033749 Polyprenyl synthetase, conserved site AMK58_15530 c5cea39321376957f7ca7a5caac3ba2c 309 SUPERFAMILY SSF48576 20 301 1.67E-81 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily AMK58_15445 134c91893954222bfa84d612657cc0e6 321 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 41 174 6.8E-59 T 11-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 AMK58_15445 134c91893954222bfa84d612657cc0e6 321 SUPERFAMILY SSF52540 13 297 6.02E-39 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_15445 134c91893954222bfa84d612657cc0e6 321 Gene3D G3DSA:1.10.8.300 208 318 1.4E-27 T 11-10-2018 AMK58_15445 134c91893954222bfa84d612657cc0e6 321 Gene3D G3DSA:3.40.50.300 22 207 5.0E-42 T 11-10-2018 AMK58_15445 134c91893954222bfa84d612657cc0e6 321 PIRSF PIRSF002849 1 320 2.9E-114 T 11-10-2018 AMK58_10765 9b8fe12ee6ab9022dce3c701d9baef48 281 Pfam PF05257 CHAP domain 9 100 2.1E-6 T 11-10-2018 IPR007921 CHAP domain AMK58_10765 9b8fe12ee6ab9022dce3c701d9baef48 281 Gene3D G3DSA:3.90.1720.10 8 126 1.7E-10 T 11-10-2018 AMK58_10765 9b8fe12ee6ab9022dce3c701d9baef48 281 SUPERFAMILY SSF54001 37 150 2.45E-14 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily AMK58_29240 aa9c77e5b9f40e4e3863914a924ddd04 839 Gene3D G3DSA:3.90.550.10 1 220 2.5E-8 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_29240 aa9c77e5b9f40e4e3863914a924ddd04 839 SUPERFAMILY SSF53448 2 222 2.11E-9 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_03650 ef3109aa3ebe6bbbc08a2a006e439601 419 Pfam PF00072 Response regulator receiver domain 44 156 3.3E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_03650 ef3109aa3ebe6bbbc08a2a006e439601 419 SUPERFAMILY SSF52172 37 178 2.7E-37 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_03650 ef3109aa3ebe6bbbc08a2a006e439601 419 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 230 418 1.4E-37 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AMK58_03650 ef3109aa3ebe6bbbc08a2a006e439601 419 Gene3D G3DSA:3.60.40.10 167 419 1.9E-54 T 11-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AMK58_03650 ef3109aa3ebe6bbbc08a2a006e439601 419 SMART SM00448 42 156 2.0E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_03650 ef3109aa3ebe6bbbc08a2a006e439601 419 Gene3D G3DSA:3.40.50.2300 40 166 1.6E-30 T 11-10-2018 AMK58_03650 ef3109aa3ebe6bbbc08a2a006e439601 419 SMART SM00331 203 418 2.1E-24 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AMK58_00840 189089e3375bc14a9814019553b57cfe 190 Pfam PF05685 Putative restriction endonuclease 13 159 5.2E-23 T 11-10-2018 IPR008538 Domain of unknown function DUF820 AMK58_00840 189089e3375bc14a9814019553b57cfe 190 SUPERFAMILY SSF52980 7 158 1.02E-22 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AMK58_00840 189089e3375bc14a9814019553b57cfe 190 Gene3D G3DSA:3.90.1570.10 5 180 1.9E-16 T 11-10-2018 AMK58_10570 5e78c73db70d38aa8ebf5f9c477cb33c 466 Pfam PF07687 Peptidase dimerisation domain 206 364 4.3E-24 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain AMK58_10570 5e78c73db70d38aa8ebf5f9c477cb33c 466 Gene3D G3DSA:3.40.630.10 24 455 1.8E-149 T 11-10-2018 AMK58_10570 5e78c73db70d38aa8ebf5f9c477cb33c 466 Pfam PF01546 Peptidase family M20/M25/M40 90 461 5.9E-33 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 AMK58_10570 5e78c73db70d38aa8ebf5f9c477cb33c 466 Gene3D G3DSA:3.30.70.360 213 383 1.8E-149 T 11-10-2018 AMK58_10570 5e78c73db70d38aa8ebf5f9c477cb33c 466 SUPERFAMILY SSF53187 9 464 1.61E-61 T 11-10-2018 AMK58_18980 1fc7bd7a2b450e8b66c2c1171c36871a 482 Pfam PF09856 Predicted transcriptional regulator (DUF2083) 314 470 3.6E-72 T 11-10-2018 IPR018653 Domain of unknown function DUF2083,transcriptional regulator AMK58_18980 1fc7bd7a2b450e8b66c2c1171c36871a 482 SMART SM00530 9 64 8.6E-16 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMK58_18980 1fc7bd7a2b450e8b66c2c1171c36871a 482 SUPERFAMILY SSF47413 3 69 7.24E-17 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMK58_18980 1fc7bd7a2b450e8b66c2c1171c36871a 482 Pfam PF01381 Helix-turn-helix 10 62 3.0E-15 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMK58_18980 1fc7bd7a2b450e8b66c2c1171c36871a 482 Pfam PF06114 IrrE N-terminal-like domain 194 313 6.6E-18 T 11-10-2018 IPR010359 IrrE N-terminal-like domain AMK58_18980 1fc7bd7a2b450e8b66c2c1171c36871a 482 PIRSF PIRSF019251 1 475 1.7E-200 T 11-10-2018 IPR026281 HTH-type transcriptional regulator RamB GO:0006355 AMK58_18980 1fc7bd7a2b450e8b66c2c1171c36871a 482 Gene3D G3DSA:1.10.260.40 3 72 7.8E-17 T 11-10-2018 AMK58_28385 5dac442f62b1dbab8ec214a2c1e39a28 311 SUPERFAMILY SSF46785 112 219 1.63E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_28385 5dac442f62b1dbab8ec214a2c1e39a28 311 Gene3D G3DSA:1.10.10.10 123 223 8.9E-14 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_28385 5dac442f62b1dbab8ec214a2c1e39a28 311 Pfam PF01051 Initiator Replication protein 1 211 7.8E-27 T 11-10-2018 IPR000525 Initiator Rep protein GO:0003887|GO:0005727|GO:0006270 AMK58_02235 9d78484707e228a6d5df6e8ffac7229f 394 Gene3D G3DSA:1.20.1720.10 10 386 2.4E-106 T 11-10-2018 AMK58_02235 9d78484707e228a6d5df6e8ffac7229f 394 SUPERFAMILY SSF103473 8 389 2.75E-58 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_02235 9d78484707e228a6d5df6e8ffac7229f 394 PRINTS PR01035 Tetracycline resistance protein signature 49 68 5.4E-8 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMK58_02235 9d78484707e228a6d5df6e8ffac7229f 394 PRINTS PR01035 Tetracycline resistance protein signature 134 156 5.4E-8 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMK58_02235 9d78484707e228a6d5df6e8ffac7229f 394 PRINTS PR01035 Tetracycline resistance protein signature 19 35 5.4E-8 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMK58_02235 9d78484707e228a6d5df6e8ffac7229f 394 PRINTS PR01035 Tetracycline resistance protein signature 307 327 5.4E-8 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMK58_02235 9d78484707e228a6d5df6e8ffac7229f 394 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 10 383 6.6E-94 T 11-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 AMK58_02235 9d78484707e228a6d5df6e8ffac7229f 394 Pfam PF07690 Major Facilitator Superfamily 18 356 7.5E-39 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMK58_06090 1dd6beca8ffb5635a5b955f20c647cc2 804 TIGRFAM TIGR00763 lon: endopeptidase La 11 771 4.0E-303 T 11-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 AMK58_06090 1dd6beca8ffb5635a5b955f20c647cc2 804 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 595 611 7.0E-55 T 11-10-2018 AMK58_06090 1dd6beca8ffb5635a5b955f20c647cc2 804 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 726 744 7.0E-55 T 11-10-2018 AMK58_06090 1dd6beca8ffb5635a5b955f20c647cc2 804 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 673 692 7.0E-55 T 11-10-2018 AMK58_06090 1dd6beca8ffb5635a5b955f20c647cc2 804 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 703 722 7.0E-55 T 11-10-2018 AMK58_06090 1dd6beca8ffb5635a5b955f20c647cc2 804 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 355 374 7.0E-55 T 11-10-2018 AMK58_06090 1dd6beca8ffb5635a5b955f20c647cc2 804 SUPERFAMILY SSF52540 313 586 1.14E-52 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_06090 1dd6beca8ffb5635a5b955f20c647cc2 804 SUPERFAMILY SSF88697 11 200 1.47E-50 T 11-10-2018 IPR015947 PUA-like superfamily AMK58_06090 1dd6beca8ffb5635a5b955f20c647cc2 804 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 676 684 - T 11-10-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 AMK58_06090 1dd6beca8ffb5635a5b955f20c647cc2 804 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 570 772 1.7E-98 T 11-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 AMK58_06090 1dd6beca8ffb5635a5b955f20c647cc2 804 Gene3D G3DSA:3.30.230.10 593 781 5.3E-80 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMK58_06090 1dd6beca8ffb5635a5b955f20c647cc2 804 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 10 200 1.2E-42 T 11-10-2018 IPR003111 Lon, substrate-binding domain AMK58_06090 1dd6beca8ffb5635a5b955f20c647cc2 804 PIRSF PIRSF001174 2 775 0.0 T 11-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 AMK58_06090 1dd6beca8ffb5635a5b955f20c647cc2 804 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 351 487 1.9E-20 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMK58_06090 1dd6beca8ffb5635a5b955f20c647cc2 804 SMART SM00382 347 504 7.8E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_06090 1dd6beca8ffb5635a5b955f20c647cc2 804 Hamap MF_01973 Lon protease [lon]. 10 772 72.206 T 11-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 AMK58_06090 1dd6beca8ffb5635a5b955f20c647cc2 804 SUPERFAMILY SSF54211 595 771 1.29E-58 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMK58_06090 1dd6beca8ffb5635a5b955f20c647cc2 804 SMART SM00464 9 201 7.7E-87 T 11-10-2018 IPR003111 Lon, substrate-binding domain AMK58_06090 1dd6beca8ffb5635a5b955f20c647cc2 804 Gene3D G3DSA:1.20.58.1480 120 244 1.0E-45 T 11-10-2018 AMK58_06090 1dd6beca8ffb5635a5b955f20c647cc2 804 Gene3D G3DSA:3.40.50.300 313 489 2.4E-63 T 11-10-2018 AMK58_06090 1dd6beca8ffb5635a5b955f20c647cc2 804 Gene3D G3DSA:1.10.8.60 490 584 4.1E-30 T 11-10-2018 AMK58_06090 1dd6beca8ffb5635a5b955f20c647cc2 804 Gene3D G3DSA:2.30.130.40 8 116 1.9E-33 T 11-10-2018 AMK58_06875 b734c71317beae5a97a187ce0eadf64d 151 SMART SM00116 13 65 7.3E-4 T 11-10-2018 IPR000644 CBS domain AMK58_06875 b734c71317beae5a97a187ce0eadf64d 151 SMART SM00116 83 130 5.2E-12 T 11-10-2018 IPR000644 CBS domain AMK58_06875 b734c71317beae5a97a187ce0eadf64d 151 Pfam PF00571 CBS domain 13 64 1.8E-7 T 11-10-2018 IPR000644 CBS domain AMK58_06875 b734c71317beae5a97a187ce0eadf64d 151 Pfam PF00571 CBS domain 76 130 9.9E-15 T 11-10-2018 IPR000644 CBS domain AMK58_06875 b734c71317beae5a97a187ce0eadf64d 151 SUPERFAMILY SSF54631 1 131 1.21E-28 T 11-10-2018 AMK58_06875 b734c71317beae5a97a187ce0eadf64d 151 Gene3D G3DSA:3.10.580.10 1 145 3.0E-35 T 11-10-2018 AMK58_10560 09e74ef42b1a35c32e499868560d3626 814 Gene3D G3DSA:1.25.40.20 728 814 3.9E-24 T 11-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily AMK58_10560 09e74ef42b1a35c32e499868560d3626 814 Gene3D G3DSA:1.25.40.20 633 727 1.3E-21 T 11-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily AMK58_10560 09e74ef42b1a35c32e499868560d3626 814 SUPERFAMILY SSF48403 637 813 4.5E-43 T 11-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily AMK58_10560 09e74ef42b1a35c32e499868560d3626 814 Pfam PF12796 Ankyrin repeats (3 copies) 724 786 2.9E-12 T 11-10-2018 IPR020683 Ankyrin repeat-containing domain AMK58_10560 09e74ef42b1a35c32e499868560d3626 814 Pfam PF12796 Ankyrin repeats (3 copies) 644 723 1.0E-10 T 11-10-2018 IPR020683 Ankyrin repeat-containing domain AMK58_10560 09e74ef42b1a35c32e499868560d3626 814 SMART SM00248 758 787 6.5E-5 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMK58_10560 09e74ef42b1a35c32e499868560d3626 814 SMART SM00248 659 688 0.2 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMK58_10560 09e74ef42b1a35c32e499868560d3626 814 SMART SM00248 725 754 1.1E-4 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMK58_10560 09e74ef42b1a35c32e499868560d3626 814 SMART SM00248 692 721 0.024 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMK58_21210 45a69294677cc1f00fc7dd17b4e6b61e 363 SUPERFAMILY SSF56801 139 338 2.62E-6 T 11-10-2018 AMK58_21210 45a69294677cc1f00fc7dd17b4e6b61e 363 Pfam PF04443 Acyl-protein synthetase, LuxE 18 351 2.3E-22 T 11-10-2018 IPR007534 Acyl-protein synthetase, LuxE GO:0008218|GO:0047474 MetaCyc: PWY-7723 AMK58_21210 45a69294677cc1f00fc7dd17b4e6b61e 363 Gene3D G3DSA:3.40.50.12780 15 312 1.1E-11 T 11-10-2018 AMK58_23475 e93fdfabe318d632eecf0158becc1911 500 Gene3D G3DSA:3.10.105.10 256 473 7.2E-125 T 11-10-2018 AMK58_23475 e93fdfabe318d632eecf0158becc1911 500 Gene3D G3DSA:3.40.190.10 181 483 7.2E-125 T 11-10-2018 AMK58_23475 e93fdfabe318d632eecf0158becc1911 500 Gene3D G3DSA:3.90.76.10 36 180 7.2E-125 T 11-10-2018 AMK58_23475 e93fdfabe318d632eecf0158becc1911 500 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 69 417 1.6E-91 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain AMK58_23475 e93fdfabe318d632eecf0158becc1911 500 SUPERFAMILY SSF53850 23 498 1.56E-134 T 11-10-2018 AMK58_23475 e93fdfabe318d632eecf0158becc1911 500 PIRSF PIRSF002741 17 497 3.6E-102 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMK58_23475 e93fdfabe318d632eecf0158becc1911 500 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 75 97 - T 11-10-2018 IPR023765 Solute-binding protein family 5, conserved site AMK58_03495 ce54d1adb92be485587179f825c91dde 147 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 64 141 2.3E-15 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_03495 ce54d1adb92be485587179f825c91dde 147 Gene3D G3DSA:1.10.760.10 51 147 7.2E-19 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_03495 ce54d1adb92be485587179f825c91dde 147 TIGRFAM TIGR04494 c550_PedF: cytochrome c-550 PedF 17 147 1.5E-63 T 11-10-2018 IPR030991 Cytochrome c-550 PedF AMK58_03495 ce54d1adb92be485587179f825c91dde 147 SUPERFAMILY SSF46626 10 144 1.58E-18 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_12295 4b6e2ed431684d4ae350f763356ae59d 208 SMART SM00855 5 156 1.5E-8 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMK58_12295 4b6e2ed431684d4ae350f763356ae59d 208 PIRSF PIRSF000709 24 183 1.4E-7 T 11-10-2018 AMK58_12295 4b6e2ed431684d4ae350f763356ae59d 208 SUPERFAMILY SSF53254 5 200 1.07E-36 T 11-10-2018 IPR029033 Histidine phosphatase superfamily AMK58_12295 4b6e2ed431684d4ae350f763356ae59d 208 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 7 187 1.4E-37 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMK58_12295 4b6e2ed431684d4ae350f763356ae59d 208 Gene3D G3DSA:3.40.50.1240 4 203 6.1E-34 T 11-10-2018 IPR029033 Histidine phosphatase superfamily AMK58_26640 efe83cf3a88fbe4c33b803f6b55eb559 142 Pfam PF00989 PAS fold 8 119 4.0E-16 T 11-10-2018 IPR013767 PAS fold GO:0006355 AMK58_26640 efe83cf3a88fbe4c33b803f6b55eb559 142 Gene3D G3DSA:3.30.450.20 2 140 1.5E-26 T 11-10-2018 AMK58_26640 efe83cf3a88fbe4c33b803f6b55eb559 142 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 7 130 7.6E-20 T 11-10-2018 IPR000014 PAS domain AMK58_26640 efe83cf3a88fbe4c33b803f6b55eb559 142 SMART SM00091 5 71 5.6E-10 T 11-10-2018 IPR000014 PAS domain AMK58_26640 efe83cf3a88fbe4c33b803f6b55eb559 142 SUPERFAMILY SSF55785 16 132 1.77E-26 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_03155 ccbf5d6788b97782fa690fe2da6e52a8 301 Pfam PF03466 LysR substrate binding domain 90 293 5.1E-42 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_03155 ccbf5d6788b97782fa690fe2da6e52a8 301 Gene3D G3DSA:3.40.190.290 93 299 2.0E-39 T 11-10-2018 AMK58_03155 ccbf5d6788b97782fa690fe2da6e52a8 301 SUPERFAMILY SSF53850 91 297 2.17E-44 T 11-10-2018 AMK58_03155 ccbf5d6788b97782fa690fe2da6e52a8 301 SUPERFAMILY SSF46785 4 111 1.69E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_03155 ccbf5d6788b97782fa690fe2da6e52a8 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 64 3.3E-13 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_03155 ccbf5d6788b97782fa690fe2da6e52a8 301 Gene3D G3DSA:1.10.10.10 4 88 1.3E-16 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_28520 0e7c5e5c822e31ed65804ff2434d10d4 356 Pfam PF13358 DDE superfamily endonuclease 172 318 6.1E-19 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain AMK58_28520 0e7c5e5c822e31ed65804ff2434d10d4 356 SUPERFAMILY SSF46689 22 133 3.76E-12 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_28520 0e7c5e5c822e31ed65804ff2434d10d4 356 SUPERFAMILY SSF53098 204 330 1.31E-5 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMK58_28520 0e7c5e5c822e31ed65804ff2434d10d4 356 Pfam PF13384 Homeodomain-like domain 29 76 1.9E-11 T 11-10-2018 AMK58_01050 74cc7c5b1e0d24ed608ef6f5d5e46ede 281 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 9 216 2.3E-70 T 11-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 AMK58_01050 74cc7c5b1e0d24ed608ef6f5d5e46ede 281 Gene3D G3DSA:1.20.58.220 1 112 1.1E-38 T 11-10-2018 IPR038078 PhoU-like domain superfamily AMK58_01050 74cc7c5b1e0d24ed608ef6f5d5e46ede 281 SUPERFAMILY SSF109755 8 226 4.6E-72 T 11-10-2018 AMK58_01050 74cc7c5b1e0d24ed608ef6f5d5e46ede 281 Gene3D G3DSA:1.20.58.220 113 227 2.4E-37 T 11-10-2018 IPR038078 PhoU-like domain superfamily AMK58_01050 74cc7c5b1e0d24ed608ef6f5d5e46ede 281 Pfam PF01895 PhoU domain 124 208 1.9E-20 T 11-10-2018 IPR026022 PhoU domain AMK58_01050 74cc7c5b1e0d24ed608ef6f5d5e46ede 281 Pfam PF01895 PhoU domain 21 108 3.7E-23 T 11-10-2018 IPR026022 PhoU domain AMK58_07375 3fc116a2c7b7c4a627cc13ad297c7e1b 90 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 38 90 7.0E-21 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_07375 3fc116a2c7b7c4a627cc13ad297c7e1b 90 Pfam PF01084 Ribosomal protein S18 37 85 3.7E-26 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_07375 3fc116a2c7b7c4a627cc13ad297c7e1b 90 ProSitePatterns PS00057 Ribosomal protein S18 signature. 38 61 - T 11-10-2018 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_07375 3fc116a2c7b7c4a627cc13ad297c7e1b 90 TIGRFAM TIGR00165 S18: ribosomal protein bS18 21 89 4.7E-31 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_07375 3fc116a2c7b7c4a627cc13ad297c7e1b 90 SUPERFAMILY SSF46911 17 90 8.24E-29 T 11-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_07375 3fc116a2c7b7c4a627cc13ad297c7e1b 90 Gene3D G3DSA:4.10.640.10 9 90 3.1E-29 T 11-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_07375 3fc116a2c7b7c4a627cc13ad297c7e1b 90 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 19 90 22.336 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_07375 3fc116a2c7b7c4a627cc13ad297c7e1b 90 PRINTS PR00974 Ribosomal protein S18 family signature 77 87 6.7E-19 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_07375 3fc116a2c7b7c4a627cc13ad297c7e1b 90 PRINTS PR00974 Ribosomal protein S18 family signature 55 62 6.7E-19 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_07375 3fc116a2c7b7c4a627cc13ad297c7e1b 90 PRINTS PR00974 Ribosomal protein S18 family signature 63 77 6.7E-19 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_07375 3fc116a2c7b7c4a627cc13ad297c7e1b 90 PRINTS PR00974 Ribosomal protein S18 family signature 45 55 6.7E-19 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_25005 245fce35d7306ef0279b63d17934b7bb 588 Pfam PF00005 ABC transporter 362 511 4.9E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_25005 245fce35d7306ef0279b63d17934b7bb 588 SUPERFAMILY SSF90123 15 335 9.42E-47 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMK58_25005 245fce35d7306ef0279b63d17934b7bb 588 ProSitePatterns PS00211 ABC transporters family signature. 483 497 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_25005 245fce35d7306ef0279b63d17934b7bb 588 SMART SM00382 371 557 1.1E-18 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_25005 245fce35d7306ef0279b63d17934b7bb 588 Gene3D G3DSA:1.20.1560.10 12 333 1.0E-43 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMK58_25005 245fce35d7306ef0279b63d17934b7bb 588 Pfam PF00664 ABC transporter transmembrane region 33 292 1.9E-17 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMK58_25005 245fce35d7306ef0279b63d17934b7bb 588 SUPERFAMILY SSF52540 341 581 1.28E-85 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_25005 245fce35d7306ef0279b63d17934b7bb 588 Gene3D G3DSA:3.40.50.300 340 587 3.0E-89 T 11-10-2018 AMK58_25535 c95dff5665c64542881bf6ab6bdb973a 217 Gene3D G3DSA:3.30.70.100 2 96 6.6E-14 T 11-10-2018 AMK58_25535 c95dff5665c64542881bf6ab6bdb973a 217 Gene3D G3DSA:3.30.70.100 112 196 7.9E-16 T 11-10-2018 AMK58_25535 c95dff5665c64542881bf6ab6bdb973a 217 SUPERFAMILY SSF54909 8 74 4.98E-9 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel AMK58_25535 c95dff5665c64542881bf6ab6bdb973a 217 Pfam PF03992 Antibiotic biosynthesis monooxygenase 118 189 2.2E-7 T 11-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain AMK58_25535 c95dff5665c64542881bf6ab6bdb973a 217 Pfam PF03992 Antibiotic biosynthesis monooxygenase 13 74 8.0E-5 T 11-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain AMK58_25535 c95dff5665c64542881bf6ab6bdb973a 217 SUPERFAMILY SSF54909 116 204 6.19E-10 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel AMK58_16875 29e2c2f80a72d7721f9b0f73c4c41d06 123 Pfam PF02699 Preprotein translocase subunit 23 98 5.8E-30 T 11-10-2018 IPR003849 Preprotein translocase YajC AMK58_16875 29e2c2f80a72d7721f9b0f73c4c41d06 123 PRINTS PR01853 Bacterial YajC preprotein translocase signature 21 41 1.3E-17 T 11-10-2018 IPR003849 Preprotein translocase YajC AMK58_16875 29e2c2f80a72d7721f9b0f73c4c41d06 123 PRINTS PR01853 Bacterial YajC preprotein translocase signature 59 77 1.3E-17 T 11-10-2018 IPR003849 Preprotein translocase YajC AMK58_16875 29e2c2f80a72d7721f9b0f73c4c41d06 123 SMART SM01323 19 102 5.5E-42 T 11-10-2018 IPR003849 Preprotein translocase YajC AMK58_16875 29e2c2f80a72d7721f9b0f73c4c41d06 123 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 20 102 7.5E-29 T 11-10-2018 IPR003849 Preprotein translocase YajC AMK58_01945 5f2292e77902258e3a50982c4c29943b 768 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 640 749 1.4E-20 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_01945 5f2292e77902258e3a50982c4c29943b 768 PRINTS PR00344 Bacterial sensor protein C-terminal signature 734 747 6.5E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_01945 5f2292e77902258e3a50982c4c29943b 768 PRINTS PR00344 Bacterial sensor protein C-terminal signature 709 727 6.5E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_01945 5f2292e77902258e3a50982c4c29943b 768 PRINTS PR00344 Bacterial sensor protein C-terminal signature 678 692 6.5E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_01945 5f2292e77902258e3a50982c4c29943b 768 PRINTS PR00344 Bacterial sensor protein C-terminal signature 696 706 6.5E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_01945 5f2292e77902258e3a50982c4c29943b 768 Gene3D G3DSA:1.10.287.130 495 591 4.9E-17 T 11-10-2018 AMK58_01945 5f2292e77902258e3a50982c4c29943b 768 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 363 481 8.1E-9 T 11-10-2018 IPR000014 PAS domain AMK58_01945 5f2292e77902258e3a50982c4c29943b 768 Gene3D G3DSA:3.30.450.20 363 492 1.3E-15 T 11-10-2018 AMK58_01945 5f2292e77902258e3a50982c4c29943b 768 SUPERFAMILY SSF55874 588 751 1.3E-36 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_01945 5f2292e77902258e3a50982c4c29943b 768 Gene3D G3DSA:3.30.565.10 594 751 4.8E-37 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_01945 5f2292e77902258e3a50982c4c29943b 768 SUPERFAMILY SSF55785 352 473 1.48E-13 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_01945 5f2292e77902258e3a50982c4c29943b 768 SMART SM00387 637 750 3.4E-24 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_01945 5f2292e77902258e3a50982c4c29943b 768 Pfam PF13426 PAS domain 377 473 3.1E-7 T 11-10-2018 IPR000014 PAS domain AMK58_04475 6cd375523e24ec30ac831a10db3bfd89 201 SMART SM00986 15 193 2.8E-14 T 11-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMK58_04475 6cd375523e24ec30ac831a10db3bfd89 201 SMART SM00987 15 193 2.8E-14 T 11-10-2018 AMK58_04475 6cd375523e24ec30ac831a10db3bfd89 201 Gene3D G3DSA:3.40.470.10 11 201 3.8E-41 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMK58_04475 6cd375523e24ec30ac831a10db3bfd89 201 Pfam PF03167 Uracil DNA glycosylase superfamily 119 191 2.3E-7 T 11-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMK58_04475 6cd375523e24ec30ac831a10db3bfd89 201 Pfam PF03167 Uracil DNA glycosylase superfamily 20 88 6.6E-16 T 11-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMK58_04475 6cd375523e24ec30ac831a10db3bfd89 201 SUPERFAMILY SSF52141 19 193 1.02E-29 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMK58_10390 b5bb49601bb69cd8bca8204b904573ff 102 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 7.6E-48 T 11-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10390 b5bb49601bb69cd8bca8204b904573ff 102 Gene3D G3DSA:3.30.70.600 1 102 1.1E-40 T 11-10-2018 IPR036838 Ribosomal protein S10 domain superfamily AMK58_10390 b5bb49601bb69cd8bca8204b904573ff 102 SUPERFAMILY SSF54999 6 102 1.44E-40 T 11-10-2018 IPR036838 Ribosomal protein S10 domain superfamily AMK58_10390 b5bb49601bb69cd8bca8204b904573ff 102 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 11-10-2018 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10390 b5bb49601bb69cd8bca8204b904573ff 102 Pfam PF00338 Ribosomal protein S10p/S20e 7 101 4.2E-38 T 11-10-2018 IPR027486 Ribosomal protein S10 domain AMK58_10390 b5bb49601bb69cd8bca8204b904573ff 102 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 28.026 T 11-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10390 b5bb49601bb69cd8bca8204b904573ff 102 SMART SM01403 7 101 3.3E-61 T 11-10-2018 IPR027486 Ribosomal protein S10 domain AMK58_10390 b5bb49601bb69cd8bca8204b904573ff 102 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 5.7E-19 T 11-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10390 b5bb49601bb69cd8bca8204b904573ff 102 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 5.7E-19 T 11-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10390 b5bb49601bb69cd8bca8204b904573ff 102 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 5.7E-19 T 11-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_11940 feb0c3a6a283797e81afcbae06d310a2 545 SUPERFAMILY SSF52540 282 528 1.42E-66 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_11940 feb0c3a6a283797e81afcbae06d310a2 545 Pfam PF00005 ABC transporter 307 457 7.6E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_11940 feb0c3a6a283797e81afcbae06d310a2 545 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 240 270 4.5E-6 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMK58_11940 feb0c3a6a283797e81afcbae06d310a2 545 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 508 540 4.8E-4 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMK58_11940 feb0c3a6a283797e81afcbae06d310a2 545 ProSitePatterns PS00211 ABC transporters family signature. 161 175 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_11940 feb0c3a6a283797e81afcbae06d310a2 545 Gene3D G3DSA:3.40.50.300 279 544 1.6E-84 T 11-10-2018 AMK58_11940 feb0c3a6a283797e81afcbae06d310a2 545 Gene3D G3DSA:3.40.50.300 7 278 1.1E-87 T 11-10-2018 AMK58_11940 feb0c3a6a283797e81afcbae06d310a2 545 Pfam PF00005 ABC transporter 30 188 2.6E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_11940 feb0c3a6a283797e81afcbae06d310a2 545 SMART SM00382 38 238 6.6E-18 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_11940 feb0c3a6a283797e81afcbae06d310a2 545 SMART SM00382 315 506 2.4E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_11940 feb0c3a6a283797e81afcbae06d310a2 545 ProSitePatterns PS00211 ABC transporters family signature. 429 443 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_11940 feb0c3a6a283797e81afcbae06d310a2 545 SUPERFAMILY SSF52540 9 260 2.0E-71 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_26700 ac89e9f876f07f960ed346b53155c402 689 Gene3D G3DSA:2.60.60.40 9 128 3.6E-7 T 11-10-2018 AMK58_26700 ac89e9f876f07f960ed346b53155c402 689 Gene3D G3DSA:2.60.60.40 165 280 2.1E-9 T 11-10-2018 AMK58_26700 ac89e9f876f07f960ed346b53155c402 689 Pfam PF16841 Ca-dependent carbohydrate-binding module xylan-binding 12 102 6.3E-26 T 11-10-2018 IPR031768 Carbohydrate binding module, xylan-binding domain MetaCyc: PWY-6717|MetaCyc: PWY-6784 AMK58_26700 ac89e9f876f07f960ed346b53155c402 689 Pfam PF16841 Ca-dependent carbohydrate-binding module xylan-binding 168 259 2.0E-30 T 11-10-2018 IPR031768 Carbohydrate binding module, xylan-binding domain MetaCyc: PWY-6717|MetaCyc: PWY-6784 AMK58_26700 ac89e9f876f07f960ed346b53155c402 689 SUPERFAMILY SSF51445 325 670 1.8E-79 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily AMK58_26700 ac89e9f876f07f960ed346b53155c402 689 Gene3D G3DSA:3.20.20.80 323 683 1.5E-116 T 11-10-2018 AMK58_26700 ac89e9f876f07f960ed346b53155c402 689 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 337 657 8.5E-61 T 11-10-2018 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 AMK58_26700 ac89e9f876f07f960ed346b53155c402 689 ProSitePatterns PS00659 Glycosyl hydrolases family 5 signature. 480 489 - T 11-10-2018 IPR018087 Glycoside hydrolase, family 5, conserved site GO:0004553|GO:0005975 AMK58_19470 e3172d935a948bc3fcf4aa200e48bff2 554 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 22 476 9.7E-94 T 11-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AMK58_19470 e3172d935a948bc3fcf4aa200e48bff2 554 Pfam PF08345 Flagellar M-ring protein C-terminal 247 412 3.0E-44 T 11-10-2018 IPR013556 Flagellar M-ring C-terminal AMK58_19470 e3172d935a948bc3fcf4aa200e48bff2 554 Gene3D G3DSA:3.30.300.30 115 213 4.4E-14 T 11-10-2018 AMK58_19470 e3172d935a948bc3fcf4aa200e48bff2 554 PIRSF PIRSF004862 1 554 8.6E-139 T 11-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AMK58_19470 e3172d935a948bc3fcf4aa200e48bff2 554 Pfam PF01514 Secretory protein of YscJ/FliF family 24 213 3.8E-68 T 11-10-2018 IPR006182 Secretory protein YscJ/FliF AMK58_19470 e3172d935a948bc3fcf4aa200e48bff2 554 PRINTS PR01009 Flagellar M-ring protein signature 260 278 9.3E-38 T 11-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AMK58_19470 e3172d935a948bc3fcf4aa200e48bff2 554 PRINTS PR01009 Flagellar M-ring protein signature 335 359 9.3E-38 T 11-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AMK58_19470 e3172d935a948bc3fcf4aa200e48bff2 554 PRINTS PR01009 Flagellar M-ring protein signature 146 160 9.3E-38 T 11-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AMK58_19470 e3172d935a948bc3fcf4aa200e48bff2 554 PRINTS PR01009 Flagellar M-ring protein signature 114 132 9.3E-38 T 11-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AMK58_19470 e3172d935a948bc3fcf4aa200e48bff2 554 PRINTS PR01009 Flagellar M-ring protein signature 189 207 9.3E-38 T 11-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AMK58_04525 1d545d2c7c6937737c1515dc2c4a6de8 240 Gene3D G3DSA:1.10.10.10 144 238 1.8E-31 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_04525 1d545d2c7c6937737c1515dc2c4a6de8 240 Pfam PF13545 Crp-like helix-turn-helix domain 159 227 2.1E-12 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMK58_04525 1d545d2c7c6937737c1515dc2c4a6de8 240 Pfam PF00027 Cyclic nucleotide-binding domain 40 126 7.8E-17 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_04525 1d545d2c7c6937737c1515dc2c4a6de8 240 SMART SM00100 21 139 1.1E-19 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_04525 1d545d2c7c6937737c1515dc2c4a6de8 240 SUPERFAMILY SSF46785 158 230 6.17E-8 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_04525 1d545d2c7c6937737c1515dc2c4a6de8 240 SMART SM00419 174 221 4.7E-6 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMK58_04525 1d545d2c7c6937737c1515dc2c4a6de8 240 SUPERFAMILY SSF51206 16 152 8.25E-32 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like AMK58_04525 1d545d2c7c6937737c1515dc2c4a6de8 240 Gene3D G3DSA:2.60.120.10 8 143 6.2E-34 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_11665 facbbdad39ef742755e29ad540633ed4 227 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 153 173 1.6E-6 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMK58_11665 facbbdad39ef742755e29ad540633ed4 227 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 135 151 1.6E-6 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMK58_11665 facbbdad39ef742755e29ad540633ed4 227 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 11 22 1.6E-6 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMK58_11665 facbbdad39ef742755e29ad540633ed4 227 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 105 118 1.6E-6 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMK58_11665 facbbdad39ef742755e29ad540633ed4 227 Gene3D G3DSA:1.10.150.240 24 92 1.6E-47 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 AMK58_11665 facbbdad39ef742755e29ad540633ed4 227 Gene3D G3DSA:3.40.50.1000 12 207 1.6E-47 T 11-10-2018 IPR023214 HAD superfamily AMK58_11665 facbbdad39ef742755e29ad540633ed4 227 Pfam PF13419 Haloacid dehalogenase-like hydrolase 14 190 1.8E-21 T 11-10-2018 AMK58_11665 facbbdad39ef742755e29ad540633ed4 227 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 142 190 1.7E-13 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMK58_11665 facbbdad39ef742755e29ad540633ed4 227 SUPERFAMILY SSF56784 11 212 7.11E-47 T 11-10-2018 IPR036412 HAD-like superfamily AMK58_03675 3967a33f810caffbb7b0f041648c654f 350 SMART SM00244 23 181 1.5E-55 T 11-10-2018 IPR001107 Band 7 domain AMK58_03675 3967a33f810caffbb7b0f041648c654f 350 Pfam PF01145 SPFH domain / Band 7 family 27 197 1.5E-32 T 11-10-2018 IPR001107 Band 7 domain AMK58_03675 3967a33f810caffbb7b0f041648c654f 350 PRINTS PR00721 Stomatin signature 78 99 3.5E-29 T 11-10-2018 IPR001972 Stomatin family GO:0016020 AMK58_03675 3967a33f810caffbb7b0f041648c654f 350 PRINTS PR00721 Stomatin signature 113 130 3.5E-29 T 11-10-2018 IPR001972 Stomatin family GO:0016020 AMK58_03675 3967a33f810caffbb7b0f041648c654f 350 PRINTS PR00721 Stomatin signature 133 156 3.5E-29 T 11-10-2018 IPR001972 Stomatin family GO:0016020 AMK58_03675 3967a33f810caffbb7b0f041648c654f 350 PRINTS PR00721 Stomatin signature 157 175 3.5E-29 T 11-10-2018 IPR001972 Stomatin family GO:0016020 AMK58_03675 3967a33f810caffbb7b0f041648c654f 350 PRINTS PR00721 Stomatin signature 176 197 3.5E-29 T 11-10-2018 IPR001972 Stomatin family GO:0016020 AMK58_03675 3967a33f810caffbb7b0f041648c654f 350 ProSitePatterns PS01270 Band 7 protein family signature. 137 165 - T 11-10-2018 IPR018080 Band 7/stomatin-like, conserved site AMK58_03675 3967a33f810caffbb7b0f041648c654f 350 Gene3D G3DSA:3.30.479.30 51 183 1.9E-39 T 11-10-2018 AMK58_03675 3967a33f810caffbb7b0f041648c654f 350 SUPERFAMILY SSF117892 54 188 1.57E-40 T 11-10-2018 IPR036013 Band 7/SPFH domain superfamily AMK58_09040 61d3fcff0d40c5d859168f29b398c446 677 Pfam PF05787 Bacterial protein of unknown function (DUF839) 87 626 3.8E-189 T 11-10-2018 IPR008557 Protein of unknown function DUF839 AMK58_09040 61d3fcff0d40c5d859168f29b398c446 677 SUPERFAMILY SSF63829 329 629 5.49E-9 T 11-10-2018 AMK58_01415 b2ffdfb509499035710c7a897f70153a 178 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 7 171 1.6E-53 T 11-10-2018 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 AMK58_01415 b2ffdfb509499035710c7a897f70153a 178 Gene3D G3DSA:3.40.30.10 23 177 1.7E-41 T 11-10-2018 AMK58_01415 b2ffdfb509499035710c7a897f70153a 178 Pfam PF08534 Redoxin 38 163 5.1E-14 T 11-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 AMK58_01415 b2ffdfb509499035710c7a897f70153a 178 SUPERFAMILY SSF52833 32 171 2.67E-35 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_04210 5c76c4eb8aeb1fd507b32866b7774165 254 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 33 250 4.0E-19 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMK58_04210 5c76c4eb8aeb1fd507b32866b7774165 254 SUPERFAMILY SSF53850 31 251 8.54E-33 T 11-10-2018 AMK58_04210 5c76c4eb8aeb1fd507b32866b7774165 254 Gene3D G3DSA:3.40.190.10 33 247 5.3E-25 T 11-10-2018 AMK58_04210 5c76c4eb8aeb1fd507b32866b7774165 254 Gene3D G3DSA:3.40.190.10 111 208 5.3E-25 T 11-10-2018 AMK58_04210 5c76c4eb8aeb1fd507b32866b7774165 254 SMART SM00062 28 253 3.0E-4 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMK58_15585 a8debe6ea209760e58ebf60b6120c90f 286 Gene3D G3DSA:3.40.190.290 90 280 4.4E-25 T 11-10-2018 AMK58_15585 a8debe6ea209760e58ebf60b6120c90f 286 SUPERFAMILY SSF53850 88 281 1.99E-34 T 11-10-2018 AMK58_15585 a8debe6ea209760e58ebf60b6120c90f 286 Pfam PF03466 LysR substrate binding domain 87 277 7.4E-30 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_15585 a8debe6ea209760e58ebf60b6120c90f 286 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 61 7.7E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_15585 a8debe6ea209760e58ebf60b6120c90f 286 Gene3D G3DSA:1.10.10.10 2 86 2.2E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_15585 a8debe6ea209760e58ebf60b6120c90f 286 SUPERFAMILY SSF46785 1 111 1.09E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_05140 00d8a8b3753768bd25587aa5d6116ed3 195 Gene3D G3DSA:3.40.630.30 2 164 1.9E-45 T 11-10-2018 AMK58_05140 00d8a8b3753768bd25587aa5d6116ed3 195 SUPERFAMILY SSF55729 1 154 5.8E-40 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_05140 00d8a8b3753768bd25587aa5d6116ed3 195 Pfam PF13302 Acetyltransferase (GNAT) domain 11 152 3.1E-32 T 11-10-2018 IPR000182 GNAT domain AMK58_08625 fa9e051f33ee817f0e09feb1ee04f54b 296 Pfam PF02569 Pantoate-beta-alanine ligase 18 291 4.0E-97 T 11-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 AMK58_08625 fa9e051f33ee817f0e09feb1ee04f54b 296 Hamap MF_00158 Pantothenate synthetase [panC]. 17 293 38.636 T 11-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 AMK58_08625 fa9e051f33ee817f0e09feb1ee04f54b 296 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 39 90 5.0E-8 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AMK58_08625 fa9e051f33ee817f0e09feb1ee04f54b 296 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 18 291 1.2E-86 T 11-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 AMK58_08625 fa9e051f33ee817f0e09feb1ee04f54b 296 Gene3D G3DSA:3.30.1300.10 190 296 5.0E-33 T 11-10-2018 AMK58_08625 fa9e051f33ee817f0e09feb1ee04f54b 296 SUPERFAMILY SSF52374 15 293 8.58E-103 T 11-10-2018 AMK58_08625 fa9e051f33ee817f0e09feb1ee04f54b 296 Gene3D G3DSA:3.40.50.620 9 189 6.9E-69 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_03395 9f667f8e360530d01fd940ff00753972 690 Gene3D G3DSA:3.30.980.40 191 295 3.8E-27 T 11-10-2018 AMK58_03395 9f667f8e360530d01fd940ff00753972 690 Gene3D G3DSA:3.40.50.300 296 599 8.1E-119 T 11-10-2018 AMK58_03395 9f667f8e360530d01fd940ff00753972 690 Pfam PF09397 Ftsk gamma domain 618 678 2.2E-25 T 11-10-2018 IPR018541 FtsK gamma domain AMK58_03395 9f667f8e360530d01fd940ff00753972 690 Gene3D G3DSA:1.10.10.10 612 677 4.7E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_03395 9f667f8e360530d01fd940ff00753972 690 Pfam PF01580 FtsK/SpoIIIE family 299 514 4.3E-66 T 11-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 AMK58_03395 9f667f8e360530d01fd940ff00753972 690 SMART SM00382 334 535 8.8E-4 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_03395 9f667f8e360530d01fd940ff00753972 690 SMART SM00843 616 681 3.4E-34 T 11-10-2018 IPR018541 FtsK gamma domain AMK58_03395 9f667f8e360530d01fd940ff00753972 690 SUPERFAMILY SSF52540 286 585 1.34E-51 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_03395 9f667f8e360530d01fd940ff00753972 690 SUPERFAMILY SSF46785 616 681 3.17E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_15150 edcb5655c360ca1a44997dd52d2b5817 424 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 21 422 5.3E-116 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 AMK58_15150 edcb5655c360ca1a44997dd52d2b5817 424 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 8 418 9.4E-103 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit AMK58_15150 edcb5655c360ca1a44997dd52d2b5817 424 PIRSF PIRSF006066 1 424 2.4E-124 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 AMK58_15605 2fc7e7bf45c569a010878bcd14e6ed6f 176 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 10 126 9.1E-14 T 11-10-2018 AMK58_15605 2fc7e7bf45c569a010878bcd14e6ed6f 176 Gene3D G3DSA:3.10.180.10 2 156 5.9E-27 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMK58_15605 2fc7e7bf45c569a010878bcd14e6ed6f 176 SUPERFAMILY SSF54593 4 162 7.52E-26 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMK58_15355 c57c2f428b0934ff302b91538b0188c9 311 Pfam PF14267 Domain of unknown function (DUF4357) 239 286 5.3E-14 T 11-10-2018 IPR025579 Domain of unknown function DUF4357 AMK58_07160 a4cb311e7cde6ef349d920ff7f552cbf 1013 Gene3D G3DSA:3.10.560.10 151 251 1.0E-12 T 11-10-2018 AMK58_07160 a4cb311e7cde6ef349d920ff7f552cbf 1013 Gene3D G3DSA:3.10.560.10 681 764 9.4E-11 T 11-10-2018 AMK58_07160 a4cb311e7cde6ef349d920ff7f552cbf 1013 SUPERFAMILY SSF142984 772 809 4.05E-5 T 11-10-2018 AMK58_07160 a4cb311e7cde6ef349d920ff7f552cbf 1013 Pfam PF06251 Capsule biosynthesis GfcC 830 980 2.1E-16 T 11-10-2018 IPR010425 Domain of unknown function DUF1017 AMK58_07160 a4cb311e7cde6ef349d920ff7f552cbf 1013 Pfam PF02563 Polysaccharide biosynthesis/export protein 81 153 1.2E-7 T 11-10-2018 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 AMK58_07160 a4cb311e7cde6ef349d920ff7f552cbf 1013 Pfam PF10531 SLBB domain 774 809 2.6E-11 T 11-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_07160 a4cb311e7cde6ef349d920ff7f552cbf 1013 Pfam PF10531 SLBB domain 163 214 3.5E-8 T 11-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_07160 a4cb311e7cde6ef349d920ff7f552cbf 1013 Pfam PF10531 SLBB domain 691 733 1.9E-7 T 11-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_07160 a4cb311e7cde6ef349d920ff7f552cbf 1013 Gene3D G3DSA:3.10.560.10 904 978 9.1E-11 T 11-10-2018 AMK58_04965 a744e0496d3c43f017eccd2e990f62d2 243 Gene3D G3DSA:3.40.50.720 4 241 3.8E-70 T 11-10-2018 AMK58_04965 a744e0496d3c43f017eccd2e990f62d2 243 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 197 8.6E-5 T 11-10-2018 AMK58_04965 a744e0496d3c43f017eccd2e990f62d2 243 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 1.1E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_04965 a744e0496d3c43f017eccd2e990f62d2 243 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 1.1E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_04965 a744e0496d3c43f017eccd2e990f62d2 243 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 1.1E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_04965 a744e0496d3c43f017eccd2e990f62d2 243 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMK58_04965 a744e0496d3c43f017eccd2e990f62d2 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 1.2E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_04965 a744e0496d3c43f017eccd2e990f62d2 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 1.2E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_04965 a744e0496d3c43f017eccd2e990f62d2 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 1.2E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_04965 a744e0496d3c43f017eccd2e990f62d2 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 1.2E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_04965 a744e0496d3c43f017eccd2e990f62d2 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.2E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_04965 a744e0496d3c43f017eccd2e990f62d2 243 Pfam PF00106 short chain dehydrogenase 7 197 2.0E-53 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_04965 a744e0496d3c43f017eccd2e990f62d2 243 SUPERFAMILY SSF51735 3 228 6.38E-66 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_24140 8a0c6b97d6a17f625d7d1ba70e998f8f 135 ProSitePatterns PS00018 EF-hand calcium-binding domain. 113 125 - T 11-10-2018 IPR018247 EF-Hand 1, calcium-binding site AMK58_24140 8a0c6b97d6a17f625d7d1ba70e998f8f 135 Gene3D G3DSA:1.10.238.10 15 134 4.0E-12 T 11-10-2018 AMK58_24140 8a0c6b97d6a17f625d7d1ba70e998f8f 135 Pfam PF13202 EF hand 38 57 4.6E-5 T 11-10-2018 IPR002048 EF-hand domain GO:0005509 AMK58_24140 8a0c6b97d6a17f625d7d1ba70e998f8f 135 Pfam PF13202 EF hand 105 129 1.6E-7 T 11-10-2018 IPR002048 EF-hand domain GO:0005509 AMK58_24140 8a0c6b97d6a17f625d7d1ba70e998f8f 135 ProSitePatterns PS00018 EF-hand calcium-binding domain. 43 55 - T 11-10-2018 IPR018247 EF-Hand 1, calcium-binding site AMK58_24140 8a0c6b97d6a17f625d7d1ba70e998f8f 135 SUPERFAMILY SSF47473 37 130 4.33E-12 T 11-10-2018 IPR011992 EF-hand domain pair AMK58_24140 8a0c6b97d6a17f625d7d1ba70e998f8f 135 SMART SM00054 34 62 130.0 T 11-10-2018 IPR002048 EF-hand domain GO:0005509 AMK58_24140 8a0c6b97d6a17f625d7d1ba70e998f8f 135 SMART SM00054 104 132 1.1E-4 T 11-10-2018 IPR002048 EF-hand domain GO:0005509 AMK58_06480 89d7c6619c3cd1856d32bad6be00f88e 26 Pfam PF08042 PqqA family 3 21 3.2E-8 T 11-10-2018 IPR011725 Coenzyme PQQ biosynthesis protein A GO:0018189 AMK58_06480 89d7c6619c3cd1856d32bad6be00f88e 26 TIGRFAM TIGR02107 PQQ_syn_pqqA: coenzyme PQQ precursor peptide PqqA 4 24 1.5E-7 T 11-10-2018 IPR011725 Coenzyme PQQ biosynthesis protein A GO:0018189 AMK58_04325 f66202aba0cfaeba3e4e281ecaf5e9cc 962 Gene3D G3DSA:3.40.228.10 204 403 1.2E-137 T 11-10-2018 AMK58_04325 f66202aba0cfaeba3e4e281ecaf5e9cc 962 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 75 92 - T 11-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 AMK58_04325 f66202aba0cfaeba3e4e281ecaf5e9cc 962 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 27 54 8.3E-4 T 11-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal AMK58_04325 f66202aba0cfaeba3e4e281ecaf5e9cc 962 Gene3D G3DSA:2.20.25.90 70 123 2.5E-11 T 11-10-2018 AMK58_04325 f66202aba0cfaeba3e4e281ecaf5e9cc 962 Gene3D G3DSA:3.40.50.740 136 619 1.2E-137 T 11-10-2018 AMK58_04325 f66202aba0cfaeba3e4e281ecaf5e9cc 962 Pfam PF00384 Molybdopterin oxidoreductase 127 572 6.2E-57 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_04325 f66202aba0cfaeba3e4e281ecaf5e9cc 962 PIRSF PIRSF036643 795 961 4.1E-16 T 11-10-2018 AMK58_04325 f66202aba0cfaeba3e4e281ecaf5e9cc 962 PIRSF PIRSF036643 29 584 1.2E-114 T 11-10-2018 AMK58_04325 f66202aba0cfaeba3e4e281ecaf5e9cc 962 Gene3D G3DSA:2.40.40.20 778 962 5.3E-45 T 11-10-2018 AMK58_04325 f66202aba0cfaeba3e4e281ecaf5e9cc 962 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 71 123 1.2E-10 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_04325 f66202aba0cfaeba3e4e281ecaf5e9cc 962 SUPERFAMILY SSF50692 767 959 4.97E-37 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily AMK58_04325 f66202aba0cfaeba3e4e281ecaf5e9cc 962 SMART SM00926 70 124 1.6E-13 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_04325 f66202aba0cfaeba3e4e281ecaf5e9cc 962 Pfam PF01568 Molydopterin dinucleotide binding domain 829 955 1.1E-20 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 AMK58_04325 f66202aba0cfaeba3e4e281ecaf5e9cc 962 SUPERFAMILY SSF53706 68 650 1.44E-201 T 11-10-2018 AMK58_27305 1fa4d02a20b24f6855e9d0227d652d95 220 Pfam PF03975 CheD chemotactic sensory transduction 84 182 2.5E-25 T 11-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 AMK58_27305 1fa4d02a20b24f6855e9d0227d652d95 220 Gene3D G3DSA:3.30.1330.200 40 195 3.8E-43 T 11-10-2018 IPR038592 CheD-like superfamily AMK58_27305 1fa4d02a20b24f6855e9d0227d652d95 220 SUPERFAMILY SSF64438 41 187 5.4E-43 T 11-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic AMK58_27305 1fa4d02a20b24f6855e9d0227d652d95 220 Hamap MF_01440 Chemoreceptor glutamine deamidase CheD [cheD]. 37 189 26.878 T 11-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 AMK58_06420 ed69ec9dd85a3303b044dfa386801653 503 PRINTS PR00095 Anthranilate synthase component I signature 427 441 1.4E-22 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMK58_06420 ed69ec9dd85a3303b044dfa386801653 503 PRINTS PR00095 Anthranilate synthase component I signature 442 456 1.4E-22 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMK58_06420 ed69ec9dd85a3303b044dfa386801653 503 PRINTS PR00095 Anthranilate synthase component I signature 333 346 1.4E-22 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMK58_06420 ed69ec9dd85a3303b044dfa386801653 503 PRINTS PR00095 Anthranilate synthase component I signature 347 360 1.4E-22 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMK58_06420 ed69ec9dd85a3303b044dfa386801653 503 SUPERFAMILY SSF56322 19 493 2.62E-153 T 11-10-2018 IPR005801 ADC synthase GO:0009058 AMK58_06420 ed69ec9dd85a3303b044dfa386801653 503 Pfam PF04715 Anthranilate synthase component I, N terminal region 29 176 9.3E-30 T 11-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMK58_06420 ed69ec9dd85a3303b044dfa386801653 503 Pfam PF00425 chorismate binding enzyme 232 485 2.9E-98 T 11-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal AMK58_06420 ed69ec9dd85a3303b044dfa386801653 503 Gene3D G3DSA:3.60.120.10 1 501 1.9E-175 T 11-10-2018 IPR005801 ADC synthase GO:0009058 AMK58_06420 ed69ec9dd85a3303b044dfa386801653 503 TIGRFAM TIGR00564 trpE_most: anthranilate synthase component I 29 493 9.0E-172 T 11-10-2018 IPR005256 Anthranilate synthase component I, PabB-like GO:0000162|GO:0004049 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMK58_25800 fa537cad987c6edc71124aecd429856c 244 SMART SM00382 38 221 1.3E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_25800 fa537cad987c6edc71124aecd429856c 244 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 225 243 1.3E-4 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AMK58_25800 fa537cad987c6edc71124aecd429856c 244 Gene3D G3DSA:3.40.50.300 9 244 9.8E-65 T 11-10-2018 AMK58_25800 fa537cad987c6edc71124aecd429856c 244 SUPERFAMILY SSF52540 13 242 4.9E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_25800 fa537cad987c6edc71124aecd429856c 244 Pfam PF00005 ABC transporter 29 172 2.1E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_25800 fa537cad987c6edc71124aecd429856c 244 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_18160 148c54eedd6996dfff8cb482025e01fc 318 SUPERFAMILY SSF103481 200 300 1.7E-11 T 11-10-2018 AMK58_18160 148c54eedd6996dfff8cb482025e01fc 318 Pfam PF00892 EamA-like transporter family 12 146 5.8E-24 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_18160 148c54eedd6996dfff8cb482025e01fc 318 Pfam PF00892 EamA-like transporter family 160 296 7.9E-19 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_18160 148c54eedd6996dfff8cb482025e01fc 318 SUPERFAMILY SSF103481 45 148 4.84E-17 T 11-10-2018 AMK58_02460 c09c412d7b17b7276aae9be0010d7b7c 509 SUPERFAMILY SSF53167 20 509 2.02E-144 T 11-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 AMK58_02460 c09c412d7b17b7276aae9be0010d7b7c 509 Gene3D G3DSA:3.30.1730.10 17 182 2.7E-48 T 11-10-2018 IPR037109 AMP nucleoside phosphorylase, N-terminal domain superfamily KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 AMK58_02460 c09c412d7b17b7276aae9be0010d7b7c 509 TIGRFAM TIGR01717 AMP-nucleosdse: AMP nucleosidase 23 509 6.8E-193 T 11-10-2018 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 AMK58_02460 c09c412d7b17b7276aae9be0010d7b7c 509 Hamap MF_01932 AMP nucleosidase [amn]. 15 509 60.492 T 11-10-2018 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 AMK58_02460 c09c412d7b17b7276aae9be0010d7b7c 509 Pfam PF01048 Phosphorylase superfamily 286 456 6.0E-14 T 11-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AMK58_02460 c09c412d7b17b7276aae9be0010d7b7c 509 Pfam PF10423 Bacterial AMP nucleoside phosphorylase N-terminus 24 175 3.7E-51 T 11-10-2018 IPR018953 AMP nucleoside phosphorylase, N-terminal KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 AMK58_02460 c09c412d7b17b7276aae9be0010d7b7c 509 Gene3D G3DSA:3.40.50.1580 184 509 3.4E-98 T 11-10-2018 AMK58_16895 5a790c49372410a1e343af7afe03b5ca 201 SUPERFAMILY SSF54719 89 199 4.45E-45 T 11-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMK58_16895 5a790c49372410a1e343af7afe03b5ca 201 Gene3D G3DSA:2.40.500.20 89 201 1.9E-43 T 11-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMK58_16895 5a790c49372410a1e343af7afe03b5ca 201 Gene3D G3DSA:1.10.287.990 20 86 1.6E-25 T 11-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMK58_16895 5a790c49372410a1e343af7afe03b5ca 201 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 3 87 1.2E-31 T 11-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMK58_16895 5a790c49372410a1e343af7afe03b5ca 201 PRINTS PR01703 Manganese superoxide dismutase signature 159 171 6.1E-25 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMK58_16895 5a790c49372410a1e343af7afe03b5ca 201 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 6.1E-25 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMK58_16895 5a790c49372410a1e343af7afe03b5ca 201 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 6.1E-25 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMK58_16895 5a790c49372410a1e343af7afe03b5ca 201 PRINTS PR01703 Manganese superoxide dismutase signature 123 131 6.1E-25 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMK58_16895 5a790c49372410a1e343af7afe03b5ca 201 PRINTS PR01703 Manganese superoxide dismutase signature 70 83 6.1E-25 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMK58_16895 5a790c49372410a1e343af7afe03b5ca 201 PIRSF PIRSF000349 1 201 4.7E-84 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMK58_16895 5a790c49372410a1e343af7afe03b5ca 201 SUPERFAMILY SSF46609 1 87 9.95E-36 T 11-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMK58_16895 5a790c49372410a1e343af7afe03b5ca 201 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 161 168 - T 11-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMK58_16895 5a790c49372410a1e343af7afe03b5ca 201 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 96 195 3.3E-37 T 11-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMK58_23410 3a32467f67f3e89c9c7230902fe6fbb5 286 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 205 222 - T 11-10-2018 IPR000540 Flagellar motor protein MotA, conserved site AMK58_23410 3a32467f67f3e89c9c7230902fe6fbb5 286 Pfam PF01618 MotA/TolQ/ExbB proton channel family 138 238 4.7E-13 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel AMK58_23410 3a32467f67f3e89c9c7230902fe6fbb5 286 TIGRFAM TIGR03818 MotA1: flagellar motor stator protein MotA 1 280 1.3E-110 T 11-10-2018 IPR022522 Flagellar motor stator, MotA AMK58_18120 71964397fd2ca37612c1cb736ca30c47 326 ProSitePatterns PS00211 ABC transporters family signature. 158 172 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_18120 71964397fd2ca37612c1cb736ca30c47 326 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 237 321 3.2E-22 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMK58_18120 71964397fd2ca37612c1cb736ca30c47 326 Gene3D G3DSA:3.40.50.300 6 326 2.1E-96 T 11-10-2018 AMK58_18120 71964397fd2ca37612c1cb736ca30c47 326 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 237 302 3.1E-18 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMK58_18120 71964397fd2ca37612c1cb736ca30c47 326 Pfam PF00005 ABC transporter 34 185 2.0E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_18120 71964397fd2ca37612c1cb736ca30c47 326 SUPERFAMILY SSF52540 9 256 2.2E-72 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_18120 71964397fd2ca37612c1cb736ca30c47 326 SMART SM00382 43 235 4.6E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_06110 31f72208de56daf55359f072ae80ce37 122 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 24 121 9.5E-42 T 11-10-2018 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06110 31f72208de56daf55359f072ae80ce37 122 Gene3D G3DSA:1.20.58.1610 1 122 3.3E-47 T 11-10-2018 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06110 31f72208de56daf55359f072ae80ce37 122 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 5 122 20.638 T 11-10-2018 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 AMK58_05215 7cb1a9ed47e3ab4ed540f58c128f4804 160 Pfam PF04073 Aminoacyl-tRNA editing domain 30 147 2.5E-30 T 11-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AMK58_05215 7cb1a9ed47e3ab4ed540f58c128f4804 160 SUPERFAMILY SSF55826 9 154 2.09E-38 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 AMK58_05215 7cb1a9ed47e3ab4ed540f58c128f4804 160 Gene3D G3DSA:3.90.960.10 3 160 6.5E-47 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 AMK58_00675 031103a1233b479f1da6f0c95c0ced8a 170 Gene3D G3DSA:3.40.630.30 19 169 1.7E-32 T 11-10-2018 AMK58_00675 031103a1233b479f1da6f0c95c0ced8a 170 Pfam PF00583 Acetyltransferase (GNAT) family 57 141 2.3E-12 T 11-10-2018 IPR000182 GNAT domain AMK58_00675 031103a1233b479f1da6f0c95c0ced8a 170 SUPERFAMILY SSF55729 11 151 2.44E-25 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_09080 01bc5765ff94bae9e9bff4249c8f5f0b 346 Gene3D G3DSA:1.10.287.950 4 108 6.0E-19 T 11-10-2018 AMK58_09080 01bc5765ff94bae9e9bff4249c8f5f0b 346 Gene3D G3DSA:3.30.450.20 123 247 9.9E-9 T 11-10-2018 AMK58_09080 01bc5765ff94bae9e9bff4249c8f5f0b 346 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 22 80 8.1E-15 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_09080 01bc5765ff94bae9e9bff4249c8f5f0b 346 SUPERFAMILY SSF58104 18 78 1.26E-19 T 11-10-2018 AMK58_09080 01bc5765ff94bae9e9bff4249c8f5f0b 346 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 24 51 4.6E-10 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_09080 01bc5765ff94bae9e9bff4249c8f5f0b 346 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 53 82 4.6E-10 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_15210 c34791255fd281344871339ad38bd3c4 332 Pfam PF02733 Dak1 domain 18 327 2.5E-109 T 11-10-2018 IPR004006 DhaK domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AMK58_15210 c34791255fd281344871339ad38bd3c4 332 SUPERFAMILY SSF82549 11 331 9.16E-109 T 11-10-2018 AMK58_15210 c34791255fd281344871339ad38bd3c4 332 Gene3D G3DSA:3.30.1180.20 185 332 5.9E-47 T 11-10-2018 AMK58_15210 c34791255fd281344871339ad38bd3c4 332 Gene3D G3DSA:3.40.50.10440 12 184 3.6E-51 T 11-10-2018 AMK58_18080 f5c14cc1d3b0f145bd649d90566d368b 336 SUPERFAMILY SSF51261 68 189 2.09E-28 T 11-10-2018 IPR011055 Duplicated hybrid motif AMK58_18080 f5c14cc1d3b0f145bd649d90566d368b 336 Pfam PF01551 Peptidase family M23 70 188 1.1E-22 T 11-10-2018 IPR016047 Peptidase M23 AMK58_18080 f5c14cc1d3b0f145bd649d90566d368b 336 Gene3D G3DSA:2.70.70.10 52 203 7.3E-33 T 11-10-2018 IPR011055 Duplicated hybrid motif AMK58_16980 e863279f0009f319a3c2f46e7fb01c4b 935 Gene3D G3DSA:3.90.199.10 37 516 1.4E-217 T 11-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 AMK58_16980 e863279f0009f319a3c2f46e7fb01c4b 935 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 12 891 0.0 T 11-10-2018 AMK58_16980 e863279f0009f319a3c2f46e7fb01c4b 935 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 533 580 1.1E-13 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMK58_16980 e863279f0009f319a3c2f46e7fb01c4b 935 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 793 840 4.3E-12 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMK58_16980 e863279f0009f319a3c2f46e7fb01c4b 935 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 691 736 5.0E-12 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMK58_16980 e863279f0009f319a3c2f46e7fb01c4b 935 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 643 688 4.4E-8 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMK58_16980 e863279f0009f319a3c2f46e7fb01c4b 935 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 845 890 2.7E-10 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMK58_16980 e863279f0009f319a3c2f46e7fb01c4b 935 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 585 632 4.5E-4 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMK58_16980 e863279f0009f319a3c2f46e7fb01c4b 935 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 9 892 23.654 T 11-10-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMK58_16980 e863279f0009f319a3c2f46e7fb01c4b 935 SUPERFAMILY SSF101904 528 897 2.22E-98 T 11-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal AMK58_16980 e863279f0009f319a3c2f46e7fb01c4b 935 Gene3D G3DSA:1.10.268.10 373 488 1.4E-217 T 11-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AMK58_16980 e863279f0009f319a3c2f46e7fb01c4b 935 Gene3D G3DSA:2.120.10.90 767 892 7.6E-30 T 11-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal AMK58_16980 e863279f0009f319a3c2f46e7fb01c4b 935 SMART SM00434 15 494 7.0E-274 T 11-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMK58_16980 e863279f0009f319a3c2f46e7fb01c4b 935 Gene3D G3DSA:2.120.10.90 525 760 2.0E-77 T 11-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal AMK58_16980 e863279f0009f319a3c2f46e7fb01c4b 935 Gene3D G3DSA:3.30.1360.40 240 336 1.4E-217 T 11-10-2018 AMK58_16980 e863279f0009f319a3c2f46e7fb01c4b 935 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 36 492 1.0E-149 T 11-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMK58_16980 e863279f0009f319a3c2f46e7fb01c4b 935 SUPERFAMILY SSF56719 34 516 2.88E-176 T 11-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AMK58_03245 1488787bd20b268485bb09178a2f49e7 895 Pfam PF10139 Putative bacterial virulence factor 22 882 6.0E-298 T 11-10-2018 IPR017030 Virulence effector, SrfC AMK58_03245 1488787bd20b268485bb09178a2f49e7 895 PIRSF PIRSF034586 2 890 1.5E-205 T 11-10-2018 IPR017030 Virulence effector, SrfC AMK58_04700 f51181942f82feef0271d99182532291 393 PIRSF PIRSF000390 12 385 9.0E-92 T 11-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AMK58_04700 f51181942f82feef0271d99182532291 393 Gene3D G3DSA:3.40.640.10 5 255 5.3E-75 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_04700 f51181942f82feef0271d99182532291 393 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 23 378 4.9E-92 T 11-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AMK58_04700 f51181942f82feef0271d99182532291 393 Gene3D G3DSA:3.90.1150.10 256 384 3.1E-22 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_04700 f51181942f82feef0271d99182532291 393 SUPERFAMILY SSF53383 16 381 1.9E-86 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_07640 48ed9a19cd5b1259a7e4353d71cf9232 392 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 7 385 1.1E-106 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMK58_07640 48ed9a19cd5b1259a7e4353d71cf9232 392 TIGRFAM TIGR01324 cysta_beta_ly_B: cystathionine beta-lyase 8 387 3.8E-143 T 11-10-2018 IPR006233 Cystathionine beta-lyase, bacterial GO:0004121|GO:0005737|GO:0006520 KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 AMK58_07640 48ed9a19cd5b1259a7e4353d71cf9232 392 SUPERFAMILY SSF53383 23 386 5.09E-96 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_07640 48ed9a19cd5b1259a7e4353d71cf9232 392 Gene3D G3DSA:3.90.1150.10 258 389 1.1E-36 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_07640 48ed9a19cd5b1259a7e4353d71cf9232 392 PIRSF PIRSF001434 1 389 1.0E-122 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMK58_07640 48ed9a19cd5b1259a7e4353d71cf9232 392 Gene3D G3DSA:3.40.640.10 1 257 3.3E-73 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_10670 7261470e5715a203d5fb97664c061533 257 SMART SM00382 27 208 1.9E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_10670 7261470e5715a203d5fb97664c061533 257 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_10670 7261470e5715a203d5fb97664c061533 257 SUPERFAMILY SSF52540 3 219 3.27E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_10670 7261470e5715a203d5fb97664c061533 257 Gene3D G3DSA:3.40.50.300 3 253 1.7E-62 T 11-10-2018 AMK58_10670 7261470e5715a203d5fb97664c061533 257 Pfam PF00005 ABC transporter 18 157 8.2E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_03025 dfd5ac251bd34f7c6e5505d6e31af1f6 175 ProSitePatterns PS00938 Initiation factor 3 signature. 65 78 - T 11-10-2018 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 AMK58_03025 dfd5ac251bd34f7c6e5505d6e31af1f6 175 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 7 175 30.079 T 11-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 AMK58_03025 dfd5ac251bd34f7c6e5505d6e31af1f6 175 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 14 175 8.4E-69 T 11-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 AMK58_03025 dfd5ac251bd34f7c6e5505d6e31af1f6 175 SUPERFAMILY SSF54364 11 85 1.44E-28 T 11-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 AMK58_03025 dfd5ac251bd34f7c6e5505d6e31af1f6 175 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 90 174 1.1E-40 T 11-10-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 AMK58_03025 dfd5ac251bd34f7c6e5505d6e31af1f6 175 Gene3D G3DSA:3.10.20.80 9 82 5.8E-31 T 11-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 AMK58_03025 dfd5ac251bd34f7c6e5505d6e31af1f6 175 SUPERFAMILY SSF55200 90 174 3.4E-35 T 11-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 AMK58_03025 dfd5ac251bd34f7c6e5505d6e31af1f6 175 Gene3D G3DSA:3.30.110.10 83 175 1.7E-40 T 11-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 AMK58_03025 dfd5ac251bd34f7c6e5505d6e31af1f6 175 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 14 83 4.6E-31 T 11-10-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 AMK58_06515 8eb346ebc276119b1115c925ee19aa3c 176 SUPERFAMILY SSF52833 2 175 8.67E-37 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_06515 8eb346ebc276119b1115c925ee19aa3c 176 Pfam PF08534 Redoxin 29 151 4.0E-28 T 11-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 AMK58_06515 8eb346ebc276119b1115c925ee19aa3c 176 Gene3D G3DSA:3.40.30.10 1 176 1.2E-61 T 11-10-2018 AMK58_27920 6470d8988f4d75068bcc4d7383a49c58 140 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 54 123 1.1E-18 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain AMK58_27920 6470d8988f4d75068bcc4d7383a49c58 140 SUPERFAMILY SSF53850 8 124 8.32E-32 T 11-10-2018 AMK58_27920 6470d8988f4d75068bcc4d7383a49c58 140 Gene3D G3DSA:3.40.190.10 12 130 6.2E-42 T 11-10-2018 AMK58_23280 c810d663348a80ce825b2a08d704bef4 143 Pfam PF05239 PRC-barrel domain 66 128 8.2E-9 T 11-10-2018 IPR027275 PRC-barrel domain AMK58_23280 c810d663348a80ce825b2a08d704bef4 143 Gene3D G3DSA:2.30.30.240 58 139 5.4E-15 T 11-10-2018 AMK58_23280 c810d663348a80ce825b2a08d704bef4 143 SUPERFAMILY SSF50346 63 124 2.16E-10 T 11-10-2018 IPR011033 PRC-barrel-like superfamily AMK58_26110 a606b357cf4f8eec821dc57a7a9a9762 91 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 6 75 1.5E-7 T 11-10-2018 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 AMK58_14100 cf7b4a1a3c32c98cb9615d23b22019b6 415 Pfam PF02515 CoA-transferase family III 8 373 5.6E-109 T 11-10-2018 IPR003673 CoA-transferase family III GO:0003824 AMK58_14100 cf7b4a1a3c32c98cb9615d23b22019b6 415 Gene3D G3DSA:3.30.1540.10 232 325 1.2E-122 T 11-10-2018 AMK58_14100 cf7b4a1a3c32c98cb9615d23b22019b6 415 Gene3D G3DSA:3.40.50.10540 8 390 1.2E-122 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily AMK58_14100 cf7b4a1a3c32c98cb9615d23b22019b6 415 SUPERFAMILY SSF89796 5 396 1.44E-120 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily AMK58_01095 0642b4767ccd53bd414c66916e841436 418 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 193 377 3.9E-66 T 11-10-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 AMK58_01095 0642b4767ccd53bd414c66916e841436 418 Pfam PF02441 Flavoprotein 10 182 2.3E-44 T 11-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 AMK58_01095 0642b4767ccd53bd414c66916e841436 418 Gene3D G3DSA:3.40.50.10300 190 407 8.3E-73 T 11-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 AMK58_01095 0642b4767ccd53bd414c66916e841436 418 SUPERFAMILY SSF102645 191 406 5.75E-73 T 11-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 AMK58_01095 0642b4767ccd53bd414c66916e841436 418 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 8 401 1.2E-121 T 11-10-2018 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|MetaCyc: PWY-7851 AMK58_01095 0642b4767ccd53bd414c66916e841436 418 SUPERFAMILY SSF52507 6 184 4.58E-61 T 11-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 AMK58_01095 0642b4767ccd53bd414c66916e841436 418 Gene3D G3DSA:3.40.50.1950 3 189 3.6E-60 T 11-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 AMK58_27710 9a29e7791c39e1296fb330ebd4684522 521 PIRSF PIRSF002741 6 518 1.4E-87 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMK58_27710 9a29e7791c39e1296fb330ebd4684522 521 Gene3D G3DSA:3.40.190.10 40 504 1.4E-108 T 11-10-2018 AMK58_27710 9a29e7791c39e1296fb330ebd4684522 521 Gene3D G3DSA:3.90.76.10 62 180 1.4E-108 T 11-10-2018 AMK58_27710 9a29e7791c39e1296fb330ebd4684522 521 Gene3D G3DSA:3.10.105.10 281 493 1.4E-108 T 11-10-2018 AMK58_27710 9a29e7791c39e1296fb330ebd4684522 521 SUPERFAMILY SSF53850 24 516 2.17E-114 T 11-10-2018 AMK58_27710 9a29e7791c39e1296fb330ebd4684522 521 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 73 441 2.1E-72 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain AMK58_12155 ab9eeecdb0b0177ee03a15c8f177656e 69 SMART SM00357 3 69 3.8E-26 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 AMK58_12155 ab9eeecdb0b0177ee03a15c8f177656e 69 SUPERFAMILY SSF50249 1 68 2.14E-23 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_12155 ab9eeecdb0b0177ee03a15c8f177656e 69 PIRSF PIRSF002599 1 69 4.3E-22 T 11-10-2018 IPR012156 Cold shock, CspA GO:0003676 AMK58_12155 ab9eeecdb0b0177ee03a15c8f177656e 69 PRINTS PR00050 Cold shock protein signature 4 19 3.4E-13 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_12155 ab9eeecdb0b0177ee03a15c8f177656e 69 PRINTS PR00050 Cold shock protein signature 40 58 3.4E-13 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_12155 ab9eeecdb0b0177ee03a15c8f177656e 69 PRINTS PR00050 Cold shock protein signature 25 34 3.4E-13 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_12155 ab9eeecdb0b0177ee03a15c8f177656e 69 Pfam PF00313 'Cold-shock' DNA-binding domain 4 67 1.5E-24 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_12155 ab9eeecdb0b0177ee03a15c8f177656e 69 Gene3D G3DSA:2.40.50.140 3 67 4.4E-25 T 11-10-2018 AMK58_12155 ab9eeecdb0b0177ee03a15c8f177656e 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 11-10-2018 IPR019844 Cold-shock conserved site AMK58_15935 4ff13fbbfdb2d89273eece66081ec53a 631 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_15935 4ff13fbbfdb2d89273eece66081ec53a 631 SUPERFAMILY SSF52540 2 236 1.99E-46 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_15935 4ff13fbbfdb2d89273eece66081ec53a 631 Pfam PF12848 ABC transporter 214 293 2.1E-26 T 11-10-2018 IPR032781 ABC-transporter extension domain AMK58_15935 4ff13fbbfdb2d89273eece66081ec53a 631 Gene3D G3DSA:3.40.50.300 272 544 3.5E-55 T 11-10-2018 AMK58_15935 4ff13fbbfdb2d89273eece66081ec53a 631 Gene3D G3DSA:3.40.50.300 1 258 4.0E-58 T 11-10-2018 AMK58_15935 4ff13fbbfdb2d89273eece66081ec53a 631 SUPERFAMILY SSF52540 289 510 1.45E-45 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_15935 4ff13fbbfdb2d89273eece66081ec53a 631 ProSitePatterns PS00211 ABC transporters family signature. 428 442 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_15935 4ff13fbbfdb2d89273eece66081ec53a 631 Pfam PF16326 ABC transporter C-terminal domain 557 617 4.1E-9 T 11-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 AMK58_15935 4ff13fbbfdb2d89273eece66081ec53a 631 Pfam PF00005 ABC transporter 325 456 2.0E-20 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_15935 4ff13fbbfdb2d89273eece66081ec53a 631 Pfam PF00005 ABC transporter 21 175 8.1E-23 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_15935 4ff13fbbfdb2d89273eece66081ec53a 631 SMART SM00382 26 220 1.3E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_15935 4ff13fbbfdb2d89273eece66081ec53a 631 SMART SM00382 334 501 4.7E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_24655 b4ae3eb210431163cb833309ab969038 344 SUPERFAMILY SSF52540 72 333 4.35E-47 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_24655 b4ae3eb210431163cb833309ab969038 344 Pfam PF13614 AAA domain 71 255 1.7E-40 T 11-10-2018 IPR025669 AAA domain AMK58_24655 b4ae3eb210431163cb833309ab969038 344 Gene3D G3DSA:1.10.260.40 1 60 3.6E-5 T 11-10-2018 AMK58_24655 b4ae3eb210431163cb833309ab969038 344 Gene3D G3DSA:3.40.50.300 65 341 7.8E-63 T 11-10-2018 AMK58_12020 c013da9fb97b5b9ef586e08ccc14380b 218 Pfam PF03942 DTW domain 2 190 1.2E-31 T 11-10-2018 IPR005636 DTW AMK58_12020 c013da9fb97b5b9ef586e08ccc14380b 218 SMART SM01144 1 196 2.1E-32 T 11-10-2018 IPR005636 DTW AMK58_09500 8213da7266f4c0b987eabc776b0c0f7d 284 Gene3D G3DSA:1.10.287.70 17 81 9.3E-24 T 11-10-2018 AMK58_09500 8213da7266f4c0b987eabc776b0c0f7d 284 Gene3D G3DSA:1.20.120.80 84 277 4.1E-76 T 11-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_09500 8213da7266f4c0b987eabc776b0c0f7d 284 Pfam PF00510 Cytochrome c oxidase subunit III 19 277 2.3E-95 T 11-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_09500 8213da7266f4c0b987eabc776b0c0f7d 284 SUPERFAMILY SSF81452 18 276 1.78E-96 T 11-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_17490 587a717a53d524fbb22423b7ff2651a9 369 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 206 365 5.0E-44 T 11-10-2018 IPR000160 GGDEF domain AMK58_17490 587a717a53d524fbb22423b7ff2651a9 369 Gene3D G3DSA:3.30.70.270 206 367 5.3E-60 T 11-10-2018 AMK58_17490 587a717a53d524fbb22423b7ff2651a9 369 SMART SM00267 197 367 1.2E-62 T 11-10-2018 IPR000160 GGDEF domain AMK58_17490 587a717a53d524fbb22423b7ff2651a9 369 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 81 204 4.0E-19 T 11-10-2018 IPR000014 PAS domain AMK58_17490 587a717a53d524fbb22423b7ff2651a9 369 SMART SM00091 84 151 4.1E-8 T 11-10-2018 IPR000014 PAS domain AMK58_17490 587a717a53d524fbb22423b7ff2651a9 369 Gene3D G3DSA:3.30.450.20 82 205 2.1E-22 T 11-10-2018 AMK58_17490 587a717a53d524fbb22423b7ff2651a9 369 Pfam PF00990 Diguanylate cyclase, GGDEF domain 209 363 1.7E-46 T 11-10-2018 IPR000160 GGDEF domain AMK58_17490 587a717a53d524fbb22423b7ff2651a9 369 SUPERFAMILY SSF55785 72 195 1.35E-21 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_17490 587a717a53d524fbb22423b7ff2651a9 369 Pfam PF00989 PAS fold 85 191 1.2E-13 T 11-10-2018 IPR013767 PAS fold GO:0006355 AMK58_17490 587a717a53d524fbb22423b7ff2651a9 369 SUPERFAMILY SSF55073 213 365 1.02E-50 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_09940 31e8f322bf181c2e946f7803c0df5198 263 Pfam PF13490 Putative zinc-finger 12 36 4.6E-5 T 11-10-2018 IPR027383 Putative zinc-finger AMK58_01660 a8d7acfb28608709b210649b33092764 242 SUPERFAMILY SSF51735 5 240 6.57E-38 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_01660 a8d7acfb28608709b210649b33092764 242 Pfam PF00106 short chain dehydrogenase 9 186 5.8E-25 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_01660 a8d7acfb28608709b210649b33092764 242 Gene3D G3DSA:3.40.50.720 8 241 1.5E-45 T 11-10-2018 AMK58_01660 a8d7acfb28608709b210649b33092764 242 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMK58_01660 a8d7acfb28608709b210649b33092764 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 7.8E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_01660 a8d7acfb28608709b210649b33092764 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 7.8E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_01660 a8d7acfb28608709b210649b33092764 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 7.8E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_01660 a8d7acfb28608709b210649b33092764 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 7.8E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_20265 19d5196cfb914d4f02c573e49d82f662 400 Pfam PF02515 CoA-transferase family III 5 376 5.6E-138 T 11-10-2018 IPR003673 CoA-transferase family III GO:0003824 AMK58_20265 19d5196cfb914d4f02c573e49d82f662 400 SUPERFAMILY SSF89796 2 400 2.09E-151 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily AMK58_20265 19d5196cfb914d4f02c573e49d82f662 400 Gene3D G3DSA:3.40.50.10540 4 394 2.5E-149 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily AMK58_20265 19d5196cfb914d4f02c573e49d82f662 400 Gene3D G3DSA:3.30.1540.10 236 327 2.5E-149 T 11-10-2018 AMK58_22945 562dc2ce82b252e407afef12df047acd 453 Gene3D G3DSA:3.90.1150.10 38 444 7.2E-152 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_22945 562dc2ce82b252e407afef12df047acd 453 Pfam PF00202 Aminotransferase class-III 40 449 2.5E-92 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMK58_22945 562dc2ce82b252e407afef12df047acd 453 SUPERFAMILY SSF53383 25 450 6.6E-117 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_22945 562dc2ce82b252e407afef12df047acd 453 Gene3D G3DSA:3.40.640.10 75 355 7.2E-152 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_22945 562dc2ce82b252e407afef12df047acd 453 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 261 298 - T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMK58_13805 d6e0a1e63b3e303a1392c9be5985c7ff 122 Pfam PF02021 Uncharacterised protein family UPF0102 18 107 1.7E-21 T 11-10-2018 IPR003509 Uncharacterised protein family UPF0102 AMK58_13805 d6e0a1e63b3e303a1392c9be5985c7ff 122 Hamap MF_00048 UPF0102 protein YraN [yraN]. 11 120 19.042 T 11-10-2018 IPR003509 Uncharacterised protein family UPF0102 AMK58_13805 d6e0a1e63b3e303a1392c9be5985c7ff 122 Gene3D G3DSA:3.40.1350.10 17 122 5.1E-32 T 11-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 AMK58_13805 d6e0a1e63b3e303a1392c9be5985c7ff 122 SUPERFAMILY SSF52980 14 120 2.68E-24 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AMK58_16180 04a9872397b15165a371f7520b57c8a6 318 Gene3D G3DSA:1.10.3720.10 90 314 3.2E-25 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_16180 04a9872397b15165a371f7520b57c8a6 318 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 120 318 4.6E-34 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_16180 04a9872397b15165a371f7520b57c8a6 318 SUPERFAMILY SSF161098 97 303 2.88E-18 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_22340 fcac81b8bc80024d27d17f1b69cdf247 298 SUPERFAMILY SSF53223 5 98 2.13E-33 T 11-10-2018 AMK58_22340 fcac81b8bc80024d27d17f1b69cdf247 298 SUPERFAMILY SSF51735 114 209 8.97E-8 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_22340 fcac81b8bc80024d27d17f1b69cdf247 298 Pfam PF09176 Methylene-tetrahydromethanopterin dehydrogenase, N-terminal 19 98 5.6E-34 T 11-10-2018 IPR015259 Methylene-tetrahydromethanopterin dehydrogenase, N-terminal AMK58_22340 fcac81b8bc80024d27d17f1b69cdf247 298 Gene3D G3DSA:3.40.50.720 107 264 1.7E-98 T 11-10-2018 AMK58_22340 fcac81b8bc80024d27d17f1b69cdf247 298 Pfam PF05368 NmrA-like family 130 218 1.2E-4 T 11-10-2018 IPR008030 NmrA-like domain Reactome: R-HSA-70635 AMK58_22340 fcac81b8bc80024d27d17f1b69cdf247 298 Gene3D G3DSA:3.40.50.10280 6 293 1.7E-98 T 11-10-2018 IPR037089 Methylene-tetrahydromethanopterin dehydrogenase, N-terminal domain superfamily AMK58_01960 0062b059f8bde9a4db0cd50be67b3653 419 Gene3D G3DSA:1.10.287.950 114 375 2.9E-29 T 11-10-2018 AMK58_01960 0062b059f8bde9a4db0cd50be67b3653 419 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 235 353 4.8E-22 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_01960 0062b059f8bde9a4db0cd50be67b3653 419 SMART SM00283 159 402 1.5E-4 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_01960 0062b059f8bde9a4db0cd50be67b3653 419 SUPERFAMILY SSF58104 82 347 2.22E-32 T 11-10-2018 AMK58_12930 762ec01c451fe2a68b44177785c95b65 140 Gene3D G3DSA:3.30.750.24 7 138 4.8E-23 T 11-10-2018 IPR036513 STAS domain superfamily AMK58_12930 762ec01c451fe2a68b44177785c95b65 140 SUPERFAMILY SSF52091 8 137 2.94E-14 T 11-10-2018 IPR036513 STAS domain superfamily AMK58_12930 762ec01c451fe2a68b44177785c95b65 140 Pfam PF01740 STAS domain 13 125 8.0E-8 T 11-10-2018 IPR002645 STAS domain AMK58_09930 1a3b397d5ee8306cbe71d6f30f4ad9d4 202 PIRSF PIRSF033239 1 200 1.1E-45 T 11-10-2018 IPR010331 Exopolysaccharide synthesis, ExoD AMK58_09930 1a3b397d5ee8306cbe71d6f30f4ad9d4 202 Pfam PF06055 Exopolysaccharide synthesis, ExoD 10 187 1.2E-52 T 11-10-2018 IPR010331 Exopolysaccharide synthesis, ExoD AMK58_02905 34031c2ad43342d3c4c70435a11725c2 460 SUPERFAMILY SSF56349 154 270 2.3E-8 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMK58_02905 34031c2ad43342d3c4c70435a11725c2 460 Gene3D G3DSA:1.10.443.10 132 285 1.7E-6 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMK58_16915 887597e43843c7aec044ae27b4e9e204 284 SUPERFAMILY SSF48576 7 283 5.75E-56 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily AMK58_16915 887597e43843c7aec044ae27b4e9e204 284 Gene3D G3DSA:1.10.600.10 2 260 5.7E-35 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily AMK58_16915 887597e43843c7aec044ae27b4e9e204 284 Pfam PF00494 Squalene/phytoene synthase 15 267 3.0E-52 T 11-10-2018 AMK58_19685 67746f6fb6a1036cf5a4bb2b7a2db0ee 223 Pfam PF13717 zinc-ribbon domain 1 35 6.8E-15 T 11-10-2018 IPR011723 Zinc finger/thioredoxin putative AMK58_19685 67746f6fb6a1036cf5a4bb2b7a2db0ee 223 Pfam PF11906 Protein of unknown function (DUF3426) 90 183 2.0E-6 T 11-10-2018 IPR021834 Protein of unknown function DUF3426 AMK58_19685 67746f6fb6a1036cf5a4bb2b7a2db0ee 223 TIGRFAM TIGR02098 MJ0042_CXXC: MJ0042 family finger-like domain 1 35 9.4E-15 T 11-10-2018 IPR011723 Zinc finger/thioredoxin putative AMK58_00405 891764cf8d4359f899423c1ccffedb5f 214 Pfam PF01121 Dephospho-CoA kinase 3 174 9.4E-39 T 11-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 AMK58_00405 891764cf8d4359f899423c1ccffedb5f 214 Gene3D G3DSA:3.40.50.300 1 201 6.8E-59 T 11-10-2018 AMK58_00405 891764cf8d4359f899423c1ccffedb5f 214 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 1 196 25.588 T 11-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 AMK58_00405 891764cf8d4359f899423c1ccffedb5f 214 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 3 175 1.7E-33 T 11-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 AMK58_00405 891764cf8d4359f899423c1ccffedb5f 214 SUPERFAMILY SSF52540 2 194 8.1E-31 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_17120 ec9cfa396f9ee1dbd7d40dc48aba6de0 519 SUPERFAMILY SSF52540 346 482 2.31E-18 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_17120 ec9cfa396f9ee1dbd7d40dc48aba6de0 519 Pfam PF13671 AAA domain 348 488 1.3E-21 T 11-10-2018 AMK58_17120 ec9cfa396f9ee1dbd7d40dc48aba6de0 519 Gene3D G3DSA:3.40.50.300 344 519 2.7E-30 T 11-10-2018 AMK58_17120 ec9cfa396f9ee1dbd7d40dc48aba6de0 519 SUPERFAMILY SSF56112 7 311 1.25E-20 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily AMK58_17120 ec9cfa396f9ee1dbd7d40dc48aba6de0 519 Pfam PF01636 Phosphotransferase enzyme family 130 293 1.9E-9 T 11-10-2018 IPR002575 Aminoglycoside phosphotransferase AMK58_27390 1381a63193f732c77224d576ad8ee02e 294 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 15 260 2.3E-72 T 11-10-2018 IPR013658 SMP-30/Gluconolactonase/LRE-like region AMK58_27390 1381a63193f732c77224d576ad8ee02e 294 SUPERFAMILY SSF63829 3 286 2.29E-65 T 11-10-2018 AMK58_27390 1381a63193f732c77224d576ad8ee02e 294 Gene3D G3DSA:2.120.10.30 3 290 2.8E-92 T 11-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like AMK58_27390 1381a63193f732c77224d576ad8ee02e 294 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 16 33 1.1E-39 T 11-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMK58_27390 1381a63193f732c77224d576ad8ee02e 294 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 138 160 1.1E-39 T 11-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMK58_27390 1381a63193f732c77224d576ad8ee02e 294 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 242 260 1.1E-39 T 11-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMK58_27390 1381a63193f732c77224d576ad8ee02e 294 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 161 181 1.1E-39 T 11-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMK58_27390 1381a63193f732c77224d576ad8ee02e 294 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 97 118 1.1E-39 T 11-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMK58_27390 1381a63193f732c77224d576ad8ee02e 294 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 200 217 1.1E-39 T 11-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMK58_01965 5ade00aca14f6ecf23e9a81dc1934a75 255 Pfam PF00691 OmpA family 143 238 6.0E-26 T 11-10-2018 IPR006665 OmpA-like domain AMK58_01965 5ade00aca14f6ecf23e9a81dc1934a75 255 Pfam PF14346 Domain of unknown function (DUF4398) 23 117 7.5E-15 T 11-10-2018 IPR025511 Domain of unknown function DUF4398 AMK58_01965 5ade00aca14f6ecf23e9a81dc1934a75 255 PRINTS PR01021 OMPA domain signature 189 205 5.4E-10 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMK58_01965 5ade00aca14f6ecf23e9a81dc1934a75 255 PRINTS PR01021 OMPA domain signature 174 189 5.4E-10 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMK58_01965 5ade00aca14f6ecf23e9a81dc1934a75 255 PRINTS PR01021 OMPA domain signature 144 166 5.4E-10 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMK58_01965 5ade00aca14f6ecf23e9a81dc1934a75 255 SUPERFAMILY SSF103088 135 244 2.35E-38 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMK58_01965 5ade00aca14f6ecf23e9a81dc1934a75 255 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 189 206 1.3E-5 T 11-10-2018 AMK58_01965 5ade00aca14f6ecf23e9a81dc1934a75 255 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 207 226 1.3E-5 T 11-10-2018 AMK58_01965 5ade00aca14f6ecf23e9a81dc1934a75 255 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 227 247 1.3E-5 T 11-10-2018 AMK58_01965 5ade00aca14f6ecf23e9a81dc1934a75 255 Gene3D G3DSA:3.30.1330.60 108 249 5.9E-44 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMK58_18805 d4b4284aa6ae7cd31148a0fd318a4329 674 SMART SM00331 455 665 1.1E-9 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AMK58_18805 d4b4284aa6ae7cd31148a0fd318a4329 674 SUPERFAMILY SSF158472 281 328 1.12E-5 T 11-10-2018 AMK58_18805 d4b4284aa6ae7cd31148a0fd318a4329 674 Gene3D G3DSA:3.60.40.10 425 672 8.6E-40 T 11-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AMK58_18805 d4b4284aa6ae7cd31148a0fd318a4329 674 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 482 658 2.4E-22 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AMK58_18805 d4b4284aa6ae7cd31148a0fd318a4329 674 Gene3D G3DSA:1.10.8.500 283 332 7.2E-7 T 11-10-2018 AMK58_00500 47f49734a956096441064246f3d149ac 180 SUPERFAMILY SSF55729 11 171 2.45E-27 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_00500 47f49734a956096441064246f3d149ac 180 Pfam PF00583 Acetyltransferase (GNAT) family 50 145 1.4E-11 T 11-10-2018 IPR000182 GNAT domain AMK58_00500 47f49734a956096441064246f3d149ac 180 Gene3D G3DSA:3.40.630.30 7 174 4.7E-31 T 11-10-2018 AMK58_20360 85a4d768c6b48bb53481f95b96763693 142 Pfam PF01037 Lrp/AsnC ligand binding domain 68 136 2.6E-16 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMK58_20360 85a4d768c6b48bb53481f95b96763693 142 Pfam PF13404 AsnC-type helix-turn-helix domain 1 41 8.0E-12 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMK58_20360 85a4d768c6b48bb53481f95b96763693 142 SMART SM00344 1 107 3.9E-15 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMK58_20360 85a4d768c6b48bb53481f95b96763693 142 SUPERFAMILY SSF46785 1 55 1.54E-11 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_20360 85a4d768c6b48bb53481f95b96763693 142 Gene3D G3DSA:3.30.70.920 62 133 7.4E-18 T 11-10-2018 AMK58_20360 85a4d768c6b48bb53481f95b96763693 142 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 3.0E-7 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMK58_20360 85a4d768c6b48bb53481f95b96763693 142 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 3.0E-7 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMK58_20360 85a4d768c6b48bb53481f95b96763693 142 SUPERFAMILY SSF54909 63 139 2.68E-16 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel AMK58_20360 85a4d768c6b48bb53481f95b96763693 142 Gene3D G3DSA:1.10.10.10 1 53 1.3E-16 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_16110 273aaab05c9c07bd3ca38f9075d349ab 157 SUPERFAMILY SSF55961 1 143 2.02E-31 T 11-10-2018 AMK58_16110 273aaab05c9c07bd3ca38f9075d349ab 157 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 1 142 1.0E-24 T 11-10-2018 IPR019587 Polyketide cyclase/dehydrase AMK58_16110 273aaab05c9c07bd3ca38f9075d349ab 157 Gene3D G3DSA:3.30.530.20 1 144 1.0E-38 T 11-10-2018 IPR023393 START-like domain superfamily AMK58_03550 845fdec85332f4fb2c1994ec929e02f3 130 Pfam PF00034 Cytochrome c 33 129 4.7E-8 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_03550 845fdec85332f4fb2c1994ec929e02f3 130 SUPERFAMILY SSF46626 30 129 1.92E-28 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_03550 845fdec85332f4fb2c1994ec929e02f3 130 PRINTS PR00604 Class IA and IB cytochrome C signature 41 48 5.7E-12 T 11-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_03550 845fdec85332f4fb2c1994ec929e02f3 130 PRINTS PR00604 Class IA and IB cytochrome C signature 53 68 5.7E-12 T 11-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_03550 845fdec85332f4fb2c1994ec929e02f3 130 PRINTS PR00604 Class IA and IB cytochrome C signature 83 99 5.7E-12 T 11-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_03550 845fdec85332f4fb2c1994ec929e02f3 130 PRINTS PR00604 Class IA and IB cytochrome C signature 102 112 5.7E-12 T 11-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_03550 845fdec85332f4fb2c1994ec929e02f3 130 PRINTS PR00604 Class IA and IB cytochrome C signature 119 127 5.7E-12 T 11-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_03550 845fdec85332f4fb2c1994ec929e02f3 130 PRINTS PR00604 Class IA and IB cytochrome C signature 69 79 5.7E-12 T 11-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_03550 845fdec85332f4fb2c1994ec929e02f3 130 Gene3D G3DSA:1.10.760.10 11 127 2.3E-35 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_24825 c0c332ca8eab2397f22529b5a4725130 702 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 437 599 2.1E-28 T 11-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMK58_24825 c0c332ca8eab2397f22529b5a4725130 702 SUPERFAMILY SSF55073 433 620 2.67E-55 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_24825 c0c332ca8eab2397f22529b5a4725130 702 SMART SM00044 403 601 3.9E-15 T 11-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMK58_24825 c0c332ca8eab2397f22529b5a4725130 702 Gene3D G3DSA:1.20.1480.50 327 415 1.1E-5 T 11-10-2018 AMK58_24825 c0c332ca8eab2397f22529b5a4725130 702 Gene3D G3DSA:3.30.70.1230 429 631 2.6E-61 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_24825 c0c332ca8eab2397f22529b5a4725130 702 Gene3D G3DSA:3.30.450.20 193 326 2.1E-12 T 11-10-2018 AMK58_24825 c0c332ca8eab2397f22529b5a4725130 702 Pfam PF02743 Cache domain 25 323 9.7E-17 T 11-10-2018 IPR033479 Double Cache domain 1 AMK58_24825 c0c332ca8eab2397f22529b5a4725130 702 SMART SM00304 361 414 7.3E-4 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_12525 81c82b9fc24dbb02c9bdbf9f44b4086d 194 SUPERFAMILY SSF46565 99 189 2.49E-16 T 11-10-2018 IPR036869 Chaperone J-domain superfamily AMK58_12525 81c82b9fc24dbb02c9bdbf9f44b4086d 194 SMART SM00271 135 193 5.6E-11 T 11-10-2018 IPR001623 DnaJ domain AMK58_12525 81c82b9fc24dbb02c9bdbf9f44b4086d 194 Pfam PF00226 DnaJ domain 140 189 5.6E-12 T 11-10-2018 IPR001623 DnaJ domain AMK58_12525 81c82b9fc24dbb02c9bdbf9f44b4086d 194 Gene3D G3DSA:1.10.287.110 112 191 3.8E-13 T 11-10-2018 IPR036869 Chaperone J-domain superfamily AMK58_04365 54d3e3dc8876a73d6bd6c07194a28db7 266 PIRSF PIRSF006157 11 264 9.8E-87 T 11-10-2018 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type GO:0008270|GO:0016701|GO:0055114 AMK58_04365 54d3e3dc8876a73d6bd6c07194a28db7 266 SUPERFAMILY SSF53213 14 262 1.44E-84 T 11-10-2018 AMK58_04365 54d3e3dc8876a73d6bd6c07194a28db7 266 Gene3D G3DSA:3.40.830.10 4 263 1.9E-86 T 11-10-2018 AMK58_04365 54d3e3dc8876a73d6bd6c07194a28db7 266 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 17 262 3.1E-43 T 11-10-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 AMK58_06925 414014196c354d9dabf30c76acb5d793 400 Pfam PF07690 Major Facilitator Superfamily 21 347 1.7E-23 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMK58_06925 414014196c354d9dabf30c76acb5d793 400 SUPERFAMILY SSF103473 14 389 4.58E-40 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_06925 414014196c354d9dabf30c76acb5d793 400 Gene3D G3DSA:1.20.1250.20 13 391 1.0E-36 T 11-10-2018 AMK58_26965 e174f2877697da4c49e2dd2494c62ade 313 Gene3D G3DSA:1.10.10.10 9 93 1.5E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_26965 e174f2877697da4c49e2dd2494c62ade 313 SUPERFAMILY SSF46785 10 95 1.36E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_26965 e174f2877697da4c49e2dd2494c62ade 313 Gene3D G3DSA:3.40.190.290 99 305 1.6E-15 T 11-10-2018 AMK58_26965 e174f2877697da4c49e2dd2494c62ade 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 70 1.7E-14 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_26965 e174f2877697da4c49e2dd2494c62ade 313 Pfam PF03466 LysR substrate binding domain 95 299 4.3E-26 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_26965 e174f2877697da4c49e2dd2494c62ade 313 SUPERFAMILY SSF53850 93 300 2.02E-28 T 11-10-2018 AMK58_00285 df8f7dfaef8b55ed3e88153c99e38298 229 SMART SM00448 5 117 3.5E-36 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_00285 df8f7dfaef8b55ed3e88153c99e38298 229 SUPERFAMILY SSF52172 5 161 3.42E-37 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_00285 df8f7dfaef8b55ed3e88153c99e38298 229 Gene3D G3DSA:1.10.10.10 131 229 6.0E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_00285 df8f7dfaef8b55ed3e88153c99e38298 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 154 227 1.3E-20 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_00285 df8f7dfaef8b55ed3e88153c99e38298 229 Pfam PF00072 Response regulator receiver domain 7 117 5.7E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_00285 df8f7dfaef8b55ed3e88153c99e38298 229 SMART SM00862 152 227 1.2E-17 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_00285 df8f7dfaef8b55ed3e88153c99e38298 229 SUPERFAMILY SSF46894 126 228 1.63E-19 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMK58_00285 df8f7dfaef8b55ed3e88153c99e38298 229 Gene3D G3DSA:3.40.50.2300 4 130 2.3E-33 T 11-10-2018 AMK58_19835 2a6ce94d938a2aff0ae88bfe2440e436 401 SUPERFAMILY SSF103473 5 392 2.62E-50 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_19835 2a6ce94d938a2aff0ae88bfe2440e436 401 Gene3D G3DSA:1.20.1250.20 218 397 4.2E-17 T 11-10-2018 AMK58_19835 2a6ce94d938a2aff0ae88bfe2440e436 401 Pfam PF07690 Major Facilitator Superfamily 23 241 2.4E-20 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMK58_19835 2a6ce94d938a2aff0ae88bfe2440e436 401 Gene3D G3DSA:1.20.1250.20 14 200 2.2E-20 T 11-10-2018 AMK58_03135 5c73e2886be6a4760a31ef72816eff6b 336 Gene3D G3DSA:3.40.50.1000 125 301 2.7E-43 T 11-10-2018 IPR023214 HAD superfamily AMK58_03135 5c73e2886be6a4760a31ef72816eff6b 336 Pfam PF12710 haloacid dehalogenase-like hydrolase 68 272 2.7E-25 T 11-10-2018 AMK58_03135 5c73e2886be6a4760a31ef72816eff6b 336 SUPERFAMILY SSF56784 66 319 3.92E-26 T 11-10-2018 IPR036412 HAD-like superfamily AMK58_03780 2e74192fe363e52546cd5ac44ce686ba 149 Pfam PF03733 Inner membrane component domain 7 57 4.7E-17 T 11-10-2018 IPR005185 Inner membrane component domain AMK58_03780 2e74192fe363e52546cd5ac44ce686ba 149 Pfam PF03733 Inner membrane component domain 79 128 1.4E-17 T 11-10-2018 IPR005185 Inner membrane component domain AMK58_03780 2e74192fe363e52546cd5ac44ce686ba 149 PIRSF PIRSF028777 4 141 2.7E-46 T 11-10-2018 IPR031308 Uncharacterised conserved protein UCP028777 AMK58_00155 23a790b518518fa38fa90e30769961e1 496 SUPERFAMILY SSF53474 74 460 8.7E-28 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_00155 23a790b518518fa38fa90e30769961e1 496 Pfam PF00561 alpha/beta hydrolase fold 80 459 2.6E-21 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_09535 a1928c4d81ee19e265ea8af293a6081e 174 SUPERFAMILY SSF55021 93 171 9.82E-11 T 11-10-2018 AMK58_09535 a1928c4d81ee19e265ea8af293a6081e 174 Pfam PF13740 ACT domain 97 169 2.0E-5 T 11-10-2018 AMK58_09535 a1928c4d81ee19e265ea8af293a6081e 174 Gene3D G3DSA:3.30.70.260 3 82 2.4E-10 T 11-10-2018 AMK58_09535 a1928c4d81ee19e265ea8af293a6081e 174 SUPERFAMILY SSF55021 4 82 2.79E-11 T 11-10-2018 AMK58_09535 a1928c4d81ee19e265ea8af293a6081e 174 Gene3D G3DSA:3.30.70.260 92 173 1.3E-11 T 11-10-2018 AMK58_26265 116944d6f2c1620bf5e7ed760e84ac1b 252 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 81 100 2.1E-15 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 AMK58_26265 116944d6f2c1620bf5e7ed760e84ac1b 252 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 203 222 2.1E-15 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 AMK58_26265 116944d6f2c1620bf5e7ed760e84ac1b 252 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 181 203 2.1E-15 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 AMK58_26265 116944d6f2c1620bf5e7ed760e84ac1b 252 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 21 42 2.1E-15 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 AMK58_26265 116944d6f2c1620bf5e7ed760e84ac1b 252 Pfam PF01311 Bacterial export proteins, family 1 14 243 4.6E-44 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 AMK58_03205 92fc0bb7178d8e87cb2b02802258ea87 237 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_03205 92fc0bb7178d8e87cb2b02802258ea87 237 SMART SM00382 26 213 3.4E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_03205 92fc0bb7178d8e87cb2b02802258ea87 237 SUPERFAMILY SSF52540 2 232 5.54E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_03205 92fc0bb7178d8e87cb2b02802258ea87 237 Pfam PF00005 ABC transporter 17 162 2.6E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_03205 92fc0bb7178d8e87cb2b02802258ea87 237 Gene3D G3DSA:3.40.50.300 1 235 6.3E-62 T 11-10-2018 AMK58_17710 884365fab839886c2d0f8c4fdd155647 670 SMART SM00028 45 78 140.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_17710 884365fab839886c2d0f8c4fdd155647 670 SMART SM00028 181 214 17.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_17710 884365fab839886c2d0f8c4fdd155647 670 SMART SM00028 79 112 49.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_17710 884365fab839886c2d0f8c4fdd155647 670 SMART SM00028 113 146 1.2 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_17710 884365fab839886c2d0f8c4fdd155647 670 SMART SM00028 147 180 0.0043 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_17710 884365fab839886c2d0f8c4fdd155647 670 Pfam PF13181 Tetratricopeptide repeat 117 145 0.011 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_17710 884365fab839886c2d0f8c4fdd155647 670 Pfam PF13432 Tetratricopeptide repeat 151 209 5.3E-8 T 11-10-2018 AMK58_17710 884365fab839886c2d0f8c4fdd155647 670 SUPERFAMILY SSF53756 308 648 5.65E-11 T 11-10-2018 AMK58_17710 884365fab839886c2d0f8c4fdd155647 670 Gene3D G3DSA:1.25.40.10 2 152 2.7E-18 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_17710 884365fab839886c2d0f8c4fdd155647 670 Gene3D G3DSA:3.40.50.11380 291 641 1.3E-152 T 11-10-2018 AMK58_17710 884365fab839886c2d0f8c4fdd155647 670 Gene3D G3DSA:1.25.40.10 153 187 1.6E-11 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_17710 884365fab839886c2d0f8c4fdd155647 670 Gene3D G3DSA:1.25.40.10 188 251 7.2E-9 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_17710 884365fab839886c2d0f8c4fdd155647 670 Gene3D G3DSA:3.40.50.2000 456 634 1.3E-152 T 11-10-2018 AMK58_17710 884365fab839886c2d0f8c4fdd155647 670 SUPERFAMILY SSF48452 32 240 7.3E-31 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_17710 884365fab839886c2d0f8c4fdd155647 670 Pfam PF13844 Glycosyl transferase family 41 299 445 4.4E-43 T 11-10-2018 IPR029489 O-GlcNAc transferase, C-terminal KEGG: 00514+2.4.1.255|MetaCyc: PWY-7437|Reactome: R-HSA-3214847|Reactome: R-HSA-5689603 AMK58_17710 884365fab839886c2d0f8c4fdd155647 670 Pfam PF13844 Glycosyl transferase family 41 459 652 9.3E-51 T 11-10-2018 IPR029489 O-GlcNAc transferase, C-terminal KEGG: 00514+2.4.1.255|MetaCyc: PWY-7437|Reactome: R-HSA-3214847|Reactome: R-HSA-5689603 AMK58_00515 7297ac5a095f94a49c8232be7d88041d 518 SUPERFAMILY SSF50494 352 484 6.2E-6 T 11-10-2018 IPR009003 Peptidase S1, PA clan AMK58_21820 12ab4febeea1652cd68704443c8e91e0 52 Pfam PF06796 Periplasmic nitrate reductase protein NapE 4 49 7.6E-24 T 11-10-2018 IPR010649 Nitrate/trimethylamine N-oxide reductase NapE/TorE AMK58_21820 12ab4febeea1652cd68704443c8e91e0 52 TIGRFAM TIGR02973 nitrate_rd_NapE: periplasmic nitrate reductase, NapE protein 7 48 2.2E-23 T 11-10-2018 IPR004448 Nitrate reductas, NapE, periplasmic AMK58_07475 5b3f1241c7f934ecb2840262de4ad2a5 240 Pfam PF00005 ABC transporter 27 168 1.0E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_07475 5b3f1241c7f934ecb2840262de4ad2a5 240 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_07475 5b3f1241c7f934ecb2840262de4ad2a5 240 Gene3D G3DSA:3.40.50.300 7 240 1.5E-52 T 11-10-2018 AMK58_07475 5b3f1241c7f934ecb2840262de4ad2a5 240 SUPERFAMILY SSF52540 11 237 2.88E-55 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_07475 5b3f1241c7f934ecb2840262de4ad2a5 240 SMART SM00382 36 217 7.4E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_19615 7e3d3d2d84e1e3574a36c55f30a3f3d4 499 SUPERFAMILY SSF56059 56 477 1.02E-60 T 11-10-2018 AMK58_19615 7e3d3d2d84e1e3574a36c55f30a3f3d4 499 Gene3D G3DSA:3.40.50.11290 225 322 2.2E-42 T 11-10-2018 AMK58_19615 7e3d3d2d84e1e3574a36c55f30a3f3d4 499 PIRSF PIRSF005522 8 488 7.1E-216 T 11-10-2018 IPR016450 Uncharacterised conserved protein UCP005522 AMK58_19615 7e3d3d2d84e1e3574a36c55f30a3f3d4 499 Pfam PF14403 Circularly permuted ATP-grasp type 2 87 462 8.1E-162 T 11-10-2018 IPR025841 Circularly permuted ATP-grasp type 2 AMK58_19615 7e3d3d2d84e1e3574a36c55f30a3f3d4 499 Gene3D G3DSA:3.30.1490.270 360 419 5.6E-24 T 11-10-2018 AMK58_28870 1dfac1b164fb9a6aeffac546079dfae0 361 Gene3D G3DSA:3.40.50.2000 1 179 3.3E-5 T 11-10-2018 AMK58_28870 1dfac1b164fb9a6aeffac546079dfae0 361 Gene3D G3DSA:3.40.50.2000 209 339 6.9E-23 T 11-10-2018 AMK58_28870 1dfac1b164fb9a6aeffac546079dfae0 361 SUPERFAMILY SSF53756 2 353 2.74E-32 T 11-10-2018 AMK58_28870 1dfac1b164fb9a6aeffac546079dfae0 361 Pfam PF13692 Glycosyl transferases group 1 190 320 1.2E-13 T 11-10-2018 AMK58_16845 e18080eaa847183079830780d37a0d20 421 PRINTS PR00981 Seryl-tRNA synthetase signature 312 325 3.1E-33 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMK58_16845 e18080eaa847183079830780d37a0d20 421 PRINTS PR00981 Seryl-tRNA synthetase signature 272 285 3.1E-33 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMK58_16845 e18080eaa847183079830780d37a0d20 421 PRINTS PR00981 Seryl-tRNA synthetase signature 329 345 3.1E-33 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMK58_16845 e18080eaa847183079830780d37a0d20 421 PRINTS PR00981 Seryl-tRNA synthetase signature 347 363 3.1E-33 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMK58_16845 e18080eaa847183079830780d37a0d20 421 PRINTS PR00981 Seryl-tRNA synthetase signature 260 272 3.1E-33 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMK58_16845 e18080eaa847183079830780d37a0d20 421 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 221 396 5.2E-35 T 11-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMK58_16845 e18080eaa847183079830780d37a0d20 421 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 418 40.749 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMK58_16845 e18080eaa847183079830780d37a0d20 421 SUPERFAMILY SSF46589 1 112 5.23E-30 T 11-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 AMK58_16845 e18080eaa847183079830780d37a0d20 421 SUPERFAMILY SSF55681 116 414 4.33E-95 T 11-10-2018 AMK58_16845 e18080eaa847183079830780d37a0d20 421 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 107 5.4E-29 T 11-10-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 AMK58_16845 e18080eaa847183079830780d37a0d20 421 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 413 3.5E-159 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMK58_16845 e18080eaa847183079830780d37a0d20 421 Gene3D G3DSA:1.10.287.40 3 104 2.8E-24 T 11-10-2018 AMK58_16845 e18080eaa847183079830780d37a0d20 421 Gene3D G3DSA:3.30.930.10 105 421 1.7E-121 T 11-10-2018 AMK58_16845 e18080eaa847183079830780d37a0d20 421 PIRSF PIRSF001529 1 421 1.0E-168 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMK58_25405 8c1e67f58538e81fb9d24dd3e5944261 96 Pfam PF11747 Killing trait 11 78 1.1E-30 T 11-10-2018 IPR021070 Killing trait, RebB AMK58_08670 26314e12a12a3fba3bd3df1e9ede4d3e 195 Gene3D G3DSA:3.30.1380.10 77 195 5.5E-13 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AMK58_08670 26314e12a12a3fba3bd3df1e9ede4d3e 195 SUPERFAMILY SSF55166 76 194 4.32E-34 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AMK58_08670 26314e12a12a3fba3bd3df1e9ede4d3e 195 Pfam PF05951 Bacterial protein of unknown function (DUF882) 46 193 1.5E-57 T 11-10-2018 IPR010275 Protein of unknown function DUF882 AMK58_19040 7b413f95ff5e23a467eeceb5905d77fb 137 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 29 114 1.7E-15 T 11-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 AMK58_19040 7b413f95ff5e23a467eeceb5905d77fb 137 Gene3D G3DSA:2.170.150.70 7 119 3.2E-16 T 11-10-2018 AMK58_19040 7b413f95ff5e23a467eeceb5905d77fb 137 SUPERFAMILY SSF51316 5 135 1.15E-40 T 11-10-2018 IPR011057 Mss4-like superfamily AMK58_20965 3cd5b62b630435d3e69f8ac9ac729ba7 153 Gene3D G3DSA:2.30.30.40 52 110 5.2E-8 T 11-10-2018 AMK58_20965 3cd5b62b630435d3e69f8ac9ac729ba7 153 Pfam PF08239 Bacterial SH3 domain 59 107 2.3E-9 T 11-10-2018 IPR003646 SH3-like domain, bacterial-type AMK58_02640 6c8bfaaaacb25d962577a9463ba7c493 315 Pfam PF03547 Membrane transport protein 4 143 4.1E-11 T 11-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 AMK58_02640 6c8bfaaaacb25d962577a9463ba7c493 315 Pfam PF03547 Membrane transport protein 161 307 2.4E-18 T 11-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 AMK58_10045 6d3df1c285078c608c1927358b338418 106 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 6.7E-14 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 AMK58_10045 6d3df1c285078c608c1927358b338418 106 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 6.7E-14 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 AMK58_10045 6d3df1c285078c608c1927358b338418 106 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 6.7E-14 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 AMK58_10045 6d3df1c285078c608c1927358b338418 106 Pfam PF01313 Bacterial export proteins, family 3 6 77 1.6E-23 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 AMK58_19385 96426af92df98e308bb5d10b38f93b0e 159 PIRSF PIRSF032064 1 154 3.6E-33 T 11-10-2018 IPR010593 Protein of unknown function DUF1159 AMK58_19385 96426af92df98e308bb5d10b38f93b0e 159 Pfam PF05258 Protein of unknown function (DUF721) 7 99 3.2E-17 T 11-10-2018 IPR007922 Protein of unknown function DUF721/UPF0232 AMK58_23345 830f4a24ddda012a46f488a158ca20b6 370 SUPERFAMILY SSF111369 200 316 1.11E-13 T 11-10-2018 AMK58_23345 830f4a24ddda012a46f488a158ca20b6 370 Gene3D G3DSA:2.40.50.100 74 105 5.4E-14 T 11-10-2018 AMK58_23345 830f4a24ddda012a46f488a158ca20b6 370 Gene3D G3DSA:2.40.30.170 255 368 3.4E-36 T 11-10-2018 AMK58_23345 830f4a24ddda012a46f488a158ca20b6 370 SUPERFAMILY SSF111369 72 130 2.22E-9 T 11-10-2018 AMK58_23345 830f4a24ddda012a46f488a158ca20b6 370 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 72 314 1.7E-18 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMK58_23345 830f4a24ddda012a46f488a158ca20b6 370 Gene3D G3DSA:1.10.287.470 106 134 5.4E-14 T 11-10-2018 AMK58_23345 830f4a24ddda012a46f488a158ca20b6 370 Gene3D G3DSA:1.10.287.470 140 207 3.9E-9 T 11-10-2018 AMK58_10005 46cc58c34f5feb687e18ca78cda3ac0a 281 Gene3D G3DSA:3.40.50.300 5 199 1.2E-25 T 11-10-2018 AMK58_10005 46cc58c34f5feb687e18ca78cda3ac0a 281 Pfam PF07728 AAA domain (dynein-related subfamily) 29 171 2.7E-13 T 11-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 AMK58_10005 46cc58c34f5feb687e18ca78cda3ac0a 281 SUPERFAMILY SSF52540 7 237 2.61E-35 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_10005 46cc58c34f5feb687e18ca78cda3ac0a 281 SMART SM00382 25 183 4.6E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_22635 8fd5e29fe1a19477a7e3ad3cc729dfb6 733 Gene3D G3DSA:1.10.287.470 499 558 1.9E-16 T 11-10-2018 AMK58_22635 8fd5e29fe1a19477a7e3ad3cc729dfb6 733 Gene3D G3DSA:2.40.50.100 468 595 1.9E-16 T 11-10-2018 AMK58_22635 8fd5e29fe1a19477a7e3ad3cc729dfb6 733 Gene3D G3DSA:2.40.30.170 596 637 1.9E-16 T 11-10-2018 AMK58_22635 8fd5e29fe1a19477a7e3ad3cc729dfb6 733 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 469 634 7.6E-9 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMK58_25240 1ef747a6fa888bf978171288d7b647b0 764 Gene3D G3DSA:3.30.70.100 634 723 4.5E-23 T 11-10-2018 AMK58_25240 1ef747a6fa888bf978171288d7b647b0 764 SUPERFAMILY SSF50182 568 628 2.58E-12 T 11-10-2018 IPR010920 LSM domain superfamily AMK58_25240 1ef747a6fa888bf978171288d7b647b0 764 Gene3D G3DSA:2.30.30.60 584 632 6.9E-16 T 11-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily AMK58_25240 1ef747a6fa888bf978171288d7b647b0 764 Pfam PF00924 Mechanosensitive ion channel 526 725 1.9E-40 T 11-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 AMK58_25240 1ef747a6fa888bf978171288d7b647b0 764 SUPERFAMILY SSF82861 508 566 2.48E-12 T 11-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 AMK58_25240 1ef747a6fa888bf978171288d7b647b0 764 SUPERFAMILY SSF82689 633 735 3.14E-16 T 11-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 AMK58_14580 c36e953ceca7e6d395e48f1538868ce1 889 TIGRFAM TIGR03480 HpnN: hopanoid biosynthesis associated RND transporter like protein HpnN 11 868 5.9E-241 T 11-10-2018 IPR017841 Hopanoid biosynthesis associated RND transporter-like protein HpnN AMK58_14580 c36e953ceca7e6d395e48f1538868ce1 889 SUPERFAMILY SSF82866 238 432 3.4E-26 T 11-10-2018 AMK58_14580 c36e953ceca7e6d395e48f1538868ce1 889 SUPERFAMILY SSF82866 679 876 1.2E-29 T 11-10-2018 AMK58_14580 c36e953ceca7e6d395e48f1538868ce1 889 Gene3D G3DSA:1.20.1640.10 685 884 6.6E-9 T 11-10-2018 AMK58_14580 c36e953ceca7e6d395e48f1538868ce1 889 Pfam PF03176 MMPL family 241 451 3.4E-20 T 11-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 AMK58_14580 c36e953ceca7e6d395e48f1538868ce1 889 Pfam PF03176 MMPL family 632 877 1.0E-15 T 11-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 AMK58_14580 c36e953ceca7e6d395e48f1538868ce1 889 Gene3D G3DSA:1.20.1640.10 234 438 2.3E-12 T 11-10-2018 AMK58_27930 e04ad09501a5381c824ce48ea7f7e0fd 231 Gene3D G3DSA:3.10.290.30 14 168 7.5E-40 T 11-10-2018 IPR024047 MM3350-like superfamily AMK58_27930 e04ad09501a5381c824ce48ea7f7e0fd 231 SUPERFAMILY SSF159941 19 150 1.44E-42 T 11-10-2018 IPR024047 MM3350-like superfamily AMK58_27930 e04ad09501a5381c824ce48ea7f7e0fd 231 Pfam PF07929 Plasmid pRiA4b ORF-3-like protein 19 149 6.6E-40 T 11-10-2018 IPR012912 Plasmid pRiA4b, Orf3 AMK58_23330 8366500d0e24c8afb45c7756905dfb7e 706 Gene3D G3DSA:3.90.550.10 16 254 1.9E-32 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_23330 8366500d0e24c8afb45c7756905dfb7e 706 Pfam PF00535 Glycosyl transferase family 2 22 141 3.1E-17 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMK58_23330 8366500d0e24c8afb45c7756905dfb7e 706 SUPERFAMILY SSF53448 20 231 6.75E-35 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_15770 008cd89a246b5a30ecd67076855082e5 551 Gene3D G3DSA:3.40.50.12780 19 427 2.7E-96 T 11-10-2018 AMK58_15770 008cd89a246b5a30ecd67076855082e5 551 Pfam PF13193 AMP-binding enzyme C-terminal domain 441 512 3.1E-14 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMK58_15770 008cd89a246b5a30ecd67076855082e5 551 SUPERFAMILY SSF56801 13 530 4.58E-125 T 11-10-2018 AMK58_15770 008cd89a246b5a30ecd67076855082e5 551 Pfam PF00501 AMP-binding enzyme 29 428 4.3E-77 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMK58_15770 008cd89a246b5a30ecd67076855082e5 551 ProSitePatterns PS00455 Putative AMP-binding domain signature. 184 195 - T 11-10-2018 IPR020845 AMP-binding, conserved site AMK58_15770 008cd89a246b5a30ecd67076855082e5 551 Gene3D G3DSA:3.30.300.30 428 532 8.4E-23 T 11-10-2018 AMK58_01280 db4abc0b7d202be2868edb08220a25f3 528 Pfam PF11849 Domain of unknown function (DUF3369) 154 322 8.4E-58 T 11-10-2018 IPR021800 Domain of unknown function DUF3369 AMK58_01280 db4abc0b7d202be2868edb08220a25f3 528 SMART SM00471 335 492 1.4E-5 T 11-10-2018 IPR003607 HD/PDEase domain AMK58_01280 db4abc0b7d202be2868edb08220a25f3 528 Gene3D G3DSA:1.10.3210.10 319 527 5.4E-59 T 11-10-2018 AMK58_01280 db4abc0b7d202be2868edb08220a25f3 528 SUPERFAMILY SSF109604 374 521 6.85E-28 T 11-10-2018 AMK58_01280 db4abc0b7d202be2868edb08220a25f3 528 Gene3D G3DSA:3.40.50.2300 32 171 5.0E-14 T 11-10-2018 AMK58_01280 db4abc0b7d202be2868edb08220a25f3 528 SUPERFAMILY SSF52172 29 167 2.13E-12 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_01280 db4abc0b7d202be2868edb08220a25f3 528 Pfam PF13487 HD domain 405 473 5.5E-17 T 11-10-2018 AMK58_01280 db4abc0b7d202be2868edb08220a25f3 528 Pfam PF00072 Response regulator receiver domain 34 143 2.7E-8 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_15090 a4173d3965821b5c31d9eb77eadcc22d 373 SUPERFAMILY SSF56281 13 358 6.81E-43 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMK58_15090 a4173d3965821b5c31d9eb77eadcc22d 373 SMART SM00849 24 203 1.3E-11 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMK58_15090 a4173d3965821b5c31d9eb77eadcc22d 373 Pfam PF00753 Metallo-beta-lactamase superfamily 32 158 2.0E-10 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMK58_15090 a4173d3965821b5c31d9eb77eadcc22d 373 Gene3D G3DSA:3.40.50.10890 178 316 4.4E-11 T 11-10-2018 AMK58_15090 a4173d3965821b5c31d9eb77eadcc22d 373 Gene3D G3DSA:3.60.15.10 11 101 6.2E-11 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMK58_15090 a4173d3965821b5c31d9eb77eadcc22d 373 Gene3D G3DSA:3.60.15.10 105 177 4.4E-11 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMK58_12625 92437a38127fc00aaa8860ce8890fa75 445 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 13 433 8.5E-104 T 11-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 AMK58_12625 92437a38127fc00aaa8860ce8890fa75 445 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 13 441 30.089 T 11-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 AMK58_12625 92437a38127fc00aaa8860ce8890fa75 445 Gene3D G3DSA:3.65.10.10 15 435 1.5E-140 T 11-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 AMK58_12625 92437a38127fc00aaa8860ce8890fa75 445 Gene3D G3DSA:3.65.10.10 25 239 1.5E-140 T 11-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 AMK58_12625 92437a38127fc00aaa8860ce8890fa75 445 SUPERFAMILY SSF55205 12 441 7.36E-122 T 11-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 AMK58_12625 92437a38127fc00aaa8860ce8890fa75 445 ProSitePatterns PS00104 EPSP synthase signature 1. 92 106 - T 11-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 AMK58_12625 92437a38127fc00aaa8860ce8890fa75 445 PIRSF PIRSF000505 1 445 6.0E-118 T 11-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 AMK58_12625 92437a38127fc00aaa8860ce8890fa75 445 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 17 440 8.8E-119 T 11-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 AMK58_15965 792517edfb4eea2f4da71767cb236910 186 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 44 66 - T 11-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMK58_15965 792517edfb4eea2f4da71767cb236910 186 Pfam PF01066 CDP-alcohol phosphatidyltransferase 3 66 1.0E-13 T 11-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMK58_15965 792517edfb4eea2f4da71767cb236910 186 Gene3D G3DSA:1.20.120.1760 2 176 9.2E-13 T 11-10-2018 AMK58_15965 792517edfb4eea2f4da71767cb236910 186 PIRSF PIRSF000847 1 183 4.0E-38 T 11-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 AMK58_14655 8a01121489fffd9dafe140cfc856506b 614 SUPERFAMILY SSF47384 385 461 4.51E-9 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_14655 8a01121489fffd9dafe140cfc856506b 614 Pfam PF05231 MASE1 9 283 5.4E-11 T 11-10-2018 IPR007895 MASE1 AMK58_14655 8a01121489fffd9dafe140cfc856506b 614 SMART SM00387 505 614 7.0E-21 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_14655 8a01121489fffd9dafe140cfc856506b 614 SUPERFAMILY SSF55874 457 610 1.96E-28 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_14655 8a01121489fffd9dafe140cfc856506b 614 Pfam PF00512 His Kinase A (phospho-acceptor) domain 399 461 2.1E-7 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_14655 8a01121489fffd9dafe140cfc856506b 614 Gene3D G3DSA:3.30.565.10 466 613 2.1E-29 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_14655 8a01121489fffd9dafe140cfc856506b 614 PRINTS PR00344 Bacterial sensor protein C-terminal signature 598 611 7.8E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_14655 8a01121489fffd9dafe140cfc856506b 614 PRINTS PR00344 Bacterial sensor protein C-terminal signature 574 592 7.8E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_14655 8a01121489fffd9dafe140cfc856506b 614 PRINTS PR00344 Bacterial sensor protein C-terminal signature 543 557 7.8E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_14655 8a01121489fffd9dafe140cfc856506b 614 PRINTS PR00344 Bacterial sensor protein C-terminal signature 561 571 7.8E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_14655 8a01121489fffd9dafe140cfc856506b 614 Gene3D G3DSA:1.10.287.130 390 462 3.6E-13 T 11-10-2018 AMK58_14655 8a01121489fffd9dafe140cfc856506b 614 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 510 611 1.2E-16 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_14655 8a01121489fffd9dafe140cfc856506b 614 SMART SM00388 397 464 6.1E-7 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_11980 d32f344150f2cd6a8cb54f31b09f146a 462 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 310 317 - T 11-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AMK58_11980 d32f344150f2cd6a8cb54f31b09f146a 462 Gene3D G3DSA:3.40.630.10 137 461 8.3E-122 T 11-10-2018 AMK58_11980 d32f344150f2cd6a8cb54f31b09f146a 462 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 151 449 2.1E-103 T 11-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AMK58_11980 d32f344150f2cd6a8cb54f31b09f146a 462 SUPERFAMILY SSF53187 146 458 5.02E-104 T 11-10-2018 AMK58_11980 d32f344150f2cd6a8cb54f31b09f146a 462 PRINTS PR00481 Cytosol aminopeptidase signature 284 305 3.8E-40 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMK58_11980 d32f344150f2cd6a8cb54f31b09f146a 462 PRINTS PR00481 Cytosol aminopeptidase signature 306 326 3.8E-40 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMK58_11980 d32f344150f2cd6a8cb54f31b09f146a 462 PRINTS PR00481 Cytosol aminopeptidase signature 334 349 3.8E-40 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMK58_11980 d32f344150f2cd6a8cb54f31b09f146a 462 PRINTS PR00481 Cytosol aminopeptidase signature 225 242 3.8E-40 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMK58_11980 d32f344150f2cd6a8cb54f31b09f146a 462 PRINTS PR00481 Cytosol aminopeptidase signature 247 268 3.8E-40 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMK58_11980 d32f344150f2cd6a8cb54f31b09f146a 462 Gene3D G3DSA:3.40.220.10 7 134 1.3E-31 T 11-10-2018 AMK58_24450 fc7e4de3603bbe744fa3cf9711c09cbc 261 SUPERFAMILY SSF51735 15 259 2.08E-76 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_24450 fc7e4de3603bbe744fa3cf9711c09cbc 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 92 103 2.5E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_24450 fc7e4de3603bbe744fa3cf9711c09cbc 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 153 2.5E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_24450 fc7e4de3603bbe744fa3cf9711c09cbc 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 165 184 2.5E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_24450 fc7e4de3603bbe744fa3cf9711c09cbc 261 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 17 196 4.9E-4 T 11-10-2018 AMK58_24450 fc7e4de3603bbe744fa3cf9711c09cbc 261 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 25 258 2.7E-62 T 11-10-2018 AMK58_24450 fc7e4de3603bbe744fa3cf9711c09cbc 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 92 103 1.9E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_24450 fc7e4de3603bbe744fa3cf9711c09cbc 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 186 203 1.9E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_24450 fc7e4de3603bbe744fa3cf9711c09cbc 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 221 241 1.9E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_24450 fc7e4de3603bbe744fa3cf9711c09cbc 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 155 1.9E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_24450 fc7e4de3603bbe744fa3cf9711c09cbc 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 18 35 1.9E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_24450 fc7e4de3603bbe744fa3cf9711c09cbc 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 184 1.9E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_24450 fc7e4de3603bbe744fa3cf9711c09cbc 261 Gene3D G3DSA:3.40.50.720 4 260 9.6E-78 T 11-10-2018 AMK58_24450 fc7e4de3603bbe744fa3cf9711c09cbc 261 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 152 180 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMK58_14180 c962c11f87df71688f5751786c15168f 244 SMART SM00382 28 215 3.3E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_14180 c962c11f87df71688f5751786c15168f 244 PIRSF PIRSF039085 1 243 4.4E-107 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AMK58_14180 c962c11f87df71688f5751786c15168f 244 SUPERFAMILY SSF52540 3 237 2.66E-76 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_14180 c962c11f87df71688f5751786c15168f 244 Pfam PF00005 ABC transporter 19 167 5.0E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_14180 c962c11f87df71688f5751786c15168f 244 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_14180 c962c11f87df71688f5751786c15168f 244 Gene3D G3DSA:3.40.50.300 1 242 5.2E-75 T 11-10-2018 AMK58_13385 d148605392db6c0be765b234792b604a 115 Pfam PF05717 IS66 Orf2 like protein 9 106 1.9E-39 T 11-10-2018 IPR008878 Transposase IS66, Orf2 AMK58_21780 50447f593b39ccfca3885f0e178934ae 177 SUPERFAMILY SSF46689 119 173 1.05E-14 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_21780 50447f593b39ccfca3885f0e178934ae 177 SUPERFAMILY SSF52172 4 120 1.12E-26 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_21780 50447f593b39ccfca3885f0e178934ae 177 Pfam PF00072 Response regulator receiver domain 8 116 6.2E-19 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_21780 50447f593b39ccfca3885f0e178934ae 177 SMART SM00448 5 116 2.0E-20 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_21780 50447f593b39ccfca3885f0e178934ae 177 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 157 177 1.0E-7 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMK58_21780 50447f593b39ccfca3885f0e178934ae 177 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 140 157 1.0E-7 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMK58_21780 50447f593b39ccfca3885f0e178934ae 177 Gene3D G3DSA:1.10.10.60 120 175 1.5E-19 T 11-10-2018 AMK58_21780 50447f593b39ccfca3885f0e178934ae 177 Pfam PF02954 Bacterial regulatory protein, Fis family 134 173 1.7E-12 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMK58_21780 50447f593b39ccfca3885f0e178934ae 177 Gene3D G3DSA:3.40.50.2300 2 119 5.9E-25 T 11-10-2018 AMK58_28210 7c00c5eb9974344580620d73cd05c4bd 420 Pfam PF00266 Aminotransferase class-V 90 392 1.5E-45 T 11-10-2018 IPR000192 Aminotransferase class V domain AMK58_28210 7c00c5eb9974344580620d73cd05c4bd 420 Gene3D G3DSA:3.40.640.10 67 324 7.1E-77 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_28210 7c00c5eb9974344580620d73cd05c4bd 420 SUPERFAMILY SSF53383 42 413 2.59E-69 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_28210 7c00c5eb9974344580620d73cd05c4bd 420 Gene3D G3DSA:3.90.1150.10 58 405 7.1E-77 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_14930 be04b76e6c9f2d35ebf206474baaafef 250 SUPERFAMILY SSF53790 9 245 1.96E-43 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 AMK58_14930 be04b76e6c9f2d35ebf206474baaafef 250 Gene3D G3DSA:3.40.1010.10 12 144 7.4E-28 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 AMK58_14930 be04b76e6c9f2d35ebf206474baaafef 250 PIRSF PIRSF036427 11 250 1.1E-64 T 11-10-2018 IPR012382 Precorrin-2 C(20)-methyltransferase GO:0008757|GO:0009236|GO:0030788 AMK58_14930 be04b76e6c9f2d35ebf206474baaafef 250 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 14 226 3.4E-42 T 11-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 AMK58_14930 be04b76e6c9f2d35ebf206474baaafef 250 Gene3D G3DSA:3.30.950.10 146 246 6.9E-15 T 11-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 AMK58_14930 be04b76e6c9f2d35ebf206474baaafef 250 TIGRFAM TIGR01467 cobI_cbiL: precorrin-2 C(20)-methyltransferase 13 244 1.3E-60 T 11-10-2018 IPR006364 Precorrin-2 C(20)-methyltransferase domain GO:0008757|GO:0009236 AMK58_20675 5bdf9136d81e2539e5198ab6c57bf800 556 Pfam PF00474 Sodium:solute symporter family 69 475 2.9E-113 T 11-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 AMK58_20675 5bdf9136d81e2539e5198ab6c57bf800 556 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 184 209 - T 11-10-2018 IPR018212 Sodium/solute symporter, conserved site AMK58_20675 5bdf9136d81e2539e5198ab6c57bf800 556 Gene3D G3DSA:1.20.1730.10 37 552 7.9E-62 T 11-10-2018 IPR038377 Sodium/glucose symporter superfamily AMK58_20675 5bdf9136d81e2539e5198ab6c57bf800 556 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 69 475 7.8E-63 T 11-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 AMK58_19165 82b7b50a73e6cb98b3dd1cb8535568c0 304 SMART SM00830 12 103 1.2E-21 T 11-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AMK58_19165 82b7b50a73e6cb98b3dd1cb8535568c0 304 Pfam PF01817 Chorismate mutase type II 12 100 8.3E-18 T 11-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AMK58_19165 82b7b50a73e6cb98b3dd1cb8535568c0 304 SUPERFAMILY SSF48600 6 101 8.55E-14 T 11-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AMK58_19165 82b7b50a73e6cb98b3dd1cb8535568c0 304 Gene3D G3DSA:1.20.59.10 5 102 9.1E-18 T 11-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AMK58_02555 c163738c4df3b383b1b94145f3d3c93e 417 Pfam PF00364 Biotin-requiring enzyme 4 75 1.6E-21 T 11-10-2018 IPR000089 Biotin/lipoyl attachment AMK58_02555 c163738c4df3b383b1b94145f3d3c93e 417 Gene3D G3DSA:2.40.50.100 1 101 7.8E-27 T 11-10-2018 AMK58_02555 c163738c4df3b383b1b94145f3d3c93e 417 SUPERFAMILY SSF51230 1 95 1.01E-27 T 11-10-2018 IPR011053 Single hybrid motif AMK58_02555 c163738c4df3b383b1b94145f3d3c93e 417 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 11-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 AMK58_02555 c163738c4df3b383b1b94145f3d3c93e 417 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 4 417 2.5E-180 T 11-10-2018 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|Reactome: R-HSA-389661|Reactome: R-HSA-71064|Reactome: R-HSA-71403 AMK58_02555 c163738c4df3b383b1b94145f3d3c93e 417 Gene3D G3DSA:3.30.559.10 185 417 1.1E-97 T 11-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 AMK58_02555 c163738c4df3b383b1b94145f3d3c93e 417 SUPERFAMILY SSF47005 114 155 1.26E-10 T 11-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 AMK58_02555 c163738c4df3b383b1b94145f3d3c93e 417 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 187 415 8.1E-84 T 11-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 AMK58_02555 c163738c4df3b383b1b94145f3d3c93e 417 SUPERFAMILY SSF52777 187 416 3.74E-91 T 11-10-2018 AMK58_02555 c163738c4df3b383b1b94145f3d3c93e 417 Pfam PF02817 e3 binding domain 118 150 1.4E-12 T 11-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 AMK58_02555 c163738c4df3b383b1b94145f3d3c93e 417 Gene3D G3DSA:4.10.320.10 112 156 1.3E-14 T 11-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 AMK58_16795 4f9cd6a341242e99a27d692663e14194 307 Pfam PF05036 Sporulation related domain 226 306 5.9E-11 T 11-10-2018 IPR007730 Sporulation-like domain GO:0042834 AMK58_16795 4f9cd6a341242e99a27d692663e14194 307 SUPERFAMILY SSF110997 225 306 3.14E-5 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 AMK58_18890 8ea761ed711e426870e3097575e1402e 190 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 29 185 1.5E-28 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMK58_18890 8ea761ed711e426870e3097575e1402e 190 SUPERFAMILY SSF88946 12 115 5.69E-26 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMK58_18890 8ea761ed711e426870e3097575e1402e 190 Gene3D G3DSA:1.10.1740.10 13 95 1.8E-28 T 11-10-2018 AMK58_18890 8ea761ed711e426870e3097575e1402e 190 Pfam PF04542 Sigma-70 region 2 33 101 8.0E-20 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMK58_18890 8ea761ed711e426870e3097575e1402e 190 Pfam PF04545 Sigma-70, region 4 136 184 6.3E-12 T 11-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 AMK58_18890 8ea761ed711e426870e3097575e1402e 190 Gene3D G3DSA:1.10.10.10 96 187 1.4E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_18890 8ea761ed711e426870e3097575e1402e 190 SUPERFAMILY SSF88659 114 186 1.09E-13 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMK58_18890 8ea761ed711e426870e3097575e1402e 190 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 55 87 - T 11-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMK58_00945 d7620c6edfd5f5218bdd1f9012ba26d7 269 Gene3D G3DSA:1.10.3720.10 8 265 3.3E-44 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_00945 d7620c6edfd5f5218bdd1f9012ba26d7 269 SUPERFAMILY SSF161098 6 261 7.85E-48 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_00945 d7620c6edfd5f5218bdd1f9012ba26d7 269 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 260 5.1E-13 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_16705 1b43bba60a6daa9c8f4df4edd23e16b9 290 Pfam PF02653 Branched-chain amino acid transport system / permease component 12 278 8.8E-33 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_06670 22f4617e98e9e3f1d3b579714fddac81 175 Gene3D G3DSA:3.40.50.300 4 161 8.4E-11 T 11-10-2018 AMK58_06670 22f4617e98e9e3f1d3b579714fddac81 175 Pfam PF01745 Isopentenyl transferase 11 41 8.9E-5 T 11-10-2018 IPR002648 Adenylate dimethylallyltransferase GO:0004161|GO:0009058 KEGG: 00908+2.5.1.27|MetaCyc: PWY-2681 AMK58_06670 22f4617e98e9e3f1d3b579714fddac81 175 SUPERFAMILY SSF52540 9 121 3.11E-15 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_08490 4908afc92e776b73977742a9adc2145f 693 Gene3D G3DSA:2.40.50.140 49 143 2.5E-11 T 11-10-2018 AMK58_08490 4908afc92e776b73977742a9adc2145f 693 SMART SM00487 262 452 1.0E-27 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMK58_08490 4908afc92e776b73977742a9adc2145f 693 SUPERFAMILY SSF52540 444 645 6.25E-39 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_08490 4908afc92e776b73977742a9adc2145f 693 SMART SM00490 498 580 4.7E-17 T 11-10-2018 IPR001650 Helicase, C-terminal AMK58_08490 4908afc92e776b73977742a9adc2145f 693 SUPERFAMILY SSF52540 180 445 3.4E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_08490 4908afc92e776b73977742a9adc2145f 693 SUPERFAMILY SSF50249 7 175 4.63E-26 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_08490 4908afc92e776b73977742a9adc2145f 693 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 34 656 7.4E-209 T 11-10-2018 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 AMK58_08490 4908afc92e776b73977742a9adc2145f 693 Gene3D G3DSA:3.40.50.300 214 442 1.3E-81 T 11-10-2018 AMK58_08490 4908afc92e776b73977742a9adc2145f 693 Pfam PF00271 Helicase conserved C-terminal domain 470 579 3.7E-16 T 11-10-2018 IPR001650 Helicase, C-terminal AMK58_08490 4908afc92e776b73977742a9adc2145f 693 Gene3D G3DSA:3.40.50.300 450 621 1.0E-49 T 11-10-2018 AMK58_08490 4908afc92e776b73977742a9adc2145f 693 Pfam PF00270 DEAD/DEAH box helicase 268 426 5.1E-16 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMK58_08490 4908afc92e776b73977742a9adc2145f 693 Pfam PF17191 RecG wedge domain 18 174 8.7E-8 T 11-10-2018 IPR033454 RecG, wedge domain AMK58_00180 aca079fcca20fa6f8df944f50455979c 227 SUPERFAMILY SSF56529 20 226 1.57E-72 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AMK58_00180 aca079fcca20fa6f8df944f50455979c 227 Gene3D G3DSA:3.90.850.10 11 227 1.6E-89 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AMK58_00180 aca079fcca20fa6f8df944f50455979c 227 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 25 226 1.5E-53 T 11-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 AMK58_00870 05cdbb446dfc9041f9d7adc5eb42c898 512 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 9 438 5.8E-171 T 11-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 AMK58_00870 05cdbb446dfc9041f9d7adc5eb42c898 512 SUPERFAMILY SSF56112 92 429 1.7E-39 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily AMK58_00870 05cdbb446dfc9041f9d7adc5eb42c898 512 Gene3D G3DSA:1.10.510.10 257 331 4.0E-5 T 11-10-2018 AMK58_00870 05cdbb446dfc9041f9d7adc5eb42c898 512 Pfam PF03109 ABC1 family 109 227 2.9E-33 T 11-10-2018 IPR004147 UbiB domain AMK58_20840 7b590a5f2c63ed2cf3fc321c598852fa 319 Gene3D G3DSA:1.10.3470.10 1 319 2.6E-64 T 11-10-2018 IPR037294 ABC transporter, BtuC-like AMK58_20840 7b590a5f2c63ed2cf3fc321c598852fa 319 Pfam PF01032 FecCD transport family 13 313 1.0E-67 T 11-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 AMK58_20840 7b590a5f2c63ed2cf3fc321c598852fa 319 SUPERFAMILY SSF81345 5 314 1.83E-64 T 11-10-2018 IPR037294 ABC transporter, BtuC-like AMK58_24440 8cbe488a9b94383dca7c1dbfc295a2f6 270 ProSitePatterns PS00770 Aminotransferases class-IV signature. 178 207 - T 11-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 AMK58_24440 8cbe488a9b94383dca7c1dbfc295a2f6 270 Gene3D G3DSA:3.20.10.10 123 264 8.1E-39 T 11-10-2018 AMK58_24440 8cbe488a9b94383dca7c1dbfc295a2f6 270 Gene3D G3DSA:3.30.470.10 1 117 1.4E-36 T 11-10-2018 AMK58_24440 8cbe488a9b94383dca7c1dbfc295a2f6 270 Pfam PF01063 Amino-transferase class IV 30 243 1.1E-49 T 11-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 AMK58_24440 8cbe488a9b94383dca7c1dbfc295a2f6 270 SUPERFAMILY SSF56752 3 265 8.89E-71 T 11-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 AMK58_12920 4fbfcb6230855e133e47e9fb3e7ec426 674 Pfam PF06761 Intracellular multiplication and human macrophage-killing 511 659 3.4E-30 T 11-10-2018 IPR009612 ImcF-related AMK58_12920 4fbfcb6230855e133e47e9fb3e7ec426 674 SUPERFAMILY SSF52540 143 316 2.23E-12 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_12920 4fbfcb6230855e133e47e9fb3e7ec426 674 Pfam PF14331 ImcF-related N-terminal domain 218 450 7.4E-75 T 11-10-2018 IPR025743 ImcF-related, N-terminal domain AMK58_12920 4fbfcb6230855e133e47e9fb3e7ec426 674 TIGRFAM TIGR03348 VI_IcmF: type VI secretion protein IcmF 50 659 2.0E-168 T 11-10-2018 IPR017731 Type VI secretion system, IcmF AMK58_23025 6b193d607006c231d5160ea382f47d09 433 Pfam PF00534 Glycosyl transferases group 1 237 391 8.0E-21 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 AMK58_23025 6b193d607006c231d5160ea382f47d09 433 SUPERFAMILY SSF53756 5 397 3.92E-55 T 11-10-2018 AMK58_23025 6b193d607006c231d5160ea382f47d09 433 Pfam PF13439 Glycosyltransferase Family 4 18 219 1.1E-16 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AMK58_23025 6b193d607006c231d5160ea382f47d09 433 Gene3D G3DSA:3.40.50.2000 231 396 1.4E-32 T 11-10-2018 AMK58_22850 576aaa18642869d8b0581b4228e74629 310 TIGRFAM TIGR02797 exbB: tonB-system energizer ExbB 85 294 1.5E-97 T 11-10-2018 IPR014164 TonB-system energizer ExbB type-1 GO:0016020|GO:0022857|GO:0055085 AMK58_22850 576aaa18642869d8b0581b4228e74629 310 Pfam PF01618 MotA/TolQ/ExbB proton channel family 158 278 6.8E-34 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel AMK58_20475 5eb1178ee88686eec613ba05d361e1e0 430 SUPERFAMILY SSF141571 143 232 3.27E-24 T 11-10-2018 AMK58_20475 5eb1178ee88686eec613ba05d361e1e0 430 Pfam PF00805 Pentapeptide repeats (8 copies) 315 347 1.3E-5 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_20475 5eb1178ee88686eec613ba05d361e1e0 430 Pfam PF00805 Pentapeptide repeats (8 copies) 40 72 3.0E-6 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_20475 5eb1178ee88686eec613ba05d361e1e0 430 Pfam PF00805 Pentapeptide repeats (8 copies) 80 118 8.6E-10 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_20475 5eb1178ee88686eec613ba05d361e1e0 430 Pfam PF00805 Pentapeptide repeats (8 copies) 166 204 3.8E-12 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_20475 5eb1178ee88686eec613ba05d361e1e0 430 Pfam PF00805 Pentapeptide repeats (8 copies) 380 412 6.7E-9 T 11-10-2018 IPR001646 Pentapeptide repeat AMK58_20475 5eb1178ee88686eec613ba05d361e1e0 430 SUPERFAMILY SSF141571 268 418 6.57E-29 T 11-10-2018 AMK58_20475 5eb1178ee88686eec613ba05d361e1e0 430 Gene3D G3DSA:2.160.20.80 138 239 5.8E-25 T 11-10-2018 AMK58_20475 5eb1178ee88686eec613ba05d361e1e0 430 Gene3D G3DSA:2.160.20.80 252 429 4.4E-32 T 11-10-2018 AMK58_20475 5eb1178ee88686eec613ba05d361e1e0 430 Gene3D G3DSA:2.160.20.80 2 118 2.6E-21 T 11-10-2018 AMK58_20475 5eb1178ee88686eec613ba05d361e1e0 430 SUPERFAMILY SSF141571 19 123 2.09E-19 T 11-10-2018 AMK58_22800 b31daa9dc515942ae599e5242a24802f 133 SUPERFAMILY SSF160419 23 124 1.37E-14 T 11-10-2018 IPR036696 YdfO-like superfamily AMK58_22800 b31daa9dc515942ae599e5242a24802f 133 Pfam PF07166 Protein of unknown function (DUF1398) 23 123 9.1E-10 T 11-10-2018 IPR009833 Uncharacterised protein DUF1398 AMK58_06700 cc4d9955ca6a113e9112b98ee2591417 172 Pfam PF13380 CoA binding domain 24 140 1.6E-41 T 11-10-2018 IPR003781 CoA-binding GO:0048037 AMK58_06700 cc4d9955ca6a113e9112b98ee2591417 172 SUPERFAMILY SSF51735 12 143 3.45E-46 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_06700 cc4d9955ca6a113e9112b98ee2591417 172 Gene3D G3DSA:3.40.50.720 7 151 1.5E-45 T 11-10-2018 AMK58_06700 cc4d9955ca6a113e9112b98ee2591417 172 SMART SM00881 20 114 1.8E-31 T 11-10-2018 IPR003781 CoA-binding GO:0048037 AMK58_24720 d0c6326c669732683b2bc92182a5f8c6 269 SMART SM00382 26 218 3.2E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_24720 d0c6326c669732683b2bc92182a5f8c6 269 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_24720 d0c6326c669732683b2bc92182a5f8c6 269 Gene3D G3DSA:3.40.50.300 1 264 4.8E-79 T 11-10-2018 AMK58_24720 d0c6326c669732683b2bc92182a5f8c6 269 PIRSF PIRSF039085 1 246 3.0E-114 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AMK58_24720 d0c6326c669732683b2bc92182a5f8c6 269 Pfam PF00005 ABC transporter 17 170 1.3E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_24720 d0c6326c669732683b2bc92182a5f8c6 269 SUPERFAMILY SSF52540 1 240 3.22E-79 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_17355 15122d7bdd8a977f1f8bb2b78be7ef1b 320 Pfam PF03466 LysR substrate binding domain 88 286 1.7E-36 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_17355 15122d7bdd8a977f1f8bb2b78be7ef1b 320 SUPERFAMILY SSF46785 1 111 1.26E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_17355 15122d7bdd8a977f1f8bb2b78be7ef1b 320 SUPERFAMILY SSF53850 89 294 1.21E-36 T 11-10-2018 AMK58_17355 15122d7bdd8a977f1f8bb2b78be7ef1b 320 Gene3D G3DSA:1.10.10.10 1 84 4.1E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_17355 15122d7bdd8a977f1f8bb2b78be7ef1b 320 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 7.8E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_17355 15122d7bdd8a977f1f8bb2b78be7ef1b 320 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 7.8E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_17355 15122d7bdd8a977f1f8bb2b78be7ef1b 320 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 7.8E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_17355 15122d7bdd8a977f1f8bb2b78be7ef1b 320 Gene3D G3DSA:3.40.190.290 90 289 1.0E-27 T 11-10-2018 AMK58_17355 15122d7bdd8a977f1f8bb2b78be7ef1b 320 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 1.9E-20 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_15745 ed87237e726c8db2d23902fed76d9b57 381 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 279 292 1.5E-8 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMK58_15745 ed87237e726c8db2d23902fed76d9b57 381 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 51 67 1.5E-8 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMK58_15745 ed87237e726c8db2d23902fed76d9b57 381 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 29 45 1.5E-8 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMK58_15745 ed87237e726c8db2d23902fed76d9b57 381 Gene3D G3DSA:3.40.50.2300 30 349 1.9E-67 T 11-10-2018 AMK58_15745 ed87237e726c8db2d23902fed76d9b57 381 Gene3D G3DSA:3.40.50.2300 147 272 1.9E-67 T 11-10-2018 AMK58_15745 ed87237e726c8db2d23902fed76d9b57 381 SUPERFAMILY SSF53822 30 376 1.32E-73 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMK58_15745 ed87237e726c8db2d23902fed76d9b57 381 Pfam PF13458 Periplasmic binding protein 29 370 1.5E-62 T 11-10-2018 IPR028081 Leucine-binding protein domain AMK58_14780 15b85f4c9a90885ffe6f3ece5dd76443 601 Pfam PF13692 Glycosyl transferases group 1 433 560 5.3E-9 T 11-10-2018 AMK58_14780 15b85f4c9a90885ffe6f3ece5dd76443 601 Gene3D G3DSA:3.40.50.2000 416 582 4.7E-16 T 11-10-2018 AMK58_14780 15b85f4c9a90885ffe6f3ece5dd76443 601 Gene3D G3DSA:1.25.40.10 5 136 9.3E-21 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_14780 15b85f4c9a90885ffe6f3ece5dd76443 601 SUPERFAMILY SSF53756 314 593 6.28E-17 T 11-10-2018 AMK58_14780 15b85f4c9a90885ffe6f3ece5dd76443 601 SUPERFAMILY SSF48452 4 126 9.39E-19 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_14780 15b85f4c9a90885ffe6f3ece5dd76443 601 Pfam PF13432 Tetratricopeptide repeat 9 72 1.6E-8 T 11-10-2018 AMK58_14780 15b85f4c9a90885ffe6f3ece5dd76443 601 SMART SM00028 72 105 4.3 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14780 15b85f4c9a90885ffe6f3ece5dd76443 601 SMART SM00028 4 37 84.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14780 15b85f4c9a90885ffe6f3ece5dd76443 601 SMART SM00028 38 71 140.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_19190 73fcd789ff984daa54c2f1ea45a3dfc0 258 SUPERFAMILY SSF53335 21 214 7.78E-22 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_19190 73fcd789ff984daa54c2f1ea45a3dfc0 258 Pfam PF08241 Methyltransferase domain 81 129 2.4E-6 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 AMK58_19190 73fcd789ff984daa54c2f1ea45a3dfc0 258 Gene3D G3DSA:3.40.50.150 10 180 7.3E-16 T 11-10-2018 AMK58_19565 f1b9414b833f4be599315057d861104f 121 Pfam PF00072 Response regulator receiver domain 5 114 4.5E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_19565 f1b9414b833f4be599315057d861104f 121 SUPERFAMILY SSF52172 4 118 5.12E-35 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_19565 f1b9414b833f4be599315057d861104f 121 SMART SM00448 2 115 9.3E-35 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_19565 f1b9414b833f4be599315057d861104f 121 Gene3D G3DSA:3.40.50.12740 3 119 9.0E-36 T 11-10-2018 AMK58_03315 90b67b849060e3e5ad5eca76b3196081 307 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 2 299 7.1E-71 T 11-10-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0008677|GO:0015940 KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 AMK58_03315 90b67b849060e3e5ad5eca76b3196081 307 Gene3D G3DSA:3.40.50.720 1 177 3.9E-60 T 11-10-2018 AMK58_03315 90b67b849060e3e5ad5eca76b3196081 307 SUPERFAMILY SSF48179 180 300 1.36E-24 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMK58_03315 90b67b849060e3e5ad5eca76b3196081 307 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 153 2.4E-40 T 11-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain AMK58_03315 90b67b849060e3e5ad5eca76b3196081 307 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 180 300 2.4E-24 T 11-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain AMK58_03315 90b67b849060e3e5ad5eca76b3196081 307 Gene3D G3DSA:1.10.1040.10 180 307 1.1E-28 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMK58_03315 90b67b849060e3e5ad5eca76b3196081 307 SUPERFAMILY SSF51735 1 155 5.05E-16 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_12040 e0966c4dfd2decb07dc056c415af9cac 451 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 2 449 1.3E-132 T 11-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 AMK58_12040 e0966c4dfd2decb07dc056c415af9cac 451 Pfam PF04055 Radical SAM superfamily 54 222 1.9E-22 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMK58_12040 e0966c4dfd2decb07dc056c415af9cac 451 Gene3D G3DSA:1.10.10.920 361 451 4.7E-17 T 11-10-2018 AMK58_12040 e0966c4dfd2decb07dc056c415af9cac 451 Gene3D G3DSA:3.80.30.20 1 360 7.0E-110 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe AMK58_12040 e0966c4dfd2decb07dc056c415af9cac 451 SMART SM00729 48 269 3.2E-51 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMK58_12040 e0966c4dfd2decb07dc056c415af9cac 451 PIRSF PIRSF000167 1 451 1.3E-163 T 11-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 AMK58_12040 e0966c4dfd2decb07dc056c415af9cac 451 SUPERFAMILY SSF102114 6 440 1.03E-121 T 11-10-2018 AMK58_05655 0342ed85b739b007383f0156ee1049e2 272 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 19 240 3.6E-107 T 11-10-2018 IPR022488 Polyphosphate kinase-2-related AMK58_05655 0342ed85b739b007383f0156ee1049e2 272 PIRSF PIRSF028756 11 272 1.1E-125 T 11-10-2018 IPR016898 Polyphosphate kinase 2 KEGG: 00190+2.7.4.1 AMK58_05655 0342ed85b739b007383f0156ee1049e2 272 TIGRFAM TIGR03707 PPK2_P_aer: polyphosphate kinase 2 19 241 1.4E-113 T 11-10-2018 IPR022486 Polyphosphate kinase 2, PA0141 GO:0006793|GO:0008976 KEGG: 00190+2.7.4.1 AMK58_05655 0342ed85b739b007383f0156ee1049e2 272 Gene3D G3DSA:3.40.50.300 10 248 2.6E-94 T 11-10-2018 AMK58_05655 0342ed85b739b007383f0156ee1049e2 272 SUPERFAMILY SSF52540 48 237 5.63E-33 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_28005 cc071a5bc56cb20e77eb758673409ed4 244 Gene3D G3DSA:1.10.150.130 75 181 8.7E-20 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal AMK58_28005 cc071a5bc56cb20e77eb758673409ed4 244 SUPERFAMILY SSF47823 86 180 3.14E-22 T 11-10-2018 AMK58_27580 27d07c6b0c40e605771104de778a0ff1 111 PIRSF PIRSF029883 3 111 3.6E-35 T 11-10-2018 IPR025499 Pectin degradation protein KdgF AMK58_27580 27d07c6b0c40e605771104de778a0ff1 111 Pfam PF07883 Cupin domain 36 102 3.2E-13 T 11-10-2018 IPR013096 Cupin 2, conserved barrel AMK58_27580 27d07c6b0c40e605771104de778a0ff1 111 SUPERFAMILY SSF51182 7 108 3.75E-23 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily AMK58_27580 27d07c6b0c40e605771104de778a0ff1 111 Gene3D G3DSA:2.60.120.10 2 111 7.2E-34 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_19475 5865d5b3efb8299d5459d0e3b69ed69b 256 Pfam PF02108 Flagellar assembly protein FliH 107 249 2.2E-34 T 11-10-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE AMK58_28030 7d9fdfe8bf41f5a9b0a154260ce319d8 278 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 133 161 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMK58_28030 7d9fdfe8bf41f5a9b0a154260ce319d8 278 Gene3D G3DSA:3.40.50.720 1 275 1.1E-81 T 11-10-2018 AMK58_28030 7d9fdfe8bf41f5a9b0a154260ce319d8 278 SUPERFAMILY SSF51735 2 247 1.73E-63 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_28030 7d9fdfe8bf41f5a9b0a154260ce319d8 278 Pfam PF00106 short chain dehydrogenase 3 184 1.1E-49 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_28030 7d9fdfe8bf41f5a9b0a154260ce319d8 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 1.2E-26 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_28030 7d9fdfe8bf41f5a9b0a154260ce319d8 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 1.2E-26 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_28030 7d9fdfe8bf41f5a9b0a154260ce319d8 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 1.2E-26 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_28030 7d9fdfe8bf41f5a9b0a154260ce319d8 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 1.2E-26 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_28030 7d9fdfe8bf41f5a9b0a154260ce319d8 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 1.2E-26 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_28030 7d9fdfe8bf41f5a9b0a154260ce319d8 278 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 134 9.3E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_28030 7d9fdfe8bf41f5a9b0a154260ce319d8 278 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 165 9.3E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_28030 7d9fdfe8bf41f5a9b0a154260ce319d8 278 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 73 84 9.3E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_00430 67af7d3e2b870573c9d9778ce0a139de 142 Pfam PF03653 Uncharacterised protein family (UPF0093) 2 142 1.3E-60 T 11-10-2018 IPR005265 Uncharacterised protein family UPF0093 AMK58_00430 67af7d3e2b870573c9d9778ce0a139de 142 TIGRFAM TIGR00701 TIGR00701: TIGR00701 family protein 3 142 9.5E-54 T 11-10-2018 IPR005265 Uncharacterised protein family UPF0093 AMK58_00430 67af7d3e2b870573c9d9778ce0a139de 142 PIRSF PIRSF004638 1 142 6.1E-60 T 11-10-2018 IPR005265 Uncharacterised protein family UPF0093 AMK58_17515 86886a0abc0f4eebfc219acd95ccc07b 485 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 374 400 1.8E-9 T 11-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_17515 86886a0abc0f4eebfc219acd95ccc07b 485 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 233 257 1.8E-9 T 11-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_17515 86886a0abc0f4eebfc219acd95ccc07b 485 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 322 341 1.8E-9 T 11-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_17515 86886a0abc0f4eebfc219acd95ccc07b 485 Pfam PF00361 Proton-conducting membrane transporter 118 413 1.7E-49 T 11-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_03515 6ff6c866d65f79ba9de31990607b0c25 583 SMART SM00564 284 311 23.0 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMK58_03515 6ff6c866d65f79ba9de31990607b0c25 583 SMART SM00564 91 122 8.1E-5 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMK58_03515 6ff6c866d65f79ba9de31990607b0c25 583 SMART SM00564 140 171 7.8E-5 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMK58_03515 6ff6c866d65f79ba9de31990607b0c25 583 SMART SM00564 493 525 2.0E-5 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMK58_03515 6ff6c866d65f79ba9de31990607b0c25 583 SMART SM00564 442 484 0.036 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMK58_03515 6ff6c866d65f79ba9de31990607b0c25 583 SMART SM00564 185 222 0.11 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMK58_03515 6ff6c866d65f79ba9de31990607b0c25 583 Gene3D G3DSA:2.140.10.10 31 583 1.5E-224 T 11-10-2018 AMK58_03515 6ff6c866d65f79ba9de31990607b0c25 583 Pfam PF01011 PQQ enzyme repeat 499 535 2.9E-10 T 11-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat AMK58_03515 6ff6c866d65f79ba9de31990607b0c25 583 SUPERFAMILY SSF50998 35 576 1.31E-168 T 11-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily AMK58_03515 6ff6c866d65f79ba9de31990607b0c25 583 TIGRFAM TIGR03075 PQQ_enz_alc_DH: PQQ-dependent dehydrogenase, methanol/ethanol family 31 553 5.9E-244 T 11-10-2018 IPR017512 PQQ-dependent dehydrogenase, methanol/ethanol family GO:0005509|GO:0016020|GO:0016614|GO:0055114 AMK58_03515 6ff6c866d65f79ba9de31990607b0c25 583 Pfam PF13360 PQQ-like domain 74 309 4.0E-20 T 11-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat AMK58_06185 78dfcff1dbf79cfc49342d5b753ae30c 257 Gene3D G3DSA:3.30.420.40 1 88 9.0E-28 T 11-10-2018 AMK58_06185 78dfcff1dbf79cfc49342d5b753ae30c 257 Hamap MF_01274 Type III pantothenate kinase [coaX]. 1 255 35.423 T 11-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 AMK58_06185 78dfcff1dbf79cfc49342d5b753ae30c 257 SUPERFAMILY SSF53067 125 254 2.05E-40 T 11-10-2018 AMK58_06185 78dfcff1dbf79cfc49342d5b753ae30c 257 Gene3D G3DSA:3.30.420.40 90 257 1.0E-58 T 11-10-2018 AMK58_06185 78dfcff1dbf79cfc49342d5b753ae30c 257 Pfam PF03309 Type III pantothenate kinase 2 207 4.0E-70 T 11-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 AMK58_06185 78dfcff1dbf79cfc49342d5b753ae30c 257 SUPERFAMILY SSF53067 1 122 8.27E-32 T 11-10-2018 AMK58_06185 78dfcff1dbf79cfc49342d5b753ae30c 257 TIGRFAM TIGR00671 baf: pantothenate kinase, type III 2 248 1.6E-69 T 11-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 AMK58_12810 6338b894096dabd0d03d9103f9ea55a0 298 Gene3D G3DSA:3.40.50.150 33 265 8.7E-22 T 11-10-2018 AMK58_12810 6338b894096dabd0d03d9103f9ea55a0 298 SUPERFAMILY SSF53335 35 220 1.47E-27 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_12810 6338b894096dabd0d03d9103f9ea55a0 298 Pfam PF08241 Methyltransferase domain 55 142 3.8E-11 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 AMK58_06015 a95db25cfa38458f3ef9ba1aa300116e 82 Pfam PF06568 Domain of unknown function (DUF1127) 44 71 3.3E-12 T 11-10-2018 IPR009506 Protein of unknown function DUF1127 AMK58_10890 a7b9fe80dda281a9ce2ec287b5f7b39d 621 Gene3D G3DSA:1.20.58.1830 18 34 1.1E-5 T 11-10-2018 AMK58_10890 a7b9fe80dda281a9ce2ec287b5f7b39d 621 Gene3D G3DSA:1.20.1330.10 46 185 1.1E-5 T 11-10-2018 AMK58_10890 a7b9fe80dda281a9ce2ec287b5f7b39d 621 Gene3D G3DSA:2.30.220.10 200 296 1.1E-5 T 11-10-2018 AMK58_10890 a7b9fe80dda281a9ce2ec287b5f7b39d 621 SUPERFAMILY SSF64518 302 621 6.93E-13 T 11-10-2018 AMK58_10890 a7b9fe80dda281a9ce2ec287b5f7b39d 621 Pfam PF00669 Bacterial flagellin N-terminal helical region 4 146 3.5E-13 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 AMK58_10890 a7b9fe80dda281a9ce2ec287b5f7b39d 621 SUPERFAMILY SSF64518 6 331 9.68E-23 T 11-10-2018 AMK58_10890 a7b9fe80dda281a9ce2ec287b5f7b39d 621 Gene3D G3DSA:2.170.280.10 186 376 1.1E-5 T 11-10-2018 AMK58_11325 d116fdafe2cbc811945fceb93e24a4c0 449 SUPERFAMILY SSF55681 6 349 1.82E-74 T 11-10-2018 AMK58_11325 d116fdafe2cbc811945fceb93e24a4c0 449 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 8 435 1.2E-120 T 11-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 AMK58_11325 d116fdafe2cbc811945fceb93e24a4c0 449 Pfam PF13393 Histidyl-tRNA synthetase 11 337 9.6E-37 T 11-10-2018 AMK58_11325 d116fdafe2cbc811945fceb93e24a4c0 449 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 4 445 27.346 T 11-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 AMK58_11325 d116fdafe2cbc811945fceb93e24a4c0 449 Gene3D G3DSA:3.30.930.10 2 350 7.1E-108 T 11-10-2018 AMK58_11325 d116fdafe2cbc811945fceb93e24a4c0 449 SUPERFAMILY SSF52954 354 447 1.13E-21 T 11-10-2018 AMK58_11325 d116fdafe2cbc811945fceb93e24a4c0 449 Gene3D G3DSA:3.40.50.800 353 447 1.1E-24 T 11-10-2018 IPR036621 Anticodon-binding domain superfamily AMK58_11325 d116fdafe2cbc811945fceb93e24a4c0 449 Pfam PF03129 Anticodon binding domain 357 445 8.5E-14 T 11-10-2018 IPR004154 Anticodon-binding AMK58_11325 d116fdafe2cbc811945fceb93e24a4c0 449 PIRSF PIRSF001549 2 447 5.7E-132 T 11-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 AMK58_16045 5a39b3355077afc2146e1b9c6402ddf5 125 SMART SM00448 7 120 1.4E-35 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_16045 5a39b3355077afc2146e1b9c6402ddf5 125 Gene3D G3DSA:3.40.50.12740 6 125 2.4E-44 T 11-10-2018 AMK58_16045 5a39b3355077afc2146e1b9c6402ddf5 125 SUPERFAMILY SSF52172 7 125 9.53E-37 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_16045 5a39b3355077afc2146e1b9c6402ddf5 125 Pfam PF00072 Response regulator receiver domain 9 120 5.2E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_09390 bbfbee11b200925350cf2c209c7ca88b 439 Gene3D G3DSA:3.30.1330.60 244 439 1.9E-43 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMK58_09390 bbfbee11b200925350cf2c209c7ca88b 439 Pfam PF00691 OmpA family 325 430 2.8E-19 T 11-10-2018 IPR006665 OmpA-like domain AMK58_09390 bbfbee11b200925350cf2c209c7ca88b 439 SUPERFAMILY SSF103088 302 435 1.28E-29 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMK58_01540 a5a6dbe926d8f90e1c2c04f5d3348d2d 229 Gene3D G3DSA:3.40.50.300 7 198 3.1E-42 T 11-10-2018 AMK58_01540 a5a6dbe926d8f90e1c2c04f5d3348d2d 229 Pfam PF00005 ABC transporter 21 160 5.9E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_01540 a5a6dbe926d8f90e1c2c04f5d3348d2d 229 SUPERFAMILY SSF52540 9 195 1.93E-42 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_01540 a5a6dbe926d8f90e1c2c04f5d3348d2d 229 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 6 203 4.6E-63 T 11-10-2018 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004 AMK58_01540 a5a6dbe926d8f90e1c2c04f5d3348d2d 229 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_01540 a5a6dbe926d8f90e1c2c04f5d3348d2d 229 SMART SM00382 28 207 2.2E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_29095 ad5f4b6f93c099bbf0c236540d10c247 180 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 4 153 2.5E-33 T 11-10-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 AMK58_29095 ad5f4b6f93c099bbf0c236540d10c247 180 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 4 149 5.1E-29 T 11-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 AMK58_29095 ad5f4b6f93c099bbf0c236540d10c247 180 SUPERFAMILY SSF56784 1 178 1.04E-40 T 11-10-2018 IPR036412 HAD-like superfamily AMK58_29095 ad5f4b6f93c099bbf0c236540d10c247 180 Gene3D G3DSA:3.40.50.1000 1 179 1.3E-47 T 11-10-2018 IPR023214 HAD superfamily AMK58_29095 ad5f4b6f93c099bbf0c236540d10c247 180 PIRSF PIRSF004682 1 179 3.0E-51 T 11-10-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 AMK58_29095 ad5f4b6f93c099bbf0c236540d10c247 180 TIGRFAM TIGR00213 GmhB_yaeD: D,D-heptose 1,7-bisphosphate phosphatase 4 164 4.7E-50 T 11-10-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 AMK58_29095 ad5f4b6f93c099bbf0c236540d10c247 180 Pfam PF13242 HAD-hyrolase-like 107 148 2.6E-8 T 11-10-2018 AMK58_22470 edc80ecd8946b47c69aa6878887fac44 404 SMART SM00729 57 278 0.0037 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMK58_22470 edc80ecd8946b47c69aa6878887fac44 404 SUPERFAMILY SSF47781 302 374 1.11E-9 T 11-10-2018 IPR010994 RuvA domain 2-like AMK58_22470 edc80ecd8946b47c69aa6878887fac44 404 SUPERFAMILY SSF102114 45 256 7.85E-13 T 11-10-2018 AMK58_22470 edc80ecd8946b47c69aa6878887fac44 404 TIGRFAM TIGR03916 rSAM_link_UDG: putative DNA modification/repair radical SAM protein 6 399 1.5E-164 T 11-10-2018 IPR023874 DNA modification/repair radical SAM protein, putative AMK58_22470 edc80ecd8946b47c69aa6878887fac44 404 Gene3D G3DSA:3.20.20.70 52 158 2.3E-6 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_10965 b629eafd1fa1195851a3fd4ceb4e433a 201 Pfam PF11233 Protein of unknown function (DUF3035) 38 179 3.1E-47 T 11-10-2018 IPR021395 Protein of unknown function DUF3035 AMK58_12550 c4cbb5bad6fd04f95387c7b3fac6839c 342 Gene3D G3DSA:3.40.190.10 30 305 8.8E-134 T 11-10-2018 AMK58_12550 c4cbb5bad6fd04f95387c7b3fac6839c 342 PIRSF PIRSF002825 6 342 1.4E-92 T 11-10-2018 IPR026045 Ferric binding protein AMK58_12550 c4cbb5bad6fd04f95387c7b3fac6839c 342 Gene3D G3DSA:3.40.190.10 128 340 8.8E-134 T 11-10-2018 AMK58_12550 c4cbb5bad6fd04f95387c7b3fac6839c 342 Pfam PF13343 Bacterial extracellular solute-binding protein 75 309 1.9E-28 T 11-10-2018 AMK58_12550 c4cbb5bad6fd04f95387c7b3fac6839c 342 SUPERFAMILY SSF53850 28 338 4.78E-88 T 11-10-2018 AMK58_21435 a1ab379b26cc8017222276c1655c6002 302 SUPERFAMILY SSF46785 5 90 3.53E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_21435 a1ab379b26cc8017222276c1655c6002 302 Gene3D G3DSA:3.40.190.10 166 267 3.4E-54 T 11-10-2018 AMK58_21435 a1ab379b26cc8017222276c1655c6002 302 Pfam PF03466 LysR substrate binding domain 90 294 2.9E-39 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_21435 a1ab379b26cc8017222276c1655c6002 302 SUPERFAMILY SSF53850 91 295 8.07E-43 T 11-10-2018 AMK58_21435 a1ab379b26cc8017222276c1655c6002 302 Gene3D G3DSA:3.40.190.10 94 292 3.4E-54 T 11-10-2018 AMK58_21435 a1ab379b26cc8017222276c1655c6002 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 4.0E-21 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_21435 a1ab379b26cc8017222276c1655c6002 302 Gene3D G3DSA:1.10.10.10 5 90 7.6E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_16375 6a33dc959d3525d6ca07e43b11485254 157 Pfam PF11911 Protein of unknown function (DUF3429) 13 152 1.2E-34 T 11-10-2018 IPR021836 Protein of unknown function DUF3429 AMK58_11335 6db6fb39bc3cbc17cb41034e434e7688 1008 Pfam PF00912 Transglycosylase 130 332 1.2E-24 T 11-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMK58_11335 6db6fb39bc3cbc17cb41034e434e7688 1008 SUPERFAMILY SSF56601 718 993 7.66E-26 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMK58_11335 6db6fb39bc3cbc17cb41034e434e7688 1008 Gene3D G3DSA:3.40.710.10 782 1003 5.6E-15 T 11-10-2018 AMK58_11335 6db6fb39bc3cbc17cb41034e434e7688 1008 Gene3D G3DSA:1.10.3810.10 120 357 1.9E-5 T 11-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMK58_11335 6db6fb39bc3cbc17cb41034e434e7688 1008 SUPERFAMILY SSF53955 137 354 2.17E-7 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily AMK58_10690 74abe603a5ac045c5c8d340b37ee6260 319 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 189 205 - T 11-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AMK58_10690 74abe603a5ac045c5c8d340b37ee6260 319 Gene3D G3DSA:3.30.160.20 170 265 1.7E-98 T 11-10-2018 AMK58_10690 74abe603a5ac045c5c8d340b37ee6260 319 SMART SM00937 29 139 8.1E-52 T 11-10-2018 IPR005139 Peptide chain release factor GO:0006415 AMK58_10690 74abe603a5ac045c5c8d340b37ee6260 319 SUPERFAMILY SSF75620 1 310 1.19E-121 T 11-10-2018 AMK58_10690 74abe603a5ac045c5c8d340b37ee6260 319 Gene3D G3DSA:3.30.70.1660 74 303 1.7E-98 T 11-10-2018 AMK58_10690 74abe603a5ac045c5c8d340b37ee6260 319 Gene3D G3DSA:1.20.58.410 1 60 1.9E-7 T 11-10-2018 AMK58_10690 74abe603a5ac045c5c8d340b37ee6260 319 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 2 309 1.4E-143 T 11-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 AMK58_10690 74abe603a5ac045c5c8d340b37ee6260 319 Pfam PF03462 PCRF domain 1 164 5.3E-52 T 11-10-2018 IPR005139 Peptide chain release factor GO:0006415 AMK58_10690 74abe603a5ac045c5c8d340b37ee6260 319 Hamap MF_00094 Peptide chain release factor 2 [prfB]. 1 310 33.195 T 11-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 AMK58_10690 74abe603a5ac045c5c8d340b37ee6260 319 Pfam PF00472 RF-1 domain 172 282 9.5E-43 T 11-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AMK58_25410 b63488cac4f9cdcf2c5ed223e8d3ee15 89 Pfam PF11747 Killing trait 11 78 2.4E-30 T 11-10-2018 IPR021070 Killing trait, RebB AMK58_01545 2106d1f089ed68708afedbd9272637ac 221 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 157 176 9.6E-68 T 11-10-2018 AMK58_01545 2106d1f089ed68708afedbd9272637ac 221 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 77 100 9.6E-68 T 11-10-2018 AMK58_01545 2106d1f089ed68708afedbd9272637ac 221 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 194 217 9.6E-68 T 11-10-2018 AMK58_01545 2106d1f089ed68708afedbd9272637ac 221 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 28 49 9.6E-68 T 11-10-2018 AMK58_01545 2106d1f089ed68708afedbd9272637ac 221 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 102 120 9.6E-68 T 11-10-2018 AMK58_01545 2106d1f089ed68708afedbd9272637ac 221 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 54 71 9.6E-68 T 11-10-2018 AMK58_01545 2106d1f089ed68708afedbd9272637ac 221 PIRSF PIRSF002764 1 221 1.6E-82 T 11-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria AMK58_01545 2106d1f089ed68708afedbd9272637ac 221 TIGRFAM TIGR01190 ccmB: heme exporter protein CcmB 7 217 2.3E-84 T 11-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria AMK58_01545 2106d1f089ed68708afedbd9272637ac 221 Pfam PF03379 CcmB protein 5 217 3.8E-83 T 11-10-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMK58_16195 ab27bdf0603c0227f508cf54a6152e94 100 Pfam PF13683 Integrase core domain 18 82 3.2E-8 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMK58_16195 ab27bdf0603c0227f508cf54a6152e94 100 SUPERFAMILY SSF53098 19 91 3.79E-6 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMK58_03725 5aa34b9e5a604382174c89999de6a970 623 Pfam PF01627 Hpt domain 534 617 1.2E-9 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMK58_03725 5aa34b9e5a604382174c89999de6a970 623 SMART SM00448 368 485 1.5E-35 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_03725 5aa34b9e5a604382174c89999de6a970 623 SUPERFAMILY SSF47226 510 620 4.45E-16 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMK58_03725 5aa34b9e5a604382174c89999de6a970 623 Pfam PF00072 Response regulator receiver domain 370 483 6.8E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_03725 5aa34b9e5a604382174c89999de6a970 623 SUPERFAMILY SSF52172 366 488 7.97E-36 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_03725 5aa34b9e5a604382174c89999de6a970 623 Gene3D G3DSA:1.20.120.160 509 621 1.4E-13 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMK58_03725 5aa34b9e5a604382174c89999de6a970 623 Gene3D G3DSA:3.40.50.2300 358 490 1.1E-37 T 11-10-2018 AMK58_21410 2d8d699415a5ca818f60dd1a166ef9c1 554 TIGRFAM TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D 315 543 3.1E-96 T 11-10-2018 IPR005890 Nitrate transport ATP-binding subunit C/D GO:0015112|GO:0015706|GO:0016020 AMK58_21410 2d8d699415a5ca818f60dd1a166ef9c1 554 SMART SM00382 28 210 2.4E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_21410 2d8d699415a5ca818f60dd1a166ef9c1 554 SMART SM00382 323 505 9.6E-18 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_21410 2d8d699415a5ca818f60dd1a166ef9c1 554 Gene3D G3DSA:3.40.50.300 293 545 1.4E-58 T 11-10-2018 AMK58_21410 2d8d699415a5ca818f60dd1a166ef9c1 554 Gene3D G3DSA:3.40.50.300 1 236 7.1E-59 T 11-10-2018 AMK58_21410 2d8d699415a5ca818f60dd1a166ef9c1 554 SUPERFAMILY SSF52540 3 229 6.34E-64 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_21410 2d8d699415a5ca818f60dd1a166ef9c1 554 Pfam PF00005 ABC transporter 315 455 7.1E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_21410 2d8d699415a5ca818f60dd1a166ef9c1 554 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_21410 2d8d699415a5ca818f60dd1a166ef9c1 554 SUPERFAMILY SSF52540 295 515 2.41E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_21410 2d8d699415a5ca818f60dd1a166ef9c1 554 Pfam PF00005 ABC transporter 19 160 2.1E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_22080 8c424cd70cf6428e61d1f25d175f8b00 503 SMART SM00849 55 257 1.7E-23 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMK58_22080 8c424cd70cf6428e61d1f25d175f8b00 503 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 397 441 2.3E-7 T 11-10-2018 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain AMK58_22080 8c424cd70cf6428e61d1f25d175f8b00 503 Gene3D G3DSA:3.40.50.10710 242 391 1.5E-153 T 11-10-2018 AMK58_22080 8c424cd70cf6428e61d1f25d175f8b00 503 Gene3D G3DSA:3.60.15.10 45 470 1.5E-153 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMK58_22080 8c424cd70cf6428e61d1f25d175f8b00 503 Pfam PF12706 Beta-lactamase superfamily domain 67 203 1.3E-11 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMK58_22080 8c424cd70cf6428e61d1f25d175f8b00 503 SUPERFAMILY SSF56281 45 456 1.48E-80 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMK58_03320 db06b4ba16ff93e818bd26ea6897cbf2 163 Gene3D G3DSA:3.30.450.20 36 163 4.7E-21 T 11-10-2018 AMK58_03320 db06b4ba16ff93e818bd26ea6897cbf2 163 Pfam PF17200 Single Cache domain 2 63 162 1.3E-15 T 11-10-2018 IPR033480 Single Cache domain 2 AMK58_03320 db06b4ba16ff93e818bd26ea6897cbf2 163 SMART SM01049 31 114 1.3E-5 T 11-10-2018 IPR033480 Single Cache domain 2 AMK58_18245 e5320f0940b79bfbe883ba2d34b3b71d 265 Gene3D G3DSA:3.40.630.40 38 262 5.4E-67 T 11-10-2018 AMK58_18245 e5320f0940b79bfbe883ba2d34b3b71d 265 SMART SM00646 102 256 6.3E-40 T 11-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 AMK58_18245 e5320f0940b79bfbe883ba2d34b3b71d 265 SUPERFAMILY SSF53187 40 255 7.53E-48 T 11-10-2018 AMK58_18245 e5320f0940b79bfbe883ba2d34b3b71d 265 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 42 255 2.6E-45 T 11-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 AMK58_01230 dfb19545fa25b7d24d9ba58b484ec006 278 Gene3D G3DSA:2.40.50.90 24 159 1.6E-19 T 11-10-2018 IPR035437 SNase-like, OB-fold superfamily AMK58_01230 dfb19545fa25b7d24d9ba58b484ec006 278 Pfam PF00565 Staphylococcal nuclease homologue 45 150 4.9E-9 T 11-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 AMK58_01230 dfb19545fa25b7d24d9ba58b484ec006 278 SUPERFAMILY SSF50199 26 151 4.32E-21 T 11-10-2018 AMK58_01230 dfb19545fa25b7d24d9ba58b484ec006 278 SMART SM00318 21 151 2.3E-5 T 11-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 AMK58_11500 5172f65bf5fbb4301fe46b930fa482f6 256 SUPERFAMILY SSF75217 16 172 2.68E-30 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases AMK58_11500 5172f65bf5fbb4301fe46b930fa482f6 256 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 17 248 3.0E-50 T 11-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 AMK58_11500 5172f65bf5fbb4301fe46b930fa482f6 256 PIRSF PIRSF004808 12 255 8.9E-76 T 11-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 AMK58_11500 5172f65bf5fbb4301fe46b930fa482f6 256 Pfam PF00588 SpoU rRNA Methylase family 17 167 3.9E-27 T 11-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AMK58_11500 5172f65bf5fbb4301fe46b930fa482f6 256 Gene3D G3DSA:1.10.8.590 178 256 7.1E-11 T 11-10-2018 AMK58_11500 5172f65bf5fbb4301fe46b930fa482f6 256 Gene3D G3DSA:3.40.1280.10 13 176 2.0E-51 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMK58_08505 2d7c967bcc4cfc749ea2c2377ad2b2aa 174 PIRSF PIRSF006135 4 172 5.3E-54 T 11-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 AMK58_08505 2d7c967bcc4cfc749ea2c2377ad2b2aa 174 Gene3D G3DSA:3.40.50.300 5 170 7.2E-56 T 11-10-2018 AMK58_08505 2d7c967bcc4cfc749ea2c2377ad2b2aa 174 Pfam PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase 6 167 6.6E-60 T 11-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 AMK58_08505 2d7c967bcc4cfc749ea2c2377ad2b2aa 174 SUPERFAMILY SSF52540 5 170 1.7E-53 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_07465 9e188d9b10da4275a38b510ecf064351 157 SUPERFAMILY SSF46785 7 142 1.89E-24 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_07465 9e188d9b10da4275a38b510ecf064351 157 ProSitePatterns PS01117 MarR-type HTH domain signature. 66 100 - T 11-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site AMK58_07465 9e188d9b10da4275a38b510ecf064351 157 Pfam PF13463 Winged helix DNA-binding domain 36 100 1.5E-13 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_07465 9e188d9b10da4275a38b510ecf064351 157 Gene3D G3DSA:1.10.10.10 6 141 3.0E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_07465 9e188d9b10da4275a38b510ecf064351 157 SMART SM00347 28 128 3.6E-10 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_01320 b34d1aaa73a3497bdfc54b079f6d6fff 438 TIGRFAM TIGR00836 amt: ammonium transporter 43 436 3.2E-141 T 11-10-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 AMK58_01320 b34d1aaa73a3497bdfc54b079f6d6fff 438 SUPERFAMILY SSF111352 39 419 9.81E-135 T 11-10-2018 AMK58_01320 b34d1aaa73a3497bdfc54b079f6d6fff 438 ProSitePatterns PS01219 Ammonium transporters signature. 195 220 - T 11-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 AMK58_01320 b34d1aaa73a3497bdfc54b079f6d6fff 438 Pfam PF00909 Ammonium Transporter Family 45 436 2.0E-124 T 11-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 AMK58_01320 b34d1aaa73a3497bdfc54b079f6d6fff 438 Gene3D G3DSA:1.10.3430.10 20 438 2.2E-145 T 11-10-2018 IPR029020 Ammonium/urea transporter AMK58_03730 a60591865dd874c58839afa88d3aed7b 160 PIRSF PIRSF031796 5 158 3.3E-52 T 11-10-2018 IPR009394 DNA repair protein MmcB-like AMK58_03730 a60591865dd874c58839afa88d3aed7b 160 Pfam PF06319 DNA repair protein MmcB-like 18 151 1.0E-56 T 11-10-2018 IPR009394 DNA repair protein MmcB-like AMK58_03730 a60591865dd874c58839afa88d3aed7b 160 Gene3D G3DSA:3.40.1350.10 13 157 1.6E-58 T 11-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 AMK58_26030 209198042a48b9bb500cde43aa02eeea 161 SMART SM00347 36 136 1.8E-21 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_26030 209198042a48b9bb500cde43aa02eeea 161 PRINTS PR00598 Bacterial regulatory protein MarR family signature 60 76 2.4E-5 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_26030 209198042a48b9bb500cde43aa02eeea 161 PRINTS PR00598 Bacterial regulatory protein MarR family signature 96 112 2.4E-5 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_26030 209198042a48b9bb500cde43aa02eeea 161 PRINTS PR00598 Bacterial regulatory protein MarR family signature 77 92 2.4E-5 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_26030 209198042a48b9bb500cde43aa02eeea 161 Pfam PF01047 MarR family 44 99 1.9E-12 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_26030 209198042a48b9bb500cde43aa02eeea 161 ProSitePatterns PS01117 MarR-type HTH domain signature. 76 109 - T 11-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site AMK58_26030 209198042a48b9bb500cde43aa02eeea 161 SUPERFAMILY SSF46785 14 151 1.06E-30 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_26030 209198042a48b9bb500cde43aa02eeea 161 Gene3D G3DSA:1.10.10.10 11 153 3.1E-33 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_24060 1dc2006c4cad59e3f8fe9eba3a21288e 353 Gene3D G3DSA:2.40.30.170 38 272 4.2E-67 T 11-10-2018 AMK58_24060 1dc2006c4cad59e3f8fe9eba3a21288e 353 Gene3D G3DSA:1.10.287.470 82 147 4.2E-67 T 11-10-2018 AMK58_24060 1dc2006c4cad59e3f8fe9eba3a21288e 353 Gene3D G3DSA:2.40.50.100 48 194 4.2E-67 T 11-10-2018 AMK58_24060 1dc2006c4cad59e3f8fe9eba3a21288e 353 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 29 347 3.6E-74 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMK58_24060 1dc2006c4cad59e3f8fe9eba3a21288e 353 SUPERFAMILY SSF111369 38 262 1.15E-23 T 11-10-2018 AMK58_24060 1dc2006c4cad59e3f8fe9eba3a21288e 353 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 36 256 2.3E-17 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMK58_24060 1dc2006c4cad59e3f8fe9eba3a21288e 353 Gene3D G3DSA:2.40.420.20 273 345 4.2E-67 T 11-10-2018 AMK58_07935 3967c941cf443322ef4b856ca831e000 152 SUPERFAMILY SSF54690 3 148 1.57E-49 T 11-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 AMK58_07935 3967c941cf443322ef4b856ca831e000 152 Pfam PF02391 MoaE protein 6 119 2.9E-34 T 11-10-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 AMK58_07935 3967c941cf443322ef4b856ca831e000 152 Gene3D G3DSA:3.90.1170.40 1 148 4.8E-49 T 11-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 AMK58_05480 0aa6fb0aec4e3aa50e790ec0b616a7ed 62 Pfam PF09838 Uncharacterized protein conserved in bacteria (DUF2065) 4 59 6.0E-21 T 11-10-2018 IPR019201 Protein of unknown function DUF2065 AMK58_00080 238ce45533d09aff333b48735b68285e 310 Pfam PF04796 Plasmid encoded RepA protein 93 246 4.6E-49 T 11-10-2018 IPR006881 Plasmid encoded RepA protein AMK58_03325 d558ab8b23a7a1e4c1b3ed767f034d5c 155 ProSitePatterns PS00819 Dps protein family signature 2. 63 77 - T 11-10-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 AMK58_03325 d558ab8b23a7a1e4c1b3ed767f034d5c 155 Gene3D G3DSA:1.20.1260.10 1 155 2.0E-60 T 11-10-2018 IPR012347 Ferritin-like AMK58_03325 d558ab8b23a7a1e4c1b3ed767f034d5c 155 SUPERFAMILY SSF47240 5 155 7.88E-51 T 11-10-2018 IPR009078 Ferritin-like superfamily AMK58_03325 d558ab8b23a7a1e4c1b3ed767f034d5c 155 Pfam PF00210 Ferritin-like domain 17 155 7.6E-32 T 11-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 AMK58_03325 d558ab8b23a7a1e4c1b3ed767f034d5c 155 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 37 53 2.0E-11 T 11-10-2018 IPR002177 DNA-binding protein Dps AMK58_03325 d558ab8b23a7a1e4c1b3ed767f034d5c 155 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 61 77 2.0E-11 T 11-10-2018 IPR002177 DNA-binding protein Dps AMK58_03325 d558ab8b23a7a1e4c1b3ed767f034d5c 155 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 132 150 2.0E-11 T 11-10-2018 IPR002177 DNA-binding protein Dps AMK58_03325 d558ab8b23a7a1e4c1b3ed767f034d5c 155 PIRSF PIRSF005900 1 155 1.4E-48 T 11-10-2018 IPR002177 DNA-binding protein Dps AMK58_16365 c4731c800c18db224ebf4bec802d5288 383 Pfam PF07690 Major Facilitator Superfamily 9 322 2.3E-37 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMK58_16365 c4731c800c18db224ebf4bec802d5288 383 SUPERFAMILY SSF103473 2 381 2.35E-53 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_16365 c4731c800c18db224ebf4bec802d5288 383 Gene3D G3DSA:1.20.1250.20 2 377 7.0E-52 T 11-10-2018 AMK58_20240 9870a656257373f95790a481f8e602bb 672 Pfam PF05170 AsmA family 296 539 1.3E-22 T 11-10-2018 IPR007844 AsmA AMK58_20240 9870a656257373f95790a481f8e602bb 672 Pfam PF05170 AsmA family 7 168 1.5E-20 T 11-10-2018 IPR007844 AsmA AMK58_18935 14c87541f97a1e77bb11a9ff4bacf8d2 433 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 302 325 - T 11-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site AMK58_18935 14c87541f97a1e77bb11a9ff4bacf8d2 433 PRINTS PR00173 Glutamate-aspartate symporter signature 334 353 1.3E-24 T 11-10-2018 AMK58_18935 14c87541f97a1e77bb11a9ff4bacf8d2 433 PRINTS PR00173 Glutamate-aspartate symporter signature 299 325 1.3E-24 T 11-10-2018 AMK58_18935 14c87541f97a1e77bb11a9ff4bacf8d2 433 PRINTS PR00173 Glutamate-aspartate symporter signature 81 106 1.3E-24 T 11-10-2018 AMK58_18935 14c87541f97a1e77bb11a9ff4bacf8d2 433 PRINTS PR00173 Glutamate-aspartate symporter signature 152 174 1.3E-24 T 11-10-2018 AMK58_18935 14c87541f97a1e77bb11a9ff4bacf8d2 433 PRINTS PR00173 Glutamate-aspartate symporter signature 14 34 1.3E-24 T 11-10-2018 AMK58_18935 14c87541f97a1e77bb11a9ff4bacf8d2 433 SUPERFAMILY SSF118215 16 409 7.98E-120 T 11-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 AMK58_18935 14c87541f97a1e77bb11a9ff4bacf8d2 433 Pfam PF00375 Sodium:dicarboxylate symporter family 16 408 5.5E-110 T 11-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AMK58_18935 14c87541f97a1e77bb11a9ff4bacf8d2 433 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 43 58 - T 11-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site AMK58_18935 14c87541f97a1e77bb11a9ff4bacf8d2 433 Gene3D G3DSA:1.10.3860.10 5 427 6.8E-127 T 11-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 AMK58_03270 18af1d3b858ebed3b3643c1e312f1c04 171 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 1 133 9.2E-7 T 11-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 AMK58_03270 18af1d3b858ebed3b3643c1e312f1c04 171 Gene3D G3DSA:3.60.21.10 1 169 1.4E-48 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like AMK58_03270 18af1d3b858ebed3b3643c1e312f1c04 171 SUPERFAMILY SSF56300 1 141 7.94E-17 T 11-10-2018 AMK58_13395 c02433a5deb56c42e2e73a46b033f9ad 128 SUPERFAMILY SSF46689 1 111 1.97E-23 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_13395 c02433a5deb56c42e2e73a46b033f9ad 128 Pfam PF01710 Transposase 4 120 5.8E-8 T 11-10-2018 IPR002622 Transposase, Synechocystis PCC 6803 AMK58_23890 7dbf284dc1bec98d00309ce09108379c 197 SUPERFAMILY SSF53335 22 195 8.29E-32 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_23890 7dbf284dc1bec98d00309ce09108379c 197 Pfam PF13578 Methyltransferase domain 56 159 2.8E-19 T 11-10-2018 AMK58_23890 7dbf284dc1bec98d00309ce09108379c 197 Gene3D G3DSA:3.40.50.150 6 196 3.1E-42 T 11-10-2018 AMK58_16555 ef81eb94b77541c87392421a517d6a0b 390 SUPERFAMILY SSF161098 177 371 5.1E-34 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_16555 ef81eb94b77541c87392421a517d6a0b 390 Gene3D G3DSA:1.10.3720.10 172 378 4.8E-32 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_16555 ef81eb94b77541c87392421a517d6a0b 390 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 200 374 1.9E-21 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_00930 e12a2409e82bb8f57b7bbd15d627f783 179 Pfam PF07987 Domain of unkown function (DUF1775) 30 175 1.5E-49 T 11-10-2018 IPR012533 YcnI-like AMK58_00930 e12a2409e82bb8f57b7bbd15d627f783 179 Gene3D G3DSA:2.60.40.2230 28 179 2.5E-31 T 11-10-2018 IPR038507 YcnI-like superfamily AMK58_19860 f40c749a1f73c9f56c6115e6914dbe6d 335 Pfam PF01384 Phosphate transporter family 25 323 8.3E-89 T 11-10-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 AMK58_13170 6a03ee04a37b0e9b3101f670e179a1b1 1164 SUPERFAMILY SSF51971 377 732 2.55E-16 T 11-10-2018 AMK58_13170 6a03ee04a37b0e9b3101f670e179a1b1 1164 SUPERFAMILY SSF52343 939 1119 5.46E-13 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMK58_13170 6a03ee04a37b0e9b3101f670e179a1b1 1164 SUPERFAMILY SSF63380 844 942 2.72E-11 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AMK58_13170 6a03ee04a37b0e9b3101f670e179a1b1 1164 Gene3D G3DSA:2.40.30.10 842 942 2.8E-10 T 11-10-2018 AMK58_13170 6a03ee04a37b0e9b3101f670e179a1b1 1164 Gene3D G3DSA:3.40.50.80 944 1070 1.9E-9 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMK58_01885 d9601a7eac43472c550c85b0b84c7670 427 Gene3D G3DSA:1.10.150.130 101 227 1.1E-12 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal AMK58_01885 d9601a7eac43472c550c85b0b84c7670 427 Pfam PF00589 Phage integrase family 238 397 1.2E-30 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMK58_01885 d9601a7eac43472c550c85b0b84c7670 427 Gene3D G3DSA:1.10.443.10 231 316 2.0E-15 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMK58_01885 d9601a7eac43472c550c85b0b84c7670 427 Gene3D G3DSA:1.10.443.10 317 400 3.9E-17 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMK58_01885 d9601a7eac43472c550c85b0b84c7670 427 SUPERFAMILY SSF56349 107 404 5.89E-53 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMK58_10740 32ae0805bbd0cbb6a57d47603e9407f1 429 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 101 119 8.0E-10 T 11-10-2018 AMK58_10740 32ae0805bbd0cbb6a57d47603e9407f1 429 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 119 138 8.0E-10 T 11-10-2018 AMK58_10740 32ae0805bbd0cbb6a57d47603e9407f1 429 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 49 74 8.0E-10 T 11-10-2018 AMK58_10740 32ae0805bbd0cbb6a57d47603e9407f1 429 Pfam PF01019 Gamma-glutamyltranspeptidase 42 210 1.2E-25 T 11-10-2018 AMK58_10740 32ae0805bbd0cbb6a57d47603e9407f1 429 SUPERFAMILY SSF56235 25 329 8.68E-44 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMK58_26660 e59be035f3cb6bbcc6ddcda20cd98840 349 Pfam PF02653 Branched-chain amino acid transport system / permease component 59 335 5.3E-36 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_15730 33b55c74dbf474bfb17809f6c888fc91 127 Gene3D G3DSA:3.10.129.10 27 127 2.9E-10 T 11-10-2018 AMK58_15730 33b55c74dbf474bfb17809f6c888fc91 127 SUPERFAMILY SSF54637 4 126 9.68E-11 T 11-10-2018 IPR029069 HotDog domain superfamily AMK58_10660 48d60cea046d29db48ad1e637f008a51 139 Gene3D G3DSA:2.60.120.10 11 135 3.4E-40 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_10660 48d60cea046d29db48ad1e637f008a51 139 SUPERFAMILY SSF51182 22 130 2.8E-17 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily AMK58_10660 48d60cea046d29db48ad1e637f008a51 139 Pfam PF07883 Cupin domain 55 120 4.8E-8 T 11-10-2018 IPR013096 Cupin 2, conserved barrel AMK58_16070 a4147b4dfe9f48fa399c19b172d801d6 84 Pfam PF13751 Transposase DDE domain 31 77 3.0E-8 T 11-10-2018 IPR025668 Transposase DDE domain AMK58_10095 4e85b9188be5f73ad34dd79b72936ba2 245 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 9 61 7.6E-16 T 11-10-2018 IPR025713 Motility protein B, N-terminal domain AMK58_10095 4e85b9188be5f73ad34dd79b72936ba2 245 SUPERFAMILY SSF103088 118 207 3.27E-7 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMK58_10095 4e85b9188be5f73ad34dd79b72936ba2 245 Gene3D G3DSA:3.30.1330.60 89 213 8.4E-10 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMK58_10865 0a1eab3f673e45769833f735c65a4a06 370 Gene3D G3DSA:3.40.50.10540 6 328 6.5E-101 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily AMK58_10865 0a1eab3f673e45769833f735c65a4a06 370 Gene3D G3DSA:3.30.1540.10 224 311 6.5E-101 T 11-10-2018 AMK58_10865 0a1eab3f673e45769833f735c65a4a06 370 SUPERFAMILY SSF89796 3 360 2.88E-99 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily AMK58_10865 0a1eab3f673e45769833f735c65a4a06 370 Pfam PF02515 CoA-transferase family III 6 336 5.7E-96 T 11-10-2018 IPR003673 CoA-transferase family III GO:0003824 AMK58_13965 bafca735f8bfe517b9cab967c8b23143 140 Gene3D G3DSA:3.10.180.10 3 134 1.6E-34 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMK58_13965 bafca735f8bfe517b9cab967c8b23143 140 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 124 9.9E-8 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMK58_13965 bafca735f8bfe517b9cab967c8b23143 140 SUPERFAMILY SSF54593 4 128 7.84E-23 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMK58_13115 03033c8e51509925580abb159d2e23f0 103 Pfam PF09650 Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn) 6 95 1.2E-17 T 11-10-2018 IPR013433 Putative polyhydroxyalkanoic acid system protein AMK58_08860 d48a183c42099677687d766810b828ca 729 Gene3D G3DSA:3.20.20.80 182 724 5.5E-126 T 11-10-2018 AMK58_08860 d48a183c42099677687d766810b828ca 729 Pfam PF02446 4-alpha-glucanotransferase 189 705 2.5E-118 T 11-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 AMK58_08860 d48a183c42099677687d766810b828ca 729 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 137 722 1.4E-134 T 11-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 AMK58_08860 d48a183c42099677687d766810b828ca 729 SUPERFAMILY SSF51445 170 726 6.98E-142 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily AMK58_12785 7fa78ed0459c5482a96d8e3ee25a7489 192 Pfam PF02659 Putative manganese efflux pump 32 186 3.0E-49 T 11-10-2018 IPR003810 Putative manganese efflux pump AMK58_12785 7fa78ed0459c5482a96d8e3ee25a7489 192 Hamap MF_01521 Probable manganese efflux pump MntP [mntP]. 1 189 23.365 T 11-10-2018 IPR022929 Putative manganese efflux pump MntP AMK58_18615 23de15c98445ed14857e09dcea7992bf 348 Gene3D G3DSA:3.40.190.170 25 327 7.7E-93 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily AMK58_18615 23de15c98445ed14857e09dcea7992bf 348 Gene3D G3DSA:3.40.190.10 143 314 7.7E-93 T 11-10-2018 AMK58_18615 23de15c98445ed14857e09dcea7992bf 348 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 27 311 8.4E-48 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 AMK58_18615 23de15c98445ed14857e09dcea7992bf 348 PIRSF PIRSF039026 1 348 8.7E-112 T 11-10-2018 IPR026289 Solute binding protein, mannitol/chloroaromatic system-like AMK58_14560 31bdcd2cac74f32b81c59dd6f00b7b0d 321 SUPERFAMILY SSF51735 4 320 4.41E-59 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_14560 31bdcd2cac74f32b81c59dd6f00b7b0d 321 Gene3D G3DSA:3.40.50.720 3 321 1.4E-92 T 11-10-2018 AMK58_14560 31bdcd2cac74f32b81c59dd6f00b7b0d 321 Pfam PF01370 NAD dependent epimerase/dehydratase family 5 229 4.0E-29 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMK58_14560 31bdcd2cac74f32b81c59dd6f00b7b0d 321 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 2 173 0.0085 T 11-10-2018 AMK58_28960 e06ae92f7891e4d44afc01f3b6ee453a 327 Hamap MF_00956 GDP-L-fucose synthase [fcl]. 12 313 46.627 T 11-10-2018 IPR028614 GDP-L-fucose synthase/GDP-L-colitose synthase GO:0009226|GO:0016491 KEGG: 00051+1.1.1.271|KEGG: 00520+1.1.1.271|MetaCyc: PWY-66|Reactome: R-HSA-6787639 AMK58_28960 e06ae92f7891e4d44afc01f3b6ee453a 327 Gene3D G3DSA:3.90.25.10 176 311 3.0E-94 T 11-10-2018 AMK58_28960 e06ae92f7891e4d44afc01f3b6ee453a 327 Pfam PF01370 NAD dependent epimerase/dehydratase family 16 245 3.6E-67 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMK58_28960 e06ae92f7891e4d44afc01f3b6ee453a 327 SUPERFAMILY SSF51735 8 315 1.81E-72 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_28960 e06ae92f7891e4d44afc01f3b6ee453a 327 Gene3D G3DSA:3.40.50.720 15 302 3.0E-94 T 11-10-2018 AMK58_26325 0d75523b7115ddfe6403bc0157decb9c 215 Gene3D G3DSA:1.20.58.220 18 215 1.2E-48 T 11-10-2018 IPR038078 PhoU-like domain superfamily AMK58_26325 0d75523b7115ddfe6403bc0157decb9c 215 Pfam PF01865 Protein of unknown function DUF47 12 212 4.3E-25 T 11-10-2018 IPR018445 Putative phosphate transport regulator AMK58_11105 b89c3eadb8d781abaf6661f821d3c6dc 341 PRINTS PR00069 Aldo-keto reductase signature 103 121 4.5E-8 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMK58_11105 b89c3eadb8d781abaf6661f821d3c6dc 341 PRINTS PR00069 Aldo-keto reductase signature 134 151 4.5E-8 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMK58_11105 b89c3eadb8d781abaf6661f821d3c6dc 341 PRINTS PR00069 Aldo-keto reductase signature 39 63 4.5E-8 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMK58_11105 b89c3eadb8d781abaf6661f821d3c6dc 341 Gene3D G3DSA:3.20.20.100 1 323 8.0E-116 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMK58_11105 b89c3eadb8d781abaf6661f821d3c6dc 341 Pfam PF00248 Aldo/keto reductase family 15 310 9.1E-73 T 11-10-2018 IPR023210 NADP-dependent oxidoreductase domain AMK58_11105 b89c3eadb8d781abaf6661f821d3c6dc 341 SUPERFAMILY SSF51430 1 311 9.17E-103 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMK58_04695 c7e33ff0d1a4837cefc30f7883dc6654 278 Pfam PF13289 SIR2-like domain 102 258 5.3E-20 T 11-10-2018 IPR039444 SIR2-like domain AMK58_01410 b7b77afc2de67da34d489639042c12bd 162 Pfam PF03918 Cytochrome C biogenesis protein 8 157 4.3E-52 T 11-10-2018 IPR005616 CcmH/CycL/Ccl2/NrfF family AMK58_01410 b7b77afc2de67da34d489639042c12bd 162 Gene3D G3DSA:1.10.8.640 16 99 9.3E-30 T 11-10-2018 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily AMK58_26245 7543c9d275fcc40f1f790e84daf3809b 121 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 21 121 14.315 T 11-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 AMK58_26245 7543c9d275fcc40f1f790e84daf3809b 121 Pfam PF02049 Flagellar hook-basal body complex protein FliE 36 121 1.9E-19 T 11-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 AMK58_00555 c133cddbf8ebd76c53b359e6311c18bb 483 Pfam PF11870 Domain of unknown function (DUF3390) 399 470 2.2E-9 T 11-10-2018 IPR024569 4Fe-4S binding protein, C-terminal AMK58_00555 c133cddbf8ebd76c53b359e6311c18bb 483 Pfam PF02589 LUD domain 68 296 1.4E-51 T 11-10-2018 IPR003741 LUD domain AMK58_00555 c133cddbf8ebd76c53b359e6311c18bb 483 TIGRFAM TIGR00273 TIGR00273: iron-sulfur cluster-binding protein 18 455 3.5E-141 T 11-10-2018 IPR004452 4Fe-4S binding protein GO:0019516 AMK58_00555 c133cddbf8ebd76c53b359e6311c18bb 483 SUPERFAMILY SSF100950 62 297 2.43E-41 T 11-10-2018 IPR037171 NagB/RpiA transferase-like AMK58_00555 c133cddbf8ebd76c53b359e6311c18bb 483 Pfam PF13534 4Fe-4S dicluster domain 313 378 4.6E-7 T 11-10-2018 AMK58_00555 c133cddbf8ebd76c53b359e6311c18bb 483 SUPERFAMILY SSF46548 275 394 2.27E-17 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AMK58_00555 c133cddbf8ebd76c53b359e6311c18bb 483 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 314 325 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMK58_00555 c133cddbf8ebd76c53b359e6311c18bb 483 Gene3D G3DSA:3.40.50.10420 138 296 2.3E-17 T 11-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily AMK58_12895 31f6f87b7a38efd0412ba3f6a1580479 427 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 421 2.4E-113 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 AMK58_12895 31f6f87b7a38efd0412ba3f6a1580479 427 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 416 1.6E-96 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit AMK58_12895 31f6f87b7a38efd0412ba3f6a1580479 427 PIRSF PIRSF006066 1 427 9.8E-128 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 AMK58_18780 79f7d2b85e7337d13f438c10ef740372 447 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 23 388 1.3E-46 T 11-10-2018 IPR010263 Type VI secretion protein, VC_A0114 AMK58_18780 79f7d2b85e7337d13f438c10ef740372 447 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 11 411 1.3E-63 T 11-10-2018 IPR010263 Type VI secretion protein, VC_A0114 AMK58_22550 796e4cd212800befa13a32c2348f77d3 171 Pfam PF06776 Invasion associated locus B (IalB) protein 32 169 6.2E-29 T 11-10-2018 IPR010642 Invasion protein B AMK58_22550 796e4cd212800befa13a32c2348f77d3 171 Gene3D G3DSA:2.60.40.1880 29 171 1.3E-30 T 11-10-2018 IPR038696 Invasion protein B superfamily AMK58_13165 da08ab541ed7a72e63496ba21ec27e67 163 SUPERFAMILY SSF53955 4 149 3.22E-48 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily AMK58_13165 da08ab541ed7a72e63496ba21ec27e67 163 Pfam PF00959 Phage lysozyme 30 128 1.7E-18 T 11-10-2018 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 AMK58_13165 da08ab541ed7a72e63496ba21ec27e67 163 Gene3D G3DSA:1.10.530.40 5 150 1.4E-50 T 11-10-2018 AMK58_03100 41a7cc17dbf7c71d70af1400d19a7e3f 418 Pfam PF13584 Oxygen tolerance 22 328 4.1E-31 T 11-10-2018 IPR025738 Aerotolerance-related protein BatD AMK58_19260 fd90ab381ce4310b90d1edb3cfc0332a 567 ProSitePatterns PS00507 Nickel-dependent hydrogenases large subunit signature 1. 39 64 - T 11-10-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 AMK58_19260 fd90ab381ce4310b90d1edb3cfc0332a 567 SUPERFAMILY SSF56762 1 552 1.24E-169 T 11-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_19260 fd90ab381ce4310b90d1edb3cfc0332a 567 Pfam PF00374 Nickel-dependent hydrogenase 39 552 1.7E-215 T 11-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 AMK58_19260 fd90ab381ce4310b90d1edb3cfc0332a 567 ProSitePatterns PS00508 Nickel-dependent hydrogenases large subunit signature 2. 543 552 - T 11-10-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 AMK58_19260 fd90ab381ce4310b90d1edb3cfc0332a 567 Gene3D G3DSA:1.10.645.10 1 552 1.5E-223 T 11-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06765 bcf4122355f3e03efea034cf3506b452 424 Gene3D G3DSA:3.40.640.10 65 296 4.9E-122 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_06765 bcf4122355f3e03efea034cf3506b452 424 SUPERFAMILY SSF53383 6 398 1.11E-110 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_06765 bcf4122355f3e03efea034cf3506b452 424 Pfam PF00155 Aminotransferase class I and II 33 379 7.0E-59 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMK58_06765 bcf4122355f3e03efea034cf3506b452 424 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 244 257 - T 11-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 AMK58_06765 bcf4122355f3e03efea034cf3506b452 424 Gene3D G3DSA:3.90.1150.10 297 394 4.9E-122 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_03175 1d4d5fac64640bf754cc4f702109bb24 503 Pfam PF01425 Amidase 33 463 2.0E-104 T 11-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMK58_03175 1d4d5fac64640bf754cc4f702109bb24 503 ProSitePatterns PS00571 Amidases signature. 159 190 - T 11-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 AMK58_03175 1d4d5fac64640bf754cc4f702109bb24 503 PIRSF PIRSF001221 5 309 1.8E-48 T 11-10-2018 AMK58_03175 1d4d5fac64640bf754cc4f702109bb24 503 PIRSF PIRSF001221 442 473 0.0092 T 11-10-2018 AMK58_03175 1d4d5fac64640bf754cc4f702109bb24 503 PIRSF PIRSF001221 334 408 14.0 T 11-10-2018 AMK58_03175 1d4d5fac64640bf754cc4f702109bb24 503 SUPERFAMILY SSF75304 8 481 1.01E-127 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMK58_03175 1d4d5fac64640bf754cc4f702109bb24 503 Gene3D G3DSA:3.90.1300.10 6 488 6.4E-141 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMK58_22465 d2954341aa6b0e77f833b949bcceed44 476 SMART SM00986 302 470 7.3E-36 T 11-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMK58_22465 d2954341aa6b0e77f833b949bcceed44 476 SMART SM00987 302 470 7.3E-36 T 11-10-2018 AMK58_22465 d2954341aa6b0e77f833b949bcceed44 476 TIGRFAM TIGR03915 SAM_7_link_chp: probable DNA metabolism protein 10 235 5.1E-61 T 11-10-2018 IPR023875 DNA metabolism protein, putative AMK58_22465 d2954341aa6b0e77f833b949bcceed44 476 Pfam PF13566 Domain of unknown function (DUF4130 74 234 5.4E-42 T 11-10-2018 IPR025404 Domain of unknown function DUF4130 AMK58_22465 d2954341aa6b0e77f833b949bcceed44 476 SUPERFAMILY SSF52141 292 464 7.52E-42 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMK58_22465 d2954341aa6b0e77f833b949bcceed44 476 Gene3D G3DSA:3.40.470.10 279 476 1.5E-44 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMK58_22465 d2954341aa6b0e77f833b949bcceed44 476 TIGRFAM TIGR03914 UDG_fam_dom: uracil-DNA glycosylase family domain 238 471 2.7E-85 T 11-10-2018 IPR005273 Uracil-DNA glycosylase family 4 AMK58_22465 d2954341aa6b0e77f833b949bcceed44 476 Pfam PF03167 Uracil DNA glycosylase superfamily 303 470 1.8E-31 T 11-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMK58_01955 154a3b7d8b20d34a9cbd9375ac3dcea5 525 SUPERFAMILY SSF56024 16 251 6.28E-30 T 11-10-2018 AMK58_01955 154a3b7d8b20d34a9cbd9375ac3dcea5 525 Pfam PF13091 PLD-like domain 268 392 6.6E-11 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AMK58_01955 154a3b7d8b20d34a9cbd9375ac3dcea5 525 Pfam PF00614 Phospholipase D Active site motif 137 161 1.4E-5 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 AMK58_01955 154a3b7d8b20d34a9cbd9375ac3dcea5 525 Gene3D G3DSA:3.30.870.10 256 414 4.1E-19 T 11-10-2018 AMK58_01955 154a3b7d8b20d34a9cbd9375ac3dcea5 525 SMART SM00155 134 161 0.0027 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 AMK58_01955 154a3b7d8b20d34a9cbd9375ac3dcea5 525 SMART SM00155 352 379 3.7E-6 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 AMK58_01955 154a3b7d8b20d34a9cbd9375ac3dcea5 525 SUPERFAMILY SSF56024 264 419 1.44E-24 T 11-10-2018 AMK58_01955 154a3b7d8b20d34a9cbd9375ac3dcea5 525 Gene3D G3DSA:3.30.870.10 20 219 1.0E-23 T 11-10-2018 AMK58_20145 b4c3c5f79f3b1d48d8086f2e51441394 142 Gene3D G3DSA:1.20.1290.10 3 135 4.0E-41 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMK58_20145 b4c3c5f79f3b1d48d8086f2e51441394 142 Pfam PF02627 Carboxymuconolactone decarboxylase family 43 128 1.1E-22 T 11-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMK58_20145 b4c3c5f79f3b1d48d8086f2e51441394 142 SUPERFAMILY SSF69118 13 130 7.4E-36 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMK58_05315 44b781942cda930c1c61feaba82eff5e 169 Gene3D G3DSA:1.10.10.10 95 161 4.9E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_05315 44b781942cda930c1c61feaba82eff5e 169 SUPERFAMILY SSF88659 96 157 5.79E-18 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMK58_05315 44b781942cda930c1c61feaba82eff5e 169 SUPERFAMILY SSF88946 4 85 1.65E-19 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMK58_05315 44b781942cda930c1c61feaba82eff5e 169 Pfam PF04542 Sigma-70 region 2 11 74 9.7E-15 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMK58_05315 44b781942cda930c1c61feaba82eff5e 169 Gene3D G3DSA:1.10.1740.10 2 66 3.4E-21 T 11-10-2018 AMK58_05315 44b781942cda930c1c61feaba82eff5e 169 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 13 157 8.4E-28 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMK58_05315 44b781942cda930c1c61feaba82eff5e 169 Pfam PF08281 Sigma-70, region 4 101 152 2.2E-18 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMK58_14865 3270ddbe0b9b6b7c4cad358c7de5e871 480 SUPERFAMILY SSF53383 111 479 4.03E-75 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_14865 3270ddbe0b9b6b7c4cad358c7de5e871 480 Pfam PF00155 Aminotransferase class I and II 149 393 5.5E-18 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMK58_14865 3270ddbe0b9b6b7c4cad358c7de5e871 480 Gene3D G3DSA:3.40.640.10 107 471 1.6E-97 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_14865 3270ddbe0b9b6b7c4cad358c7de5e871 480 SMART SM00345 25 84 6.5E-14 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_14865 3270ddbe0b9b6b7c4cad358c7de5e871 480 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 58 74 2.5E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_14865 3270ddbe0b9b6b7c4cad358c7de5e871 480 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 44 58 2.5E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_14865 3270ddbe0b9b6b7c4cad358c7de5e871 480 SUPERFAMILY SSF46785 14 88 4.39E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_14865 3270ddbe0b9b6b7c4cad358c7de5e871 480 Pfam PF00392 Bacterial regulatory proteins, gntR family 22 84 2.0E-15 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_14865 3270ddbe0b9b6b7c4cad358c7de5e871 480 Gene3D G3DSA:1.10.10.10 9 85 2.4E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_21900 20f3ccfaf7efd0e899285a4f52cb4f6d 361 SMART SM00354 18 88 4.7E-13 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMK58_21900 20f3ccfaf7efd0e899285a4f52cb4f6d 361 Gene3D G3DSA:1.10.260.40 13 72 1.3E-16 T 11-10-2018 AMK58_21900 20f3ccfaf7efd0e899285a4f52cb4f6d 361 SUPERFAMILY SSF53822 77 340 6.28E-44 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMK58_21900 20f3ccfaf7efd0e899285a4f52cb4f6d 361 ProSitePatterns PS00356 LacI-type HTH domain signature. 21 39 - T 11-10-2018 AMK58_21900 20f3ccfaf7efd0e899285a4f52cb4f6d 361 SUPERFAMILY SSF47413 19 65 3.75E-13 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMK58_21900 20f3ccfaf7efd0e899285a4f52cb4f6d 361 Gene3D G3DSA:3.40.50.2300 182 315 8.7E-41 T 11-10-2018 AMK58_21900 20f3ccfaf7efd0e899285a4f52cb4f6d 361 Gene3D G3DSA:3.40.50.2300 134 324 8.7E-41 T 11-10-2018 AMK58_21900 20f3ccfaf7efd0e899285a4f52cb4f6d 361 Pfam PF13407 Periplasmic binding protein domain 134 332 3.0E-40 T 11-10-2018 IPR025997 Periplasmic binding protein AMK58_21900 20f3ccfaf7efd0e899285a4f52cb4f6d 361 Pfam PF00356 Bacterial regulatory proteins, lacI family 21 64 2.1E-16 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMK58_15195 f31df07ea8d7df73b66fa8d81bd30b84 195 SMART SM00855 39 162 1.6E-5 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMK58_15195 f31df07ea8d7df73b66fa8d81bd30b84 195 Gene3D G3DSA:3.40.50.1240 29 181 7.6E-25 T 11-10-2018 IPR029033 Histidine phosphatase superfamily AMK58_15195 f31df07ea8d7df73b66fa8d81bd30b84 195 SUPERFAMILY SSF53254 40 166 1.22E-17 T 11-10-2018 IPR029033 Histidine phosphatase superfamily AMK58_15195 f31df07ea8d7df73b66fa8d81bd30b84 195 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 40 119 1.3E-9 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMK58_28560 276b74eea252cfac3dfe504da5d567ad 165 Gene3D G3DSA:3.30.70.3460 37 165 5.7E-37 T 11-10-2018 AMK58_28560 276b74eea252cfac3dfe504da5d567ad 165 SUPERFAMILY SSF46785 26 81 2.79E-6 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_17700 a9c5d25543941c3f90256d8e75531f40 802 Pfam PF04453 Organic solvent tolerance protein 350 720 2.6E-49 T 11-10-2018 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 AMK58_17700 a9c5d25543941c3f90256d8e75531f40 802 Pfam PF03968 OstA-like protein 98 144 1.7E-5 T 11-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal AMK58_17700 a9c5d25543941c3f90256d8e75531f40 802 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 34 784 15.757 T 11-10-2018 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 AMK58_17700 a9c5d25543941c3f90256d8e75531f40 802 Gene3D G3DSA:2.60.450.10 84 154 2.8E-6 T 11-10-2018 AMK58_20210 f8b4a1389f45ccdd2a0ce6a1a4cfb038 301 Pfam PF13533 Biotin-lipoyl like 46 93 9.7E-17 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain AMK58_20210 f8b4a1389f45ccdd2a0ce6a1a4cfb038 301 Gene3D G3DSA:2.40.50.100 46 117 2.6E-10 T 11-10-2018 AMK58_20210 f8b4a1389f45ccdd2a0ce6a1a4cfb038 301 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 45 232 3.8E-37 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMK58_20210 f8b4a1389f45ccdd2a0ce6a1a4cfb038 301 SUPERFAMILY SSF111369 43 215 2.48E-25 T 11-10-2018 AMK58_20210 f8b4a1389f45ccdd2a0ce6a1a4cfb038 301 Pfam PF13437 HlyD family secretion protein 156 235 1.7E-11 T 11-10-2018 AMK58_20210 f8b4a1389f45ccdd2a0ce6a1a4cfb038 301 Gene3D G3DSA:2.40.30.170 169 292 3.0E-27 T 11-10-2018 AMK58_22680 9207a05a35e95a4e54b27fbd987a180e 219 SUPERFAMILY SSF100950 38 218 7.11E-42 T 11-10-2018 IPR037171 NagB/RpiA transferase-like AMK58_22680 9207a05a35e95a4e54b27fbd987a180e 219 Pfam PF02589 LUD domain 42 218 2.3E-29 T 11-10-2018 IPR003741 LUD domain AMK58_22680 9207a05a35e95a4e54b27fbd987a180e 219 Gene3D G3DSA:3.40.50.10420 36 218 5.1E-40 T 11-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily AMK58_24620 491c3c69e3f417ea630aa89189e5f614 323 SUPERFAMILY SSF53448 16 247 8.04E-45 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_24620 491c3c69e3f417ea630aa89189e5f614 323 Gene3D G3DSA:3.90.550.10 11 230 4.3E-34 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_24620 491c3c69e3f417ea630aa89189e5f614 323 Pfam PF00535 Glycosyl transferase family 2 19 131 2.9E-29 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMK58_25920 964767835a4a8de32cf8f7d82d16449f 403 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 8.8E-22 T 11-10-2018 AMK58_25920 964767835a4a8de32cf8f7d82d16449f 403 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 294 310 8.8E-22 T 11-10-2018 AMK58_25920 964767835a4a8de32cf8f7d82d16449f 403 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 328 344 8.8E-22 T 11-10-2018 AMK58_25920 964767835a4a8de32cf8f7d82d16449f 403 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 147 162 8.8E-22 T 11-10-2018 AMK58_25920 964767835a4a8de32cf8f7d82d16449f 403 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 279 294 8.8E-22 T 11-10-2018 AMK58_25920 964767835a4a8de32cf8f7d82d16449f 403 Gene3D G3DSA:3.50.50.60 3 344 7.0E-119 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_25920 964767835a4a8de32cf8f7d82d16449f 403 Pfam PF01494 FAD binding domain 3 339 6.9E-26 T 11-10-2018 IPR002938 FAD-binding domain GO:0071949 AMK58_25920 964767835a4a8de32cf8f7d82d16449f 403 SUPERFAMILY SSF51905 1 371 5.18E-66 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_25920 964767835a4a8de32cf8f7d82d16449f 403 SUPERFAMILY SSF54373 172 272 3.92E-17 T 11-10-2018 AMK58_25920 964767835a4a8de32cf8f7d82d16449f 403 Gene3D G3DSA:3.30.9.30 35 352 7.0E-119 T 11-10-2018 AMK58_03630 d5d2892f930ded3d91eff968212a9496 439 SUPERFAMILY SSF52540 10 250 3.55E-66 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_03630 d5d2892f930ded3d91eff968212a9496 439 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_03630 d5d2892f930ded3d91eff968212a9496 439 Gene3D G3DSA:3.40.50.300 7 260 4.9E-60 T 11-10-2018 AMK58_03630 d5d2892f930ded3d91eff968212a9496 439 Pfam PF09821 C-terminal AAA-associated domain 309 427 1.5E-39 T 11-10-2018 IPR018632 C-terminal AAA-associated domain AMK58_03630 d5d2892f930ded3d91eff968212a9496 439 Pfam PF00005 ABC transporter 29 168 2.0E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_03630 d5d2892f930ded3d91eff968212a9496 439 SMART SM00382 38 220 2.9E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_00715 bee67cfb9ba2fef2893b3b982d3c8a70 305 SUPERFAMILY SSF54631 73 210 5.31E-32 T 11-10-2018 AMK58_00715 bee67cfb9ba2fef2893b3b982d3c8a70 305 Pfam PF03471 Transporter associated domain 214 293 2.5E-18 T 11-10-2018 IPR005170 Transporter-associated domain AMK58_00715 bee67cfb9ba2fef2893b3b982d3c8a70 305 Pfam PF00571 CBS domain 79 136 1.0E-5 T 11-10-2018 IPR000644 CBS domain AMK58_00715 bee67cfb9ba2fef2893b3b982d3c8a70 305 Pfam PF00571 CBS domain 148 197 8.4E-7 T 11-10-2018 IPR000644 CBS domain AMK58_00715 bee67cfb9ba2fef2893b3b982d3c8a70 305 SMART SM00116 149 197 4.2 T 11-10-2018 IPR000644 CBS domain AMK58_00715 bee67cfb9ba2fef2893b3b982d3c8a70 305 SMART SM00116 87 136 1.7 T 11-10-2018 IPR000644 CBS domain AMK58_00715 bee67cfb9ba2fef2893b3b982d3c8a70 305 Gene3D G3DSA:3.30.465.10 212 294 4.0E-25 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AMK58_00715 bee67cfb9ba2fef2893b3b982d3c8a70 305 Gene3D G3DSA:3.10.580.10 60 211 2.4E-54 T 11-10-2018 AMK58_00715 bee67cfb9ba2fef2893b3b982d3c8a70 305 SUPERFAMILY SSF56176 211 297 4.36E-19 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMK58_00715 bee67cfb9ba2fef2893b3b982d3c8a70 305 SMART SM01091 213 295 5.5E-24 T 11-10-2018 IPR005170 Transporter-associated domain AMK58_09060 17f4d6e123c00fc05b7976109685a403 338 Pfam PF00535 Glycosyl transferase family 2 29 195 1.4E-20 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMK58_09060 17f4d6e123c00fc05b7976109685a403 338 Gene3D G3DSA:3.90.550.10 12 241 7.7E-31 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_09060 17f4d6e123c00fc05b7976109685a403 338 SUPERFAMILY SSF53448 26 239 4.59E-35 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_08275 ef5b44d63ff6356e1ca9d6ee6684e2eb 700 TIGRFAM TIGR01104 V_PPase: V-type H(+)-translocating pyrophosphatase 6 698 2.2E-266 T 11-10-2018 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0016020|GO:1902600 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AMK58_08275 ef5b44d63ff6356e1ca9d6ee6684e2eb 700 PIRSF PIRSF001265 1 700 6.1E-244 T 11-10-2018 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0016020|GO:1902600 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AMK58_08275 ef5b44d63ff6356e1ca9d6ee6684e2eb 700 Pfam PF03030 Inorganic H+ pyrophosphatase 13 691 2.1E-255 T 11-10-2018 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0016020|GO:1902600 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AMK58_08275 ef5b44d63ff6356e1ca9d6ee6684e2eb 700 Hamap MF_01129 Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA]. 2 697 25.092 T 11-10-2018 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0016020|GO:1902600 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AMK58_27620 faee5479e576c0310c3ba18cef7af130 346 Gene3D G3DSA:3.20.20.100 17 343 2.2E-118 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMK58_27620 faee5479e576c0310c3ba18cef7af130 346 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 284 297 7.6E-5 T 11-10-2018 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 AMK58_27620 faee5479e576c0310c3ba18cef7af130 346 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 271 283 7.6E-5 T 11-10-2018 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 AMK58_27620 faee5479e576c0310c3ba18cef7af130 346 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 128 138 7.6E-5 T 11-10-2018 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 AMK58_27620 faee5479e576c0310c3ba18cef7af130 346 SUPERFAMILY SSF51430 15 328 2.1E-92 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMK58_27620 faee5479e576c0310c3ba18cef7af130 346 Pfam PF00248 Aldo/keto reductase family 30 328 4.8E-72 T 11-10-2018 IPR023210 NADP-dependent oxidoreductase domain AMK58_20755 27c60d8a33a8f405d805839e2f0784c3 642 SUPERFAMILY SSF56935 45 640 4.12E-115 T 11-10-2018 AMK58_20755 27c60d8a33a8f405d805839e2f0784c3 642 Pfam PF00593 TonB dependent receptor 198 640 1.6E-47 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel AMK58_20755 27c60d8a33a8f405d805839e2f0784c3 642 Gene3D G3DSA:2.170.130.10 34 173 4.2E-37 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily AMK58_20755 27c60d8a33a8f405d805839e2f0784c3 642 Gene3D G3DSA:2.40.170.20 174 641 2.8E-104 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily AMK58_20755 27c60d8a33a8f405d805839e2f0784c3 642 Pfam PF07715 TonB-dependent Receptor Plug Domain 57 163 1.5E-28 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain AMK58_03295 bf21e90748b9706a6e40545461cfecd1 408 Gene3D G3DSA:1.20.1530.10 14 394 1.3E-141 T 11-10-2018 IPR023171 Na/H antiporter domain superfamily AMK58_03295 bf21e90748b9706a6e40545461cfecd1 408 TIGRFAM TIGR00773 NhaA: Na+/H+ antiporter NhaA 19 386 9.0E-137 T 11-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 AMK58_03295 bf21e90748b9706a6e40545461cfecd1 408 Hamap MF_01844 Na(+)/H(+) antiporter NhaA [nhaA]. 16 393 23.285 T 11-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 AMK58_03295 bf21e90748b9706a6e40545461cfecd1 408 Pfam PF06965 Na+/H+ antiporter 1 18 387 1.2E-139 T 11-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 AMK58_10825 c49c348a7d529c640d3ef82581f53c80 427 Gene3D G3DSA:3.40.50.2000 218 401 2.2E-58 T 11-10-2018 AMK58_10825 c49c348a7d529c640d3ef82581f53c80 427 SUPERFAMILY SSF53756 54 403 2.2E-12 T 11-10-2018 AMK58_10825 c49c348a7d529c640d3ef82581f53c80 427 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 35 209 1.1E-59 T 11-10-2018 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 AMK58_10825 c49c348a7d529c640d3ef82581f53c80 427 Gene3D G3DSA:3.40.50.11720 33 208 2.7E-47 T 11-10-2018 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 AMK58_03735 15bcd19092c6ab45ea8b4e174d498fe4 382 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 254 365 1.3E-21 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_03735 15bcd19092c6ab45ea8b4e174d498fe4 382 PRINTS PR00344 Bacterial sensor protein C-terminal signature 351 364 5.6E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_03735 15bcd19092c6ab45ea8b4e174d498fe4 382 PRINTS PR00344 Bacterial sensor protein C-terminal signature 327 345 5.6E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_03735 15bcd19092c6ab45ea8b4e174d498fe4 382 PRINTS PR00344 Bacterial sensor protein C-terminal signature 292 306 5.6E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_03735 15bcd19092c6ab45ea8b4e174d498fe4 382 PRINTS PR00344 Bacterial sensor protein C-terminal signature 310 320 5.6E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_03735 15bcd19092c6ab45ea8b4e174d498fe4 382 Gene3D G3DSA:1.10.287.130 127 209 5.1E-20 T 11-10-2018 AMK58_03735 15bcd19092c6ab45ea8b4e174d498fe4 382 Gene3D G3DSA:3.30.565.10 210 367 1.4E-37 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_03735 15bcd19092c6ab45ea8b4e174d498fe4 382 SMART SM00387 254 367 7.6E-33 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_03735 15bcd19092c6ab45ea8b4e174d498fe4 382 SUPERFAMILY SSF47384 132 208 9.81E-17 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_03735 15bcd19092c6ab45ea8b4e174d498fe4 382 SUPERFAMILY SSF55874 198 364 6.42E-40 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_03735 15bcd19092c6ab45ea8b4e174d498fe4 382 Pfam PF00512 His Kinase A (phospho-acceptor) domain 139 207 2.7E-16 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_03735 15bcd19092c6ab45ea8b4e174d498fe4 382 SMART SM00388 139 208 1.7E-18 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_13030 4453a94b2bbc81eefd6690b470ae4a4f 279 Pfam PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase 18 259 9.6E-77 T 11-10-2018 IPR006748 Aminoglycoside/hydroxyurea antibiotic resistance kinase GO:0006468|GO:0016773|GO:0019748 AMK58_13030 4453a94b2bbc81eefd6690b470ae4a4f 279 SUPERFAMILY SSF56112 28 259 9.04E-31 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily AMK58_12275 a1b1de56582ce3bf3a9c77fdd6810d62 393 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 113 151 - T 11-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 AMK58_12275 a1b1de56582ce3bf3a9c77fdd6810d62 393 Gene3D G3DSA:3.30.70.360 195 308 2.8E-116 T 11-10-2018 AMK58_12275 a1b1de56582ce3bf3a9c77fdd6810d62 393 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 13 390 50.331 T 11-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 AMK58_12275 a1b1de56582ce3bf3a9c77fdd6810d62 393 Pfam PF01546 Peptidase family M20/M25/M40 78 387 8.1E-48 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 AMK58_12275 a1b1de56582ce3bf3a9c77fdd6810d62 393 Pfam PF07687 Peptidase dimerisation domain 191 296 2.7E-19 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain AMK58_12275 a1b1de56582ce3bf3a9c77fdd6810d62 393 SUPERFAMILY SSF55031 195 301 3.59E-25 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain AMK58_12275 a1b1de56582ce3bf3a9c77fdd6810d62 393 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 17 387 2.6E-128 T 11-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 AMK58_12275 a1b1de56582ce3bf3a9c77fdd6810d62 393 Gene3D G3DSA:3.40.630.10 19 377 2.8E-116 T 11-10-2018 AMK58_12275 a1b1de56582ce3bf3a9c77fdd6810d62 393 SUPERFAMILY SSF53187 14 388 2.8E-63 T 11-10-2018 AMK58_09385 eab561118f8d882b4ec39b1a790d27e9 395 SUPERFAMILY SSF58113 246 379 1.09E-5 T 11-10-2018 AMK58_23755 7799dfad3130b7d6c5e82c2f958ab1f3 246 SMART SM00824 Thioesterase 23 241 4.8E-4 T 11-10-2018 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 AMK58_23755 7799dfad3130b7d6c5e82c2f958ab1f3 246 Pfam PF00975 Thioesterase domain 21 242 3.8E-42 T 11-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 AMK58_23755 7799dfad3130b7d6c5e82c2f958ab1f3 246 Gene3D G3DSA:3.40.50.1820 20 244 6.1E-61 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_23755 7799dfad3130b7d6c5e82c2f958ab1f3 246 SUPERFAMILY SSF53474 5 242 3.16E-48 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_11725 b351b39429f95b4d8435453e54d3eba2 413 Pfam PF04748 Divergent polysaccharide deacetylase 194 407 1.9E-66 T 11-10-2018 IPR006837 Divergent polysaccharide deacetylase AMK58_11725 b351b39429f95b4d8435453e54d3eba2 413 Gene3D G3DSA:3.20.20.370 174 413 3.8E-86 T 11-10-2018 AMK58_11725 b351b39429f95b4d8435453e54d3eba2 413 SUPERFAMILY SSF88713 189 407 1.02E-59 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMK58_03565 7623b5e7f9dc285ad6d5e5394a32f4e1 176 SUPERFAMILY SSF158442 16 160 2.48E-31 T 11-10-2018 IPR023380 DsbB-like superfamily AMK58_03565 7623b5e7f9dc285ad6d5e5394a32f4e1 176 Gene3D G3DSA:1.20.1550.10 6 174 1.9E-24 T 11-10-2018 IPR023380 DsbB-like superfamily AMK58_03565 7623b5e7f9dc285ad6d5e5394a32f4e1 176 Pfam PF02600 Disulfide bond formation protein DsbB 11 160 7.9E-35 T 11-10-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 AMK58_03565 7623b5e7f9dc285ad6d5e5394a32f4e1 176 PIRSF PIRSF033913 4 167 1.6E-34 T 11-10-2018 IPR024199 Uncharacterised conserved protein, DsbB-like AMK58_18425 8cc637852293d5cffe17b8e020ca160f 557 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 29 292 9.1E-54 T 11-10-2018 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 AMK58_18425 8cc637852293d5cffe17b8e020ca160f 557 SUPERFAMILY SSF49785 346 556 3.4E-47 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily AMK58_18425 8cc637852293d5cffe17b8e020ca160f 557 Pfam PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain 330 551 7.6E-24 T 11-10-2018 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 AMK58_18425 8cc637852293d5cffe17b8e020ca160f 557 TIGRFAM TIGR00976 /NonD: hydrolase CocE/NonD family protein 25 555 1.9E-109 T 11-10-2018 IPR005674 CocE/Serine esterase GO:0016787 AMK58_18425 8cc637852293d5cffe17b8e020ca160f 557 SUPERFAMILY SSF53474 11 352 6.95E-42 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_18425 8cc637852293d5cffe17b8e020ca160f 557 Gene3D G3DSA:2.60.120.260 359 557 1.5E-43 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily AMK58_18425 8cc637852293d5cffe17b8e020ca160f 557 SMART SM00939 318 552 3.7E-50 T 11-10-2018 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 AMK58_18425 8cc637852293d5cffe17b8e020ca160f 557 Gene3D G3DSA:1.10.3020.10 155 242 1.9E-83 T 11-10-2018 AMK58_18425 8cc637852293d5cffe17b8e020ca160f 557 Gene3D G3DSA:3.40.50.1820 24 349 1.9E-83 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_12580 c291e711fa6bd53d48f3335cc748583d 237 Hamap MF_01200_B Orotidine 5'-phosphate decarboxylase [pyrF]. 9 237 32.493 T 11-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMK58_12580 c291e711fa6bd53d48f3335cc748583d 237 SUPERFAMILY SSF51366 10 236 1.63E-68 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AMK58_12580 c291e711fa6bd53d48f3335cc748583d 237 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 14 233 9.5E-48 T 11-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMK58_12580 c291e711fa6bd53d48f3335cc748583d 237 SMART SM00934 11 233 2.7E-80 T 11-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMK58_12580 c291e711fa6bd53d48f3335cc748583d 237 Gene3D G3DSA:3.20.20.70 8 237 1.9E-81 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_12580 c291e711fa6bd53d48f3335cc748583d 237 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 11 233 4.4E-38 T 11-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMK58_12580 c291e711fa6bd53d48f3335cc748583d 237 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 64 77 - T 11-10-2018 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMK58_16300 5b4b5772fd0da8eaebf162ef06dae91a 413 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 111 125 - T 11-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 AMK58_16300 5b4b5772fd0da8eaebf162ef06dae91a 413 TIGRFAM TIGR00260 thrC: threonine synthase 68 384 5.8E-51 T 11-10-2018 IPR004450 Threonine synthase-like AMK58_16300 5b4b5772fd0da8eaebf162ef06dae91a 413 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 83 387 3.8E-69 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AMK58_16300 5b4b5772fd0da8eaebf162ef06dae91a 413 Gene3D G3DSA:3.40.50.1100 69 394 4.9E-111 T 11-10-2018 AMK58_16300 5b4b5772fd0da8eaebf162ef06dae91a 413 Gene3D G3DSA:3.40.50.1100 120 216 4.9E-111 T 11-10-2018 AMK58_16300 5b4b5772fd0da8eaebf162ef06dae91a 413 SUPERFAMILY SSF53686 6 394 7.07E-89 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMK58_01390 e2fcd178d0beebbcee2a4f7df159e742 132 Gene3D G3DSA:3.40.250.10 1 131 2.1E-36 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily AMK58_01390 e2fcd178d0beebbcee2a4f7df159e742 132 SUPERFAMILY SSF52821 6 126 9.69E-29 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily AMK58_01390 e2fcd178d0beebbcee2a4f7df159e742 132 SMART SM00450 19 123 3.5E-18 T 11-10-2018 IPR001763 Rhodanese-like domain AMK58_01390 e2fcd178d0beebbcee2a4f7df159e742 132 Pfam PF00581 Rhodanese-like domain 20 120 2.1E-15 T 11-10-2018 IPR001763 Rhodanese-like domain AMK58_19570 7814acb9621688b1560d45bcbd188048 166 Gene3D G3DSA:2.30.30.40 27 152 3.8E-33 T 11-10-2018 AMK58_19570 7814acb9621688b1560d45bcbd188048 166 Gene3D G3DSA:2.40.50.180 44 153 3.8E-33 T 11-10-2018 AMK58_19570 7814acb9621688b1560d45bcbd188048 166 SMART SM00260 21 158 2.2E-33 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMK58_19570 7814acb9621688b1560d45bcbd188048 166 SUPERFAMILY SSF50341 23 160 8.11E-32 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 AMK58_19570 7814acb9621688b1560d45bcbd188048 166 Pfam PF01584 CheW-like domain 26 159 3.2E-30 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMK58_28930 8d9e0a3aaaf54c246626b0290fc5d761 309 Gene3D G3DSA:3.40.50.720 11 285 1.4E-103 T 11-10-2018 AMK58_28930 8d9e0a3aaaf54c246626b0290fc5d761 309 TIGRFAM TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase 11 297 1.8E-94 T 11-10-2018 IPR005913 dTDP-4-dehydrorhamnose reductase family Reactome: R-HSA-156581|Reactome: R-HSA-5689880 AMK58_28930 8d9e0a3aaaf54c246626b0290fc5d761 309 Pfam PF04321 RmlD substrate binding domain 11 298 6.0E-108 T 11-10-2018 IPR029903 RmlD-like substrate binding domain Reactome: R-HSA-156581|Reactome: R-HSA-5689880 AMK58_28930 8d9e0a3aaaf54c246626b0290fc5d761 309 Gene3D G3DSA:3.90.25.10 168 292 1.4E-103 T 11-10-2018 AMK58_28930 8d9e0a3aaaf54c246626b0290fc5d761 309 SUPERFAMILY SSF51735 11 299 2.37E-94 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_03910 d13a4e04f7b0c8354dd84756f54a584d 308 SUPERFAMILY SSF56176 24 208 3.02E-41 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMK58_03910 d13a4e04f7b0c8354dd84756f54a584d 308 Pfam PF01565 FAD binding domain 38 164 1.8E-16 T 11-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMK58_03910 d13a4e04f7b0c8354dd84756f54a584d 308 SUPERFAMILY SSF56194 196 301 7.59E-37 T 11-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMK58_03910 d13a4e04f7b0c8354dd84756f54a584d 308 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 308 94.323 T 11-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMK58_03910 d13a4e04f7b0c8354dd84756f54a584d 308 Gene3D G3DSA:3.30.43.10 6 87 2.0E-21 T 11-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 AMK58_03910 d13a4e04f7b0c8354dd84756f54a584d 308 Gene3D G3DSA:3.30.465.10 92 216 9.6E-31 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AMK58_03910 d13a4e04f7b0c8354dd84756f54a584d 308 Gene3D G3DSA:3.90.78.10 217 306 1.1E-32 T 11-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMK58_03910 d13a4e04f7b0c8354dd84756f54a584d 308 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 25 299 2.9E-53 T 11-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMK58_03910 d13a4e04f7b0c8354dd84756f54a584d 308 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 200 299 1.4E-29 T 11-10-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMK58_12510 1c81fe5a26aa33fd4a536287c8cc1899 204 Pfam PF11136 Protein of unknown function (DUF2889) 13 136 5.1E-47 T 11-10-2018 IPR021312 Protein of unknown function DUF2889 AMK58_11230 0771b0a1af5b01b49b6ec37985c46cd7 227 Gene3D G3DSA:3.90.320.10 7 192 3.4E-13 T 11-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal AMK58_11230 0771b0a1af5b01b49b6ec37985c46cd7 227 TIGRFAM TIGR00372 cas4: CRISPR-associated protein Cas4 13 191 6.2E-42 T 11-10-2018 IPR013343 CRISPR-associated protein Cas4 AMK58_11230 0771b0a1af5b01b49b6ec37985c46cd7 227 Pfam PF01930 Domain of unknown function DUF83 14 191 7.3E-34 T 11-10-2018 IPR022765 Dna2/Cas4, domain of unknown function DUF83 AMK58_06155 a9d20d8287b32b8abc1e42d6995a3de8 204 Gene3D G3DSA:1.20.120.1200 5 170 6.8E-42 T 11-10-2018 AMK58_06155 a9d20d8287b32b8abc1e42d6995a3de8 204 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 18 168 3.7E-37 T 11-10-2018 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_24330 05456ce115db60f805361ce6f32534cd 466 Gene3D G3DSA:3.90.1300.10 22 464 4.9E-145 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMK58_24330 05456ce115db60f805361ce6f32534cd 466 SUPERFAMILY SSF75304 25 463 2.35E-137 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMK58_24330 05456ce115db60f805361ce6f32534cd 466 Pfam PF01425 Amidase 27 444 4.8E-114 T 11-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMK58_24330 05456ce115db60f805361ce6f32534cd 466 ProSitePatterns PS00571 Amidases signature. 153 184 - T 11-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 AMK58_16710 ac7b3d7afdb0c4674a9df63b8a18a876 332 Pfam PF02653 Branched-chain amino acid transport system / permease component 29 298 6.0E-40 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_24210 05bde185efc64e5f01429467c5c6db27 508 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 394 501 1.9E-20 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_24210 05bde185efc64e5f01429467c5c6db27 508 SMART SM00091 14 80 5.6E-16 T 11-10-2018 IPR000014 PAS domain AMK58_24210 05bde185efc64e5f01429467c5c6db27 508 SMART SM00091 144 210 3.1E-12 T 11-10-2018 IPR000014 PAS domain AMK58_24210 05bde185efc64e5f01429467c5c6db27 508 SUPERFAMILY SSF47384 279 346 2.16E-9 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_24210 05bde185efc64e5f01429467c5c6db27 508 SUPERFAMILY SSF55785 25 141 3.21E-34 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_24210 05bde185efc64e5f01429467c5c6db27 508 PRINTS PR00344 Bacterial sensor protein C-terminal signature 453 463 2.2E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_24210 05bde185efc64e5f01429467c5c6db27 508 PRINTS PR00344 Bacterial sensor protein C-terminal signature 487 500 2.2E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_24210 05bde185efc64e5f01429467c5c6db27 508 PRINTS PR00344 Bacterial sensor protein C-terminal signature 435 449 2.2E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_24210 05bde185efc64e5f01429467c5c6db27 508 PRINTS PR00344 Bacterial sensor protein C-terminal signature 464 482 2.2E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_24210 05bde185efc64e5f01429467c5c6db27 508 SMART SM00086 220 260 34.0 T 11-10-2018 IPR001610 PAC motif AMK58_24210 05bde185efc64e5f01429467c5c6db27 508 SMART SM00086 90 132 0.5 T 11-10-2018 IPR001610 PAC motif AMK58_24210 05bde185efc64e5f01429467c5c6db27 508 SUPERFAMILY SSF55874 358 500 3.54E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_24210 05bde185efc64e5f01429467c5c6db27 508 SMART SM00388 282 351 1.9E-8 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_24210 05bde185efc64e5f01429467c5c6db27 508 Gene3D G3DSA:1.10.287.130 261 347 3.7E-21 T 11-10-2018 AMK58_24210 05bde185efc64e5f01429467c5c6db27 508 Gene3D G3DSA:3.30.450.20 12 135 3.1E-40 T 11-10-2018 AMK58_24210 05bde185efc64e5f01429467c5c6db27 508 Gene3D G3DSA:3.30.450.20 140 260 7.3E-36 T 11-10-2018 AMK58_24210 05bde185efc64e5f01429467c5c6db27 508 Gene3D G3DSA:3.30.565.10 350 506 4.2E-41 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_24210 05bde185efc64e5f01429467c5c6db27 508 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 140 267 3.4E-36 T 11-10-2018 IPR000014 PAS domain AMK58_24210 05bde185efc64e5f01429467c5c6db27 508 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 15 139 1.6E-34 T 11-10-2018 IPR000014 PAS domain AMK58_24210 05bde185efc64e5f01429467c5c6db27 508 SUPERFAMILY SSF55785 129 258 1.05E-29 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_24210 05bde185efc64e5f01429467c5c6db27 508 SMART SM00387 393 503 1.4E-34 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_24210 05bde185efc64e5f01429467c5c6db27 508 Pfam PF00512 His Kinase A (phospho-acceptor) domain 283 345 1.3E-10 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_24210 05bde185efc64e5f01429467c5c6db27 508 Pfam PF00989 PAS fold 15 129 2.5E-18 T 11-10-2018 IPR013767 PAS fold GO:0006355 AMK58_24210 05bde185efc64e5f01429467c5c6db27 508 Pfam PF00989 PAS fold 145 256 2.0E-17 T 11-10-2018 IPR013767 PAS fold GO:0006355 AMK58_23150 b4a28b9837378f0d3fa8ef32b87f7769 640 SUPERFAMILY SSF56935 36 640 6.42E-125 T 11-10-2018 AMK58_23150 b4a28b9837378f0d3fa8ef32b87f7769 640 Gene3D G3DSA:2.170.130.10 31 162 8.0E-38 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily AMK58_23150 b4a28b9837378f0d3fa8ef32b87f7769 640 Gene3D G3DSA:2.40.170.20 168 640 1.8E-117 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily AMK58_23150 b4a28b9837378f0d3fa8ef32b87f7769 640 Pfam PF00593 TonB dependent receptor 245 639 7.3E-64 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel AMK58_23150 b4a28b9837378f0d3fa8ef32b87f7769 640 Pfam PF07715 TonB-dependent Receptor Plug Domain 49 157 8.6E-24 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain AMK58_23470 6022ca698de4aa4a73d37f461f0eecd5 474 Gene3D G3DSA:3.30.1330.120 286 421 3.5E-104 T 11-10-2018 AMK58_23470 6022ca698de4aa4a73d37f461f0eecd5 474 Pfam PF03972 MmgE/PrpD family 27 452 9.4E-93 T 11-10-2018 IPR005656 MmgE/PrpD GO:0016829 AMK58_23470 6022ca698de4aa4a73d37f461f0eecd5 474 Gene3D G3DSA:1.10.4100.10 45 439 3.5E-104 T 11-10-2018 AMK58_23470 6022ca698de4aa4a73d37f461f0eecd5 474 SUPERFAMILY SSF103378 23 465 5.89E-93 T 11-10-2018 IPR036148 MmgE/PrpD superfamily GO:0016829 AMK58_12535 adb6fb66ad0ce670a192651dacd5355d 126 TIGRFAM TIGR04256 GxxExxY: GxxExxY protein 12 124 4.6E-39 T 11-10-2018 IPR026350 GxxExxY protein AMK58_12535 adb6fb66ad0ce670a192651dacd5355d 126 Pfam PF13366 PD-(D/E)XK nuclease superfamily 11 116 5.4E-37 T 11-10-2018 IPR026350 GxxExxY protein AMK58_20205 3d5941cc4f8f1f4df1e359e8238ebe39 695 Pfam PF04632 Fusaric acid resistance protein family 19 676 6.6E-194 T 11-10-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0022857|GO:0055085 AMK58_26380 d951a84718d9e47f42adf1bba3a205c8 465 SUPERFAMILY SSF64518 164 462 3.27E-6 T 11-10-2018 AMK58_26380 d951a84718d9e47f42adf1bba3a205c8 465 PRINTS PR01005 Flagellar hook-associated protein signature 122 142 6.2E-9 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 AMK58_26380 d951a84718d9e47f42adf1bba3a205c8 465 PRINTS PR01005 Flagellar hook-associated protein signature 13 36 6.2E-9 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 AMK58_26380 d951a84718d9e47f42adf1bba3a205c8 465 PRINTS PR01005 Flagellar hook-associated protein signature 155 179 6.2E-9 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 AMK58_26380 d951a84718d9e47f42adf1bba3a205c8 465 PRINTS PR01005 Flagellar hook-associated protein signature 213 231 6.2E-9 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 AMK58_26380 d951a84718d9e47f42adf1bba3a205c8 465 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 396 463 1.1E-7 T 11-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain AMK58_26380 d951a84718d9e47f42adf1bba3a205c8 465 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 7 463 1.5E-79 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 AMK58_12540 ab1d9f7049e754470ffe16d1191fdba8 621 Pfam PF11775 Cobalamin biosynthesis protein CobT VWA domain 393 610 6.3E-112 T 11-10-2018 IPR025861 Cobalamin biosynthesis protein CobT VWA domain KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376 AMK58_12540 ab1d9f7049e754470ffe16d1191fdba8 621 SMART SM00327 404 614 0.0015 T 11-10-2018 IPR002035 von Willebrand factor, type A AMK58_12540 ab1d9f7049e754470ffe16d1191fdba8 621 PIRSF PIRSF031715 1 618 1.3E-257 T 11-10-2018 IPR006538 Cobalt chelatase, CobT subunit GO:0009236 KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376 AMK58_12540 ab1d9f7049e754470ffe16d1191fdba8 621 TIGRFAM TIGR01651 CobT: cobaltochelatase, CobT subunit 9 611 6.8E-261 T 11-10-2018 IPR006538 Cobalt chelatase, CobT subunit GO:0009236 KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376 AMK58_12540 ab1d9f7049e754470ffe16d1191fdba8 621 Pfam PF06213 Cobalamin biosynthesis protein CobT 5 276 9.3E-92 T 11-10-2018 IPR006538 Cobalt chelatase, CobT subunit GO:0009236 KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376 AMK58_12540 ab1d9f7049e754470ffe16d1191fdba8 621 Gene3D G3DSA:3.40.50.410 405 607 2.0E-7 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMK58_12540 ab1d9f7049e754470ffe16d1191fdba8 621 SUPERFAMILY SSF53300 407 601 1.25E-15 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMK58_10145 51a32eab83f992ba238f8ed51ecbbcbf 260 SMART SM00858 129 191 1.5E-7 T 11-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 AMK58_10145 51a32eab83f992ba238f8ed51ecbbcbf 260 Pfam PF13144 Chaperone for flagella basal body P-ring formation 54 252 2.1E-37 T 11-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal AMK58_10145 51a32eab83f992ba238f8ed51ecbbcbf 260 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 119 252 1.8E-33 T 11-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal AMK58_10145 51a32eab83f992ba238f8ed51ecbbcbf 260 Gene3D G3DSA:2.30.30.760 196 255 3.8E-11 T 11-10-2018 AMK58_09615 db5f6a186566942fe172b1c1d2a8c693 387 PIRSF PIRSF001549 6 351 6.6E-40 T 11-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 AMK58_09615 db5f6a186566942fe172b1c1d2a8c693 387 Gene3D G3DSA:3.30.930.10 6 333 1.1E-59 T 11-10-2018 AMK58_09615 db5f6a186566942fe172b1c1d2a8c693 387 Pfam PF13393 Histidyl-tRNA synthetase 14 321 6.5E-91 T 11-10-2018 AMK58_09615 db5f6a186566942fe172b1c1d2a8c693 387 Hamap MF_00125 ATP phosphoribosyltransferase regulatory subunit [hisZ]. 21 368 25.174 T 11-10-2018 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 AMK58_09615 db5f6a186566942fe172b1c1d2a8c693 387 SUPERFAMILY SSF55681 11 324 2.99E-46 T 11-10-2018 AMK58_13970 5fabce548dacae2b639791c313b2e1be 390 Pfam PF13609 Gram-negative porin 14 362 1.2E-34 T 11-10-2018 AMK58_13970 5fabce548dacae2b639791c313b2e1be 390 SUPERFAMILY SSF56935 22 385 8.55E-25 T 11-10-2018 AMK58_13970 5fabce548dacae2b639791c313b2e1be 390 Gene3D G3DSA:2.40.160.10 31 375 2.2E-33 T 11-10-2018 IPR023614 Porin domain superfamily AMK58_21520 4ebb9c076385f7b0b4ad43465635ba05 247 SMART SM01007 15 195 2.4E-56 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal AMK58_21520 4ebb9c076385f7b0b4ad43465635ba05 247 SUPERFAMILY SSF53639 7 219 4.51E-61 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily AMK58_21520 4ebb9c076385f7b0b4ad43465635ba05 247 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 16 195 2.1E-44 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal AMK58_21520 4ebb9c076385f7b0b4ad43465635ba05 247 Gene3D G3DSA:3.40.225.10 3 247 5.5E-77 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily AMK58_06590 fc980b93f089c991b6e9bddba629b202 232 SUPERFAMILY SSF53474 4 167 2.32E-18 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_06590 fc980b93f089c991b6e9bddba629b202 232 Gene3D G3DSA:3.40.50.1820 1 180 6.7E-23 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_16615 7d2395a2236de0470d4b98395dbb739e 254 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 79 237 3.4E-7 T 11-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 AMK58_16615 7d2395a2236de0470d4b98395dbb739e 254 SUPERFAMILY SSF56529 5 253 1.7E-42 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AMK58_16615 7d2395a2236de0470d4b98395dbb739e 254 Gene3D G3DSA:3.90.850.10 5 254 2.4E-61 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AMK58_01235 c62cc5aab3deb86c738ab69f530109d9 488 Gene3D G3DSA:3.30.2010.10 65 145 8.0E-6 T 11-10-2018 AMK58_01235 c62cc5aab3deb86c738ab69f530109d9 488 Pfam PF01435 Peptidase family M48 71 254 5.0E-34 T 11-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AMK58_12230 6be58a65683e9f6f0276f1ed2dcc89d8 117 TIGRFAM TIGR00002 S16: ribosomal protein bS16 3 82 3.5E-31 T 11-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_12230 6be58a65683e9f6f0276f1ed2dcc89d8 117 Pfam PF00886 Ribosomal protein S16 9 70 4.5E-27 T 11-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_12230 6be58a65683e9f6f0276f1ed2dcc89d8 117 ProSitePatterns PS00732 Ribosomal protein S16 signature. 3 12 - T 11-10-2018 IPR020592 Ribosomal protein S16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_12230 6be58a65683e9f6f0276f1ed2dcc89d8 117 Gene3D G3DSA:3.30.1320.10 1 117 4.4E-39 T 11-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_12230 6be58a65683e9f6f0276f1ed2dcc89d8 117 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 2 80 23.795 T 11-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_12230 6be58a65683e9f6f0276f1ed2dcc89d8 117 SUPERFAMILY SSF54565 3 96 5.23E-32 T 11-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_27325 921c09f4f4d51378de40ea20bdb0f00c 268 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 4 264 9.8E-74 T 11-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 AMK58_27325 921c09f4f4d51378de40ea20bdb0f00c 268 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 11 259 7.2E-75 T 11-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 AMK58_27325 921c09f4f4d51378de40ea20bdb0f00c 268 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 140 152 - T 11-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 AMK58_27325 921c09f4f4d51378de40ea20bdb0f00c 268 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 8 265 19.285 T 11-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 AMK58_02160 6a4d2f117bd27049b551f95f41fa2f8c 327 SUPERFAMILY SSF53850 34 289 7.06E-6 T 11-10-2018 AMK58_02160 6a4d2f117bd27049b551f95f41fa2f8c 327 Gene3D G3DSA:3.40.190.10 129 251 2.5E-79 T 11-10-2018 AMK58_02160 6a4d2f117bd27049b551f95f41fa2f8c 327 Gene3D G3DSA:3.40.190.150 32 311 2.5E-79 T 11-10-2018 AMK58_02160 6a4d2f117bd27049b551f95f41fa2f8c 327 PIRSF PIRSF017082 1 327 5.4E-91 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 AMK58_02160 6a4d2f117bd27049b551f95f41fa2f8c 327 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 52 286 4.8E-49 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 AMK58_11285 66716d209d8c5b304f915693c92e3199 408 Gene3D G3DSA:3.30.70.580 91 244 6.7E-46 T 11-10-2018 AMK58_11285 66716d209d8c5b304f915693c92e3199 408 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 125 139 - T 11-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 AMK58_11285 66716d209d8c5b304f915693c92e3199 408 SMART SM00363 27 85 4.0E-12 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_11285 66716d209d8c5b304f915693c92e3199 408 Gene3D G3DSA:3.10.290.10 23 81 5.9E-19 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AMK58_11285 66716d209d8c5b304f915693c92e3199 408 Pfam PF01479 S4 domain 27 73 5.3E-11 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_11285 66716d209d8c5b304f915693c92e3199 408 Gene3D G3DSA:3.30.70.1560 149 239 6.7E-46 T 11-10-2018 AMK58_11285 66716d209d8c5b304f915693c92e3199 408 SUPERFAMILY SSF55120 85 242 7.55E-35 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMK58_11285 66716d209d8c5b304f915693c92e3199 408 Pfam PF00849 RNA pseudouridylate synthase 91 220 9.3E-12 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMK58_11285 66716d209d8c5b304f915693c92e3199 408 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 92 245 1.5E-36 T 11-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 AMK58_11285 66716d209d8c5b304f915693c92e3199 408 SUPERFAMILY SSF55174 24 81 2.35E-14 T 11-10-2018 AMK58_23825 35d7f79dc8fd00eb080688b46047d995 542 Pfam PF11941 Domain of unknown function (DUF3459) 443 526 1.2E-9 T 11-10-2018 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) AMK58_23825 35d7f79dc8fd00eb080688b46047d995 542 Gene3D G3DSA:3.20.20.80 12 452 5.7E-180 T 11-10-2018 AMK58_23825 35d7f79dc8fd00eb080688b46047d995 542 Gene3D G3DSA:3.90.400.10 112 182 5.7E-180 T 11-10-2018 AMK58_23825 35d7f79dc8fd00eb080688b46047d995 542 SUPERFAMILY SSF51011 460 532 7.75E-5 T 11-10-2018 AMK58_23825 35d7f79dc8fd00eb080688b46047d995 542 SMART SM00642 20 399 8.8E-139 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMK58_23825 35d7f79dc8fd00eb080688b46047d995 542 SUPERFAMILY SSF51445 11 457 2.9E-147 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily AMK58_23825 35d7f79dc8fd00eb080688b46047d995 542 Pfam PF00128 Alpha amylase, catalytic domain 35 375 7.6E-94 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMK58_12325 cc8050e511e170a149977e21e3c14bac 194 SMART SM00448 22 133 4.4E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_12325 cc8050e511e170a149977e21e3c14bac 194 SUPERFAMILY SSF52172 23 179 8.82E-32 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_12325 cc8050e511e170a149977e21e3c14bac 194 Pfam PF00072 Response regulator receiver domain 25 132 1.1E-21 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_12325 cc8050e511e170a149977e21e3c14bac 194 Gene3D G3DSA:3.40.50.2300 22 134 5.9E-28 T 11-10-2018 AMK58_12325 cc8050e511e170a149977e21e3c14bac 194 Gene3D G3DSA:1.10.10.60 135 193 4.1E-25 T 11-10-2018 AMK58_12325 cc8050e511e170a149977e21e3c14bac 194 Pfam PF02954 Bacterial regulatory protein, Fis family 156 189 1.3E-5 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMK58_03445 2a09dc8fc31bd263bf0fdcf459f1dad3 127 Pfam PF00034 Cytochrome c 29 125 3.4E-10 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_03445 2a09dc8fc31bd263bf0fdcf459f1dad3 127 SUPERFAMILY SSF46626 25 125 1.07E-33 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_03445 2a09dc8fc31bd263bf0fdcf459f1dad3 127 Gene3D G3DSA:1.10.760.10 14 125 3.9E-42 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_03445 2a09dc8fc31bd263bf0fdcf459f1dad3 127 PRINTS PR00604 Class IA and IB cytochrome C signature 49 64 1.0E-20 T 11-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_03445 2a09dc8fc31bd263bf0fdcf459f1dad3 127 PRINTS PR00604 Class IA and IB cytochrome C signature 80 96 1.0E-20 T 11-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_03445 2a09dc8fc31bd263bf0fdcf459f1dad3 127 PRINTS PR00604 Class IA and IB cytochrome C signature 37 44 1.0E-20 T 11-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_03445 2a09dc8fc31bd263bf0fdcf459f1dad3 127 PRINTS PR00604 Class IA and IB cytochrome C signature 99 109 1.0E-20 T 11-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_03445 2a09dc8fc31bd263bf0fdcf459f1dad3 127 PRINTS PR00604 Class IA and IB cytochrome C signature 116 124 1.0E-20 T 11-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_23680 7dcc5639bded57c345524505e014a9b1 257 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 253 2.1E-57 T 11-10-2018 AMK58_23680 7dcc5639bded57c345524505e014a9b1 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 3.1E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_23680 7dcc5639bded57c345524505e014a9b1 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 87 98 3.1E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_23680 7dcc5639bded57c345524505e014a9b1 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 3.1E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_23680 7dcc5639bded57c345524505e014a9b1 257 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 149 177 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMK58_23680 7dcc5639bded57c345524505e014a9b1 257 Gene3D G3DSA:3.40.50.720 4 256 6.8E-77 T 11-10-2018 AMK58_23680 7dcc5639bded57c345524505e014a9b1 257 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 11 193 0.0091 T 11-10-2018 AMK58_23680 7dcc5639bded57c345524505e014a9b1 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 87 98 8.5E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_23680 7dcc5639bded57c345524505e014a9b1 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 8.5E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_23680 7dcc5639bded57c345524505e014a9b1 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 8.5E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_23680 7dcc5639bded57c345524505e014a9b1 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 8.5E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_23680 7dcc5639bded57c345524505e014a9b1 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 8.5E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_23680 7dcc5639bded57c345524505e014a9b1 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 8.5E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_23680 7dcc5639bded57c345524505e014a9b1 257 SUPERFAMILY SSF51735 9 256 1.2E-74 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_25085 9c2e69c3346941802ccde08cc51fb0f8 288 Pfam PF16976 Flp pilus assembly protein RcpC/CpaB 111 226 2.2E-32 T 11-10-2018 IPR031571 Flp pilus assembly protein RcpC/CpaB domain AMK58_25085 9c2e69c3346941802ccde08cc51fb0f8 288 SMART SM00858 39 105 3.7E-6 T 11-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 AMK58_25085 9c2e69c3346941802ccde08cc51fb0f8 288 TIGRFAM TIGR03177 pilus_cpaB: Flp pilus assembly protein CpaB 6 283 3.9E-61 T 11-10-2018 IPR017592 Pilus assembly, Flp-type CpaB AMK58_25085 9c2e69c3346941802ccde08cc51fb0f8 288 Pfam PF08666 SAF domain 39 104 6.9E-9 T 11-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 AMK58_13630 d060f11f5d3ca41b78be3ad883a6b2f0 210 Pfam PF08722 TnsA endonuclease N terminal 44 121 1.5E-16 T 11-10-2018 IPR014833 TnsA endonuclease, N-terminal AMK58_11440 90678084c6c1bbc01e10af96535df997 234 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 2 219 3.0E-43 T 11-10-2018 AMK58_11440 90678084c6c1bbc01e10af96535df997 234 SUPERFAMILY SSF52317 1 232 1.07E-74 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_11440 90678084c6c1bbc01e10af96535df997 234 TIGRFAM TIGR01737 FGAM_synth_I: phosphoribosylformylglycinamidine synthase I 1 232 9.5E-95 T 11-10-2018 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 AMK58_11440 90678084c6c1bbc01e10af96535df997 234 Hamap MF_00421 Phosphoribosylformylglycinamidine synthase subunit PurQ [purQ]. 1 231 43.262 T 11-10-2018 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 AMK58_11440 90678084c6c1bbc01e10af96535df997 234 PIRSF PIRSF001586 1 234 2.5E-86 T 11-10-2018 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 AMK58_11440 90678084c6c1bbc01e10af96535df997 234 Gene3D G3DSA:3.40.50.880 1 234 2.0E-67 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_11440 90678084c6c1bbc01e10af96535df997 234 SMART SM01211 1 233 4.8E-123 T 11-10-2018 AMK58_02840 b31ed69ed124cbc6c030f01b4d13b23d 335 Pfam PF01734 Patatin-like phospholipase 6 187 1.4E-23 T 11-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 AMK58_02840 b31ed69ed124cbc6c030f01b4d13b23d 335 SUPERFAMILY SSF52151 5 279 1.57E-48 T 11-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase AMK58_02840 b31ed69ed124cbc6c030f01b4d13b23d 335 Gene3D G3DSA:3.40.1090.10 1 318 1.7E-62 T 11-10-2018 AMK58_14310 3007268866fce3361803eec06182702f 392 ProSitePatterns PS00617 RecF protein signature 1. 139 159 - T 11-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 AMK58_14310 3007268866fce3361803eec06182702f 392 SUPERFAMILY SSF52540 10 371 8.88E-35 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_14310 3007268866fce3361803eec06182702f 392 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 392 84.018 T 11-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 AMK58_14310 3007268866fce3361803eec06182702f 392 Gene3D G3DSA:1.20.1050.90 142 332 1.5E-75 T 11-10-2018 AMK58_14310 3007268866fce3361803eec06182702f 392 ProSitePatterns PS00618 RecF protein signature 2. 333 351 - T 11-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 AMK58_14310 3007268866fce3361803eec06182702f 392 SMART SM00382 28 388 2.7E-4 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_14310 3007268866fce3361803eec06182702f 392 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 8 368 6.1E-49 T 11-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 AMK58_14310 3007268866fce3361803eec06182702f 392 Pfam PF02463 RecF/RecN/SMC N terminal domain 9 356 2.3E-14 T 11-10-2018 IPR003395 RecF/RecN/SMC, N-terminal AMK58_14310 3007268866fce3361803eec06182702f 392 Gene3D G3DSA:3.40.50.300 12 368 1.5E-75 T 11-10-2018 AMK58_02180 ec9796f547acd8fd2e72bf139507d291 188 SUPERFAMILY SSF55826 17 177 9.03E-45 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 AMK58_02180 ec9796f547acd8fd2e72bf139507d291 188 Gene3D G3DSA:3.90.960.10 10 180 5.2E-50 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 AMK58_02180 ec9796f547acd8fd2e72bf139507d291 188 Pfam PF04073 Aminoacyl-tRNA editing domain 38 163 2.0E-26 T 11-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AMK58_01900 973b6721f14975bf2fe22e2d7dd6620f 262 SUPERFAMILY SSF52540 4 235 2.3E-70 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_01900 973b6721f14975bf2fe22e2d7dd6620f 262 Pfam PF00005 ABC transporter 28 164 9.4E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_01900 973b6721f14975bf2fe22e2d7dd6620f 262 SMART SM00382 34 215 6.5E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_01900 973b6721f14975bf2fe22e2d7dd6620f 262 Gene3D G3DSA:3.40.50.300 3 257 1.0E-62 T 11-10-2018 AMK58_14495 43880e7ac5a9f2666548b184bb9527c3 599 Gene3D G3DSA:1.25.40.10 3 225 3.8E-45 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_14495 43880e7ac5a9f2666548b184bb9527c3 599 SMART SM00028 35 68 0.23 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14495 43880e7ac5a9f2666548b184bb9527c3 599 SMART SM00028 69 102 480.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14495 43880e7ac5a9f2666548b184bb9527c3 599 SMART SM00028 171 204 0.0012 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14495 43880e7ac5a9f2666548b184bb9527c3 599 SMART SM00028 103 136 0.33 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14495 43880e7ac5a9f2666548b184bb9527c3 599 SMART SM00028 137 170 13.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14495 43880e7ac5a9f2666548b184bb9527c3 599 SMART SM00028 1 34 420.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14495 43880e7ac5a9f2666548b184bb9527c3 599 Pfam PF13432 Tetratricopeptide repeat 83 135 0.0037 T 11-10-2018 AMK58_14495 43880e7ac5a9f2666548b184bb9527c3 599 Pfam PF13432 Tetratricopeptide repeat 7 69 8.6E-7 T 11-10-2018 AMK58_14495 43880e7ac5a9f2666548b184bb9527c3 599 Pfam PF14559 Tetratricopeptide repeat 150 207 6.2E-7 T 11-10-2018 AMK58_14495 43880e7ac5a9f2666548b184bb9527c3 599 SUPERFAMILY SSF53756 244 595 8.9E-18 T 11-10-2018 AMK58_14495 43880e7ac5a9f2666548b184bb9527c3 599 Gene3D G3DSA:3.40.50.2000 379 595 3.7E-17 T 11-10-2018 AMK58_14495 43880e7ac5a9f2666548b184bb9527c3 599 SUPERFAMILY SSF48452 11 215 1.77E-34 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_11880 66f0525eb89f767ce07cd903e819310e 179 Gene3D G3DSA:1.10.760.10 33 169 6.2E-43 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_11880 66f0525eb89f767ce07cd903e819310e 179 SUPERFAMILY SSF46626 70 173 1.72E-34 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_11880 66f0525eb89f767ce07cd903e819310e 179 Pfam PF00034 Cytochrome c 73 170 3.2E-9 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_11880 66f0525eb89f767ce07cd903e819310e 179 PRINTS PR00604 Class IA and IB cytochrome C signature 125 141 3.0E-18 T 11-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_11880 66f0525eb89f767ce07cd903e819310e 179 PRINTS PR00604 Class IA and IB cytochrome C signature 82 89 3.0E-18 T 11-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_11880 66f0525eb89f767ce07cd903e819310e 179 PRINTS PR00604 Class IA and IB cytochrome C signature 95 110 3.0E-18 T 11-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_11880 66f0525eb89f767ce07cd903e819310e 179 PRINTS PR00604 Class IA and IB cytochrome C signature 111 121 3.0E-18 T 11-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_11880 66f0525eb89f767ce07cd903e819310e 179 PRINTS PR00604 Class IA and IB cytochrome C signature 161 169 3.0E-18 T 11-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_11880 66f0525eb89f767ce07cd903e819310e 179 PRINTS PR00604 Class IA and IB cytochrome C signature 144 154 3.0E-18 T 11-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_20685 031e3472053d6fd06ff26e3f3913dc5a 260 SUPERFAMILY SSF54001 54 247 3.24E-28 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily AMK58_20685 031e3472053d6fd06ff26e3f3913dc5a 260 Gene3D G3DSA:3.90.70.30 43 251 1.3E-39 T 11-10-2018 IPR038156 Phytochelatin synthase, N-terminal domain superfamily MetaCyc: PWY-6745 AMK58_20685 031e3472053d6fd06ff26e3f3913dc5a 260 Pfam PF05023 Phytochelatin synthase 50 239 1.0E-26 T 11-10-2018 IPR007719 Phytochelatin synthase, N-terminal catalytic domain GO:0010038|GO:0016756|GO:0046872|GO:0046938 MetaCyc: PWY-6745 AMK58_12130 85a365896b6a86386f972434c5edf3be 258 Gene3D G3DSA:3.40.50.2300 133 238 1.9E-8 T 11-10-2018 AMK58_12130 85a365896b6a86386f972434c5edf3be 258 Pfam PF01627 Hpt domain 14 110 8.9E-12 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMK58_12130 85a365896b6a86386f972434c5edf3be 258 SUPERFAMILY SSF52172 138 235 5.98E-12 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_12130 85a365896b6a86386f972434c5edf3be 258 Gene3D G3DSA:1.20.120.160 8 132 5.8E-12 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMK58_12130 85a365896b6a86386f972434c5edf3be 258 SUPERFAMILY SSF47226 15 116 3.53E-13 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMK58_18750 518cc4cd8a14013f11eca4b6be56519e 313 SUPERFAMILY SSF63712 17 191 2.09E-8 T 11-10-2018 IPR036734 Neurotransmitter-gated ion-channel ligand-binding domain superfamily GO:0005230|GO:0006811|GO:0016021 AMK58_18750 518cc4cd8a14013f11eca4b6be56519e 313 Gene3D G3DSA:2.70.170.10 82 190 9.4E-10 T 11-10-2018 IPR036734 Neurotransmitter-gated ion-channel ligand-binding domain superfamily GO:0005230|GO:0006811|GO:0016021 AMK58_18750 518cc4cd8a14013f11eca4b6be56519e 313 Gene3D G3DSA:1.20.58.390 191 313 1.3E-13 T 11-10-2018 AMK58_18750 518cc4cd8a14013f11eca4b6be56519e 313 SUPERFAMILY SSF90112 207 309 7.19E-5 T 11-10-2018 IPR036719 Neurotransmitter-gated ion-channel transmembrane domain superfamily GO:0006811|GO:0016021 AMK58_21325 7d0c66972bb07c8e80db3002112087d9 374 Gene3D G3DSA:3.40.50.2300 90 337 1.0E-62 T 11-10-2018 AMK58_21325 7d0c66972bb07c8e80db3002112087d9 374 Pfam PF00356 Bacterial regulatory proteins, lacI family 30 75 2.3E-16 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMK58_21325 7d0c66972bb07c8e80db3002112087d9 374 SUPERFAMILY SSF47413 28 86 7.11E-16 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMK58_21325 7d0c66972bb07c8e80db3002112087d9 374 SUPERFAMILY SSF53822 85 353 1.11E-56 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMK58_21325 7d0c66972bb07c8e80db3002112087d9 374 ProSitePatterns PS00356 LacI-type HTH domain signature. 31 49 - T 11-10-2018 AMK58_21325 7d0c66972bb07c8e80db3002112087d9 374 Pfam PF13377 Periplasmic binding protein-like domain 199 360 1.8E-35 T 11-10-2018 AMK58_21325 7d0c66972bb07c8e80db3002112087d9 374 Gene3D G3DSA:1.10.260.40 19 85 5.8E-19 T 11-10-2018 AMK58_21325 7d0c66972bb07c8e80db3002112087d9 374 Gene3D G3DSA:3.40.50.2300 187 321 1.0E-62 T 11-10-2018 AMK58_21325 7d0c66972bb07c8e80db3002112087d9 374 SMART SM00354 28 98 3.3E-28 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMK58_28290 1eaa38ac90700c5e5bc3ab142a037063 139 Pfam PF00571 CBS domain 3 52 1.5E-10 T 11-10-2018 IPR000644 CBS domain AMK58_28290 1eaa38ac90700c5e5bc3ab142a037063 139 Pfam PF00571 CBS domain 67 118 7.6E-10 T 11-10-2018 IPR000644 CBS domain AMK58_28290 1eaa38ac90700c5e5bc3ab142a037063 139 SUPERFAMILY SSF54631 1 117 5.56E-32 T 11-10-2018 AMK58_28290 1eaa38ac90700c5e5bc3ab142a037063 139 Gene3D G3DSA:3.10.580.10 1 137 4.5E-34 T 11-10-2018 AMK58_28290 1eaa38ac90700c5e5bc3ab142a037063 139 SMART SM00116 10 57 1.3E-4 T 11-10-2018 IPR000644 CBS domain AMK58_28290 1eaa38ac90700c5e5bc3ab142a037063 139 SMART SM00116 74 122 1.4E-6 T 11-10-2018 IPR000644 CBS domain AMK58_02445 aa3009726682fce79380ab32179318bc 305 TIGRFAM TIGR03212 uraD_N-term-dom: putative urate catabolism protein 5 301 4.1E-170 T 11-10-2018 IPR017625 PuuE allantoinase/chitin deacetylase 1 AMK58_02445 aa3009726682fce79380ab32179318bc 305 SUPERFAMILY SSF88713 4 301 1.33E-95 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMK58_02445 aa3009726682fce79380ab32179318bc 305 Pfam PF01522 Polysaccharide deacetylase 76 164 2.3E-11 T 11-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMK58_02445 aa3009726682fce79380ab32179318bc 305 Gene3D G3DSA:3.20.20.370 1 305 1.5E-102 T 11-10-2018 AMK58_15795 7c165783319daff35c67ab9ecec64d0d 232 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 228 5.5E-19 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_15795 7c165783319daff35c67ab9ecec64d0d 232 Gene3D G3DSA:1.10.10.10 127 231 2.1E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_15795 7c165783319daff35c67ab9ecec64d0d 232 Gene3D G3DSA:3.40.50.2300 1 126 1.4E-38 T 11-10-2018 AMK58_15795 7c165783319daff35c67ab9ecec64d0d 232 SUPERFAMILY SSF52172 5 128 2.42E-41 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_15795 7c165783319daff35c67ab9ecec64d0d 232 SUPERFAMILY SSF46894 133 230 2.21E-20 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMK58_15795 7c165783319daff35c67ab9ecec64d0d 232 SMART SM00448 7 117 3.5E-43 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_15795 7c165783319daff35c67ab9ecec64d0d 232 Pfam PF00072 Response regulator receiver domain 9 117 1.1E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_15795 7c165783319daff35c67ab9ecec64d0d 232 SMART SM00862 155 228 4.7E-20 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_07880 73d419b9883dcca8fc8cb61c6fef8307 330 TIGRFAM TIGR03718 R_switched_Alx: integral membrane protein, TerC family 16 321 1.1E-123 T 11-10-2018 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 AMK58_07880 73d419b9883dcca8fc8cb61c6fef8307 330 Pfam PF03741 Integral membrane protein TerC family 83 289 8.0E-57 T 11-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 AMK58_13020 e8305cf79132eb37e155ce8c26e001ce 597 Pfam PF13432 Tetratricopeptide repeat 14 72 1.5E-5 T 11-10-2018 AMK58_13020 e8305cf79132eb37e155ce8c26e001ce 597 Pfam PF13432 Tetratricopeptide repeat 78 138 0.0062 T 11-10-2018 AMK58_13020 e8305cf79132eb37e155ce8c26e001ce 597 Gene3D G3DSA:1.25.40.10 158 350 7.9E-11 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_13020 e8305cf79132eb37e155ce8c26e001ce 597 Gene3D G3DSA:1.25.40.10 8 152 1.0E-25 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_13020 e8305cf79132eb37e155ce8c26e001ce 597 SUPERFAMILY SSF48452 11 221 5.24E-27 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_13020 e8305cf79132eb37e155ce8c26e001ce 597 SMART SM00028 174 207 20.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_13020 e8305cf79132eb37e155ce8c26e001ce 597 SMART SM00028 38 71 0.81 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_13020 e8305cf79132eb37e155ce8c26e001ce 597 SMART SM00028 72 105 140.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_13020 e8305cf79132eb37e155ce8c26e001ce 597 SMART SM00028 106 139 4.2E-4 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_26020 0cd21dec095d5ca86a4d01f7fe0d5682 393 Gene3D G3DSA:3.90.1300.10 3 393 6.3E-101 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMK58_26020 0cd21dec095d5ca86a4d01f7fe0d5682 393 SUPERFAMILY SSF75304 3 390 1.19E-95 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMK58_26020 0cd21dec095d5ca86a4d01f7fe0d5682 393 ProSitePatterns PS00571 Amidases signature. 108 139 - T 11-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 AMK58_26020 0cd21dec095d5ca86a4d01f7fe0d5682 393 Pfam PF01425 Amidase 289 385 4.0E-8 T 11-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMK58_26020 0cd21dec095d5ca86a4d01f7fe0d5682 393 Pfam PF01425 Amidase 18 177 3.7E-54 T 11-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMK58_22510 bc9123a4636c97e0828b9fed1c0fdae2 149 Gene3D G3DSA:3.10.129.10 1 144 4.5E-48 T 11-10-2018 AMK58_22510 bc9123a4636c97e0828b9fed1c0fdae2 149 SUPERFAMILY SSF54637 4 146 6.5E-41 T 11-10-2018 IPR029069 HotDog domain superfamily AMK58_22510 bc9123a4636c97e0828b9fed1c0fdae2 149 Pfam PF01575 MaoC like domain 16 122 2.0E-26 T 11-10-2018 IPR002539 MaoC-like dehydratase domain AMK58_19965 0130e1eedf95588493a6dd0b1ccf9b04 395 SUPERFAMILY SSF55729 189 336 2.49E-17 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_19965 0130e1eedf95588493a6dd0b1ccf9b04 395 Pfam PF13480 Acetyltransferase (GNAT) domain 196 343 8.0E-27 T 11-10-2018 IPR038740 BioF2-like, acetyltransferase domain KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 AMK58_24840 549c21242e9955fb6aa907f48de60be1 393 Gene3D G3DSA:3.40.50.2300 200 380 1.5E-29 T 11-10-2018 AMK58_24840 549c21242e9955fb6aa907f48de60be1 393 Pfam PF04392 ABC transporter substrate binding protein 132 379 2.7E-11 T 11-10-2018 IPR007487 ABC transporter, substrate-binding protein AMK58_24840 549c21242e9955fb6aa907f48de60be1 393 Gene3D G3DSA:3.40.50.2300 143 361 1.5E-29 T 11-10-2018 AMK58_28515 7ce4047cd5aa02b2508c7b6bdadbbb80 361 Pfam PF03239 Iron permease FTR1 family 69 216 1.8E-14 T 11-10-2018 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0016020|GO:0033573|GO:0034755 AMK58_06465 82d69752d951c10e9f304d22de35ae71 95 TIGRFAM TIGR03859 PQQ_PqqD: coenzyme PQQ biosynthesis protein PqqD 12 93 1.3E-13 T 11-10-2018 IPR022479 Coenzyme PQQ synthesis D, bacteria GO:0018189|GO:0048038 AMK58_06465 82d69752d951c10e9f304d22de35ae71 95 Gene3D G3DSA:1.10.10.1150 2 94 6.9E-28 T 11-10-2018 AMK58_06465 82d69752d951c10e9f304d22de35ae71 95 Pfam PF05402 Coenzyme PQQ synthesis protein D (PqqD) 30 93 3.6E-10 T 11-10-2018 IPR008792 Coenzyme PQQ synthesis D AMK58_00150 14f4b55c56ed3dda54b0cb41f35fae47 401 PIRSF PIRSF028704 1 398 1.1E-65 T 11-10-2018 IPR014550 Uncharacterised conserved protein UCP028704, OpgC AMK58_00150 14f4b55c56ed3dda54b0cb41f35fae47 401 Pfam PF10129 OpgC protein 3 385 7.2E-67 T 11-10-2018 IPR014550 Uncharacterised conserved protein UCP028704, OpgC AMK58_03825 9ec74ac1b83a7ada4315056b52fb9641 153 Gene3D G3DSA:1.10.3680.10 1 137 1.4E-18 T 11-10-2018 IPR029024 TerB-like AMK58_03825 9ec74ac1b83a7ada4315056b52fb9641 153 SUPERFAMILY SSF158682 19 146 7.72E-26 T 11-10-2018 IPR029024 TerB-like AMK58_03825 9ec74ac1b83a7ada4315056b52fb9641 153 Pfam PF05099 Tellurite resistance protein TerB 8 138 7.0E-32 T 11-10-2018 IPR007791 Co-chaperone DjlA, N-terminal AMK58_04055 c805bbe1f6650544566802247d57b9fa 71 Pfam PF09413 Putative prokaryotic signal transducing protein 1 65 4.7E-20 T 11-10-2018 IPR018551 Domain of unknown function DUF2007 AMK58_04055 c805bbe1f6650544566802247d57b9fa 71 SUPERFAMILY SSF54913 1 68 8.89E-23 T 11-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta AMK58_04055 c805bbe1f6650544566802247d57b9fa 71 Gene3D G3DSA:3.30.70.790 1 70 5.7E-30 T 11-10-2018 IPR036675 UreE, C-terminal domain superfamily GO:0016151|GO:0019627|GO:0065003 AMK58_16410 1f76eae2d47227e11b4bf4f3d5e3eccd 283 SUPERFAMILY SSF56529 61 280 3.92E-82 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AMK58_16410 1f76eae2d47227e11b4bf4f3d5e3eccd 283 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 72 279 9.8E-74 T 11-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 AMK58_16410 1f76eae2d47227e11b4bf4f3d5e3eccd 283 Gene3D G3DSA:3.90.850.10 67 282 1.4E-87 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AMK58_08080 e9c4c45b7efea6730840e553a1f246b0 183 Gene3D G3DSA:3.30.450.20 17 172 2.7E-21 T 11-10-2018 AMK58_08080 e9c4c45b7efea6730840e553a1f246b0 183 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 28 108 4.1E-13 T 11-10-2018 IPR000014 PAS domain AMK58_08080 e9c4c45b7efea6730840e553a1f246b0 183 SUPERFAMILY SSF55785 25 109 7.25E-24 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_08080 e9c4c45b7efea6730840e553a1f246b0 183 Pfam PF00989 PAS fold 29 111 2.1E-11 T 11-10-2018 IPR013767 PAS fold GO:0006355 AMK58_13565 2910ce386c9877835110d509268bdd63 457 Gene3D G3DSA:1.25.40.10 62 247 9.6E-10 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_13565 2910ce386c9877835110d509268bdd63 457 SUPERFAMILY SSF48452 64 205 2.15E-10 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_04835 3fee15e35e4db85b0188b35b5b7a0f03 599 Gene3D G3DSA:1.20.140.10 289 453 9.0E-51 T 11-10-2018 AMK58_04835 3fee15e35e4db85b0188b35b5b7a0f03 599 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 4 28 1.5E-7 T 11-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria AMK58_04835 3fee15e35e4db85b0188b35b5b7a0f03 599 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 466 594 1.6E-27 T 11-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain AMK58_04835 3fee15e35e4db85b0188b35b5b7a0f03 599 Gene3D G3DSA:1.10.540.10 33 158 3.4E-16 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMK58_04835 3fee15e35e4db85b0188b35b5b7a0f03 599 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 162 271 4.3E-17 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMK58_04835 3fee15e35e4db85b0188b35b5b7a0f03 599 Gene3D G3DSA:2.40.110.10 160 288 1.1E-26 T 11-10-2018 AMK58_04835 3fee15e35e4db85b0188b35b5b7a0f03 599 SUPERFAMILY SSF56645 38 271 2.2E-58 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMK58_04835 3fee15e35e4db85b0188b35b5b7a0f03 599 SUPERFAMILY SSF47203 282 460 3.06E-47 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMK58_04835 3fee15e35e4db85b0188b35b5b7a0f03 599 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 40 157 1.3E-11 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMK58_04835 3fee15e35e4db85b0188b35b5b7a0f03 599 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 284 450 3.8E-28 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMK58_18035 59d4f87a7fe2f79a18b7ec13026605e3 338 Gene3D G3DSA:3.40.1090.10 12 110 1.2E-18 T 11-10-2018 AMK58_18035 59d4f87a7fe2f79a18b7ec13026605e3 338 Gene3D G3DSA:3.40.1090.10 111 208 1.0E-14 T 11-10-2018 AMK58_18035 59d4f87a7fe2f79a18b7ec13026605e3 338 Pfam PF01734 Patatin-like phospholipase 26 184 3.2E-26 T 11-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 AMK58_18035 59d4f87a7fe2f79a18b7ec13026605e3 338 SUPERFAMILY SSF52151 21 329 2.3E-53 T 11-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase AMK58_02810 5e649a03a020669e11f20d6ba5467817 119 ProDom PD076485 YNEG CYTOPLASMIC ECS2130 STY1535 1 112 1.0E-34 T 11-10-2018 IPR020378 Protein of unknown function DUF4186 AMK58_02810 5e649a03a020669e11f20d6ba5467817 119 Pfam PF13811 Domain of unknown function (DUF4186) 5 112 3.1E-44 T 11-10-2018 IPR020378 Protein of unknown function DUF4186 AMK58_23980 97e0f419ec270893383934fea4250cd0 291 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 280 1.5E-17 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_23980 97e0f419ec270893383934fea4250cd0 291 Gene3D G3DSA:1.10.3720.10 49 286 5.1E-68 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_23980 97e0f419ec270893383934fea4250cd0 291 SUPERFAMILY SSF161098 51 277 6.41E-62 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_11180 f1489f995229eb53ec0515b4e9295f3f 81 Hamap MF_01217 Acyl carrier protein [acpP]. 5 79 14.203 T 11-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 AMK58_11180 f1489f995229eb53ec0515b4e9295f3f 81 Pfam PF00550 Phosphopantetheine attachment site 9 75 6.8E-11 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain AMK58_11180 f1489f995229eb53ec0515b4e9295f3f 81 SUPERFAMILY SSF47336 2 79 1.44E-18 T 11-10-2018 IPR036736 ACP-like superfamily AMK58_11180 f1489f995229eb53ec0515b4e9295f3f 81 Gene3D G3DSA:1.10.1200.10 1 77 3.7E-18 T 11-10-2018 IPR036736 ACP-like superfamily AMK58_04460 2d7c763ee359389941e9f6ddadbcb1e6 400 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 214 234 - T 11-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site AMK58_04460 2d7c763ee359389941e9f6ddadbcb1e6 400 Pfam PF00266 Aminotransferase class-V 20 393 1.4E-63 T 11-10-2018 IPR000192 Aminotransferase class V domain AMK58_04460 2d7c763ee359389941e9f6ddadbcb1e6 400 SUPERFAMILY SSF53383 4 399 3.02E-85 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_04460 2d7c763ee359389941e9f6ddadbcb1e6 400 Gene3D G3DSA:3.90.1150.10 15 394 7.6E-108 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_04460 2d7c763ee359389941e9f6ddadbcb1e6 400 Gene3D G3DSA:3.40.640.10 30 297 7.6E-108 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_12100 98f80ba41fc600b734922dee40936523 582 Pfam PF00563 EAL domain 323 561 5.3E-78 T 11-10-2018 IPR001633 EAL domain AMK58_12100 98f80ba41fc600b734922dee40936523 582 Gene3D G3DSA:3.20.20.450 320 574 2.0E-103 T 11-10-2018 IPR035919 EAL domain superfamily AMK58_12100 98f80ba41fc600b734922dee40936523 582 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 26 144 6.0E-10 T 11-10-2018 IPR000014 PAS domain AMK58_12100 98f80ba41fc600b734922dee40936523 582 SMART SM00052 316 566 1.3E-124 T 11-10-2018 IPR001633 EAL domain AMK58_12100 98f80ba41fc600b734922dee40936523 582 Pfam PF08448 PAS fold 31 140 2.5E-17 T 11-10-2018 IPR013656 PAS fold-4 AMK58_12100 98f80ba41fc600b734922dee40936523 582 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 147 302 1.2E-14 T 11-10-2018 IPR000160 GGDEF domain AMK58_12100 98f80ba41fc600b734922dee40936523 582 SUPERFAMILY SSF141868 321 569 3.79E-90 T 11-10-2018 IPR035919 EAL domain superfamily AMK58_12100 98f80ba41fc600b734922dee40936523 582 Gene3D G3DSA:3.30.70.270 147 319 5.7E-29 T 11-10-2018 AMK58_12100 98f80ba41fc600b734922dee40936523 582 Pfam PF00990 Diguanylate cyclase, GGDEF domain 149 301 2.6E-23 T 11-10-2018 IPR000160 GGDEF domain AMK58_12100 98f80ba41fc600b734922dee40936523 582 SMART SM00267 138 306 1.5E-19 T 11-10-2018 IPR000160 GGDEF domain AMK58_12100 98f80ba41fc600b734922dee40936523 582 SUPERFAMILY SSF55785 25 136 1.06E-15 T 11-10-2018 IPR035965 PAS domain superfamily AMK58_12100 98f80ba41fc600b734922dee40936523 582 SUPERFAMILY SSF55073 155 308 2.04E-23 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_12100 98f80ba41fc600b734922dee40936523 582 SMART SM00091 25 91 7.9E-6 T 11-10-2018 IPR000014 PAS domain AMK58_12100 98f80ba41fc600b734922dee40936523 582 Gene3D G3DSA:3.30.450.20 22 146 7.1E-21 T 11-10-2018 AMK58_21585 c15cd42bc08f1c89f56f030c433749fd 208 SMART SM00260 68 199 3.3E-5 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMK58_21585 c15cd42bc08f1c89f56f030c433749fd 208 SUPERFAMILY SSF50341 81 201 1.09E-16 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 AMK58_21585 c15cd42bc08f1c89f56f030c433749fd 208 Gene3D G3DSA:2.40.50.180 94 159 4.8E-11 T 11-10-2018 AMK58_21585 c15cd42bc08f1c89f56f030c433749fd 208 Pfam PF01584 CheW-like domain 83 201 1.3E-15 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMK58_21585 c15cd42bc08f1c89f56f030c433749fd 208 Gene3D G3DSA:2.30.30.40 83 188 4.8E-11 T 11-10-2018 AMK58_00245 82f7ce2a2e57856ed9ff388562472172 622 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 88 494 1.2E-55 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain AMK58_00245 82f7ce2a2e57856ed9ff388562472172 622 SUPERFAMILY SSF53850 64 604 7.06E-70 T 11-10-2018 AMK58_00245 82f7ce2a2e57856ed9ff388562472172 622 Gene3D G3DSA:3.10.105.10 330 581 2.4E-33 T 11-10-2018 AMK58_25830 15af5a204095382fa1ec03f5ed8a1b01 302 SUPERFAMILY SSF46785 4 85 1.05E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_25830 15af5a204095382fa1ec03f5ed8a1b01 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 4.6E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_25830 15af5a204095382fa1ec03f5ed8a1b01 302 SUPERFAMILY SSF53850 90 292 1.54E-47 T 11-10-2018 AMK58_25830 15af5a204095382fa1ec03f5ed8a1b01 302 Gene3D G3DSA:1.10.10.10 3 87 1.0E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_25830 15af5a204095382fa1ec03f5ed8a1b01 302 Pfam PF03466 LysR substrate binding domain 89 291 2.5E-49 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_25830 15af5a204095382fa1ec03f5ed8a1b01 302 Gene3D G3DSA:3.40.190.10 161 263 1.1E-66 T 11-10-2018 AMK58_25830 15af5a204095382fa1ec03f5ed8a1b01 302 Gene3D G3DSA:3.40.190.10 91 288 1.1E-66 T 11-10-2018 AMK58_28725 92d2f10f9e9a08af7821a7b540639d78 252 Pfam PF13489 Methyltransferase domain 83 234 3.8E-18 T 11-10-2018 AMK58_28725 92d2f10f9e9a08af7821a7b540639d78 252 Gene3D G3DSA:3.40.50.150 82 248 2.9E-30 T 11-10-2018 AMK58_28725 92d2f10f9e9a08af7821a7b540639d78 252 SUPERFAMILY SSF53335 80 237 1.52E-33 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_29260 92d2f10f9e9a08af7821a7b540639d78 252 Pfam PF13489 Methyltransferase domain 83 234 3.8E-18 T 11-10-2018 AMK58_29260 92d2f10f9e9a08af7821a7b540639d78 252 Gene3D G3DSA:3.40.50.150 82 248 2.9E-30 T 11-10-2018 AMK58_29260 92d2f10f9e9a08af7821a7b540639d78 252 SUPERFAMILY SSF53335 80 237 1.52E-33 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_15980 16c5a21b3c53c762a405551c52ae0fd8 259 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 253 5.2E-39 T 11-10-2018 AMK58_15980 16c5a21b3c53c762a405551c52ae0fd8 259 Gene3D G3DSA:3.40.50.720 1 259 5.5E-64 T 11-10-2018 AMK58_15980 16c5a21b3c53c762a405551c52ae0fd8 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 7.3E-23 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15980 16c5a21b3c53c762a405551c52ae0fd8 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 7.3E-23 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15980 16c5a21b3c53c762a405551c52ae0fd8 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 7.3E-23 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15980 16c5a21b3c53c762a405551c52ae0fd8 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 7.3E-23 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15980 16c5a21b3c53c762a405551c52ae0fd8 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 7.3E-23 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15980 16c5a21b3c53c762a405551c52ae0fd8 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 7.3E-23 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15980 16c5a21b3c53c762a405551c52ae0fd8 259 SUPERFAMILY SSF51735 7 256 1.23E-61 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_12985 00c50073846a3b40c19a9819821682db 175 ProSitePatterns PS01117 MarR-type HTH domain signature. 81 115 - T 11-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site AMK58_12985 00c50073846a3b40c19a9819821682db 175 Gene3D G3DSA:1.10.10.10 7 159 2.0E-36 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_12985 00c50073846a3b40c19a9819821682db 175 PRINTS PR00598 Bacterial regulatory protein MarR family signature 66 82 3.9E-11 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_12985 00c50073846a3b40c19a9819821682db 175 PRINTS PR00598 Bacterial regulatory protein MarR family signature 83 98 3.9E-11 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_12985 00c50073846a3b40c19a9819821682db 175 PRINTS PR00598 Bacterial regulatory protein MarR family signature 102 118 3.9E-11 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_12985 00c50073846a3b40c19a9819821682db 175 PRINTS PR00598 Bacterial regulatory protein MarR family signature 132 152 3.9E-11 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_12985 00c50073846a3b40c19a9819821682db 175 SMART SM00347 42 142 7.1E-14 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_12985 00c50073846a3b40c19a9819821682db 175 SUPERFAMILY SSF46785 16 158 9.81E-30 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_12985 00c50073846a3b40c19a9819821682db 175 Pfam PF12802 MarR family 48 105 5.6E-13 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_04800 767fc3b35d29d88c636759a03aeb7a4c 41 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 16 41 0.009 T 11-10-2018 AMK58_04800 767fc3b35d29d88c636759a03aeb7a4c 41 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 41 16.829 T 11-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_04800 767fc3b35d29d88c636759a03aeb7a4c 41 SUPERFAMILY SSF57840 1 41 1.31E-13 T 11-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_04800 767fc3b35d29d88c636759a03aeb7a4c 41 Pfam PF00444 Ribosomal protein L36 1 41 3.9E-17 T 11-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_04800 767fc3b35d29d88c636759a03aeb7a4c 41 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 41 1.1E-7 T 11-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_04800 767fc3b35d29d88c636759a03aeb7a4c 41 ProSitePatterns PS00828 Ribosomal protein L36 signature. 14 40 - T 11-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_26135 5dc15769160655060696978e33d07ac0 265 Pfam PF00005 ABC transporter 21 167 1.6E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_26135 5dc15769160655060696978e33d07ac0 265 SUPERFAMILY SSF52540 3 232 6.06E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_26135 5dc15769160655060696978e33d07ac0 265 SMART SM00382 27 219 3.7E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_26135 5dc15769160655060696978e33d07ac0 265 Gene3D G3DSA:3.40.50.300 2 257 4.5E-66 T 11-10-2018 AMK58_26135 5dc15769160655060696978e33d07ac0 265 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_10700 80f5ed69376f43f94d0b600940845de1 318 Gene3D G3DSA:3.40.50.1110 195 299 1.6E-5 T 11-10-2018 IPR036514 SGNH hydrolase superfamily AMK58_10700 80f5ed69376f43f94d0b600940845de1 318 SUPERFAMILY SSF52266 47 292 2.9E-8 T 11-10-2018 AMK58_01520 cb19d7b40248dab02fd1be83b6f00cd4 277 SUPERFAMILY SSF53850 5 274 1.32E-61 T 11-10-2018 AMK58_01520 cb19d7b40248dab02fd1be83b6f00cd4 277 SMART SM00079 28 272 4.9E-4 T 11-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 AMK58_01520 cb19d7b40248dab02fd1be83b6f00cd4 277 Gene3D G3DSA:3.40.190.10 31 270 5.8E-79 T 11-10-2018 AMK58_01520 cb19d7b40248dab02fd1be83b6f00cd4 277 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 29 271 2.0E-54 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMK58_01520 cb19d7b40248dab02fd1be83b6f00cd4 277 Gene3D G3DSA:3.40.190.10 114 229 5.8E-79 T 11-10-2018 AMK58_01520 cb19d7b40248dab02fd1be83b6f00cd4 277 SMART SM00062 28 273 1.6E-51 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMK58_07310 93ab457a0cd218f226d335104c46e6d6 482 SUPERFAMILY SSF53271 250 469 9.01E-77 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like AMK58_07310 93ab457a0cd218f226d335104c46e6d6 482 PIRSF PIRSF000485 12 477 9.7E-171 T 11-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 AMK58_07310 93ab457a0cd218f226d335104c46e6d6 482 Pfam PF00156 Phosphoribosyl transferase domain 269 385 4.0E-11 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMK58_07310 93ab457a0cd218f226d335104c46e6d6 482 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 15 461 46.344 T 11-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 AMK58_07310 93ab457a0cd218f226d335104c46e6d6 482 Gene3D G3DSA:3.40.50.2020 275 439 1.7E-157 T 11-10-2018 AMK58_07310 93ab457a0cd218f226d335104c46e6d6 482 SUPERFAMILY SSF56235 16 257 1.29E-66 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMK58_07310 93ab457a0cd218f226d335104c46e6d6 482 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 16 462 3.2E-158 T 11-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 AMK58_07310 93ab457a0cd218f226d335104c46e6d6 482 Gene3D G3DSA:3.60.20.10 16 463 1.7E-157 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMK58_07310 93ab457a0cd218f226d335104c46e6d6 482 Pfam PF13522 Glutamine amidotransferase domain 82 209 2.2E-19 T 11-10-2018 AMK58_23180 89bba3780d3dd0ec8cfb774befd81fc3 539 Gene3D G3DSA:3.40.190.10 213 526 2.3E-164 T 11-10-2018 AMK58_23180 89bba3780d3dd0ec8cfb774befd81fc3 539 SUPERFAMILY SSF53850 33 535 7.24E-151 T 11-10-2018 AMK58_23180 89bba3780d3dd0ec8cfb774befd81fc3 539 Gene3D G3DSA:3.10.105.10 294 513 2.3E-164 T 11-10-2018 AMK58_23180 89bba3780d3dd0ec8cfb774befd81fc3 539 PIRSF PIRSF002741 7 538 5.7E-115 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMK58_23180 89bba3780d3dd0ec8cfb774befd81fc3 539 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 76 455 1.5E-93 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain AMK58_23180 89bba3780d3dd0ec8cfb774befd81fc3 539 Gene3D G3DSA:3.90.76.10 47 212 2.3E-164 T 11-10-2018 AMK58_03545 47a941501e90e186112d4239cf2758b8 195 SUPERFAMILY SSF52821 100 190 1.83E-14 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily AMK58_03545 47a941501e90e186112d4239cf2758b8 195 Gene3D G3DSA:3.40.250.10 97 188 1.3E-10 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily AMK58_03545 47a941501e90e186112d4239cf2758b8 195 TIGRFAM TIGR03865 PQQ_CXXCW: PQQ-dependent catabolism-associated CXXCW motif protein 33 189 3.8E-58 T 11-10-2018 IPR022376 PQQ-dependent catabolism-associated CXXCW motif AMK58_27550 16020f6d38b88bccd90c1a968b57924c 398 Hamap MF_00106 Mannonate dehydratase [uxuA]. 1 398 185.937 T 11-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 AMK58_27550 16020f6d38b88bccd90c1a968b57924c 398 SUPERFAMILY SSF51658 1 388 2.02E-76 T 11-10-2018 IPR036237 Xylose isomerase-like superfamily AMK58_27550 16020f6d38b88bccd90c1a968b57924c 398 PIRSF PIRSF016049 1 396 7.7E-164 T 11-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 AMK58_27550 16020f6d38b88bccd90c1a968b57924c 398 TIGRFAM TIGR00695 uxuA: mannonate dehydratase 1 393 3.9E-155 T 11-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 AMK58_27550 16020f6d38b88bccd90c1a968b57924c 398 Pfam PF03786 D-mannonate dehydratase (UxuA) 1 391 9.2E-127 T 11-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 AMK58_14195 d27d7e4577b68e347b18d07524a2eb68 497 Gene3D G3DSA:3.60.110.10 227 465 1.7E-14 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMK58_14195 d27d7e4577b68e347b18d07524a2eb68 497 SUPERFAMILY SSF56317 232 456 7.46E-19 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMK58_10055 5dcf494f5eee77ea34024879501517bb 136 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 5 135 2.2E-45 T 11-10-2018 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 AMK58_10055 5dcf494f5eee77ea34024879501517bb 136 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 11-10-2018 IPR019776 Flagellar basal body rod protein, conserved site AMK58_10055 5dcf494f5eee77ea34024879501517bb 136 Pfam PF00460 Flagella basal body rod protein 9 34 3.0E-7 T 11-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 AMK58_10055 5dcf494f5eee77ea34024879501517bb 136 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 89 132 1.9E-9 T 11-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain AMK58_28205 d86386ac51c0cc6204f717b95f10690d 100 ProSitePatterns PS00018 EF-hand calcium-binding domain. 43 55 - T 11-10-2018 IPR018247 EF-Hand 1, calcium-binding site AMK58_28205 d86386ac51c0cc6204f717b95f10690d 100 SUPERFAMILY SSF47473 37 79 8.12E-6 T 11-10-2018 IPR011992 EF-hand domain pair AMK58_02980 bf211f954f831eb9f5b3b0be6b04f261 676 SUPERFAMILY SSF51126 186 369 4.44E-23 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor AMK58_02980 bf211f954f831eb9f5b3b0be6b04f261 676 Gene3D G3DSA:2.160.20.10 159 295 4.7E-26 T 11-10-2018 IPR012334 Pectin lyase fold AMK58_02980 bf211f954f831eb9f5b3b0be6b04f261 676 Pfam PF12708 Pectate lyase superfamily protein 189 266 9.0E-16 T 11-10-2018 IPR024535 Pectate lyase superfamily protein AMK58_11645 5f6488a5fed5ee8514539d8b2cd10ca7 105 SUPERFAMILY SSF141091 1 102 6.41E-40 T 11-10-2018 IPR036164 L21-like superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_11645 5f6488a5fed5ee8514539d8b2cd10ca7 105 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 101 1.3E-35 T 11-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_11645 5f6488a5fed5ee8514539d8b2cd10ca7 105 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 103 28.054 T 11-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_11645 5f6488a5fed5ee8514539d8b2cd10ca7 105 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 101 3.9E-43 T 11-10-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_17810 f1f9a5263ab8062b24904fbe9908ae85 499 SMART SM00028 181 214 28.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_17810 f1f9a5263ab8062b24904fbe9908ae85 499 SMART SM00028 38 71 190.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_17810 f1f9a5263ab8062b24904fbe9908ae85 499 SMART SM00028 72 105 0.0014 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_17810 f1f9a5263ab8062b24904fbe9908ae85 499 SMART SM00028 4 37 52.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_17810 f1f9a5263ab8062b24904fbe9908ae85 499 SMART SM00028 106 139 0.4 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_17810 f1f9a5263ab8062b24904fbe9908ae85 499 SMART SM00028 215 248 10.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_17810 f1f9a5263ab8062b24904fbe9908ae85 499 Gene3D G3DSA:1.25.40.10 8 152 5.4E-27 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_17810 f1f9a5263ab8062b24904fbe9908ae85 499 SUPERFAMILY SSF48452 151 279 1.31E-19 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_17810 f1f9a5263ab8062b24904fbe9908ae85 499 Gene3D G3DSA:1.25.40.10 153 284 1.2E-19 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_17810 f1f9a5263ab8062b24904fbe9908ae85 499 Pfam PF13432 Tetratricopeptide repeat 79 137 2.6E-9 T 11-10-2018 AMK58_17810 f1f9a5263ab8062b24904fbe9908ae85 499 Pfam PF13432 Tetratricopeptide repeat 17 71 3.6E-4 T 11-10-2018 AMK58_17810 f1f9a5263ab8062b24904fbe9908ae85 499 Pfam PF13432 Tetratricopeptide repeat 153 213 0.012 T 11-10-2018 AMK58_17810 f1f9a5263ab8062b24904fbe9908ae85 499 Pfam PF13432 Tetratricopeptide repeat 220 278 0.0053 T 11-10-2018 AMK58_17810 f1f9a5263ab8062b24904fbe9908ae85 499 SUPERFAMILY SSF48452 8 155 2.51E-24 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_27220 819d6cd80fbf8160001558b88316fb58 250 SUPERFAMILY SSF52499 33 247 1.83E-21 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 AMK58_27220 819d6cd80fbf8160001558b88316fb58 250 Pfam PF00857 Isochorismatase family 33 213 4.4E-24 T 11-10-2018 IPR000868 Isochorismatase-like GO:0003824 AMK58_27220 819d6cd80fbf8160001558b88316fb58 250 Gene3D G3DSA:3.40.50.850 33 239 7.8E-23 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 AMK58_07835 8948f59389e8886a796e892d3dba72a0 383 Gene3D G3DSA:2.40.50.140 259 301 4.6E-10 T 11-10-2018 AMK58_07835 8948f59389e8886a796e892d3dba72a0 383 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_07835 8948f59389e8886a796e892d3dba72a0 383 Pfam PF00005 ABC transporter 40 181 1.5E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_07835 8948f59389e8886a796e892d3dba72a0 383 SUPERFAMILY SSF52540 24 264 3.64E-87 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_07835 8948f59389e8886a796e892d3dba72a0 383 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 54 381 2.3E-129 T 11-10-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 AMK58_07835 8948f59389e8886a796e892d3dba72a0 383 Gene3D G3DSA:3.40.50.300 18 258 4.0E-76 T 11-10-2018 AMK58_07835 8948f59389e8886a796e892d3dba72a0 383 SMART SM00382 48 231 1.5E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_07835 8948f59389e8886a796e892d3dba72a0 383 SUPERFAMILY SSF50331 257 381 1.91E-21 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMK58_07835 8948f59389e8886a796e892d3dba72a0 383 Gene3D G3DSA:2.40.50.100 302 372 4.6E-10 T 11-10-2018 AMK58_07835 8948f59389e8886a796e892d3dba72a0 383 Pfam PF08402 TOBE domain 299 381 5.4E-16 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMK58_07340 7a1e189e15a4e432d7af2a4478cefed8 263 Pfam PF00005 ABC transporter 27 176 8.5E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_07340 7a1e189e15a4e432d7af2a4478cefed8 263 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_07340 7a1e189e15a4e432d7af2a4478cefed8 263 SUPERFAMILY SSF52540 12 239 2.6E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_07340 7a1e189e15a4e432d7af2a4478cefed8 263 Gene3D G3DSA:3.40.50.300 11 257 2.2E-65 T 11-10-2018 AMK58_07340 7a1e189e15a4e432d7af2a4478cefed8 263 SMART SM00382 36 226 2.4E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_16295 e04edacfaaafea7fccda175cf7e853c4 298 Gene3D G3DSA:1.10.3720.10 79 292 5.3E-19 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_16295 e04edacfaaafea7fccda175cf7e853c4 298 SUPERFAMILY SSF161098 93 279 3.53E-25 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_16295 e04edacfaaafea7fccda175cf7e853c4 298 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 293 3.5E-13 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_10020 f74565a9ec41bb8646ca16cf81ad22a9 359 PRINTS PR00142 RecA protein signature 177 206 1.6E-84 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMK58_10020 f74565a9ec41bb8646ca16cf81ad22a9 359 PRINTS PR00142 RecA protein signature 222 250 1.6E-84 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMK58_10020 f74565a9ec41bb8646ca16cf81ad22a9 359 PRINTS PR00142 RecA protein signature 139 168 1.6E-84 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMK58_10020 f74565a9ec41bb8646ca16cf81ad22a9 359 PRINTS PR00142 RecA protein signature 105 134 1.6E-84 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMK58_10020 f74565a9ec41bb8646ca16cf81ad22a9 359 PRINTS PR00142 RecA protein signature 255 284 1.6E-84 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMK58_10020 f74565a9ec41bb8646ca16cf81ad22a9 359 PRINTS PR00142 RecA protein signature 309 326 1.6E-84 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMK58_10020 f74565a9ec41bb8646ca16cf81ad22a9 359 SMART SM00382 69 240 5.5E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_10020 f74565a9ec41bb8646ca16cf81ad22a9 359 Hamap MF_00268 Protein RecA [recA]. 16 341 51.993 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMK58_10020 f74565a9ec41bb8646ca16cf81ad22a9 359 SUPERFAMILY SSF52540 16 279 1.7E-66 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_10020 f74565a9ec41bb8646ca16cf81ad22a9 359 ProSitePatterns PS00321 recA signature. 225 233 - T 11-10-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 AMK58_10020 f74565a9ec41bb8646ca16cf81ad22a9 359 Gene3D G3DSA:3.40.50.300 40 279 1.5E-82 T 11-10-2018 AMK58_10020 f74565a9ec41bb8646ca16cf81ad22a9 359 Gene3D G3DSA:3.30.250.10 280 356 1.4E-25 T 11-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal AMK58_10020 f74565a9ec41bb8646ca16cf81ad22a9 359 SUPERFAMILY SSF54752 280 337 6.15E-21 T 11-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal AMK58_10020 f74565a9ec41bb8646ca16cf81ad22a9 359 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 15 335 4.0E-172 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMK58_10020 f74565a9ec41bb8646ca16cf81ad22a9 359 Pfam PF00154 recA bacterial DNA recombination protein 18 280 7.3E-146 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMK58_14160 ca486466c95b04a0ca7eb99479685746 225 SUPERFAMILY SSF46785 5 79 4.84E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_14160 ca486466c95b04a0ca7eb99479685746 225 SMART SM00345 8 66 4.4E-13 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_14160 ca486466c95b04a0ca7eb99479685746 225 SMART SM00895 76 198 2.4E-8 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_14160 ca486466c95b04a0ca7eb99479685746 225 Pfam PF00392 Bacterial regulatory proteins, gntR family 7 66 9.1E-17 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_14160 ca486466c95b04a0ca7eb99479685746 225 SUPERFAMILY SSF48008 74 201 6.8E-21 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_14160 ca486466c95b04a0ca7eb99479685746 225 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 26 40 1.8E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_14160 ca486466c95b04a0ca7eb99479685746 225 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 40 56 1.8E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_14160 ca486466c95b04a0ca7eb99479685746 225 Gene3D G3DSA:1.20.120.530 69 208 2.0E-20 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_14160 ca486466c95b04a0ca7eb99479685746 225 Gene3D G3DSA:1.10.10.10 1 67 3.4E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_14160 ca486466c95b04a0ca7eb99479685746 225 Pfam PF07729 FCD domain 78 198 9.5E-15 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_11310 bedbbfd593fec27656a1af9677a10665 543 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 26 368 7.2E-119 T 11-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 AMK58_11310 bedbbfd593fec27656a1af9677a10665 543 Pfam PF13742 OB-fold nucleic acid binding domain 25 118 1.4E-27 T 11-10-2018 IPR025824 OB-fold nucleic acid binding domain GO:0003676 AMK58_11310 bedbbfd593fec27656a1af9677a10665 543 Pfam PF02601 Exonuclease VII, large subunit 141 501 2.8E-91 T 11-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 AMK58_11310 bedbbfd593fec27656a1af9677a10665 543 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 22 504 27.136 T 11-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 AMK58_27250 9d871f31c8114510dd2181905c9ced03 236 SUPERFAMILY SSF55120 10 231 2.08E-57 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMK58_27250 9d871f31c8114510dd2181905c9ced03 236 Pfam PF00849 RNA pseudouridylate synthase 23 172 6.3E-28 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMK58_27250 9d871f31c8114510dd2181905c9ced03 236 Gene3D G3DSA:3.30.2350.10 15 229 8.5E-56 T 11-10-2018 AMK58_27250 9d871f31c8114510dd2181905c9ced03 236 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 63 77 - T 11-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMK58_11570 ce899059be98ca73c9952431279adb5b 392 SUPERFAMILY SSF56601 30 370 4.4E-68 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMK58_11570 ce899059be98ca73c9952431279adb5b 392 Pfam PF00144 Beta-lactamase 38 370 1.4E-53 T 11-10-2018 IPR001466 Beta-lactamase-related AMK58_11570 ce899059be98ca73c9952431279adb5b 392 Gene3D G3DSA:3.40.710.10 32 380 7.2E-75 T 11-10-2018 AMK58_22020 6550da9a4f39596707ddf4d6c2a54e5e 268 TIGRFAM TIGR00696 wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family 59 236 4.5E-46 T 11-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 AMK58_22020 6550da9a4f39596707ddf4d6c2a54e5e 268 Pfam PF03808 Glycosyl transferase WecB/TagA/CpsF family 63 232 1.4E-56 T 11-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 AMK58_21295 d48e63d0816cca5514220cd76cf3e7ab 410 SUPERFAMILY SSF53187 7 407 1.46E-56 T 11-10-2018 AMK58_21295 d48e63d0816cca5514220cd76cf3e7ab 410 Gene3D G3DSA:3.30.70.360 196 315 1.2E-81 T 11-10-2018 AMK58_21295 d48e63d0816cca5514220cd76cf3e7ab 410 Pfam PF07687 Peptidase dimerisation domain 192 300 9.6E-18 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain AMK58_21295 d48e63d0816cca5514220cd76cf3e7ab 410 Gene3D G3DSA:3.40.630.10 31 407 1.2E-81 T 11-10-2018 AMK58_21295 d48e63d0816cca5514220cd76cf3e7ab 410 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 90 99 - T 11-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 AMK58_21295 d48e63d0816cca5514220cd76cf3e7ab 410 Pfam PF01546 Peptidase family M20/M25/M40 91 402 4.7E-29 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 AMK58_21295 d48e63d0816cca5514220cd76cf3e7ab 410 SUPERFAMILY SSF55031 196 314 5.68E-24 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain AMK58_22605 fd1f1d81177086d325bc6075711ccfa0 222 Pfam PF07484 Phage Tail Collar Domain 6 61 2.8E-18 T 11-10-2018 IPR011083 Phage tail collar domain AMK58_22605 fd1f1d81177086d325bc6075711ccfa0 222 Gene3D G3DSA:4.10.1070.10 59 116 3.7E-14 T 11-10-2018 AMK58_22605 fd1f1d81177086d325bc6075711ccfa0 222 Gene3D G3DSA:3.90.1340.10 5 58 3.7E-14 T 11-10-2018 IPR037053 Phage tail collar domain superfamily AMK58_22605 fd1f1d81177086d325bc6075711ccfa0 222 SUPERFAMILY SSF88874 2 212 3.66E-26 T 11-10-2018 AMK58_15930 2c87b689393f79783f1f7bb9ff065668 233 Pfam PF06055 Exopolysaccharide synthesis, ExoD 33 209 2.2E-49 T 11-10-2018 IPR010331 Exopolysaccharide synthesis, ExoD AMK58_15930 2c87b689393f79783f1f7bb9ff065668 233 PIRSF PIRSF033239 21 224 6.6E-47 T 11-10-2018 IPR010331 Exopolysaccharide synthesis, ExoD AMK58_06715 b646f72578f5d4f89ed879e119c5515e 154 Gene3D G3DSA:3.90.1180.10 1 143 2.3E-57 T 11-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 AMK58_06715 b646f72578f5d4f89ed879e119c5515e 154 Pfam PF00572 Ribosomal protein L13 14 138 3.4E-52 T 11-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 AMK58_06715 b646f72578f5d4f89ed879e119c5515e 154 SUPERFAMILY SSF52161 1 140 7.46E-56 T 11-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 AMK58_06715 b646f72578f5d4f89ed879e119c5515e 154 PIRSF PIRSF002181 1 154 3.2E-50 T 11-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 AMK58_06715 b646f72578f5d4f89ed879e119c5515e 154 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 7 142 5.1E-60 T 11-10-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_06715 b646f72578f5d4f89ed879e119c5515e 154 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 142 28.257 T 11-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 AMK58_27000 64bea1f0d3c69ff3c5b0d9bc59dbe80c 613 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 130 213 1.7E-36 T 11-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 AMK58_27000 64bea1f0d3c69ff3c5b0d9bc59dbe80c 613 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 5 87 2.4E-31 T 11-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 AMK58_27000 64bea1f0d3c69ff3c5b0d9bc59dbe80c 613 Gene3D G3DSA:3.40.50.2300 1 101 2.3E-37 T 11-10-2018 AMK58_27000 64bea1f0d3c69ff3c5b0d9bc59dbe80c 613 Gene3D G3DSA:3.40.50.2300 123 227 2.5E-40 T 11-10-2018 AMK58_27000 64bea1f0d3c69ff3c5b0d9bc59dbe80c 613 SUPERFAMILY SSF52794 3 100 1.26E-33 T 11-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 AMK58_27000 64bea1f0d3c69ff3c5b0d9bc59dbe80c 613 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 6 94 5.0E-18 T 11-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AMK58_27000 64bea1f0d3c69ff3c5b0d9bc59dbe80c 613 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 131 220 2.3E-16 T 11-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AMK58_27000 64bea1f0d3c69ff3c5b0d9bc59dbe80c 613 Pfam PF02378 Phosphotransferase system, EIIC 264 527 4.7E-21 T 11-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AMK58_27000 64bea1f0d3c69ff3c5b0d9bc59dbe80c 613 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 248 582 5.2E-136 T 11-10-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 AMK58_27000 64bea1f0d3c69ff3c5b0d9bc59dbe80c 613 SUPERFAMILY SSF52794 129 224 4.71E-36 T 11-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 AMK58_19635 9e1cd3643cf1bccafa16f0a4cd592eb0 503 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 14 450 6.8E-126 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit AMK58_19635 9e1cd3643cf1bccafa16f0a4cd592eb0 503 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 24 451 8.2E-97 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 AMK58_23975 a31c18ee33c23f5cd582947e54a87e80 274 Gene3D G3DSA:1.10.3720.10 3 261 2.2E-58 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_23975 a31c18ee33c23f5cd582947e54a87e80 274 SUPERFAMILY SSF161098 5 274 2.35E-67 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_23975 a31c18ee33c23f5cd582947e54a87e80 274 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 265 5.3E-15 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_06975 f625a240964ddc2d7ec1d2f440879b52 229 SMART SM00345 21 82 6.1E-12 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_06975 f625a240964ddc2d7ec1d2f440879b52 229 SUPERFAMILY SSF46785 14 86 6.99E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_06975 f625a240964ddc2d7ec1d2f440879b52 229 SMART SM00895 92 216 2.5E-18 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_06975 f625a240964ddc2d7ec1d2f440879b52 229 Gene3D G3DSA:1.10.10.10 14 82 1.6E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_06975 f625a240964ddc2d7ec1d2f440879b52 229 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 82 8.2E-14 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_06975 f625a240964ddc2d7ec1d2f440879b52 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 56 2.8E-7 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_06975 f625a240964ddc2d7ec1d2f440879b52 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 56 72 2.8E-7 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_06975 f625a240964ddc2d7ec1d2f440879b52 229 SUPERFAMILY SSF48008 89 223 1.54E-25 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_06975 f625a240964ddc2d7ec1d2f440879b52 229 Gene3D G3DSA:1.20.120.530 86 226 1.5E-28 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_06975 f625a240964ddc2d7ec1d2f440879b52 229 Pfam PF07729 FCD domain 92 213 4.1E-27 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_02520 b6934e2a472dce4084a220ad6ac8cc70 293 SUPERFAMILY SSF51621 6 233 1.34E-67 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMK58_02520 b6934e2a472dce4084a220ad6ac8cc70 293 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 9 223 1.5E-47 T 11-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 AMK58_02520 b6934e2a472dce4084a220ad6ac8cc70 293 Gene3D G3DSA:3.20.20.60 1 292 1.7E-96 T 11-10-2018 AMK58_02520 b6934e2a472dce4084a220ad6ac8cc70 293 PIRSF PIRSF015582 1 292 5.4E-84 T 11-10-2018 IPR011206 Citrate lyase beta subunit-like AMK58_05690 7ec3aba76fcc64ed80f58197a27adabe 133 Gene3D G3DSA:2.40.50.90 1 127 2.3E-18 T 11-10-2018 IPR035437 SNase-like, OB-fold superfamily AMK58_05690 7ec3aba76fcc64ed80f58197a27adabe 133 SUPERFAMILY SSF50199 2 117 2.75E-23 T 11-10-2018 AMK58_05690 7ec3aba76fcc64ed80f58197a27adabe 133 SMART SM00318 2 115 1.4E-4 T 11-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 AMK58_05690 7ec3aba76fcc64ed80f58197a27adabe 133 Pfam PF00565 Staphylococcal nuclease homologue 13 114 3.9E-11 T 11-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 AMK58_25285 d7f752293557140d1044d8bfac6b59a0 166 Pfam PF03748 Flagellar basal body-associated protein FliL 72 166 1.0E-13 T 11-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 AMK58_16645 c7ada6e56cc8a44ef032f98c48c76d53 224 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 15 111 6.4E-33 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMK58_16645 c7ada6e56cc8a44ef032f98c48c76d53 224 SUPERFAMILY SSF161098 14 202 5.76E-45 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_16645 c7ada6e56cc8a44ef032f98c48c76d53 224 Gene3D G3DSA:1.10.3720.10 3 216 4.9E-54 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_16645 c7ada6e56cc8a44ef032f98c48c76d53 224 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 35 209 5.2E-19 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_18605 f51bc71968ad6f3c4e55a3c7f3ee71ad 439 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 19 432 4.8E-87 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 AMK58_18605 f51bc71968ad6f3c4e55a3c7f3ee71ad 439 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 11 426 5.4E-74 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit AMK58_18030 0c2e5c14bdbcf0c83dfc89ba4acfeee2 597 Gene3D G3DSA:3.40.50.300 341 593 9.7E-93 T 11-10-2018 AMK58_18030 0c2e5c14bdbcf0c83dfc89ba4acfeee2 597 SUPERFAMILY SSF52540 341 586 1.81E-91 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_18030 0c2e5c14bdbcf0c83dfc89ba4acfeee2 597 SUPERFAMILY SSF90123 21 338 4.45E-69 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMK58_18030 0c2e5c14bdbcf0c83dfc89ba4acfeee2 597 SMART SM00382 375 561 1.1E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_18030 0c2e5c14bdbcf0c83dfc89ba4acfeee2 597 Gene3D G3DSA:1.20.1560.10 8 336 2.0E-73 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMK58_18030 0c2e5c14bdbcf0c83dfc89ba4acfeee2 597 Pfam PF00664 ABC transporter transmembrane region 35 291 3.6E-42 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMK58_18030 0c2e5c14bdbcf0c83dfc89ba4acfeee2 597 ProSitePatterns PS00211 ABC transporters family signature. 487 501 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_18030 0c2e5c14bdbcf0c83dfc89ba4acfeee2 597 Pfam PF00005 ABC transporter 366 515 4.0E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_02775 92a2994dde513987b704226f8107e92d 435 PIRSF PIRSF006060 2 425 1.9E-44 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 AMK58_02775 92a2994dde513987b704226f8107e92d 435 Pfam PF13520 Amino acid permease 13 383 7.0E-30 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 AMK58_02775 92a2994dde513987b704226f8107e92d 435 Gene3D G3DSA:1.20.1740.10 9 427 3.7E-56 T 11-10-2018 AMK58_10715 8eebb753f6ff9fb0e080b219682cf697 1057 Hamap MF_00970 Ribonuclease E [rne]. 2 1050 32.779 T 11-10-2018 IPR028878 Ribonuclease E GO:0006396|GO:0008995 AMK58_10715 8eebb753f6ff9fb0e080b219682cf697 1057 Gene3D G3DSA:2.40.50.140 36 123 7.1E-24 T 11-10-2018 AMK58_10715 8eebb753f6ff9fb0e080b219682cf697 1057 Gene3D G3DSA:2.40.50.140 159 230 4.5E-13 T 11-10-2018 AMK58_10715 8eebb753f6ff9fb0e080b219682cf697 1057 Gene3D G3DSA:3.40.1260.20 513 620 9.6E-32 T 11-10-2018 AMK58_10715 8eebb753f6ff9fb0e080b219682cf697 1057 Pfam PF00575 S1 RNA binding domain 39 78 1.4E-4 T 11-10-2018 IPR003029 S1 domain GO:0003676 AMK58_10715 8eebb753f6ff9fb0e080b219682cf697 1057 SUPERFAMILY SSF50249 40 236 3.65E-15 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_10715 8eebb753f6ff9fb0e080b219682cf697 1057 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 14 537 1.2E-161 T 11-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 AMK58_10715 8eebb753f6ff9fb0e080b219682cf697 1057 Pfam PF10150 Ribonuclease E/G family 232 503 3.3E-96 T 11-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 AMK58_12170 1b09be82471035111eaed2d4fb8d9010 322 Gene3D G3DSA:3.40.50.12230 4 313 2.2E-106 T 11-10-2018 AMK58_12170 1b09be82471035111eaed2d4fb8d9010 322 SUPERFAMILY SSF50486 207 313 6.28E-27 T 11-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 AMK58_12170 1b09be82471035111eaed2d4fb8d9010 322 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 5 309 1.9E-87 T 11-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 AMK58_12170 1b09be82471035111eaed2d4fb8d9010 322 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 135 158 - T 11-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMK58_12170 1b09be82471035111eaed2d4fb8d9010 322 SUPERFAMILY SSF53328 1 206 5.36E-69 T 11-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMK58_12170 1b09be82471035111eaed2d4fb8d9010 322 Pfam PF00551 Formyl transferase 5 183 3.0E-48 T 11-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMK58_12170 1b09be82471035111eaed2d4fb8d9010 322 Pfam PF02911 Formyl transferase, C-terminal domain 206 305 6.5E-22 T 11-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMK58_12170 1b09be82471035111eaed2d4fb8d9010 322 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 4 308 36.094 T 11-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 AMK58_04710 6e02b8c07103f42f3eeb1fe5df16b269 69 TIGRFAM TIGR02934 nifT_nitrog: probable nitrogen fixation protein FixT 1 65 2.8E-32 T 11-10-2018 IPR009727 NifT/FixU GO:0009399 AMK58_04710 6e02b8c07103f42f3eeb1fe5df16b269 69 SUPERFAMILY SSF159203 1 65 2.22E-25 T 11-10-2018 IPR024044 NifT/FixU barrel-like domain superfamily AMK58_04710 6e02b8c07103f42f3eeb1fe5df16b269 69 Gene3D G3DSA:2.40.50.240 1 66 6.2E-31 T 11-10-2018 IPR024044 NifT/FixU barrel-like domain superfamily AMK58_04710 6e02b8c07103f42f3eeb1fe5df16b269 69 Pfam PF06988 NifT/FixU protein 1 63 1.2E-28 T 11-10-2018 IPR009727 NifT/FixU GO:0009399 AMK58_20425 5ac3c5f29c2b43495d6b89dacaee9105 150 SMART SM00226 8 144 3.1E-15 T 11-10-2018 IPR023485 Phosphotyrosine protein phosphatase I AMK58_20425 5ac3c5f29c2b43495d6b89dacaee9105 150 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 10 111 2.8E-17 T 11-10-2018 IPR023485 Phosphotyrosine protein phosphatase I AMK58_20425 5ac3c5f29c2b43495d6b89dacaee9105 150 Gene3D G3DSA:3.40.50.2300 7 143 1.5E-31 T 11-10-2018 AMK58_20425 5ac3c5f29c2b43495d6b89dacaee9105 150 SUPERFAMILY SSF52788 8 142 7.2E-34 T 11-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily AMK58_07145 10161f56c234f6ca4d56c00939471762 283 Gene3D G3DSA:3.90.550.10 2 230 4.1E-19 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_07145 10161f56c234f6ca4d56c00939471762 283 Pfam PF00535 Glycosyl transferase family 2 5 113 1.4E-11 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMK58_07145 10161f56c234f6ca4d56c00939471762 283 SUPERFAMILY SSF53448 2 112 1.03E-17 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_04480 84f51c23bfd4487523d193d01a29ff74 324 Pfam PF02685 Glucokinase 14 322 1.6E-108 T 11-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 AMK58_04480 84f51c23bfd4487523d193d01a29ff74 324 SUPERFAMILY SSF53067 12 321 6.72E-58 T 11-10-2018 AMK58_04480 84f51c23bfd4487523d193d01a29ff74 324 Gene3D G3DSA:3.40.367.20 108 307 1.2E-104 T 11-10-2018 AMK58_04480 84f51c23bfd4487523d193d01a29ff74 324 Hamap MF_00524 Glucokinase [glk]. 12 324 34.192 T 11-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 AMK58_04480 84f51c23bfd4487523d193d01a29ff74 324 TIGRFAM TIGR00749 glk: glucokinase 14 316 3.8E-92 T 11-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 AMK58_04480 84f51c23bfd4487523d193d01a29ff74 324 Gene3D G3DSA:3.30.420.40 14 318 1.2E-104 T 11-10-2018 AMK58_10605 c7de8469568525ac6606baba83c1b6f0 390 Pfam PF06187 Protein of unknown function (DUF993) 5 387 2.1E-189 T 11-10-2018 IPR009334 Protein of unknown function DUF993 AMK58_10605 c7de8469568525ac6606baba83c1b6f0 390 Gene3D G3DSA:3.20.20.500 1 383 1.1E-177 T 11-10-2018 AMK58_10605 c7de8469568525ac6606baba83c1b6f0 390 SUPERFAMILY SSF51569 58 333 3.87E-11 T 11-10-2018 AMK58_25375 e2bbdee451619e2bc52b64e02ffdc376 295 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 205 222 - T 11-10-2018 IPR000540 Flagellar motor protein MotA, conserved site AMK58_25375 e2bbdee451619e2bc52b64e02ffdc376 295 Pfam PF01618 MotA/TolQ/ExbB proton channel family 138 224 4.3E-10 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel AMK58_25375 e2bbdee451619e2bc52b64e02ffdc376 295 TIGRFAM TIGR03818 MotA1: flagellar motor stator protein MotA 1 279 4.4E-104 T 11-10-2018 IPR022522 Flagellar motor stator, MotA AMK58_07845 a4b9f95f135b2cda59628a4e108a2d3c 447 SUPERFAMILY SSF55931 111 443 2.16E-106 T 11-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 AMK58_07845 a4b9f95f135b2cda59628a4e108a2d3c 447 Gene3D G3DSA:3.10.20.70 3 111 1.9E-8 T 11-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMK58_07845 a4b9f95f135b2cda59628a4e108a2d3c 447 SUPERFAMILY SSF54368 5 109 3.79E-21 T 11-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMK58_07845 a4b9f95f135b2cda59628a4e108a2d3c 447 Pfam PF00120 Glutamine synthetase, catalytic domain 112 442 4.5E-104 T 11-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMK58_07845 a4b9f95f135b2cda59628a4e108a2d3c 447 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 246 261 - T 11-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 AMK58_07845 a4b9f95f135b2cda59628a4e108a2d3c 447 SMART SM01230 110 366 1.9E-110 T 11-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMK58_07845 a4b9f95f135b2cda59628a4e108a2d3c 447 Gene3D G3DSA:3.30.590.10 113 445 1.3E-102 T 11-10-2018 AMK58_27280 03f2113d256e9d8b63bd1404a3ecc6a2 434 Pfam PF00202 Aminotransferase class-III 23 429 8.4E-103 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMK58_27280 03f2113d256e9d8b63bd1404a3ecc6a2 434 Gene3D G3DSA:3.40.640.10 60 334 1.9E-145 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_27280 03f2113d256e9d8b63bd1404a3ecc6a2 434 Gene3D G3DSA:3.90.1150.10 11 424 1.9E-145 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_27280 03f2113d256e9d8b63bd1404a3ecc6a2 434 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 245 282 - T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMK58_27280 03f2113d256e9d8b63bd1404a3ecc6a2 434 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 12 430 4.1E-161 T 11-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 AMK58_27280 03f2113d256e9d8b63bd1404a3ecc6a2 434 SUPERFAMILY SSF53383 2 432 7.54E-117 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_16050 3c8ffcf958b8ba9562561e4f019e4120 465 Pfam PF00072 Response regulator receiver domain 5 116 5.6E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_16050 3c8ffcf958b8ba9562561e4f019e4120 465 Pfam PF00072 Response regulator receiver domain 158 269 1.3E-17 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_16050 3c8ffcf958b8ba9562561e4f019e4120 465 SMART SM00448 3 116 1.8E-45 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_16050 3c8ffcf958b8ba9562561e4f019e4120 465 SMART SM00448 156 269 3.0E-21 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_16050 3c8ffcf958b8ba9562561e4f019e4120 465 SUPERFAMILY SSF55073 298 454 1.57E-51 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_16050 3c8ffcf958b8ba9562561e4f019e4120 465 Gene3D G3DSA:3.30.70.270 290 457 6.1E-60 T 11-10-2018 AMK58_16050 3c8ffcf958b8ba9562561e4f019e4120 465 Pfam PF00990 Diguanylate cyclase, GGDEF domain 293 451 4.6E-49 T 11-10-2018 IPR000160 GGDEF domain AMK58_16050 3c8ffcf958b8ba9562561e4f019e4120 465 Gene3D G3DSA:3.40.50.12740 1 289 1.4E-97 T 11-10-2018 AMK58_16050 3c8ffcf958b8ba9562561e4f019e4120 465 SMART SM00267 282 456 4.5E-66 T 11-10-2018 IPR000160 GGDEF domain AMK58_16050 3c8ffcf958b8ba9562561e4f019e4120 465 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 292 454 5.5E-53 T 11-10-2018 IPR000160 GGDEF domain AMK58_16050 3c8ffcf958b8ba9562561e4f019e4120 465 SUPERFAMILY SSF52172 151 288 4.41E-28 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_16050 3c8ffcf958b8ba9562561e4f019e4120 465 SUPERFAMILY SSF52172 2 132 5.12E-43 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_00510 70999ca735dcd42e6eb57266b8b294f2 207 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 39 182 1.3E-66 T 11-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 AMK58_00510 70999ca735dcd42e6eb57266b8b294f2 207 SUPERFAMILY SSF54211 10 94 6.96E-33 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMK58_00510 70999ca735dcd42e6eb57266b8b294f2 207 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 10 203 43.678 T 11-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 AMK58_00510 70999ca735dcd42e6eb57266b8b294f2 207 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 69 82 - T 11-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 AMK58_00510 70999ca735dcd42e6eb57266b8b294f2 207 SUPERFAMILY SSF54211 96 186 5.31E-38 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMK58_00510 70999ca735dcd42e6eb57266b8b294f2 207 Gene3D G3DSA:3.30.230.40 98 205 4.0E-42 T 11-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 AMK58_00510 70999ca735dcd42e6eb57266b8b294f2 207 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 164 176 - T 11-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 AMK58_00510 70999ca735dcd42e6eb57266b8b294f2 207 Gene3D G3DSA:3.30.230.40 1 97 8.8E-37 T 11-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 AMK58_27815 5109da62c9f913dd591da2050635ac51 98 Pfam PF13428 Tetratricopeptide repeat 1 30 5.7E-5 T 11-10-2018 AMK58_27815 5109da62c9f913dd591da2050635ac51 98 Gene3D G3DSA:1.25.40.10 1 41 1.3E-5 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_10760 9d8b31a7c4561f1c9881c6936deac832 308 Gene3D G3DSA:1.20.120.1780 192 308 3.5E-13 T 11-10-2018 AMK58_10760 9d8b31a7c4561f1c9881c6936deac832 308 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 87 109 - T 11-10-2018 IPR030470 UbiA prenyltransferase conserved site AMK58_10760 9d8b31a7c4561f1c9881c6936deac832 308 Gene3D G3DSA:1.10.357.140 44 191 1.1E-47 T 11-10-2018 AMK58_10760 9d8b31a7c4561f1c9881c6936deac832 308 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 30 306 6.9E-114 T 11-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 AMK58_10760 9d8b31a7c4561f1c9881c6936deac832 308 Pfam PF01040 UbiA prenyltransferase family 47 291 1.7E-63 T 11-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 AMK58_10760 9d8b31a7c4561f1c9881c6936deac832 308 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 24 308 28.994 T 11-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 AMK58_03185 3ff75ced2410763fdfe7096d105c172c 389 SUPERFAMILY SSF53822 32 380 1.2E-73 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMK58_03185 3ff75ced2410763fdfe7096d105c172c 389 Pfam PF13458 Periplasmic binding protein 33 377 8.4E-66 T 11-10-2018 IPR028081 Leucine-binding protein domain AMK58_03185 3ff75ced2410763fdfe7096d105c172c 389 Gene3D G3DSA:3.40.50.2300 42 347 2.4E-64 T 11-10-2018 AMK58_03185 3ff75ced2410763fdfe7096d105c172c 389 Gene3D G3DSA:3.40.50.2300 152 289 2.4E-64 T 11-10-2018 AMK58_03185 3ff75ced2410763fdfe7096d105c172c 389 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 56 72 2.6E-6 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMK58_03185 3ff75ced2410763fdfe7096d105c172c 389 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 34 50 2.6E-6 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMK58_03185 3ff75ced2410763fdfe7096d105c172c 389 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 75 93 2.6E-6 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMK58_03185 3ff75ced2410763fdfe7096d105c172c 389 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 273 291 2.6E-6 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMK58_16725 38ed0d002d02de7339bd0b0a078ed968 295 Gene3D G3DSA:3.20.20.60 1 287 1.2E-98 T 11-10-2018 AMK58_16725 38ed0d002d02de7339bd0b0a078ed968 295 ProSitePatterns PS00161 Isocitrate lyase signature. 113 118 - T 11-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 AMK58_16725 38ed0d002d02de7339bd0b0a078ed968 295 Pfam PF13714 Phosphoenolpyruvate phosphomutase 3 245 6.5E-50 T 11-10-2018 AMK58_16725 38ed0d002d02de7339bd0b0a078ed968 295 SUPERFAMILY SSF51621 3 286 4.93E-89 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMK58_25745 629aceec7df3c16b21aee00129f5eb7b 332 SUPERFAMILY SSF53659 20 305 1.27E-59 T 11-10-2018 AMK58_25745 629aceec7df3c16b21aee00129f5eb7b 332 Pfam PF01515 Phosphate acetyl/butaryl transferase 87 301 3.3E-35 T 11-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AMK58_25745 629aceec7df3c16b21aee00129f5eb7b 332 Gene3D G3DSA:3.40.718.10 10 305 7.9E-85 T 11-10-2018 AMK58_25745 629aceec7df3c16b21aee00129f5eb7b 332 PIRSF PIRSF000428 11 309 4.5E-72 T 11-10-2018 IPR012147 Phosphate acetyl/butyryltransferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AMK58_12590 6ade5c0e9a2f7bbb54f500bfcb1dcc7a 370 SUPERFAMILY SSF51905 4 366 1.23E-42 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_12590 6ade5c0e9a2f7bbb54f500bfcb1dcc7a 370 Gene3D G3DSA:3.50.50.60 5 355 6.1E-84 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_12590 6ade5c0e9a2f7bbb54f500bfcb1dcc7a 370 SUPERFAMILY SSF54373 215 315 3.92E-8 T 11-10-2018 AMK58_12590 6ade5c0e9a2f7bbb54f500bfcb1dcc7a 370 Pfam PF01266 FAD dependent oxidoreductase 5 352 1.7E-47 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMK58_12590 6ade5c0e9a2f7bbb54f500bfcb1dcc7a 370 Gene3D G3DSA:3.30.9.10 59 316 6.1E-84 T 11-10-2018 AMK58_05675 20cc9b36d53de9783fc946b796e8c5d0 260 SUPERFAMILY SSF141868 22 244 4.58E-59 T 11-10-2018 IPR035919 EAL domain superfamily AMK58_05675 20cc9b36d53de9783fc946b796e8c5d0 260 Gene3D G3DSA:3.20.20.450 14 255 1.3E-67 T 11-10-2018 IPR035919 EAL domain superfamily AMK58_05675 20cc9b36d53de9783fc946b796e8c5d0 260 Pfam PF00563 EAL domain 23 243 1.6E-50 T 11-10-2018 IPR001633 EAL domain AMK58_05675 20cc9b36d53de9783fc946b796e8c5d0 260 SMART SM00052 7 248 5.2E-34 T 11-10-2018 IPR001633 EAL domain AMK58_00215 ef56a7586bb32c89f35da112a0affba1 879 SUPERFAMILY SSF52540 348 864 2.26E-29 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_00215 ef56a7586bb32c89f35da112a0affba1 879 SUPERFAMILY SSF90123 10 328 2.49E-45 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMK58_00215 ef56a7586bb32c89f35da112a0affba1 879 Pfam PF00664 ABC transporter transmembrane region 67 290 4.2E-20 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMK58_00215 ef56a7586bb32c89f35da112a0affba1 879 Gene3D G3DSA:3.40.50.300 681 879 7.1E-32 T 11-10-2018 AMK58_00215 ef56a7586bb32c89f35da112a0affba1 879 Gene3D G3DSA:3.40.50.300 343 503 9.6E-16 T 11-10-2018 AMK58_00215 ef56a7586bb32c89f35da112a0affba1 879 Gene3D G3DSA:1.20.1560.10 3 324 8.8E-41 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMK58_00215 ef56a7586bb32c89f35da112a0affba1 879 Pfam PF00005 ABC transporter 728 809 6.5E-6 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_05925 8325197d4bc18bb619d7327c2301a31a 183 Gene3D G3DSA:3.90.79.10 2 147 9.6E-7 T 11-10-2018 AMK58_05925 8325197d4bc18bb619d7327c2301a31a 183 SUPERFAMILY SSF55811 8 141 4.48E-8 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMK58_17105 c53366f305f9c3f253710571958204b4 320 SUPERFAMILY SSF103481 61 163 1.2E-11 T 11-10-2018 AMK58_17105 c53366f305f9c3f253710571958204b4 320 SUPERFAMILY SSF103481 203 305 1.57E-14 T 11-10-2018 AMK58_17105 c53366f305f9c3f253710571958204b4 320 Pfam PF00892 EamA-like transporter family 26 159 5.4E-13 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_17105 c53366f305f9c3f253710571958204b4 320 Pfam PF00892 EamA-like transporter family 169 299 5.6E-12 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_03590 c0d892281600b1873fa8581d8e751ffe 282 Pfam PF15916 Domain of unknown function (DUF4743) 3 114 1.6E-22 T 11-10-2018 IPR031804 Domain of unknown function DUF4743 AMK58_03590 c0d892281600b1873fa8581d8e751ffe 282 Gene3D G3DSA:3.30.750.160 20 202 8.0E-93 T 11-10-2018 AMK58_03590 c0d892281600b1873fa8581d8e751ffe 282 SUPERFAMILY SSF55811 88 262 5.28E-17 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMK58_03590 c0d892281600b1873fa8581d8e751ffe 282 Gene3D G3DSA:3.90.79.10 114 277 8.0E-93 T 11-10-2018 AMK58_07540 c4e1ba68e1bc3eb9c562048351ffc6e6 307 Gene3D G3DSA:3.40.50.300 22 213 4.0E-27 T 11-10-2018 AMK58_07540 c4e1ba68e1bc3eb9c562048351ffc6e6 307 SUPERFAMILY SSF52540 39 285 2.89E-35 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_07540 c4e1ba68e1bc3eb9c562048351ffc6e6 307 Pfam PF07728 AAA domain (dynein-related subfamily) 41 195 3.3E-10 T 11-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 AMK58_16135 51a09d594b22743cfa9370ea683b49c2 409 Gene3D G3DSA:3.40.50.2300 155 372 4.7E-101 T 11-10-2018 AMK58_16135 51a09d594b22743cfa9370ea683b49c2 409 SUPERFAMILY SSF53822 36 407 2.19E-84 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMK58_16135 51a09d594b22743cfa9370ea683b49c2 409 Pfam PF13458 Periplasmic binding protein 36 372 2.0E-82 T 11-10-2018 IPR028081 Leucine-binding protein domain AMK58_16135 51a09d594b22743cfa9370ea683b49c2 409 Gene3D G3DSA:3.40.50.2300 59 365 4.7E-101 T 11-10-2018 AMK58_21010 f914e25f47a502a3c16816386994446d 119 SUPERFAMILY SSF52980 3 110 5.25E-24 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AMK58_21010 f914e25f47a502a3c16816386994446d 119 Gene3D G3DSA:3.40.960.10 14 111 7.2E-35 T 11-10-2018 AMK58_21010 f914e25f47a502a3c16816386994446d 119 Pfam PF04480 Protein of unknown function (DUF559) 5 110 2.8E-39 T 11-10-2018 IPR007569 Protein of unknown function DUF559 AMK58_28185 115b2c906a90869ec16a25b21bac196a 409 SUPERFAMILY SSF55909 4 407 4.1E-132 T 11-10-2018 AMK58_28185 115b2c906a90869ec16a25b21bac196a 409 PRINTS PR01466 Bacterial arginine deiminase signature 344 361 4.7E-51 T 11-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 AMK58_28185 115b2c906a90869ec16a25b21bac196a 409 PRINTS PR01466 Bacterial arginine deiminase signature 150 168 4.7E-51 T 11-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 AMK58_28185 115b2c906a90869ec16a25b21bac196a 409 PRINTS PR01466 Bacterial arginine deiminase signature 2 22 4.7E-51 T 11-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 AMK58_28185 115b2c906a90869ec16a25b21bac196a 409 PRINTS PR01466 Bacterial arginine deiminase signature 387 405 4.7E-51 T 11-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 AMK58_28185 115b2c906a90869ec16a25b21bac196a 409 PRINTS PR01466 Bacterial arginine deiminase signature 364 378 4.7E-51 T 11-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 AMK58_28185 115b2c906a90869ec16a25b21bac196a 409 PRINTS PR01466 Bacterial arginine deiminase signature 178 193 4.7E-51 T 11-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 AMK58_28185 115b2c906a90869ec16a25b21bac196a 409 Pfam PF02274 Amidinotransferase 18 405 1.4E-102 T 11-10-2018 AMK58_28185 115b2c906a90869ec16a25b21bac196a 409 Gene3D G3DSA:3.75.10.10 6 405 2.0E-149 T 11-10-2018 AMK58_28185 115b2c906a90869ec16a25b21bac196a 409 PIRSF PIRSF006356 1 408 2.7E-135 T 11-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 AMK58_28185 115b2c906a90869ec16a25b21bac196a 409 Hamap MF_00242 Arginine deiminase [arcA]. 1 408 47.199 T 11-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 AMK58_28185 115b2c906a90869ec16a25b21bac196a 409 Gene3D G3DSA:1.10.3930.10 68 149 2.0E-149 T 11-10-2018 AMK58_19750 7a7c1c7c123a9ef405520483e095842f 260 Pfam PF02525 Flavodoxin-like fold 1 214 5.7E-57 T 11-10-2018 IPR003680 Flavodoxin-like fold AMK58_19750 7a7c1c7c123a9ef405520483e095842f 260 Gene3D G3DSA:3.40.50.360 1 259 1.1E-99 T 11-10-2018 IPR029039 Flavoprotein-like superfamily AMK58_19750 7a7c1c7c123a9ef405520483e095842f 260 SUPERFAMILY SSF52218 1 242 2.62E-72 T 11-10-2018 IPR029039 Flavoprotein-like superfamily AMK58_13145 b0adddab2dc01777c73d9f8bb19de46d 564 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 340 348 - T 11-10-2018 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMK58_13145 b0adddab2dc01777c73d9f8bb19de46d 564 Pfam PF06628 Catalase-related immune-responsive 426 486 4.7E-17 T 11-10-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMK58_13145 b0adddab2dc01777c73d9f8bb19de46d 564 PRINTS PR00067 Catalase signature 90 108 1.2E-64 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMK58_13145 b0adddab2dc01777c73d9f8bb19de46d 564 PRINTS PR00067 Catalase signature 111 128 1.2E-64 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMK58_13145 b0adddab2dc01777c73d9f8bb19de46d 564 PRINTS PR00067 Catalase signature 295 322 1.2E-64 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMK58_13145 b0adddab2dc01777c73d9f8bb19de46d 564 PRINTS PR00067 Catalase signature 130 148 1.2E-64 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMK58_13145 b0adddab2dc01777c73d9f8bb19de46d 564 PRINTS PR00067 Catalase signature 327 353 1.2E-64 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMK58_13145 b0adddab2dc01777c73d9f8bb19de46d 564 PRINTS PR00067 Catalase signature 22 45 1.2E-64 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMK58_13145 b0adddab2dc01777c73d9f8bb19de46d 564 SMART SM01060 9 403 3.6E-237 T 11-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMK58_13145 b0adddab2dc01777c73d9f8bb19de46d 564 PIRSF PIRSF038928 1 493 5.8E-171 T 11-10-2018 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMK58_13145 b0adddab2dc01777c73d9f8bb19de46d 564 Gene3D G3DSA:2.40.180.10 5 508 5.0E-203 T 11-10-2018 IPR037060 Catalase core domain superfamily GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 AMK58_13145 b0adddab2dc01777c73d9f8bb19de46d 564 Pfam PF00199 Catalase 9 397 4.4E-165 T 11-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMK58_13145 b0adddab2dc01777c73d9f8bb19de46d 564 SUPERFAMILY SSF56634 2 494 1.57E-185 T 11-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMK58_05245 c2803b00b3cd7cef991d387d9f600155 320 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 20 307 8.9E-36 T 11-10-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD AMK58_23310 934bed21bc80ace5848f2c098a78a208 444 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 8 22 - T 11-10-2018 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site AMK58_23310 934bed21bc80ace5848f2c098a78a208 444 SUPERFAMILY SSF51445 3 436 9.5E-157 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily AMK58_23310 934bed21bc80ace5848f2c098a78a208 444 TIGRFAM TIGR03356 BGL: beta-galactosidase 4 432 1.5E-168 T 11-10-2018 IPR017736 Glycoside hydrolase, family 1, beta-glucosidase GO:0008422|GO:0030245 KEGG: 00460+3.2.1.21|KEGG: 00500+3.2.1.21|KEGG: 00940+3.2.1.21|MetaCyc: PWY-3121|MetaCyc: PWY-5176|MetaCyc: PWY-6002|MetaCyc: PWY-6788|MetaCyc: PWY-7091|MetaCyc: PWY-7092|MetaCyc: PWY-7913 AMK58_23310 934bed21bc80ace5848f2c098a78a208 444 Pfam PF00232 Glycosyl hydrolase family 1 4 436 1.5E-145 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMK58_23310 934bed21bc80ace5848f2c098a78a208 444 PRINTS PR00131 Glycosyl hydrolase family 1 signature 410 422 3.0E-19 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMK58_23310 934bed21bc80ace5848f2c098a78a208 444 PRINTS PR00131 Glycosyl hydrolase family 1 signature 386 403 3.0E-19 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMK58_23310 934bed21bc80ace5848f2c098a78a208 444 PRINTS PR00131 Glycosyl hydrolase family 1 signature 365 376 3.0E-19 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMK58_23310 934bed21bc80ace5848f2c098a78a208 444 PRINTS PR00131 Glycosyl hydrolase family 1 signature 280 294 3.0E-19 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMK58_23310 934bed21bc80ace5848f2c098a78a208 444 PRINTS PR00131 Glycosyl hydrolase family 1 signature 342 350 3.0E-19 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMK58_23310 934bed21bc80ace5848f2c098a78a208 444 Gene3D G3DSA:3.20.20.80 2 439 3.0E-159 T 11-10-2018 AMK58_06065 1903b11b46d41bfa156c038171d2379e 516 Gene3D G3DSA:3.40.630.150 203 514 1.4E-112 T 11-10-2018 AMK58_06065 1903b11b46d41bfa156c038171d2379e 516 Pfam PF05292 Malonyl-CoA decarboxylase C-terminal domain 204 485 3.1E-115 T 11-10-2018 IPR007956 Malonyl-CoA decarboxylase, C-terminal GO:0006633|GO:0050080 KEGG: 00410+4.1.1.9|KEGG: 00640+4.1.1.9|Reactome: R-HSA-390247|Reactome: R-HSA-9033241 AMK58_06065 1903b11b46d41bfa156c038171d2379e 516 Gene3D G3DSA:1.20.140.90 56 200 2.6E-39 T 11-10-2018 IPR038351 Malonyl-CoA decarboxylase, N-terminal domain superfamily KEGG: 00410+4.1.1.9|KEGG: 00640+4.1.1.9|Reactome: R-HSA-390247|Reactome: R-HSA-9033241 AMK58_06065 1903b11b46d41bfa156c038171d2379e 516 Pfam PF17408 Malonyl-CoA decarboxylase N-terminal domain 114 201 2.6E-26 T 11-10-2018 IPR035372 Malonyl-CoA decarboxylase, N-terminal KEGG: 00410+4.1.1.9|KEGG: 00640+4.1.1.9|Reactome: R-HSA-390247|Reactome: R-HSA-9033241 AMK58_28120 ed35998342140b2279aad116194887f6 309 Gene3D G3DSA:3.40.50.300 22 212 5.7E-18 T 11-10-2018 AMK58_28120 ed35998342140b2279aad116194887f6 309 Pfam PF05621 Bacterial TniB protein 25 278 2.0E-86 T 11-10-2018 IPR008868 Bacterial TniB AMK58_28120 ed35998342140b2279aad116194887f6 309 SMART SM00382 58 206 2.1E-4 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_28120 ed35998342140b2279aad116194887f6 309 SUPERFAMILY SSF52540 42 285 3.28E-16 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_23005 1005ba4e6f0fe63d61a7548d26a57228 395 Pfam PF04230 Polysaccharide pyruvyl transferase 36 321 2.8E-22 T 11-10-2018 IPR007345 Polysaccharide pyruvyl transferase AMK58_12215 83439e58301ae08776f86ebb947f0194 131 Pfam PF01245 Ribosomal protein L19 3 117 1.3E-48 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_12215 83439e58301ae08776f86ebb947f0194 131 ProSitePatterns PS01015 Ribosomal protein L19 signature. 90 105 - T 11-10-2018 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_12215 83439e58301ae08776f86ebb947f0194 131 SUPERFAMILY SSF50104 1 120 4.31E-46 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily AMK58_12215 83439e58301ae08776f86ebb947f0194 131 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 1 117 3.4E-49 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_12215 83439e58301ae08776f86ebb947f0194 131 PIRSF PIRSF002191 1 131 2.0E-55 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_12215 83439e58301ae08776f86ebb947f0194 131 Gene3D G3DSA:2.30.30.790 2 119 5.9E-17 T 11-10-2018 IPR038657 Ribosomal protein L19 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_12215 83439e58301ae08776f86ebb947f0194 131 PRINTS PR00061 Ribosomal protein L19 signature 38 67 6.1E-37 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_12215 83439e58301ae08776f86ebb947f0194 131 PRINTS PR00061 Ribosomal protein L19 signature 8 37 6.1E-37 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_12215 83439e58301ae08776f86ebb947f0194 131 PRINTS PR00061 Ribosomal protein L19 signature 92 117 6.1E-37 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_12215 83439e58301ae08776f86ebb947f0194 131 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 1 118 31.511 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_06505 0152568d13b1b53120a58667c099e2a2 244 SUPERFAMILY SSF144091 2 205 5.89E-40 T 11-10-2018 AMK58_06505 0152568d13b1b53120a58667c099e2a2 244 Pfam PF01694 Rhomboid family 52 204 2.1E-40 T 11-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 AMK58_06505 0152568d13b1b53120a58667c099e2a2 244 Gene3D G3DSA:1.20.1540.10 1 210 2.2E-30 T 11-10-2018 IPR035952 Rhomboid-like superfamily AMK58_05385 14a25956d8d4f51bef80600cf9188c4d 464 Pfam PF02233 NAD(P) transhydrogenase beta subunit 7 461 1.4E-199 T 11-10-2018 IPR034300 NADP transhydrogenase beta-like domain KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 AMK58_05385 14a25956d8d4f51bef80600cf9188c4d 464 PIRSF PIRSF000204 1 464 5.4E-218 T 11-10-2018 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 AMK58_05385 14a25956d8d4f51bef80600cf9188c4d 464 Gene3D G3DSA:3.40.50.1220 287 464 1.4E-84 T 11-10-2018 AMK58_05385 14a25956d8d4f51bef80600cf9188c4d 464 SUPERFAMILY SSF52467 290 463 3.93E-76 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AMK58_08010 a4d4a9676771e81cfa80c95ee292ddb0 544 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 376 540 1.8E-55 T 11-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 AMK58_08010 a4d4a9676771e81cfa80c95ee292ddb0 544 SUPERFAMILY SSF117457 364 539 6.02E-62 T 11-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 AMK58_08010 a4d4a9676771e81cfa80c95ee292ddb0 544 Pfam PF05683 Fumarase C-terminus 335 540 6.9E-93 T 11-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 AMK58_08010 a4d4a9676771e81cfa80c95ee292ddb0 544 Pfam PF05681 Fumarate hydratase (Fumerase) 54 328 6.0E-83 T 11-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 AMK58_08010 a4d4a9676771e81cfa80c95ee292ddb0 544 PIRSF PIRSF001394 33 544 1.8E-221 T 11-10-2018 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 AMK58_08010 a4d4a9676771e81cfa80c95ee292ddb0 544 ProSitePatterns PS00163 Fumarate lyases signature. 459 468 - T 11-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 AMK58_08010 a4d4a9676771e81cfa80c95ee292ddb0 544 Gene3D G3DSA:3.20.130.10 354 540 2.2E-58 T 11-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 AMK58_16855 a555316740eebf3c0752072f0887e7d3 217 SUPERFAMILY SSF53335 12 207 4.33E-44 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_16855 a555316740eebf3c0752072f0887e7d3 217 ProSitePatterns PS01279 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 131 146 - T 11-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 AMK58_16855 a555316740eebf3c0752072f0887e7d3 217 Hamap MF_00090 Protein-L-isoaspartate O-methyltransferase [pcm]. 3 212 35.923 T 11-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 AMK58_16855 a555316740eebf3c0752072f0887e7d3 217 Gene3D G3DSA:3.40.50.150 1 211 9.5E-71 T 11-10-2018 AMK58_16855 a555316740eebf3c0752072f0887e7d3 217 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 3 208 3.1E-64 T 11-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 AMK58_16855 a555316740eebf3c0752072f0887e7d3 217 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 7 208 1.5E-57 T 11-10-2018 AMK58_00075 17925ba2d1d491c5d42aeba058e67564 192 SMART SM00014 70 181 3.6E-7 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMK58_00075 17925ba2d1d491c5d42aeba058e67564 192 Gene3D G3DSA:1.20.144.10 101 190 1.9E-11 T 11-10-2018 AMK58_00075 17925ba2d1d491c5d42aeba058e67564 192 SUPERFAMILY SSF48317 47 186 2.62E-20 T 11-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily AMK58_00075 17925ba2d1d491c5d42aeba058e67564 192 Pfam PF01569 PAP2 superfamily 75 183 9.7E-13 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMK58_27950 b1a8da57a1661c648510a5aebf4bac97 94 Pfam PF01527 Transposase 4 75 9.2E-11 T 11-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMK58_27950 b1a8da57a1661c648510a5aebf4bac97 94 SUPERFAMILY SSF48295 2 59 8.37E-15 T 11-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMK58_05200 ec82d050cac6f138f2b446e6fcb54298 111 Pfam PF04380 Membrane fusogenic activity 3 78 6.9E-26 T 11-10-2018 IPR007475 Membrane fusogenic activity AMK58_10770 026d349d9031cda6ba94f2d465b86f1d 219 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 76 146 6.2E-9 T 11-10-2018 AMK58_10770 026d349d9031cda6ba94f2d465b86f1d 219 Gene3D G3DSA:3.40.50.150 39 209 4.4E-20 T 11-10-2018 AMK58_10770 026d349d9031cda6ba94f2d465b86f1d 219 SUPERFAMILY SSF53335 44 183 1.81E-22 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_22075 7cb6098c04d1268c76d7468de760ab52 427 SMART SM00749 286 349 1.0E-7 T 11-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria AMK58_22075 7cb6098c04d1268c76d7468de760ab52 427 Pfam PF04972 BON domain 281 349 1.3E-19 T 11-10-2018 IPR007055 BON domain AMK58_26010 c62083228385b6b770e79275e921bddf 162 Pfam PF01799 [2Fe-2S] binding domain 78 150 4.2E-24 T 11-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMK58_26010 c62083228385b6b770e79275e921bddf 162 SUPERFAMILY SSF54292 7 83 6.42E-24 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMK58_26010 c62083228385b6b770e79275e921bddf 162 SUPERFAMILY SSF47741 89 158 1.2E-26 T 11-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily AMK58_26010 c62083228385b6b770e79275e921bddf 162 Gene3D G3DSA:3.10.20.30 1 80 1.4E-29 T 11-10-2018 IPR012675 Beta-grasp domain superfamily AMK58_26010 c62083228385b6b770e79275e921bddf 162 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 44 52 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AMK58_26010 c62083228385b6b770e79275e921bddf 162 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 11 64 1.0E-6 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMK58_26010 c62083228385b6b770e79275e921bddf 162 Gene3D G3DSA:1.10.150.120 81 161 1.0E-25 T 11-10-2018 AMK58_15485 8a9dc4b44e381f338d140babd11ac645 422 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 275 376 1.6E-42 T 11-10-2018 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 AMK58_15485 8a9dc4b44e381f338d140babd11ac645 422 SUPERFAMILY SSF81648 278 394 1.81E-41 T 11-10-2018 IPR036150 Cytochrome b/b6, C-terminal domain superfamily GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 AMK58_15485 8a9dc4b44e381f338d140babd11ac645 422 PIRSF PIRSF038885 6 405 1.6E-192 T 11-10-2018 IPR030689 Cytochrome b GO:0006122|GO:0008121|GO:0009055|GO:0045275 Reactome: R-HSA-611105 AMK58_15485 8a9dc4b44e381f338d140babd11ac645 422 Pfam PF00033 Cytochrome b/b6/petB 33 218 8.5E-76 T 11-10-2018 IPR005797 Cytochrome b/b6, N-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 AMK58_15485 8a9dc4b44e381f338d140babd11ac645 422 Gene3D G3DSA:1.20.810.10 3 419 6.6E-162 T 11-10-2018 IPR027387 Cytochrome b/b6-like domain superfamily Reactome: R-HSA-611105 AMK58_15485 8a9dc4b44e381f338d140babd11ac645 422 SUPERFAMILY SSF81342 15 277 7.85E-107 T 11-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 AMK58_14435 2714c12a10e27b160070393c06092699 391 SUPERFAMILY SSF51604 123 382 8.52E-56 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMK58_14435 2714c12a10e27b160070393c06092699 391 Pfam PF13378 Enolase C-terminal domain-like 168 374 4.0E-44 T 11-10-2018 IPR029065 Enolase C-terminal domain-like AMK58_14435 2714c12a10e27b160070393c06092699 391 SMART SM00922 162 259 1.1E-19 T 11-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AMK58_14435 2714c12a10e27b160070393c06092699 391 Gene3D G3DSA:3.20.20.120 129 389 1.4E-69 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMK58_14435 2714c12a10e27b160070393c06092699 391 SUPERFAMILY SSF54826 1 139 1.05E-28 T 11-10-2018 AMK58_14435 2714c12a10e27b160070393c06092699 391 Gene3D G3DSA:3.30.390.10 1 127 4.3E-65 T 11-10-2018 IPR029017 Enolase-like, N-terminal AMK58_05520 3d43dff65239e50a3bd979a13dce6cab 339 Gene3D G3DSA:3.40.50.720 1 182 2.0E-76 T 11-10-2018 AMK58_05520 3d43dff65239e50a3bd979a13dce6cab 339 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 14 178 3.8E-75 T 11-10-2018 IPR013116 Ketol-acid reductoisomerase, N-terminal KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AMK58_05520 3d43dff65239e50a3bd979a13dce6cab 339 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 184 327 1.3E-68 T 11-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AMK58_05520 3d43dff65239e50a3bd979a13dce6cab 339 SUPERFAMILY SSF51735 1 183 1.39E-76 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_05520 3d43dff65239e50a3bd979a13dce6cab 339 PIRSF PIRSF000116 203 332 1.3E-11 T 11-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AMK58_05520 3d43dff65239e50a3bd979a13dce6cab 339 PIRSF PIRSF000116 4 206 4.1E-48 T 11-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AMK58_05520 3d43dff65239e50a3bd979a13dce6cab 339 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 14 327 1.7E-134 T 11-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AMK58_05520 3d43dff65239e50a3bd979a13dce6cab 339 SUPERFAMILY SSF48179 184 331 9.69E-73 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMK58_05520 3d43dff65239e50a3bd979a13dce6cab 339 Hamap MF_00435 Ketol-acid reductoisomerase (NADP(+)) [ilvC]. 1 329 46.01 T 11-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AMK58_05520 3d43dff65239e50a3bd979a13dce6cab 339 Gene3D G3DSA:1.10.3730.40 183 339 1.6E-76 T 11-10-2018 AMK58_21240 9b2ba04ff488d26be7161aa96fa8bf26 74 TIGRFAM TIGR02811 formate_TAT: formate dehydrogenase region TAT target 12 70 9.0E-16 T 11-10-2018 IPR014177 Putative formate dehydrogenase, TAT signal-containing AMK58_21240 9b2ba04ff488d26be7161aa96fa8bf26 74 PIRSF PIRSF036704 9 73 1.0E-13 T 11-10-2018 IPR014177 Putative formate dehydrogenase, TAT signal-containing AMK58_21240 9b2ba04ff488d26be7161aa96fa8bf26 74 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 17 47 9.1E-4 T 11-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal AMK58_18300 77b4d2cc066a4be3087f54761b8ae993 398 Gene3D G3DSA:3.40.50.12780 13 303 9.1E-27 T 11-10-2018 AMK58_18300 77b4d2cc066a4be3087f54761b8ae993 398 SUPERFAMILY SSF56801 16 395 1.7E-53 T 11-10-2018 AMK58_18300 77b4d2cc066a4be3087f54761b8ae993 398 Pfam PF13193 AMP-binding enzyme C-terminal domain 316 389 4.2E-8 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMK58_18300 77b4d2cc066a4be3087f54761b8ae993 398 Gene3D G3DSA:3.30.300.30 304 398 9.6E-15 T 11-10-2018 AMK58_18300 77b4d2cc066a4be3087f54761b8ae993 398 Pfam PF00501 AMP-binding enzyme 80 237 8.9E-16 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMK58_23710 3f27827ec2f1c10fe4d03e53c834ffc5 362 Pfam PF00005 ABC transporter 28 168 1.2E-19 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_23710 3f27827ec2f1c10fe4d03e53c834ffc5 362 SUPERFAMILY SSF50331 243 354 1.9E-17 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMK58_23710 3f27827ec2f1c10fe4d03e53c834ffc5 362 SUPERFAMILY SSF52540 9 249 1.6E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_23710 3f27827ec2f1c10fe4d03e53c834ffc5 362 Gene3D G3DSA:3.40.50.300 4 228 2.3E-51 T 11-10-2018 AMK58_23710 3f27827ec2f1c10fe4d03e53c834ffc5 362 Gene3D G3DSA:2.40.50.940 229 352 7.2E-17 T 11-10-2018 AMK58_23710 3f27827ec2f1c10fe4d03e53c834ffc5 362 SMART SM00382 34 218 1.0E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_23710 3f27827ec2f1c10fe4d03e53c834ffc5 362 Gene3D G3DSA:2.40.50.140 289 343 7.2E-17 T 11-10-2018 AMK58_06530 ae0b9d6b9e71cefb205f5a1e6c5132c4 453 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 35 450 3.5E-86 T 11-10-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 AMK58_06530 ae0b9d6b9e71cefb205f5a1e6c5132c4 453 Pfam PF13533 Biotin-lipoyl like 82 114 7.8E-9 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain AMK58_06530 ae0b9d6b9e71cefb205f5a1e6c5132c4 453 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 417 432 3.1E-40 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMK58_06530 ae0b9d6b9e71cefb205f5a1e6c5132c4 453 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 350 374 3.1E-40 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMK58_06530 ae0b9d6b9e71cefb205f5a1e6c5132c4 453 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 432 452 3.1E-40 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMK58_06530 ae0b9d6b9e71cefb205f5a1e6c5132c4 453 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 41 64 3.1E-40 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMK58_06530 ae0b9d6b9e71cefb205f5a1e6c5132c4 453 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 83 103 3.1E-40 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMK58_06530 ae0b9d6b9e71cefb205f5a1e6c5132c4 453 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 317 338 3.1E-40 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMK58_06530 ae0b9d6b9e71cefb205f5a1e6c5132c4 453 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 374 397 3.1E-40 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMK58_06530 ae0b9d6b9e71cefb205f5a1e6c5132c4 453 Pfam PF13437 HlyD family secretion protein 305 415 3.4E-12 T 11-10-2018 AMK58_06530 ae0b9d6b9e71cefb205f5a1e6c5132c4 453 Gene3D G3DSA:2.40.50.100 76 135 6.9E-10 T 11-10-2018 AMK58_06530 ae0b9d6b9e71cefb205f5a1e6c5132c4 453 Gene3D G3DSA:2.40.30.170 342 430 5.7E-12 T 11-10-2018 AMK58_06530 ae0b9d6b9e71cefb205f5a1e6c5132c4 453 Gene3D G3DSA:2.40.50.100 305 341 5.7E-12 T 11-10-2018 AMK58_06530 ae0b9d6b9e71cefb205f5a1e6c5132c4 453 Gene3D G3DSA:1.10.287.470 243 304 5.7E-12 T 11-10-2018 AMK58_25540 cb8be41ffbb89d29f7530d69ad2a28e2 208 Gene3D G3DSA:3.30.70.100 99 193 1.4E-20 T 11-10-2018 AMK58_25540 cb8be41ffbb89d29f7530d69ad2a28e2 208 Pfam PF03992 Antibiotic biosynthesis monooxygenase 106 175 2.6E-5 T 11-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain AMK58_25540 cb8be41ffbb89d29f7530d69ad2a28e2 208 SUPERFAMILY SSF54909 97 181 3.89E-10 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel AMK58_05350 d0f206e078b3ae959a6d280b7920b71c 145 Gene3D G3DSA:3.10.580.10 1 142 1.1E-43 T 11-10-2018 AMK58_05350 d0f206e078b3ae959a6d280b7920b71c 145 Pfam PF00571 CBS domain 5 62 6.9E-11 T 11-10-2018 IPR000644 CBS domain AMK58_05350 d0f206e078b3ae959a6d280b7920b71c 145 Pfam PF00571 CBS domain 73 128 3.0E-12 T 11-10-2018 IPR000644 CBS domain AMK58_05350 d0f206e078b3ae959a6d280b7920b71c 145 SMART SM00116 80 128 6.7E-6 T 11-10-2018 IPR000644 CBS domain AMK58_05350 d0f206e078b3ae959a6d280b7920b71c 145 SMART SM00116 14 62 9.2E-9 T 11-10-2018 IPR000644 CBS domain AMK58_05350 d0f206e078b3ae959a6d280b7920b71c 145 SUPERFAMILY SSF54631 4 140 4.3E-34 T 11-10-2018 AMK58_13245 a52f0cd4eaca20d593ae99b9bb0078d7 187 SUPERFAMILY SSF52317 8 176 7.84E-31 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_13245 a52f0cd4eaca20d593ae99b9bb0078d7 187 Gene3D G3DSA:3.40.50.880 1 185 2.8E-39 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_13245 a52f0cd4eaca20d593ae99b9bb0078d7 187 Pfam PF01965 DJ-1/PfpI family 8 175 8.7E-34 T 11-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 AMK58_18845 661d5cd0526c00cf920ba79f3c89e760 152 SUPERFAMILY SSF160719 38 143 1.96E-10 T 11-10-2018 AMK58_18845 661d5cd0526c00cf920ba79f3c89e760 152 Pfam PF04965 Gene 25-like lysozyme 40 131 5.8E-14 T 11-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD AMK58_18845 661d5cd0526c00cf920ba79f3c89e760 152 TIGRFAM TIGR03357 VI_zyme: type VI secretion system lysozyme-like protein 14 148 3.2E-26 T 11-10-2018 IPR017737 Type VI secretion system, lysozyme-related protein AMK58_21195 c7106f05c2c48a90c79b478e93ee0500 248 SUPERFAMILY SSF161098 48 229 5.63E-32 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_21195 c7106f05c2c48a90c79b478e93ee0500 248 Gene3D G3DSA:1.10.3720.10 47 241 2.6E-23 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_21195 c7106f05c2c48a90c79b478e93ee0500 248 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 72 244 1.7E-24 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_21020 d91f2054c32a2de160517f5718a9701c 445 PIRSF PIRSF000445 3 424 1.6E-107 T 11-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AMK58_21020 d91f2054c32a2de160517f5718a9701c 445 SUPERFAMILY SSF51735 162 315 1.51E-23 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_21020 d91f2054c32a2de160517f5718a9701c 445 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 5 398 1.5E-83 T 11-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AMK58_21020 d91f2054c32a2de160517f5718a9701c 445 SUPERFAMILY SSF69075 319 396 3.79E-8 T 11-10-2018 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AMK58_21020 d91f2054c32a2de160517f5718a9701c 445 Gene3D G3DSA:3.30.460.30 3 159 4.0E-42 T 11-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AMK58_21020 d91f2054c32a2de160517f5718a9701c 445 SUPERFAMILY SSF69742 4 159 1.44E-33 T 11-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AMK58_21020 d91f2054c32a2de160517f5718a9701c 445 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 8 157 4.6E-34 T 11-10-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AMK58_21020 d91f2054c32a2de160517f5718a9701c 445 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 173 307 3.5E-21 T 11-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase AMK58_21020 d91f2054c32a2de160517f5718a9701c 445 Gene3D G3DSA:3.40.50.720 162 312 1.9E-30 T 11-10-2018 AMK58_21020 d91f2054c32a2de160517f5718a9701c 445 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 322 405 4.1E-8 T 11-10-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AMK58_21020 d91f2054c32a2de160517f5718a9701c 445 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 4 414 22.597 T 11-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AMK58_14965 d6620482ccd48268a283fe746f24bc82 400 Gene3D G3DSA:3.40.50.2300 28 330 1.4E-113 T 11-10-2018 AMK58_14965 d6620482ccd48268a283fe746f24bc82 400 SUPERFAMILY SSF53822 28 399 1.02E-92 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMK58_14965 d6620482ccd48268a283fe746f24bc82 400 Pfam PF13458 Periplasmic binding protein 28 364 9.2E-90 T 11-10-2018 IPR028081 Leucine-binding protein domain AMK58_14965 d6620482ccd48268a283fe746f24bc82 400 Gene3D G3DSA:3.40.50.2300 147 279 1.4E-113 T 11-10-2018 AMK58_04960 db9b368af936cabcf860c50a1bc4b6e1 141 SUPERFAMILY SSF69118 13 133 1.7E-29 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMK58_04960 db9b368af936cabcf860c50a1bc4b6e1 141 Pfam PF02627 Carboxymuconolactone decarboxylase family 45 124 4.7E-17 T 11-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMK58_04960 db9b368af936cabcf860c50a1bc4b6e1 141 Gene3D G3DSA:1.20.1290.10 13 134 8.2E-29 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMK58_26170 6f7a91570d99f63ec344089de33b471c 318 Pfam PF00892 EamA-like transporter family 171 295 2.9E-13 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_26170 6f7a91570d99f63ec344089de33b471c 318 Pfam PF00892 EamA-like transporter family 30 161 1.1E-17 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_26170 6f7a91570d99f63ec344089de33b471c 318 SUPERFAMILY SSF103481 70 165 6.15E-17 T 11-10-2018 AMK58_26170 6f7a91570d99f63ec344089de33b471c 318 SUPERFAMILY SSF103481 204 304 3.01E-12 T 11-10-2018 AMK58_21450 fc748b6ce61384a36b9929993ed17137 293 Gene3D G3DSA:1.10.10.2830 110 223 1.1E-22 T 11-10-2018 AMK58_21450 fc748b6ce61384a36b9929993ed17137 293 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 34 184 3.0E-43 T 11-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 AMK58_21450 fc748b6ce61384a36b9929993ed17137 293 Pfam PF02195 ParB-like nuclease domain 36 121 4.1E-21 T 11-10-2018 IPR003115 ParB/Sulfiredoxin AMK58_21450 fc748b6ce61384a36b9929993ed17137 293 Gene3D G3DSA:3.90.1530.30 48 109 7.6E-23 T 11-10-2018 AMK58_21450 fc748b6ce61384a36b9929993ed17137 293 SMART SM00470 35 122 7.0E-28 T 11-10-2018 IPR003115 ParB/Sulfiredoxin AMK58_21450 fc748b6ce61384a36b9929993ed17137 293 SUPERFAMILY SSF110849 34 160 8.89E-25 T 11-10-2018 IPR036086 ParB/Sulfiredoxin superfamily AMK58_18965 fdc6b60a00231ede3b059b422c0f0fa4 174 Pfam PF02632 BioY family 25 166 9.2E-37 T 11-10-2018 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 AMK58_18965 fdc6b60a00231ede3b059b422c0f0fa4 174 PIRSF PIRSF016661 1 174 1.2E-43 T 11-10-2018 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 AMK58_18965 fdc6b60a00231ede3b059b422c0f0fa4 174 Gene3D G3DSA:1.10.1760.20 1 170 5.6E-41 T 11-10-2018 AMK58_02065 56ff9aa89a8e1b4e1d67b7058170044b 646 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 24 80 7.2E-22 T 11-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 AMK58_02065 56ff9aa89a8e1b4e1d67b7058170044b 646 Pfam PF13193 AMP-binding enzyme C-terminal domain 528 606 1.6E-25 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMK58_02065 56ff9aa89a8e1b4e1d67b7058170044b 646 SUPERFAMILY SSF56801 13 638 1.44E-188 T 11-10-2018 AMK58_02065 56ff9aa89a8e1b4e1d67b7058170044b 646 Gene3D G3DSA:3.40.50.12780 52 512 3.5E-109 T 11-10-2018 AMK58_02065 56ff9aa89a8e1b4e1d67b7058170044b 646 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 2 642 54.348 T 11-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 AMK58_02065 56ff9aa89a8e1b4e1d67b7058170044b 646 ProSitePatterns PS00455 Putative AMP-binding domain signature. 258 269 - T 11-10-2018 IPR020845 AMP-binding, conserved site AMK58_02065 56ff9aa89a8e1b4e1d67b7058170044b 646 Pfam PF00501 AMP-binding enzyme 82 519 2.1E-95 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMK58_02065 56ff9aa89a8e1b4e1d67b7058170044b 646 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 21 640 0.0 T 11-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 AMK58_02065 56ff9aa89a8e1b4e1d67b7058170044b 646 Gene3D G3DSA:3.30.300.30 515 646 2.6E-31 T 11-10-2018 AMK58_25595 aa662c5e103994fc80fa920a206254b5 168 SUPERFAMILY SSF110087 6 147 1.44E-50 T 11-10-2018 IPR036182 Copper chaperone PCuAC superfamily AMK58_25595 aa662c5e103994fc80fa920a206254b5 168 Gene3D G3DSA:2.60.40.1890 35 148 2.1E-39 T 11-10-2018 IPR036182 Copper chaperone PCuAC superfamily AMK58_25595 aa662c5e103994fc80fa920a206254b5 168 Pfam PF04314 Copper chaperone PCu(A)C 31 139 7.8E-40 T 11-10-2018 IPR007410 Copper chaperone PCuAC AMK58_13095 48bf9e69e25e9302668c15e48dca1beb 133 Pfam PF04024 PspC domain 14 70 4.6E-17 T 11-10-2018 IPR007168 Phage shock protein, PspC, N-terminal AMK58_13095 48bf9e69e25e9302668c15e48dca1beb 133 TIGRFAM TIGR02978 phageshock_pspC: phage shock protein C 13 131 1.9E-33 T 11-10-2018 IPR014320 Phage shock protein, PspC AMK58_23500 7b49db426d4b669f17015021e4db6733 319 Pfam PF00491 Arginase family 32 307 2.2E-55 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 AMK58_23500 7b49db426d4b669f17015021e4db6733 319 Gene3D G3DSA:3.40.800.10 5 313 4.9E-72 T 11-10-2018 AMK58_23500 7b49db426d4b669f17015021e4db6733 319 SUPERFAMILY SSF52768 8 311 1.3E-64 T 11-10-2018 IPR023696 Ureohydrolase domain superfamily AMK58_24920 3e5f1145e688ebf3e2cba6425d5e1554 343 Gene3D G3DSA:3.40.190.170 22 335 2.7E-60 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily AMK58_24920 3e5f1145e688ebf3e2cba6425d5e1554 343 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 51 323 5.3E-44 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 AMK58_24920 3e5f1145e688ebf3e2cba6425d5e1554 343 SUPERFAMILY SSF53850 146 271 1.17E-6 T 11-10-2018 AMK58_27785 3e5f1145e688ebf3e2cba6425d5e1554 343 Gene3D G3DSA:3.40.190.170 22 335 2.7E-60 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily AMK58_27785 3e5f1145e688ebf3e2cba6425d5e1554 343 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 51 323 5.3E-44 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 AMK58_27785 3e5f1145e688ebf3e2cba6425d5e1554 343 SUPERFAMILY SSF53850 146 271 1.17E-6 T 11-10-2018 AMK58_07480 39b535c5e9f00f732215abf41a9b9e40 404 SUPERFAMILY SSF53822 31 402 4.37E-93 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMK58_07480 39b535c5e9f00f732215abf41a9b9e40 404 Gene3D G3DSA:3.40.50.2300 34 343 7.0E-114 T 11-10-2018 AMK58_07480 39b535c5e9f00f732215abf41a9b9e40 404 Pfam PF13458 Periplasmic binding protein 31 368 8.5E-92 T 11-10-2018 IPR028081 Leucine-binding protein domain AMK58_07480 39b535c5e9f00f732215abf41a9b9e40 404 Gene3D G3DSA:3.40.50.2300 150 282 7.0E-114 T 11-10-2018 AMK58_14910 894f6c72f00556ff70e24ec3537638e6 143 SUPERFAMILY SSF159664 14 137 9.81E-29 T 11-10-2018 IPR036518 CobE/GbiG C-terminal domain superfamily GO:0009236 AMK58_14910 894f6c72f00556ff70e24ec3537638e6 143 Pfam PF01890 Cobalamin synthesis G C-terminus 14 136 1.0E-25 T 11-10-2018 IPR002750 CobE/GbiG C-terminal domain GO:0009236 AMK58_14910 894f6c72f00556ff70e24ec3537638e6 143 Gene3D G3DSA:3.30.420.180 6 140 6.9E-35 T 11-10-2018 IPR036518 CobE/GbiG C-terminal domain superfamily GO:0009236 AMK58_09635 6ae6c30fcb158d01ff5c88974c6043a8 378 SUPERFAMILY SSF50939 94 371 8.97E-28 T 11-10-2018 IPR036278 Sialidase superfamily KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18|Reactome: R-HSA-1660662|Reactome: R-HSA-4085001 AMK58_09635 6ae6c30fcb158d01ff5c88974c6043a8 378 Gene3D G3DSA:2.120.10.10 1 377 1.7E-104 T 11-10-2018 AMK58_09635 6ae6c30fcb158d01ff5c88974c6043a8 378 Pfam PF13088 BNR repeat-like domain 145 355 6.7E-17 T 11-10-2018 IPR011040 Sialidase KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18|Reactome: R-HSA-1660662|Reactome: R-HSA-4085001 AMK58_24235 609d94bf85fb60d772a297f278d3825c 192 Pfam PF04264 YceI-like domain 27 188 2.0E-48 T 11-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like AMK58_24235 609d94bf85fb60d772a297f278d3825c 192 Gene3D G3DSA:2.40.128.110 25 192 4.0E-58 T 11-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily AMK58_24235 609d94bf85fb60d772a297f278d3825c 192 SMART SM00867 26 190 1.7E-71 T 11-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like AMK58_24235 609d94bf85fb60d772a297f278d3825c 192 SUPERFAMILY SSF101874 24 191 2.35E-58 T 11-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily AMK58_29235 b226a4179213a96a989bbc1618c2811f 787 Gene3D G3DSA:3.40.50.2000 139 373 2.0E-17 T 11-10-2018 AMK58_29235 b226a4179213a96a989bbc1618c2811f 787 SUPERFAMILY SSF53756 25 377 4.4E-26 T 11-10-2018 AMK58_29235 b226a4179213a96a989bbc1618c2811f 787 Gene3D G3DSA:3.40.50.2000 173 358 2.0E-17 T 11-10-2018 AMK58_29235 b226a4179213a96a989bbc1618c2811f 787 Pfam PF13692 Glycosyl transferases group 1 196 343 1.3E-9 T 11-10-2018 AMK58_16840 3d0c70d20ca549b1b3089bcf1e3ba615 387 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 220 382 4.2E-48 T 11-10-2018 IPR000160 GGDEF domain AMK58_16840 3d0c70d20ca549b1b3089bcf1e3ba615 387 SUPERFAMILY SSF55073 228 382 7.06E-51 T 11-10-2018 IPR029787 Nucleotide cyclase AMK58_16840 3d0c70d20ca549b1b3089bcf1e3ba615 387 Gene3D G3DSA:3.30.70.270 218 386 2.2E-58 T 11-10-2018 AMK58_16840 3d0c70d20ca549b1b3089bcf1e3ba615 387 Pfam PF00990 Diguanylate cyclase, GGDEF domain 225 379 1.9E-45 T 11-10-2018 IPR000160 GGDEF domain AMK58_16840 3d0c70d20ca549b1b3089bcf1e3ba615 387 SMART SM00267 212 383 5.8E-59 T 11-10-2018 IPR000160 GGDEF domain AMK58_25900 047b4dacef03335f09f49312fe88210e 204 SUPERFAMILY SSF52499 9 203 1.01E-48 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 AMK58_25900 047b4dacef03335f09f49312fe88210e 204 Gene3D G3DSA:3.40.50.850 3 204 7.0E-61 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 AMK58_25900 047b4dacef03335f09f49312fe88210e 204 Pfam PF00857 Isochorismatase family 26 198 6.6E-37 T 11-10-2018 IPR000868 Isochorismatase-like GO:0003824 AMK58_17430 020741f5a0f84f09bb4ff21d93e2a53c 212 Gene3D G3DSA:1.20.1050.10 92 200 1.9E-22 T 11-10-2018 AMK58_17430 020741f5a0f84f09bb4ff21d93e2a53c 212 SUPERFAMILY SSF47616 81 208 3.0E-25 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMK58_17430 020741f5a0f84f09bb4ff21d93e2a53c 212 Pfam PF02798 Glutathione S-transferase, N-terminal domain 10 84 6.2E-16 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMK58_17430 020741f5a0f84f09bb4ff21d93e2a53c 212 Pfam PF00043 Glutathione S-transferase, C-terminal domain 109 197 9.5E-12 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal AMK58_17430 020741f5a0f84f09bb4ff21d93e2a53c 212 SUPERFAMILY SSF52833 11 88 5.28E-21 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_17430 020741f5a0f84f09bb4ff21d93e2a53c 212 Gene3D G3DSA:3.40.30.10 1 88 5.6E-24 T 11-10-2018 AMK58_08160 b9d6271c42ace9e26b3ef87afaa2c9dc 250 Pfam PF00005 ABC transporter 29 165 7.2E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_08160 b9d6271c42ace9e26b3ef87afaa2c9dc 250 Gene3D G3DSA:3.40.50.300 6 241 6.3E-64 T 11-10-2018 AMK58_08160 b9d6271c42ace9e26b3ef87afaa2c9dc 250 SUPERFAMILY SSF52540 10 224 6.41E-68 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_08160 b9d6271c42ace9e26b3ef87afaa2c9dc 250 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_08160 b9d6271c42ace9e26b3ef87afaa2c9dc 250 SMART SM00382 36 215 4.9E-18 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_10950 6ed767cea1d384d843232cb13803534c 231 SUPERFAMILY SSF53271 17 224 7.47E-46 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like AMK58_10950 6ed767cea1d384d843232cb13803534c 231 Pfam PF00156 Phosphoribosyl transferase domain 59 164 7.2E-13 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMK58_10950 6ed767cea1d384d843232cb13803534c 231 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 231 28.64 T 11-10-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMK58_10950 6ed767cea1d384d843232cb13803534c 231 Gene3D G3DSA:3.40.50.2020 5 231 1.3E-65 T 11-10-2018 AMK58_06455 37419a558ef48e440e0efb09140b6e24 145 Pfam PF12836 Helix-hairpin-helix motif 69 127 6.1E-14 T 11-10-2018 AMK58_06455 37419a558ef48e440e0efb09140b6e24 145 Gene3D G3DSA:1.10.150.320 59 127 1.5E-15 T 11-10-2018 AMK58_06455 37419a558ef48e440e0efb09140b6e24 145 SUPERFAMILY SSF81585 63 129 4.84E-16 T 11-10-2018 AMK58_23810 28220fe28bd19bfc81175c93b647329c 194 Pfam PF16998 17 kDa outer membrane surface antigen 113 191 2.5E-7 T 11-10-2018 IPR032635 Surface antigen domain AMK58_23810 28220fe28bd19bfc81175c93b647329c 194 PIRSF PIRSF002721 44 192 2.7E-28 T 11-10-2018 IPR016364 Surface antigen, Rickettsia type AMK58_23810 28220fe28bd19bfc81175c93b647329c 194 Pfam PF05433 Glycine zipper 2TM domain 65 103 9.1E-6 T 11-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 AMK58_05860 5a893843b0be2e9152d15adb05c6d001 231 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 100 189 1.8E-10 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMK58_05860 5a893843b0be2e9152d15adb05c6d001 231 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 89 196 1.0E-9 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMK58_05860 5a893843b0be2e9152d15adb05c6d001 231 SUPERFAMILY SSF56784 10 225 2.13E-55 T 11-10-2018 IPR036412 HAD-like superfamily AMK58_05860 5a893843b0be2e9152d15adb05c6d001 231 Pfam PF13419 Haloacid dehalogenase-like hydrolase 16 196 3.8E-32 T 11-10-2018 AMK58_05860 5a893843b0be2e9152d15adb05c6d001 231 Gene3D G3DSA:1.10.150.240 27 92 5.9E-55 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 AMK58_05860 5a893843b0be2e9152d15adb05c6d001 231 Gene3D G3DSA:3.40.50.1000 16 215 5.9E-55 T 11-10-2018 IPR023214 HAD superfamily AMK58_07360 cd06fa941cbb65ed214ea412d2410a39 417 Gene3D G3DSA:3.40.50.150 102 379 1.1E-95 T 11-10-2018 AMK58_07360 cd06fa941cbb65ed214ea412d2410a39 417 SUPERFAMILY SSF53335 119 379 4.91E-79 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_07360 cd06fa941cbb65ed214ea412d2410a39 417 Pfam PF02353 Mycolic acid cyclopropane synthetase 111 374 3.1E-89 T 11-10-2018 AMK58_07360 cd06fa941cbb65ed214ea412d2410a39 417 PIRSF PIRSF003085 1 396 6.1E-137 T 11-10-2018 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 AMK58_07650 8591af51f508155017fe5b0037c83e3e 399 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 90 155 2.3E-16 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMK58_07650 8591af51f508155017fe5b0037c83e3e 399 SUPERFAMILY SSF161098 91 158 8.01E-13 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_07650 8591af51f508155017fe5b0037c83e3e 399 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 110 394 5.6E-14 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_07650 8591af51f508155017fe5b0037c83e3e 399 Gene3D G3DSA:1.10.3720.10 185 395 1.9E-32 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_07650 8591af51f508155017fe5b0037c83e3e 399 SUPERFAMILY SSF161098 190 383 2.75E-25 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_21115 de7788a48d8cc637d0a4d2e00566285c 482 SUPERFAMILY SSF51971 148 402 2.18E-64 T 11-10-2018 AMK58_21115 de7788a48d8cc637d0a4d2e00566285c 482 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 151 458 2.8E-29 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMK58_21115 de7788a48d8cc637d0a4d2e00566285c 482 Gene3D G3DSA:3.50.50.60 257 401 2.2E-43 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_21115 de7788a48d8cc637d0a4d2e00566285c 482 Gene3D G3DSA:1.10.1060.10 9 145 5.3E-34 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AMK58_21115 de7788a48d8cc637d0a4d2e00566285c 482 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 25 136 2.7E-37 T 11-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 AMK58_21115 de7788a48d8cc637d0a4d2e00566285c 482 TIGRFAM TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit 9 468 6.1E-155 T 11-10-2018 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 GO:0006537|GO:0016639 AMK58_21115 de7788a48d8cc637d0a4d2e00566285c 482 PRINTS PR00419 Adrenodoxin reductase family signature 293 307 1.4E-32 T 11-10-2018 AMK58_21115 de7788a48d8cc637d0a4d2e00566285c 482 PRINTS PR00419 Adrenodoxin reductase family signature 327 340 1.4E-32 T 11-10-2018 AMK58_21115 de7788a48d8cc637d0a4d2e00566285c 482 PRINTS PR00419 Adrenodoxin reductase family signature 173 186 1.4E-32 T 11-10-2018 AMK58_21115 de7788a48d8cc637d0a4d2e00566285c 482 PRINTS PR00419 Adrenodoxin reductase family signature 150 172 1.4E-32 T 11-10-2018 AMK58_21115 de7788a48d8cc637d0a4d2e00566285c 482 PRINTS PR00419 Adrenodoxin reductase family signature 215 225 1.4E-32 T 11-10-2018 AMK58_21115 de7788a48d8cc637d0a4d2e00566285c 482 SUPERFAMILY SSF46548 6 159 4.66E-37 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AMK58_21115 de7788a48d8cc637d0a4d2e00566285c 482 Gene3D G3DSA:3.40.50.720 146 256 1.1E-11 T 11-10-2018 AMK58_07455 8670180510e9f05d942137cb3ad66f81 322 Gene3D G3DSA:2.60.200.40 142 306 4.2E-26 T 11-10-2018 AMK58_07455 8670180510e9f05d942137cb3ad66f81 322 Pfam PF00781 Diacylglycerol kinase catalytic domain 20 142 1.3E-22 T 11-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 AMK58_07455 8670180510e9f05d942137cb3ad66f81 322 Gene3D G3DSA:3.40.50.10330 11 141 8.5E-26 T 11-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 AMK58_07455 8670180510e9f05d942137cb3ad66f81 322 SMART SM00046 18 146 0.0034 T 11-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 AMK58_07455 8670180510e9f05d942137cb3ad66f81 322 SUPERFAMILY SSF111331 17 314 2.29E-57 T 11-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily AMK58_26430 84b2b1a52499aad2242e6b48a600dcd0 319 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 32 277 5.4E-72 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 AMK58_26430 84b2b1a52499aad2242e6b48a600dcd0 319 PIRSF PIRSF006470 1 318 4.6E-95 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 AMK58_26430 84b2b1a52499aad2242e6b48a600dcd0 319 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 27 303 6.0E-89 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 AMK58_26430 84b2b1a52499aad2242e6b48a600dcd0 319 Gene3D G3DSA:3.40.190.170 20 319 3.6E-116 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily AMK58_17570 73b8b6860cb6d29b5826aec43c93a18a 232 Pfam PF13419 Haloacid dehalogenase-like hydrolase 18 189 4.4E-28 T 11-10-2018 AMK58_17570 73b8b6860cb6d29b5826aec43c93a18a 232 SUPERFAMILY SSF56784 16 199 2.34E-40 T 11-10-2018 IPR036412 HAD-like superfamily AMK58_17570 73b8b6860cb6d29b5826aec43c93a18a 232 Gene3D G3DSA:1.10.150.730 30 92 3.6E-47 T 11-10-2018 AMK58_17570 73b8b6860cb6d29b5826aec43c93a18a 232 Gene3D G3DSA:3.40.50.1000 18 192 3.6E-47 T 11-10-2018 IPR023214 HAD superfamily AMK58_07895 992755d00ab844b2b9351b285ab73a8d 174 Pfam PF13420 Acetyltransferase (GNAT) domain 3 157 1.2E-25 T 11-10-2018 AMK58_07895 992755d00ab844b2b9351b285ab73a8d 174 Gene3D G3DSA:3.40.630.30 1 173 1.4E-49 T 11-10-2018 AMK58_07895 992755d00ab844b2b9351b285ab73a8d 174 SUPERFAMILY SSF55729 3 165 2.74E-31 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_10775 049abe55cf632329d69c448e11ad2f10 258 Pfam PF13646 HEAT repeats 85 169 2.0E-6 T 11-10-2018 AMK58_10775 049abe55cf632329d69c448e11ad2f10 258 SUPERFAMILY SSF48371 85 254 5.76E-35 T 11-10-2018 IPR016024 Armadillo-type fold AMK58_10775 049abe55cf632329d69c448e11ad2f10 258 Gene3D G3DSA:1.25.40.290 141 255 7.9E-27 T 11-10-2018 AMK58_05975 0b653953fd54fe11e89119271e4444f2 386 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 125 140 - T 11-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMK58_05975 0b653953fd54fe11e89119271e4444f2 386 SUPERFAMILY SSF51717 118 381 8.11E-94 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMK58_05975 0b653953fd54fe11e89119271e4444f2 386 Gene3D G3DSA:3.20.20.20 106 385 1.1E-102 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMK58_05975 0b653953fd54fe11e89119271e4444f2 386 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 125 378 1.6E-92 T 11-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 AMK58_05975 0b653953fd54fe11e89119271e4444f2 386 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 159 172 - T 11-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMK58_05975 0b653953fd54fe11e89119271e4444f2 386 Pfam PF00809 Pterin binding enzyme 126 365 3.8E-76 T 11-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMK58_04265 d2970a60ff3332879fd078288de736e8 178 TIGRFAM TIGR01841 phasin: phasin family protein 86 169 1.1E-11 T 11-10-2018 IPR010127 Phasin, subfamily 1 AMK58_04265 d2970a60ff3332879fd078288de736e8 178 Pfam PF09361 Phasin protein 67 165 6.6E-23 T 11-10-2018 IPR018968 Phasin AMK58_08465 ab0641ae9c73ada23e4515cffe4bc36a 349 SUPERFAMILY SSF53901 3 208 3.09E-49 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_08465 ab0641ae9c73ada23e4515cffe4bc36a 349 Gene3D G3DSA:3.40.47.10 211 347 1.1E-30 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_08465 ab0641ae9c73ada23e4515cffe4bc36a 349 PIRSF PIRSF000451 1 349 6.0E-109 T 11-10-2018 IPR011141 Polyketide synthase, type III GO:0009058|GO:0016747 AMK58_08465 ab0641ae9c73ada23e4515cffe4bc36a 349 Pfam PF02797 Chalcone and stilbene synthases, C-terminal domain 216 324 5.1E-11 T 11-10-2018 IPR012328 Chalcone/stilbene synthase, C-terminal AMK58_08465 ab0641ae9c73ada23e4515cffe4bc36a 349 Gene3D G3DSA:3.40.47.10 5 209 1.3E-59 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_08465 ab0641ae9c73ada23e4515cffe4bc36a 349 SUPERFAMILY SSF53901 210 347 1.09E-26 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_08465 ab0641ae9c73ada23e4515cffe4bc36a 349 Pfam PF00195 Chalcone and stilbene synthases, N-terminal domain 76 204 3.7E-18 T 11-10-2018 IPR001099 Chalcone/stilbene synthase, N-terminal AMK58_20040 949d1a00bab1add9cec2cf4e75c01ce9 254 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 203 219 1.4E-6 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMK58_20040 949d1a00bab1add9cec2cf4e75c01ce9 254 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 219 234 1.4E-6 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMK58_20040 949d1a00bab1add9cec2cf4e75c01ce9 254 SMART SM00419 197 246 1.7E-5 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMK58_20040 949d1a00bab1add9cec2cf4e75c01ce9 254 Pfam PF00027 Cyclic nucleotide-binding domain 70 146 5.2E-12 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_20040 949d1a00bab1add9cec2cf4e75c01ce9 254 Gene3D G3DSA:2.60.120.10 62 174 8.5E-35 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_20040 949d1a00bab1add9cec2cf4e75c01ce9 254 SUPERFAMILY SSF46785 176 252 2.81E-12 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_20040 949d1a00bab1add9cec2cf4e75c01ce9 254 SMART SM00100 43 161 1.5E-14 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_20040 949d1a00bab1add9cec2cf4e75c01ce9 254 Gene3D G3DSA:1.10.10.10 175 254 6.9E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_20040 949d1a00bab1add9cec2cf4e75c01ce9 254 Pfam PF13545 Crp-like helix-turn-helix domain 178 252 4.5E-16 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMK58_20040 949d1a00bab1add9cec2cf4e75c01ce9 254 SUPERFAMILY SSF51206 38 173 4.45E-26 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like AMK58_10530 c6df860f32c11215a22e77701167087d 238 Pfam PF00005 ABC transporter 22 166 1.7E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_10530 c6df860f32c11215a22e77701167087d 238 Gene3D G3DSA:3.40.50.300 2 238 1.1E-64 T 11-10-2018 AMK58_10530 c6df860f32c11215a22e77701167087d 238 SMART SM00382 31 230 5.0E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_10530 c6df860f32c11215a22e77701167087d 238 SUPERFAMILY SSF52540 4 234 7.58E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_10530 c6df860f32c11215a22e77701167087d 238 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_22205 bf1be12dd3dd421a45c32f6c8502bfbe 509 Pfam PF13193 AMP-binding enzyme C-terminal domain 415 488 6.1E-11 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMK58_22205 bf1be12dd3dd421a45c32f6c8502bfbe 509 ProSitePatterns PS00455 Putative AMP-binding domain signature. 164 175 - T 11-10-2018 IPR020845 AMP-binding, conserved site AMK58_22205 bf1be12dd3dd421a45c32f6c8502bfbe 509 Pfam PF00501 AMP-binding enzyme 13 405 3.4E-87 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMK58_22205 bf1be12dd3dd421a45c32f6c8502bfbe 509 Gene3D G3DSA:3.40.50.12780 10 401 5.1E-101 T 11-10-2018 AMK58_22205 bf1be12dd3dd421a45c32f6c8502bfbe 509 Gene3D G3DSA:3.30.300.30 402 498 2.2E-19 T 11-10-2018 AMK58_22205 bf1be12dd3dd421a45c32f6c8502bfbe 509 SUPERFAMILY SSF56801 9 499 2.09E-129 T 11-10-2018 AMK58_24600 45041693f5b8c365706a4e6db1f79d35 750 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 555 727 4.6E-8 T 11-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain AMK58_24600 45041693f5b8c365706a4e6db1f79d35 750 Pfam PF13807 G-rich domain on putative tyrosine kinase 412 485 2.6E-9 T 11-10-2018 IPR032807 Tyrosine kinase, G-rich domain AMK58_24600 45041693f5b8c365706a4e6db1f79d35 750 SUPERFAMILY SSF52540 554 728 4.34E-33 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_24600 45041693f5b8c365706a4e6db1f79d35 750 Pfam PF02706 Chain length determinant protein 19 109 2.4E-8 T 11-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 AMK58_24600 45041693f5b8c365706a4e6db1f79d35 750 Gene3D G3DSA:3.40.50.300 480 740 1.4E-60 T 11-10-2018 AMK58_05870 17a7509036a82e359393f9dea7742094 137 Pfam PF03640 Secreted repeat of unknown function 93 135 1.8E-20 T 11-10-2018 IPR005297 Lipoprotein repeat AMK58_05870 17a7509036a82e359393f9dea7742094 137 Pfam PF03640 Secreted repeat of unknown function 39 81 4.4E-15 T 11-10-2018 IPR005297 Lipoprotein repeat AMK58_05870 17a7509036a82e359393f9dea7742094 137 PIRSF PIRSF029720 3 137 5.2E-53 T 11-10-2018 IPR014558 Uncharacterised conserved lipoprotein AMK58_04155 57f7cdac522dd9af061ade6585f17423 442 SUPERFAMILY SSF88713 219 402 1.18E-56 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMK58_04155 57f7cdac522dd9af061ade6585f17423 442 Pfam PF01522 Polysaccharide deacetylase 220 330 2.7E-29 T 11-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMK58_04155 57f7cdac522dd9af061ade6585f17423 442 Gene3D G3DSA:3.20.20.370 209 409 1.8E-57 T 11-10-2018 AMK58_22405 d7d59c8cbb13b9c324f9ca71c689213c 234 Pfam PF04476 4-HFC-P synthase 4 223 3.4E-63 T 11-10-2018 IPR007565 (5-formylfuran-3-yl)methyl phosphate synthase KEGG: 00680+4.2.3.153|MetaCyc: PWY-5254 AMK58_22405 d7d59c8cbb13b9c324f9ca71c689213c 234 PIRSF PIRSF015957 2 233 3.4E-41 T 11-10-2018 IPR007565 (5-formylfuran-3-yl)methyl phosphate synthase KEGG: 00680+4.2.3.153|MetaCyc: PWY-5254 AMK58_01375 369ac8c46448aef662c99bc04514c42b 411 TIGRFAM TIGR00032 argG: argininosuccinate synthase 11 401 9.9E-142 T 11-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMK58_01375 369ac8c46448aef662c99bc04514c42b 411 Pfam PF00764 Arginosuccinate synthase 13 401 7.8E-154 T 11-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMK58_01375 369ac8c46448aef662c99bc04514c42b 411 Gene3D G3DSA:3.40.50.620 10 181 7.5E-68 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_01375 369ac8c46448aef662c99bc04514c42b 411 Hamap MF_00005 Argininosuccinate synthase [argG]. 9 408 52.658 T 11-10-2018 IPR023434 Argininosuccinate synthase, type 1 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMK58_01375 369ac8c46448aef662c99bc04514c42b 411 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 15 23 - T 11-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMK58_01375 369ac8c46448aef662c99bc04514c42b 411 SUPERFAMILY SSF52402 10 175 2.43E-47 T 11-10-2018 AMK58_01375 369ac8c46448aef662c99bc04514c42b 411 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 125 136 - T 11-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMK58_01375 369ac8c46448aef662c99bc04514c42b 411 SUPERFAMILY SSF69864 182 408 1.31E-93 T 11-10-2018 AMK58_01375 369ac8c46448aef662c99bc04514c42b 411 Gene3D G3DSA:3.90.1260.10 185 410 3.6E-98 T 11-10-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMK58_07125 87689783c57c5610ec6863164a29ab34 156 Pfam PF11736 Protein of unknown function (DUF3299) 68 141 3.7E-5 T 11-10-2018 IPR021727 Protein of unknown function DUF3299 AMK58_07125 87689783c57c5610ec6863164a29ab34 156 Gene3D G3DSA:2.40.50.870 35 153 2.3E-7 T 11-10-2018 AMK58_05015 f986df44ba9b41cfc21a4115389332ef 147 Gene3D G3DSA:3.30.530.20 1 146 1.1E-36 T 11-10-2018 IPR023393 START-like domain superfamily AMK58_05015 f986df44ba9b41cfc21a4115389332ef 147 Pfam PF06240 Carbon monoxide dehydrogenase subunit G (CoxG) 5 144 1.8E-24 T 11-10-2018 IPR010419 Carbon monoxide dehydrogenase subunit G AMK58_05015 f986df44ba9b41cfc21a4115389332ef 147 SUPERFAMILY SSF55961 1 144 3.3E-32 T 11-10-2018 AMK58_01080 8a967f51855f37669678edc02647ad30 319 Gene3D G3DSA:3.40.50.1100 54 156 1.0E-122 T 11-10-2018 AMK58_01080 8a967f51855f37669678edc02647ad30 319 SUPERFAMILY SSF53686 9 315 1.7E-99 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMK58_01080 8a967f51855f37669678edc02647ad30 319 Gene3D G3DSA:3.40.50.1100 17 310 1.0E-122 T 11-10-2018 AMK58_01080 8a967f51855f37669678edc02647ad30 319 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 16 303 1.5E-64 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AMK58_01080 8a967f51855f37669678edc02647ad30 319 TIGRFAM TIGR01139 cysK: cysteine synthase A 15 315 1.0E-134 T 11-10-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 AMK58_01080 8a967f51855f37669678edc02647ad30 319 TIGRFAM TIGR01136 cysKM: cysteine synthase 15 315 4.4E-129 T 11-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 AMK58_00935 7221751450197cfc0e1509ecd8718f8c 132 Pfam PF11162 Protein of unknown function (DUF2946) 7 129 5.4E-7 T 11-10-2018 IPR021333 Protein of unknown function DUF2946 AMK58_22445 a5e3ff44bbefd1d8a216d12fc541caa6 139 SUPERFAMILY SSF46626 15 134 3.73E-14 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_22445 a5e3ff44bbefd1d8a216d12fc541caa6 139 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 44 120 1.3E-7 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_22445 a5e3ff44bbefd1d8a216d12fc541caa6 139 Gene3D G3DSA:1.10.760.10 16 128 1.1E-11 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_03885 b3b9c22544ca11e220555191eb5c0281 314 SUPERFAMILY SSF54211 11 136 9.86E-42 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMK58_03885 b3b9c22544ca11e220555191eb5c0281 314 Gene3D G3DSA:3.30.1700.10 139 300 1.7E-61 T 11-10-2018 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 AMK58_03885 b3b9c22544ca11e220555191eb5c0281 314 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 13 284 1.5E-110 T 11-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 AMK58_03885 b3b9c22544ca11e220555191eb5c0281 314 Gene3D G3DSA:3.30.230.20 11 138 7.0E-50 T 11-10-2018 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 AMK58_03885 b3b9c22544ca11e220555191eb5c0281 314 SUPERFAMILY SSF54211 144 286 3.34E-50 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMK58_03885 b3b9c22544ca11e220555191eb5c0281 314 Hamap MF_00388 UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 11 288 44.714 T 11-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 AMK58_03885 b3b9c22544ca11e220555191eb5c0281 314 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 11 294 9.4E-104 T 11-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 AMK58_21200 52a55a3f469e295070499b4f3e81016e 256 Pfam PF00005 ABC transporter 20 160 5.3E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_21200 52a55a3f469e295070499b4f3e81016e 256 SUPERFAMILY SSF52540 15 219 1.82E-66 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_21200 52a55a3f469e295070499b4f3e81016e 256 SMART SM00382 29 209 8.9E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_21200 52a55a3f469e295070499b4f3e81016e 256 Gene3D G3DSA:3.40.50.300 6 229 2.1E-67 T 11-10-2018 AMK58_21200 52a55a3f469e295070499b4f3e81016e 256 ProSitePatterns PS00211 ABC transporters family signature. 132 146 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_00720 042937de63f09d3874cc9fce86f9d301 529 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 25 515 20.865 T 11-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 AMK58_00720 042937de63f09d3874cc9fce86f9d301 529 Gene3D G3DSA:3.60.110.10 283 496 4.4E-13 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMK58_00720 042937de63f09d3874cc9fce86f9d301 529 Pfam PF00795 Carbon-nitrogen hydrolase 247 494 9.6E-24 T 11-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 AMK58_00720 042937de63f09d3874cc9fce86f9d301 529 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 79 476 1.5E-92 T 11-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 AMK58_00720 042937de63f09d3874cc9fce86f9d301 529 SUPERFAMILY SSF56317 243 494 7.72E-38 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMK58_18060 6b90791033316357ba3359a1deb0f86a 629 Pfam PF03471 Transporter associated domain 493 564 2.4E-4 T 11-10-2018 IPR005170 Transporter-associated domain AMK58_18060 6b90791033316357ba3359a1deb0f86a 629 Pfam PF00999 Sodium/hydrogen exchanger family 13 387 4.8E-47 T 11-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AMK58_18060 6b90791033316357ba3359a1deb0f86a 629 Gene3D G3DSA:1.20.1530.20 5 390 7.9E-15 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily AMK58_25960 388ad6cf6700647ff99cc130c86478ed 423 PIRSF PIRSF039004 2 420 1.8E-114 T 11-10-2018 IPR020043 Deacetylase Atu3266-like GO:0019213 AMK58_25960 388ad6cf6700647ff99cc130c86478ed 423 Gene3D G3DSA:3.20.20.140 62 360 9.8E-86 T 11-10-2018 AMK58_25960 388ad6cf6700647ff99cc130c86478ed 423 Pfam PF01979 Amidohydrolase family 333 375 5.8E-6 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AMK58_25960 388ad6cf6700647ff99cc130c86478ed 423 SUPERFAMILY SSF51556 62 357 1.3E-41 T 11-10-2018 IPR032466 Metal-dependent hydrolase AMK58_25960 388ad6cf6700647ff99cc130c86478ed 423 SUPERFAMILY SSF51338 3 376 5.0E-17 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMK58_25960 388ad6cf6700647ff99cc130c86478ed 423 Gene3D G3DSA:2.30.40.10 17 405 9.8E-86 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMK58_03950 f97817e0f6c46018b7f511e19e80cb66 483 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 3 477 30.864 T 11-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 AMK58_03950 f97817e0f6c46018b7f511e19e80cb66 483 Pfam PF01225 Mur ligase family, catalytic domain 18 64 4.4E-9 T 11-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 AMK58_03950 f97817e0f6c46018b7f511e19e80cb66 483 SUPERFAMILY SSF53623 97 326 2.29E-67 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMK58_03950 f97817e0f6c46018b7f511e19e80cb66 483 Pfam PF08245 Mur ligase middle domain 104 306 1.9E-46 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 AMK58_03950 f97817e0f6c46018b7f511e19e80cb66 483 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 17 477 8.5E-131 T 11-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 AMK58_03950 f97817e0f6c46018b7f511e19e80cb66 483 Gene3D G3DSA:3.40.1390.10 1 96 8.0E-21 T 11-10-2018 AMK58_03950 f97817e0f6c46018b7f511e19e80cb66 483 Gene3D G3DSA:3.90.190.20 336 481 3.6E-54 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMK58_03950 f97817e0f6c46018b7f511e19e80cb66 483 SUPERFAMILY SSF63418 14 95 2.22E-18 T 11-10-2018 IPR035911 MurE/MurF, N-terminal AMK58_03950 f97817e0f6c46018b7f511e19e80cb66 483 Gene3D G3DSA:3.40.1190.10 98 331 5.7E-64 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMK58_03950 f97817e0f6c46018b7f511e19e80cb66 483 SUPERFAMILY SSF53244 327 479 5.8E-44 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMK58_03950 f97817e0f6c46018b7f511e19e80cb66 483 Pfam PF02875 Mur ligase family, glutamate ligase domain 327 412 3.3E-18 T 11-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 AMK58_17720 63cb1919df740e2f1a97f66a9a1036be 84 Pfam PF13617 YnbE-like lipoprotein 14 67 3.6E-24 T 11-10-2018 IPR025985 YnbE-like lipoprotein AMK58_17720 63cb1919df740e2f1a97f66a9a1036be 84 ProDom PD052969 LIPOPROTEIN PRECURSOR SIGNAL YNBE MEMBRANE OUTER POSSIBLE SIMILAR ECS2004 SO2063 26 70 4.0E-10 T 11-10-2018 AMK58_05880 cf5478b12f21ef9674d7e3eaf9a80868 301 Pfam PF01571 Aminomethyltransferase folate-binding domain 15 111 6.0E-10 T 11-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain AMK58_05880 cf5478b12f21ef9674d7e3eaf9a80868 301 Gene3D G3DSA:3.30.1360.120 1 294 4.7E-59 T 11-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 AMK58_05880 cf5478b12f21ef9674d7e3eaf9a80868 301 PIRSF PIRSF006487 2 118 9.5E-9 T 11-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 AMK58_05880 cf5478b12f21ef9674d7e3eaf9a80868 301 PIRSF PIRSF006487 152 269 0.35 T 11-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 AMK58_05880 cf5478b12f21ef9674d7e3eaf9a80868 301 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 169 235 1.5E-22 T 11-10-2018 IPR017703 YgfZ/GcvT conserved site AMK58_05880 cf5478b12f21ef9674d7e3eaf9a80868 301 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 210 280 1.2E-8 T 11-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 AMK58_05880 cf5478b12f21ef9674d7e3eaf9a80868 301 SUPERFAMILY SSF103025 3 224 3.77E-56 T 11-10-2018 AMK58_03350 98d91d9927633fd5f9a17dfff1c69d27 329 Pfam PF06258 Mitochondrial fission ELM1 19 320 1.8E-109 T 11-10-2018 IPR009367 Mitochondrial fission protein ELM1-like AMK58_07620 a660290a9fa4054d17cdad16a7f9486c 98 Pfam PF04800 ETC complex I subunit conserved region 2 95 6.5E-36 T 11-10-2018 IPR006885 NADH dehydrogenase ubiquinone Fe-S protein 4, mitochondrial GO:0016651|GO:0022900 AMK58_07620 a660290a9fa4054d17cdad16a7f9486c 98 Gene3D G3DSA:3.30.160.190 1 78 8.4E-32 T 11-10-2018 IPR038532 NADH dehydrogenase ubiquinone Fe-S protein 4-like superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_04115 282d9c74f3f7390a5bf968face303302 245 SUPERFAMILY SSF55961 81 215 7.27E-25 T 11-10-2018 AMK58_04115 282d9c74f3f7390a5bf968face303302 245 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 84 208 8.5E-13 T 11-10-2018 IPR005031 Coenzyme Q-binding protein COQ10, START domain Reactome: R-HSA-611105 AMK58_04115 282d9c74f3f7390a5bf968face303302 245 Gene3D G3DSA:3.30.530.20 76 220 7.0E-43 T 11-10-2018 IPR023393 START-like domain superfamily AMK58_13490 8d4769db80802d24e4334e4ce6083d30 92 Pfam PF03050 Transposase IS66 family 1 91 2.0E-19 T 11-10-2018 IPR004291 Transposase, IS66 AMK58_10295 99131e40627e4f87fb982cbf7b7e270c 63 Gene3D G3DSA:3.30.1390.20 3 61 3.5E-24 T 11-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily AMK58_10295 99131e40627e4f87fb982cbf7b7e270c 63 Pfam PF00327 Ribosomal protein L30p/L7e 8 57 1.5E-17 T 11-10-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain AMK58_10295 99131e40627e4f87fb982cbf7b7e270c 63 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 3 61 18.818 T 11-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_10295 99131e40627e4f87fb982cbf7b7e270c 63 PIRSF PIRSF002211 1 62 1.2E-26 T 11-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_10295 99131e40627e4f87fb982cbf7b7e270c 63 SUPERFAMILY SSF55129 5 60 1.29E-20 T 11-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily AMK58_10295 99131e40627e4f87fb982cbf7b7e270c 63 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 8 61 1.1E-26 T 11-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_15125 b02f01f23604058cf7485d5e4879dc63 691 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 49 684 1.2E-228 T 11-10-2018 IPR011853 TRAP C4-dicarboxylate transport system permease, fused DctM-DctQ AMK58_15125 b02f01f23604058cf7485d5e4879dc63 691 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 156 609 1.1E-122 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit AMK58_25980 0e942a0b6b5cc6b1d7f2e720f22cdaa7 290 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 275 7.9E-41 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_10250 007a018b757dfe47a1d0dbb10fdcaaa7 265 Gene3D G3DSA:3.40.50.1820 3 264 1.7E-49 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_10250 007a018b757dfe47a1d0dbb10fdcaaa7 265 PRINTS PR00111 Alpha/beta hydrolase fold signature 93 106 1.8E-9 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_10250 007a018b757dfe47a1d0dbb10fdcaaa7 265 PRINTS PR00111 Alpha/beta hydrolase fold signature 107 120 1.8E-9 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_10250 007a018b757dfe47a1d0dbb10fdcaaa7 265 PRINTS PR00111 Alpha/beta hydrolase fold signature 50 65 1.8E-9 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_10250 007a018b757dfe47a1d0dbb10fdcaaa7 265 PRINTS PR00111 Alpha/beta hydrolase fold signature 208 222 1.8E-9 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_10250 007a018b757dfe47a1d0dbb10fdcaaa7 265 SUPERFAMILY SSF53474 4 257 2.89E-48 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_10250 007a018b757dfe47a1d0dbb10fdcaaa7 265 Pfam PF00561 alpha/beta hydrolase fold 24 155 3.9E-19 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_01065 54e6617096839ddecc3762bc219281e7 145 Pfam PF02635 DsrE/DsrF-like family 18 132 1.3E-7 T 11-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein AMK58_01065 54e6617096839ddecc3762bc219281e7 145 SUPERFAMILY SSF75169 7 134 3.03E-13 T 11-10-2018 IPR027396 DsrEFH-like AMK58_01065 54e6617096839ddecc3762bc219281e7 145 Gene3D G3DSA:3.40.1260.10 2 145 2.1E-19 T 11-10-2018 IPR027396 DsrEFH-like AMK58_05570 be6b25031ab7820dc5a997749436ed16 330 SUPERFAMILY SSF53822 41 272 2.59E-16 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMK58_05570 be6b25031ab7820dc5a997749436ed16 330 Pfam PF02608 ABC transporter substrate-binding protein PnrA-like 32 320 8.2E-60 T 11-10-2018 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 AMK58_05570 be6b25031ab7820dc5a997749436ed16 330 Gene3D G3DSA:3.40.50.2300 131 323 6.1E-97 T 11-10-2018 AMK58_05570 be6b25031ab7820dc5a997749436ed16 330 Gene3D G3DSA:3.40.50.2300 32 287 6.1E-97 T 11-10-2018 AMK58_17715 72e5386b192a756536e64e5043b9adbb 111 Pfam PF07027 Protein of unknown function (DUF1318) 24 111 3.2E-25 T 11-10-2018 IPR008309 Uncharacterised conserved protein UCP025560 AMK58_17715 72e5386b192a756536e64e5043b9adbb 111 PIRSF PIRSF025560 1 111 6.3E-25 T 11-10-2018 IPR008309 Uncharacterised conserved protein UCP025560 AMK58_04120 42de71d56b4c7cd7d2cc3f78aea8883e 391 Gene3D G3DSA:3.90.180.10 10 377 3.7E-122 T 11-10-2018 AMK58_04120 42de71d56b4c7cd7d2cc3f78aea8883e 391 Gene3D G3DSA:3.40.50.720 177 342 3.7E-122 T 11-10-2018 AMK58_04120 42de71d56b4c7cd7d2cc3f78aea8883e 391 Pfam PF13823 Alcohol dehydrogenase GroES-associated 1 23 5.1E-10 T 11-10-2018 IPR027399 Alcohol dehydrogenase GroES-associated AMK58_04120 42de71d56b4c7cd7d2cc3f78aea8883e 391 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 153 4.6E-24 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMK58_04120 42de71d56b4c7cd7d2cc3f78aea8883e 391 SUPERFAMILY SSF50129 1 186 6.09E-54 T 11-10-2018 IPR011032 GroES-like superfamily AMK58_04120 42de71d56b4c7cd7d2cc3f78aea8883e 391 SMART SM00829 8 389 7.7E-4 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMK58_04120 42de71d56b4c7cd7d2cc3f78aea8883e 391 SUPERFAMILY SSF51735 163 353 3.16E-59 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_04120 42de71d56b4c7cd7d2cc3f78aea8883e 391 Pfam PF00107 Zinc-binding dehydrogenase 196 268 5.9E-12 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMK58_07785 e620e1d0ca3c018d09a1cb61465a108b 516 SUPERFAMILY SSF52374 4 350 5.36E-113 T 11-10-2018 AMK58_07785 e620e1d0ca3c018d09a1cb61465a108b 516 Gene3D G3DSA:2.170.220.10 118 230 1.4E-155 T 11-10-2018 AMK58_07785 e620e1d0ca3c018d09a1cb61465a108b 516 Pfam PF09334 tRNA synthetases class I (M) 7 364 3.3E-111 T 11-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMK58_07785 e620e1d0ca3c018d09a1cb61465a108b 516 Hamap MF_01228 Methionine--tRNA ligase [metG]. 1 509 48.178 T 11-10-2018 IPR023457 Methionine-tRNA synthetase, type 2 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMK58_07785 e620e1d0ca3c018d09a1cb61465a108b 516 SUPERFAMILY SSF47323 353 509 3.36E-41 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMK58_07785 e620e1d0ca3c018d09a1cb61465a108b 516 Gene3D G3DSA:3.40.50.620 7 337 1.4E-155 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_07785 e620e1d0ca3c018d09a1cb61465a108b 516 PRINTS PR01041 Methionyl-tRNA synthetase signature 89 100 2.2E-32 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMK58_07785 e620e1d0ca3c018d09a1cb61465a108b 516 PRINTS PR01041 Methionyl-tRNA synthetase signature 9 22 2.2E-32 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMK58_07785 e620e1d0ca3c018d09a1cb61465a108b 516 PRINTS PR01041 Methionyl-tRNA synthetase signature 260 275 2.2E-32 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMK58_07785 e620e1d0ca3c018d09a1cb61465a108b 516 PRINTS PR01041 Methionyl-tRNA synthetase signature 352 363 2.2E-32 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMK58_07785 e620e1d0ca3c018d09a1cb61465a108b 516 PRINTS PR01041 Methionyl-tRNA synthetase signature 41 55 2.2E-32 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMK58_07785 e620e1d0ca3c018d09a1cb61465a108b 516 PRINTS PR01041 Methionyl-tRNA synthetase signature 228 239 2.2E-32 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMK58_07785 e620e1d0ca3c018d09a1cb61465a108b 516 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 7 477 5.1E-158 T 11-10-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMK58_07785 e620e1d0ca3c018d09a1cb61465a108b 516 Gene3D G3DSA:1.10.730.10 341 514 1.9E-52 T 11-10-2018 AMK58_24030 804e1c03c1c19842b84fb8915a8d2716 399 Pfam PF13480 Acetyltransferase (GNAT) domain 174 314 8.6E-12 T 11-10-2018 IPR038740 BioF2-like, acetyltransferase domain KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 AMK58_24030 804e1c03c1c19842b84fb8915a8d2716 399 SUPERFAMILY SSF55729 173 325 7.95E-27 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_24030 804e1c03c1c19842b84fb8915a8d2716 399 SUPERFAMILY SSF55729 22 165 9.1E-12 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_24030 804e1c03c1c19842b84fb8915a8d2716 399 Gene3D G3DSA:3.40.630.30 158 325 7.6E-41 T 11-10-2018 AMK58_24030 804e1c03c1c19842b84fb8915a8d2716 399 Gene3D G3DSA:3.40.630.30 35 332 7.6E-41 T 11-10-2018 AMK58_03680 12e88e74aad784bd4da3fa8ad1e30df0 370 Pfam PF01594 AI-2E family transporter 37 358 8.0E-47 T 11-10-2018 IPR002549 Transmembrane protein TqsA-like AMK58_01360 56e63d24a14edebc4df360a2837a206b 389 Gene3D G3DSA:1.10.150.530 20 80 3.9E-19 T 11-10-2018 AMK58_01360 56e63d24a14edebc4df360a2837a206b 389 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 18 365 9.6E-125 T 11-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 AMK58_01360 56e63d24a14edebc4df360a2837a206b 389 Gene3D G3DSA:3.20.20.70 82 352 1.1E-107 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_01360 56e63d24a14edebc4df360a2837a206b 389 Pfam PF04055 Radical SAM superfamily 124 294 1.1E-18 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMK58_01360 56e63d24a14edebc4df360a2837a206b 389 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 20 367 73.233 T 11-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 AMK58_01360 56e63d24a14edebc4df360a2837a206b 389 PIRSF PIRSF006004 15 381 8.5E-144 T 11-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 AMK58_01360 56e63d24a14edebc4df360a2837a206b 389 SUPERFAMILY SSF102114 117 325 1.31E-14 T 11-10-2018 AMK58_11945 5c2b04fdfe06304cdb080f891b403d17 144 Pfam PF06170 Protein of unknown function (DUF983) 30 114 2.1E-31 T 11-10-2018 IPR009325 Protein of unknown function DUF983 AMK58_23440 209fee65d78066ce3f3df2b8faf460d9 146 SUPERFAMILY SSF53795 12 101 2.11E-18 T 11-10-2018 AMK58_23440 209fee65d78066ce3f3df2b8faf460d9 146 Pfam PF07475 HPr Serine kinase C-terminal domain 12 114 2.6E-18 T 11-10-2018 IPR011104 HPr kinase/phosphorylase, C-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 AMK58_23440 209fee65d78066ce3f3df2b8faf460d9 146 Gene3D G3DSA:3.40.50.300 10 141 4.6E-33 T 11-10-2018 AMK58_16565 adca1c62d85293be554cfa5e71e65210 254 SUPERFAMILY SSF161098 48 234 3.27E-34 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_16565 adca1c62d85293be554cfa5e71e65210 254 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 74 243 1.3E-23 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_16565 adca1c62d85293be554cfa5e71e65210 254 Gene3D G3DSA:1.10.3720.10 49 244 9.6E-29 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_22875 b5582a8c43e30f4f1e294d936023abd9 167 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 26 115 1.6E-36 T 11-10-2018 IPR012997 Rare lipoprotein A AMK58_22875 b5582a8c43e30f4f1e294d936023abd9 167 SUPERFAMILY SSF50685 22 112 5.93E-14 T 11-10-2018 IPR036908 RlpA-like domain superfamily AMK58_22875 b5582a8c43e30f4f1e294d936023abd9 167 Pfam PF03330 Lytic transglycolase 25 113 1.7E-24 T 11-10-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain AMK58_22875 b5582a8c43e30f4f1e294d936023abd9 167 Gene3D G3DSA:2.40.40.10 23 115 7.6E-37 T 11-10-2018 IPR036908 RlpA-like domain superfamily AMK58_22875 b5582a8c43e30f4f1e294d936023abd9 167 Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. 11 116 21.322 T 11-10-2018 IPR034718 Endolytic peptidoglycan transglycosylase RlpA GO:0016829 AMK58_28085 5d5f87b9ee5b48183a3318e4c1e672a4 201 SUPERFAMILY SSF52218 1 200 1.41E-49 T 11-10-2018 IPR029039 Flavoprotein-like superfamily AMK58_28085 5d5f87b9ee5b48183a3318e4c1e672a4 201 Gene3D G3DSA:3.40.50.360 1 201 9.3E-56 T 11-10-2018 IPR029039 Flavoprotein-like superfamily AMK58_28085 5d5f87b9ee5b48183a3318e4c1e672a4 201 Pfam PF02525 Flavodoxin-like fold 3 199 8.0E-44 T 11-10-2018 IPR003680 Flavodoxin-like fold AMK58_28085 5d5f87b9ee5b48183a3318e4c1e672a4 201 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 201 31.197 T 11-10-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 AMK58_25350 a3aaa801a84c338b19826eb1441f64ac 247 Hamap MF_00415 Flagellar L-ring protein [flgH]. 1 245 24.376 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 AMK58_25350 a3aaa801a84c338b19826eb1441f64ac 247 PRINTS PR01008 Flagellar L-ring protein signature 224 238 8.7E-27 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 AMK58_25350 a3aaa801a84c338b19826eb1441f64ac 247 PRINTS PR01008 Flagellar L-ring protein signature 82 94 8.7E-27 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 AMK58_25350 a3aaa801a84c338b19826eb1441f64ac 247 PRINTS PR01008 Flagellar L-ring protein signature 208 222 8.7E-27 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 AMK58_25350 a3aaa801a84c338b19826eb1441f64ac 247 PRINTS PR01008 Flagellar L-ring protein signature 161 176 8.7E-27 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 AMK58_25350 a3aaa801a84c338b19826eb1441f64ac 247 PRINTS PR01008 Flagellar L-ring protein signature 187 203 8.7E-27 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 AMK58_25350 a3aaa801a84c338b19826eb1441f64ac 247 Pfam PF02107 Flagellar L-ring protein 63 246 9.5E-56 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 AMK58_07030 e488504437b35ffbd8b07baf1a1715e0 190 SUPERFAMILY SSF52317 7 177 6.25E-50 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_07030 e488504437b35ffbd8b07baf1a1715e0 190 Pfam PF01965 DJ-1/PfpI family 8 176 3.3E-56 T 11-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 AMK58_07030 e488504437b35ffbd8b07baf1a1715e0 190 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 10 175 1.3E-51 T 11-10-2018 IPR006286 Deglycase PfpI AMK58_07030 e488504437b35ffbd8b07baf1a1715e0 190 Gene3D G3DSA:3.40.50.880 2 186 5.0E-56 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_22905 9d751f34d667fc989871f50ece4b3e12 386 Gene3D G3DSA:2.40.30.40 90 184 8.3E-80 T 11-10-2018 IPR023367 Peptidase M42, domain 2 AMK58_22905 9d751f34d667fc989871f50ece4b3e12 386 SUPERFAMILY SSF101821 87 199 8.55E-24 T 11-10-2018 AMK58_22905 9d751f34d667fc989871f50ece4b3e12 386 Gene3D G3DSA:3.40.630.10 28 354 8.3E-80 T 11-10-2018 AMK58_22905 9d751f34d667fc989871f50ece4b3e12 386 PIRSF PIRSF001123 18 357 2.3E-28 T 11-10-2018 IPR008007 Peptidase M42 AMK58_22905 9d751f34d667fc989871f50ece4b3e12 386 TIGRFAM TIGR03106 trio_M42_hydro: hydrolase, peptidase M42 family 17 358 2.7E-171 T 11-10-2018 IPR017537 Peptidase M42, hydrolase AMK58_22905 9d751f34d667fc989871f50ece4b3e12 386 SUPERFAMILY SSF53187 21 357 2.77E-44 T 11-10-2018 AMK58_22905 9d751f34d667fc989871f50ece4b3e12 386 Pfam PF05343 M42 glutamyl aminopeptidase 62 350 5.2E-66 T 11-10-2018 IPR008007 Peptidase M42 AMK58_14795 c6d4e51cd96c9d80ac02c6dea489e068 329 Pfam PF02653 Branched-chain amino acid transport system / permease component 27 304 1.1E-36 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_20970 47ef765cb078c5dea8136463d7387dc0 112 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 10 105 6.1E-19 T 11-10-2018 IPR008407 Branched-chain amino acid transport, AzlD AMK58_29245 907633df4c4ba1ea643c0d0b683cab61 120 Gene3D G3DSA:3.40.50.150 2 95 2.7E-7 T 11-10-2018 AMK58_29245 907633df4c4ba1ea643c0d0b683cab61 120 SUPERFAMILY SSF53335 7 105 4.48E-12 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_20345 594c35769a6a32582943209f67641be4 371 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 32 358 2.6E-31 T 11-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 AMK58_20345 594c35769a6a32582943209f67641be4 371 Gene3D G3DSA:3.40.630.10 2 284 2.9E-83 T 11-10-2018 AMK58_20345 594c35769a6a32582943209f67641be4 371 SUPERFAMILY SSF53187 19 361 1.95E-38 T 11-10-2018 AMK58_17755 3ca87b7157c1d66e47e6467c069d2085 1112 Pfam PF01841 Transglutaminase-like superfamily 136 246 3.2E-17 T 11-10-2018 IPR002931 Transglutaminase-like AMK58_17755 3ca87b7157c1d66e47e6467c069d2085 1112 Pfam PF09899 Putative amidoligase enzyme (DUF2126) 276 1110 0.0 T 11-10-2018 IPR018667 Domain of unknown function DUF2126 AMK58_17755 3ca87b7157c1d66e47e6467c069d2085 1112 SMART SM00460 172 248 1.6E-20 T 11-10-2018 IPR002931 Transglutaminase-like AMK58_17755 3ca87b7157c1d66e47e6467c069d2085 1112 SUPERFAMILY SSF54001 8 337 4.49E-67 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily AMK58_17755 3ca87b7157c1d66e47e6467c069d2085 1112 Gene3D G3DSA:3.10.620.30 96 282 3.5E-26 T 11-10-2018 AMK58_17755 3ca87b7157c1d66e47e6467c069d2085 1112 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 6 84 1.0E-25 T 11-10-2018 IPR013589 Bacterial transglutaminase-like, N-terminal AMK58_12905 97a960697a1badebad6defd3707221e4 342 Gene3D G3DSA:3.40.190.170 28 341 1.1E-124 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily AMK58_12905 97a960697a1badebad6defd3707221e4 342 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 49 274 2.8E-57 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 AMK58_12905 97a960697a1badebad6defd3707221e4 342 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 35 324 4.6E-76 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 AMK58_12905 97a960697a1badebad6defd3707221e4 342 SUPERFAMILY SSF53850 78 250 1.41E-6 T 11-10-2018 AMK58_12905 97a960697a1badebad6defd3707221e4 342 PIRSF PIRSF006470 1 340 2.0E-87 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 AMK58_27125 6fc7b8e48fe25d5336a767751bd6dd39 69 Gene3D G3DSA:3.10.20.30 3 69 8.7E-20 T 11-10-2018 IPR012675 Beta-grasp domain superfamily AMK58_27125 6fc7b8e48fe25d5336a767751bd6dd39 69 Pfam PF02597 ThiS family 10 69 1.9E-12 T 11-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 AMK58_27125 6fc7b8e48fe25d5336a767751bd6dd39 69 SUPERFAMILY SSF54285 4 68 5.56E-14 T 11-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp AMK58_27125 6fc7b8e48fe25d5336a767751bd6dd39 69 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 5 69 3.6E-18 T 11-10-2018 IPR010035 ThiS, thiamine-biosynthesis AMK58_18385 4b120d6172afbfeb2975c75e1281dee9 469 PIRSF PIRSF006446 1 460 3.0E-188 T 11-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 AMK58_18385 4b120d6172afbfeb2975c75e1281dee9 469 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 8 434 1.5E-158 T 11-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 AMK58_12405 8d796419cc81d06b8015ade4ffe4ed45 307 SUPERFAMILY SSF53448 1 228 2.01E-48 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_12405 8d796419cc81d06b8015ade4ffe4ed45 307 Pfam PF00535 Glycosyl transferase family 2 5 127 2.2E-27 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMK58_12405 8d796419cc81d06b8015ade4ffe4ed45 307 Gene3D G3DSA:3.90.550.10 1 200 1.8E-43 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_12200 fde9ff9e7576da5cc0ecf589437399da 467 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 4 466 5.1E-247 T 11-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 AMK58_12200 fde9ff9e7576da5cc0ecf589437399da 467 PRINTS PR00415 Aconitase family signature 135 150 8.3E-51 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMK58_12200 fde9ff9e7576da5cc0ecf589437399da 467 PRINTS PR00415 Aconitase family signature 211 224 8.3E-51 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMK58_12200 fde9ff9e7576da5cc0ecf589437399da 467 PRINTS PR00415 Aconitase family signature 121 134 8.3E-51 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMK58_12200 fde9ff9e7576da5cc0ecf589437399da 467 PRINTS PR00415 Aconitase family signature 110 118 8.3E-51 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMK58_12200 fde9ff9e7576da5cc0ecf589437399da 467 PRINTS PR00415 Aconitase family signature 288 302 8.3E-51 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMK58_12200 fde9ff9e7576da5cc0ecf589437399da 467 PRINTS PR00415 Aconitase family signature 345 356 8.3E-51 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMK58_12200 fde9ff9e7576da5cc0ecf589437399da 467 PRINTS PR00415 Aconitase family signature 197 210 8.3E-51 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMK58_12200 fde9ff9e7576da5cc0ecf589437399da 467 PRINTS PR00415 Aconitase family signature 401 414 8.3E-51 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMK58_12200 fde9ff9e7576da5cc0ecf589437399da 467 PRINTS PR00415 Aconitase family signature 84 97 8.3E-51 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMK58_12200 fde9ff9e7576da5cc0ecf589437399da 467 Gene3D G3DSA:3.30.499.20 6 288 2.1E-101 T 11-10-2018 AMK58_12200 fde9ff9e7576da5cc0ecf589437399da 467 Pfam PF00330 Aconitase family (aconitate hydratase) 9 459 1.3E-161 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMK58_12200 fde9ff9e7576da5cc0ecf589437399da 467 SUPERFAMILY SSF53732 3 466 4.05E-168 T 11-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 AMK58_12200 fde9ff9e7576da5cc0ecf589437399da 467 ProSitePatterns PS01244 Aconitase family signature 2. 401 414 - T 11-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AMK58_12200 fde9ff9e7576da5cc0ecf589437399da 467 ProSitePatterns PS00450 Aconitase family signature 1. 341 357 - T 11-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AMK58_12200 fde9ff9e7576da5cc0ecf589437399da 467 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 3 467 60.629 T 11-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 AMK58_12200 fde9ff9e7576da5cc0ecf589437399da 467 Gene3D G3DSA:3.30.499.10 329 467 3.2E-51 T 11-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 AMK58_16635 ff510d3a1609c4e887647ec8520075dc 266 SMART SM00062 39 259 3.7E-54 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMK58_16635 ff510d3a1609c4e887647ec8520075dc 266 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 40 257 5.8E-56 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMK58_16635 ff510d3a1609c4e887647ec8520075dc 266 SUPERFAMILY SSF53850 14 259 1.71E-60 T 11-10-2018 AMK58_16635 ff510d3a1609c4e887647ec8520075dc 266 Gene3D G3DSA:3.40.190.10 34 250 6.1E-61 T 11-10-2018 AMK58_16635 ff510d3a1609c4e887647ec8520075dc 266 Gene3D G3DSA:3.40.190.10 126 217 6.1E-61 T 11-10-2018 AMK58_22095 e6a2bbd483fd0f6bbadbb4bec917d4e7 204 Pfam PF13649 Methyltransferase domain 43 136 6.8E-20 T 11-10-2018 AMK58_22095 e6a2bbd483fd0f6bbadbb4bec917d4e7 204 Gene3D G3DSA:3.40.50.150 2 201 7.5E-33 T 11-10-2018 AMK58_22095 e6a2bbd483fd0f6bbadbb4bec917d4e7 204 SUPERFAMILY SSF53335 8 194 1.1E-34 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_07025 0b0d1c73a61d0e2aadccd7984006f12b 244 SUPERFAMILY SSF50346 48 106 1.51E-7 T 11-10-2018 IPR011033 PRC-barrel-like superfamily AMK58_07025 0b0d1c73a61d0e2aadccd7984006f12b 244 Pfam PF05239 PRC-barrel domain 53 103 2.7E-5 T 11-10-2018 IPR027275 PRC-barrel domain AMK58_07025 0b0d1c73a61d0e2aadccd7984006f12b 244 Gene3D G3DSA:2.30.30.240 128 219 8.9E-6 T 11-10-2018 AMK58_07025 0b0d1c73a61d0e2aadccd7984006f12b 244 Gene3D G3DSA:2.30.30.240 42 118 2.0E-10 T 11-10-2018 AMK58_10170 15a4bc767a9e520495447ff786314ad5 377 PRINTS PR01010 Flagellar P-ring protein signature 173 191 3.0E-83 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AMK58_10170 15a4bc767a9e520495447ff786314ad5 377 PRINTS PR01010 Flagellar P-ring protein signature 94 113 3.0E-83 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AMK58_10170 15a4bc767a9e520495447ff786314ad5 377 PRINTS PR01010 Flagellar P-ring protein signature 199 217 3.0E-83 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AMK58_10170 15a4bc767a9e520495447ff786314ad5 377 PRINTS PR01010 Flagellar P-ring protein signature 49 64 3.0E-83 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AMK58_10170 15a4bc767a9e520495447ff786314ad5 377 PRINTS PR01010 Flagellar P-ring protein signature 133 151 3.0E-83 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AMK58_10170 15a4bc767a9e520495447ff786314ad5 377 PRINTS PR01010 Flagellar P-ring protein signature 263 275 3.0E-83 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AMK58_10170 15a4bc767a9e520495447ff786314ad5 377 PRINTS PR01010 Flagellar P-ring protein signature 69 84 3.0E-83 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AMK58_10170 15a4bc767a9e520495447ff786314ad5 377 PRINTS PR01010 Flagellar P-ring protein signature 116 133 3.0E-83 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AMK58_10170 15a4bc767a9e520495447ff786314ad5 377 PRINTS PR01010 Flagellar P-ring protein signature 34 49 3.0E-83 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AMK58_10170 15a4bc767a9e520495447ff786314ad5 377 Pfam PF02119 Flagellar P-ring protein 34 376 1.1E-140 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AMK58_10170 15a4bc767a9e520495447ff786314ad5 377 Hamap MF_00416 Flagellar P-ring protein [flgI]. 13 377 37.077 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AMK58_26655 8ceaf426fcb89ce6ac473fa01701e7de 307 Pfam PF02653 Branched-chain amino acid transport system / permease component 20 284 1.5E-34 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_26340 12e2533922602761cc7562f332dbb549 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 4.0E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_26340 12e2533922602761cc7562f332dbb549 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 4.0E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_26340 12e2533922602761cc7562f332dbb549 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 4.0E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_26340 12e2533922602761cc7562f332dbb549 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 2.8E-21 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_26340 12e2533922602761cc7562f332dbb549 297 SUPERFAMILY SSF53850 91 295 8.69E-43 T 11-10-2018 AMK58_26340 12e2533922602761cc7562f332dbb549 297 Gene3D G3DSA:1.10.10.10 5 93 1.0E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_26340 12e2533922602761cc7562f332dbb549 297 Gene3D G3DSA:3.40.190.10 166 269 2.9E-56 T 11-10-2018 AMK58_26340 12e2533922602761cc7562f332dbb549 297 Pfam PF03466 LysR substrate binding domain 90 295 1.1E-40 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_26340 12e2533922602761cc7562f332dbb549 297 SUPERFAMILY SSF46785 4 114 1.04E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_26340 12e2533922602761cc7562f332dbb549 297 Gene3D G3DSA:3.40.190.10 94 293 2.9E-56 T 11-10-2018 AMK58_13330 d5b86194a9d9bd0a116b861257d4759e 117 Gene3D G3DSA:1.10.260.40 1 72 2.0E-16 T 11-10-2018 AMK58_13330 d5b86194a9d9bd0a116b861257d4759e 117 Pfam PF13560 Helix-turn-helix domain 9 63 2.1E-12 T 11-10-2018 AMK58_13330 d5b86194a9d9bd0a116b861257d4759e 117 SUPERFAMILY SSF47413 3 71 5.09E-16 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMK58_13330 d5b86194a9d9bd0a116b861257d4759e 117 SMART SM00530 12 67 5.0E-12 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMK58_14035 b96eecc7f875e59bd247f0fed349cc4a 1028 Gene3D G3DSA:3.40.50.2300 172 324 6.1E-56 T 11-10-2018 AMK58_14035 b96eecc7f875e59bd247f0fed349cc4a 1028 Pfam PF13458 Periplasmic binding protein 54 411 2.1E-41 T 11-10-2018 IPR028081 Leucine-binding protein domain AMK58_14035 b96eecc7f875e59bd247f0fed349cc4a 1028 SUPERFAMILY SSF53822 53 413 1.08E-48 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMK58_14035 b96eecc7f875e59bd247f0fed349cc4a 1028 Gene3D G3DSA:3.40.50.2300 59 400 6.1E-56 T 11-10-2018 AMK58_14035 b96eecc7f875e59bd247f0fed349cc4a 1028 Pfam PF00924 Mechanosensitive ion channel 801 941 2.6E-26 T 11-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 AMK58_14035 b96eecc7f875e59bd247f0fed349cc4a 1028 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 55 71 8.8E-7 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMK58_14035 b96eecc7f875e59bd247f0fed349cc4a 1028 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 77 93 8.8E-7 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMK58_14035 b96eecc7f875e59bd247f0fed349cc4a 1028 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 96 114 8.8E-7 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMK58_14035 b96eecc7f875e59bd247f0fed349cc4a 1028 Gene3D G3DSA:2.30.30.60 855 906 9.5E-8 T 11-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily AMK58_14035 b96eecc7f875e59bd247f0fed349cc4a 1028 SUPERFAMILY SSF50182 841 906 2.26E-12 T 11-10-2018 IPR010920 LSM domain superfamily AMK58_13320 5d2267ce17fe65ea21b406cbe0aa0465 248 Pfam PF02633 Creatinine amidohydrolase 7 238 6.2E-59 T 11-10-2018 IPR003785 Creatininase/formamide hydrolase KEGG: 00740+3.5.1.102|MetaCyc: PWY-6167 AMK58_13320 5d2267ce17fe65ea21b406cbe0aa0465 248 Gene3D G3DSA:3.40.50.10310 1 246 4.5E-73 T 11-10-2018 IPR024087 Creatininase-like superfamily KEGG: 00740+3.5.1.102|MetaCyc: PWY-6167 AMK58_13320 5d2267ce17fe65ea21b406cbe0aa0465 248 SUPERFAMILY SSF102215 2 244 8.24E-70 T 11-10-2018 IPR024087 Creatininase-like superfamily KEGG: 00740+3.5.1.102|MetaCyc: PWY-6167 AMK58_02985 e713c972058ab927249e9b8ee9a49a9a 513 Gene3D G3DSA:3.40.50.300 15 209 2.7E-13 T 11-10-2018 AMK58_01275 5dafc500a24cca56c08b0d0b90b32e33 119 Pfam PF00072 Response regulator receiver domain 1 111 6.2E-9 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_01275 5dafc500a24cca56c08b0d0b90b32e33 119 Gene3D G3DSA:3.40.50.2300 1 118 9.6E-17 T 11-10-2018 AMK58_01275 5dafc500a24cca56c08b0d0b90b32e33 119 SUPERFAMILY SSF52172 1 116 9.11E-19 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_01275 5dafc500a24cca56c08b0d0b90b32e33 119 SMART SM00448 1 111 2.0E-8 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_19205 9bc03b5f79900ae049a59d5f2535e740 142 Pfam PF06172 Cupin superfamily (DUF985) 8 134 4.9E-47 T 11-10-2018 IPR009327 Cupin domain of unknown function DUF985 AMK58_19205 9bc03b5f79900ae049a59d5f2535e740 142 SUPERFAMILY SSF51182 3 140 6.12E-54 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily AMK58_19205 9bc03b5f79900ae049a59d5f2535e740 142 Gene3D G3DSA:2.60.120.10 2 142 4.3E-56 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_17665 7d32d696cdf8875062961f9f27a2c132 138 Pfam PF03061 Thioesterase superfamily 34 105 3.0E-17 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AMK58_17665 7d32d696cdf8875062961f9f27a2c132 138 Gene3D G3DSA:3.10.129.10 10 138 1.1E-38 T 11-10-2018 AMK58_17665 7d32d696cdf8875062961f9f27a2c132 138 SUPERFAMILY SSF54637 20 137 1.33E-38 T 11-10-2018 IPR029069 HotDog domain superfamily AMK58_18720 4de01386f4b99c41e4c127b3c8fa2225 299 Pfam PF00892 EamA-like transporter family 152 285 3.6E-17 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_18720 4de01386f4b99c41e4c127b3c8fa2225 299 Pfam PF00892 EamA-like transporter family 5 137 2.4E-20 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_18720 4de01386f4b99c41e4c127b3c8fa2225 299 SUPERFAMILY SSF103481 38 141 5.1E-15 T 11-10-2018 AMK58_18720 4de01386f4b99c41e4c127b3c8fa2225 299 SUPERFAMILY SSF103481 188 285 5.36E-12 T 11-10-2018 AMK58_26795 16df60d4fae4cd29522e03f157e15271 391 SUPERFAMILY SSF53901 3 268 6.01E-85 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_26795 16df60d4fae4cd29522e03f157e15271 391 SUPERFAMILY SSF53901 269 390 4.97E-46 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_26795 16df60d4fae4cd29522e03f157e15271 391 Pfam PF00108 Thiolase, N-terminal domain 4 260 1.3E-104 T 11-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 AMK58_26795 16df60d4fae4cd29522e03f157e15271 391 Gene3D G3DSA:3.40.47.10 5 274 4.4E-154 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_26795 16df60d4fae4cd29522e03f157e15271 391 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 389 1.6E-144 T 11-10-2018 IPR002155 Thiolase GO:0016747 AMK58_26795 16df60d4fae4cd29522e03f157e15271 391 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 84 102 - T 11-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 AMK58_26795 16df60d4fae4cd29522e03f157e15271 391 PIRSF PIRSF000429 1 391 1.2E-126 T 11-10-2018 IPR002155 Thiolase GO:0016747 AMK58_26795 16df60d4fae4cd29522e03f157e15271 391 Pfam PF02803 Thiolase, C-terminal domain 268 390 1.0E-52 T 11-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 AMK58_26795 16df60d4fae4cd29522e03f157e15271 391 ProSitePatterns PS00737 Thiolases signature 2. 337 353 - T 11-10-2018 IPR020613 Thiolase, conserved site GO:0016747 AMK58_26795 16df60d4fae4cd29522e03f157e15271 391 Gene3D G3DSA:3.40.47.10 126 387 4.4E-154 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_26795 16df60d4fae4cd29522e03f157e15271 391 ProSitePatterns PS00099 Thiolases active site. 372 385 - T 11-10-2018 IPR020610 Thiolase, active site GO:0016747 AMK58_18445 9362a28aab8e60608ee0f23749ba1cd9 158 Gene3D G3DSA:2.40.320.10 1 150 7.5E-40 T 11-10-2018 AMK58_18445 9362a28aab8e60608ee0f23749ba1cd9 158 PIRSF PIRSF016487 1 158 5.5E-47 T 11-10-2018 IPR012042 Inorganic triphosphatase NeuTTM/CthTTM-like AMK58_18445 9362a28aab8e60608ee0f23749ba1cd9 158 Pfam PF01928 CYTH domain 4 119 4.0E-5 T 11-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 AMK58_18445 9362a28aab8e60608ee0f23749ba1cd9 158 SUPERFAMILY SSF55154 1 148 1.96E-33 T 11-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 AMK58_18445 9362a28aab8e60608ee0f23749ba1cd9 158 SMART SM01118 2 148 7.1E-15 T 11-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 AMK58_27290 99bb00865189af1cadfa2a9d497ad3bc 235 PIRSF PIRSF015000 3 219 2.2E-70 T 11-10-2018 IPR014470 Uncharacterised conserved protein UCP01500 AMK58_27290 99bb00865189af1cadfa2a9d497ad3bc 235 Pfam PF10028 Predicted integral membrane protein (DUF2270) 22 205 1.4E-68 T 11-10-2018 IPR014470 Uncharacterised conserved protein UCP01500 AMK58_03455 4e12386a55959fed5ffcbfff04281328 506 Gene3D G3DSA:3.40.309.10 266 464 7.0E-168 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMK58_03455 4e12386a55959fed5ffcbfff04281328 506 Gene3D G3DSA:3.40.605.10 23 492 7.0E-168 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMK58_03455 4e12386a55959fed5ffcbfff04281328 506 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 294 305 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AMK58_03455 4e12386a55959fed5ffcbfff04281328 506 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 261 268 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AMK58_03455 4e12386a55959fed5ffcbfff04281328 506 SUPERFAMILY SSF53720 11 498 1.01E-166 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMK58_03455 4e12386a55959fed5ffcbfff04281328 506 Pfam PF00171 Aldehyde dehydrogenase family 27 493 3.9E-170 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMK58_08890 e9b2808820649146f3c84821b29d8518 177 SUPERFAMILY SSF55729 6 151 9.95E-20 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_08890 e9b2808820649146f3c84821b29d8518 177 Gene3D G3DSA:3.40.630.30 5 161 3.3E-16 T 11-10-2018 AMK58_08890 e9b2808820649146f3c84821b29d8518 177 Pfam PF00583 Acetyltransferase (GNAT) family 54 148 7.6E-8 T 11-10-2018 IPR000182 GNAT domain AMK58_26100 803491dabd421e1984f41933bf902939 401 Pfam PF02515 CoA-transferase family III 5 376 9.6E-63 T 11-10-2018 IPR003673 CoA-transferase family III GO:0003824 AMK58_26100 803491dabd421e1984f41933bf902939 401 Gene3D G3DSA:3.30.1540.10 227 324 1.8E-72 T 11-10-2018 AMK58_26100 803491dabd421e1984f41933bf902939 401 Gene3D G3DSA:3.40.50.10540 5 394 1.8E-72 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily AMK58_26100 803491dabd421e1984f41933bf902939 401 SUPERFAMILY SSF89796 2 400 1.57E-81 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily AMK58_23285 387523ebcf16a747bd6742e9005986e9 302 Gene3D G3DSA:3.40.50.1820 21 298 9.6E-66 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_23285 387523ebcf16a747bd6742e9005986e9 302 Pfam PF00756 Putative esterase 42 206 6.0E-13 T 11-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 AMK58_23285 387523ebcf16a747bd6742e9005986e9 302 SUPERFAMILY SSF53474 31 298 7.57E-53 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_03170 461b61d6e702c821fb398cbfad77b17b 141 Gene3D G3DSA:3.10.450.50 3 140 1.8E-24 T 11-10-2018 AMK58_03170 461b61d6e702c821fb398cbfad77b17b 141 SUPERFAMILY SSF54427 10 137 2.79E-25 T 11-10-2018 IPR032710 NTF2-like domain superfamily AMK58_03170 461b61d6e702c821fb398cbfad77b17b 141 Pfam PF13577 SnoaL-like domain 11 129 5.8E-15 T 11-10-2018 IPR037401 SnoaL-like domain AMK58_25100 f6bca8906fc5a81cf9497459bf5a9a1c 403 Gene3D G3DSA:3.40.50.2300 19 145 4.0E-32 T 11-10-2018 AMK58_25100 f6bca8906fc5a81cf9497459bf5a9a1c 403 SUPERFAMILY SSF52172 53 140 1.76E-9 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_25100 f6bca8906fc5a81cf9497459bf5a9a1c 403 Pfam PF13614 AAA domain 153 306 8.9E-8 T 11-10-2018 IPR025669 AAA domain AMK58_25100 f6bca8906fc5a81cf9497459bf5a9a1c 403 SUPERFAMILY SSF52540 153 372 1.43E-30 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_25100 f6bca8906fc5a81cf9497459bf5a9a1c 403 Gene3D G3DSA:3.40.50.300 151 387 7.9E-40 T 11-10-2018 AMK58_05660 aff6e52174fa159c7c64ac37d69c4432 275 Gene3D G3DSA:3.40.50.300 3 263 1.3E-100 T 11-10-2018 AMK58_05660 aff6e52174fa159c7c64ac37d69c4432 275 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 22 241 4.6E-89 T 11-10-2018 IPR022488 Polyphosphate kinase-2-related AMK58_05660 aff6e52174fa159c7c64ac37d69c4432 275 PIRSF PIRSF028756 5 263 1.3E-82 T 11-10-2018 IPR016898 Polyphosphate kinase 2 KEGG: 00190+2.7.4.1 AMK58_05660 aff6e52174fa159c7c64ac37d69c4432 275 TIGRFAM TIGR03709 PPK2_rel_1: polyphosphate:nucleotide phosphotransferase, PPK2 family 6 251 3.3E-75 T 11-10-2018 IPR022300 Polyphosphate:nucleotide phosphotransferase, PPK2 GO:0006797|GO:0016776 KEGG: 00190+2.7.4.1 AMK58_05660 aff6e52174fa159c7c64ac37d69c4432 275 SUPERFAMILY SSF52540 52 241 2.02E-23 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_06380 f93464f7c1fc03c9cc0892f720cd44a4 159 Pfam PF00583 Acetyltransferase (GNAT) family 50 137 2.6E-16 T 11-10-2018 IPR000182 GNAT domain AMK58_06380 f93464f7c1fc03c9cc0892f720cd44a4 159 SUPERFAMILY SSF55729 21 159 2.62E-25 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_06380 f93464f7c1fc03c9cc0892f720cd44a4 159 Gene3D G3DSA:3.40.630.30 9 159 2.0E-42 T 11-10-2018 AMK58_04360 56907da7361c1cb55907fe815dae5aa9 691 Pfam PF00672 HAMP domain 350 397 2.0E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_04360 56907da7361c1cb55907fe815dae5aa9 691 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 546 653 4.4E-20 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_04360 56907da7361c1cb55907fe815dae5aa9 691 SUPERFAMILY SSF55874 486 661 1.7E-36 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_04360 56907da7361c1cb55907fe815dae5aa9 691 SUPERFAMILY SSF158472 350 400 7.85E-6 T 11-10-2018 AMK58_04360 56907da7361c1cb55907fe815dae5aa9 691 SMART SM01358 72 321 3.5E-19 T 11-10-2018 IPR032255 Helical bimodular sensor domain AMK58_04360 56907da7361c1cb55907fe815dae5aa9 691 SMART SM00304 350 403 1.7E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_04360 56907da7361c1cb55907fe815dae5aa9 691 SUPERFAMILY SSF47384 415 498 2.55E-12 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_04360 56907da7361c1cb55907fe815dae5aa9 691 PRINTS PR00344 Bacterial sensor protein C-terminal signature 601 611 2.0E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_04360 56907da7361c1cb55907fe815dae5aa9 691 PRINTS PR00344 Bacterial sensor protein C-terminal signature 616 634 2.0E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_04360 56907da7361c1cb55907fe815dae5aa9 691 PRINTS PR00344 Bacterial sensor protein C-terminal signature 583 597 2.0E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_04360 56907da7361c1cb55907fe815dae5aa9 691 PRINTS PR00344 Bacterial sensor protein C-terminal signature 640 653 2.0E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_04360 56907da7361c1cb55907fe815dae5aa9 691 Gene3D G3DSA:3.30.565.10 498 657 3.2E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_04360 56907da7361c1cb55907fe815dae5aa9 691 Gene3D G3DSA:1.20.1480.50 310 409 3.3E-10 T 11-10-2018 AMK58_04360 56907da7361c1cb55907fe815dae5aa9 691 Gene3D G3DSA:1.10.287.130 414 497 7.7E-13 T 11-10-2018 AMK58_04360 56907da7361c1cb55907fe815dae5aa9 691 SMART SM00387 543 656 9.6E-25 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_04360 56907da7361c1cb55907fe815dae5aa9 691 SMART SM00388 428 496 1.1E-6 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_19950 3a830d700a7b3de2e46b2c341d2202e2 71 Hamap MF_00715 Protein SlyX [slyX]. 4 71 14.329 T 11-10-2018 IPR007236 SlyX AMK58_19950 3a830d700a7b3de2e46b2c341d2202e2 71 Pfam PF04102 SlyX 6 71 2.5E-21 T 11-10-2018 IPR007236 SlyX AMK58_07735 f07cba64dbebd22bc52c9a833df53685 102 Pfam PF00581 Rhodanese-like domain 4 93 3.2E-12 T 11-10-2018 IPR001763 Rhodanese-like domain AMK58_07735 f07cba64dbebd22bc52c9a833df53685 102 SUPERFAMILY SSF52821 2 99 3.4E-30 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily AMK58_07735 f07cba64dbebd22bc52c9a833df53685 102 Gene3D G3DSA:3.40.250.10 2 101 3.3E-25 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily AMK58_07735 f07cba64dbebd22bc52c9a833df53685 102 SMART SM00450 2 97 7.4E-22 T 11-10-2018 IPR001763 Rhodanese-like domain AMK58_00585 74f8a27699631fe0bb9bb6e9ad6504a4 253 SMART SM00382 30 198 3.2E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_00585 74f8a27699631fe0bb9bb6e9ad6504a4 253 Gene3D G3DSA:3.40.50.300 4 224 1.3E-58 T 11-10-2018 AMK58_00585 74f8a27699631fe0bb9bb6e9ad6504a4 253 SUPERFAMILY SSF52540 4 215 7.36E-53 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_00585 74f8a27699631fe0bb9bb6e9ad6504a4 253 ProSitePatterns PS00211 ABC transporters family signature. 122 136 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_00585 74f8a27699631fe0bb9bb6e9ad6504a4 253 Pfam PF00005 ABC transporter 21 148 1.7E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_25755 7be7d861d3fb5936beb015ba36ed900e 268 Pfam PF01614 Bacterial transcriptional regulator 143 265 8.0E-34 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal AMK58_25755 7be7d861d3fb5936beb015ba36ed900e 268 Gene3D G3DSA:3.30.450.40 99 268 4.8E-58 T 11-10-2018 IPR029016 GAF-like domain superfamily AMK58_25755 7be7d861d3fb5936beb015ba36ed900e 268 SUPERFAMILY SSF46785 24 94 1.08E-10 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_25755 7be7d861d3fb5936beb015ba36ed900e 268 SMART SM00346 22 108 0.0013 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMK58_25755 7be7d861d3fb5936beb015ba36ed900e 268 SUPERFAMILY SSF55781 102 268 1.77E-50 T 11-10-2018 AMK58_25755 7be7d861d3fb5936beb015ba36ed900e 268 Pfam PF09339 IclR helix-turn-helix domain 25 74 1.7E-12 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMK58_25755 7be7d861d3fb5936beb015ba36ed900e 268 Gene3D G3DSA:1.10.10.10 18 94 5.6E-13 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_15510 4d8ee4dd889171f0bb23820f291f8165 119 Pfam PF01022 Bacterial regulatory protein, arsR family 23 67 7.8E-14 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMK58_15510 4d8ee4dd889171f0bb23820f291f8165 119 Gene3D G3DSA:1.10.10.10 2 102 3.0E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_15510 4d8ee4dd889171f0bb23820f291f8165 119 SMART SM00418 15 93 3.2E-26 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMK58_15510 4d8ee4dd889171f0bb23820f291f8165 119 SUPERFAMILY SSF46785 11 96 2.54E-24 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_15510 4d8ee4dd889171f0bb23820f291f8165 119 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 64 79 2.9E-9 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMK58_15510 4d8ee4dd889171f0bb23820f291f8165 119 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 17 32 2.9E-9 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMK58_15510 4d8ee4dd889171f0bb23820f291f8165 119 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 49 64 2.9E-9 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMK58_13855 0b607fbd34c672e9181ab897831e94fc 83 Pfam PF01909 Nucleotidyltransferase domain 34 63 1.5E-5 T 11-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 AMK58_13855 0b607fbd34c672e9181ab897831e94fc 83 SUPERFAMILY SSF81301 2 62 5.95E-13 T 11-10-2018 AMK58_21205 959ad52765b3eda5a061f77bfda32675 487 PIRSF PIRSF009414 18 484 1.6E-71 T 11-10-2018 IPR008670 Long-chain-fatty-acyl-CoA reductase, LuxC GO:0003995|GO:0008218|GO:0055114 KEGG: 00073+1.2.1.50|MetaCyc: PWY-7723 AMK58_21205 959ad52765b3eda5a061f77bfda32675 487 Pfam PF05893 Acyl-CoA reductase (LuxC) 65 467 7.6E-90 T 11-10-2018 IPR008670 Long-chain-fatty-acyl-CoA reductase, LuxC GO:0003995|GO:0008218|GO:0055114 KEGG: 00073+1.2.1.50|MetaCyc: PWY-7723 AMK58_23525 75ce417f1677c7abb2a078df759f4ab3 570 SUPERFAMILY SSF161098 303 565 5.63E-45 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_23525 75ce417f1677c7abb2a078df759f4ab3 570 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 90 273 6.2E-13 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_23525 75ce417f1677c7abb2a078df759f4ab3 570 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 373 564 1.7E-14 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_23525 75ce417f1677c7abb2a078df759f4ab3 570 Gene3D G3DSA:1.10.3720.10 18 285 3.4E-61 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_23525 75ce417f1677c7abb2a078df759f4ab3 570 Gene3D G3DSA:1.10.3720.10 301 566 5.8E-42 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_23525 75ce417f1677c7abb2a078df759f4ab3 570 SUPERFAMILY SSF161098 19 281 4.32E-51 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_20760 9b857cb547d32c4620b8abdd31e40668 286 Gene3D G3DSA:3.40.50.1980 163 282 1.3E-12 T 11-10-2018 AMK58_20760 9b857cb547d32c4620b8abdd31e40668 286 Gene3D G3DSA:3.40.50.1980 25 154 1.8E-18 T 11-10-2018 AMK58_20760 9b857cb547d32c4620b8abdd31e40668 286 Pfam PF01497 Periplasmic binding protein 37 230 8.7E-17 T 11-10-2018 IPR002491 ABC transporter periplasmic binding domain AMK58_20760 9b857cb547d32c4620b8abdd31e40668 286 SUPERFAMILY SSF53807 33 280 1.01E-34 T 11-10-2018 AMK58_01125 992ab6322d3f250d4612ba43b4d59265 272 ProSitePatterns PS00211 ABC transporters family signature. 158 172 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_01125 992ab6322d3f250d4612ba43b4d59265 272 Pfam PF00005 ABC transporter 42 186 3.2E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_01125 992ab6322d3f250d4612ba43b4d59265 272 SMART SM00382 49 242 1.9E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_01125 992ab6322d3f250d4612ba43b4d59265 272 Gene3D G3DSA:3.40.50.300 12 254 2.2E-64 T 11-10-2018 AMK58_01125 992ab6322d3f250d4612ba43b4d59265 272 SUPERFAMILY SSF52540 18 245 3.1E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_28575 69964e8b817aef59943f4282e5ab03a0 151 Gene3D G3DSA:1.10.10.10 5 55 6.3E-8 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_28575 69964e8b817aef59943f4282e5ab03a0 151 Gene3D G3DSA:3.30.70.3460 67 147 6.5E-18 T 11-10-2018 AMK58_28575 69964e8b817aef59943f4282e5ab03a0 151 Pfam PF13404 AsnC-type helix-turn-helix domain 5 48 1.2E-8 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMK58_28575 69964e8b817aef59943f4282e5ab03a0 151 SUPERFAMILY SSF46785 5 66 3.82E-6 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_04230 09f5da718a4a3510fac765013dffe65c 217 ProSitePatterns PS00530 Ribonuclease T2 family histidine active site 1. 67 74 - T 11-10-2018 IPR018188 Ribonuclease T2, His active site 1 GO:0003723|GO:0033897 Reactome: R-HSA-6798695 AMK58_04230 09f5da718a4a3510fac765013dffe65c 217 SUPERFAMILY SSF55895 31 209 1.96E-40 T 11-10-2018 IPR036430 Ribonuclease T2-like superfamily GO:0003723|GO:0033897 Reactome: R-HSA-6798695 AMK58_04230 09f5da718a4a3510fac765013dffe65c 217 Pfam PF00445 Ribonuclease T2 family 35 199 8.2E-16 T 11-10-2018 IPR001568 Ribonuclease T2-like GO:0003723|GO:0033897 Reactome: R-HSA-6798695 AMK58_04230 09f5da718a4a3510fac765013dffe65c 217 Gene3D G3DSA:3.90.730.10 31 215 6.9E-34 T 11-10-2018 IPR036430 Ribonuclease T2-like superfamily GO:0003723|GO:0033897 Reactome: R-HSA-6798695 AMK58_04230 09f5da718a4a3510fac765013dffe65c 217 ProSitePatterns PS00531 Ribonuclease T2 family histidine active site 2. 108 119 - T 11-10-2018 IPR033130 Ribonuclease T2, His active site 2 Reactome: R-HSA-6798695 AMK58_15990 086371661284d491de50ae62e0f22980 172 SMART SM00855 3 117 2.5E-9 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMK58_15990 086371661284d491de50ae62e0f22980 172 Gene3D G3DSA:3.40.50.1240 1 172 1.1E-44 T 11-10-2018 IPR029033 Histidine phosphatase superfamily AMK58_15990 086371661284d491de50ae62e0f22980 172 SUPERFAMILY SSF53254 1 170 4.52E-29 T 11-10-2018 IPR029033 Histidine phosphatase superfamily AMK58_15990 086371661284d491de50ae62e0f22980 172 PIRSF PIRSF000709 1 91 0.0017 T 11-10-2018 AMK58_15990 086371661284d491de50ae62e0f22980 172 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 89 1.2E-12 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMK58_00890 07fc3175fb8eb6ba46f6dbc702e3f9eb 280 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 280 40.673 T 11-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 AMK58_00890 07fc3175fb8eb6ba46f6dbc702e3f9eb 280 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 117 5.1E-36 T 11-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AMK58_00890 07fc3175fb8eb6ba46f6dbc702e3f9eb 280 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 279 2.0E-85 T 11-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 AMK58_00890 07fc3175fb8eb6ba46f6dbc702e3f9eb 280 SUPERFAMILY SSF81624 2 143 4.45E-39 T 11-10-2018 IPR035937 MutM-like, N-terminal AMK58_00890 07fc3175fb8eb6ba46f6dbc702e3f9eb 280 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 134 223 1.7E-24 T 11-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 AMK58_00890 07fc3175fb8eb6ba46f6dbc702e3f9eb 280 Gene3D G3DSA:3.20.190.10 1 135 6.2E-37 T 11-10-2018 IPR035937 MutM-like, N-terminal AMK58_00890 07fc3175fb8eb6ba46f6dbc702e3f9eb 280 SMART SM01232 134 226 1.2E-46 T 11-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 AMK58_00890 07fc3175fb8eb6ba46f6dbc702e3f9eb 280 SUPERFAMILY SSF46946 134 222 2.36E-27 T 11-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 AMK58_00890 07fc3175fb8eb6ba46f6dbc702e3f9eb 280 Gene3D G3DSA:1.10.8.50 145 280 5.6E-45 T 11-10-2018 AMK58_00890 07fc3175fb8eb6ba46f6dbc702e3f9eb 280 SMART SM00898 2 118 7.4E-49 T 11-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AMK58_00890 07fc3175fb8eb6ba46f6dbc702e3f9eb 280 SUPERFAMILY SSF57716 222 279 1.17E-12 T 11-10-2018 AMK58_20680 1e976218728816b5ae8c042883f1d075 103 Pfam PF04341 Protein of unknown function, DUF485 11 98 2.9E-27 T 11-10-2018 IPR007436 Protein of unknown function DUF485 AMK58_14365 8cb4aeadd417ab9f5176e47c0400356f 223 Gene3D G3DSA:3.40.50.850 13 206 4.3E-44 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 AMK58_14365 8cb4aeadd417ab9f5176e47c0400356f 223 SUPERFAMILY SSF52499 12 210 3.4E-46 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 AMK58_14365 8cb4aeadd417ab9f5176e47c0400356f 223 Pfam PF00857 Isochorismatase family 20 170 7.1E-26 T 11-10-2018 IPR000868 Isochorismatase-like GO:0003824 AMK58_02855 1e7b674fa685069fccd7d6752189511d 483 Gene3D G3DSA:1.10.10.60 233 271 2.9E-6 T 11-10-2018 AMK58_02855 1e7b674fa685069fccd7d6752189511d 483 Pfam PF01610 Transposase 88 191 9.2E-19 T 11-10-2018 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain AMK58_02855 1e7b674fa685069fccd7d6752189511d 483 Pfam PF01610 Transposase 354 478 1.0E-7 T 11-10-2018 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain AMK58_21375 e3e30ed97f682c752985c2a13bf660a0 264 Gene3D G3DSA:3.90.1720.10 136 252 7.7E-23 T 11-10-2018 AMK58_21375 e3e30ed97f682c752985c2a13bf660a0 264 SUPERFAMILY SSF54001 140 258 1.47E-25 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily AMK58_21375 e3e30ed97f682c752985c2a13bf660a0 264 Pfam PF00877 NlpC/P60 family 150 244 5.3E-15 T 11-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain AMK58_27130 18e6e3e4614197052d4d5bd4397b29b9 389 SUPERFAMILY SSF54373 236 324 1.09E-21 T 11-10-2018 AMK58_27130 18e6e3e4614197052d4d5bd4397b29b9 389 TIGRFAM TIGR02352 thiamin_ThiO: glycine oxidase ThiO 16 367 7.6E-110 T 11-10-2018 IPR012727 Glycine oxidase ThiO GO:0016491|GO:0050660 KEGG: 00730+1.4.3.19|MetaCyc: PWY-7396|MetaCyc: PWY-7806 AMK58_27130 18e6e3e4614197052d4d5bd4397b29b9 389 Gene3D G3DSA:3.30.9.10 102 324 3.9E-101 T 11-10-2018 AMK58_27130 18e6e3e4614197052d4d5bd4397b29b9 389 Gene3D G3DSA:3.50.50.60 16 364 3.9E-101 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_27130 18e6e3e4614197052d4d5bd4397b29b9 389 SUPERFAMILY SSF51905 14 381 8.42E-51 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_27130 18e6e3e4614197052d4d5bd4397b29b9 389 Pfam PF01266 FAD dependent oxidoreductase 16 362 2.6E-70 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMK58_04670 c8e17050ddfbad058c71d3c123f85fe3 295 Pfam PF07357 Dinitrogenase reductase ADP-ribosyltransferase (DRAT) 31 291 1.2E-102 T 11-10-2018 IPR009953 Dinitrogenase reductase ADP-ribosyltransferase GO:0009399|GO:0030701 AMK58_23945 6ac51d0d874727db38db54b510c0bddb 167 Pfam PF14196 L-2-amino-thiazoline-4-carboxylic acid hydrolase 20 160 2.4E-37 T 11-10-2018 IPR026002 L-2-amino-thiazoline-4-carboxylic acid hydrolase AMK58_18055 217721e6b7bd06551fcdca314578252b 263 Pfam PF13609 Gram-negative porin 39 247 9.0E-15 T 11-10-2018 AMK58_18055 217721e6b7bd06551fcdca314578252b 263 Gene3D G3DSA:2.40.160.10 9 263 8.8E-15 T 11-10-2018 IPR023614 Porin domain superfamily AMK58_18055 217721e6b7bd06551fcdca314578252b 263 SUPERFAMILY SSF56935 39 263 4.35E-15 T 11-10-2018 AMK58_16505 a4abbb4504f85596cd5a925a7362ba9c 135 ProDom PD456999 SIGNAL PRECURSOR TRANSMEMBRANE MEMBRANE YOHN INTEGRAL EXPORTED SIMILAR LIPOPROTEIN LIPOPROTEIN 73 131 1.0E-9 T 11-10-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB AMK58_16505 a4abbb4504f85596cd5a925a7362ba9c 135 Gene3D G3DSA:3.10.450.160 67 134 2.1E-12 T 11-10-2018 AMK58_16505 a4abbb4504f85596cd5a925a7362ba9c 135 Pfam PF11776 Nickel/cobalt transporter regulator 78 127 1.8E-20 T 11-10-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB AMK58_10140 2b535f78ae537284fa6c8aa8e920bf82 261 SUPERFAMILY SSF117143 93 222 6.15E-37 T 11-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like AMK58_10140 2b535f78ae537284fa6c8aa8e920bf82 261 Pfam PF00460 Flagella basal body rod protein 6 34 3.8E-10 T 11-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 AMK58_10140 2b535f78ae537284fa6c8aa8e920bf82 261 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 3 260 7.5E-109 T 11-10-2018 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 AMK58_10140 2b535f78ae537284fa6c8aa8e920bf82 261 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 182 260 1.2E-26 T 11-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain AMK58_10140 2b535f78ae537284fa6c8aa8e920bf82 261 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 146 243 6.7E-31 T 11-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G AMK58_10140 2b535f78ae537284fa6c8aa8e920bf82 261 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 3 136 1.8E-47 T 11-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G AMK58_28480 4d5ee84fc65d29857c0005b8e7024a0b 540 Gene3D G3DSA:1.10.3820.10 11 194 2.1E-35 T 11-10-2018 IPR038266 NapC/NirT cytochrome c superfamily AMK58_28480 4d5ee84fc65d29857c0005b8e7024a0b 540 SUPERFAMILY SSF48695 166 297 3.25E-5 T 11-10-2018 IPR036280 Multiheme cytochrome superfamily AMK58_28480 4d5ee84fc65d29857c0005b8e7024a0b 540 SMART SM00887 244 521 9.8E-82 T 11-10-2018 IPR019020 Cytochrome c-552/DMSO reductase-like, haem-binding domain GO:0020037 AMK58_28480 4d5ee84fc65d29857c0005b8e7024a0b 540 SUPERFAMILY SSF48695 26 183 1.4E-55 T 11-10-2018 IPR036280 Multiheme cytochrome superfamily AMK58_28480 4d5ee84fc65d29857c0005b8e7024a0b 540 Pfam PF09459 Ethylbenzene dehydrogenase 245 521 2.7E-46 T 11-10-2018 IPR019020 Cytochrome c-552/DMSO reductase-like, haem-binding domain GO:0020037 AMK58_28480 4d5ee84fc65d29857c0005b8e7024a0b 540 Gene3D G3DSA:2.60.40.1190 421 523 5.3E-7 T 11-10-2018 AMK58_28480 4d5ee84fc65d29857c0005b8e7024a0b 540 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 22 184 1.7E-72 T 11-10-2018 IPR005126 NapC/NirT cytochrome c, N-terminal AMK58_01685 48947d7913427b0339d0a6f1bd2d08c7 160 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 6 157 8.7E-52 T 11-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC AMK58_01685 48947d7913427b0339d0a6f1bd2d08c7 160 Pfam PF04073 Aminoacyl-tRNA editing domain 37 148 1.2E-21 T 11-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AMK58_01685 48947d7913427b0339d0a6f1bd2d08c7 160 Gene3D G3DSA:3.90.960.10 1 159 4.3E-50 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 AMK58_01685 48947d7913427b0339d0a6f1bd2d08c7 160 SUPERFAMILY SSF55826 6 157 1.83E-37 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 AMK58_01685 48947d7913427b0339d0a6f1bd2d08c7 160 PIRSF PIRSF006181 1 160 8.2E-48 T 11-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC AMK58_18975 2d366882fc88db41adac27e7e6b652dd 510 SUPERFAMILY SSF52096 2 254 1.2E-79 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMK58_18975 2d366882fc88db41adac27e7e6b652dd 510 Gene3D G3DSA:3.90.226.10 1 255 4.9E-96 T 11-10-2018 AMK58_18975 2d366882fc88db41adac27e7e6b652dd 510 Pfam PF01039 Carboxyl transferase domain 27 508 4.0E-200 T 11-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 AMK58_18975 2d366882fc88db41adac27e7e6b652dd 510 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 163 180 6.0E-5 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMK58_18975 2d366882fc88db41adac27e7e6b652dd 510 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 127 145 6.0E-5 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMK58_18975 2d366882fc88db41adac27e7e6b652dd 510 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 93 107 6.0E-5 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMK58_18975 2d366882fc88db41adac27e7e6b652dd 510 Gene3D G3DSA:3.90.226.10 257 510 1.2E-95 T 11-10-2018 AMK58_18975 2d366882fc88db41adac27e7e6b652dd 510 SUPERFAMILY SSF52096 252 510 2.36E-90 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMK58_22725 eb3f5f88e0236ce09de4c702efff5ee1 279 Gene3D G3DSA:1.10.10.10 21 94 1.8E-16 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_22725 eb3f5f88e0236ce09de4c702efff5ee1 279 Pfam PF09339 IclR helix-turn-helix domain 25 72 1.1E-12 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMK58_22725 eb3f5f88e0236ce09de4c702efff5ee1 279 Gene3D G3DSA:3.30.450.40 95 273 2.0E-53 T 11-10-2018 IPR029016 GAF-like domain superfamily AMK58_22725 eb3f5f88e0236ce09de4c702efff5ee1 279 SUPERFAMILY SSF46785 24 94 8.28E-13 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_22725 eb3f5f88e0236ce09de4c702efff5ee1 279 SMART SM00346 23 110 3.2E-17 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMK58_22725 eb3f5f88e0236ce09de4c702efff5ee1 279 SUPERFAMILY SSF55781 87 269 1.13E-46 T 11-10-2018 AMK58_22725 eb3f5f88e0236ce09de4c702efff5ee1 279 Pfam PF01614 Bacterial transcriptional regulator 139 265 5.7E-23 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal AMK58_22280 2b0c3d2b125f0db9832f29188dd3e117 26 TIGRFAM TIGR02107 PQQ_syn_pqqA: coenzyme PQQ precursor peptide PqqA 4 24 7.1E-6 T 11-10-2018 IPR011725 Coenzyme PQQ biosynthesis protein A GO:0018189 AMK58_22280 2b0c3d2b125f0db9832f29188dd3e117 26 Pfam PF08042 PqqA family 3 21 5.6E-5 T 11-10-2018 IPR011725 Coenzyme PQQ biosynthesis protein A GO:0018189 AMK58_04560 1a4ff4975b67dbf0136bcf491ee314da 283 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 162 182 - T 11-10-2018 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 AMK58_04560 1a4ff4975b67dbf0136bcf491ee314da 283 PIRSF PIRSF000090 1 270 4.2E-93 T 11-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 AMK58_04560 1a4ff4975b67dbf0136bcf491ee314da 283 Gene3D G3DSA:3.40.50.620 1 264 4.9E-87 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_04560 1a4ff4975b67dbf0136bcf491ee314da 283 SMART SM00893 22 218 3.5E-58 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AMK58_04560 1a4ff4975b67dbf0136bcf491ee314da 283 Pfam PF01012 Electron transfer flavoprotein domain 23 190 2.7E-48 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AMK58_04560 1a4ff4975b67dbf0136bcf491ee314da 283 SUPERFAMILY SSF52402 1 245 2.45E-73 T 11-10-2018 AMK58_18960 fe73471c18e2b2c2ce8d98f61943b287 717 Gene3D G3DSA:3.20.20.240 1 563 1.8E-248 T 11-10-2018 AMK58_18960 fe73471c18e2b2c2ce8d98f61943b287 717 Pfam PF01642 Methylmalonyl-CoA mutase 32 544 1.5E-242 T 11-10-2018 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0016866|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 AMK58_18960 fe73471c18e2b2c2ce8d98f61943b287 717 TIGRFAM TIGR00640 acid_CoA_mut_C: methylmalonyl-CoA mutase C-terminal domain 584 714 7.9E-61 T 11-10-2018 IPR006159 Methylmalonyl-CoA mutase, C-terminal GO:0016853 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 AMK58_18960 fe73471c18e2b2c2ce8d98f61943b287 717 Gene3D G3DSA:3.40.50.280 569 717 3.2E-51 T 11-10-2018 AMK58_18960 fe73471c18e2b2c2ce8d98f61943b287 717 ProSitePatterns PS00544 Methylmalonyl-CoA mutase signature. 374 399 - T 11-10-2018 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0016866|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 AMK58_18960 fe73471c18e2b2c2ce8d98f61943b287 717 SUPERFAMILY SSF51703 2 547 1.12E-225 T 11-10-2018 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 AMK58_18960 fe73471c18e2b2c2ce8d98f61943b287 717 SUPERFAMILY SSF52242 551 712 7.85E-60 T 11-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 AMK58_18960 fe73471c18e2b2c2ce8d98f61943b287 717 TIGRFAM TIGR00641 acid_CoA_mut_N: methylmalonyl-CoA mutase N-terminal domain 31 551 1.7E-273 T 11-10-2018 IPR006098 Methylmalonyl-CoA mutase, alpha chain, catalytic GO:0004494|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 AMK58_18960 fe73471c18e2b2c2ce8d98f61943b287 717 Pfam PF02310 B12 binding domain 587 698 8.4E-14 T 11-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 AMK58_16150 8f4b3ea68e3cad30ba9fbd671739b329 302 Pfam PF03466 LysR substrate binding domain 87 290 1.4E-40 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_16150 8f4b3ea68e3cad30ba9fbd671739b329 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.6E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_16150 8f4b3ea68e3cad30ba9fbd671739b329 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.6E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_16150 8f4b3ea68e3cad30ba9fbd671739b329 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.6E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_16150 8f4b3ea68e3cad30ba9fbd671739b329 302 Gene3D G3DSA:3.40.190.290 91 293 4.2E-41 T 11-10-2018 AMK58_16150 8f4b3ea68e3cad30ba9fbd671739b329 302 SUPERFAMILY SSF53850 88 290 1.52E-38 T 11-10-2018 AMK58_16150 8f4b3ea68e3cad30ba9fbd671739b329 302 Gene3D G3DSA:1.10.10.10 1 82 2.9E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_16150 8f4b3ea68e3cad30ba9fbd671739b329 302 SUPERFAMILY SSF46785 1 81 3.64E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_16150 8f4b3ea68e3cad30ba9fbd671739b329 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 61 1.6E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_16735 e519430a614befb0b0943b4ef280da4d 698 Pfam PF01968 Hydantoinase/oxoprolinase 211 500 5.4E-90 T 11-10-2018 IPR002821 Hydantoinase A/oxoprolinase GO:0016787 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 AMK58_16735 e519430a614befb0b0943b4ef280da4d 698 Pfam PF05378 Hydantoinase/oxoprolinase N-terminal region 19 190 2.4E-45 T 11-10-2018 IPR008040 Hydantoinaseoxoprolinase, N-terminal Reactome: R-HSA-174403|Reactome: R-HSA-5578998 AMK58_12480 7032c62fffcbf8ff9640aa50d1e80fab 534 TIGRFAM TIGR01344 malate_syn_A: malate synthase A 21 529 4.1E-249 T 11-10-2018 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AMK58_12480 7032c62fffcbf8ff9640aa50d1e80fab 534 Gene3D G3DSA:3.20.20.360 2 408 5.3E-196 T 11-10-2018 AMK58_12480 7032c62fffcbf8ff9640aa50d1e80fab 534 Gene3D G3DSA:1.20.1220.12 410 529 4.5E-47 T 11-10-2018 AMK58_12480 7032c62fffcbf8ff9640aa50d1e80fab 534 Pfam PF01274 Malate synthase 10 530 1.1E-211 T 11-10-2018 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AMK58_12480 7032c62fffcbf8ff9640aa50d1e80fab 534 PIRSF PIRSF001363 1 531 3.7E-251 T 11-10-2018 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AMK58_12480 7032c62fffcbf8ff9640aa50d1e80fab 534 ProSitePatterns PS00510 Malate synthase signature. 264 279 - T 11-10-2018 IPR019830 Malate synthase, conserved site GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AMK58_12480 7032c62fffcbf8ff9640aa50d1e80fab 534 SUPERFAMILY SSF51645 8 531 2.62E-199 T 11-10-2018 IPR011076 Malate synthase-like superfamily GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AMK58_21795 4e130302a4dfedea398dae3c2f76dad3 228 SUPERFAMILY SSF48695 17 194 1.26E-62 T 11-10-2018 IPR036280 Multiheme cytochrome superfamily AMK58_21795 4e130302a4dfedea398dae3c2f76dad3 228 TIGRFAM TIGR02161 napC_nirT: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family 9 191 2.8E-96 T 11-10-2018 IPR011885 Periplasmic nitrate reductase c-type cytochrome, NapC/NirT GO:0016021|GO:0019333|GO:0020037 AMK58_21795 4e130302a4dfedea398dae3c2f76dad3 228 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 18 191 1.7E-75 T 11-10-2018 IPR005126 NapC/NirT cytochrome c, N-terminal AMK58_21795 4e130302a4dfedea398dae3c2f76dad3 228 Gene3D G3DSA:1.10.3820.10 19 193 6.7E-38 T 11-10-2018 IPR038266 NapC/NirT cytochrome c superfamily AMK58_21795 4e130302a4dfedea398dae3c2f76dad3 228 PIRSF PIRSF000013 1 201 2.9E-107 T 11-10-2018 IPR024717 Denitrification system component NapC/NirT/NrfH GO:0016021|GO:0019333|GO:0020037 AMK58_18620 4a071387e90b871d00ca6749de7d2f00 413 Gene3D G3DSA:1.20.1090.10 193 408 8.3E-50 T 11-10-2018 AMK58_18620 4a071387e90b871d00ca6749de7d2f00 413 Gene3D G3DSA:3.40.50.1970 2 191 3.1E-48 T 11-10-2018 AMK58_18620 4a071387e90b871d00ca6749de7d2f00 413 Pfam PF00465 Iron-containing alcohol dehydrogenase 11 394 7.3E-100 T 11-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 AMK58_18620 4a071387e90b871d00ca6749de7d2f00 413 SUPERFAMILY SSF56796 6 408 4.71E-101 T 11-10-2018 AMK58_28825 7e740ee0453d171c85024e7c92983967 348 Gene3D G3DSA:3.90.25.10 181 314 5.0E-121 T 11-10-2018 AMK58_28825 7e740ee0453d171c85024e7c92983967 348 Gene3D G3DSA:3.40.50.720 11 260 5.0E-121 T 11-10-2018 AMK58_28825 7e740ee0453d171c85024e7c92983967 348 Pfam PF01370 NAD dependent epimerase/dehydratase family 11 260 5.7E-58 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMK58_28825 7e740ee0453d171c85024e7c92983967 348 SUPERFAMILY SSF51735 9 330 6.4E-89 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_28825 7e740ee0453d171c85024e7c92983967 348 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 10 333 2.1E-131 T 11-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 AMK58_05955 3883a5baeffff62e456fa695d2739c9a 389 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMK58_05955 3883a5baeffff62e456fa695d2739c9a 389 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 11 196 0.0036 T 11-10-2018 AMK58_05955 3883a5baeffff62e456fa695d2739c9a 389 Gene3D G3DSA:3.40.50.720 2 267 7.9E-68 T 11-10-2018 AMK58_05955 3883a5baeffff62e456fa695d2739c9a 389 SUPERFAMILY SSF51735 7 268 2.21E-63 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_05955 3883a5baeffff62e456fa695d2739c9a 389 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 8.9E-20 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_05955 3883a5baeffff62e456fa695d2739c9a 389 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 8.9E-20 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_05955 3883a5baeffff62e456fa695d2739c9a 389 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 8.9E-20 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_05955 3883a5baeffff62e456fa695d2739c9a 389 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 8.9E-20 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_05955 3883a5baeffff62e456fa695d2739c9a 389 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 2.2E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_05955 3883a5baeffff62e456fa695d2739c9a 389 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 2.2E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_05955 3883a5baeffff62e456fa695d2739c9a 389 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 2.2E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_05955 3883a5baeffff62e456fa695d2739c9a 389 Pfam PF00106 short chain dehydrogenase 11 195 1.3E-48 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_02830 0694c703b4146b6a11f0215a2a08a999 170 SUPERFAMILY SSF46689 22 139 5.73E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_02830 0694c703b4146b6a11f0215a2a08a999 170 Pfam PF13592 Winged helix-turn helix 111 164 4.3E-16 T 11-10-2018 IPR025959 Winged helix-turn helix domain AMK58_02830 0694c703b4146b6a11f0215a2a08a999 170 Pfam PF13551 Winged helix-turn helix 31 91 1.2E-11 T 11-10-2018 AMK58_14460 2e45203a5f474cbc35fd552088f4f742 638 Gene3D G3DSA:3.40.50.11350 500 625 5.4E-6 T 11-10-2018 AMK58_14460 2e45203a5f474cbc35fd552088f4f742 638 Gene3D G3DSA:1.25.40.10 5 340 2.9E-51 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_14460 2e45203a5f474cbc35fd552088f4f742 638 Pfam PF13432 Tetratricopeptide repeat 16 69 3.3E-6 T 11-10-2018 AMK58_14460 2e45203a5f474cbc35fd552088f4f742 638 Pfam PF13432 Tetratricopeptide repeat 125 171 0.0012 T 11-10-2018 AMK58_14460 2e45203a5f474cbc35fd552088f4f742 638 SUPERFAMILY SSF48452 11 236 8.34E-33 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_14460 2e45203a5f474cbc35fd552088f4f742 638 SMART SM00028 176 209 15.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14460 2e45203a5f474cbc35fd552088f4f742 638 SMART SM00028 38 71 190.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14460 2e45203a5f474cbc35fd552088f4f742 638 SMART SM00028 142 175 0.37 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14460 2e45203a5f474cbc35fd552088f4f742 638 SMART SM00028 72 105 22.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14460 2e45203a5f474cbc35fd552088f4f742 638 SMART SM00028 210 243 12.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14460 2e45203a5f474cbc35fd552088f4f742 638 SMART SM00028 4 37 290.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14460 2e45203a5f474cbc35fd552088f4f742 638 SMART SM00028 106 141 3.8 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_14460 2e45203a5f474cbc35fd552088f4f742 638 Pfam PF13414 TPR repeat 184 224 3.1E-7 T 11-10-2018 AMK58_16190 69c4af75ba51830376302fe5cc4842cf 482 Pfam PF03972 MmgE/PrpD family 7 442 4.5E-68 T 11-10-2018 IPR005656 MmgE/PrpD GO:0016829 AMK58_16190 69c4af75ba51830376302fe5cc4842cf 482 Gene3D G3DSA:1.10.4100.10 25 439 1.1E-69 T 11-10-2018 AMK58_16190 69c4af75ba51830376302fe5cc4842cf 482 Gene3D G3DSA:3.30.1330.120 282 420 1.1E-69 T 11-10-2018 AMK58_16190 69c4af75ba51830376302fe5cc4842cf 482 SUPERFAMILY SSF103378 5 460 2.62E-69 T 11-10-2018 IPR036148 MmgE/PrpD superfamily GO:0016829 AMK58_16655 11e1d2f575700d9d1f59ed5e3e59ad82 108 Pfam PF06844 Protein of unknown function (DUF1244) 27 92 1.4E-37 T 11-10-2018 IPR023163 SMc04008-like domain AMK58_16655 11e1d2f575700d9d1f59ed5e3e59ad82 108 Gene3D G3DSA:1.10.3340.10 1 100 2.8E-47 T 11-10-2018 IPR036810 SMc04008-like superfamily AMK58_16655 11e1d2f575700d9d1f59ed5e3e59ad82 108 SUPERFAMILY SSF158757 1 77 4.05E-37 T 11-10-2018 IPR036810 SMc04008-like superfamily AMK58_24165 5093f940675fee981e805258b89ba509 255 Gene3D G3DSA:3.40.50.1110 67 240 4.7E-15 T 11-10-2018 IPR036514 SGNH hydrolase superfamily AMK58_24165 5093f940675fee981e805258b89ba509 255 SUPERFAMILY SSF52266 74 219 3.4E-14 T 11-10-2018 AMK58_02770 988fc77974e49ca289c31b6182330d41 111 SUPERFAMILY SSF50022 7 68 6.81E-10 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMK58_02770 988fc77974e49ca289c31b6182330d41 111 Pfam PF00355 Rieske [2Fe-2S] domain 5 67 9.9E-8 T 11-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMK58_02770 988fc77974e49ca289c31b6182330d41 111 Gene3D G3DSA:2.102.10.10 1 73 6.8E-8 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMK58_15440 614a830def0f0ce687a2b31944b78042 299 Pfam PF01882 Protein of unknown function DUF58 51 138 2.2E-17 T 11-10-2018 IPR002881 Domain of unknown function DUF58 AMK58_14455 39b1fb753dc722e8a4c41cb0f75b27f1 358 Pfam PF04055 Radical SAM superfamily 71 248 3.5E-14 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMK58_14455 39b1fb753dc722e8a4c41cb0f75b27f1 358 SMART SM00729 67 295 6.5E-5 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMK58_14455 39b1fb753dc722e8a4c41cb0f75b27f1 358 SUPERFAMILY SSF102114 54 265 2.62E-13 T 11-10-2018 AMK58_14455 39b1fb753dc722e8a4c41cb0f75b27f1 358 Gene3D G3DSA:3.20.20.70 69 346 3.4E-6 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_27900 1aebad79e772fcd8d0e95f34f5049a46 342 Pfam PF01032 FecCD transport family 17 338 1.1E-93 T 11-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 AMK58_27900 1aebad79e772fcd8d0e95f34f5049a46 342 SUPERFAMILY SSF81345 4 339 1.7E-81 T 11-10-2018 IPR037294 ABC transporter, BtuC-like AMK58_27900 1aebad79e772fcd8d0e95f34f5049a46 342 Gene3D G3DSA:1.10.3470.10 3 341 1.9E-100 T 11-10-2018 IPR037294 ABC transporter, BtuC-like AMK58_12415 0ecce848988edde9c9a38205d1a5f6d2 44 Pfam PF00468 Ribosomal protein L34 2 44 2.1E-23 T 11-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_12415 0ecce848988edde9c9a38205d1a5f6d2 44 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 15.026 T 11-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_12415 0ecce848988edde9c9a38205d1a5f6d2 44 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 2 39 3.0E-11 T 11-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_12415 0ecce848988edde9c9a38205d1a5f6d2 44 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 2 44 5.4E-23 T 11-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_12415 0ecce848988edde9c9a38205d1a5f6d2 44 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 11-10-2018 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_15720 682ad7d7eb7847dd0c9ab5423ea3e057 382 Pfam PF02803 Thiolase, C-terminal domain 249 368 1.4E-5 T 11-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 AMK58_15720 682ad7d7eb7847dd0c9ab5423ea3e057 382 PIRSF PIRSF000429 1 379 8.8E-32 T 11-10-2018 IPR002155 Thiolase GO:0016747 AMK58_15720 682ad7d7eb7847dd0c9ab5423ea3e057 382 Gene3D G3DSA:3.40.47.10 2 382 9.2E-107 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_15720 682ad7d7eb7847dd0c9ab5423ea3e057 382 SUPERFAMILY SSF53901 22 352 1.53E-27 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_12855 13f7ec3add30a19898435a918987dc48 412 Hamap MF_01106 Arginine biosynthesis bifunctional protein ArgJ [argJ]. 1 412 147.971 T 11-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 AMK58_12855 13f7ec3add30a19898435a918987dc48 412 TIGRFAM TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase 19 412 5.2E-115 T 11-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 AMK58_12855 13f7ec3add30a19898435a918987dc48 412 Gene3D G3DSA:3.10.20.340 284 412 1.0E-41 T 11-10-2018 AMK58_12855 13f7ec3add30a19898435a918987dc48 412 ProDom PD004193 ACETYLTRANSFERASE ORNITHINE ARGININE BIOSYNTHESIS ARGJ GLUTAMATE N-ACETYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIFUNCTIONAL 27 410 6.0E-107 T 11-10-2018 AMK58_12855 13f7ec3add30a19898435a918987dc48 412 SUPERFAMILY SSF56266 19 408 1.31E-132 T 11-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 AMK58_12855 13f7ec3add30a19898435a918987dc48 412 Pfam PF01960 ArgJ family 24 412 1.1E-136 T 11-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 AMK58_12855 13f7ec3add30a19898435a918987dc48 412 Gene3D G3DSA:3.60.70.12 15 283 1.8E-86 T 11-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 AMK58_09260 6a22e8f99a6f36481c65439d2a80fca1 160 Gene3D G3DSA:3.30.420.270 70 139 1.0E-21 T 11-10-2018 AMK58_09260 6a22e8f99a6f36481c65439d2a80fca1 160 TIGRFAM TIGR02801 tolR: protein TolR 22 142 1.3E-37 T 11-10-2018 IPR014168 Tol-Pal system protein TolR GO:0015031|GO:0016021 AMK58_09260 6a22e8f99a6f36481c65439d2a80fca1 160 Pfam PF02472 Biopolymer transport protein ExbD/TolR 21 141 7.8E-28 T 11-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 AMK58_13000 2eaa90cd53c0eb185247c2bac5ecb343 303 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 33 79 2.3E-15 T 11-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AMK58_13000 2eaa90cd53c0eb185247c2bac5ecb343 303 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 120 301 1.9E-29 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_13000 2eaa90cd53c0eb185247c2bac5ecb343 303 Gene3D G3DSA:1.10.3720.10 91 299 1.0E-18 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_13000 2eaa90cd53c0eb185247c2bac5ecb343 303 SUPERFAMILY SSF161098 97 284 3.53E-26 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_06725 2c9899bd5c05f5263be1efe7b7b1ae02 350 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 9 145 1.2E-28 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AMK58_06725 2c9899bd5c05f5263be1efe7b7b1ae02 350 Gene3D G3DSA:3.40.50.720 9 336 5.2E-136 T 11-10-2018 AMK58_06725 2c9899bd5c05f5263be1efe7b7b1ae02 350 SMART SM00859 9 146 3.1E-54 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AMK58_06725 2c9899bd5c05f5263be1efe7b7b1ae02 350 Gene3D G3DSA:3.30.360.10 152 318 5.2E-136 T 11-10-2018 AMK58_06725 2c9899bd5c05f5263be1efe7b7b1ae02 350 SUPERFAMILY SSF55347 154 318 8.92E-54 T 11-10-2018 AMK58_06725 2c9899bd5c05f5263be1efe7b7b1ae02 350 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 149 165 - T 11-10-2018 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMK58_06725 2c9899bd5c05f5263be1efe7b7b1ae02 350 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 8 344 41.51 T 11-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMK58_06725 2c9899bd5c05f5263be1efe7b7b1ae02 350 SUPERFAMILY SSF51735 6 172 2.36E-53 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_06725 2c9899bd5c05f5263be1efe7b7b1ae02 350 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 8 350 5.0E-130 T 11-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMK58_06725 2c9899bd5c05f5263be1efe7b7b1ae02 350 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 164 321 1.3E-18 T 11-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMK58_04270 360484982c05fd3bc65037ab4ff68746 253 SUPERFAMILY SSF56235 2 231 2.79E-21 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMK58_04270 360484982c05fd3bc65037ab4ff68746 253 Gene3D G3DSA:3.60.20.10 2 226 1.8E-17 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMK58_04270 360484982c05fd3bc65037ab4ff68746 253 PIRSF PIRSF009120 1 243 5.9E-58 T 11-10-2018 IPR016545 Uncharacterised conserved protein UCP009120, proteasome-type protease, Sll0069 AMK58_04270 360484982c05fd3bc65037ab4ff68746 253 Pfam PF00227 Proteasome subunit 4 179 1.6E-7 T 11-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 AMK58_25660 5750c2642656f36690d3aed5098f5ee3 217 Gene3D G3DSA:1.10.150.240 25 94 1.5E-21 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 AMK58_25660 5750c2642656f36690d3aed5098f5ee3 217 Gene3D G3DSA:3.40.50.1000 13 192 1.5E-21 T 11-10-2018 IPR023214 HAD superfamily AMK58_25660 5750c2642656f36690d3aed5098f5ee3 217 Pfam PF13419 Haloacid dehalogenase-like hydrolase 13 191 2.6E-14 T 11-10-2018 AMK58_25660 5750c2642656f36690d3aed5098f5ee3 217 SUPERFAMILY SSF56784 11 214 3.77E-28 T 11-10-2018 IPR036412 HAD-like superfamily AMK58_12805 dbbcf798aefa6b63b38215e96c6664ac 88 Pfam PF01313 Bacterial export proteins, family 3 6 77 1.3E-17 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 AMK58_12805 dbbcf798aefa6b63b38215e96c6664ac 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 1.4E-10 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 AMK58_12805 dbbcf798aefa6b63b38215e96c6664ac 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 1.4E-10 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 AMK58_12805 dbbcf798aefa6b63b38215e96c6664ac 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 1.4E-10 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 AMK58_26680 8b79e8bc009e800fc968d36e68f22e16 394 Pfam PF07958 Protein of unknown function (DUF1688) 4 394 5.1E-139 T 11-10-2018 IPR012469 Protein of unknown function DUF1688 AMK58_25765 31b2d217ce7902892bd05b0a07f8c5e4 125 SUPERFAMILY SSF55298 4 125 3.14E-41 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMK58_25765 31b2d217ce7902892bd05b0a07f8c5e4 125 Gene3D G3DSA:3.30.1330.40 1 125 1.3E-47 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMK58_25765 31b2d217ce7902892bd05b0a07f8c5e4 125 Pfam PF01042 Endoribonuclease L-PSP 8 124 5.1E-37 T 11-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 AMK58_25765 31b2d217ce7902892bd05b0a07f8c5e4 125 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 101 119 - T 11-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 AMK58_25765 31b2d217ce7902892bd05b0a07f8c5e4 125 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 3 123 2.1E-46 T 11-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 AMK58_14630 699635c45d8c6793f674eef3f9836ce6 437 Pfam PF03471 Transporter associated domain 350 427 2.1E-23 T 11-10-2018 IPR005170 Transporter-associated domain AMK58_14630 699635c45d8c6793f674eef3f9836ce6 437 Gene3D G3DSA:3.30.465.10 348 430 1.4E-34 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AMK58_14630 699635c45d8c6793f674eef3f9836ce6 437 Pfam PF01595 Domain of unknown function DUF21 6 200 6.7E-49 T 11-10-2018 IPR002550 CNNM, transmembrane domain AMK58_14630 699635c45d8c6793f674eef3f9836ce6 437 SMART SM00116 224 273 16.0 T 11-10-2018 IPR000644 CBS domain AMK58_14630 699635c45d8c6793f674eef3f9836ce6 437 SMART SM00116 286 334 0.0014 T 11-10-2018 IPR000644 CBS domain AMK58_14630 699635c45d8c6793f674eef3f9836ce6 437 Pfam PF00571 CBS domain 286 334 1.1E-6 T 11-10-2018 IPR000644 CBS domain AMK58_14630 699635c45d8c6793f674eef3f9836ce6 437 Pfam PF00571 CBS domain 216 270 0.0061 T 11-10-2018 IPR000644 CBS domain AMK58_14630 699635c45d8c6793f674eef3f9836ce6 437 Gene3D G3DSA:3.10.580.10 196 347 4.2E-44 T 11-10-2018 AMK58_14630 699635c45d8c6793f674eef3f9836ce6 437 SUPERFAMILY SSF56176 348 432 3.82E-24 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMK58_14630 699635c45d8c6793f674eef3f9836ce6 437 SMART SM01091 349 429 4.8E-31 T 11-10-2018 IPR005170 Transporter-associated domain AMK58_14630 699635c45d8c6793f674eef3f9836ce6 437 SUPERFAMILY SSF54631 202 337 1.05E-30 T 11-10-2018 AMK58_17170 4802b6987323d6104d8e1bdd5adc5487 171 Gene3D G3DSA:1.20.1260.10 89 169 3.6E-11 T 11-10-2018 IPR012347 Ferritin-like AMK58_17170 4802b6987323d6104d8e1bdd5adc5487 171 Pfam PF03713 Domain of unknown function (DUF305) 92 153 1.1E-10 T 11-10-2018 IPR005183 Domain of unknown function DUF305 AMK58_06340 32b1420c68a30c2b9c187868db355ec0 202 Pfam PF00043 Glutathione S-transferase, C-terminal domain 131 192 1.3E-11 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal AMK58_06340 32b1420c68a30c2b9c187868db355ec0 202 Gene3D G3DSA:3.40.30.10 1 81 3.0E-24 T 11-10-2018 AMK58_06340 32b1420c68a30c2b9c187868db355ec0 202 SUPERFAMILY SSF52833 1 79 2.24E-21 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_06340 32b1420c68a30c2b9c187868db355ec0 202 Pfam PF02798 Glutathione S-transferase, N-terminal domain 2 76 4.8E-15 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMK58_06340 32b1420c68a30c2b9c187868db355ec0 202 Gene3D G3DSA:1.20.1050.10 82 197 7.7E-39 T 11-10-2018 AMK58_06340 32b1420c68a30c2b9c187868db355ec0 202 SUPERFAMILY SSF47616 77 192 1.64E-28 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMK58_27595 82e5d6abc58e91ed4d9a1b5c94cb0789 427 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 422 9.8E-119 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 AMK58_27595 82e5d6abc58e91ed4d9a1b5c94cb0789 427 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 8 416 8.0E-100 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit AMK58_27595 82e5d6abc58e91ed4d9a1b5c94cb0789 427 PIRSF PIRSF006066 1 427 4.5E-137 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 AMK58_26250 64711ab860c9634acc58cef3ff3c5f93 88 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 1 81 1.3E-26 T 11-10-2018 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 AMK58_26250 64711ab860c9634acc58cef3ff3c5f93 88 PIRSF PIRSF004669 1 88 1.5E-26 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 AMK58_26250 64711ab860c9634acc58cef3ff3c5f93 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 2.1E-20 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 AMK58_26250 64711ab860c9634acc58cef3ff3c5f93 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 2.1E-20 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 AMK58_26250 64711ab860c9634acc58cef3ff3c5f93 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 2.1E-20 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 AMK58_26250 64711ab860c9634acc58cef3ff3c5f93 88 Pfam PF01313 Bacterial export proteins, family 3 6 77 8.8E-27 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 AMK58_07060 2a8fcbfc26ac1d371178a7e1de531e0e 100 ProDom PD002319 SUBUNIT GAMMA HYDROLASE UREASE UREA AMIDOHYDROLASE UREASE ALPHA GAMMA/BETA METAL-BINDING 25 99 4.0E-33 T 11-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMK58_07060 2a8fcbfc26ac1d371178a7e1de531e0e 100 SUPERFAMILY SSF54111 1 100 6.02E-46 T 11-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMK58_07060 2a8fcbfc26ac1d371178a7e1de531e0e 100 Pfam PF00547 Urease, gamma subunit 1 99 1.1E-47 T 11-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMK58_07060 2a8fcbfc26ac1d371178a7e1de531e0e 100 PIRSF PIRSF001223 1 100 2.0E-51 T 11-10-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMK58_07060 2a8fcbfc26ac1d371178a7e1de531e0e 100 Gene3D G3DSA:3.30.280.10 1 100 3.7E-48 T 11-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMK58_07060 2a8fcbfc26ac1d371178a7e1de531e0e 100 Hamap MF_00739 Urease subunit gamma [ureA]. 1 100 34.78 T 11-10-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMK58_07060 2a8fcbfc26ac1d371178a7e1de531e0e 100 TIGRFAM TIGR00193 urease_gam: urease, gamma subunit 1 100 1.8E-48 T 11-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMK58_23065 2f73336f7c7d20f30b379d77e1cdd65a 178 SUPERFAMILY SSF46785 28 170 2.46E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_23065 2f73336f7c7d20f30b379d77e1cdd65a 178 Pfam PF13463 Winged helix DNA-binding domain 61 124 2.0E-11 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_23065 2f73336f7c7d20f30b379d77e1cdd65a 178 SMART SM00347 52 151 9.2E-4 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_23065 2f73336f7c7d20f30b379d77e1cdd65a 178 ProSitePatterns PS01117 MarR-type HTH domain signature. 90 124 - T 11-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site AMK58_23065 2f73336f7c7d20f30b379d77e1cdd65a 178 Gene3D G3DSA:1.10.10.10 3 166 9.7E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_07370 3776919e83906a46233155d061733272 318 Pfam PF09991 Predicted membrane protein (DUF2232) 19 295 1.8E-11 T 11-10-2018 IPR018710 Protein of unknown function DUF2232 AMK58_14615 59121b503d9cf0d58d730940310e8413 369 Pfam PF02607 B12 binding domain 152 224 1.8E-14 T 11-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMK58_14615 59121b503d9cf0d58d730940310e8413 369 Gene3D G3DSA:3.40.50.280 230 358 6.8E-34 T 11-10-2018 AMK58_14615 59121b503d9cf0d58d730940310e8413 369 SUPERFAMILY SSF52242 218 359 1.06E-28 T 11-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 AMK58_14615 59121b503d9cf0d58d730940310e8413 369 SUPERFAMILY SSF46458 17 119 3.01E-5 T 11-10-2018 IPR009050 Globin-like superfamily AMK58_14615 59121b503d9cf0d58d730940310e8413 369 Gene3D G3DSA:1.10.1240.10 150 226 1.4E-17 T 11-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMK58_14615 59121b503d9cf0d58d730940310e8413 369 Pfam PF02310 B12 binding domain 238 350 9.4E-20 T 11-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 AMK58_07485 7bf399b0d9d002259cdede2903b807d2 295 Pfam PF02653 Branched-chain amino acid transport system / permease component 17 283 1.9E-39 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_10130 bad7549524336f9922bf7747e4d3cfbc 173 Pfam PF03748 Flagellar basal body-associated protein FliL 76 173 8.8E-18 T 11-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 AMK58_18800 138a4a820ca5b3812af137067d65c631 199 Gene3D G3DSA:1.10.530.10 40 172 3.0E-9 T 11-10-2018 AMK58_18800 138a4a820ca5b3812af137067d65c631 199 SUPERFAMILY SSF53955 43 162 4.64E-18 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily AMK58_18800 138a4a820ca5b3812af137067d65c631 199 Pfam PF01464 Transglycosylase SLT domain 48 163 8.3E-6 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 AMK58_14925 b6c88432bb2ea3ca6df9c484abd459e9 254 Gene3D G3DSA:3.40.1010.10 1 116 6.0E-24 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 AMK58_14925 b6c88432bb2ea3ca6df9c484abd459e9 254 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 7 214 1.6E-32 T 11-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 AMK58_14925 b6c88432bb2ea3ca6df9c484abd459e9 254 TIGRFAM TIGR01466 cobJ_cbiH: precorrin-3B C17-methyltransferase 5 251 5.0E-88 T 11-10-2018 IPR006363 Precorrin-3B C17-methyltransferase domain GO:0008168|GO:0009236 AMK58_14925 b6c88432bb2ea3ca6df9c484abd459e9 254 SUPERFAMILY SSF53790 1 252 9.68E-53 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 AMK58_14925 b6c88432bb2ea3ca6df9c484abd459e9 254 Gene3D G3DSA:3.30.950.10 117 252 3.1E-54 T 11-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 AMK58_00220 51d11b54ddc5bfaa82430b6360f61fff 151 SUPERFAMILY SSF51206 8 142 7.46E-34 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like AMK58_00220 51d11b54ddc5bfaa82430b6360f61fff 151 PRINTS PR00103 cAMP-dependent protein kinase signature 51 65 2.0E-5 T 11-10-2018 AMK58_00220 51d11b54ddc5bfaa82430b6360f61fff 151 PRINTS PR00103 cAMP-dependent protein kinase signature 92 103 2.0E-5 T 11-10-2018 AMK58_00220 51d11b54ddc5bfaa82430b6360f61fff 151 PRINTS PR00103 cAMP-dependent protein kinase signature 36 50 2.0E-5 T 11-10-2018 AMK58_00220 51d11b54ddc5bfaa82430b6360f61fff 151 PRINTS PR00103 cAMP-dependent protein kinase signature 80 89 2.0E-5 T 11-10-2018 AMK58_00220 51d11b54ddc5bfaa82430b6360f61fff 151 Pfam PF00027 Cyclic nucleotide-binding domain 34 118 4.2E-21 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_00220 51d11b54ddc5bfaa82430b6360f61fff 151 SMART SM00100 15 132 1.7E-21 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMK58_00220 51d11b54ddc5bfaa82430b6360f61fff 151 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 82 99 - T 11-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site AMK58_00220 51d11b54ddc5bfaa82430b6360f61fff 151 Gene3D G3DSA:2.60.120.10 1 147 6.4E-36 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_04070 72978a5b0c366dea3e96a2e7725af7cd 75 SUPERFAMILY SSF143100 14 67 1.96E-14 T 11-10-2018 IPR035069 TTHA1013/TTHA0281-like AMK58_04070 72978a5b0c366dea3e96a2e7725af7cd 75 Pfam PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system 6 68 7.2E-9 T 11-10-2018 IPR031807 HicB-like antitoxin of toxin-antitoxin system AMK58_04070 72978a5b0c366dea3e96a2e7725af7cd 75 Gene3D G3DSA:3.30.160.250 5 75 1.3E-15 T 11-10-2018 AMK58_21755 45aa67ec4748533c6b79d00c171d6729 668 TIGRFAM TIGR02843 CyoB: cytochrome o ubiquinol oxidase, subunit I 13 657 0.0 T 11-10-2018 IPR014207 Cytochrome o ubiquinol oxidase, subunit I GO:0016682|GO:0055114 MetaCyc: PWY-7544 AMK58_21755 45aa67ec4748533c6b79d00c171d6729 668 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 291 345 - T 11-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_21755 45aa67ec4748533c6b79d00c171d6729 668 Gene3D G3DSA:1.20.210.10 28 577 2.7E-189 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_21755 45aa67ec4748533c6b79d00c171d6729 668 PRINTS PR01165 Cytochrome c oxidase subunit I signature 472 493 4.7E-91 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_21755 45aa67ec4748533c6b79d00c171d6729 668 PRINTS PR01165 Cytochrome c oxidase subunit I signature 58 83 4.7E-91 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_21755 45aa67ec4748533c6b79d00c171d6729 668 PRINTS PR01165 Cytochrome c oxidase subunit I signature 394 412 4.7E-91 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_21755 45aa67ec4748533c6b79d00c171d6729 668 PRINTS PR01165 Cytochrome c oxidase subunit I signature 289 310 4.7E-91 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_21755 45aa67ec4748533c6b79d00c171d6729 668 PRINTS PR01165 Cytochrome c oxidase subunit I signature 422 441 4.7E-91 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_21755 45aa67ec4748533c6b79d00c171d6729 668 PRINTS PR01165 Cytochrome c oxidase subunit I signature 238 257 4.7E-91 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_21755 45aa67ec4748533c6b79d00c171d6729 668 PRINTS PR01165 Cytochrome c oxidase subunit I signature 177 189 4.7E-91 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_21755 45aa67ec4748533c6b79d00c171d6729 668 PRINTS PR01165 Cytochrome c oxidase subunit I signature 359 380 4.7E-91 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_21755 45aa67ec4748533c6b79d00c171d6729 668 PRINTS PR01165 Cytochrome c oxidase subunit I signature 135 159 4.7E-91 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_21755 45aa67ec4748533c6b79d00c171d6729 668 PRINTS PR01165 Cytochrome c oxidase subunit I signature 209 227 4.7E-91 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_21755 45aa67ec4748533c6b79d00c171d6729 668 PRINTS PR01165 Cytochrome c oxidase subunit I signature 108 131 4.7E-91 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_21755 45aa67ec4748533c6b79d00c171d6729 668 PRINTS PR01165 Cytochrome c oxidase subunit I signature 335 350 4.7E-91 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_21755 45aa67ec4748533c6b79d00c171d6729 668 SUPERFAMILY SSF81442 54 571 2.22E-177 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_21755 45aa67ec4748533c6b79d00c171d6729 668 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 67 515 5.7E-138 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_11845 aa4b53fa34294775db8bd54e9e0a3a71 207 Gene3D G3DSA:3.40.50.300 4 207 2.6E-36 T 11-10-2018 AMK58_11845 aa4b53fa34294775db8bd54e9e0a3a71 207 PIRSF PIRSF009320 1 206 6.6E-24 T 11-10-2018 AMK58_11845 aa4b53fa34294775db8bd54e9e0a3a71 207 SUPERFAMILY SSF52540 1 204 7.77E-30 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_11845 aa4b53fa34294775db8bd54e9e0a3a71 207 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 4 179 1.5E-12 T 11-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain AMK58_11465 37fd496ccf184ed92173eb6b818dbd3c 330 SUPERFAMILY SSF103481 204 297 1.83E-6 T 11-10-2018 AMK58_11465 37fd496ccf184ed92173eb6b818dbd3c 330 Pfam PF00892 EamA-like transporter family 21 157 6.0E-9 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_11465 37fd496ccf184ed92173eb6b818dbd3c 330 SUPERFAMILY SSF103481 61 159 1.83E-10 T 11-10-2018 AMK58_11465 37fd496ccf184ed92173eb6b818dbd3c 330 TIGRFAM TIGR00688 rarD: protein RarD 24 273 5.3E-64 T 11-10-2018 IPR004626 RarD protein GO:0005887 AMK58_06145 4c834da98c455541ef6606e6cc6dca1b 336 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 11 331 25.958 T 11-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06145 4c834da98c455541ef6606e6cc6dca1b 336 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 212 225 - T 11-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06145 4c834da98c455541ef6606e6cc6dca1b 336 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 57 72 - T 11-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06145 4c834da98c455541ef6606e6cc6dca1b 336 Pfam PF00146 NADH dehydrogenase 18 325 5.4E-133 T 11-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_18075 f423125e76a59896ff038dbd97262ae5 124 SMART SM00448 2 117 1.0E-15 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_18075 f423125e76a59896ff038dbd97262ae5 124 Gene3D G3DSA:3.40.50.2300 2 123 1.9E-25 T 11-10-2018 AMK58_18075 f423125e76a59896ff038dbd97262ae5 124 SUPERFAMILY SSF52172 2 121 1.05E-26 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_18075 f423125e76a59896ff038dbd97262ae5 124 Pfam PF00072 Response regulator receiver domain 4 116 3.3E-21 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_04715 1e3cfff095f4c4e56afb04ce98f96152 383 Gene3D G3DSA:3.40.640.10 59 235 8.1E-135 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_04715 1e3cfff095f4c4e56afb04ce98f96152 383 Gene3D G3DSA:3.90.1150.10 2 373 8.1E-135 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_04715 1e3cfff095f4c4e56afb04ce98f96152 383 PIRSF PIRSF005572 1 383 6.4E-123 T 11-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 AMK58_04715 1e3cfff095f4c4e56afb04ce98f96152 383 SUPERFAMILY SSF53383 1 377 2.13E-96 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_04715 1e3cfff095f4c4e56afb04ce98f96152 383 Gene3D G3DSA:1.10.260.50 13 278 8.1E-135 T 11-10-2018 AMK58_04715 1e3cfff095f4c4e56afb04ce98f96152 383 Pfam PF00266 Aminotransferase class-V 2 369 5.3E-70 T 11-10-2018 IPR000192 Aminotransferase class V domain AMK58_23075 5010b66a7804b9a5a3938695335ba4aa 188 Gene3D G3DSA:1.10.357.10 2 183 4.9E-20 T 11-10-2018 AMK58_23075 5010b66a7804b9a5a3938695335ba4aa 188 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 2.2E-5 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_23075 5010b66a7804b9a5a3938695335ba4aa 188 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 2.2E-5 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_23075 5010b66a7804b9a5a3938695335ba4aa 188 SUPERFAMILY SSF46689 5 68 4.93E-12 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_23075 5010b66a7804b9a5a3938695335ba4aa 188 SUPERFAMILY SSF48498 85 166 8.49E-5 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMK58_23075 5010b66a7804b9a5a3938695335ba4aa 188 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 57 1.9E-11 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_03450 b033bde46fc1471873d8025e7558fb9d 135 SUPERFAMILY SSF46785 11 101 2.36E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_03450 b033bde46fc1471873d8025e7558fb9d 135 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 21 82 4.0E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_03450 b033bde46fc1471873d8025e7558fb9d 135 Gene3D G3DSA:1.10.10.10 1 126 1.3E-36 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_02470 d969edc1d6ae7a007d35109a7dcfd10d 419 SUPERFAMILY SSF102114 115 358 5.23E-56 T 11-10-2018 AMK58_02470 d969edc1d6ae7a007d35109a7dcfd10d 419 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 11 409 2.0E-103 T 11-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 AMK58_02470 d969edc1d6ae7a007d35109a7dcfd10d 419 Pfam PF00919 Uncharacterized protein family UPF0004 11 95 3.3E-17 T 11-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 AMK58_02470 d969edc1d6ae7a007d35109a7dcfd10d 419 Gene3D G3DSA:3.80.30.20 133 367 2.1E-71 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe AMK58_02470 d969edc1d6ae7a007d35109a7dcfd10d 419 Pfam PF04055 Radical SAM superfamily 141 313 1.2E-22 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMK58_02470 d969edc1d6ae7a007d35109a7dcfd10d 419 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 140 160 - T 11-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 AMK58_02470 d969edc1d6ae7a007d35109a7dcfd10d 419 Gene3D G3DSA:3.40.50.12160 9 112 1.7E-17 T 11-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily AMK58_02470 d969edc1d6ae7a007d35109a7dcfd10d 419 SMART SM00729 136 354 4.1E-54 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMK58_02470 d969edc1d6ae7a007d35109a7dcfd10d 419 TIGRFAM TIGR01579 MiaB-like-C: MiaB-like tRNA modifying enzyme 11 389 2.4E-130 T 11-10-2018 IPR006467 MiaB-like tRNA modifying enzyme GO:0016740 AMK58_11165 8e63f3142191bb6913a1b02708b9563f 135 SUPERFAMILY SSF54637 5 133 4.43E-32 T 11-10-2018 IPR029069 HotDog domain superfamily AMK58_11165 8e63f3142191bb6913a1b02708b9563f 135 PIRSF PIRSF003230 1 133 3.5E-20 T 11-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 AMK58_11165 8e63f3142191bb6913a1b02708b9563f 135 Gene3D G3DSA:3.10.129.10 4 135 2.8E-28 T 11-10-2018 AMK58_11165 8e63f3142191bb6913a1b02708b9563f 135 Pfam PF13279 Thioesterase-like superfamily 13 126 4.7E-12 T 11-10-2018 AMK58_12190 4d435f8985decdae4513753235d5f46a 125 Gene3D G3DSA:3.30.720.120 1 54 5.1E-25 T 11-10-2018 AMK58_12190 4d435f8985decdae4513753235d5f46a 125 SUPERFAMILY SSF54593 7 124 1.24E-20 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMK58_12190 4d435f8985decdae4513753235d5f46a 125 PIRSF PIRSF039020 1 124 1.7E-45 T 11-10-2018 IPR026275 Glyoxalase/dioxygenase/EhpR AMK58_12190 4d435f8985decdae4513753235d5f46a 125 Gene3D G3DSA:3.30.720.110 68 122 1.8E-26 T 11-10-2018 AMK58_12190 4d435f8985decdae4513753235d5f46a 125 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 117 1.4E-5 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMK58_06650 8122e3f94085830ddb53a2873b329b70 152 SUPERFAMILY SSF51182 25 138 8.48E-26 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily AMK58_06650 8122e3f94085830ddb53a2873b329b70 152 Gene3D G3DSA:2.60.120.10 3 152 3.5E-49 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_06650 8122e3f94085830ddb53a2873b329b70 152 Pfam PF07883 Cupin domain 48 119 1.1E-19 T 11-10-2018 IPR013096 Cupin 2, conserved barrel AMK58_19140 8d88a6268946e52f49e432db4619cede 318 SUPERFAMILY SSF46785 6 91 7.63E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_19140 8d88a6268946e52f49e432db4619cede 318 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 4.7E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_19140 8d88a6268946e52f49e432db4619cede 318 Gene3D G3DSA:3.40.190.10 165 269 4.1E-66 T 11-10-2018 AMK58_19140 8d88a6268946e52f49e432db4619cede 318 Gene3D G3DSA:3.40.190.10 96 292 4.1E-66 T 11-10-2018 AMK58_19140 8d88a6268946e52f49e432db4619cede 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 6.8E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_19140 8d88a6268946e52f49e432db4619cede 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 6.8E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_19140 8d88a6268946e52f49e432db4619cede 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 6.8E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_19140 8d88a6268946e52f49e432db4619cede 318 SUPERFAMILY SSF53850 92 300 3.41E-42 T 11-10-2018 AMK58_19140 8d88a6268946e52f49e432db4619cede 318 Pfam PF03466 LysR substrate binding domain 93 298 7.4E-48 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_19140 8d88a6268946e52f49e432db4619cede 318 Gene3D G3DSA:1.10.10.10 4 88 2.0E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_26145 7feed94c603468123064c663d05e6045 315 Gene3D G3DSA:3.90.420.10 61 315 1.0E-109 T 11-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 AMK58_26145 7feed94c603468123064c663d05e6045 315 Pfam PF00174 Oxidoreductase molybdopterin binding domain 100 253 3.3E-33 T 11-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 AMK58_26145 7feed94c603468123064c663d05e6045 315 SUPERFAMILY SSF56524 67 311 3.4E-93 T 11-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 AMK58_26145 7feed94c603468123064c663d05e6045 315 Hamap MF_01206 Protein-methionine-sulfoxide reductase catalytic subunit MsrP [msrP]. 9 315 56.609 T 11-10-2018 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP GO:0016667|GO:0030091|GO:0043546|GO:0055114 AMK58_12600 4aecde6c840ac7909da33f24edc0d35d 129 Pfam PF06305 Lipopolysaccharide assembly protein A domain 23 86 1.7E-11 T 11-10-2018 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 AMK58_00940 b9fcf76e0e259b5a20dc76d128bf4333 294 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 121 281 1.6E-14 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_00940 b9fcf76e0e259b5a20dc76d128bf4333 294 SUPERFAMILY SSF161098 15 286 7.94E-52 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_00940 b9fcf76e0e259b5a20dc76d128bf4333 294 Gene3D G3DSA:1.10.3720.10 10 288 3.3E-47 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_25160 61ba5cdd2025835919677782ca28c69a 255 SUPERFAMILY SSF51182 18 184 1.25E-9 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily AMK58_25160 61ba5cdd2025835919677782ca28c69a 255 Gene3D G3DSA:1.10.10.60 157 255 4.1E-21 T 11-10-2018 AMK58_25160 61ba5cdd2025835919677782ca28c69a 255 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 209 250 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMK58_25160 61ba5cdd2025835919677782ca28c69a 255 Pfam PF12833 Helix-turn-helix domain 178 253 6.3E-23 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMK58_25160 61ba5cdd2025835919677782ca28c69a 255 SUPERFAMILY SSF46689 209 253 1.47E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_25160 61ba5cdd2025835919677782ca28c69a 255 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 223 238 3.4E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMK58_25160 61ba5cdd2025835919677782ca28c69a 255 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 238 254 3.4E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMK58_25160 61ba5cdd2025835919677782ca28c69a 255 SMART SM00342 172 254 9.7E-24 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMK58_10680 8377dd28d84567af4be8975a715df202 340 Gene3D G3DSA:3.40.190.10 160 339 8.7E-21 T 11-10-2018 AMK58_10680 8377dd28d84567af4be8975a715df202 340 SMART SM00062 37 273 0.0065 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMK58_10680 8377dd28d84567af4be8975a715df202 340 Gene3D G3DSA:3.40.190.10 35 159 1.6E-16 T 11-10-2018 AMK58_10680 8377dd28d84567af4be8975a715df202 340 SUPERFAMILY SSF53850 38 258 4.91E-35 T 11-10-2018 AMK58_10680 8377dd28d84567af4be8975a715df202 340 Pfam PF09084 NMT1/THI5 like 47 256 9.8E-27 T 11-10-2018 IPR015168 SsuA/THI5-like AMK58_04410 7972ed37afb456cd8326144b19ea5230 245 Pfam PF02562 PhoH-like protein 43 243 4.7E-81 T 11-10-2018 IPR003714 PhoH-like protein GO:0005524 AMK58_04410 7972ed37afb456cd8326144b19ea5230 245 SUPERFAMILY SSF52540 43 222 5.07E-36 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_04410 7972ed37afb456cd8326144b19ea5230 245 Gene3D G3DSA:3.40.50.300 41 245 3.3E-69 T 11-10-2018 AMK58_05740 a5adb7d2449aa8f6b71cb175d5acde07 330 SUPERFAMILY SSF53686 11 323 3.27E-88 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMK58_05740 a5adb7d2449aa8f6b71cb175d5acde07 330 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 25 315 7.3E-73 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AMK58_05740 a5adb7d2449aa8f6b71cb175d5acde07 330 Gene3D G3DSA:3.40.50.1100 14 320 2.5E-105 T 11-10-2018 AMK58_05740 a5adb7d2449aa8f6b71cb175d5acde07 330 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 49 62 - T 11-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 AMK58_05740 a5adb7d2449aa8f6b71cb175d5acde07 330 Gene3D G3DSA:3.40.50.1100 57 153 2.5E-105 T 11-10-2018 AMK58_26925 9a7b7bb92d8ec23e9405c518e04a5b94 441 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 17 419 1.6E-114 T 11-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 AMK58_26925 9a7b7bb92d8ec23e9405c518e04a5b94 441 TIGRFAM TIGR03173 pbuX: xanthine permease 25 422 3.8E-154 T 11-10-2018 IPR017588 Uric acid permease UacT-like GO:0016021|GO:0022857|GO:0055085 AMK58_26925 9a7b7bb92d8ec23e9405c518e04a5b94 441 Pfam PF00860 Permease family 22 388 1.2E-102 T 11-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 AMK58_11265 c1dfa218157132003cdbbf76d5e24192 228 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 31 219 1.8E-77 T 11-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMK58_11265 c1dfa218157132003cdbbf76d5e24192 228 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 27 219 1.8E-71 T 11-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMK58_11265 c1dfa218157132003cdbbf76d5e24192 228 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 24 226 40.039 T 11-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMK58_11265 c1dfa218157132003cdbbf76d5e24192 228 SUPERFAMILY SSF55821 20 222 4.81E-79 T 11-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily AMK58_11265 c1dfa218157132003cdbbf76d5e24192 228 Gene3D G3DSA:3.90.870.10 12 227 1.6E-83 T 11-10-2018 AMK58_07560 fa40d7a639fa9313aae432d27c11a8bd 312 SUPERFAMILY SSF53850 22 312 1.06E-74 T 11-10-2018 AMK58_07560 fa40d7a639fa9313aae432d27c11a8bd 312 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 6 310 7.0E-115 T 11-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family AMK58_07560 fa40d7a639fa9313aae432d27c11a8bd 312 Gene3D G3DSA:3.40.190.10 27 310 5.1E-97 T 11-10-2018 AMK58_07560 fa40d7a639fa9313aae432d27c11a8bd 312 Gene3D G3DSA:3.40.190.10 111 247 5.1E-97 T 11-10-2018 AMK58_07560 fa40d7a639fa9313aae432d27c11a8bd 312 Pfam PF16868 NMT1-like family 27 310 9.5E-92 T 11-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family AMK58_04320 7410377b3322623eaccd08a1f1ebbad3 66 PIRSF PIRSF036704 1 65 6.3E-11 T 11-10-2018 IPR014177 Putative formate dehydrogenase, TAT signal-containing AMK58_24255 799ce1a86e11b74c37261af90489c233 232 Gene3D G3DSA:3.40.50.2300 2 131 4.8E-40 T 11-10-2018 AMK58_24255 799ce1a86e11b74c37261af90489c233 232 SUPERFAMILY SSF52172 7 188 2.7E-44 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_24255 799ce1a86e11b74c37261af90489c233 232 Gene3D G3DSA:1.10.10.10 132 232 1.1E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_24255 799ce1a86e11b74c37261af90489c233 232 SMART SM00448 8 119 2.7E-43 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_24255 799ce1a86e11b74c37261af90489c233 232 Pfam PF00072 Response regulator receiver domain 10 120 7.0E-31 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_24255 799ce1a86e11b74c37261af90489c233 232 SMART SM00862 154 228 3.9E-21 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_24255 799ce1a86e11b74c37261af90489c233 232 Pfam PF00486 Transcriptional regulatory protein, C terminal 154 228 2.9E-21 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMK58_20925 f1dbb265d9795fb07ab4ba7eba0204b8 186 Hamap MF_01114 Regulatory protein RecX [recX]. 12 184 11.204 T 11-10-2018 IPR003783 Regulatory protein RecX GO:0006282 AMK58_20925 f1dbb265d9795fb07ab4ba7eba0204b8 186 Gene3D G3DSA:1.10.10.10 79 122 8.7E-6 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_20925 f1dbb265d9795fb07ab4ba7eba0204b8 186 Pfam PF02631 RecX family 62 179 1.3E-17 T 11-10-2018 IPR003783 Regulatory protein RecX GO:0006282 AMK58_10675 2278407128150b96ecaac3ba3e489147 272 SUPERFAMILY SSF161098 74 256 9.16E-31 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_10675 2278407128150b96ecaac3ba3e489147 272 Gene3D G3DSA:1.10.3720.10 74 270 2.3E-22 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_10675 2278407128150b96ecaac3ba3e489147 272 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 98 268 3.8E-20 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_10200 506d1aa071e1a7b2f9f810dac3cee9ae 151 SUPERFAMILY SSF54637 2 148 8.57E-41 T 11-10-2018 IPR029069 HotDog domain superfamily AMK58_10200 506d1aa071e1a7b2f9f810dac3cee9ae 151 Pfam PF01575 MaoC like domain 16 119 5.8E-17 T 11-10-2018 IPR002539 MaoC-like dehydratase domain AMK58_10200 506d1aa071e1a7b2f9f810dac3cee9ae 151 Gene3D G3DSA:3.10.129.10 1 151 3.6E-48 T 11-10-2018 AMK58_07660 0c8b2fd2e36a171e5b2589f122e2fb0e 258 Gene3D G3DSA:3.40.50.300 14 258 2.5E-78 T 11-10-2018 AMK58_07660 0c8b2fd2e36a171e5b2589f122e2fb0e 258 PIRSF PIRSF039085 14 257 6.5E-110 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AMK58_07660 0c8b2fd2e36a171e5b2589f122e2fb0e 258 Pfam PF00005 ABC transporter 33 181 3.0E-37 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_07660 0c8b2fd2e36a171e5b2589f122e2fb0e 258 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_07660 0c8b2fd2e36a171e5b2589f122e2fb0e 258 SUPERFAMILY SSF52540 17 251 1.05E-81 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_07660 0c8b2fd2e36a171e5b2589f122e2fb0e 258 SMART SM00382 42 229 3.2E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_13175 59de52378e7cecb6dff99011fc48a3d9 361 Hamap MF_01665 Heme A synthase [ctaA]. 20 356 24.432 T 11-10-2018 IPR023754 Heme A synthase, type 2 GO:0006784|GO:0016020|GO:0016627|GO:0055114 Reactome: R-HSA-189451 AMK58_13175 59de52378e7cecb6dff99011fc48a3d9 361 Pfam PF02628 Cytochrome oxidase assembly protein 24 344 2.6E-105 T 11-10-2018 IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 Reactome: R-HSA-189451 AMK58_18015 67023023c1e48f584f0fb946f89e607a 215 Gene3D G3DSA:3.90.190.10 25 168 5.4E-30 T 11-10-2018 IPR029021 Protein-tyrosine phosphatase-like AMK58_18015 67023023c1e48f584f0fb946f89e607a 215 Pfam PF04273 Putative phosphatase (DUF442) 31 124 3.0E-8 T 11-10-2018 IPR005939 Beta-lactamase hydrolase-like GO:0016787 AMK58_18015 67023023c1e48f584f0fb946f89e607a 215 SUPERFAMILY SSF52799 26 170 2.45E-24 T 11-10-2018 IPR029021 Protein-tyrosine phosphatase-like AMK58_19650 cdbb5bdabef35475f7dcd5b171f73862 240 Pfam PF11967 Recombination protein O N terminal 1 76 2.6E-19 T 11-10-2018 IPR022572 DNA replication/recombination mediator RecO, N-terminal AMK58_19650 cdbb5bdabef35475f7dcd5b171f73862 240 Pfam PF02565 Recombination protein O C terminal 83 221 3.1E-29 T 11-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 AMK58_19650 cdbb5bdabef35475f7dcd5b171f73862 240 SUPERFAMILY SSF50249 1 70 3.77E-12 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_19650 cdbb5bdabef35475f7dcd5b171f73862 240 Hamap MF_00201 DNA repair protein RecO [recO]. 1 232 19.922 T 11-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 AMK58_19650 cdbb5bdabef35475f7dcd5b171f73862 240 TIGRFAM TIGR00613 reco: DNA repair protein RecO 4 176 5.9E-31 T 11-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 AMK58_19650 cdbb5bdabef35475f7dcd5b171f73862 240 SUPERFAMILY SSF57863 82 215 7.85E-14 T 11-10-2018 IPR037278 ARFGAP/RecO-like zinc finger AMK58_19650 cdbb5bdabef35475f7dcd5b171f73862 240 Gene3D G3DSA:2.40.50.140 1 73 2.4E-11 T 11-10-2018 AMK58_19650 cdbb5bdabef35475f7dcd5b171f73862 240 ProDom PD202328 DNA REPAIR RECOMBINATION RECO DAMAGE O O RECO-RELATED RECOMBINATIONAL RP549 131 215 2.0E-17 T 11-10-2018 AMK58_25725 347ff8513aeda93e7b9eeebb65b2251f 475 Gene3D G3DSA:3.40.309.10 228 412 2.5E-160 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMK58_25725 347ff8513aeda93e7b9eeebb65b2251f 475 SUPERFAMILY SSF53720 15 454 1.7E-75 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMK58_25725 347ff8513aeda93e7b9eeebb65b2251f 475 Pfam PF00171 Aldehyde dehydrogenase family 11 279 1.5E-23 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMK58_25725 347ff8513aeda93e7b9eeebb65b2251f 475 Gene3D G3DSA:3.40.605.10 21 451 2.5E-160 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMK58_21080 295c21c96fc87b971c734e8624ffc558 249 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 73 236 2.8E-14 T 11-10-2018 IPR010664 Lipopolysaccharide assembly, LptC-related AMK58_21080 295c21c96fc87b971c734e8624ffc558 249 TIGRFAM TIGR04409 LptC_YrbK: LPS export ABC transporter periplasmic protein LptC 70 236 4.7E-17 T 11-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 AMK58_06075 c7759293ff702d2f84b92592e62aea8a 444 Hamap MF_00303 Trigger factor [tig]. 1 424 21.774 T 11-10-2018 IPR005215 Trigger factor GO:0015031 AMK58_06075 c7759293ff702d2f84b92592e62aea8a 444 SUPERFAMILY SSF109998 250 435 5.4E-46 T 11-10-2018 IPR027304 Trigger factor/SurA domain superfamily AMK58_06075 c7759293ff702d2f84b92592e62aea8a 444 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 262 419 2.9E-41 T 11-10-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 AMK58_06075 c7759293ff702d2f84b92592e62aea8a 444 TIGRFAM TIGR00115 tig: trigger factor 11 418 5.6E-129 T 11-10-2018 IPR005215 Trigger factor GO:0015031 AMK58_06075 c7759293ff702d2f84b92592e62aea8a 444 SUPERFAMILY SSF54534 88 243 1.96E-31 T 11-10-2018 AMK58_06075 c7759293ff702d2f84b92592e62aea8a 444 SUPERFAMILY SSF102735 1 129 2.09E-37 T 11-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 AMK58_06075 c7759293ff702d2f84b92592e62aea8a 444 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 158 239 2.2E-12 T 11-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain AMK58_06075 c7759293ff702d2f84b92592e62aea8a 444 Gene3D G3DSA:3.30.70.1050 1 115 6.5E-35 T 11-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 AMK58_06075 c7759293ff702d2f84b92592e62aea8a 444 Gene3D G3DSA:1.10.3120.10 116 423 6.4E-89 T 11-10-2018 IPR037041 Trigger factor, C-terminal domain superfamily GO:0006457|GO:0015031 AMK58_06075 c7759293ff702d2f84b92592e62aea8a 444 Gene3D G3DSA:3.10.50.40 150 248 6.4E-89 T 11-10-2018 AMK58_06075 c7759293ff702d2f84b92592e62aea8a 444 PIRSF PIRSF003095 1 440 6.0E-133 T 11-10-2018 IPR005215 Trigger factor GO:0015031 AMK58_06075 c7759293ff702d2f84b92592e62aea8a 444 Pfam PF05697 Bacterial trigger factor protein (TF) 1 144 8.1E-39 T 11-10-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 AMK58_05060 f73797ccb3251f0cb2121e89d510ace2 255 Gene3D G3DSA:3.90.1340.10 23 85 4.0E-13 T 11-10-2018 IPR037053 Phage tail collar domain superfamily AMK58_05060 f73797ccb3251f0cb2121e89d510ace2 255 SUPERFAMILY SSF88874 28 168 1.57E-27 T 11-10-2018 AMK58_05060 f73797ccb3251f0cb2121e89d510ace2 255 Pfam PF07484 Phage Tail Collar Domain 33 88 4.6E-20 T 11-10-2018 IPR011083 Phage tail collar domain AMK58_03595 ae495ff138e5882a955cfd185f6cb649 129 SUPERFAMILY SSF52172 7 127 2.7E-33 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_03595 ae495ff138e5882a955cfd185f6cb649 129 SMART SM00448 8 124 4.1E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_03595 ae495ff138e5882a955cfd185f6cb649 129 Pfam PF00072 Response regulator receiver domain 10 121 1.1E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_03595 ae495ff138e5882a955cfd185f6cb649 129 Gene3D G3DSA:3.40.50.2300 4 127 2.7E-32 T 11-10-2018 AMK58_06895 71c00bac4c8627592ccf16638beec7ea 233 PIRSF PIRSF036990 1 232 1.7E-81 T 11-10-2018 IPR017080 Uncharacterised conserved protein UCP036990, CBS, BON AMK58_06895 71c00bac4c8627592ccf16638beec7ea 233 Gene3D G3DSA:3.10.580.10 1 161 5.4E-42 T 11-10-2018 AMK58_06895 71c00bac4c8627592ccf16638beec7ea 233 SUPERFAMILY SSF54631 1 149 3.92E-39 T 11-10-2018 AMK58_06895 71c00bac4c8627592ccf16638beec7ea 233 Pfam PF04972 BON domain 156 223 2.6E-12 T 11-10-2018 IPR007055 BON domain AMK58_06895 71c00bac4c8627592ccf16638beec7ea 233 Pfam PF00571 CBS domain 90 144 1.1E-12 T 11-10-2018 IPR000644 CBS domain AMK58_06895 71c00bac4c8627592ccf16638beec7ea 233 Pfam PF00571 CBS domain 4 55 7.8E-17 T 11-10-2018 IPR000644 CBS domain AMK58_06895 71c00bac4c8627592ccf16638beec7ea 233 SMART SM00116 10 58 1.2E-12 T 11-10-2018 IPR000644 CBS domain AMK58_06895 71c00bac4c8627592ccf16638beec7ea 233 SMART SM00116 97 144 4.6E-9 T 11-10-2018 IPR000644 CBS domain AMK58_02885 0e6797d090b080cc238a716076443827 397 Pfam PF07690 Major Facilitator Superfamily 23 350 5.4E-32 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMK58_02885 0e6797d090b080cc238a716076443827 397 SUPERFAMILY SSF103473 15 389 1.7E-51 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_02885 0e6797d090b080cc238a716076443827 397 Gene3D G3DSA:1.20.1250.20 15 387 1.3E-40 T 11-10-2018 AMK58_13280 82a4998bcae962074195fb064f638edb 155 TIGRFAM TIGR02284 TIGR02284: conserved hypothetical protein 14 151 2.7E-33 T 11-10-2018 IPR011971 Conserved hypothetical protein CHP02284 AMK58_13280 82a4998bcae962074195fb064f638edb 155 Gene3D G3DSA:1.20.1260.10 7 154 8.1E-42 T 11-10-2018 IPR012347 Ferritin-like AMK58_13280 82a4998bcae962074195fb064f638edb 155 PIRSF PIRSF029477 8 155 1.6E-33 T 11-10-2018 IPR016920 Uncharacterised conserved protein UCP029477 AMK58_13280 82a4998bcae962074195fb064f638edb 155 Pfam PF09537 Domain of unknown function (DUF2383) 14 122 2.9E-29 T 11-10-2018 IPR019052 Domain of unknown function DUF2383 AMK58_13280 82a4998bcae962074195fb064f638edb 155 SUPERFAMILY SSF47240 8 122 2.71E-6 T 11-10-2018 IPR009078 Ferritin-like superfamily AMK58_06240 19e91e3b7adc2c02c76f3fb6b1b5d070 295 Pfam PF00892 EamA-like transporter family 6 133 1.6E-18 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_06240 19e91e3b7adc2c02c76f3fb6b1b5d070 295 Pfam PF00892 EamA-like transporter family 143 282 4.5E-14 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_06240 19e91e3b7adc2c02c76f3fb6b1b5d070 295 SUPERFAMILY SSF103481 39 134 2.09E-12 T 11-10-2018 AMK58_06240 19e91e3b7adc2c02c76f3fb6b1b5d070 295 SUPERFAMILY SSF103481 203 283 9.02E-10 T 11-10-2018 AMK58_10230 e344d240ea6dfe564577df42c6da651c 74 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 69 1.3E-34 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_10230 e344d240ea6dfe564577df42c6da651c 74 PRINTS PR01249 Ribosomal protein L31 signature 2 19 2.2E-14 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_10230 e344d240ea6dfe564577df42c6da651c 74 PRINTS PR01249 Ribosomal protein L31 signature 34 49 2.2E-14 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_10230 e344d240ea6dfe564577df42c6da651c 74 PRINTS PR01249 Ribosomal protein L31 signature 49 67 2.2E-14 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_10230 e344d240ea6dfe564577df42c6da651c 74 Gene3D G3DSA:2.30.170.50 1 73 1.1E-25 T 11-10-2018 AMK58_10230 e344d240ea6dfe564577df42c6da651c 74 ProSitePatterns PS01143 Ribosomal protein L31 signature. 38 59 - T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_10230 e344d240ea6dfe564577df42c6da651c 74 SUPERFAMILY SSF143800 1 70 1.1E-23 T 11-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_10230 e344d240ea6dfe564577df42c6da651c 74 Pfam PF01197 Ribosomal protein L31 1 68 1.4E-27 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_10230 e344d240ea6dfe564577df42c6da651c 74 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 71 26.66 T 11-10-2018 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_11385 15fdfd51bb5d22fed63acdb924da1023 141 SUPERFAMILY SSF158682 2 124 2.62E-20 T 11-10-2018 IPR029024 TerB-like AMK58_11385 15fdfd51bb5d22fed63acdb924da1023 141 Gene3D G3DSA:1.10.3680.10 7 136 9.8E-16 T 11-10-2018 IPR029024 TerB-like AMK58_11385 15fdfd51bb5d22fed63acdb924da1023 141 Pfam PF05099 Tellurite resistance protein TerB 17 122 3.7E-10 T 11-10-2018 IPR007791 Co-chaperone DjlA, N-terminal AMK58_06445 5a42f3f86e58a5654fa84c401f2d60a3 232 Pfam PF01738 Dienelactone hydrolase family 14 230 9.5E-55 T 11-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 AMK58_06445 5a42f3f86e58a5654fa84c401f2d60a3 232 Gene3D G3DSA:3.40.50.1820 1 230 4.9E-63 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_06445 5a42f3f86e58a5654fa84c401f2d60a3 232 SUPERFAMILY SSF53474 2 232 5.08E-55 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_23750 f676f8efb39272e3c83d33b5a6824974 550 SUPERFAMILY SSF52540 326 546 8.17E-40 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_23750 f676f8efb39272e3c83d33b5a6824974 550 Pfam PF00005 ABC transporter 352 485 1.4E-21 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_23750 f676f8efb39272e3c83d33b5a6824974 550 Gene3D G3DSA:3.40.50.300 324 549 4.7E-38 T 11-10-2018 AMK58_23750 f676f8efb39272e3c83d33b5a6824974 550 TIGRFAM TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter 21 535 4.4E-97 T 11-10-2018 IPR005898 Cyclic peptide transporter GO:0005524|GO:0015833|GO:0016021|GO:1904680 AMK58_23750 f676f8efb39272e3c83d33b5a6824974 550 Gene3D G3DSA:1.20.1560.10 7 307 2.3E-14 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMK58_23750 f676f8efb39272e3c83d33b5a6824974 550 SMART SM00382 358 534 2.5E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_23750 f676f8efb39272e3c83d33b5a6824974 550 SUPERFAMILY SSF90123 18 300 6.02E-21 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMK58_23955 d76dd65ebacb25ea817f983fb161ebc6 196 SUPERFAMILY SSF52218 9 183 5.64E-41 T 11-10-2018 IPR029039 Flavoprotein-like superfamily AMK58_23955 d76dd65ebacb25ea817f983fb161ebc6 196 Gene3D G3DSA:3.40.50.360 1 196 2.7E-46 T 11-10-2018 IPR029039 Flavoprotein-like superfamily AMK58_23955 d76dd65ebacb25ea817f983fb161ebc6 196 Pfam PF03358 NADPH-dependent FMN reductase 9 158 2.5E-34 T 11-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AMK58_27560 5a07fc11232edd24ae05a7f2f1967db2 234 Pfam PF07729 FCD domain 96 215 6.5E-26 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_27560 5a07fc11232edd24ae05a7f2f1967db2 234 SUPERFAMILY SSF46785 18 86 5.26E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_27560 5a07fc11232edd24ae05a7f2f1967db2 234 Gene3D G3DSA:1.10.10.10 22 83 1.0E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_27560 5a07fc11232edd24ae05a7f2f1967db2 234 Gene3D G3DSA:1.20.120.530 90 228 4.6E-25 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_27560 5a07fc11232edd24ae05a7f2f1967db2 234 SUPERFAMILY SSF48008 90 221 1.28E-22 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_27560 5a07fc11232edd24ae05a7f2f1967db2 234 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 56 72 3.7E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_27560 5a07fc11232edd24ae05a7f2f1967db2 234 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 56 3.7E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_27560 5a07fc11232edd24ae05a7f2f1967db2 234 Pfam PF00392 Bacterial regulatory proteins, gntR family 24 82 6.5E-19 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_27560 5a07fc11232edd24ae05a7f2f1967db2 234 SMART SM00345 24 82 1.2E-18 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_27560 5a07fc11232edd24ae05a7f2f1967db2 234 SMART SM00895 92 216 1.9E-16 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_19420 1412ad4534924786e27736615d9958f0 214 Pfam PF00072 Response regulator receiver domain 3 114 8.7E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_19420 1412ad4534924786e27736615d9958f0 214 SMART SM00448 1 115 8.5E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_19420 1412ad4534924786e27736615d9958f0 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 168 3.3E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_19420 1412ad4534924786e27736615d9958f0 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 184 196 3.3E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_19420 1412ad4534924786e27736615d9958f0 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 184 3.3E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_19420 1412ad4534924786e27736615d9958f0 214 Gene3D G3DSA:3.40.50.2300 1 127 1.2E-27 T 11-10-2018 AMK58_19420 1412ad4534924786e27736615d9958f0 214 SUPERFAMILY SSF52172 1 129 1.22E-25 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_19420 1412ad4534924786e27736615d9958f0 214 Pfam PF00196 Bacterial regulatory proteins, luxR family 153 206 3.5E-19 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_19420 1412ad4534924786e27736615d9958f0 214 SUPERFAMILY SSF46894 144 208 2.65E-19 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMK58_19420 1412ad4534924786e27736615d9958f0 214 Gene3D G3DSA:1.10.10.10 142 213 3.1E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_19420 1412ad4534924786e27736615d9958f0 214 SMART SM00421 151 208 8.8E-22 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_07820 9a89ffe114ae6dc087f1c2276ba60588 338 Gene3D G3DSA:3.75.10.10 1 337 3.0E-129 T 11-10-2018 AMK58_07820 9a89ffe114ae6dc087f1c2276ba60588 338 Pfam PF04371 Porphyromonas-type peptidyl-arginine deiminase 11 336 8.0E-119 T 11-10-2018 IPR007466 Peptidyl-arginine deiminase, Porphyromonas-type GO:0004668|GO:0009446 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 AMK58_07820 9a89ffe114ae6dc087f1c2276ba60588 338 Hamap MF_01841 Agmatine deiminase [aguA]. 2 337 48.599 T 11-10-2018 IPR017754 Agmatine deiminase GO:0009446|GO:0047632 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 AMK58_07820 9a89ffe114ae6dc087f1c2276ba60588 338 SUPERFAMILY SSF55909 2 337 5.89E-126 T 11-10-2018 AMK58_16700 f24c375e8bf0519c3679c5164491f24d 414 SUPERFAMILY SSF53822 46 411 5.72E-65 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMK58_16700 f24c375e8bf0519c3679c5164491f24d 414 Gene3D G3DSA:3.40.50.2300 167 303 1.1E-68 T 11-10-2018 AMK58_16700 f24c375e8bf0519c3679c5164491f24d 414 Gene3D G3DSA:3.40.50.2300 47 370 1.1E-68 T 11-10-2018 AMK58_16700 f24c375e8bf0519c3679c5164491f24d 414 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 305 318 1.1E-7 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMK58_16700 f24c375e8bf0519c3679c5164491f24d 414 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 46 62 1.1E-7 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMK58_16700 f24c375e8bf0519c3679c5164491f24d 414 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 68 84 1.1E-7 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMK58_16700 f24c375e8bf0519c3679c5164491f24d 414 Pfam PF13458 Periplasmic binding protein 46 387 1.2E-49 T 11-10-2018 IPR028081 Leucine-binding protein domain AMK58_12735 35901bcb83f7f0b8e83920d54852d990 196 SUPERFAMILY SSF55811 8 180 1.9E-36 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMK58_12735 35901bcb83f7f0b8e83920d54852d990 196 Pfam PF00293 NUDIX domain 48 159 8.3E-13 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMK58_12735 35901bcb83f7f0b8e83920d54852d990 196 Gene3D G3DSA:3.90.79.10 5 186 2.7E-43 T 11-10-2018 AMK58_18115 3ff51fa2d1d4091ccc5466f0a4a3aaba 95 Pfam PF11272 Protein of unknown function (DUF3072) 39 93 1.0E-31 T 11-10-2018 IPR021425 Protein of unknown function DUF3072 AMK58_23570 7ca406048108dacd792d37b13a1c71b1 431 Gene3D G3DSA:3.90.1820.20 5 426 3.4E-121 T 11-10-2018 AMK58_23570 7ca406048108dacd792d37b13a1c71b1 431 PRINTS PR00732 Glycosyl hydrolase family 4 signature 170 181 6.8E-25 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMK58_23570 7ca406048108dacd792d37b13a1c71b1 431 PRINTS PR00732 Glycosyl hydrolase family 4 signature 145 162 6.8E-25 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMK58_23570 7ca406048108dacd792d37b13a1c71b1 431 PRINTS PR00732 Glycosyl hydrolase family 4 signature 116 136 6.8E-25 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMK58_23570 7ca406048108dacd792d37b13a1c71b1 431 PRINTS PR00732 Glycosyl hydrolase family 4 signature 79 95 6.8E-25 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMK58_23570 7ca406048108dacd792d37b13a1c71b1 431 PRINTS PR00732 Glycosyl hydrolase family 4 signature 196 208 6.8E-25 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMK58_23570 7ca406048108dacd792d37b13a1c71b1 431 PRINTS PR00732 Glycosyl hydrolase family 4 signature 100 113 6.8E-25 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMK58_23570 7ca406048108dacd792d37b13a1c71b1 431 PRINTS PR00732 Glycosyl hydrolase family 4 signature 10 25 6.8E-25 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMK58_23570 7ca406048108dacd792d37b13a1c71b1 431 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 201 406 4.5E-41 T 11-10-2018 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 AMK58_23570 7ca406048108dacd792d37b13a1c71b1 431 Pfam PF02056 Family 4 glycosyl hydrolase 10 189 1.8E-42 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMK58_23570 7ca406048108dacd792d37b13a1c71b1 431 SUPERFAMILY SSF56327 174 427 1.19E-59 T 11-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AMK58_23570 7ca406048108dacd792d37b13a1c71b1 431 SUPERFAMILY SSF51735 8 173 5.16E-43 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_14605 45ab0a317a0bfa0802e7d80c4bd0a049 208 SUPERFAMILY SSF109604 12 182 1.26E-32 T 11-10-2018 AMK58_14605 45ab0a317a0bfa0802e7d80c4bd0a049 208 Gene3D G3DSA:1.10.3210.10 7 190 9.0E-44 T 11-10-2018 AMK58_00110 c607127d4217f0c0e31408e931e369c8 205 PIRSF PIRSF015592 2 200 5.9E-54 T 11-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 AMK58_00110 c607127d4217f0c0e31408e931e369c8 205 Pfam PF01470 Pyroglutamyl peptidase 5 193 1.4E-48 T 11-10-2018 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like MetaCyc: PWY-7942 AMK58_00110 c607127d4217f0c0e31408e931e369c8 205 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 77 97 7.7E-24 T 11-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 AMK58_00110 c607127d4217f0c0e31408e931e369c8 205 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 129 145 7.7E-24 T 11-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 AMK58_00110 c607127d4217f0c0e31408e931e369c8 205 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 5 28 7.7E-24 T 11-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 AMK58_00110 c607127d4217f0c0e31408e931e369c8 205 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 159 171 7.7E-24 T 11-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 AMK58_00110 c607127d4217f0c0e31408e931e369c8 205 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 59 71 7.7E-24 T 11-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 AMK58_00110 c607127d4217f0c0e31408e931e369c8 205 SUPERFAMILY SSF53182 5 197 7.85E-54 T 11-10-2018 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily MetaCyc: PWY-7942 AMK58_00110 c607127d4217f0c0e31408e931e369c8 205 Gene3D G3DSA:3.40.630.20 2 203 9.2E-61 T 11-10-2018 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily MetaCyc: PWY-7942 AMK58_00005 ffbe4c7a899e547c8f664071964cc6ec 50 Pfam PF08335 GlnD PII-uridylyltransferase 2 49 2.2E-12 T 11-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 AMK58_26390 54ff341b7609c14180ce2a2ecf9a9e5f 203 SMART SM00357 10 74 5.9E-4 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 AMK58_26390 54ff341b7609c14180ce2a2ecf9a9e5f 203 SMART SM00357 137 203 7.6 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 AMK58_26390 54ff341b7609c14180ce2a2ecf9a9e5f 203 Pfam PF00313 'Cold-shock' DNA-binding domain 137 201 1.5E-5 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_26390 54ff341b7609c14180ce2a2ecf9a9e5f 203 Pfam PF00313 'Cold-shock' DNA-binding domain 10 71 7.5E-9 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_26390 54ff341b7609c14180ce2a2ecf9a9e5f 203 SUPERFAMILY SSF50249 8 73 7.1E-11 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_26390 54ff341b7609c14180ce2a2ecf9a9e5f 203 Gene3D G3DSA:2.40.50.140 8 77 3.8E-12 T 11-10-2018 AMK58_26390 54ff341b7609c14180ce2a2ecf9a9e5f 203 PRINTS PR00050 Cold shock protein signature 32 41 8.8E-5 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_26390 54ff341b7609c14180ce2a2ecf9a9e5f 203 PRINTS PR00050 Cold shock protein signature 11 26 8.8E-5 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_26390 54ff341b7609c14180ce2a2ecf9a9e5f 203 PRINTS PR00050 Cold shock protein signature 47 65 8.8E-5 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_26390 54ff341b7609c14180ce2a2ecf9a9e5f 203 Gene3D G3DSA:2.40.50.140 134 202 1.9E-7 T 11-10-2018 AMK58_26390 54ff341b7609c14180ce2a2ecf9a9e5f 203 SUPERFAMILY SSF50249 132 202 5.14E-7 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_08760 77db2715ce1e24d5ec159c195f8cbcf8 251 Gene3D G3DSA:3.40.190.10 51 248 5.5E-13 T 11-10-2018 AMK58_08760 77db2715ce1e24d5ec159c195f8cbcf8 251 SUPERFAMILY SSF53850 43 241 1.21E-17 T 11-10-2018 AMK58_08760 77db2715ce1e24d5ec159c195f8cbcf8 251 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 46 237 1.6E-8 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMK58_08760 77db2715ce1e24d5ec159c195f8cbcf8 251 Gene3D G3DSA:3.40.190.10 128 222 5.5E-13 T 11-10-2018 AMK58_03120 297b5f364bbd49914c0bf2a934071e8b 156 Pfam PF14316 Domain of unknown function (DUF4381) 9 150 3.4E-41 T 11-10-2018 IPR025489 Protein of unknown function (DUF4381 AMK58_18430 b773262ac1cedce032dcaab190edf5b1 268 Gene3D G3DSA:1.10.3290.10 5 247 4.9E-35 T 11-10-2018 IPR036597 Fido-like domain superfamily AMK58_18430 b773262ac1cedce032dcaab190edf5b1 268 SUPERFAMILY SSF140931 74 240 1.44E-25 T 11-10-2018 IPR036597 Fido-like domain superfamily AMK58_18430 b773262ac1cedce032dcaab190edf5b1 268 Pfam PF02661 Fic/DOC family 96 186 4.0E-11 T 11-10-2018 IPR003812 Fido domain AMK58_01875 5105dd372f6437d3f1baf07a4d04a252 325 Pfam PF08878 Domain of unknown function (DUF1837) 56 305 8.0E-54 T 11-10-2018 IPR014976 Protein of unknown function DUF1837 AMK58_22015 5363dd51799e94e2243eda468e7cdb32 359 Gene3D G3DSA:3.90.25.10 214 345 5.1E-62 T 11-10-2018 AMK58_22015 5363dd51799e94e2243eda468e7cdb32 359 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 278 3.0E-35 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMK58_22015 5363dd51799e94e2243eda468e7cdb32 359 Gene3D G3DSA:3.40.50.720 5 278 5.1E-62 T 11-10-2018 AMK58_22015 5363dd51799e94e2243eda468e7cdb32 359 SUPERFAMILY SSF51735 3 347 1.79E-59 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_26775 44714a86864e8f52e6e6e610d6df1807 388 SUPERFAMILY SSF56059 2 385 6.71E-30 T 11-10-2018 AMK58_26775 44714a86864e8f52e6e6e610d6df1807 388 SUPERFAMILY SSF52440 178 280 4.03E-18 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMK58_26775 44714a86864e8f52e6e6e610d6df1807 388 Pfam PF03738 Glutathionylspermidine synthase preATP-grasp 26 386 3.6E-67 T 11-10-2018 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain AMK58_24765 c6e538461c0b3c403525a19e95e7b99c 398 SMART SM00382 53 250 7.0E-20 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_24765 c6e538461c0b3c403525a19e95e7b99c 398 ProSitePatterns PS00211 ABC transporters family signature. 165 179 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_24765 c6e538461c0b3c403525a19e95e7b99c 398 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 36 394 1.7E-136 T 11-10-2018 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 AMK58_24765 c6e538461c0b3c403525a19e95e7b99c 398 SUPERFAMILY SSF52540 32 271 1.92E-75 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_24765 c6e538461c0b3c403525a19e95e7b99c 398 Pfam PF00005 ABC transporter 46 192 1.1E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_24765 c6e538461c0b3c403525a19e95e7b99c 398 SUPERFAMILY SSF54631 274 393 6.08E-11 T 11-10-2018 AMK58_24765 c6e538461c0b3c403525a19e95e7b99c 398 Gene3D G3DSA:3.40.50.300 31 308 1.3E-78 T 11-10-2018 AMK58_10300 e392964dd33011e76cb14ec34213ebb1 193 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 23 177 1.6E-63 T 11-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 AMK58_10300 e392964dd33011e76cb14ec34213ebb1 193 Pfam PF00333 Ribosomal protein S5, N-terminal domain 25 89 2.7E-27 T 11-10-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 AMK58_10300 e392964dd33011e76cb14ec34213ebb1 193 Pfam PF03719 Ribosomal protein S5, C-terminal domain 102 172 1.2E-30 T 11-10-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 AMK58_10300 e392964dd33011e76cb14ec34213ebb1 193 SUPERFAMILY SSF54211 94 173 8.34E-25 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMK58_10300 e392964dd33011e76cb14ec34213ebb1 193 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 178 35.966 T 11-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 AMK58_10300 e392964dd33011e76cb14ec34213ebb1 193 SUPERFAMILY SSF54768 22 90 2.3E-22 T 11-10-2018 AMK58_10300 e392964dd33011e76cb14ec34213ebb1 193 ProSitePatterns PS00585 Ribosomal protein S5 signature. 42 74 - T 11-10-2018 IPR018192 Ribosomal protein S5, N-terminal, conserved site AMK58_10300 e392964dd33011e76cb14ec34213ebb1 193 Gene3D G3DSA:3.30.160.20 17 87 2.1E-29 T 11-10-2018 AMK58_10300 e392964dd33011e76cb14ec34213ebb1 193 Gene3D G3DSA:3.30.230.10 90 182 2.3E-33 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMK58_02240 4189defbae61f535f093649bf001ed9e 268 Gene3D G3DSA:3.30.2010.10 150 236 1.8E-14 T 11-10-2018 AMK58_02240 4189defbae61f535f093649bf001ed9e 268 Pfam PF01863 Protein of unknown function DUF45 41 238 1.4E-49 T 11-10-2018 IPR002725 Protein of unknown function DUF45 AMK58_10580 7999596dc598f14e7ffd6ebfe31bc1c1 248 Gene3D G3DSA:3.40.50.300 2 248 1.2E-54 T 11-10-2018 AMK58_10580 7999596dc598f14e7ffd6ebfe31bc1c1 248 SUPERFAMILY SSF52540 6 246 6.2E-55 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_10580 7999596dc598f14e7ffd6ebfe31bc1c1 248 Pfam PF00005 ABC transporter 23 178 3.3E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_10580 7999596dc598f14e7ffd6ebfe31bc1c1 248 TIGRFAM TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD 7 248 3.7E-114 T 11-10-2018 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD AMK58_10580 7999596dc598f14e7ffd6ebfe31bc1c1 248 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 226 247 8.1E-6 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AMK58_13480 bf229f1dd2e7d6a804606b054429093b 412 Gene3D G3DSA:3.40.50.1460 104 256 9.8E-8 T 11-10-2018 AMK58_13480 bf229f1dd2e7d6a804606b054429093b 412 SUPERFAMILY SSF52129 109 256 2.09E-6 T 11-10-2018 IPR029030 Caspase-like domain superfamily AMK58_13480 bf229f1dd2e7d6a804606b054429093b 412 Pfam PF00656 Caspase domain 86 198 6.2E-5 T 11-10-2018 AMK58_25385 e6c12b84bf4d1bedac92252f56656a6e 402 SUPERFAMILY SSF103473 18 393 4.71E-49 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_25385 e6c12b84bf4d1bedac92252f56656a6e 402 Gene3D G3DSA:1.20.1250.20 12 391 6.6E-41 T 11-10-2018 AMK58_25385 e6c12b84bf4d1bedac92252f56656a6e 402 Hamap MF_02091 Uncharacterized MFS-type transporter YfcJ [yfcJ]. 18 396 37.09 T 11-10-2018 IPR037541 Uncharacterized MFS-type transporter YfcJ AMK58_25385 e6c12b84bf4d1bedac92252f56656a6e 402 Pfam PF07690 Major Facilitator Superfamily 229 391 3.2E-16 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMK58_14625 98a138270800326089ec86304ae38346 230 PIRSF PIRSF033239 26 226 2.8E-54 T 11-10-2018 IPR010331 Exopolysaccharide synthesis, ExoD AMK58_14625 98a138270800326089ec86304ae38346 230 Pfam PF06055 Exopolysaccharide synthesis, ExoD 36 211 2.6E-54 T 11-10-2018 IPR010331 Exopolysaccharide synthesis, ExoD AMK58_23490 3d9289b3e99a5f3d4e3d8f62d941bc3c 707 SUPERFAMILY SSF52540 26 275 1.62E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_23490 3d9289b3e99a5f3d4e3d8f62d941bc3c 707 ProSitePatterns PS00211 ABC transporters family signature. 522 536 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_23490 3d9289b3e99a5f3d4e3d8f62d941bc3c 707 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 256 321 7.1E-18 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMK58_23490 3d9289b3e99a5f3d4e3d8f62d941bc3c 707 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 602 665 1.4E-11 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMK58_23490 3d9289b3e99a5f3d4e3d8f62d941bc3c 707 SUPERFAMILY SSF52540 371 620 2.11E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_23490 3d9289b3e99a5f3d4e3d8f62d941bc3c 707 Gene3D G3DSA:3.40.50.300 23 348 1.2E-92 T 11-10-2018 AMK58_23490 3d9289b3e99a5f3d4e3d8f62d941bc3c 707 Gene3D G3DSA:3.40.50.300 369 698 5.0E-85 T 11-10-2018 AMK58_23490 3d9289b3e99a5f3d4e3d8f62d941bc3c 707 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 600 687 2.4E-15 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMK58_23490 3d9289b3e99a5f3d4e3d8f62d941bc3c 707 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 254 341 6.6E-23 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMK58_23490 3d9289b3e99a5f3d4e3d8f62d941bc3c 707 ProSitePatterns PS00211 ABC transporters family signature. 177 191 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_23490 3d9289b3e99a5f3d4e3d8f62d941bc3c 707 Pfam PF00005 ABC transporter 47 204 2.7E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_23490 3d9289b3e99a5f3d4e3d8f62d941bc3c 707 Pfam PF00005 ABC transporter 399 549 2.0E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_23490 3d9289b3e99a5f3d4e3d8f62d941bc3c 707 SMART SM00382 55 253 1.4E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_23490 3d9289b3e99a5f3d4e3d8f62d941bc3c 707 SMART SM00382 407 599 1.0E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_03940 e01df1a425102b41a5c2dd03bc3f4589 361 ProSitePatterns PS01347 MraY family signature 1. 69 81 - T 11-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMK58_03940 e01df1a425102b41a5c2dd03bc3f4589 361 ProSitePatterns PS01348 MraY family signature 2. 190 201 - T 11-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMK58_03940 e01df1a425102b41a5c2dd03bc3f4589 361 Pfam PF00953 Glycosyl transferase family 4 100 285 6.2E-33 T 11-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 AMK58_03940 e01df1a425102b41a5c2dd03bc3f4589 361 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 25 359 24.851 T 11-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMK58_03940 e01df1a425102b41a5c2dd03bc3f4589 361 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 39 361 6.2E-131 T 11-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMK58_03940 e01df1a425102b41a5c2dd03bc3f4589 361 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 69 81 4.9E-5 T 11-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMK58_27265 147f55edc05f1e1f24a2b148b1436c73 393 Pfam PF00155 Aminotransferase class I and II 42 385 9.1E-61 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMK58_27265 147f55edc05f1e1f24a2b148b1436c73 393 Gene3D G3DSA:3.40.640.10 58 292 1.1E-128 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_27265 147f55edc05f1e1f24a2b148b1436c73 393 TIGRFAM TIGR00858 bioF: 8-amino-7-oxononanoate synthase 21 385 2.3E-131 T 11-10-2018 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 AMK58_27265 147f55edc05f1e1f24a2b148b1436c73 393 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 241 250 - T 11-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 AMK58_27265 147f55edc05f1e1f24a2b148b1436c73 393 SUPERFAMILY SSF53383 5 390 3.99E-106 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_27265 147f55edc05f1e1f24a2b148b1436c73 393 Gene3D G3DSA:3.90.1150.10 42 383 1.1E-128 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_06885 913a0f9a8d1e2ef7308c419b8267077a 144 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 58 141 1.0E-36 T 11-10-2018 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 AMK58_15765 cec3c38b055177581f47ed41055c8845 357 SUPERFAMILY SSF51735 1 352 1.38E-22 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_15765 cec3c38b055177581f47ed41055c8845 357 Gene3D G3DSA:3.40.50.720 1 356 3.5E-100 T 11-10-2018 AMK58_24380 fce86670204b690af246e246429e4188 425 PIRSF PIRSF006066 1 425 2.8E-118 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 AMK58_24380 fce86670204b690af246e246429e4188 425 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 6 415 1.8E-97 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit AMK58_24380 fce86670204b690af246e246429e4188 425 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 15 421 9.6E-115 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 AMK58_06610 722d42496c530700bb6864f1fd38b1df 143 TIGRFAM TIGR01616 nitro_assoc: nitrogenase-associated protein 3 119 2.8E-41 T 11-10-2018 IPR006503 Nitrogenase-associated protein AMK58_06610 722d42496c530700bb6864f1fd38b1df 143 SUPERFAMILY SSF52833 4 117 5.59E-24 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_06610 722d42496c530700bb6864f1fd38b1df 143 Pfam PF03960 ArsC family 57 110 8.1E-7 T 11-10-2018 IPR006660 Arsenate reductase-like AMK58_06610 722d42496c530700bb6864f1fd38b1df 143 Gene3D G3DSA:3.40.30.10 1 114 4.1E-17 T 11-10-2018 AMK58_21975 5873c067cfd94f67569d701e6dd212ee 427 Gene3D G3DSA:3.40.50.2000 225 404 1.5E-29 T 11-10-2018 AMK58_21975 5873c067cfd94f67569d701e6dd212ee 427 Gene3D G3DSA:3.40.50.2000 16 213 2.6E-5 T 11-10-2018 AMK58_21975 5873c067cfd94f67569d701e6dd212ee 427 Pfam PF00534 Glycosyl transferases group 1 244 379 2.8E-18 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 AMK58_21975 5873c067cfd94f67569d701e6dd212ee 427 SUPERFAMILY SSF53756 35 407 2.29E-42 T 11-10-2018 AMK58_23575 faa4b7abf8d8076636be35f1a36d8ef3 170 Pfam PF11154 Protein of unknown function (DUF2934) 4 40 1.5E-15 T 11-10-2018 IPR021327 Protein of unknown function DUF2934 AMK58_00755 dbd6a4a5abf6d4bab9cab771023cfad5 239 Pfam PF04296 Protein of unknown function (DUF448) 38 114 6.5E-21 T 11-10-2018 IPR007393 Domain of unknown function DUF448 AMK58_00755 dbd6a4a5abf6d4bab9cab771023cfad5 239 SUPERFAMILY SSF55315 119 204 1.2E-8 T 11-10-2018 IPR029064 50S ribosomal protein L30e-like AMK58_00755 dbd6a4a5abf6d4bab9cab771023cfad5 239 Gene3D G3DSA:3.30.1330.30 120 216 4.5E-9 T 11-10-2018 IPR029064 50S ribosomal protein L30e-like AMK58_00755 dbd6a4a5abf6d4bab9cab771023cfad5 239 SUPERFAMILY SSF64376 34 122 6.8E-24 T 11-10-2018 IPR035931 YlxR-like superfamily AMK58_00755 dbd6a4a5abf6d4bab9cab771023cfad5 239 Gene3D G3DSA:3.30.1230.10 31 119 4.4E-18 T 11-10-2018 IPR035931 YlxR-like superfamily AMK58_05250 02a19d2e45c2488830c6c8b4c1101aee 357 Pfam PF13484 4Fe-4S double cluster binding domain 189 253 1.6E-19 T 11-10-2018 AMK58_05250 02a19d2e45c2488830c6c8b4c1101aee 357 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 12 348 4.9E-140 T 11-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 AMK58_05250 02a19d2e45c2488830c6c8b4c1101aee 357 Pfam PF08331 Domain of unknown function (DUF1730) 61 137 5.9E-23 T 11-10-2018 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700 AMK58_05250 02a19d2e45c2488830c6c8b4c1101aee 357 SUPERFAMILY SSF46548 136 253 2.72E-19 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AMK58_05250 02a19d2e45c2488830c6c8b4c1101aee 357 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 5 312 46.874 T 11-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 AMK58_05250 02a19d2e45c2488830c6c8b4c1101aee 357 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 190 201 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMK58_20615 6b3d440657ff84ba7218411fb2476b17 128 SUPERFAMILY SSF52172 1 124 3.42E-31 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_20615 6b3d440657ff84ba7218411fb2476b17 128 SMART SM00448 2 119 3.4E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_20615 6b3d440657ff84ba7218411fb2476b17 128 Pfam PF00072 Response regulator receiver domain 4 119 4.4E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_20615 6b3d440657ff84ba7218411fb2476b17 128 Gene3D G3DSA:3.40.50.12740 1 128 1.8E-32 T 11-10-2018 AMK58_22330 932938d3f8d6f23c98c31c7ea05b4381 329 Gene3D G3DSA:3.10.340.11 13 180 8.7E-112 T 11-10-2018 AMK58_22330 932938d3f8d6f23c98c31c7ea05b4381 329 SUPERFAMILY SSF56199 12 325 9.55E-113 T 11-10-2018 AMK58_22330 932938d3f8d6f23c98c31c7ea05b4381 329 TIGRFAM TIGR03120 one_C_mch: methenyltetrahydromethanopterin cyclohydrolase 12 325 1.0E-114 T 11-10-2018 IPR003209 Methenyltetrahydromethanopterin cyclohydrolase GO:0006730|GO:0018759 KEGG: 00680+3.5.4.27|MetaCyc: PWY-1723|MetaCyc: PWY-7784 AMK58_22330 932938d3f8d6f23c98c31c7ea05b4381 329 Gene3D G3DSA:3.30.1030.10 53 325 8.7E-112 T 11-10-2018 AMK58_22330 932938d3f8d6f23c98c31c7ea05b4381 329 Hamap MF_00486 Methenyltetrahydromethanopterin cyclohydrolase [mch]. 1 329 134.72 T 11-10-2018 IPR003209 Methenyltetrahydromethanopterin cyclohydrolase GO:0006730|GO:0018759 KEGG: 00680+3.5.4.27|MetaCyc: PWY-1723|MetaCyc: PWY-7784 AMK58_22330 932938d3f8d6f23c98c31c7ea05b4381 329 Pfam PF02289 Cyclohydrolase (MCH) 12 325 1.9E-121 T 11-10-2018 IPR003209 Methenyltetrahydromethanopterin cyclohydrolase GO:0006730|GO:0018759 KEGG: 00680+3.5.4.27|MetaCyc: PWY-1723|MetaCyc: PWY-7784 AMK58_22690 965212cb29bec62898f935d2b3408442 250 Pfam PF02754 Cysteine-rich domain 12 92 1.0E-12 T 11-10-2018 IPR004017 Cysteine-rich domain AMK58_22690 965212cb29bec62898f935d2b3408442 250 Pfam PF02754 Cysteine-rich domain 140 224 2.5E-16 T 11-10-2018 IPR004017 Cysteine-rich domain AMK58_04170 b35434e81b944b073f75fab144304081 410 SUPERFAMILY SSF141523 166 321 1.44E-21 T 11-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMK58_04170 b35434e81b944b073f75fab144304081 410 Gene3D G3DSA:2.40.440.10 110 336 4.4E-31 T 11-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMK58_04170 b35434e81b944b073f75fab144304081 410 SUPERFAMILY SSF47090 72 146 1.45E-13 T 11-10-2018 IPR036365 PGBD-like superfamily AMK58_04170 b35434e81b944b073f75fab144304081 410 Pfam PF01471 Putative peptidoglycan binding domain 83 140 1.6E-7 T 11-10-2018 IPR002477 Peptidoglycan binding-like AMK58_04170 b35434e81b944b073f75fab144304081 410 Pfam PF03734 L,D-transpeptidase catalytic domain 168 330 1.1E-25 T 11-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AMK58_13940 30117191a7a35450b1fa5865ca019bdd 114 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 5 108 1.3E-25 T 11-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like AMK58_17655 60f15effb937e5855877907e00d56b12 338 Pfam PF00676 Dehydrogenase E1 component 31 327 1.9E-102 T 11-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 AMK58_17655 60f15effb937e5855877907e00d56b12 338 SUPERFAMILY SSF52518 20 337 3.07E-107 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMK58_17655 60f15effb937e5855877907e00d56b12 338 Gene3D G3DSA:3.40.50.970 2 338 8.5E-137 T 11-10-2018 AMK58_17655 60f15effb937e5855877907e00d56b12 338 TIGRFAM TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 23 335 1.8E-154 T 11-10-2018 IPR017597 Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y GO:0004739|GO:0006086|GO:0043231 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-70268 AMK58_10795 39a9799bd88bd49070fa6eb2a6b86fc8 451 Gene3D G3DSA:3.30.2290.10 2 228 3.2E-75 T 11-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal AMK58_10795 39a9799bd88bd49070fa6eb2a6b86fc8 451 Pfam PF01523 Putative modulator of DNA gyrase 30 320 8.1E-58 T 11-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 AMK58_10795 39a9799bd88bd49070fa6eb2a6b86fc8 451 SUPERFAMILY SSF111283 11 450 8.63E-129 T 11-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 AMK58_27995 74eee64540c2308186d873fad8d3da5a 310 Pfam PF05621 Bacterial TniB protein 25 278 1.4E-91 T 11-10-2018 IPR008868 Bacterial TniB AMK58_27995 74eee64540c2308186d873fad8d3da5a 310 SMART SM00382 58 206 1.8E-4 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_27995 74eee64540c2308186d873fad8d3da5a 310 SUPERFAMILY SSF52540 57 279 3.94E-15 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_27995 74eee64540c2308186d873fad8d3da5a 310 Gene3D G3DSA:3.40.50.300 32 212 1.1E-14 T 11-10-2018 AMK58_00915 2e7cb39dc851f681abbe7a44c77080d4 385 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 285 304 1.4E-22 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AMK58_00915 2e7cb39dc851f681abbe7a44c77080d4 385 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 52 68 1.4E-22 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AMK58_00915 2e7cb39dc851f681abbe7a44c77080d4 385 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 96 110 1.4E-22 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AMK58_00915 2e7cb39dc851f681abbe7a44c77080d4 385 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 147 163 1.4E-22 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AMK58_00915 2e7cb39dc851f681abbe7a44c77080d4 385 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 174 188 1.4E-22 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AMK58_00915 2e7cb39dc851f681abbe7a44c77080d4 385 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 68 89 1.4E-22 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AMK58_00915 2e7cb39dc851f681abbe7a44c77080d4 385 SUPERFAMILY SSF53850 48 382 6.92E-61 T 11-10-2018 AMK58_00915 2e7cb39dc851f681abbe7a44c77080d4 385 Gene3D G3DSA:3.40.190.10 156 292 5.4E-65 T 11-10-2018 AMK58_00915 2e7cb39dc851f681abbe7a44c77080d4 385 Pfam PF13416 Bacterial extracellular solute-binding protein 62 338 1.0E-26 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMK58_00915 2e7cb39dc851f681abbe7a44c77080d4 385 Gene3D G3DSA:3.40.190.10 51 343 5.4E-65 T 11-10-2018 AMK58_16920 38457bfe5443fa5e1075a2ddd8bb8ae8 692 SUPERFAMILY SSF58104 370 685 1.83E-59 T 11-10-2018 AMK58_16920 38457bfe5443fa5e1075a2ddd8bb8ae8 692 Gene3D G3DSA:1.10.287.950 456 688 9.6E-46 T 11-10-2018 AMK58_16920 38457bfe5443fa5e1075a2ddd8bb8ae8 692 Gene3D G3DSA:3.30.450.20 63 211 4.6E-64 T 11-10-2018 AMK58_16920 38457bfe5443fa5e1075a2ddd8bb8ae8 692 Gene3D G3DSA:3.30.450.20 52 309 4.6E-64 T 11-10-2018 AMK58_16920 38457bfe5443fa5e1075a2ddd8bb8ae8 692 SMART SM00283 432 686 8.3E-44 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_16920 38457bfe5443fa5e1075a2ddd8bb8ae8 692 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 496 651 4.4E-29 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_16920 38457bfe5443fa5e1075a2ddd8bb8ae8 692 Gene3D G3DSA:1.20.1480.50 310 401 2.7E-7 T 11-10-2018 AMK58_16920 38457bfe5443fa5e1075a2ddd8bb8ae8 692 Pfam PF02743 Cache domain 51 303 4.0E-18 T 11-10-2018 IPR033479 Double Cache domain 1 AMK58_21440 d8408c16aef4e32d5da2c2b5f19cc943 238 Pfam PF06912 Protein of unknown function (DUF1275) 17 222 9.9E-33 T 11-10-2018 IPR010699 Protein of unknown function DUF1275 AMK58_19735 0f629f491c437bb8c281253f653f1c51 496 SMART SM00345 28 87 8.2E-15 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_19735 0f629f491c437bb8c281253f653f1c51 496 Gene3D G3DSA:3.40.640.10 128 485 5.2E-113 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_19735 0f629f491c437bb8c281253f653f1c51 496 Pfam PF00155 Aminotransferase class I and II 167 408 4.8E-20 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMK58_19735 0f629f491c437bb8c281253f653f1c51 496 Pfam PF00392 Bacterial regulatory proteins, gntR family 26 87 9.9E-16 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_19735 0f629f491c437bb8c281253f653f1c51 496 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 61 5.5E-7 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_19735 0f629f491c437bb8c281253f653f1c51 496 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 61 77 5.5E-7 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_19735 0f629f491c437bb8c281253f653f1c51 496 Gene3D G3DSA:1.10.10.10 15 95 7.0E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_19735 0f629f491c437bb8c281253f653f1c51 496 SUPERFAMILY SSF46785 19 95 6.81E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_19735 0f629f491c437bb8c281253f653f1c51 496 SUPERFAMILY SSF53383 128 491 1.69E-85 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_15255 256f54ed809846dcc5acab553ddf18da 370 Pfam PF02371 Transposase IS116/IS110/IS902 family 223 304 2.6E-24 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AMK58_15255 256f54ed809846dcc5acab553ddf18da 370 Pfam PF01548 Transposase 7 154 9.5E-13 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AMK58_09430 c951ac927cd41dbe5ba4979842ce40d0 327 SUPERFAMILY SSF56112 5 309 2.05E-88 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily AMK58_09430 c951ac927cd41dbe5ba4979842ce40d0 327 Gene3D G3DSA:3.90.1200.10 106 319 2.2E-84 T 11-10-2018 AMK58_09430 c951ac927cd41dbe5ba4979842ce40d0 327 Pfam PF01636 Phosphotransferase enzyme family 28 257 1.3E-39 T 11-10-2018 IPR002575 Aminoglycoside phosphotransferase AMK58_09430 c951ac927cd41dbe5ba4979842ce40d0 327 TIGRFAM TIGR00938 thrB_alt: homoserine kinase 1 307 4.5E-122 T 11-10-2018 IPR005280 Homoserine kinase, type II GO:0004413|GO:0009088 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 AMK58_09430 c951ac927cd41dbe5ba4979842ce40d0 327 Hamap MF_00301 Homoserine kinase [thrB]. 1 326 168.173 T 11-10-2018 IPR005280 Homoserine kinase, type II GO:0004413|GO:0009088 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 AMK58_09430 c951ac927cd41dbe5ba4979842ce40d0 327 Gene3D G3DSA:3.30.200.20 1 104 2.3E-38 T 11-10-2018 AMK58_27240 84538da58607a0c342b328359bd800dd 250 SMART SM00271 198 249 4.0E-9 T 11-10-2018 IPR001623 DnaJ domain AMK58_27240 84538da58607a0c342b328359bd800dd 250 PRINTS PR00625 DnaJ domain signature 201 219 6.8E-5 T 11-10-2018 IPR001623 DnaJ domain AMK58_27240 84538da58607a0c342b328359bd800dd 250 PRINTS PR00625 DnaJ domain signature 219 234 6.8E-5 T 11-10-2018 IPR001623 DnaJ domain AMK58_27240 84538da58607a0c342b328359bd800dd 250 Gene3D G3DSA:1.10.287.110 188 250 7.7E-25 T 11-10-2018 IPR036869 Chaperone J-domain superfamily AMK58_27240 84538da58607a0c342b328359bd800dd 250 Pfam PF00226 DnaJ domain 200 231 2.2E-8 T 11-10-2018 IPR001623 DnaJ domain AMK58_27240 84538da58607a0c342b328359bd800dd 250 SUPERFAMILY SSF46565 194 248 9.94E-17 T 11-10-2018 IPR036869 Chaperone J-domain superfamily AMK58_07825 1604eb7dac312bab60471ffcbd01ba11 277 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 78 266 2.3E-16 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_07825 1604eb7dac312bab60471ffcbd01ba11 277 Gene3D G3DSA:1.10.3720.10 11 267 6.8E-50 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_07825 1604eb7dac312bab60471ffcbd01ba11 277 SUPERFAMILY SSF161098 7 262 6.07E-54 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_02170 12c673b432a586636b3daa43c1474af3 225 Gene3D G3DSA:3.50.30.100 2 196 5.9E-51 T 11-10-2018 AMK58_02170 12c673b432a586636b3daa43c1474af3 225 Pfam PF03737 Aldolase/RraA 30 174 1.9E-35 T 11-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein AMK58_02170 12c673b432a586636b3daa43c1474af3 225 SUPERFAMILY SSF89562 24 185 4.58E-42 T 11-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily AMK58_21985 9a21030b9a537c977b46843ab5a989d8 408 SUPERFAMILY SSF53756 32 401 5.23E-44 T 11-10-2018 AMK58_21985 9a21030b9a537c977b46843ab5a989d8 408 Gene3D G3DSA:3.40.50.2000 29 210 3.0E-8 T 11-10-2018 AMK58_21985 9a21030b9a537c977b46843ab5a989d8 408 Pfam PF00534 Glycosyl transferases group 1 224 371 5.6E-14 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 AMK58_21985 9a21030b9a537c977b46843ab5a989d8 408 Pfam PF13579 Glycosyl transferase 4-like domain 39 204 2.0E-10 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AMK58_21985 9a21030b9a537c977b46843ab5a989d8 408 Gene3D G3DSA:3.40.50.2000 221 386 8.4E-25 T 11-10-2018 AMK58_16830 b987e6fc80879542ea4036058601c870 173 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 2 79 9.4E-23 T 11-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 AMK58_16830 b987e6fc80879542ea4036058601c870 173 Pfam PF02416 mttA/Hcf106 family 5 36 7.6E-5 T 11-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 AMK58_16830 b987e6fc80879542ea4036058601c870 173 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 1 167 15.852 T 11-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 AMK58_16830 b987e6fc80879542ea4036058601c870 173 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 2.2E-13 T 11-10-2018 AMK58_16830 b987e6fc80879542ea4036058601c870 173 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 2.2E-13 T 11-10-2018 AMK58_12990 d4cc2740dd0d8d91443b0a38ca54ab3e 258 Pfam PF00005 ABC transporter 22 167 8.5E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_12990 d4cc2740dd0d8d91443b0a38ca54ab3e 258 Gene3D G3DSA:3.40.50.300 1 256 1.9E-76 T 11-10-2018 AMK58_12990 d4cc2740dd0d8d91443b0a38ca54ab3e 258 SMART SM00382 30 225 4.3E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_12990 d4cc2740dd0d8d91443b0a38ca54ab3e 258 SUPERFAMILY SSF52540 1 228 2.28E-64 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_12990 d4cc2740dd0d8d91443b0a38ca54ab3e 258 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_18855 d542ba350eee33911bcdcbdace2bf29e 367 TIGRFAM TIGR03347 VI_chp_1: type VI secretion protein, VC_A0111 family 33 339 3.9E-85 T 11-10-2018 IPR010732 Type VI secretion, TssG-like AMK58_18855 d542ba350eee33911bcdcbdace2bf29e 367 Pfam PF06996 Type VI secretion, TssG 33 338 3.6E-85 T 11-10-2018 IPR010732 Type VI secretion, TssG-like AMK58_03290 170ee102df5ce8143824ee23c1b1b143 401 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 236 249 - T 11-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 AMK58_03290 170ee102df5ce8143824ee23c1b1b143 401 Pfam PF00155 Aminotransferase class I and II 32 392 3.2E-78 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMK58_03290 170ee102df5ce8143824ee23c1b1b143 401 Gene3D G3DSA:3.90.1150.10 26 392 1.0E-137 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_03290 170ee102df5ce8143824ee23c1b1b143 401 SUPERFAMILY SSF53383 1 398 1.15E-115 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_03290 170ee102df5ce8143824ee23c1b1b143 401 Gene3D G3DSA:3.40.640.10 63 286 1.0E-137 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_17985 79769d312efd4074a8ba96f406d074a8 312 Pfam PF03466 LysR substrate binding domain 88 292 2.9E-48 T 11-10-2018 IPR005119 LysR, substrate-binding AMK58_17985 79769d312efd4074a8ba96f406d074a8 312 Gene3D G3DSA:1.10.10.10 3 89 5.1E-31 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_17985 79769d312efd4074a8ba96f406d074a8 312 Gene3D G3DSA:3.40.190.10 163 264 1.1E-75 T 11-10-2018 AMK58_17985 79769d312efd4074a8ba96f406d074a8 312 Gene3D G3DSA:3.40.190.10 91 290 1.1E-75 T 11-10-2018 AMK58_17985 79769d312efd4074a8ba96f406d074a8 312 SUPERFAMILY SSF53850 90 296 1.5E-51 T 11-10-2018 AMK58_17985 79769d312efd4074a8ba96f406d074a8 312 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.7E-20 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_17985 79769d312efd4074a8ba96f406d074a8 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 2.0E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_17985 79769d312efd4074a8ba96f406d074a8 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 2.0E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_17985 79769d312efd4074a8ba96f406d074a8 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 2.0E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMK58_17985 79769d312efd4074a8ba96f406d074a8 312 SUPERFAMILY SSF46785 4 87 4.15E-24 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_19980 11ce8dffe406e05511b6f417f47cc14b 567 SUPERFAMILY SSF58104 238 560 2.49E-59 T 11-10-2018 AMK58_19980 11ce8dffe406e05511b6f417f47cc14b 567 Gene3D G3DSA:1.10.287.950 275 566 7.3E-53 T 11-10-2018 AMK58_19980 11ce8dffe406e05511b6f417f47cc14b 567 SMART SM00304 217 270 2.1E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_19980 11ce8dffe406e05511b6f417f47cc14b 567 SMART SM00283 307 561 6.6E-40 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_19980 11ce8dffe406e05511b6f417f47cc14b 567 Gene3D G3DSA:1.20.1480.50 176 274 8.4E-13 T 11-10-2018 AMK58_19980 11ce8dffe406e05511b6f417f47cc14b 567 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 368 530 3.7E-32 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_19980 11ce8dffe406e05511b6f417f47cc14b 567 Pfam PF12729 Four helix bundle sensory module for signal transduction 6 188 1.0E-18 T 11-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain AMK58_19980 11ce8dffe406e05511b6f417f47cc14b 567 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 321 350 2.2E-5 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_19980 11ce8dffe406e05511b6f417f47cc14b 567 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 434 463 2.2E-5 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_19980 11ce8dffe406e05511b6f417f47cc14b 567 Pfam PF00672 HAMP domain 219 266 1.8E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_01385 4866bc2100b04ce28e479af8e82b9ee2 144 SUPERFAMILY SSF54593 4 132 2.61E-31 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMK58_01385 4866bc2100b04ce28e479af8e82b9ee2 144 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 8 126 1.4E-11 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMK58_01385 4866bc2100b04ce28e479af8e82b9ee2 144 Gene3D G3DSA:3.10.180.10 2 144 1.9E-59 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMK58_23820 1c9b6599f8007966fd341cf461442593 98 Gene3D G3DSA:3.40.630.30 3 94 1.1E-30 T 11-10-2018 AMK58_23820 1c9b6599f8007966fd341cf461442593 98 Pfam PF14542 GCN5-related N-acetyl-transferase 13 89 7.6E-29 T 11-10-2018 IPR031165 Yjdj-type Gcn5-related N-acetyltransferase AMK58_23820 1c9b6599f8007966fd341cf461442593 98 SUPERFAMILY SSF55729 5 90 1.35E-28 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_13800 749506beff9c5b1484d825a3e661177a 277 Gene3D G3DSA:1.25.40.10 193 275 4.7E-6 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_13800 749506beff9c5b1484d825a3e661177a 277 Pfam PF13369 Transglutaminase-like superfamily 43 195 9.4E-40 T 11-10-2018 IPR032698 Protein SirB1, N-terminal Reactome: R-HSA-8951664|Reactome: R-HSA-983168 AMK58_13800 749506beff9c5b1484d825a3e661177a 277 Pfam PF13371 Tetratricopeptide repeat 198 269 6.5E-16 T 11-10-2018 AMK58_13800 749506beff9c5b1484d825a3e661177a 277 SUPERFAMILY SSF48452 202 274 9.11E-5 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_12740 b919183e9775ff36c6800c2d7aa99658 206 SMART SM00479 2 166 2.7E-20 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AMK58_12740 b919183e9775ff36c6800c2d7aa99658 206 Pfam PF00929 Exonuclease 4 153 2.6E-19 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AMK58_12740 b919183e9775ff36c6800c2d7aa99658 206 SUPERFAMILY SSF53098 3 162 2.88E-41 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMK58_12740 b919183e9775ff36c6800c2d7aa99658 206 Gene3D G3DSA:3.30.420.10 1 163 4.1E-39 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMK58_27590 24ca49e2afba2b245fa3f348b34b5b00 162 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 24 153 3.7E-26 T 11-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ AMK58_05395 f893b007f712f55fee06eb71e072470f 274 SUPERFAMILY SSF51621 10 269 4.49E-100 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMK58_05395 f893b007f712f55fee06eb71e072470f 274 Gene3D G3DSA:3.20.20.60 9 274 3.0E-104 T 11-10-2018 AMK58_05395 f893b007f712f55fee06eb71e072470f 274 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 10 269 42.269 T 11-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 AMK58_05395 f893b007f712f55fee06eb71e072470f 274 Pfam PF02548 Ketopantoate hydroxymethyltransferase 10 264 8.7E-107 T 11-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 AMK58_05395 f893b007f712f55fee06eb71e072470f 274 PIRSF PIRSF000388 1 272 2.8E-103 T 11-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 AMK58_05395 f893b007f712f55fee06eb71e072470f 274 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 12 269 1.7E-98 T 11-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 AMK58_10355 19c086a60f6803c788ac2b887a82de88 258 Pfam PF00189 Ribosomal protein S3, C-terminal domain 119 201 1.3E-39 T 11-10-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10355 19c086a60f6803c788ac2b887a82de88 258 SUPERFAMILY SSF54814 2 105 1.44E-37 T 11-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 AMK58_10355 19c086a60f6803c788ac2b887a82de88 258 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 208 1.6E-93 T 11-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 AMK58_10355 19c086a60f6803c788ac2b887a82de88 258 Gene3D G3DSA:3.30.1140.32 107 207 3.4E-44 T 11-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10355 19c086a60f6803c788ac2b887a82de88 258 Pfam PF07650 KH domain 38 109 1.3E-18 T 11-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10355 19c086a60f6803c788ac2b887a82de88 258 Gene3D G3DSA:3.30.300.20 17 106 2.9E-28 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta AMK58_10355 19c086a60f6803c788ac2b887a82de88 258 ProSitePatterns PS00548 Ribosomal protein S3 signature. 162 196 - T 11-10-2018 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10355 19c086a60f6803c788ac2b887a82de88 258 SMART SM00322 59 124 9.8E-7 T 11-10-2018 IPR004087 K Homology domain GO:0003676 AMK58_10355 19c086a60f6803c788ac2b887a82de88 258 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 205 39.137 T 11-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 AMK58_10355 19c086a60f6803c788ac2b887a82de88 258 SUPERFAMILY SSF54821 107 205 5.89E-40 T 11-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_00205 032c48f1f9c6795149d2337a5bd971ca 424 Gene3D G3DSA:3.40.50.2000 202 390 2.9E-52 T 11-10-2018 AMK58_00205 032c48f1f9c6795149d2337a5bd971ca 424 Pfam PF00534 Glycosyl transferases group 1 223 383 4.8E-31 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 AMK58_00205 032c48f1f9c6795149d2337a5bd971ca 424 Gene3D G3DSA:3.40.50.2000 111 201 2.9E-52 T 11-10-2018 AMK58_00205 032c48f1f9c6795149d2337a5bd971ca 424 SUPERFAMILY SSF53756 15 401 1.62E-60 T 11-10-2018 AMK58_06270 2e1187b9ae3dfa0bae962e2ac26c1018 173 Gene3D G3DSA:1.10.132.20 1 170 6.6E-68 T 11-10-2018 AMK58_06270 2e1187b9ae3dfa0bae962e2ac26c1018 173 Gene3D G3DSA:3.30.1360.40 19 93 6.6E-68 T 11-10-2018 AMK58_06270 2e1187b9ae3dfa0bae962e2ac26c1018 173 Pfam PF01765 Ribosome recycling factor 8 171 8.9E-61 T 11-10-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 AMK58_06270 2e1187b9ae3dfa0bae962e2ac26c1018 173 TIGRFAM TIGR00496 frr: ribosome recycling factor 1 173 2.6E-62 T 11-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 AMK58_06270 2e1187b9ae3dfa0bae962e2ac26c1018 173 SUPERFAMILY SSF55194 1 172 4.97E-65 T 11-10-2018 IPR036191 RRF superfamily Reactome: R-HSA-5419276 AMK58_06270 2e1187b9ae3dfa0bae962e2ac26c1018 173 Hamap MF_00040 Ribosome-recycling factor [frr]. 1 173 22.961 T 11-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 AMK58_17900 d434a675c1262bb4ee3831fd6a3cc324 135 Gene3D G3DSA:2.60.40.790 5 134 1.1E-17 T 11-10-2018 IPR008978 HSP20-like chaperone AMK58_17900 d434a675c1262bb4ee3831fd6a3cc324 135 Pfam PF00011 Hsp20/alpha crystallin family 47 132 3.2E-8 T 11-10-2018 IPR002068 Alpha crystallin/Hsp20 domain AMK58_17900 d434a675c1262bb4ee3831fd6a3cc324 135 SUPERFAMILY SSF49764 26 133 3.14E-20 T 11-10-2018 IPR008978 HSP20-like chaperone AMK58_24670 3408ce8354e39c99932b776e77ff1e3d 379 SUPERFAMILY SSF90123 31 349 3.53E-18 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMK58_24670 3408ce8354e39c99932b776e77ff1e3d 379 Pfam PF06472 ABC transporter transmembrane region 2 12 301 7.4E-32 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMK58_08125 788ab6b9064dd09ec0b53591dae77212 290 Gene3D G3DSA:3.10.180.10 5 154 5.1E-12 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMK58_08125 788ab6b9064dd09ec0b53591dae77212 290 SUPERFAMILY SSF54593 3 254 9.04E-23 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMK58_08125 788ab6b9064dd09ec0b53591dae77212 290 Pfam PF13468 Glyoxalase-like domain 9 189 5.1E-38 T 11-10-2018 IPR025870 Glyoxalase-like domain AMK58_02505 957ff736da893516f0d2ca273013c004 371 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 7 362 9.3E-130 T 11-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 AMK58_02505 957ff736da893516f0d2ca273013c004 371 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 5 366 49.484 T 11-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 AMK58_02505 957ff736da893516f0d2ca273013c004 371 Gene3D G3DSA:3.40.718.10 4 371 1.7E-133 T 11-10-2018 AMK58_02505 957ff736da893516f0d2ca273013c004 371 SUPERFAMILY SSF53659 2 368 1.21E-113 T 11-10-2018 AMK58_02505 957ff736da893516f0d2ca273013c004 371 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 248 267 - T 11-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 AMK58_02505 957ff736da893516f0d2ca273013c004 371 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 7 361 1.8E-143 T 11-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 AMK58_02505 957ff736da893516f0d2ca273013c004 371 SMART SM01329 6 362 1.4E-183 T 11-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 AMK58_23645 10e38819da5458bc01ee80b591944c31 212 Pfam PF04509 CheC-like family 14 49 2.2E-7 T 11-10-2018 IPR007597 CheC-like protein GO:0016787 AMK58_23645 10e38819da5458bc01ee80b591944c31 212 SUPERFAMILY SSF103039 10 204 3.84E-34 T 11-10-2018 IPR028976 CheC-like superfamily AMK58_23645 10e38819da5458bc01ee80b591944c31 212 Gene3D G3DSA:3.40.1550.10 8 205 2.3E-40 T 11-10-2018 IPR028976 CheC-like superfamily AMK58_15825 5fbc986ac762a456d6cf0d1d37857ac1 126 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 17 109 1.3E-21 T 11-10-2018 IPR009241 Toxin HigB-like AMK58_20130 75da25ae4d8db6a4530aa94cea5c70d3 232 Pfam PF02678 Pirin 9 119 1.6E-35 T 11-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 AMK58_20130 75da25ae4d8db6a4530aa94cea5c70d3 232 Gene3D G3DSA:2.60.120.10 133 232 7.5E-37 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_20130 75da25ae4d8db6a4530aa94cea5c70d3 232 SUPERFAMILY SSF51182 1 231 6.19E-78 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily AMK58_20130 75da25ae4d8db6a4530aa94cea5c70d3 232 PIRSF PIRSF006232 1 230 3.9E-55 T 11-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 AMK58_20130 75da25ae4d8db6a4530aa94cea5c70d3 232 Gene3D G3DSA:2.60.120.10 12 132 5.4E-56 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_03475 4450cad33e7ec4de53827f0de15aa8cd 269 PIRSF PIRSF006648 2 259 5.8E-35 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMK58_03475 4450cad33e7ec4de53827f0de15aa8cd 269 Pfam PF01061 ABC-2 type transporter 13 229 1.5E-30 T 11-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 AMK58_03475 4450cad33e7ec4de53827f0de15aa8cd 269 TIGRFAM TIGR03861 phenyl_ABC_PedC: alcohol ABC transporter, permease protein 10 260 3.9E-129 T 11-10-2018 IPR022403 Alcohol ABC transporter, permease protein AMK58_03475 4450cad33e7ec4de53827f0de15aa8cd 269 PRINTS PR00164 ABC-2 type transport system membrane protein signature 146 170 3.8E-8 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMK58_03475 4450cad33e7ec4de53827f0de15aa8cd 269 PRINTS PR00164 ABC-2 type transport system membrane protein signature 29 50 3.8E-8 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMK58_03475 4450cad33e7ec4de53827f0de15aa8cd 269 PRINTS PR00164 ABC-2 type transport system membrane protein signature 183 202 3.8E-8 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMK58_18200 7115fe28672b2cc54cfa04655c2a1e0b 545 Gene3D G3DSA:3.30.300.310 439 543 6.7E-29 T 11-10-2018 AMK58_18200 7115fe28672b2cc54cfa04655c2a1e0b 545 SUPERFAMILY SSF56801 26 539 2.49E-132 T 11-10-2018 AMK58_18200 7115fe28672b2cc54cfa04655c2a1e0b 545 Pfam PF00501 AMP-binding enzyme 50 442 2.1E-78 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMK58_18200 7115fe28672b2cc54cfa04655c2a1e0b 545 Gene3D G3DSA:3.40.50.12780 30 438 4.6E-94 T 11-10-2018 AMK58_18200 7115fe28672b2cc54cfa04655c2a1e0b 545 Pfam PF13193 AMP-binding enzyme C-terminal domain 451 529 1.1E-21 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMK58_18200 7115fe28672b2cc54cfa04655c2a1e0b 545 ProSitePatterns PS00455 Putative AMP-binding domain signature. 196 207 - T 11-10-2018 IPR020845 AMP-binding, conserved site AMK58_26985 1617fc204759e3f5c179bd1dc0e711ea 223 SUPERFAMILY SSF53955 50 199 6.75E-25 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily AMK58_26985 1617fc204759e3f5c179bd1dc0e711ea 223 Gene3D G3DSA:1.10.3810.10 56 207 3.4E-20 T 11-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMK58_26985 1617fc204759e3f5c179bd1dc0e711ea 223 Pfam PF00912 Transglycosylase 60 195 4.5E-19 T 11-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMK58_22520 83e5d7427274f2d9cd43cafe1845bd61 351 SUPERFAMILY SSF53850 47 317 7.09E-39 T 11-10-2018 AMK58_22520 83e5d7427274f2d9cd43cafe1845bd61 351 Gene3D G3DSA:3.40.190.10 56 311 1.6E-41 T 11-10-2018 AMK58_22520 83e5d7427274f2d9cd43cafe1845bd61 351 Pfam PF13531 Bacterial extracellular solute-binding protein 60 306 3.6E-18 T 11-10-2018 AMK58_22520 83e5d7427274f2d9cd43cafe1845bd61 351 Gene3D G3DSA:3.40.190.10 157 267 1.6E-41 T 11-10-2018 AMK58_19365 140f3d7b68b0d9d2e48f5f285ee37a71 141 SUPERFAMILY SSF55620 39 140 4.45E-21 T 11-10-2018 AMK58_19365 140f3d7b68b0d9d2e48f5f285ee37a71 141 Gene3D G3DSA:3.30.1130.10 14 141 3.5E-34 T 11-10-2018 AMK58_19365 140f3d7b68b0d9d2e48f5f285ee37a71 141 Pfam PF02152 Dihydroneopterin aldolase 38 137 6.1E-22 T 11-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AMK58_19365 140f3d7b68b0d9d2e48f5f285ee37a71 141 SMART SM00905 38 138 5.7E-25 T 11-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AMK58_19365 140f3d7b68b0d9d2e48f5f285ee37a71 141 TIGRFAM TIGR00526 folB_dom: FolB domain 39 140 2.7E-14 T 11-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AMK58_05100 38af7d52b87c72e94ecbc4b68d3e70e9 67 Pfam PF13467 Ribbon-helix-helix domain 1 62 5.9E-26 T 11-10-2018 IPR027373 Ribbon-helix-helix domain AMK58_05100 38af7d52b87c72e94ecbc4b68d3e70e9 67 Gene3D G3DSA:1.10.3990.20 1 66 1.5E-15 T 11-10-2018 IPR038268 Ribbon-helix-helix domain superfamily AMK58_28510 432f2552b0a53ada3fc55414ec9624d1 453 Pfam PF12801 4Fe-4S binding domain 63 100 1.3E-8 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMK58_28510 432f2552b0a53ada3fc55414ec9624d1 453 Pfam PF12801 4Fe-4S binding domain 145 181 4.8E-5 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMK58_17335 c529e3e6b4eb5c37c060d174e88bfcf2 433 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 11 423 1.0E-86 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit AMK58_17335 c529e3e6b4eb5c37c060d174e88bfcf2 433 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 21 428 2.7E-112 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 AMK58_17335 c529e3e6b4eb5c37c060d174e88bfcf2 433 PIRSF PIRSF006066 5 433 6.3E-92 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 AMK58_28060 9d1b68350efe98a21c12dcb441d90b5e 139 Pfam PF03061 Thioesterase superfamily 40 126 9.0E-9 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AMK58_28060 9d1b68350efe98a21c12dcb441d90b5e 139 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 10 132 1.8E-10 T 11-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 AMK58_28060 9d1b68350efe98a21c12dcb441d90b5e 139 Gene3D G3DSA:3.10.129.10 2 137 1.5E-34 T 11-10-2018 AMK58_28060 9d1b68350efe98a21c12dcb441d90b5e 139 SUPERFAMILY SSF54637 9 134 7.68E-26 T 11-10-2018 IPR029069 HotDog domain superfamily AMK58_05435 e7a0d07261a4025978b9c33c1a55b83c 134 Pfam PF06170 Protein of unknown function (DUF983) 41 124 2.1E-30 T 11-10-2018 IPR009325 Protein of unknown function DUF983 AMK58_26270 4c7c5fc8d0fcd7ce7b4134469a55e704 365 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 211 229 1.4E-40 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AMK58_26270 4c7c5fc8d0fcd7ce7b4134469a55e704 365 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 11 33 1.4E-40 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AMK58_26270 4c7c5fc8d0fcd7ce7b4134469a55e704 365 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 231 248 1.4E-40 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AMK58_26270 4c7c5fc8d0fcd7ce7b4134469a55e704 365 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 275 290 1.4E-40 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AMK58_26270 4c7c5fc8d0fcd7ce7b4134469a55e704 365 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 305 326 1.4E-40 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AMK58_26270 4c7c5fc8d0fcd7ce7b4134469a55e704 365 Gene3D G3DSA:3.40.1690.10 221 359 3.8E-55 T 11-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal AMK58_26270 4c7c5fc8d0fcd7ce7b4134469a55e704 365 SUPERFAMILY SSF160544 255 355 1.14E-39 T 11-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal AMK58_26270 4c7c5fc8d0fcd7ce7b4134469a55e704 365 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 8 355 4.8E-105 T 11-10-2018 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 AMK58_26270 4c7c5fc8d0fcd7ce7b4134469a55e704 365 Pfam PF01312 FlhB HrpN YscU SpaS Family 8 350 1.0E-112 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AMK58_00690 d470cf281669f2f76eb438fad007200d 274 Pfam PF13444 Acetyltransferase (GNAT) domain 36 143 3.9E-32 T 11-10-2018 AMK58_00690 d470cf281669f2f76eb438fad007200d 274 SUPERFAMILY SSF55729 19 240 5.74E-39 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_00690 d470cf281669f2f76eb438fad007200d 274 Gene3D G3DSA:3.40.630.30 20 166 2.7E-18 T 11-10-2018 AMK58_01505 df70606f4d24bb8ab1c5ad0eeb8fac55 345 Pfam PF00892 EamA-like transporter family 152 282 8.6E-10 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_01505 df70606f4d24bb8ab1c5ad0eeb8fac55 345 Pfam PF00892 EamA-like transporter family 4 141 4.6E-23 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_01505 df70606f4d24bb8ab1c5ad0eeb8fac55 345 SUPERFAMILY SSF103481 60 145 4.18E-14 T 11-10-2018 AMK58_01505 df70606f4d24bb8ab1c5ad0eeb8fac55 345 SUPERFAMILY SSF103481 196 287 1.7E-10 T 11-10-2018 AMK58_20290 50b98f4ac8cc37c4d629e6da14b24a98 420 SUPERFAMILY SSF161098 192 404 3.14E-43 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_20290 50b98f4ac8cc37c4d629e6da14b24a98 420 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 232 405 4.5E-8 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_20290 50b98f4ac8cc37c4d629e6da14b24a98 420 Gene3D G3DSA:1.10.3720.10 161 418 5.9E-48 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_09475 5a85f5db344d84ddba9910725d46b1e6 470 Gene3D G3DSA:3.40.50.1100 96 431 5.5E-150 T 11-10-2018 AMK58_09475 5a85f5db344d84ddba9910725d46b1e6 470 SUPERFAMILY SSF53686 2 461 3.78E-161 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMK58_09475 5a85f5db344d84ddba9910725d46b1e6 470 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 94 400 8.4E-20 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AMK58_09475 5a85f5db344d84ddba9910725d46b1e6 470 Gene3D G3DSA:3.40.50.1100 108 444 5.5E-150 T 11-10-2018 AMK58_09475 5a85f5db344d84ddba9910725d46b1e6 470 TIGRFAM TIGR00260 thrC: threonine synthase 69 427 1.6E-79 T 11-10-2018 IPR004450 Threonine synthase-like AMK58_09475 5a85f5db344d84ddba9910725d46b1e6 470 Pfam PF14821 Threonine synthase N terminus 2 80 1.6E-27 T 11-10-2018 IPR029144 Threonine synthase, N-terminal AMK58_09475 5a85f5db344d84ddba9910725d46b1e6 470 Gene3D G3DSA:3.90.1380.10 1 86 4.7E-29 T 11-10-2018 IPR037158 Threonine synthase, N-terminal domain superfamily AMK58_09475 5a85f5db344d84ddba9910725d46b1e6 470 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 102 116 - T 11-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 AMK58_14145 5785d751aed79858a2b8dbd00b5fee09 67 Pfam PF04328 Selenoprotein, putative 8 67 8.9E-24 T 11-10-2018 IPR007423 Selenoprotein, putative AMK58_25555 04faf8b255a968917615cc0c9329e65f 352 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 56 265 3.2E-11 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMK58_25555 04faf8b255a968917615cc0c9329e65f 352 Gene3D G3DSA:2.40.30.170 41 272 5.6E-57 T 11-10-2018 AMK58_25555 04faf8b255a968917615cc0c9329e65f 352 Gene3D G3DSA:2.40.420.20 273 344 5.6E-57 T 11-10-2018 AMK58_25555 04faf8b255a968917615cc0c9329e65f 352 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 27 346 6.4E-61 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMK58_25555 04faf8b255a968917615cc0c9329e65f 352 SUPERFAMILY SSF111369 44 269 2.62E-13 T 11-10-2018 AMK58_25555 04faf8b255a968917615cc0c9329e65f 352 Gene3D G3DSA:1.10.287.470 85 157 5.6E-57 T 11-10-2018 AMK58_25555 04faf8b255a968917615cc0c9329e65f 352 Gene3D G3DSA:2.40.50.100 51 197 5.6E-57 T 11-10-2018 AMK58_04860 3f974a1afe28dc7615aef0bc30bf2cb1 215 SUPERFAMILY SSF52540 4 213 2.34E-37 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_04860 3f974a1afe28dc7615aef0bc30bf2cb1 215 PIRSF PIRSF009320 3 215 5.7E-48 T 11-10-2018 AMK58_04860 3f974a1afe28dc7615aef0bc30bf2cb1 215 Gene3D G3DSA:3.40.50.300 5 214 2.4E-44 T 11-10-2018 AMK58_04860 3f974a1afe28dc7615aef0bc30bf2cb1 215 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 7 147 3.9E-12 T 11-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain AMK58_00970 82fa897faeb7dfc34764a71d9464b353 402 Gene3D G3DSA:3.30.750.80 84 188 4.9E-32 T 11-10-2018 AMK58_00970 82fa897faeb7dfc34764a71d9464b353 402 SUPERFAMILY SSF88697 13 80 2.73E-11 T 11-10-2018 IPR015947 PUA-like superfamily AMK58_00970 82fa897faeb7dfc34764a71d9464b353 402 SUPERFAMILY SSF53335 92 398 7.33E-67 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_00970 82fa897faeb7dfc34764a71d9464b353 402 Gene3D G3DSA:3.40.50.150 189 402 5.7E-65 T 11-10-2018 AMK58_00970 82fa897faeb7dfc34764a71d9464b353 402 Gene3D G3DSA:2.30.130.10 13 82 1.3E-19 T 11-10-2018 IPR036974 PUA domain superfamily GO:0003723 AMK58_00970 82fa897faeb7dfc34764a71d9464b353 402 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 179 361 2.5E-18 T 11-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 AMK58_27245 b17bfac20e7351556a890898805100b6 248 SUPERFAMILY SSF53300 38 203 1.33E-8 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMK58_09890 f47a7ebccde46a3af7b26c3625a36321 302 Pfam PF08009 CDP-alcohol phosphatidyltransferase 2 214 250 9.0E-14 T 11-10-2018 IPR012616 CDP-alcohol phosphatidyltransferase, C-terminal AMK58_09890 f47a7ebccde46a3af7b26c3625a36321 302 Pfam PF01066 CDP-alcohol phosphatidyltransferase 32 95 2.4E-15 T 11-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMK58_09890 f47a7ebccde46a3af7b26c3625a36321 302 TIGRFAM TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase 37 199 2.5E-32 T 11-10-2018 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase KEGG: 00260+2.7.8.8|KEGG: 00564+2.7.8.8|MetaCyc: PWY-5669 AMK58_09890 f47a7ebccde46a3af7b26c3625a36321 302 Gene3D G3DSA:1.20.120.1760 13 146 2.9E-18 T 11-10-2018 AMK58_09890 f47a7ebccde46a3af7b26c3625a36321 302 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 73 95 - T 11-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMK58_06655 a2a59a45216702fe905b584fe12c6390 483 Pfam PF13454 FAD-NAD(P)-binding 11 163 2.0E-38 T 11-10-2018 IPR038732 FAD-dependent urate hydroxylase HpyO, FAD/NAD(P)-binding domain AMK58_06655 a2a59a45216702fe905b584fe12c6390 483 SUPERFAMILY SSF51905 6 259 1.23E-17 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_23565 09d8f5dccdd7cc8046b705b600c1d041 444 Gene3D G3DSA:3.20.20.80 2 443 1.3E-159 T 11-10-2018 AMK58_23565 09d8f5dccdd7cc8046b705b600c1d041 444 Pfam PF00232 Glycosyl hydrolase family 1 5 438 3.1E-140 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMK58_23565 09d8f5dccdd7cc8046b705b600c1d041 444 PRINTS PR00131 Glycosyl hydrolase family 1 signature 386 403 7.9E-19 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMK58_23565 09d8f5dccdd7cc8046b705b600c1d041 444 PRINTS PR00131 Glycosyl hydrolase family 1 signature 282 296 7.9E-19 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMK58_23565 09d8f5dccdd7cc8046b705b600c1d041 444 PRINTS PR00131 Glycosyl hydrolase family 1 signature 365 376 7.9E-19 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMK58_23565 09d8f5dccdd7cc8046b705b600c1d041 444 PRINTS PR00131 Glycosyl hydrolase family 1 signature 410 422 7.9E-19 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMK58_23565 09d8f5dccdd7cc8046b705b600c1d041 444 PRINTS PR00131 Glycosyl hydrolase family 1 signature 344 352 7.9E-19 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMK58_23565 09d8f5dccdd7cc8046b705b600c1d041 444 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 10 24 - T 11-10-2018 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site AMK58_23565 09d8f5dccdd7cc8046b705b600c1d041 444 SUPERFAMILY SSF51445 3 437 7.05E-152 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily AMK58_23565 09d8f5dccdd7cc8046b705b600c1d041 444 TIGRFAM TIGR03356 BGL: beta-galactosidase 6 431 6.7E-173 T 11-10-2018 IPR017736 Glycoside hydrolase, family 1, beta-glucosidase GO:0008422|GO:0030245 KEGG: 00460+3.2.1.21|KEGG: 00500+3.2.1.21|KEGG: 00940+3.2.1.21|MetaCyc: PWY-3121|MetaCyc: PWY-5176|MetaCyc: PWY-6002|MetaCyc: PWY-6788|MetaCyc: PWY-7091|MetaCyc: PWY-7092|MetaCyc: PWY-7913 AMK58_24505 592389006d564418d485a1760dbf4912 123 SUPERFAMILY SSF82093 43 108 7.59E-5 T 11-10-2018 IPR036127 CcmE-like superfamily GO:0005886|GO:0017003|GO:0017004 AMK58_14375 047ea3e64c4cf8eb1ef7abb4ebc63945 656 Gene3D G3DSA:3.10.310.70 121 233 3.4E-86 T 11-10-2018 AMK58_14375 047ea3e64c4cf8eb1ef7abb4ebc63945 656 Gene3D G3DSA:3.20.20.140 102 533 3.4E-86 T 11-10-2018 AMK58_14375 047ea3e64c4cf8eb1ef7abb4ebc63945 656 SUPERFAMILY SSF51338 41 576 8.64E-20 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMK58_14375 047ea3e64c4cf8eb1ef7abb4ebc63945 656 Pfam PF07969 Amidohydrolase family 91 574 1.1E-117 T 11-10-2018 IPR013108 Amidohydrolase 3 AMK58_14375 047ea3e64c4cf8eb1ef7abb4ebc63945 656 SUPERFAMILY SSF51556 101 534 1.64E-43 T 11-10-2018 IPR032466 Metal-dependent hydrolase AMK58_14375 047ea3e64c4cf8eb1ef7abb4ebc63945 656 Gene3D G3DSA:2.30.40.10 49 549 3.4E-86 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMK58_13910 b790f6c639f3c69a9ede41e76523ac9b 624 SMART SM00240 534 583 0.0011 T 11-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 AMK58_13910 b790f6c639f3c69a9ede41e76523ac9b 624 Gene3D G3DSA:2.60.200.20 502 613 2.5E-15 T 11-10-2018 AMK58_13910 b790f6c639f3c69a9ede41e76523ac9b 624 Pfam PF00498 FHA domain 536 606 7.2E-11 T 11-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 AMK58_13910 b790f6c639f3c69a9ede41e76523ac9b 624 SUPERFAMILY SSF49879 525 608 5.74E-16 T 11-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 AMK58_02385 a06e892dfafa269cf378641486033d66 208 Hamap MF_01440 Chemoreceptor glutamine deamidase CheD [cheD]. 24 177 28.036 T 11-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 AMK58_02385 a06e892dfafa269cf378641486033d66 208 Pfam PF03975 CheD chemotactic sensory transduction 71 172 2.6E-28 T 11-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 AMK58_02385 a06e892dfafa269cf378641486033d66 208 SUPERFAMILY SSF64438 28 176 3.11E-46 T 11-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic AMK58_02385 a06e892dfafa269cf378641486033d66 208 Gene3D G3DSA:3.30.1330.200 25 182 5.1E-47 T 11-10-2018 IPR038592 CheD-like superfamily AMK58_14695 c06ecd72c8b0bc069223eeddaa03e9b9 215 ProSitePatterns PS00194 Thioredoxin family active site. 85 103 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AMK58_14695 c06ecd72c8b0bc069223eeddaa03e9b9 215 SUPERFAMILY SSF52833 7 196 1.66E-35 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_14695 c06ecd72c8b0bc069223eeddaa03e9b9 215 Gene3D G3DSA:3.40.30.10 44 199 2.9E-40 T 11-10-2018 AMK58_14695 c06ecd72c8b0bc069223eeddaa03e9b9 215 Pfam PF08534 Redoxin 61 184 3.7E-17 T 11-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 AMK58_19075 99805ff30f02f52f6d4bb0a18ec9d1c4 434 TIGRFAM TIGR00857 pyrC_multi: dihydroorotase, multifunctional complex type 25 430 3.1E-108 T 11-10-2018 AMK58_19075 99805ff30f02f52f6d4bb0a18ec9d1c4 434 Hamap MF_00220_B Dihydroorotase [pyrC]. 8 432 38.967 T 11-10-2018 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMK58_19075 99805ff30f02f52f6d4bb0a18ec9d1c4 434 Pfam PF01979 Amidohydrolase family 62 429 6.4E-22 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AMK58_19075 99805ff30f02f52f6d4bb0a18ec9d1c4 434 SUPERFAMILY SSF51556 64 373 2.75E-99 T 11-10-2018 IPR032466 Metal-dependent hydrolase AMK58_19075 99805ff30f02f52f6d4bb0a18ec9d1c4 434 Gene3D G3DSA:2.30.40.10 14 429 6.8E-127 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMK58_19075 99805ff30f02f52f6d4bb0a18ec9d1c4 434 SUPERFAMILY SSF51338 10 431 1.25E-23 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMK58_19075 99805ff30f02f52f6d4bb0a18ec9d1c4 434 Gene3D G3DSA:3.20.20.140 65 376 6.8E-127 T 11-10-2018 AMK58_14090 242d94fa184e9f5e2e3267a978e9bf64 265 Gene3D G3DSA:3.90.226.10 6 207 5.2E-69 T 11-10-2018 AMK58_14090 242d94fa184e9f5e2e3267a978e9bf64 265 SUPERFAMILY SSF52096 13 264 5.14E-86 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMK58_14090 242d94fa184e9f5e2e3267a978e9bf64 265 Gene3D G3DSA:1.10.12.10 208 265 4.2E-16 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal AMK58_14090 242d94fa184e9f5e2e3267a978e9bf64 265 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 106 126 - T 11-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 AMK58_14090 242d94fa184e9f5e2e3267a978e9bf64 265 Pfam PF00378 Enoyl-CoA hydratase/isomerase 22 263 1.4E-64 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMK58_14545 2dd504cf81ff0e139c32d374b48defbf 227 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 64 113 9.6E-10 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMK58_14545 2dd504cf81ff0e139c32d374b48defbf 227 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 98 106 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AMK58_14545 2dd504cf81ff0e139c32d374b48defbf 227 SUPERFAMILY SSF54292 61 137 8.0E-27 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMK58_14545 2dd504cf81ff0e139c32d374b48defbf 227 Pfam PF01799 [2Fe-2S] binding domain 132 219 2.0E-29 T 11-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMK58_14545 2dd504cf81ff0e139c32d374b48defbf 227 Gene3D G3DSA:1.10.150.120 136 226 5.9E-35 T 11-10-2018 AMK58_14545 2dd504cf81ff0e139c32d374b48defbf 227 Gene3D G3DSA:3.10.20.30 52 135 5.1E-33 T 11-10-2018 IPR012675 Beta-grasp domain superfamily AMK58_14545 2dd504cf81ff0e139c32d374b48defbf 227 SUPERFAMILY SSF47741 143 224 5.23E-28 T 11-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily AMK58_25095 d974313efac132fc17f97773d630450f 213 Pfam PF09476 Pilus biogenesis CpaD protein (pilus_cpaD) 8 185 1.5E-30 T 11-10-2018 IPR019027 Pilus biogenesis CpaD-related AMK58_26580 07aefde9df10d9f12908c3c73eb6620e 371 Pfam PF01594 AI-2E family transporter 27 344 1.6E-41 T 11-10-2018 IPR002549 Transmembrane protein TqsA-like AMK58_09780 ca97d5d29a06cfa508d01d2c46b2cd18 883 Gene3D G3DSA:3.90.550.10 417 639 9.8E-59 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_09780 ca97d5d29a06cfa508d01d2c46b2cd18 883 Gene3D G3DSA:3.20.20.80 113 309 9.4E-10 T 11-10-2018 AMK58_09780 ca97d5d29a06cfa508d01d2c46b2cd18 883 SUPERFAMILY SSF51445 43 308 2.61E-41 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily AMK58_09780 ca97d5d29a06cfa508d01d2c46b2cd18 883 SUPERFAMILY SSF53448 415 669 4.01E-48 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_09780 ca97d5d29a06cfa508d01d2c46b2cd18 883 Pfam PF13641 Glycosyltransferase like family 2 427 655 5.9E-31 T 11-10-2018 AMK58_20665 b470dbb1025ff9108cdb02d57af362d1 170 Gene3D G3DSA:3.30.300.20 3 157 2.0E-35 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta AMK58_20665 b470dbb1025ff9108cdb02d57af362d1 170 SUPERFAMILY SSF82784 8 167 9.03E-35 T 11-10-2018 IPR036102 OsmC/Ohr superfamily AMK58_20665 b470dbb1025ff9108cdb02d57af362d1 170 Pfam PF02566 OsmC-like protein 62 164 4.8E-17 T 11-10-2018 IPR003718 OsmC/Ohr family AMK58_24105 454fec9bbb82f012df8cdf0c0a66ab23 286 Gene3D G3DSA:2.50.20.10 56 263 3.9E-10 T 11-10-2018 AMK58_24105 454fec9bbb82f012df8cdf0c0a66ab23 286 Pfam PF09865 Predicted periplasmic protein (DUF2092) 54 265 4.8E-71 T 11-10-2018 IPR019207 Protein of unknown function DUF2092, periplasmic AMK58_24105 454fec9bbb82f012df8cdf0c0a66ab23 286 SUPERFAMILY SSF89392 58 263 9.02E-12 T 11-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX AMK58_22595 c8bbaa3da94de3422bb20b7fc762d9b0 228 Gene3D G3DSA:3.90.1340.10 1 59 7.9E-8 T 11-10-2018 IPR037053 Phage tail collar domain superfamily AMK58_22595 c8bbaa3da94de3422bb20b7fc762d9b0 228 SUPERFAMILY SSF88874 2 218 2.35E-20 T 11-10-2018 AMK58_22595 c8bbaa3da94de3422bb20b7fc762d9b0 228 Pfam PF07484 Phage Tail Collar Domain 6 62 1.2E-13 T 11-10-2018 IPR011083 Phage tail collar domain AMK58_15845 f572519f65d2859c615bd6d0f7acb3ad 438 ProSitePatterns PS00216 Sugar transport proteins signature 1. 294 310 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMK58_15845 f572519f65d2859c615bd6d0f7acb3ad 438 Gene3D G3DSA:1.20.1250.20 27 202 1.2E-14 T 11-10-2018 AMK58_15845 f572519f65d2859c615bd6d0f7acb3ad 438 SUPERFAMILY SSF103473 28 421 1.29E-43 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_15845 f572519f65d2859c615bd6d0f7acb3ad 438 Pfam PF07690 Major Facilitator Superfamily 244 426 3.7E-17 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMK58_15845 f572519f65d2859c615bd6d0f7acb3ad 438 Gene3D G3DSA:1.20.1250.20 240 435 3.7E-22 T 11-10-2018 AMK58_14085 423d7c2c4788521ef5c7a47a8474477a 394 SUPERFAMILY SSF56529 167 370 1.7E-23 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AMK58_14085 423d7c2c4788521ef5c7a47a8474477a 394 Gene3D G3DSA:3.90.850.10 155 371 3.9E-39 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AMK58_16985 109640b511422420ebe37318ed1e0e1d 182 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 7 163 4.8E-56 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AMK58_16985 109640b511422420ebe37318ed1e0e1d 182 Gene3D G3DSA:3.40.50.620 2 170 4.4E-52 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_16985 109640b511422420ebe37318ed1e0e1d 182 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 6 59 1.1E-18 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AMK58_16985 109640b511422420ebe37318ed1e0e1d 182 SUPERFAMILY SSF52374 4 162 4.02E-40 T 11-10-2018 AMK58_16985 109640b511422420ebe37318ed1e0e1d 182 Pfam PF01467 Cytidylyltransferase-like 8 138 4.0E-17 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AMK58_16985 109640b511422420ebe37318ed1e0e1d 182 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 119 141 1.0E-34 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AMK58_16985 109640b511422420ebe37318ed1e0e1d 182 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 23 44 1.0E-34 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AMK58_16985 109640b511422420ebe37318ed1e0e1d 182 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 5 23 1.0E-34 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AMK58_16985 109640b511422420ebe37318ed1e0e1d 182 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 92 108 1.0E-34 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AMK58_16985 109640b511422420ebe37318ed1e0e1d 182 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 5 165 33.499 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AMK58_06565 3054f341ac73e9f0ba9c63e1af08a60f 85 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 8 77 3.7E-22 T 11-10-2018 IPR001543 Surface presentation of antigen (SpoA) AMK58_06565 3054f341ac73e9f0ba9c63e1af08a60f 85 PRINTS PR00956 Flagellar motor switch protein FliN signature 53 68 2.9E-18 T 11-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 AMK58_06565 3054f341ac73e9f0ba9c63e1af08a60f 85 PRINTS PR00956 Flagellar motor switch protein FliN signature 40 53 2.9E-18 T 11-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 AMK58_06565 3054f341ac73e9f0ba9c63e1af08a60f 85 PRINTS PR00956 Flagellar motor switch protein FliN signature 7 23 2.9E-18 T 11-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 AMK58_06565 3054f341ac73e9f0ba9c63e1af08a60f 85 PRINTS PR00956 Flagellar motor switch protein FliN signature 24 40 2.9E-18 T 11-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 AMK58_06565 3054f341ac73e9f0ba9c63e1af08a60f 85 SUPERFAMILY SSF101801 7 82 3.53E-21 T 11-10-2018 IPR036429 SpoA-like superfamily AMK58_06565 3054f341ac73e9f0ba9c63e1af08a60f 85 Gene3D G3DSA:2.30.330.10 2 85 2.3E-25 T 11-10-2018 IPR036429 SpoA-like superfamily AMK58_06565 3054f341ac73e9f0ba9c63e1af08a60f 85 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 7 79 1.6E-27 T 11-10-2018 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 AMK58_14080 e32e47edb7dc1b35a481cab02216741c 521 SUPERFAMILY SSF53720 14 514 3.93E-102 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMK58_14080 e32e47edb7dc1b35a481cab02216741c 521 Pfam PF00171 Aldehyde dehydrogenase family 13 454 9.3E-43 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMK58_14080 e32e47edb7dc1b35a481cab02216741c 521 Gene3D G3DSA:3.40.605.10 38 516 1.0E-208 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMK58_14080 e32e47edb7dc1b35a481cab02216741c 521 Gene3D G3DSA:3.40.309.10 263 451 1.0E-208 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMK58_25335 d6d27275fc436252a3fad672229cc337 97 Pfam PF03927 NapD protein 4 78 3.9E-24 T 11-10-2018 IPR005623 Chaperone NapD, nitrate reductase assembly AMK58_25335 d6d27275fc436252a3fad672229cc337 97 Gene3D G3DSA:3.30.70.920 4 72 1.7E-16 T 11-10-2018 AMK58_25335 d6d27275fc436252a3fad672229cc337 97 Hamap MF_02200 Chaperone NapD [napD]. 4 79 17.827 T 11-10-2018 IPR005623 Chaperone NapD, nitrate reductase assembly AMK58_17440 86b664f25a4896f963320df533697e61 134 SMART SM00448 10 123 7.1E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_17440 86b664f25a4896f963320df533697e61 134 Pfam PF00072 Response regulator receiver domain 12 123 1.9E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_17440 86b664f25a4896f963320df533697e61 134 Gene3D G3DSA:3.40.50.12740 9 133 2.3E-34 T 11-10-2018 AMK58_17440 86b664f25a4896f963320df533697e61 134 SUPERFAMILY SSF52172 10 128 6.4E-35 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_18745 f6c80b93b9b0ae707ecec0bfc010cc07 243 Pfam PF04402 Protein of unknown function (DUF541) 39 207 1.2E-17 T 11-10-2018 IPR007497 Protein of unknown function DUF541 AMK58_18745 f6c80b93b9b0ae707ecec0bfc010cc07 243 PIRSF PIRSF029033 2 243 1.4E-55 T 11-10-2018 IPR016907 Uncharacterised conserved protein UCP029033, periplasmic protein AMK58_02635 e20ee0684b0c09baebf27d77c574bf98 563 SMART SM00283 303 557 5.6E-46 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_02635 e20ee0684b0c09baebf27d77c574bf98 563 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 364 528 1.7E-30 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_02635 e20ee0684b0c09baebf27d77c574bf98 563 SUPERFAMILY SSF58104 243 556 5.1E-65 T 11-10-2018 AMK58_02635 e20ee0684b0c09baebf27d77c574bf98 563 Pfam PF12729 Four helix bundle sensory module for signal transduction 7 187 1.5E-25 T 11-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain AMK58_02635 e20ee0684b0c09baebf27d77c574bf98 563 Gene3D G3DSA:1.10.8.500 214 265 2.2E-14 T 11-10-2018 AMK58_02635 e20ee0684b0c09baebf27d77c574bf98 563 SMART SM00304 214 267 6.6E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_02635 e20ee0684b0c09baebf27d77c574bf98 563 Gene3D G3DSA:1.10.287.950 271 557 1.7E-54 T 11-10-2018 AMK58_01515 78a3cd8d7a6537bce0c2ffc0074aa8ab 234 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 219 6.9E-19 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_01515 78a3cd8d7a6537bce0c2ffc0074aa8ab 234 Gene3D G3DSA:1.10.3720.10 11 231 9.0E-41 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_01515 78a3cd8d7a6537bce0c2ffc0074aa8ab 234 SUPERFAMILY SSF161098 14 213 6.93E-36 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_01515 78a3cd8d7a6537bce0c2ffc0074aa8ab 234 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 15 122 3.2E-17 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMK58_25530 5d83ebaa724354feaf298ee791bd86b2 196 SUPERFAMILY SSF54909 93 182 5.37E-12 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel AMK58_25530 5d83ebaa724354feaf298ee791bd86b2 196 SUPERFAMILY SSF54909 8 72 1.7E-5 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel AMK58_25530 5d83ebaa724354feaf298ee791bd86b2 196 Pfam PF03992 Antibiotic biosynthesis monooxygenase 93 168 1.8E-5 T 11-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain AMK58_25530 5d83ebaa724354feaf298ee791bd86b2 196 Gene3D G3DSA:3.30.70.100 88 176 1.2E-15 T 11-10-2018 AMK58_25530 5d83ebaa724354feaf298ee791bd86b2 196 Gene3D G3DSA:3.30.70.100 2 84 1.9E-7 T 11-10-2018 AMK58_08770 c6368be0b49faa5bb8f330932ab55bfb 364 Gene3D G3DSA:3.20.20.70 3 360 1.8E-110 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_08770 c6368be0b49faa5bb8f330932ab55bfb 364 Pfam PF03060 Nitronate monooxygenase 14 351 1.1E-88 T 11-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 AMK58_08770 c6368be0b49faa5bb8f330932ab55bfb 364 SUPERFAMILY SSF51412 3 359 3.66E-64 T 11-10-2018 AMK58_03005 a2f033c37d78cfa38d113c2dcef6311d 125 Gene3D G3DSA:3.20.170.20 4 116 4.3E-38 T 11-10-2018 AMK58_03005 a2f033c37d78cfa38d113c2dcef6311d 125 Pfam PF06108 Protein of unknown function (DUF952) 10 97 2.6E-31 T 11-10-2018 IPR009297 Protein of unknown function DUF952 AMK58_03005 a2f033c37d78cfa38d113c2dcef6311d 125 SUPERFAMILY SSF56399 5 113 8.06E-37 T 11-10-2018 AMK58_09955 b7029cf623eb7d747b5735f4460cf1c6 159 Pfam PF06146 Phosphate-starvation-inducible E 69 114 5.3E-8 T 11-10-2018 IPR020948 Phosphate-starvation-induced PsiE-like AMK58_07225 16cb7dc1eab3286eebd28cae22cf6632 322 ProSitePatterns PS01125 ROK family signature. 141 168 - T 11-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 AMK58_07225 16cb7dc1eab3286eebd28cae22cf6632 322 Gene3D G3DSA:3.30.420.40 130 297 4.3E-80 T 11-10-2018 AMK58_07225 16cb7dc1eab3286eebd28cae22cf6632 322 Gene3D G3DSA:3.30.420.40 14 304 4.3E-80 T 11-10-2018 AMK58_07225 16cb7dc1eab3286eebd28cae22cf6632 322 Pfam PF00480 ROK family 13 308 6.0E-74 T 11-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 AMK58_07225 16cb7dc1eab3286eebd28cae22cf6632 322 SUPERFAMILY SSF53067 13 308 2.59E-61 T 11-10-2018 AMK58_18435 6ca47f78412f19abe76064367408af53 141 SUPERFAMILY SSF47188 2 130 8.37E-33 T 11-10-2018 IPR035938 Hemerythrin-like superfamily AMK58_18435 6ca47f78412f19abe76064367408af53 141 Gene3D G3DSA:1.20.120.50 1 134 3.1E-35 T 11-10-2018 IPR035938 Hemerythrin-like superfamily AMK58_18435 6ca47f78412f19abe76064367408af53 141 ProSitePatterns PS00550 Hemerythrin family signature. 58 81 - T 11-10-2018 IPR016131 Haemerythrin, iron-binding site GO:0046872 AMK58_18435 6ca47f78412f19abe76064367408af53 141 Pfam PF01814 Hemerythrin HHE cation binding domain 13 128 1.3E-10 T 11-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 AMK58_18435 6ca47f78412f19abe76064367408af53 141 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 5 129 1.6E-33 T 11-10-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 AMK58_26160 a2baab2786817cd96947d6fe361b67c9 253 Pfam PF07729 FCD domain 110 229 3.5E-29 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_26160 a2baab2786817cd96947d6fe361b67c9 253 SMART SM00895 106 230 1.7E-18 T 11-10-2018 IPR011711 GntR, C-terminal AMK58_26160 a2baab2786817cd96947d6fe361b67c9 253 Pfam PF00392 Bacterial regulatory proteins, gntR family 36 96 1.5E-18 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_26160 a2baab2786817cd96947d6fe361b67c9 253 SUPERFAMILY SSF46785 30 100 3.15E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_26160 a2baab2786817cd96947d6fe361b67c9 253 SUPERFAMILY SSF48008 103 231 4.18E-27 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_26160 a2baab2786817cd96947d6fe361b67c9 253 Gene3D G3DSA:1.20.120.530 101 238 2.5E-28 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMK58_26160 a2baab2786817cd96947d6fe361b67c9 253 SMART SM00345 38 96 8.9E-19 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMK58_26160 a2baab2786817cd96947d6fe361b67c9 253 Gene3D G3DSA:1.10.10.10 31 97 1.5E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_20595 c154a79c758509a2d8fa0d55bbc60bb7 368 Pfam PF13527 Acetyltransferase (GNAT) domain 58 138 1.2E-6 T 11-10-2018 AMK58_20595 c154a79c758509a2d8fa0d55bbc60bb7 368 SUPERFAMILY SSF55729 23 273 6.3E-13 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_20595 c154a79c758509a2d8fa0d55bbc60bb7 368 Gene3D G3DSA:3.40.630.30 11 140 1.3E-7 T 11-10-2018 AMK58_18145 91b029e9e37162d595cc4b3486857c91 158 Pfam PF13508 Acetyltransferase (GNAT) domain 56 148 4.5E-9 T 11-10-2018 IPR000182 GNAT domain AMK58_18145 91b029e9e37162d595cc4b3486857c91 158 SUPERFAMILY SSF55729 1 152 4.46E-20 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_18145 91b029e9e37162d595cc4b3486857c91 158 Gene3D G3DSA:3.40.630.30 1 154 7.6E-22 T 11-10-2018 AMK58_05135 0e9737567a08914ce0f9e0c9f0168924 153 Pfam PF09523 Protein of unknown function (DUF2390) 6 107 1.9E-34 T 11-10-2018 IPR012659 Conserved hypothetical protein CHP02444 AMK58_05135 0e9737567a08914ce0f9e0c9f0168924 153 TIGRFAM TIGR02444 TIGR02444: TIGR02444 family protein 5 110 2.9E-29 T 11-10-2018 IPR012659 Conserved hypothetical protein CHP02444 AMK58_22125 5a2477f24095938b81f6d4b495430298 118 SUPERFAMILY SSF49472 2 118 1.96E-30 T 11-10-2018 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 AMK58_22125 5a2477f24095938b81f6d4b495430298 118 Pfam PF00576 HIUase/Transthyretin family 5 117 1.0E-22 T 11-10-2018 IPR023416 Transthyretin/hydroxyisourate hydrolase domain Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 AMK58_22125 5a2477f24095938b81f6d4b495430298 118 Gene3D G3DSA:2.60.40.180 1 118 3.6E-26 T 11-10-2018 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 AMK58_07920 3794bf46094ce7c6dd96981d2129c18f 384 Gene3D G3DSA:3.40.50.1820 24 222 2.1E-12 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_07920 3794bf46094ce7c6dd96981d2129c18f 384 SUPERFAMILY SSF53474 43 182 2.94E-13 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_14590 16d98e7f3f44897171434de39315b1cd 130 Pfam PF09912 Uncharacterized protein conserved in bacteria (DUF2141) 13 117 4.6E-30 T 11-10-2018 IPR018673 Protein of unknown function DUF2141 AMK58_02825 5751dfd373d53cd145fa194aec32a143 304 Pfam PF00899 ThiF family 60 261 2.7E-19 T 11-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 AMK58_02825 5751dfd373d53cd145fa194aec32a143 304 SUPERFAMILY SSF69572 59 303 6.93E-26 T 11-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 AMK58_02825 5751dfd373d53cd145fa194aec32a143 304 Gene3D G3DSA:3.40.50.720 45 303 5.6E-28 T 11-10-2018 AMK58_26260 064e5b95a55f70ac1bdd4400d63451bf 697 Pfam PF00771 FHIPEP family 33 689 7.7E-250 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AMK58_26260 064e5b95a55f70ac1bdd4400d63451bf 697 Gene3D G3DSA:1.10.8.540 508 596 7.0E-23 T 11-10-2018 AMK58_26260 064e5b95a55f70ac1bdd4400d63451bf 697 PIRSF PIRSF005419 7 697 2.5E-228 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AMK58_26260 064e5b95a55f70ac1bdd4400d63451bf 697 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 22 697 2.1E-264 T 11-10-2018 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 AMK58_26260 064e5b95a55f70ac1bdd4400d63451bf 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 77 96 7.8E-51 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AMK58_26260 064e5b95a55f70ac1bdd4400d63451bf 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 40 53 7.8E-51 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AMK58_26260 064e5b95a55f70ac1bdd4400d63451bf 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 163 181 7.8E-51 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AMK58_26260 064e5b95a55f70ac1bdd4400d63451bf 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 193 210 7.8E-51 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AMK58_26260 064e5b95a55f70ac1bdd4400d63451bf 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 144 160 7.8E-51 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AMK58_26260 064e5b95a55f70ac1bdd4400d63451bf 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 244 258 7.8E-51 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AMK58_26260 064e5b95a55f70ac1bdd4400d63451bf 697 Gene3D G3DSA:1.10.490.80 600 697 2.8E-14 T 11-10-2018 AMK58_26260 064e5b95a55f70ac1bdd4400d63451bf 697 Gene3D G3DSA:3.40.30.60 364 507 1.7E-43 T 11-10-2018 AMK58_01215 f77ff3b1bbb82c9f277aa943b6359dbe 110 Pfam PF11953 Domain of unknown function (DUF3470) 64 105 7.5E-20 T 11-10-2018 IPR022569 Ferredoxin, C-terminal AMK58_01215 f77ff3b1bbb82c9f277aa943b6359dbe 110 Gene3D G3DSA:3.30.70.20 2 100 3.1E-31 T 11-10-2018 AMK58_01215 f77ff3b1bbb82c9f277aa943b6359dbe 110 SUPERFAMILY SSF54862 2 103 6.44E-24 T 11-10-2018 AMK58_01215 f77ff3b1bbb82c9f277aa943b6359dbe 110 PRINTS PR00354 7Fe ferredoxin signature 9 19 5.2E-19 T 11-10-2018 IPR000813 7Fe ferredoxin GO:0009055 AMK58_01215 f77ff3b1bbb82c9f277aa943b6359dbe 110 PRINTS PR00354 7Fe ferredoxin signature 35 52 5.2E-19 T 11-10-2018 IPR000813 7Fe ferredoxin GO:0009055 AMK58_01215 f77ff3b1bbb82c9f277aa943b6359dbe 110 PRINTS PR00354 7Fe ferredoxin signature 19 29 5.2E-19 T 11-10-2018 IPR000813 7Fe ferredoxin GO:0009055 AMK58_01215 f77ff3b1bbb82c9f277aa943b6359dbe 110 Pfam PF00037 4Fe-4S binding domain 34 55 8.0E-7 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMK58_01215 f77ff3b1bbb82c9f277aa943b6359dbe 110 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMK58_08180 66b1666348933f862f60f96ae00e837a 278 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 39 230 2.4E-34 T 11-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 AMK58_08180 66b1666348933f862f60f96ae00e837a 278 PIRSF PIRSF002936 9 220 1.1E-78 T 11-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 AMK58_08180 66b1666348933f862f60f96ae00e837a 278 PIRSF PIRSF002936 217 278 3.4E-16 T 11-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 AMK58_08180 66b1666348933f862f60f96ae00e837a 278 SUPERFAMILY SSF52402 17 215 1.18E-53 T 11-10-2018 AMK58_08180 66b1666348933f862f60f96ae00e837a 278 Gene3D G3DSA:3.40.50.620 16 217 1.8E-52 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_22050 943a753ebd6a30d3e1c53ea429ddc702 226 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 165 8.4E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_22050 943a753ebd6a30d3e1c53ea429ddc702 226 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 181 8.4E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_22050 943a753ebd6a30d3e1c53ea429ddc702 226 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 193 8.4E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_22050 943a753ebd6a30d3e1c53ea429ddc702 226 Gene3D G3DSA:3.40.50.2300 1 125 1.3E-5 T 11-10-2018 AMK58_22050 943a753ebd6a30d3e1c53ea429ddc702 226 Gene3D G3DSA:1.10.10.10 140 215 1.8E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_22050 943a753ebd6a30d3e1c53ea429ddc702 226 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 205 1.1E-15 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_22050 943a753ebd6a30d3e1c53ea429ddc702 226 SMART SM00421 148 205 6.1E-20 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_22050 943a753ebd6a30d3e1c53ea429ddc702 226 SUPERFAMILY SSF52172 1 118 2.1E-6 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_22050 943a753ebd6a30d3e1c53ea429ddc702 226 SUPERFAMILY SSF46894 140 207 1.33E-17 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMK58_13430 dd4d64869a059bc6152dfb66e1ccd9fd 434 Pfam PF00665 Integrase core domain 134 262 3.5E-23 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMK58_13430 dd4d64869a059bc6152dfb66e1ccd9fd 434 Gene3D G3DSA:3.30.420.10 131 309 1.7E-6 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMK58_13430 dd4d64869a059bc6152dfb66e1ccd9fd 434 Pfam PF13384 Homeodomain-like domain 28 56 2.8E-6 T 11-10-2018 AMK58_13430 dd4d64869a059bc6152dfb66e1ccd9fd 434 SUPERFAMILY SSF53098 134 301 1.21E-14 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMK58_13430 dd4d64869a059bc6152dfb66e1ccd9fd 434 SUPERFAMILY SSF46689 28 114 5.2E-6 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_13985 be0b9aaa38079dd834a5edf73546722f 387 Gene3D G3DSA:3.40.50.720 1 283 2.3E-49 T 11-10-2018 AMK58_13985 be0b9aaa38079dd834a5edf73546722f 387 SUPERFAMILY SSF51735 2 346 1.89E-29 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_13985 be0b9aaa38079dd834a5edf73546722f 387 Pfam PF07993 Male sterility protein 4 233 2.9E-32 T 11-10-2018 IPR013120 Male sterility, NAD-binding Reactome: R-HSA-8848584 AMK58_09525 6b671c248367232249b0d812686cb0fe 445 Pfam PF11902 Protein of unknown function (DUF3422) 18 439 1.4E-170 T 11-10-2018 IPR021830 Protein of unknown function DUF3422 AMK58_15430 dbac5b4cfccfc4e2dbabb24ae887a71a 699 SUPERFAMILY SSF52317 267 520 1.65E-54 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_15430 dbac5b4cfccfc4e2dbabb24ae887a71a 699 Gene3D G3DSA:3.40.50.880 340 519 1.3E-30 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_23660 133c807fcb0e026c983025aae1418fbe 287 Gene3D G3DSA:2.70.98.10 3 287 7.8E-85 T 11-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 AMK58_23660 133c807fcb0e026c983025aae1418fbe 287 Pfam PF01263 Aldose 1-epimerase 3 255 3.1E-29 T 11-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 AMK58_23660 133c807fcb0e026c983025aae1418fbe 287 SUPERFAMILY SSF74650 1 286 3.52E-49 T 11-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 AMK58_05550 d387807ca16909c6fd1b30b762ed4cd4 625 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 13 599 4.8E-217 T 11-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMK58_05550 d387807ca16909c6fd1b30b762ed4cd4 625 SUPERFAMILY SSF56601 243 598 2.73E-98 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMK58_05550 d387807ca16909c6fd1b30b762ed4cd4 625 Pfam PF03717 Penicillin-binding Protein dimerisation domain 59 228 3.6E-41 T 11-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AMK58_05550 d387807ca16909c6fd1b30b762ed4cd4 625 Gene3D G3DSA:3.30.1390.30 79 154 6.1E-38 T 11-10-2018 AMK58_05550 d387807ca16909c6fd1b30b762ed4cd4 625 SUPERFAMILY SSF56519 50 242 1.96E-44 T 11-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 AMK58_05550 d387807ca16909c6fd1b30b762ed4cd4 625 Gene3D G3DSA:3.90.1310.10 59 237 6.1E-38 T 11-10-2018 AMK58_05550 d387807ca16909c6fd1b30b762ed4cd4 625 Pfam PF00905 Penicillin binding protein transpeptidase domain 262 597 7.1E-72 T 11-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AMK58_05550 d387807ca16909c6fd1b30b762ed4cd4 625 Gene3D G3DSA:3.40.710.10 238 610 1.1E-100 T 11-10-2018 AMK58_28125 bec5df986d45d3c369c98fb338535b14 555 Pfam PF06527 TniQ 17 138 3.2E-11 T 11-10-2018 IPR009492 TniQ AMK58_20440 96ba77ed95afd322ef8327988ae8c074 222 Gene3D G3DSA:3.40.190.10 100 186 5.5E-62 T 11-10-2018 AMK58_20440 96ba77ed95afd322ef8327988ae8c074 222 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 7 194 1.6E-52 T 11-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 AMK58_20440 96ba77ed95afd322ef8327988ae8c074 222 Pfam PF01634 ATP phosphoribosyltransferase 58 214 1.5E-44 T 11-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 AMK58_20440 96ba77ed95afd322ef8327988ae8c074 222 Gene3D G3DSA:3.40.190.10 9 206 5.5E-62 T 11-10-2018 AMK58_20440 96ba77ed95afd322ef8327988ae8c074 222 Hamap MF_01018 ATP phosphoribosyltransferase [hisG]. 6 218 47.102 T 11-10-2018 IPR024893 ATP phosphoribosyltransferase HisG, short form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 AMK58_20440 96ba77ed95afd322ef8327988ae8c074 222 SUPERFAMILY SSF53850 6 218 1.35E-60 T 11-10-2018 AMK58_10085 ad39b75784807bd495858a1b59566c2f 632 Pfam PF02705 K+ potassium transporter 21 553 1.1E-215 T 11-10-2018 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 AMK58_10085 ad39b75784807bd495858a1b59566c2f 632 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 12 632 34.793 T 11-10-2018 IPR023051 Potassium uptake protein, low affinity, Kup AMK58_01940 ae0264a8600ffb52eebbb534ce0be249 237 SUPERFAMILY SSF52317 9 225 5.81E-35 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_01940 ae0264a8600ffb52eebbb534ce0be249 237 Gene3D G3DSA:3.40.50.880 7 231 6.2E-61 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_01940 ae0264a8600ffb52eebbb534ce0be249 237 Pfam PF07722 Peptidase C26 50 206 1.6E-43 T 11-10-2018 IPR011697 Peptidase C26 GO:0016787 Reactome: R-HSA-6798695 AMK58_08035 7f653a1bfc69e79d54a3d6763ca28c74 215 SUPERFAMILY SSF52172 1 127 4.98E-26 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_08035 7f653a1bfc69e79d54a3d6763ca28c74 215 SMART SM00448 1 115 8.6E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_08035 7f653a1bfc69e79d54a3d6763ca28c74 215 SUPERFAMILY SSF46894 146 211 8.16E-20 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMK58_08035 7f653a1bfc69e79d54a3d6763ca28c74 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 186 1.0E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_08035 7f653a1bfc69e79d54a3d6763ca28c74 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 170 1.0E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_08035 7f653a1bfc69e79d54a3d6763ca28c74 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 186 198 1.0E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_08035 7f653a1bfc69e79d54a3d6763ca28c74 215 Pfam PF00196 Bacterial regulatory proteins, luxR family 156 209 1.1E-19 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_08035 7f653a1bfc69e79d54a3d6763ca28c74 215 Pfam PF00072 Response regulator receiver domain 3 115 6.9E-19 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_08035 7f653a1bfc69e79d54a3d6763ca28c74 215 Gene3D G3DSA:3.40.50.12740 1 214 2.9E-51 T 11-10-2018 AMK58_08035 7f653a1bfc69e79d54a3d6763ca28c74 215 SMART SM00421 153 210 1.5E-25 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMK58_02355 dfa91b692c6212901c404584e90952bf 394 Gene3D G3DSA:3.40.50.2300 10 142 1.8E-40 T 11-10-2018 AMK58_02355 dfa91b692c6212901c404584e90952bf 394 SUPERFAMILY SSF81606 246 390 6.02E-5 T 11-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AMK58_02355 dfa91b692c6212901c404584e90952bf 394 SMART SM00331 174 392 3.9E-12 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AMK58_02355 dfa91b692c6212901c404584e90952bf 394 Pfam PF00072 Response regulator receiver domain 15 127 1.0E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_02355 dfa91b692c6212901c404584e90952bf 394 SUPERFAMILY SSF52172 9 146 5.69E-42 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_02355 dfa91b692c6212901c404584e90952bf 394 Gene3D G3DSA:3.60.40.10 143 393 2.1E-45 T 11-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AMK58_02355 dfa91b692c6212901c404584e90952bf 394 SMART SM00448 13 127 3.5E-38 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_02355 dfa91b692c6212901c404584e90952bf 394 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 205 392 2.8E-35 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AMK58_23300 f7d22b882997e11f2bff71b079c54b4a 155 Gene3D G3DSA:1.10.10.1550 64 119 1.7E-30 T 11-10-2018 AMK58_23300 f7d22b882997e11f2bff71b079c54b4a 155 Pfam PF05443 ROS/MUCR transcriptional regulator protein 15 136 6.1E-48 T 11-10-2018 IPR008807 ROSMUCR transcriptional regulator GO:0003677|GO:0006355|GO:0008270 AMK58_02530 0585b4323f4d9bb4e7481f1089584873 192 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 3 178 9.5E-63 T 11-10-2018 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG AMK58_02530 0585b4323f4d9bb4e7481f1089584873 192 Pfam PF03641 Possible lysine decarboxylase 45 173 1.7E-41 T 11-10-2018 IPR031100 LOG family AMK58_02530 0585b4323f4d9bb4e7481f1089584873 192 SUPERFAMILY SSF102405 1 177 2.9E-62 T 11-10-2018 AMK58_02530 0585b4323f4d9bb4e7481f1089584873 192 Gene3D G3DSA:3.40.50.450 1 192 4.1E-77 T 11-10-2018 AMK58_26555 b2f32635d8fba131f692803e7b54e3e9 227 Gene3D G3DSA:3.40.50.150 3 152 2.3E-34 T 11-10-2018 AMK58_26555 b2f32635d8fba131f692803e7b54e3e9 227 Pfam PF08241 Methyltransferase domain 22 117 2.8E-24 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 AMK58_26555 b2f32635d8fba131f692803e7b54e3e9 227 SUPERFAMILY SSF53335 9 151 7.81E-35 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_11075 ee1f691ae9ee71c16a561cb28a45d527 570 Gene3D G3DSA:3.30.1120.10 471 552 2.6E-25 T 11-10-2018 AMK58_11075 ee1f691ae9ee71c16a561cb28a45d527 570 Gene3D G3DSA:3.40.720.10 29 469 1.4E-139 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 AMK58_11075 ee1f691ae9ee71c16a561cb28a45d527 570 Pfam PF00884 Sulfatase 32 440 1.8E-74 T 11-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 AMK58_11075 ee1f691ae9ee71c16a561cb28a45d527 570 ProSitePatterns PS00149 Sulfatases signature 2. 132 142 - T 11-10-2018 IPR024607 Sulfatase, conserved site AMK58_11075 ee1f691ae9ee71c16a561cb28a45d527 570 SUPERFAMILY SSF53649 30 546 6.11E-152 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 AMK58_07290 38e7b13c1d521001613de43299879fae 95 Gene3D G3DSA:3.30.70.20 31 92 2.1E-10 T 11-10-2018 AMK58_07290 38e7b13c1d521001613de43299879fae 95 SUPERFAMILY SSF54862 20 91 1.35E-12 T 11-10-2018 AMK58_07290 38e7b13c1d521001613de43299879fae 95 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 73 84 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMK58_07290 38e7b13c1d521001613de43299879fae 95 Pfam PF12838 4Fe-4S dicluster domain 41 87 2.5E-6 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMK58_08975 3f63da40e8fbb15fd0b993b3f474d13e 160 Pfam PF14347 Domain of unknown function (DUF4399) 69 158 3.8E-38 T 11-10-2018 IPR025512 Domain of unknown function DUF4399 AMK58_26620 e56e334e0cee41acd1e10608da6f98b0 153 TIGRFAM TIGR01950 SoxR: redox-sensitive transcriptional activator SoxR 13 151 4.6E-68 T 11-10-2018 IPR010211 Redox-sensitive transcriptional activator SoxR GO:0003677|GO:0006355|GO:0006979|GO:0051537 AMK58_26620 e56e334e0cee41acd1e10608da6f98b0 153 ProSitePatterns PS00552 MerR-type HTH domain signature. 16 38 - T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMK58_26620 e56e334e0cee41acd1e10608da6f98b0 153 Gene3D G3DSA:1.10.1660.10 6 136 7.3E-34 T 11-10-2018 AMK58_26620 e56e334e0cee41acd1e10608da6f98b0 153 SUPERFAMILY SSF46955 13 135 4.03E-29 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily AMK58_26620 e56e334e0cee41acd1e10608da6f98b0 153 Pfam PF00376 MerR family regulatory protein 14 50 1.5E-13 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMK58_26620 e56e334e0cee41acd1e10608da6f98b0 153 Pfam PF09278 MerR, DNA binding 55 120 4.6E-18 T 11-10-2018 IPR015358 Transcription regulator MerR, DNA binding AMK58_26620 e56e334e0cee41acd1e10608da6f98b0 153 SMART SM00422 13 81 6.3E-25 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMK58_26620 e56e334e0cee41acd1e10608da6f98b0 153 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 14 25 9.2E-13 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMK58_26620 e56e334e0cee41acd1e10608da6f98b0 153 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 48 68 9.2E-13 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMK58_26620 e56e334e0cee41acd1e10608da6f98b0 153 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 25 38 9.2E-13 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMK58_12945 821c5552d06d5069c8846154c8513900 232 Gene3D G3DSA:3.40.50.1820 15 230 5.0E-44 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_12945 821c5552d06d5069c8846154c8513900 232 Pfam PF01738 Dienelactone hydrolase family 28 231 2.0E-36 T 11-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 AMK58_12945 821c5552d06d5069c8846154c8513900 232 SUPERFAMILY SSF53474 16 229 1.82E-36 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_28015 6ad45b05b773b3e5620843c942f75f8a 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 4.7E-15 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_28015 6ad45b05b773b3e5620843c942f75f8a 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 4.7E-15 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_28015 6ad45b05b773b3e5620843c942f75f8a 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 4.7E-15 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_28015 6ad45b05b773b3e5620843c942f75f8a 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 9.6E-46 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_28015 6ad45b05b773b3e5620843c942f75f8a 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 9.6E-46 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_28015 6ad45b05b773b3e5620843c942f75f8a 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 9.6E-46 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_28015 6ad45b05b773b3e5620843c942f75f8a 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 9.6E-46 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_28015 6ad45b05b773b3e5620843c942f75f8a 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 207 227 9.6E-46 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_28015 6ad45b05b773b3e5620843c942f75f8a 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 9.6E-46 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_28015 6ad45b05b773b3e5620843c942f75f8a 250 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 242 4.0E-66 T 11-10-2018 AMK58_28015 6ad45b05b773b3e5620843c942f75f8a 250 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 5 184 2.5E-4 T 11-10-2018 AMK58_28015 6ad45b05b773b3e5620843c942f75f8a 250 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMK58_28015 6ad45b05b773b3e5620843c942f75f8a 250 SUPERFAMILY SSF51735 6 245 2.51E-82 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_28015 6ad45b05b773b3e5620843c942f75f8a 250 Gene3D G3DSA:3.40.50.720 3 248 8.9E-87 T 11-10-2018 AMK58_07170 cee0a3320eb7afeeec9e7994dfd57997 298 TIGRFAM TIGR03381 agmatine_aguB: N-carbamoylputrescine amidase 9 286 3.3E-144 T 11-10-2018 IPR017755 N-carbamoylputrescine amidase GO:0006596|GO:0050126 KEGG: 00330+3.5.1.53|MetaCyc: PWY-43 AMK58_07170 cee0a3320eb7afeeec9e7994dfd57997 298 Gene3D G3DSA:3.60.110.10 2 297 6.6E-114 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMK58_07170 cee0a3320eb7afeeec9e7994dfd57997 298 Pfam PF00795 Carbon-nitrogen hydrolase 10 270 1.4E-54 T 11-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 AMK58_07170 cee0a3320eb7afeeec9e7994dfd57997 298 SUPERFAMILY SSF56317 7 287 2.88E-85 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMK58_15565 fa6020244d2821dcf1fe6e237f87b4c2 262 SUPERFAMILY SSF51735 12 258 2.1E-62 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_15565 fa6020244d2821dcf1fe6e237f87b4c2 262 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 21 257 1.5E-43 T 11-10-2018 AMK58_15565 fa6020244d2821dcf1fe6e237f87b4c2 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 2.7E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15565 fa6020244d2821dcf1fe6e237f87b4c2 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 2.7E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15565 fa6020244d2821dcf1fe6e237f87b4c2 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 2.7E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15565 fa6020244d2821dcf1fe6e237f87b4c2 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 1.2E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15565 fa6020244d2821dcf1fe6e237f87b4c2 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 1.2E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15565 fa6020244d2821dcf1fe6e237f87b4c2 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 1.2E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15565 fa6020244d2821dcf1fe6e237f87b4c2 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 1.2E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15565 fa6020244d2821dcf1fe6e237f87b4c2 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 14 31 1.2E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15565 fa6020244d2821dcf1fe6e237f87b4c2 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 1.2E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_15565 fa6020244d2821dcf1fe6e237f87b4c2 262 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMK58_15565 fa6020244d2821dcf1fe6e237f87b4c2 262 Gene3D G3DSA:3.40.50.720 4 261 2.2E-66 T 11-10-2018 AMK58_10150 6338520407521cf9b1af9b771291b9aa 256 PRINTS PR01008 Flagellar L-ring protein signature 217 231 2.5E-27 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 AMK58_10150 6338520407521cf9b1af9b771291b9aa 256 PRINTS PR01008 Flagellar L-ring protein signature 233 247 2.5E-27 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 AMK58_10150 6338520407521cf9b1af9b771291b9aa 256 PRINTS PR01008 Flagellar L-ring protein signature 170 185 2.5E-27 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 AMK58_10150 6338520407521cf9b1af9b771291b9aa 256 PRINTS PR01008 Flagellar L-ring protein signature 196 212 2.5E-27 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 AMK58_10150 6338520407521cf9b1af9b771291b9aa 256 PRINTS PR01008 Flagellar L-ring protein signature 90 102 2.5E-27 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 AMK58_10150 6338520407521cf9b1af9b771291b9aa 256 Hamap MF_00415 Flagellar L-ring protein [flgH]. 12 254 24.629 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 AMK58_10150 6338520407521cf9b1af9b771291b9aa 256 Pfam PF02107 Flagellar L-ring protein 69 255 3.5E-57 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 AMK58_00530 424e46e4e4c6b44c22ecc0c5b3ac13f7 542 SUPERFAMILY SSF52540 10 219 2.44E-40 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_00530 424e46e4e4c6b44c22ecc0c5b3ac13f7 542 SMART SM00382 34 216 8.3E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_00530 424e46e4e4c6b44c22ecc0c5b3ac13f7 542 SMART SM00382 367 534 5.2E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_00530 424e46e4e4c6b44c22ecc0c5b3ac13f7 542 Pfam PF00005 ABC transporter 359 488 2.7E-16 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_00530 424e46e4e4c6b44c22ecc0c5b3ac13f7 542 Gene3D G3DSA:3.40.50.300 327 530 2.4E-44 T 11-10-2018 AMK58_00530 424e46e4e4c6b44c22ecc0c5b3ac13f7 542 SUPERFAMILY SSF52540 328 520 3.32E-37 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_00530 424e46e4e4c6b44c22ecc0c5b3ac13f7 542 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_00530 424e46e4e4c6b44c22ecc0c5b3ac13f7 542 Pfam PF00005 ABC transporter 36 172 9.9E-23 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_00530 424e46e4e4c6b44c22ecc0c5b3ac13f7 542 Gene3D G3DSA:3.40.50.300 8 272 5.4E-48 T 11-10-2018 AMK58_04810 4bc5def4782627185a98890e9aeca606 415 Gene3D G3DSA:3.30.465.40 2 195 2.1E-27 T 11-10-2018 AMK58_04810 4bc5def4782627185a98890e9aeca606 415 SUPERFAMILY SSF56176 5 185 2.76E-29 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMK58_04810 4bc5def4782627185a98890e9aeca606 415 SUPERFAMILY SSF55103 200 413 1.14E-21 T 11-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 AMK58_04810 4bc5def4782627185a98890e9aeca606 415 Pfam PF01565 FAD binding domain 6 145 1.4E-14 T 11-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMK58_04810 4bc5def4782627185a98890e9aeca606 415 Gene3D G3DSA:1.10.45.10 380 411 4.6E-5 T 11-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 AMK58_13550 0ff51e0414daf10fc04703dc7f07c5ff 360 SUPERFAMILY SSF52540 77 288 2.52E-41 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_13550 0ff51e0414daf10fc04703dc7f07c5ff 360 ProSitePatterns PS00674 AAA-protein family signature. 217 236 - T 11-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 AMK58_13550 0ff51e0414daf10fc04703dc7f07c5ff 360 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 119 244 1.2E-28 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMK58_13550 0ff51e0414daf10fc04703dc7f07c5ff 360 SMART SM00382 115 247 1.2E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_13550 0ff51e0414daf10fc04703dc7f07c5ff 360 Gene3D G3DSA:3.40.50.300 69 266 2.9E-44 T 11-10-2018 AMK58_16465 1df94f4699e455ae37d2fa3c456f9180 417 Pfam PF13535 ATP-grasp domain 147 295 2.3E-12 T 11-10-2018 AMK58_16465 1df94f4699e455ae37d2fa3c456f9180 417 Gene3D G3DSA:3.30.470.20 105 413 3.5E-54 T 11-10-2018 AMK58_16465 1df94f4699e455ae37d2fa3c456f9180 417 SUPERFAMILY SSF56059 109 316 2.12E-28 T 11-10-2018 AMK58_16390 7d8ece59f253ed9e2d746bb8a61874f7 179 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 23 151 6.5E-26 T 11-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ AMK58_03705 afa243785850cf8423215c4335994e5b 243 Pfam PF01513 ATP-NAD kinase 17 204 2.3E-15 T 11-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 AMK58_03705 afa243785850cf8423215c4335994e5b 243 Gene3D G3DSA:2.60.200.30 83 217 1.2E-33 T 11-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 AMK58_03705 afa243785850cf8423215c4335994e5b 243 SUPERFAMILY SSF111331 11 228 8.37E-52 T 11-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily AMK58_03705 afa243785850cf8423215c4335994e5b 243 Gene3D G3DSA:3.40.50.10330 15 82 1.2E-33 T 11-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 AMK58_00225 e990955c54376926771392419efb5f67 385 Gene3D G3DSA:3.40.50.2000 200 356 1.2E-19 T 11-10-2018 AMK58_00225 e990955c54376926771392419efb5f67 385 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 276 351 7.2E-10 T 11-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 AMK58_00225 e990955c54376926771392419efb5f67 385 SUPERFAMILY SSF53756 1 353 1.05E-18 T 11-10-2018 AMK58_12975 0331db434890c8cc75320f902132652a 243 Gene3D G3DSA:3.60.21.10 2 241 2.3E-20 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like AMK58_12975 0331db434890c8cc75320f902132652a 243 PIRSF PIRSF008292 9 243 4.5E-86 T 11-10-2018 IPR016538 Uncharacterised conserved protein UCP008292 AMK58_12975 0331db434890c8cc75320f902132652a 243 SUPERFAMILY SSF56300 11 229 1.19E-34 T 11-10-2018 AMK58_12975 0331db434890c8cc75320f902132652a 243 Pfam PF00149 Calcineurin-like phosphoesterase 11 210 1.8E-16 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AMK58_29020 51a6bf9f03b1dfabf1c09a193d5b2aea 360 Pfam PF04577 Protein of unknown function (DUF563) 130 331 7.7E-40 T 11-10-2018 IPR007657 Glycosyltransferase 61 GO:0016757 AMK58_29020 51a6bf9f03b1dfabf1c09a193d5b2aea 360 PIRSF PIRSF030158 1 360 2.5E-106 T 11-10-2018 IPR024698 Capsular polysaccharide biosynthesis protein, Cps23fI-type, predicted AMK58_11220 6d4f4b36cc7b45877f1f8039ab157e81 96 TIGRFAM TIGR01573 cas2: CRISPR-associated endonuclease Cas2 1 89 3.8E-20 T 11-10-2018 IPR021127 CRISPR-associated endonuclease Cas2 GO:0004521|GO:0043571 AMK58_11220 6d4f4b36cc7b45877f1f8039ab157e81 96 Hamap MF_01471 CRISPR-associated endoribonuclease Cas2 [cas2]. 1 88 15.66 T 11-10-2018 IPR021127 CRISPR-associated endonuclease Cas2 GO:0004521|GO:0043571 AMK58_11220 6d4f4b36cc7b45877f1f8039ab157e81 96 Gene3D G3DSA:3.30.70.240 1 96 8.5E-35 T 11-10-2018 AMK58_11220 6d4f4b36cc7b45877f1f8039ab157e81 96 SUPERFAMILY SSF143430 1 89 9.81E-26 T 11-10-2018 AMK58_11220 6d4f4b36cc7b45877f1f8039ab157e81 96 Pfam PF09827 CRISPR associated protein Cas2 1 78 1.9E-23 T 11-10-2018 IPR019199 Virulence-associated protein D / CRISPR associated protein Cas2 AMK58_11220 6d4f4b36cc7b45877f1f8039ab157e81 96 PIRSF PIRSF032582 1 96 9.5E-39 T 11-10-2018 IPR021127 CRISPR-associated endonuclease Cas2 GO:0004521|GO:0043571 AMK58_21620 9a53bdbf56780c866cf02d7ee6769685 257 Gene3D G3DSA:3.40.50.150 94 236 2.6E-25 T 11-10-2018 AMK58_21620 9a53bdbf56780c866cf02d7ee6769685 257 Pfam PF08241 Methyltransferase domain 118 165 3.6E-16 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 AMK58_21620 9a53bdbf56780c866cf02d7ee6769685 257 SUPERFAMILY SSF53335 118 219 1.24E-22 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_27320 633f65f4035882e87d942fe500dc5e74 328 Hamap MF_01601 ADP-L-glycero-D-manno-heptose-6-epimerase [hldD]. 1 323 47.145 T 11-10-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 AMK58_27320 633f65f4035882e87d942fe500dc5e74 328 TIGRFAM TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase 2 322 3.4E-116 T 11-10-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 AMK58_27320 633f65f4035882e87d942fe500dc5e74 328 Pfam PF01370 NAD dependent epimerase/dehydratase family 2 249 1.4E-38 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMK58_27320 633f65f4035882e87d942fe500dc5e74 328 SUPERFAMILY SSF51735 2 325 7.5E-59 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_27320 633f65f4035882e87d942fe500dc5e74 328 Gene3D G3DSA:3.40.50.720 3 317 3.0E-113 T 11-10-2018 AMK58_27320 633f65f4035882e87d942fe500dc5e74 328 Gene3D G3DSA:3.90.25.10 174 304 3.0E-113 T 11-10-2018 AMK58_06560 0c899ddacadaccff108148c4c7bda8f5 280 Pfam PF00581 Rhodanese-like domain 13 125 8.1E-13 T 11-10-2018 IPR001763 Rhodanese-like domain AMK58_06560 0c899ddacadaccff108148c4c7bda8f5 280 Pfam PF00581 Rhodanese-like domain 163 268 4.9E-7 T 11-10-2018 IPR001763 Rhodanese-like domain AMK58_06560 0c899ddacadaccff108148c4c7bda8f5 280 SMART SM00450 152 272 1.4E-7 T 11-10-2018 IPR001763 Rhodanese-like domain AMK58_06560 0c899ddacadaccff108148c4c7bda8f5 280 SMART SM00450 10 129 1.4E-14 T 11-10-2018 IPR001763 Rhodanese-like domain AMK58_06560 0c899ddacadaccff108148c4c7bda8f5 280 Gene3D G3DSA:3.40.250.10 3 147 6.0E-33 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily AMK58_06560 0c899ddacadaccff108148c4c7bda8f5 280 Gene3D G3DSA:3.40.250.10 156 279 3.3E-25 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily AMK58_06560 0c899ddacadaccff108148c4c7bda8f5 280 SUPERFAMILY SSF52821 155 277 4.71E-21 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily AMK58_06560 0c899ddacadaccff108148c4c7bda8f5 280 SUPERFAMILY SSF52821 7 146 1.96E-28 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily AMK58_13195 d96298a0bc22825100b3112947424c3c 233 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 82 231 1.8E-8 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_13195 d96298a0bc22825100b3112947424c3c 233 SUPERFAMILY SSF161098 41 216 1.57E-5 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_14660 a2731191b41a217bb4d89a907e1bfc72 390 Hamap MF_02079 Peptidoglycan glycosyltransferase MrdB [mrdB]. 24 381 26.931 T 11-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMK58_14660 a2731191b41a217bb4d89a907e1bfc72 390 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 30 378 5.8E-125 T 11-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMK58_14660 a2731191b41a217bb4d89a907e1bfc72 390 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 336 360 - T 11-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMK58_14660 a2731191b41a217bb4d89a907e1bfc72 390 Pfam PF01098 Cell cycle protein 36 378 5.5E-98 T 11-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMK58_19270 936287885479cd782420f6b8fe199690 334 Pfam PF00753 Metallo-beta-lactamase superfamily 97 291 4.0E-20 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMK58_19270 936287885479cd782420f6b8fe199690 334 SMART SM00849 98 304 5.6E-18 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMK58_19270 936287885479cd782420f6b8fe199690 334 SUPERFAMILY SSF56281 39 325 3.8E-56 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMK58_19270 936287885479cd782420f6b8fe199690 334 Gene3D G3DSA:3.60.15.10 37 331 9.1E-107 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMK58_03460 3dcfcd4348718021557285306958e406 127 PIRSF PIRSF009151 1 121 2.1E-56 T 11-10-2018 IPR008497 Protein of unknown function DUF779 AMK58_03460 3dcfcd4348718021557285306958e406 127 Pfam PF05610 Protein of unknown function (DUF779) 14 107 3.5E-46 T 11-10-2018 IPR008497 Protein of unknown function DUF779 AMK58_18950 41eb4994103f82813241561d048e22ee 720 Pfam PF13374 Tetratricopeptide repeat 270 298 0.018 T 11-10-2018 AMK58_18950 41eb4994103f82813241561d048e22ee 720 Pfam PF13432 Tetratricopeptide repeat 207 269 3.0E-7 T 11-10-2018 AMK58_18950 41eb4994103f82813241561d048e22ee 720 Gene3D G3DSA:3.40.50.2000 511 694 7.7E-114 T 11-10-2018 AMK58_18950 41eb4994103f82813241561d048e22ee 720 Gene3D G3DSA:1.25.40.10 140 205 2.0E-8 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_18950 41eb4994103f82813241561d048e22ee 720 Gene3D G3DSA:1.25.40.10 1 64 7.0E-9 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_18950 41eb4994103f82813241561d048e22ee 720 Gene3D G3DSA:1.25.40.10 65 139 1.8E-9 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_18950 41eb4994103f82813241561d048e22ee 720 Gene3D G3DSA:1.25.40.10 206 322 6.6E-23 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_18950 41eb4994103f82813241561d048e22ee 720 SMART SM00028 134 167 350.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18950 41eb4994103f82813241561d048e22ee 720 SMART SM00028 23 56 28.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18950 41eb4994103f82813241561d048e22ee 720 SMART SM00028 91 126 380.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18950 41eb4994103f82813241561d048e22ee 720 SMART SM00028 270 303 0.051 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18950 41eb4994103f82813241561d048e22ee 720 SMART SM00028 236 269 0.41 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18950 41eb4994103f82813241561d048e22ee 720 SMART SM00028 57 90 1.8 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18950 41eb4994103f82813241561d048e22ee 720 SMART SM00028 202 235 0.046 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18950 41eb4994103f82813241561d048e22ee 720 SMART SM00028 168 201 24.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_18950 41eb4994103f82813241561d048e22ee 720 Pfam PF13844 Glycosyl transferase family 41 355 497 4.7E-19 T 11-10-2018 IPR029489 O-GlcNAc transferase, C-terminal KEGG: 00514+2.4.1.255|MetaCyc: PWY-7437|Reactome: R-HSA-3214847|Reactome: R-HSA-5689603 AMK58_18950 41eb4994103f82813241561d048e22ee 720 Pfam PF13844 Glycosyl transferase family 41 519 712 6.2E-19 T 11-10-2018 IPR029489 O-GlcNAc transferase, C-terminal KEGG: 00514+2.4.1.255|MetaCyc: PWY-7437|Reactome: R-HSA-3214847|Reactome: R-HSA-5689603 AMK58_18950 41eb4994103f82813241561d048e22ee 720 SUPERFAMILY SSF48452 2 276 1.66E-30 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_18950 41eb4994103f82813241561d048e22ee 720 Gene3D G3DSA:3.40.50.11380 343 699 7.7E-114 T 11-10-2018 AMK58_22810 52841156e47c9bb817af17ff3bb18240 673 Gene3D G3DSA:1.10.8.500 325 375 1.9E-16 T 11-10-2018 AMK58_22810 52841156e47c9bb817af17ff3bb18240 673 SMART SM00304 324 377 3.1E-12 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_22810 52841156e47c9bb817af17ff3bb18240 673 Gene3D G3DSA:1.10.287.950 392 667 8.6E-54 T 11-10-2018 AMK58_22810 52841156e47c9bb817af17ff3bb18240 673 SUPERFAMILY SSF58104 352 666 2.22E-58 T 11-10-2018 AMK58_22810 52841156e47c9bb817af17ff3bb18240 673 Pfam PF00672 HAMP domain 324 373 7.4E-12 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_22810 52841156e47c9bb817af17ff3bb18240 673 SMART SM00283 413 667 9.2E-40 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_22810 52841156e47c9bb817af17ff3bb18240 673 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 486 636 7.6E-28 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_15190 3ebf68b09809dde94d8068448c1d4b67 269 Gene3D G3DSA:1.10.10.60 174 265 1.9E-15 T 11-10-2018 AMK58_15190 3ebf68b09809dde94d8068448c1d4b67 269 Pfam PF12833 Helix-turn-helix domain 200 263 1.3E-13 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMK58_15190 3ebf68b09809dde94d8068448c1d4b67 269 Pfam PF12852 Cupin 5 162 8.3E-22 T 11-10-2018 IPR032783 AraC-type transcription regulator, ligand-binding domain AMK58_15190 3ebf68b09809dde94d8068448c1d4b67 269 SMART SM00342 194 269 1.2E-12 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMK58_15190 3ebf68b09809dde94d8068448c1d4b67 269 SUPERFAMILY SSF46689 177 228 1.58E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_08885 b557426f33102324886871347e88aafd 144 Pfam PF01814 Hemerythrin HHE cation binding domain 18 98 1.0E-6 T 11-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 AMK58_08885 b557426f33102324886871347e88aafd 144 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 9 129 3.3E-23 T 11-10-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 AMK58_08885 b557426f33102324886871347e88aafd 144 SUPERFAMILY SSF47188 5 131 3.66E-22 T 11-10-2018 IPR035938 Hemerythrin-like superfamily AMK58_08885 b557426f33102324886871347e88aafd 144 Gene3D G3DSA:1.20.120.50 3 136 6.5E-24 T 11-10-2018 IPR035938 Hemerythrin-like superfamily AMK58_00420 495fd35e967da83bdb261eec46a1f827 282 Pfam PF03618 Kinase/pyrophosphorylase 6 261 9.4E-96 T 11-10-2018 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 AMK58_00420 495fd35e967da83bdb261eec46a1f827 282 Hamap MF_00921 Putative pyruvate, phosphate dikinase regulatory protein. 4 266 56.728 T 11-10-2018 IPR026565 Putative pyruvate, phosphate dikinase regulatory protein AMK58_18190 e79d9317c752d85c8c58c84f136bba26 255 Pfam PF08241 Methyltransferase domain 58 152 2.0E-9 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 AMK58_18190 e79d9317c752d85c8c58c84f136bba26 255 Gene3D G3DSA:3.40.50.150 17 178 9.4E-23 T 11-10-2018 AMK58_18190 e79d9317c752d85c8c58c84f136bba26 255 SUPERFAMILY SSF53335 22 223 1.69E-24 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_27380 855d1b564fab30c60f3d2aa9f60ebe91 526 SUPERFAMILY SSF53720 18 519 3.93E-99 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMK58_27380 855d1b564fab30c60f3d2aa9f60ebe91 526 Gene3D G3DSA:3.40.309.10 268 456 1.7E-208 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMK58_27380 855d1b564fab30c60f3d2aa9f60ebe91 526 Pfam PF00171 Aldehyde dehydrogenase family 18 425 1.2E-39 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMK58_27380 855d1b564fab30c60f3d2aa9f60ebe91 526 Gene3D G3DSA:3.40.605.10 43 521 1.7E-208 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMK58_15865 455a4743b43f235dceaa433d68e0639a 364 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 6 360 7.2E-83 T 11-10-2018 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 AMK58_15865 455a4743b43f235dceaa433d68e0639a 364 Pfam PF03739 Predicted permease YjgP/YjgQ family 9 359 9.4E-62 T 11-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 AMK58_07890 a78b8ac76273dcfb1324aa6956c5d512 136 Gene3D G3DSA:1.10.10.1550 57 112 8.2E-29 T 11-10-2018 AMK58_07890 a78b8ac76273dcfb1324aa6956c5d512 136 Pfam PF05443 ROS/MUCR transcriptional regulator protein 9 129 3.6E-47 T 11-10-2018 IPR008807 ROSMUCR transcriptional regulator GO:0003677|GO:0006355|GO:0008270 AMK58_19975 fc1fd26c212032a71e5769316c8428cb 273 SUPERFAMILY SSF56300 1 241 6.69E-48 T 11-10-2018 AMK58_19975 fc1fd26c212032a71e5769316c8428cb 273 Gene3D G3DSA:3.60.21.10 1 245 1.1E-54 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like AMK58_19975 fc1fd26c212032a71e5769316c8428cb 273 PIRSF PIRSF000883 1 246 4.5E-49 T 11-10-2018 IPR011152 Phosphoesterase MJ0912 AMK58_19975 fc1fd26c212032a71e5769316c8428cb 273 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 1 213 6.4E-25 T 11-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 AMK58_11300 8ecd8267b40000ef711bda20766c5280 92 SUPERFAMILY SSF81301 8 90 3.27E-19 T 11-10-2018 AMK58_11300 8ecd8267b40000ef711bda20766c5280 92 Pfam PF01909 Nucleotidyltransferase domain 11 89 5.3E-12 T 11-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 AMK58_11300 8ecd8267b40000ef711bda20766c5280 92 Gene3D G3DSA:3.30.460.10 5 91 8.6E-24 T 11-10-2018 AMK58_02835 8b16e60daf8989d3aede4c290fda3af9 143 Gene3D G3DSA:3.30.420.470 26 135 1.2E-8 T 11-10-2018 AMK58_02835 8b16e60daf8989d3aede4c290fda3af9 143 Pfam PF13358 DDE superfamily endonuclease 6 110 1.1E-16 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain AMK58_18350 94102f9fcb6df79fc5656d061586601d 256 Gene3D G3DSA:3.40.50.720 1 255 2.9E-65 T 11-10-2018 AMK58_18350 94102f9fcb6df79fc5656d061586601d 256 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 14 182 0.0051 T 11-10-2018 AMK58_18350 94102f9fcb6df79fc5656d061586601d 256 SUPERFAMILY SSF51735 9 255 6.06E-65 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_18350 94102f9fcb6df79fc5656d061586601d 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 20 253 5.8E-49 T 11-10-2018 AMK58_18350 94102f9fcb6df79fc5656d061586601d 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 6.8E-26 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_18350 94102f9fcb6df79fc5656d061586601d 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 6.8E-26 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_18350 94102f9fcb6df79fc5656d061586601d 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 15 32 6.8E-26 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_18350 94102f9fcb6df79fc5656d061586601d 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 87 98 6.8E-26 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_18350 94102f9fcb6df79fc5656d061586601d 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 6.8E-26 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_04840 e7b2ef40de2f3542c15fb3ce9b4f036b 343 Gene3D G3DSA:1.10.530.10 15 220 2.7E-56 T 11-10-2018 AMK58_04840 e7b2ef40de2f3542c15fb3ce9b4f036b 343 SUPERFAMILY SSF53955 28 170 9.0E-10 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily AMK58_01105 f054b601d7e0b592d746866f6163d51d 69 PIRSF PIRSF002599 1 69 2.9E-23 T 11-10-2018 IPR012156 Cold shock, CspA GO:0003676 AMK58_01105 f054b601d7e0b592d746866f6163d51d 69 SMART SM00357 3 67 1.3E-23 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 AMK58_01105 f054b601d7e0b592d746866f6163d51d 69 PRINTS PR00050 Cold shock protein signature 40 58 1.2E-16 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_01105 f054b601d7e0b592d746866f6163d51d 69 PRINTS PR00050 Cold shock protein signature 25 34 1.2E-16 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_01105 f054b601d7e0b592d746866f6163d51d 69 PRINTS PR00050 Cold shock protein signature 4 19 1.2E-16 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_01105 f054b601d7e0b592d746866f6163d51d 69 SUPERFAMILY SSF50249 1 67 2.14E-22 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_01105 f054b601d7e0b592d746866f6163d51d 69 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 3.2E-26 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_01105 f054b601d7e0b592d746866f6163d51d 69 Gene3D G3DSA:2.40.50.140 1 66 1.4E-26 T 11-10-2018 AMK58_01105 f054b601d7e0b592d746866f6163d51d 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 11-10-2018 IPR019844 Cold-shock conserved site AMK58_18325 63dc82008723cf0e1e709189ee3f90ea 350 Gene3D G3DSA:3.90.1210.10 294 349 3.2E-18 T 11-10-2018 AMK58_18325 63dc82008723cf0e1e709189ee3f90ea 350 SMART SM00858 288 346 1.9E-12 T 11-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 AMK58_18325 63dc82008723cf0e1e709189ee3f90ea 350 TIGRFAM TIGR03586 PseI: pseudaminic acid synthase 18 340 3.7E-146 T 11-10-2018 IPR020030 Pseudaminic acid biosynthesis, PseI KEGG: 00520+2.5.1.97|MetaCyc: PWY-6143 AMK58_18325 63dc82008723cf0e1e709189ee3f90ea 350 SUPERFAMILY SSF51269 287 346 1.35E-15 T 11-10-2018 IPR036732 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain superfamily Reactome: R-HSA-4085001 AMK58_18325 63dc82008723cf0e1e709189ee3f90ea 350 Gene3D G3DSA:3.20.20.70 1 293 4.5E-102 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_18325 63dc82008723cf0e1e709189ee3f90ea 350 SUPERFAMILY SSF51569 5 297 8.67E-87 T 11-10-2018 AMK58_18325 63dc82008723cf0e1e709189ee3f90ea 350 Pfam PF03102 NeuB family 38 273 1.5E-87 T 11-10-2018 IPR013132 N-acetylneuraminic acid synthase, N-terminal GO:0016051 Reactome: R-HSA-4085001 AMK58_18325 63dc82008723cf0e1e709189ee3f90ea 350 Pfam PF08666 SAF domain 289 345 1.2E-9 T 11-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 AMK58_03575 6e8fa0b3ad4415a94587e2c91ed4d2bc 187 Gene3D G3DSA:3.30.40.60 70 160 5.8E-23 T 11-10-2018 AMK58_03575 6e8fa0b3ad4415a94587e2c91ed4d2bc 187 SMART SM00507 79 132 1.9E-10 T 11-10-2018 IPR003615 HNH nuclease AMK58_03575 6e8fa0b3ad4415a94587e2c91ed4d2bc 187 Pfam PF14279 HNH endonuclease 92 142 1.1E-18 T 11-10-2018 IPR029471 HNH endonuclease 5 AMK58_23035 df52d492a2ce19ab875d0b18ddb3f992 783 SUPERFAMILY SSF53448 470 726 8.44E-47 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_23035 df52d492a2ce19ab875d0b18ddb3f992 783 Pfam PF13641 Glycosyltransferase like family 2 473 703 1.0E-17 T 11-10-2018 AMK58_23035 df52d492a2ce19ab875d0b18ddb3f992 783 Gene3D G3DSA:3.90.550.10 467 707 4.1E-44 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_24605 5f612acce00f3d2b1bc3d13cc1d35503 463 Pfam PF04932 O-Antigen ligase 229 371 5.9E-14 T 11-10-2018 IPR007016 O-antigen ligase-related AMK58_09115 eb4d1d98beb451d67dca27d2be5936bf 270 Gene3D G3DSA:3.40.190.10 52 262 2.3E-8 T 11-10-2018 AMK58_09115 eb4d1d98beb451d67dca27d2be5936bf 270 SUPERFAMILY SSF53850 45 262 1.28E-19 T 11-10-2018 AMK58_09115 eb4d1d98beb451d67dca27d2be5936bf 270 Gene3D G3DSA:3.40.190.10 126 229 2.3E-8 T 11-10-2018 AMK58_09115 eb4d1d98beb451d67dca27d2be5936bf 270 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 52 259 2.1E-6 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMK58_10335 2c26ded3b233f1adc85854608a8b6d83 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 1.8E-58 T 11-10-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 AMK58_10335 2c26ded3b233f1adc85854608a8b6d83 122 Gene3D G3DSA:2.40.150.20 1 122 6.6E-56 T 11-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 AMK58_10335 2c26ded3b233f1adc85854608a8b6d83 122 SMART SM01374 1 122 3.3E-87 T 11-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AMK58_10335 2c26ded3b233f1adc85854608a8b6d83 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 11-10-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMK58_10335 2c26ded3b233f1adc85854608a8b6d83 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 2.0E-56 T 11-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AMK58_10335 2c26ded3b233f1adc85854608a8b6d83 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 28.442 T 11-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AMK58_10335 2c26ded3b233f1adc85854608a8b6d83 122 SUPERFAMILY SSF50193 1 122 3.53E-53 T 11-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 AMK58_04330 2fab8e1ac7ded53a776dc4c7a7a73d56 198 PRINTS PR00354 7Fe ferredoxin signature 55 65 2.6E-5 T 11-10-2018 IPR000813 7Fe ferredoxin GO:0009055 AMK58_04330 2fab8e1ac7ded53a776dc4c7a7a73d56 198 PRINTS PR00354 7Fe ferredoxin signature 82 99 2.6E-5 T 11-10-2018 IPR000813 7Fe ferredoxin GO:0009055 AMK58_04330 2fab8e1ac7ded53a776dc4c7a7a73d56 198 PRINTS PR00354 7Fe ferredoxin signature 65 75 2.6E-5 T 11-10-2018 IPR000813 7Fe ferredoxin GO:0009055 AMK58_04330 2fab8e1ac7ded53a776dc4c7a7a73d56 198 Gene3D G3DSA:3.30.70.20 5 172 5.5E-35 T 11-10-2018 AMK58_04330 2fab8e1ac7ded53a776dc4c7a7a73d56 198 SUPERFAMILY SSF54862 1 180 1.88E-49 T 11-10-2018 AMK58_04330 2fab8e1ac7ded53a776dc4c7a7a73d56 198 Pfam PF13247 4Fe-4S dicluster domain 52 164 6.0E-10 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMK58_04330 2fab8e1ac7ded53a776dc4c7a7a73d56 198 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 87 98 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMK58_04330 2fab8e1ac7ded53a776dc4c7a7a73d56 198 Gene3D G3DSA:3.30.70.20 61 118 5.5E-35 T 11-10-2018 AMK58_03250 fdc9a3fea0cba0822dc510d583242030 1003 Pfam PF07520 Virulence factor SrfB 3 1000 0.0 T 11-10-2018 IPR009216 Virulence factor SrfB AMK58_03250 fdc9a3fea0cba0822dc510d583242030 1003 PIRSF PIRSF034585 2 1003 1.0E-281 T 11-10-2018 IPR009216 Virulence factor SrfB AMK58_06510 e526d710aa884bc323b64c5534dbe0d6 74 Pfam PF09834 Predicted membrane protein (DUF2061) 1 51 2.1E-23 T 11-10-2018 IPR018638 Domain of unknown function DUF2061, membrane AMK58_17095 afbb43c861d1411a8191591a56fec0ce 421 SUPERFAMILY SSF103473 22 402 6.93E-56 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_17095 afbb43c861d1411a8191591a56fec0ce 421 Gene3D G3DSA:1.20.1720.10 22 401 1.4E-93 T 11-10-2018 AMK58_17095 afbb43c861d1411a8191591a56fec0ce 421 Pfam PF07690 Major Facilitator Superfamily 27 367 1.6E-41 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMK58_17095 afbb43c861d1411a8191591a56fec0ce 421 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 22 398 2.1E-62 T 11-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 AMK58_14935 8b1ee813099e6d27dbb2e97d799148ad 213 Pfam PF02570 Precorrin-8X methylmutase 16 209 2.1E-72 T 11-10-2018 IPR003722 Cobalamin biosynthesis precorrin-8X methylmutase CobH/CbiC GO:0009236|GO:0016993 AMK58_14935 8b1ee813099e6d27dbb2e97d799148ad 213 Gene3D G3DSA:3.40.50.10230 2 211 9.6E-83 T 11-10-2018 IPR036588 Precorrin-8X methylmutase CobH/CbiC superfamily GO:0009236|GO:0016993 AMK58_14935 8b1ee813099e6d27dbb2e97d799148ad 213 SUPERFAMILY SSF63965 6 210 8.24E-75 T 11-10-2018 IPR036588 Precorrin-8X methylmutase CobH/CbiC superfamily GO:0009236|GO:0016993 AMK58_18580 59f5832300ff1d0222596fb8730cdb71 406 Gene3D G3DSA:1.10.246.40 2 64 9.6E-8 T 11-10-2018 IPR038215 Transposase, Tn5-like, N-terminal domain superfamily AMK58_18580 59f5832300ff1d0222596fb8730cdb71 406 Gene3D G3DSA:3.90.350.10 71 360 2.0E-67 T 11-10-2018 IPR014736 Transposase, Tn5-like, core AMK58_18580 59f5832300ff1d0222596fb8730cdb71 406 Pfam PF14706 Transposase DNA-binding 7 64 2.2E-23 T 11-10-2018 IPR014735 Transposase, Tn5-like, N-terminal AMK58_18580 59f5832300ff1d0222596fb8730cdb71 406 SUPERFAMILY SSF53098 4 393 7.59E-81 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMK58_11735 d89b314a01ec3ccdb427daa1bedc67a8 272 Gene3D G3DSA:1.10.620.20 4 220 3.0E-19 T 11-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 AMK58_11735 d89b314a01ec3ccdb427daa1bedc67a8 272 SUPERFAMILY SSF47240 4 255 9.42E-46 T 11-10-2018 IPR009078 Ferritin-like superfamily AMK58_28275 aaecc3e09b5e9d3a712a4719435de08c 220 SMART SM00882 4 215 1.6E-69 T 11-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 AMK58_28275 aaecc3e09b5e9d3a712a4719435de08c 220 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 5 213 1.8E-71 T 11-10-2018 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 Reactome: R-HSA-77108 AMK58_28275 aaecc3e09b5e9d3a712a4719435de08c 220 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 16 31 - T 11-10-2018 IPR004163 Coenzyme A transferase binding site GO:0008410 Reactome: R-HSA-77108 AMK58_28275 aaecc3e09b5e9d3a712a4719435de08c 220 Pfam PF01144 Coenzyme A transferase 8 212 4.5E-63 T 11-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 AMK58_28275 aaecc3e09b5e9d3a712a4719435de08c 220 Gene3D G3DSA:3.40.1080.10 1 217 3.0E-77 T 11-10-2018 AMK58_28275 aaecc3e09b5e9d3a712a4719435de08c 220 SUPERFAMILY SSF100950 2 214 2.47E-75 T 11-10-2018 IPR037171 NagB/RpiA transferase-like AMK58_13950 adb678130939f5dc8e1d768ac9105729 162 Pfam PF01899 Na+/H+ ion antiporter subunit 12 160 1.5E-36 T 11-10-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 AMK58_13950 adb678130939f5dc8e1d768ac9105729 162 PIRSF PIRSF019239 1 162 4.2E-35 T 11-10-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 AMK58_11510 5624a1a46aa75848bbb65772563946c7 137 Pfam PF00072 Response regulator receiver domain 13 124 1.8E-12 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_11510 5624a1a46aa75848bbb65772563946c7 137 SMART SM00448 11 125 1.1E-12 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_11510 5624a1a46aa75848bbb65772563946c7 137 Gene3D G3DSA:3.40.50.2300 4 136 2.9E-21 T 11-10-2018 AMK58_11510 5624a1a46aa75848bbb65772563946c7 137 SUPERFAMILY SSF52172 11 131 2.42E-21 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_00135 69606095824dc46a4d542d374ded1678 211 SUPERFAMILY SSF51161 20 204 1.52E-44 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily AMK58_00135 69606095824dc46a4d542d374ded1678 211 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 109 143 2.1E-9 T 11-10-2018 IPR001451 Hexapeptide repeat AMK58_00135 69606095824dc46a4d542d374ded1678 211 Gene3D G3DSA:2.160.10.10 1 208 1.1E-71 T 11-10-2018 AMK58_00135 69606095824dc46a4d542d374ded1678 211 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 118 146 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AMK58_03310 b3ad4b553da574c0863ff9bde777b606 679 SUPERFAMILY SSF54980 384 461 8.63E-18 T 11-10-2018 IPR035647 EF-G domain III/V-like AMK58_03310 b3ad4b553da574c0863ff9bde777b606 679 Gene3D G3DSA:3.40.50.300 3 281 6.0E-49 T 11-10-2018 AMK58_03310 b3ad4b553da574c0863ff9bde777b606 679 Pfam PF14492 Elongation Factor G, domain II 383 454 9.8E-23 T 11-10-2018 AMK58_03310 b3ad4b553da574c0863ff9bde777b606 679 Gene3D G3DSA:3.30.230.10 463 666 3.2E-66 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMK58_03310 b3ad4b553da574c0863ff9bde777b606 679 Pfam PF00009 Elongation factor Tu GTP binding domain 12 273 3.2E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMK58_03310 b3ad4b553da574c0863ff9bde777b606 679 SUPERFAMILY SSF54211 458 577 4.55E-36 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMK58_03310 b3ad4b553da574c0863ff9bde777b606 679 Gene3D G3DSA:2.40.30.10 291 377 3.3E-16 T 11-10-2018 AMK58_03310 b3ad4b553da574c0863ff9bde777b606 679 Pfam PF03764 Elongation factor G, domain IV 458 575 8.4E-38 T 11-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 AMK58_03310 b3ad4b553da574c0863ff9bde777b606 679 Gene3D G3DSA:3.30.70.870 384 462 5.1E-23 T 11-10-2018 AMK58_03310 b3ad4b553da574c0863ff9bde777b606 679 SUPERFAMILY SSF52540 6 277 2.5E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_03310 b3ad4b553da574c0863ff9bde777b606 679 SMART SM00889 459 576 2.5E-55 T 11-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 AMK58_03310 b3ad4b553da574c0863ff9bde777b606 679 SMART SM00838 578 668 1.4E-13 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like AMK58_03310 b3ad4b553da574c0863ff9bde777b606 679 Gene3D G3DSA:3.30.70.240 582 655 3.2E-66 T 11-10-2018 AMK58_03310 b3ad4b553da574c0863ff9bde777b606 679 Pfam PF00679 Elongation factor G C-terminus 578 667 8.4E-19 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like AMK58_03310 b3ad4b553da574c0863ff9bde777b606 679 SUPERFAMILY SSF50447 247 373 7.88E-18 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMK58_03310 b3ad4b553da574c0863ff9bde777b606 679 SUPERFAMILY SSF54980 581 669 3.93E-18 T 11-10-2018 IPR035647 EF-G domain III/V-like AMK58_19355 38f9f70d08f9f7cd66610b89c031cefc 224 Pfam PF01351 Ribonuclease HII 34 215 5.1E-40 T 11-10-2018 IPR024567 Ribonuclease HII/HIII domain AMK58_19355 38f9f70d08f9f7cd66610b89c031cefc 224 Gene3D G3DSA:3.30.420.10 20 223 1.8E-69 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMK58_19355 38f9f70d08f9f7cd66610b89c031cefc 224 SUPERFAMILY SSF53098 28 221 6.37E-61 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMK58_19355 38f9f70d08f9f7cd66610b89c031cefc 224 Hamap MF_00052_B Ribonuclease HII [rnhB]. 32 216 34.313 T 11-10-2018 IPR022898 Ribonuclease HII GO:0004523 AMK58_12545 c0c51c6616a5c27eded4fda662bfdff9 170 Pfam PF06776 Invasion associated locus B (IalB) protein 38 165 3.2E-6 T 11-10-2018 IPR010642 Invasion protein B AMK58_12545 c0c51c6616a5c27eded4fda662bfdff9 170 Gene3D G3DSA:2.60.40.1880 35 170 4.9E-7 T 11-10-2018 IPR038696 Invasion protein B superfamily AMK58_04380 c369c1ed9637efd98ea2989baa096878 74 PRINTS PR00124 ATP synthase C subunit signature 47 72 7.6E-28 T 11-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_04380 c369c1ed9637efd98ea2989baa096878 74 PRINTS PR00124 ATP synthase C subunit signature 9 28 7.6E-28 T 11-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_04380 c369c1ed9637efd98ea2989baa096878 74 PRINTS PR00124 ATP synthase C subunit signature 30 45 7.6E-28 T 11-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_04380 c369c1ed9637efd98ea2989baa096878 74 Hamap MF_01396 ATP synthase subunit c [atpH]. 4 72 14.368 T 11-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_04380 c369c1ed9637efd98ea2989baa096878 74 ProSitePatterns PS00605 ATP synthase c subunit signature. 37 58 - T 11-10-2018 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_04380 c369c1ed9637efd98ea2989baa096878 74 SUPERFAMILY SSF81333 5 74 5.89E-18 T 11-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily AMK58_04380 c369c1ed9637efd98ea2989baa096878 74 Pfam PF00137 ATP synthase subunit C 10 71 3.1E-12 T 11-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 AMK58_04380 c369c1ed9637efd98ea2989baa096878 74 Gene3D G3DSA:1.20.20.10 3 74 3.9E-25 T 11-10-2018 IPR038662 F1F0 ATP synthase subunit C superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMK58_17190 ed68b9da9d5b050add46758e43fd84fb 420 Gene3D G3DSA:3.90.1150.10 15 410 1.7E-166 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_17190 ed68b9da9d5b050add46758e43fd84fb 420 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 14 419 7.5E-173 T 11-10-2018 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 AMK58_17190 ed68b9da9d5b050add46758e43fd84fb 420 Gene3D G3DSA:3.40.640.10 49 309 1.7E-166 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_17190 ed68b9da9d5b050add46758e43fd84fb 420 Pfam PF00266 Aminotransferase class-V 38 407 2.7E-142 T 11-10-2018 IPR000192 Aminotransferase class V domain AMK58_17190 ed68b9da9d5b050add46758e43fd84fb 420 SUPERFAMILY SSF53383 10 414 1.18E-122 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_22735 06363666fe08366f9f5694015e8b8258 216 SUPERFAMILY SSF51569 11 212 1.12E-54 T 11-10-2018 AMK58_22735 06363666fe08366f9f5694015e8b8258 216 Pfam PF01081 KDPG and KHG aldolase 14 184 3.5E-28 T 11-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 AMK58_22735 06363666fe08366f9f5694015e8b8258 216 Gene3D G3DSA:3.20.20.70 10 214 9.4E-59 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_19830 984509f4e6259779a78516edb8b3d474 266 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 223 238 7.4E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMK58_19830 984509f4e6259779a78516edb8b3d474 266 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 238 254 7.4E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMK58_19830 984509f4e6259779a78516edb8b3d474 266 SUPERFAMILY SSF51182 23 180 1.25E-11 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily AMK58_19830 984509f4e6259779a78516edb8b3d474 266 SMART SM00342 172 254 1.5E-19 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMK58_19830 984509f4e6259779a78516edb8b3d474 266 SUPERFAMILY SSF46689 213 255 2.82E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_19830 984509f4e6259779a78516edb8b3d474 266 Gene3D G3DSA:1.10.10.60 219 260 4.4E-8 T 11-10-2018 AMK58_19830 984509f4e6259779a78516edb8b3d474 266 Gene3D G3DSA:1.10.10.60 155 217 1.2E-7 T 11-10-2018 AMK58_19830 984509f4e6259779a78516edb8b3d474 266 Pfam PF02311 AraC-like ligand binding domain 22 143 1.5E-7 T 11-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AMK58_19830 984509f4e6259779a78516edb8b3d474 266 Pfam PF12833 Helix-turn-helix domain 179 255 7.3E-20 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMK58_19830 984509f4e6259779a78516edb8b3d474 266 SUPERFAMILY SSF46689 168 207 2.27E-5 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_18475 f03da34653c6f24fccfd5ec2a6185258 333 Pfam PF00248 Aldo/keto reductase family 16 306 3.2E-64 T 11-10-2018 IPR023210 NADP-dependent oxidoreductase domain AMK58_18475 f03da34653c6f24fccfd5ec2a6185258 333 SUPERFAMILY SSF51430 1 308 9.17E-88 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMK58_18475 f03da34653c6f24fccfd5ec2a6185258 333 Gene3D G3DSA:3.20.20.100 1 331 3.7E-104 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMK58_18475 f03da34653c6f24fccfd5ec2a6185258 333 PRINTS PR00069 Aldo-keto reductase signature 240 264 4.9E-5 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMK58_18475 f03da34653c6f24fccfd5ec2a6185258 333 PRINTS PR00069 Aldo-keto reductase signature 109 127 4.9E-5 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMK58_18475 f03da34653c6f24fccfd5ec2a6185258 333 PRINTS PR00069 Aldo-keto reductase signature 140 157 4.9E-5 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMK58_05230 6234e1bad04ba6354ce58939c24307fb 800 SMART SM00283 540 794 4.5E-48 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_05230 6234e1bad04ba6354ce58939c24307fb 800 SMART SM01358 26 293 1.3E-15 T 11-10-2018 IPR032255 Helical bimodular sensor domain AMK58_05230 6234e1bad04ba6354ce58939c24307fb 800 Pfam PF16591 Helical bimodular sensor domain 26 247 6.5E-10 T 11-10-2018 IPR032255 Helical bimodular sensor domain AMK58_05230 6234e1bad04ba6354ce58939c24307fb 800 Pfam PF00672 HAMP domain 450 497 2.8E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_05230 6234e1bad04ba6354ce58939c24307fb 800 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 613 764 3.4E-30 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_05230 6234e1bad04ba6354ce58939c24307fb 800 SMART SM00304 450 503 3.5E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMK58_05230 6234e1bad04ba6354ce58939c24307fb 800 Gene3D G3DSA:1.20.1440.210 122 250 2.0E-6 T 11-10-2018 AMK58_05230 6234e1bad04ba6354ce58939c24307fb 800 Gene3D G3DSA:1.20.1440.210 43 279 2.0E-6 T 11-10-2018 AMK58_05230 6234e1bad04ba6354ce58939c24307fb 800 SUPERFAMILY SSF58104 470 793 1.22E-62 T 11-10-2018 AMK58_05230 6234e1bad04ba6354ce58939c24307fb 800 Gene3D G3DSA:1.10.287.950 499 800 1.7E-54 T 11-10-2018 AMK58_05230 6234e1bad04ba6354ce58939c24307fb 800 Gene3D G3DSA:1.10.8.500 450 498 1.2E-12 T 11-10-2018 AMK58_01260 09c4982b862db399eeb644b317c0e971 123 Pfam PF00453 Ribosomal protein L20 3 109 2.9E-49 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_01260 09c4982b862db399eeb644b317c0e971 123 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_01260 09c4982b862db399eeb644b317c0e971 123 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 20 72 3.0E-19 T 11-10-2018 AMK58_01260 09c4982b862db399eeb644b317c0e971 123 Gene3D G3DSA:1.10.1900.20 56 119 2.8E-29 T 11-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_01260 09c4982b862db399eeb644b317c0e971 123 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 29.761 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_01260 09c4982b862db399eeb644b317c0e971 123 SUPERFAMILY SSF74731 3 117 1.7E-49 T 11-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_01260 09c4982b862db399eeb644b317c0e971 123 PRINTS PR00062 Ribosomal protein L20 signature 75 101 2.5E-38 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_01260 09c4982b862db399eeb644b317c0e971 123 PRINTS PR00062 Ribosomal protein L20 signature 42 71 2.5E-38 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_01260 09c4982b862db399eeb644b317c0e971 123 PRINTS PR00062 Ribosomal protein L20 signature 12 41 2.5E-38 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_01260 09c4982b862db399eeb644b317c0e971 123 Gene3D G3DSA:1.10.720.90 2 55 2.4E-24 T 11-10-2018 AMK58_01260 09c4982b862db399eeb644b317c0e971 123 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 113 3.2E-49 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_20720 502a5d5739f31f43ace0a4eae8db803c 139 SUPERFAMILY SSF47598 14 57 1.89E-8 T 11-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 AMK58_07235 9e8f6360cb71382bc844484df186c904 301 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 285 3.3E-54 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_07305 ca9174d296bd7dc93236d376903e952a 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 203 223 1.7E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_07305 ca9174d296bd7dc93236d376903e952a 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 1.7E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_07305 ca9174d296bd7dc93236d376903e952a 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.7E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_07305 ca9174d296bd7dc93236d376903e952a 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 1.7E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_07305 ca9174d296bd7dc93236d376903e952a 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 1.7E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_07305 ca9174d296bd7dc93236d376903e952a 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 1.7E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_07305 ca9174d296bd7dc93236d376903e952a 236 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMK58_07305 ca9174d296bd7dc93236d376903e952a 236 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 1.4E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_07305 ca9174d296bd7dc93236d376903e952a 236 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 1.4E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_07305 ca9174d296bd7dc93236d376903e952a 236 SUPERFAMILY SSF51735 1 224 3.78E-65 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_07305 ca9174d296bd7dc93236d376903e952a 236 Gene3D G3DSA:3.40.50.720 1 236 4.0E-71 T 11-10-2018 AMK58_07305 ca9174d296bd7dc93236d376903e952a 236 Pfam PF00106 short chain dehydrogenase 8 200 2.4E-52 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_14755 1779d02407fec1d27cc9007ba5f3f5e1 151 Pfam PF07883 Cupin domain 70 138 1.7E-14 T 11-10-2018 IPR013096 Cupin 2, conserved barrel AMK58_14755 1779d02407fec1d27cc9007ba5f3f5e1 151 Gene3D G3DSA:2.60.120.10 29 148 7.3E-17 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_14755 1779d02407fec1d27cc9007ba5f3f5e1 151 SUPERFAMILY SSF51182 64 141 3.85E-15 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily AMK58_08060 176759a5a47e840fb28918437296d0c9 614 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 1 614 33.868 T 11-10-2018 IPR023051 Potassium uptake protein, low affinity, Kup AMK58_08060 176759a5a47e840fb28918437296d0c9 614 Pfam PF02705 K+ potassium transporter 6 536 1.2E-210 T 11-10-2018 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 AMK58_16220 d5d037254d1dde8581131e666c0a07b4 88 TIGRFAM TIGR02229 caa3_sub_IV: caa(3)-type oxidase, subunit IV 5 88 5.8E-23 T 11-10-2018 IPR011743 Caa(3)-type oxidase, subunit IV AMK58_16220 d5d037254d1dde8581131e666c0a07b4 88 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 9 78 4.2E-10 T 11-10-2018 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 AMK58_28835 e6486fe4f2c16148548966ea5586c1bb 361 SUPERFAMILY SSF53448 42 248 2.17E-40 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_28835 e6486fe4f2c16148548966ea5586c1bb 361 Pfam PF00535 Glycosyl transferase family 2 27 193 3.1E-19 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMK58_28835 e6486fe4f2c16148548966ea5586c1bb 361 Gene3D G3DSA:3.90.550.10 26 267 6.0E-40 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_15005 86cea87c8cb5734779cfd21cc638a389 162 SUPERFAMILY SSF52172 2 117 3.98E-20 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_15005 86cea87c8cb5734779cfd21cc638a389 162 SMART SM00448 1 110 3.9E-10 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_15005 86cea87c8cb5734779cfd21cc638a389 162 Pfam PF00072 Response regulator receiver domain 4 110 1.3E-11 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_15005 86cea87c8cb5734779cfd21cc638a389 162 Gene3D G3DSA:3.40.50.2300 1 117 2.0E-26 T 11-10-2018 AMK58_04855 f609cf93f67d9acd4284d9be36c7d8f7 323 Pfam PF03481 Putative GTP-binding controlling metal-binding 202 320 4.8E-22 T 11-10-2018 IPR005145 Putative GTP-binding controlling metal-binding domain AMK58_04855 f609cf93f67d9acd4284d9be36c7d8f7 323 SUPERFAMILY SSF55821 14 211 2.04E-62 T 11-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily AMK58_04855 f609cf93f67d9acd4284d9be36c7d8f7 323 Gene3D G3DSA:3.90.870.10 7 213 1.7E-75 T 11-10-2018 AMK58_04855 f609cf93f67d9acd4284d9be36c7d8f7 323 Gene3D G3DSA:3.40.50.11030 214 323 5.0E-18 T 11-10-2018 IPR038385 Threonylcarbamoyl-AMP synthase, C-terminal domain superfamily AMK58_04855 f609cf93f67d9acd4284d9be36c7d8f7 323 Pfam PF01300 Telomere recombination 21 198 1.6E-56 T 11-10-2018 IPR006070 YrdC-like domain GO:0003725 AMK58_04855 f609cf93f67d9acd4284d9be36c7d8f7 323 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 15 209 1.6E-57 T 11-10-2018 IPR006070 YrdC-like domain GO:0003725 AMK58_04855 f609cf93f67d9acd4284d9be36c7d8f7 323 PIRSF PIRSF004930 8 323 3.3E-108 T 11-10-2018 IPR010923 tRNA threonylcarbamoyladenosine biosynthesis protein SUA5 AMK58_09565 ac9c206f7626250f633a438c55f3d7b6 252 SUPERFAMILY SSF53335 13 139 2.82E-17 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_09565 ac9c206f7626250f633a438c55f3d7b6 252 Gene3D G3DSA:3.40.50.150 2 213 2.1E-34 T 11-10-2018 AMK58_11580 bbdd7310ad974cb42534c12937e9559e 380 SUPERFAMILY SSF53448 46 299 1.64E-39 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_11580 bbdd7310ad974cb42534c12937e9559e 380 Gene3D G3DSA:3.90.550.10 30 242 6.1E-39 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_11580 bbdd7310ad974cb42534c12937e9559e 380 Pfam PF00535 Glycosyl transferase family 2 49 209 2.8E-32 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMK58_27800 1865ca6d9e7f21141fb4904b13212b51 91 Gene3D G3DSA:3.40.50.2000 1 56 4.7E-15 T 11-10-2018 AMK58_27800 1865ca6d9e7f21141fb4904b13212b51 91 Pfam PF13844 Glycosyl transferase family 41 2 74 8.1E-8 T 11-10-2018 IPR029489 O-GlcNAc transferase, C-terminal KEGG: 00514+2.4.1.255|MetaCyc: PWY-7437|Reactome: R-HSA-3214847|Reactome: R-HSA-5689603 AMK58_27485 9b54237d15321acfe28f7070be303641 281 Gene3D G3DSA:3.90.25.10 135 267 2.5E-90 T 11-10-2018 AMK58_27485 9b54237d15321acfe28f7070be303641 281 SUPERFAMILY SSF51735 2 247 6.58E-62 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_27485 9b54237d15321acfe28f7070be303641 281 Gene3D G3DSA:3.40.50.720 4 265 2.5E-90 T 11-10-2018 AMK58_27485 9b54237d15321acfe28f7070be303641 281 Pfam PF13460 NAD(P)H-binding 7 181 3.5E-26 T 11-10-2018 IPR016040 NAD(P)-binding domain AMK58_17695 42edc47316fc36634354489e281806ad 80 Gene3D G3DSA:3.30.70.920 1 75 1.3E-18 T 11-10-2018 AMK58_17695 42edc47316fc36634354489e281806ad 80 Pfam PF01037 Lrp/AsnC ligand binding domain 6 77 3.1E-14 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMK58_17695 42edc47316fc36634354489e281806ad 80 SUPERFAMILY SSF54909 3 78 1.61E-15 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel AMK58_05310 2fe40cfc369c5159067252f7a4a7d5e6 98 Pfam PF11740 Plasmid replication region DNA-binding N-term 10 46 5.2E-6 T 11-10-2018 IPR021104 KfrA, N-terminal DNA-binding domain AMK58_27475 996ce69c354c23bab7ce2abecc959a36 400 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 71 385 1.4E-74 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMK58_27475 996ce69c354c23bab7ce2abecc959a36 400 Gene3D G3DSA:1.10.287.470 130 189 7.9E-77 T 11-10-2018 AMK58_27475 996ce69c354c23bab7ce2abecc959a36 400 SUPERFAMILY SSF111369 85 301 4.18E-47 T 11-10-2018 AMK58_27475 996ce69c354c23bab7ce2abecc959a36 400 Gene3D G3DSA:2.40.50.100 95 223 7.9E-77 T 11-10-2018 AMK58_27475 996ce69c354c23bab7ce2abecc959a36 400 Gene3D G3DSA:2.40.30.170 82 306 7.9E-77 T 11-10-2018 AMK58_27475 996ce69c354c23bab7ce2abecc959a36 400 Gene3D G3DSA:2.40.420.20 307 383 7.9E-77 T 11-10-2018 AMK58_27475 996ce69c354c23bab7ce2abecc959a36 400 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 93 296 5.9E-34 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMK58_19210 9e7c65cf7f66250996ebd78488f650c5 312 Pfam PF00892 EamA-like transporter family 31 159 4.6E-11 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_19210 9e7c65cf7f66250996ebd78488f650c5 312 Pfam PF00892 EamA-like transporter family 173 304 2.1E-11 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_19210 9e7c65cf7f66250996ebd78488f650c5 312 SUPERFAMILY SSF103481 80 162 3.01E-8 T 11-10-2018 AMK58_19210 9e7c65cf7f66250996ebd78488f650c5 312 SUPERFAMILY SSF103481 209 305 2.22E-6 T 11-10-2018 AMK58_04490 287dd82a51831c6b0674fcd672e60116 292 Gene3D G3DSA:3.40.630.40 3 287 2.4E-100 T 11-10-2018 AMK58_04490 287dd82a51831c6b0674fcd672e60116 292 SUPERFAMILY SSF53187 13 283 5.65E-87 T 11-10-2018 AMK58_04490 287dd82a51831c6b0674fcd672e60116 292 Pfam PF05013 N-formylglutamate amidohydrolase 25 256 2.7E-74 T 11-10-2018 IPR007709 N-formylglutamate amidohydrolase AMK58_14785 f26166d9870d26f8cdac9e613fc8c825 310 Gene3D G3DSA:2.40.440.10 8 192 9.8E-50 T 11-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMK58_14785 f26166d9870d26f8cdac9e613fc8c825 310 Pfam PF03734 L,D-transpeptidase catalytic domain 44 173 5.4E-20 T 11-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AMK58_14785 f26166d9870d26f8cdac9e613fc8c825 310 SUPERFAMILY SSF141523 43 173 5.49E-30 T 11-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMK58_24610 bc52bc1111c5bd46d10b129aeeb7d69a 477 Pfam PF13440 Polysaccharide biosynthesis protein 25 317 1.1E-18 T 11-10-2018 AMK58_24610 bc52bc1111c5bd46d10b129aeeb7d69a 477 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 324 451 1.1E-7 T 11-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain AMK58_08380 3d1cceda8fe364e2fe745c548b501631 342 Pfam PF12706 Beta-lactamase superfamily domain 25 146 1.7E-7 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMK58_08380 3d1cceda8fe364e2fe745c548b501631 342 SUPERFAMILY SSF56281 19 324 8.26E-60 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMK58_08380 3d1cceda8fe364e2fe745c548b501631 342 TIGRFAM TIGR04122 Xnuc_lig_assoc: putative exonuclease, DNA ligase-associated 14 340 2.7E-144 T 11-10-2018 IPR026360 Putative exonuclease, DNA ligase-associated AMK58_08380 3d1cceda8fe364e2fe745c548b501631 342 Gene3D G3DSA:3.60.15.10 16 181 1.5E-21 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMK58_06945 abd6fa7a36e79c0ce463516398e3c03c 432 SUPERFAMILY SSF103473 11 414 1.09E-51 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_06945 abd6fa7a36e79c0ce463516398e3c03c 432 Gene3D G3DSA:1.20.1250.20 12 416 9.9E-49 T 11-10-2018 AMK58_06945 abd6fa7a36e79c0ce463516398e3c03c 432 TIGRFAM TIGR04259 oxa_formateAnti: oxalate/formate antiporter 15 417 9.4E-197 T 11-10-2018 IPR026355 Oxalate/formate antiporter GO:0016021|GO:0019531|GO:0019532 AMK58_06945 abd6fa7a36e79c0ce463516398e3c03c 432 Pfam PF07690 Major Facilitator Superfamily 24 272 1.0E-22 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMK58_07295 3a9f141adbf15d16399a0faeed21be39 146 Pfam PF14325 Domain of unknown function (DUF4383) 4 130 7.5E-37 T 11-10-2018 IPR025492 Protein of unknown function DUF4383 AMK58_25115 dd8034d9c09df8034e0256ff1f524b40 340 Pfam PF00482 Type II secretion system (T2SS), protein F 173 300 2.2E-16 T 11-10-2018 IPR018076 Type II secretion system F domain AMK58_22425 519ba9bf8b83b71909081b10f41161c0 144 TIGRFAM TIGR00526 folB_dom: FolB domain 34 137 1.5E-13 T 11-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AMK58_22425 519ba9bf8b83b71909081b10f41161c0 144 Gene3D G3DSA:3.30.1130.10 7 140 1.2E-37 T 11-10-2018 AMK58_22425 519ba9bf8b83b71909081b10f41161c0 144 Pfam PF02152 Dihydroneopterin aldolase 24 133 2.3E-19 T 11-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AMK58_22425 519ba9bf8b83b71909081b10f41161c0 144 SUPERFAMILY SSF55620 23 136 4.23E-24 T 11-10-2018 AMK58_22425 519ba9bf8b83b71909081b10f41161c0 144 SMART SM00905 24 134 5.6E-19 T 11-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AMK58_08020 128a59da16a98c721d942ef4110644e4 460 SMART SM00564 216 247 0.054 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMK58_08020 128a59da16a98c721d942ef4110644e4 460 SMART SM00564 312 343 50.0 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMK58_08020 128a59da16a98c721d942ef4110644e4 460 SMART SM00564 261 292 290.0 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMK58_08020 128a59da16a98c721d942ef4110644e4 460 SMART SM00564 350 381 520.0 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMK58_08020 128a59da16a98c721d942ef4110644e4 460 SMART SM00564 400 431 0.013 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMK58_08020 128a59da16a98c721d942ef4110644e4 460 SMART SM00564 130 161 0.14 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMK58_08020 128a59da16a98c721d942ef4110644e4 460 SMART SM00564 175 207 0.0092 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMK58_08020 128a59da16a98c721d942ef4110644e4 460 SUPERFAMILY SSF50998 77 450 1.96E-81 T 11-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily AMK58_08020 128a59da16a98c721d942ef4110644e4 460 Pfam PF13360 PQQ-like domain 143 379 4.6E-63 T 11-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat AMK58_08020 128a59da16a98c721d942ef4110644e4 460 Pfam PF13360 PQQ-like domain 398 459 4.2E-7 T 11-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat AMK58_08020 128a59da16a98c721d942ef4110644e4 460 Gene3D G3DSA:2.130.10.10 100 460 8.9E-90 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 AMK58_29175 e71ca9e0c50abcfc8a38d842f2ca0011 158 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 23 154 6.5E-11 T 11-10-2018 IPR009936 Protein of unknown function DUF1468 AMK58_05560 14104e4fbc4c343e3eea7f9b484d26b9 225 Pfam PF09335 SNARE associated Golgi protein 34 164 5.4E-17 T 11-10-2018 IPR032816 SNARE associated Golgi protein AMK58_16515 8261a921c952a26be249b47930870b38 248 Pfam PF01177 Asp/Glu/Hydantoin racemase 4 209 1.9E-11 T 11-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMK58_16515 8261a921c952a26be249b47930870b38 248 Gene3D G3DSA:3.40.50.12500 1 245 9.5E-86 T 11-10-2018 AMK58_15315 e8d4ed7334ed942df148929f54024d70 174 Gene3D G3DSA:1.10.101.10 101 173 1.9E-15 T 11-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 AMK58_15315 e8d4ed7334ed942df148929f54024d70 174 SUPERFAMILY SSF47090 107 172 7.53E-17 T 11-10-2018 IPR036365 PGBD-like superfamily AMK58_15315 e8d4ed7334ed942df148929f54024d70 174 Pfam PF01471 Putative peptidoglycan binding domain 116 170 1.0E-14 T 11-10-2018 IPR002477 Peptidoglycan binding-like AMK58_15315 e8d4ed7334ed942df148929f54024d70 174 Pfam PF11860 N-acetylmuramidase 45 101 3.5E-5 T 11-10-2018 IPR024408 N-acetylmuramidase AMK58_13185 c18f8a2c3e0c343eaea9927a14371d7a 270 SUPERFAMILY SSF56219 34 270 6.41E-40 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMK58_13185 c18f8a2c3e0c343eaea9927a14371d7a 270 Gene3D G3DSA:3.60.10.10 41 270 6.4E-49 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMK58_13185 c18f8a2c3e0c343eaea9927a14371d7a 270 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 45 260 1.4E-16 T 11-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase AMK58_02195 134d089a37d25e8454fa5d2fb0126c0e 78 Gene3D G3DSA:2.20.25.10 26 77 2.4E-24 T 11-10-2018 AMK58_02195 134d089a37d25e8454fa5d2fb0126c0e 78 Hamap MF_01187 UPF0434 protein YcaR [ycaR]. 19 72 28.056 T 11-10-2018 IPR038053 Uncharacterised protein family UPF0434 AMK58_02195 134d089a37d25e8454fa5d2fb0126c0e 78 SUPERFAMILY SSF158997 19 72 3.27E-21 T 11-10-2018 AMK58_02195 134d089a37d25e8454fa5d2fb0126c0e 78 Pfam PF03966 Trm112p-like protein 20 59 3.4E-10 T 11-10-2018 IPR005651 Trm112-like AMK58_27835 f153583dac85daddd6d59dfc610bb275 150 SUPERFAMILY SSF46626 27 148 3.56E-20 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_27835 f153583dac85daddd6d59dfc610bb275 150 Pfam PF00034 Cytochrome c 50 134 2.9E-8 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_27835 f153583dac85daddd6d59dfc610bb275 150 Gene3D G3DSA:1.10.760.10 1 150 1.5E-39 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_28710 f153583dac85daddd6d59dfc610bb275 150 SUPERFAMILY SSF46626 27 148 3.56E-20 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_28710 f153583dac85daddd6d59dfc610bb275 150 Pfam PF00034 Cytochrome c 50 134 2.9E-8 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_28710 f153583dac85daddd6d59dfc610bb275 150 Gene3D G3DSA:1.10.760.10 1 150 1.5E-39 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_02100 c427d4981cb8427db7ef6bac99534c37 438 Pfam PF01029 NusB family 8 127 5.7E-22 T 11-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 AMK58_02100 c427d4981cb8427db7ef6bac99534c37 438 SUPERFAMILY SSF48013 8 149 4.91E-29 T 11-10-2018 IPR035926 NusB-like superfamily AMK58_02100 c427d4981cb8427db7ef6bac99534c37 438 Gene3D G3DSA:1.10.940.10 4 144 1.5E-32 T 11-10-2018 IPR035926 NusB-like superfamily AMK58_02100 c427d4981cb8427db7ef6bac99534c37 438 Pfam PF01189 16S rRNA methyltransferase RsmB/F 239 434 1.0E-48 T 11-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 AMK58_02100 c427d4981cb8427db7ef6bac99534c37 438 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 242 252 8.0E-26 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AMK58_02100 c427d4981cb8427db7ef6bac99534c37 438 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 213 227 8.0E-26 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AMK58_02100 c427d4981cb8427db7ef6bac99534c37 438 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 353 369 8.0E-26 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AMK58_02100 c427d4981cb8427db7ef6bac99534c37 438 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 418 435 8.0E-26 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AMK58_02100 c427d4981cb8427db7ef6bac99534c37 438 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 303 315 8.0E-26 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AMK58_02100 c427d4981cb8427db7ef6bac99534c37 438 SUPERFAMILY SSF53335 145 435 7.9E-62 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_02100 c427d4981cb8427db7ef6bac99534c37 438 Gene3D G3DSA:3.40.50.150 146 435 1.7E-65 T 11-10-2018 AMK58_20225 96ff958f7758dfee742b6b3295a53c62 397 Pfam PF07690 Major Facilitator Superfamily 9 324 4.5E-37 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMK58_20225 96ff958f7758dfee742b6b3295a53c62 397 SUPERFAMILY SSF103473 3 380 7.85E-59 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_20225 96ff958f7758dfee742b6b3295a53c62 397 Gene3D G3DSA:1.20.1250.20 2 378 9.6E-49 T 11-10-2018 AMK58_15095 2e489076d3d42aa237e2930a9ed28239 415 Pfam PF00999 Sodium/hydrogen exchanger family 10 408 5.1E-56 T 11-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AMK58_15095 2e489076d3d42aa237e2930a9ed28239 415 Gene3D G3DSA:1.20.1530.20 7 413 1.8E-12 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily AMK58_10220 f08404f4de5cfc34f8eefeb11e1adf12 265 Pfam PF10002 Predicted membrane protein (DUF2243) 21 158 9.1E-47 T 11-10-2018 IPR018719 Protein of unknown function DUF2243, membrane AMK58_08025 8d5392fd7e95611d7a8adcaa70d34b77 214 Pfam PF09976 Tetratricopeptide repeat-like domain 21 197 5.0E-6 T 11-10-2018 IPR018704 Tetratricopeptide repeat-like domain Reactome: R-HSA-192823|Reactome: R-HSA-381038|Reactome: R-HSA-381426|Reactome: R-HSA-6798695|Reactome: R-HSA-8957275 AMK58_28375 1b9a4976fa594be7e0f5272e41bf33d7 82 Pfam PF13586 Transposase DDE domain 25 67 3.4E-8 T 11-10-2018 IPR025668 Transposase DDE domain AMK58_17685 95db034e2f1cd0f1f261e3b8d2e5a454 180 Pfam PF00857 Isochorismatase family 8 157 1.9E-30 T 11-10-2018 IPR000868 Isochorismatase-like GO:0003824 AMK58_17685 95db034e2f1cd0f1f261e3b8d2e5a454 180 SUPERFAMILY SSF52499 1 180 1.44E-47 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 AMK58_17685 95db034e2f1cd0f1f261e3b8d2e5a454 180 Gene3D G3DSA:3.40.50.850 1 180 1.2E-53 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 AMK58_28905 e026a671796f2d508bf7190a690cc386 373 Pfam PF01266 FAD dependent oxidoreductase 5 370 1.8E-61 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMK58_28905 e026a671796f2d508bf7190a690cc386 373 Gene3D G3DSA:3.50.50.60 5 364 2.2E-137 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_28905 e026a671796f2d508bf7190a690cc386 373 SUPERFAMILY SSF51905 4 326 9.5E-40 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_28905 e026a671796f2d508bf7190a690cc386 373 Gene3D G3DSA:3.30.9.10 86 326 2.2E-137 T 11-10-2018 AMK58_06235 7f0c3784d73e922c24632b5eaeaccd41 285 Pfam PF01738 Dienelactone hydrolase family 75 282 3.2E-48 T 11-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 AMK58_06235 7f0c3784d73e922c24632b5eaeaccd41 285 SUPERFAMILY SSF53474 62 284 2.21E-39 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_06235 7f0c3784d73e922c24632b5eaeaccd41 285 Gene3D G3DSA:3.40.50.1820 50 284 1.2E-53 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_27045 7c920d4d1a8be23d36cd764b2d17b10f 280 Gene3D G3DSA:2.60.120.180 5 249 2.3E-42 T 11-10-2018 IPR013319 Glycoside hydrolase family 11/12 GO:0004553 MetaCyc: PWY-6717|MetaCyc: PWY-6784 AMK58_27045 7c920d4d1a8be23d36cd764b2d17b10f 280 Pfam PF01670 Glycosyl hydrolase family 12 68 247 6.3E-13 T 11-10-2018 IPR002594 Glycoside hydrolase family 12 GO:0000272|GO:0008810 AMK58_27045 7c920d4d1a8be23d36cd764b2d17b10f 280 SUPERFAMILY SSF49899 5 246 4.75E-20 T 11-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily AMK58_22135 d6f5c393eaca777dfbf3ac114fc9e566 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 281 2.4E-7 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_22135 d6f5c393eaca777dfbf3ac114fc9e566 296 Gene3D G3DSA:1.10.3720.10 24 292 5.2E-55 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_22135 d6f5c393eaca777dfbf3ac114fc9e566 296 SUPERFAMILY SSF161098 23 286 2.43E-50 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_11155 db02c080075c44ff9cd5129c9954e069 778 SUPERFAMILY SSF82866 609 760 3.01E-18 T 11-10-2018 AMK58_11155 db02c080075c44ff9cd5129c9954e069 778 SUPERFAMILY SSF82866 186 390 1.83E-14 T 11-10-2018 AMK58_10585 c880a02d260ca4251d8e8a2f7d65ac02 379 TIGRFAM TIGR03408 urea_trans_UrtC: urea ABC transporter, permease protein UrtC 40 355 1.4E-134 T 11-10-2018 IPR017778 ABC transporter, urea, permease protein, UrtC AMK58_10585 c880a02d260ca4251d8e8a2f7d65ac02 379 Pfam PF02653 Branched-chain amino acid transport system / permease component 50 344 9.4E-40 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_08405 bc84ca2bd14d502e1feec4f264f0e0dd 1436 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 1081 1436 4.9E-61 T 11-10-2018 IPR007452 Translocation and assembly module TamB AMK58_03430 fc8fb93a9b1c826555092cc47fce4401 327 SUPERFAMILY SSF51735 2 239 2.0E-66 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_03430 fc8fb93a9b1c826555092cc47fce4401 327 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 3.4E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_03430 fc8fb93a9b1c826555092cc47fce4401 327 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 3.4E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_03430 fc8fb93a9b1c826555092cc47fce4401 327 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 3.4E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_03430 fc8fb93a9b1c826555092cc47fce4401 327 Gene3D G3DSA:3.40.50.720 1 263 1.9E-65 T 11-10-2018 AMK58_03430 fc8fb93a9b1c826555092cc47fce4401 327 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMK58_03430 fc8fb93a9b1c826555092cc47fce4401 327 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 185 0.006 T 11-10-2018 AMK58_03430 fc8fb93a9b1c826555092cc47fce4401 327 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 3.0E-23 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_03430 fc8fb93a9b1c826555092cc47fce4401 327 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 3.0E-23 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_03430 fc8fb93a9b1c826555092cc47fce4401 327 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 3.0E-23 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_03430 fc8fb93a9b1c826555092cc47fce4401 327 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 3.0E-23 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_03430 fc8fb93a9b1c826555092cc47fce4401 327 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.0E-23 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_03430 fc8fb93a9b1c826555092cc47fce4401 327 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 3.0E-23 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_03430 fc8fb93a9b1c826555092cc47fce4401 327 Pfam PF00106 short chain dehydrogenase 8 193 1.8E-46 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_11675 aed4a1be34b2ae0648f7504a47ffb6a2 411 SUPERFAMILY SSF53955 230 384 3.09E-6 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily AMK58_11675 aed4a1be34b2ae0648f7504a47ffb6a2 411 Gene3D G3DSA:1.20.141.10 229 402 2.8E-6 T 11-10-2018 AMK58_21125 9af8908cad64c122857cac51aa7bd56e 161 Gene3D G3DSA:3.40.630.30 7 156 1.4E-21 T 11-10-2018 AMK58_21125 9af8908cad64c122857cac51aa7bd56e 161 SUPERFAMILY SSF55729 9 145 2.62E-21 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_21125 9af8908cad64c122857cac51aa7bd56e 161 Pfam PF13508 Acetyltransferase (GNAT) domain 53 139 2.2E-11 T 11-10-2018 IPR000182 GNAT domain AMK58_05685 4f22d549f0e84dcb33e226b2c2bee221 236 Pfam PF02586 SOS response associated peptidase (SRAP) 1 213 8.2E-69 T 11-10-2018 IPR003738 SOS response associated peptidase (SRAP) AMK58_05685 4f22d549f0e84dcb33e226b2c2bee221 236 SUPERFAMILY SSF143081 2 224 3.14E-78 T 11-10-2018 IPR036590 SOS response associated peptidase-like AMK58_05685 4f22d549f0e84dcb33e226b2c2bee221 236 Gene3D G3DSA:3.90.1680.10 1 224 4.4E-74 T 11-10-2018 IPR036590 SOS response associated peptidase-like AMK58_18915 c8bc3d792bc95b4deec44232221f5764 212 Pfam PF04403 Paraquat-inducible protein A 46 199 1.3E-55 T 11-10-2018 IPR007498 Intermembrane transport protein PqiA-like AMK58_00485 a71f3c3aa5aa7e1c8bdd4ef87fb7d2ba 111 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 13 97 1.9E-20 T 11-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 AMK58_00485 a71f3c3aa5aa7e1c8bdd4ef87fb7d2ba 111 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 8 94 20.109 T 11-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 AMK58_00485 a71f3c3aa5aa7e1c8bdd4ef87fb7d2ba 111 SUPERFAMILY SSF101386 10 98 5.01E-26 T 11-10-2018 AMK58_00485 a71f3c3aa5aa7e1c8bdd4ef87fb7d2ba 111 Gene3D G3DSA:1.10.287.1080 7 100 1.8E-31 T 11-10-2018 AMK58_00485 a71f3c3aa5aa7e1c8bdd4ef87fb7d2ba 111 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 11 94 3.2E-33 T 11-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 AMK58_29200 d6bfa6024def2e77a07bef033477e5f4 282 Gene3D G3DSA:3.40.1160.10 37 282 1.1E-57 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMK58_29200 d6bfa6024def2e77a07bef033477e5f4 282 Pfam PF00696 Amino acid kinase family 46 246 1.3E-18 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 AMK58_29200 d6bfa6024def2e77a07bef033477e5f4 282 PIRSF PIRSF039097 6 278 5.5E-98 T 11-10-2018 IPR030669 Molybdenum storage protein subunit alpha/beta GO:0005737|GO:0030151 AMK58_29200 d6bfa6024def2e77a07bef033477e5f4 282 SUPERFAMILY SSF53633 47 276 7.2E-27 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMK58_14070 a1dbcfa7ae576978140a5f363d0e31f8 311 SUPERFAMILY SSF161098 67 296 7.72E-60 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_14070 a1dbcfa7ae576978140a5f363d0e31f8 311 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 98 304 3.2E-20 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_14070 a1dbcfa7ae576978140a5f363d0e31f8 311 Gene3D G3DSA:1.10.3720.10 63 308 2.3E-68 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_16115 479b1fa2a6a4da7d1315517fe089b491 278 PIRSF PIRSF034452 1 277 6.2E-156 T 11-10-2018 IPR009215 TIM-barrel domain, IGPS-like AMK58_16115 479b1fa2a6a4da7d1315517fe089b491 278 SUPERFAMILY SSF51621 3 197 2.61E-84 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMK58_16115 479b1fa2a6a4da7d1315517fe089b491 278 Gene3D G3DSA:3.20.20.70 1 252 2.1E-116 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_16115 479b1fa2a6a4da7d1315517fe089b491 278 Gene3D G3DSA:1.20.5.460 253 277 7.0E-6 T 11-10-2018 AMK58_16115 479b1fa2a6a4da7d1315517fe089b491 278 Pfam PF09370 Phosphoenolpyruvate hydrolase-like 8 274 5.9E-130 T 11-10-2018 IPR009215 TIM-barrel domain, IGPS-like AMK58_17925 2a3ae1d57e2ee5cf34dad31d5d234ebe 170 SUPERFAMILY SSF81342 3 167 1.8E-30 T 11-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 AMK58_17925 2a3ae1d57e2ee5cf34dad31d5d234ebe 170 Pfam PF01292 Prokaryotic cytochrome b561 3 166 2.0E-25 T 11-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 AMK58_05450 363b1b305474a5abf692ec184760efd0 299 Pfam PF02653 Branched-chain amino acid transport system / permease component 10 271 1.2E-32 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_25930 27380e2148b898330e2a7e4e849c0425 270 SUPERFAMILY SSF52540 17 266 1.2E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_25930 27380e2148b898330e2a7e4e849c0425 270 Pfam PF00005 ABC transporter 35 194 2.2E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_25930 27380e2148b898330e2a7e4e849c0425 270 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 244 266 2.9E-7 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AMK58_25930 27380e2148b898330e2a7e4e849c0425 270 SMART SM00382 43 243 2.7E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_25930 27380e2148b898330e2a7e4e849c0425 270 Gene3D G3DSA:3.40.50.300 17 269 3.4E-59 T 11-10-2018 AMK58_12245 eb3298982e9b5de162a1c3d6b583fb58 231 SUPERFAMILY SSF46565 159 219 4.19E-6 T 11-10-2018 IPR036869 Chaperone J-domain superfamily AMK58_06685 b3edcd6c1198d5e6aa1a2a861d3ba315 409 Gene3D G3DSA:1.20.1250.20 208 401 3.9E-18 T 11-10-2018 AMK58_06685 b3edcd6c1198d5e6aa1a2a861d3ba315 409 Gene3D G3DSA:1.20.1250.20 10 192 9.6E-22 T 11-10-2018 AMK58_06685 b3edcd6c1198d5e6aa1a2a861d3ba315 409 SUPERFAMILY SSF103473 11 393 3.01E-52 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_06685 b3edcd6c1198d5e6aa1a2a861d3ba315 409 Pfam PF07690 Major Facilitator Superfamily 20 236 3.7E-23 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMK58_13415 a93267ae5df2634ebe5588492e5a8520 427 Pfam PF00665 Integrase core domain 118 251 8.0E-21 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMK58_13415 a93267ae5df2634ebe5588492e5a8520 427 SUPERFAMILY SSF46689 9 87 7.17E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_13415 a93267ae5df2634ebe5588492e5a8520 427 SUPERFAMILY SSF53098 119 286 4.8E-14 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMK58_13415 a93267ae5df2634ebe5588492e5a8520 427 Pfam PF13551 Winged helix-turn helix 9 57 2.6E-7 T 11-10-2018 AMK58_17615 ffc92a0f4248bb3890f5f4a577ff13d5 271 Pfam PF01578 Cytochrome C assembly protein 69 269 1.6E-15 T 11-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 AMK58_07240 a09a1ebfe85c4d36e71d8b06b6b4254b 505 Pfam PF11862 Domain of unknown function (DUF3382) 17 76 1.9E-12 T 11-10-2018 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal AMK58_07240 a09a1ebfe85c4d36e71d8b06b6b4254b 505 Pfam PF02653 Branched-chain amino acid transport system / permease component 175 459 2.3E-45 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_25940 fbaca3f1a6e4bc240204ebd70255d69c 290 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 275 1.8E-35 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_24435 5258590bedeec78a07502554eca5161d 153 Gene3D G3DSA:3.40.1260.10 33 153 3.7E-28 T 11-10-2018 IPR027396 DsrEFH-like AMK58_24435 5258590bedeec78a07502554eca5161d 153 SUPERFAMILY SSF75169 34 153 7.42E-20 T 11-10-2018 IPR027396 DsrEFH-like AMK58_08330 5d287b32aac5092f4e54b220c9b988e3 147 Pfam PF05443 ROS/MUCR transcriptional regulator protein 14 135 1.6E-49 T 11-10-2018 IPR008807 ROSMUCR transcriptional regulator GO:0003677|GO:0006355|GO:0008270 AMK58_08330 5d287b32aac5092f4e54b220c9b988e3 147 Gene3D G3DSA:1.10.10.1550 62 118 3.4E-30 T 11-10-2018 AMK58_07605 860c03727aec6a7b5d9d391afb044daa 160 Gene3D G3DSA:2.60.120.1140 30 159 1.6E-47 T 11-10-2018 IPR038695 Saro_0823-like superfamily AMK58_07605 860c03727aec6a7b5d9d391afb044daa 160 Pfam PF02643 Uncharacterized ACR, COG1430 50 152 5.7E-34 T 11-10-2018 IPR003795 Protein of unknown function DUF192 AMK58_08115 8f6e960c16342ee6ba2e53ff1d392fc6 187 SUPERFAMILY SSF51182 3 178 4.65E-39 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily AMK58_08115 8f6e960c16342ee6ba2e53ff1d392fc6 187 Hamap MF_01682 Acireductone dioxygenase [mtnD]. 1 172 34.67 T 11-10-2018 IPR023956 Acireductone dioxygenase ARD, bacteria GO:0005506|GO:0010308|GO:0010309|GO:0016151|GO:0019284|GO:0055114 KEGG: 00270+1.13.11.54+1.13.11.53|MetaCyc: PWY-4361|MetaCyc: PWY-5389 AMK58_08115 8f6e960c16342ee6ba2e53ff1d392fc6 187 Gene3D G3DSA:2.60.120.10 2 157 3.6E-46 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_08115 8f6e960c16342ee6ba2e53ff1d392fc6 187 Pfam PF03079 ARD/ARD' family 29 165 1.2E-27 T 11-10-2018 IPR004313 Acireductone dioxygenase ARD family GO:0010309|GO:0055114 KEGG: 00270+1.13.11.54|MetaCyc: PWY-4361|Reactome: R-HSA-1237112 AMK58_22640 405634e762c4c9086192e9e6b3f15481 124 Pfam PF16998 17 kDa outer membrane surface antigen 44 122 2.0E-6 T 11-10-2018 IPR032635 Surface antigen domain AMK58_24265 37384fe10fbeced29a3333626849894e 202 Pfam PF02669 K+-transporting ATPase, c chain 6 196 2.5E-74 T 11-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 AMK58_24265 37384fe10fbeced29a3333626849894e 202 Hamap MF_00276 Potassium-transporting ATPase KdpC subunit [kdpC]. 2 198 36.93 T 11-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 AMK58_24265 37384fe10fbeced29a3333626849894e 202 TIGRFAM TIGR00681 kdpC: K+-transporting ATPase, C subunit 4 197 4.9E-71 T 11-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 AMK58_24265 37384fe10fbeced29a3333626849894e 202 PIRSF PIRSF001296 1 202 2.1E-76 T 11-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 AMK58_22220 82b9e87e903223b5333076ad8bdd60cf 358 Pfam PF13416 Bacterial extracellular solute-binding protein 61 324 7.7E-36 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMK58_22220 82b9e87e903223b5333076ad8bdd60cf 358 SUPERFAMILY SSF53850 40 355 1.94E-60 T 11-10-2018 AMK58_22220 82b9e87e903223b5333076ad8bdd60cf 358 Gene3D G3DSA:3.40.190.10 143 265 7.5E-115 T 11-10-2018 AMK58_22220 82b9e87e903223b5333076ad8bdd60cf 358 Gene3D G3DSA:3.40.190.10 43 355 7.5E-115 T 11-10-2018 AMK58_07080 9a9d57a3bed824ca7e4dd2aa33df2165 191 Pfam PF05194 UreE urease accessory protein, C-terminal domain 79 168 5.1E-20 T 11-10-2018 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0016151|GO:0019627|GO:0065003 AMK58_07080 9a9d57a3bed824ca7e4dd2aa33df2165 191 SUPERFAMILY SSF69737 79 146 2.09E-18 T 11-10-2018 IPR036675 UreE, C-terminal domain superfamily GO:0016151|GO:0019627|GO:0065003 AMK58_07080 9a9d57a3bed824ca7e4dd2aa33df2165 191 Gene3D G3DSA:2.60.260.20 5 78 1.1E-14 T 11-10-2018 AMK58_07080 9a9d57a3bed824ca7e4dd2aa33df2165 191 Gene3D G3DSA:3.30.70.790 79 151 2.2E-26 T 11-10-2018 IPR036675 UreE, C-terminal domain superfamily GO:0016151|GO:0019627|GO:0065003 AMK58_07080 9a9d57a3bed824ca7e4dd2aa33df2165 191 SMART SM00988 7 72 1.1E-14 T 11-10-2018 IPR004029 UreE urease accessory, N-terminal AMK58_07080 9a9d57a3bed824ca7e4dd2aa33df2165 191 Hamap MF_00822 Urease accessory protein UreE [ureE]. 6 147 22.089 T 11-10-2018 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 AMK58_07080 9a9d57a3bed824ca7e4dd2aa33df2165 191 Pfam PF02814 UreE urease accessory protein, N-terminal domain 14 70 9.7E-17 T 11-10-2018 IPR004029 UreE urease accessory, N-terminal AMK58_07080 9a9d57a3bed824ca7e4dd2aa33df2165 191 SUPERFAMILY SSF69287 20 78 5.1E-13 T 11-10-2018 IPR036118 UreE urease accessory, N-terminal domain superfamily AMK58_23875 28aec0365e0e62d22c5b499bd563b32b 229 Gene3D G3DSA:3.40.50.1820 4 227 2.2E-44 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_23875 28aec0365e0e62d22c5b499bd563b32b 229 Pfam PF12697 Alpha/beta hydrolase family 8 220 2.2E-20 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_23875 28aec0365e0e62d22c5b499bd563b32b 229 SUPERFAMILY SSF53474 8 224 1.19E-29 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_20295 ef164a29046eaaa0494f492365db38c5 276 SUPERFAMILY SSF161098 12 270 1.03E-59 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_20295 ef164a29046eaaa0494f492365db38c5 276 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 260 3.7E-16 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_20295 ef164a29046eaaa0494f492365db38c5 276 Gene3D G3DSA:1.10.3720.10 13 273 8.3E-54 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_20640 1188c40a2d7872c61a0bf683ae1b4667 286 Gene3D G3DSA:1.10.3720.10 23 284 1.9E-65 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_20640 1188c40a2d7872c61a0bf683ae1b4667 286 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 14 278 1.3E-93 T 11-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 AMK58_20640 1188c40a2d7872c61a0bf683ae1b4667 286 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 282 9.8E-28 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_20640 1188c40a2d7872c61a0bf683ae1b4667 286 SUPERFAMILY SSF161098 25 276 2.24E-54 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_20640 1188c40a2d7872c61a0bf683ae1b4667 286 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 18 281 2.2E-124 T 11-10-2018 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 AMK58_22110 ddbc9f315b44f9b84215380de6e95974 387 PRINTS PR00344 Bacterial sensor protein C-terminal signature 200 218 7.8E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_22110 ddbc9f315b44f9b84215380de6e95974 387 PRINTS PR00344 Bacterial sensor protein C-terminal signature 183 193 7.8E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_22110 ddbc9f315b44f9b84215380de6e95974 387 PRINTS PR00344 Bacterial sensor protein C-terminal signature 224 237 7.8E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_22110 ddbc9f315b44f9b84215380de6e95974 387 PRINTS PR00344 Bacterial sensor protein C-terminal signature 165 179 7.8E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_22110 ddbc9f315b44f9b84215380de6e95974 387 SUPERFAMILY SSF47384 2 83 1.61E-15 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMK58_22110 ddbc9f315b44f9b84215380de6e95974 387 SMART SM00448 259 373 2.4E-16 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_22110 ddbc9f315b44f9b84215380de6e95974 387 SMART SM00387 129 240 1.6E-29 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_22110 ddbc9f315b44f9b84215380de6e95974 387 Pfam PF00072 Response regulator receiver domain 262 374 2.7E-12 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_22110 ddbc9f315b44f9b84215380de6e95974 387 Gene3D G3DSA:3.40.50.2300 255 385 5.7E-21 T 11-10-2018 AMK58_22110 ddbc9f315b44f9b84215380de6e95974 387 Pfam PF00512 His Kinase A (phospho-acceptor) domain 18 83 5.7E-12 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_22110 ddbc9f315b44f9b84215380de6e95974 387 Gene3D G3DSA:1.10.287.130 1 81 1.4E-16 T 11-10-2018 AMK58_22110 ddbc9f315b44f9b84215380de6e95974 387 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 132 238 6.8E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_22110 ddbc9f315b44f9b84215380de6e95974 387 SMART SM00388 18 83 6.8E-14 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMK58_22110 ddbc9f315b44f9b84215380de6e95974 387 Gene3D G3DSA:3.30.565.10 90 241 1.6E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_22110 ddbc9f315b44f9b84215380de6e95974 387 SUPERFAMILY SSF52172 262 382 2.56E-21 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_22110 ddbc9f315b44f9b84215380de6e95974 387 SUPERFAMILY SSF55874 72 239 6.94E-40 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_17820 4064248aaa6c761ae545bcd9ab89b87e 471 PIRSF PIRSF019381 7 471 3.9E-161 T 11-10-2018 IPR007413 Protein of unknown function DUF463, YcjX-like protein AMK58_17820 4064248aaa6c761ae545bcd9ab89b87e 471 Pfam PF04317 YcjX-like family, DUF463 33 470 1.2E-167 T 11-10-2018 IPR007413 Protein of unknown function DUF463, YcjX-like protein AMK58_23670 917b70e17ad4b23149de963b13a7ef6b 155 SUPERFAMILY SSF52218 5 148 5.32E-25 T 11-10-2018 IPR029039 Flavoprotein-like superfamily AMK58_23670 917b70e17ad4b23149de963b13a7ef6b 155 Gene3D G3DSA:3.40.50.360 3 150 4.6E-17 T 11-10-2018 IPR029039 Flavoprotein-like superfamily AMK58_07000 45d17fccfe2a3b40edbf659efc79ff2b 249 Pfam PF01925 Sulfite exporter TauE/SafE 8 241 3.2E-33 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 AMK58_23705 d3ec120e3a56baf26eede6e926d105a8 294 SUPERFAMILY SSF161098 52 280 7.72E-46 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_23705 d3ec120e3a56baf26eede6e926d105a8 294 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 289 6.8E-16 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_23705 d3ec120e3a56baf26eede6e926d105a8 294 Gene3D G3DSA:1.10.3720.10 46 293 1.3E-49 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_25200 850c1673734f75b5d49c86e1bee6ceee 383 Gene3D G3DSA:3.90.550.10 28 242 1.4E-32 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_25200 850c1673734f75b5d49c86e1bee6ceee 383 Pfam PF00535 Glycosyl transferase family 2 43 162 3.6E-16 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMK58_25200 850c1673734f75b5d49c86e1bee6ceee 383 SUPERFAMILY SSF53448 42 325 9.38E-38 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_23590 11e14d579a8a50f50eeac7863e88ae8f 213 Gene3D G3DSA:3.40.1550.10 2 195 2.0E-49 T 11-10-2018 IPR028976 CheC-like superfamily AMK58_23590 11e14d579a8a50f50eeac7863e88ae8f 213 Pfam PF13690 Chemotaxis phosphatase CheX 67 149 4.9E-8 T 11-10-2018 IPR028051 Chemotaxis phosphatase CheX-like domain AMK58_23590 11e14d579a8a50f50eeac7863e88ae8f 213 SUPERFAMILY SSF103039 4 195 3.58E-44 T 11-10-2018 IPR028976 CheC-like superfamily AMK58_23590 11e14d579a8a50f50eeac7863e88ae8f 213 Pfam PF04509 CheC-like family 8 43 1.7E-6 T 11-10-2018 IPR007597 CheC-like protein GO:0016787 AMK58_11085 b9cb5faf9c216250b6a550b18dbec35f 423 Gene3D G3DSA:3.20.20.140 60 367 7.8E-101 T 11-10-2018 AMK58_11085 b9cb5faf9c216250b6a550b18dbec35f 423 Pfam PF01979 Amidohydrolase family 55 408 6.2E-26 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AMK58_11085 b9cb5faf9c216250b6a550b18dbec35f 423 Gene3D G3DSA:2.30.40.10 9 409 7.8E-101 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMK58_11085 b9cb5faf9c216250b6a550b18dbec35f 423 SUPERFAMILY SSF51338 2 410 1.8E-15 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMK58_11085 b9cb5faf9c216250b6a550b18dbec35f 423 SUPERFAMILY SSF51556 59 371 2.27E-68 T 11-10-2018 IPR032466 Metal-dependent hydrolase AMK58_10380 88c7abb18392758ea57cd2a5e30a6f83 206 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 8 206 32.444 T 11-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_10380 88c7abb18392758ea57cd2a5e30a6f83 206 Gene3D G3DSA:3.40.1370.10 1 206 1.0E-70 T 11-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 AMK58_10380 88c7abb18392758ea57cd2a5e30a6f83 206 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 16 202 2.2E-70 T 11-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_10380 88c7abb18392758ea57cd2a5e30a6f83 206 Pfam PF00573 Ribosomal protein L4/L1 family 16 203 3.1E-62 T 11-10-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 AMK58_10380 88c7abb18392758ea57cd2a5e30a6f83 206 SUPERFAMILY SSF52166 1 205 2.09E-69 T 11-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 AMK58_07440 26810cb0dc6894b593dc21da13bf691d 183 Gene3D G3DSA:3.90.280.10 12 183 2.3E-55 T 11-10-2018 IPR036610 PEBP-like superfamily AMK58_07440 26810cb0dc6894b593dc21da13bf691d 183 Pfam PF01161 Phosphatidylethanolamine-binding protein 48 181 2.6E-36 T 11-10-2018 IPR008914 Phosphatidylethanolamine-binding protein AMK58_07440 26810cb0dc6894b593dc21da13bf691d 183 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 40 179 1.4E-43 T 11-10-2018 IPR005247 YbhB/YbcL AMK58_07440 26810cb0dc6894b593dc21da13bf691d 183 SUPERFAMILY SSF49777 23 182 4.45E-53 T 11-10-2018 IPR036610 PEBP-like superfamily AMK58_28345 525ca1e16604511a43f5285b99017c98 172 Pfam PF13610 DDE domain 112 162 1.0E-19 T 11-10-2018 IPR032874 DDE domain AMK58_06175 62f95718f1788974d2ba28e8c2eadf86 482 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 10 468 9.2E-153 T 11-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 AMK58_06175 62f95718f1788974d2ba28e8c2eadf86 482 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 6 469 18.714 T 11-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 AMK58_06175 62f95718f1788974d2ba28e8c2eadf86 482 Pfam PF00361 Proton-conducting membrane transporter 124 418 1.3E-85 T 11-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_10940 b7f725701cb86e478a540f63bdfb8ad5 149 SUPERFAMILY SSF54637 13 148 4.99E-45 T 11-10-2018 IPR029069 HotDog domain superfamily AMK58_10940 b7f725701cb86e478a540f63bdfb8ad5 149 Gene3D G3DSA:3.10.129.10 7 148 2.7E-46 T 11-10-2018 AMK58_10940 b7f725701cb86e478a540f63bdfb8ad5 149 Pfam PF01575 MaoC like domain 28 127 5.5E-27 T 11-10-2018 IPR002539 MaoC-like dehydratase domain AMK58_22325 50bbe2013e926fa9af504d9b90764406 295 Gene3D G3DSA:3.30.470.80 188 293 1.8E-33 T 11-10-2018 AMK58_22325 50bbe2013e926fa9af504d9b90764406 295 Gene3D G3DSA:3.40.50.20 7 121 3.1E-23 T 11-10-2018 AMK58_22325 50bbe2013e926fa9af504d9b90764406 295 TIGRFAM TIGR00768 rimK_fam: alpha-L-glutamate ligase, RimK family 9 286 2.7E-46 T 11-10-2018 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX GO:0006464 Reactome: R-HSA-70614 AMK58_22325 50bbe2013e926fa9af504d9b90764406 295 Pfam PF08443 RimK-like ATP-grasp domain 106 286 8.7E-21 T 11-10-2018 IPR013651 ATP-grasp fold, RimK-type Reactome: R-HSA-70614 AMK58_22325 50bbe2013e926fa9af504d9b90764406 295 SUPERFAMILY SSF56059 108 292 1.48E-38 T 11-10-2018 AMK58_13615 bbbb46a3f273e11f753fbc2920044968 379 Pfam PF06527 TniQ 1 134 2.5E-19 T 11-10-2018 IPR009492 TniQ AMK58_25645 5557084f17b8f676a599e6fff74e1de3 347 Pfam PF03601 Conserved hypothetical protein 698 18 323 6.7E-65 T 11-10-2018 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 AMK58_22185 6694248e3874982eb1c7fbbc19620d91 478 SUPERFAMILY SSF51338 3 66 1.73E-13 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMK58_22185 6694248e3874982eb1c7fbbc19620d91 478 Gene3D G3DSA:2.30.40.10 4 458 4.8E-178 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMK58_22185 6694248e3874982eb1c7fbbc19620d91 478 SUPERFAMILY SSF51556 54 388 4.68E-104 T 11-10-2018 IPR032466 Metal-dependent hydrolase AMK58_22185 6694248e3874982eb1c7fbbc19620d91 478 Gene3D G3DSA:3.20.20.140 54 429 4.8E-178 T 11-10-2018 AMK58_22185 6694248e3874982eb1c7fbbc19620d91 478 SUPERFAMILY SSF51338 362 459 5.08E-38 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMK58_22185 6694248e3874982eb1c7fbbc19620d91 478 Pfam PF01979 Amidohydrolase family 50 441 4.9E-25 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AMK58_22185 6694248e3874982eb1c7fbbc19620d91 478 TIGRFAM TIGR02033 D-hydantoinase: dihydropyrimidinase 6 459 1.6E-166 T 11-10-2018 IPR011778 Hydantoinase/dihydropyrimidinase GO:0005737 Reactome: R-HSA-399956 AMK58_26280 c3cb55b2ea0f71608f88e8db64b99950 142 SMART SM00344 2 108 2.8E-27 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMK58_26280 c3cb55b2ea0f71608f88e8db64b99950 142 SUPERFAMILY SSF54909 64 141 8.58E-18 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel AMK58_26280 c3cb55b2ea0f71608f88e8db64b99950 142 Gene3D G3DSA:1.10.10.10 1 53 4.2E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_26280 c3cb55b2ea0f71608f88e8db64b99950 142 SUPERFAMILY SSF46785 1 58 2.44E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_26280 c3cb55b2ea0f71608f88e8db64b99950 142 Pfam PF13404 AsnC-type helix-turn-helix domain 2 43 7.9E-15 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMK58_26280 c3cb55b2ea0f71608f88e8db64b99950 142 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 18 29 2.1E-11 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMK58_26280 c3cb55b2ea0f71608f88e8db64b99950 142 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 29 48 2.1E-11 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMK58_26280 c3cb55b2ea0f71608f88e8db64b99950 142 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 2 18 2.1E-11 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMK58_26280 c3cb55b2ea0f71608f88e8db64b99950 142 Pfam PF01037 Lrp/AsnC ligand binding domain 68 137 6.6E-17 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMK58_26280 c3cb55b2ea0f71608f88e8db64b99950 142 Gene3D G3DSA:3.30.70.920 55 142 4.8E-19 T 11-10-2018 AMK58_28305 78046639959b86c68805e68c72eef779 290 SUPERFAMILY SSF52540 27 269 9.42E-10 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_28305 78046639959b86c68805e68c72eef779 290 Pfam PF05621 Bacterial TniB protein 21 265 6.5E-56 T 11-10-2018 IPR008868 Bacterial TniB AMK58_28305 78046639959b86c68805e68c72eef779 290 Gene3D G3DSA:3.40.50.300 23 198 3.7E-5 T 11-10-2018 AMK58_22715 fc644b4be7a4ff316e47dc45ea627697 197 Gene3D G3DSA:3.40.50.150 4 184 8.7E-23 T 11-10-2018 AMK58_22715 fc644b4be7a4ff316e47dc45ea627697 197 SUPERFAMILY SSF53335 20 188 1.29E-22 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_22715 fc644b4be7a4ff316e47dc45ea627697 197 Pfam PF13489 Methyltransferase domain 28 143 2.9E-11 T 11-10-2018 AMK58_09455 76254f07d2a1e3e2a4d84e589fc0d369 191 Pfam PF02622 Uncharacterized ACR, COG1678 20 178 5.1E-46 T 11-10-2018 IPR003774 Protein of unknown function UPF0301 AMK58_09455 76254f07d2a1e3e2a4d84e589fc0d369 191 SUPERFAMILY SSF143456 10 191 1.44E-62 T 11-10-2018 AMK58_09455 76254f07d2a1e3e2a4d84e589fc0d369 191 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 9 191 35.975 T 11-10-2018 IPR003774 Protein of unknown function UPF0301 AMK58_09455 76254f07d2a1e3e2a4d84e589fc0d369 191 Gene3D G3DSA:3.40.1740.10 6 191 1.1E-67 T 11-10-2018 AMK58_21615 22aaf9ca431e448a71142f16a4d0c994 341 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 9 240 5.8E-9 T 11-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase AMK58_21615 22aaf9ca431e448a71142f16a4d0c994 341 Gene3D G3DSA:3.60.10.10 4 331 5.7E-28 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMK58_21615 22aaf9ca431e448a71142f16a4d0c994 341 SUPERFAMILY SSF56219 5 325 8.11E-28 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMK58_13890 22aaf9ca431e448a71142f16a4d0c994 341 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 9 240 5.8E-9 T 11-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase AMK58_13890 22aaf9ca431e448a71142f16a4d0c994 341 Gene3D G3DSA:3.60.10.10 4 331 5.7E-28 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMK58_13890 22aaf9ca431e448a71142f16a4d0c994 341 SUPERFAMILY SSF56219 5 325 8.11E-28 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMK58_07115 19cce8a7954e75d631cf90bb90f0c9e0 274 SUPERFAMILY SSF53187 3 263 1.22E-78 T 11-10-2018 AMK58_07115 19cce8a7954e75d631cf90bb90f0c9e0 274 Pfam PF05013 N-formylglutamate amidohydrolase 12 230 2.1E-65 T 11-10-2018 IPR007709 N-formylglutamate amidohydrolase AMK58_07115 19cce8a7954e75d631cf90bb90f0c9e0 274 TIGRFAM TIGR02017 hutG_amidohyd: N-formylglutamate deformylase 4 261 1.2E-94 T 11-10-2018 IPR010247 N-formylglutamate deformylase AMK58_07115 19cce8a7954e75d631cf90bb90f0c9e0 274 Gene3D G3DSA:3.40.630.40 1 264 1.8E-75 T 11-10-2018 AMK58_22430 b0238941bb3f6df1d6fe534cb84e4eb1 173 Pfam PF11684 Protein of unknown function (DUF2380) 29 165 2.7E-44 T 11-10-2018 IPR021698 Protein of unknown function DUF2380 AMK58_24315 349d163358fb1acb77d6ad1a87286af9 312 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 310 2.0E-41 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_24315 349d163358fb1acb77d6ad1a87286af9 312 SUPERFAMILY SSF161098 90 296 8.37E-23 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_24315 349d163358fb1acb77d6ad1a87286af9 312 Gene3D G3DSA:1.10.3720.10 86 302 4.8E-25 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_00185 caca3e8c56378439c5dd045ef1c5967c 264 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 261 1.2E-58 T 11-10-2018 AMK58_00185 caca3e8c56378439c5dd045ef1c5967c 264 Gene3D G3DSA:3.60.10.10 1 263 8.6E-60 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMK58_00185 caca3e8c56378439c5dd045ef1c5967c 264 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 262 3.5E-56 T 11-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 AMK58_00185 caca3e8c56378439c5dd045ef1c5967c 264 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 255 6.4E-24 T 11-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase AMK58_00185 caca3e8c56378439c5dd045ef1c5967c 264 SUPERFAMILY SSF56219 1 263 1.02E-69 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMK58_00185 caca3e8c56378439c5dd045ef1c5967c 264 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 27 36 - T 11-10-2018 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 AMK58_10415 237fd1596eea1df74dbdc03547de9e93 237 Gene3D G3DSA:3.40.50.880 1 233 3.2E-71 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_10415 237fd1596eea1df74dbdc03547de9e93 237 Pfam PF01965 DJ-1/PfpI family 10 166 8.6E-25 T 11-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 AMK58_10415 237fd1596eea1df74dbdc03547de9e93 237 SUPERFAMILY SSF52317 8 187 4.92E-47 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_01030 7dd541c1a2b8b34a87160c7b7fcb184f 332 Gene3D G3DSA:3.40.190.10 101 269 1.1E-55 T 11-10-2018 AMK58_01030 7dd541c1a2b8b34a87160c7b7fcb184f 332 SUPERFAMILY SSF53850 15 324 1.57E-68 T 11-10-2018 AMK58_01030 7dd541c1a2b8b34a87160c7b7fcb184f 332 Pfam PF12849 PBP superfamily domain 7 295 2.8E-44 T 11-10-2018 IPR024370 PBP domain AMK58_01030 7dd541c1a2b8b34a87160c7b7fcb184f 332 Gene3D G3DSA:3.40.190.10 17 302 1.1E-55 T 11-10-2018 AMK58_02790 93b3df517835d760bc839b9cefc5e9f5 274 Pfam PF10108 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB 28 243 1.2E-59 T 11-10-2018 IPR019288 Predicted 3'-5' exonuclease, PolB-like AMK58_02790 93b3df517835d760bc839b9cefc5e9f5 274 SUPERFAMILY SSF53098 5 207 2.73E-28 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMK58_02790 93b3df517835d760bc839b9cefc5e9f5 274 Gene3D G3DSA:3.30.420.10 6 198 2.9E-20 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMK58_29215 897ee6e6b5b777f8ec415c7c01e9fa81 797 Gene3D G3DSA:3.40.50.2000 184 369 2.9E-21 T 11-10-2018 AMK58_29215 897ee6e6b5b777f8ec415c7c01e9fa81 797 Pfam PF13692 Glycosyl transferases group 1 206 354 1.1E-11 T 11-10-2018 AMK58_29215 897ee6e6b5b777f8ec415c7c01e9fa81 797 SUPERFAMILY SSF53335 607 733 2.53E-5 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_29215 897ee6e6b5b777f8ec415c7c01e9fa81 797 Gene3D G3DSA:3.40.50.2000 103 385 2.9E-21 T 11-10-2018 AMK58_29215 897ee6e6b5b777f8ec415c7c01e9fa81 797 SUPERFAMILY SSF53756 33 387 1.94E-27 T 11-10-2018 AMK58_07300 cac849f9f6a0b2ca1b410eb5c1e49fd7 229 Gene3D G3DSA:3.30.2350.10 1 210 3.0E-62 T 11-10-2018 AMK58_07300 cac849f9f6a0b2ca1b410eb5c1e49fd7 229 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 56 70 - T 11-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMK58_07300 cac849f9f6a0b2ca1b410eb5c1e49fd7 229 SUPERFAMILY SSF55120 3 222 4.96E-60 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMK58_07300 cac849f9f6a0b2ca1b410eb5c1e49fd7 229 Pfam PF00849 RNA pseudouridylate synthase 18 165 7.1E-37 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMK58_14670 b929b0b933efc8a876b8eec2fb2b93a7 867 Pfam PF13779 Domain of unknown function (DUF4175) 39 865 1.5E-275 T 11-10-2018 IPR012683 Conserved hypothetical protein CHP02302, transmembrane AMK58_14670 b929b0b933efc8a876b8eec2fb2b93a7 867 TIGRFAM TIGR02302 aProt_lowcomp: TIGR02302 family protein 31 866 3.1E-175 T 11-10-2018 IPR012683 Conserved hypothetical protein CHP02302, transmembrane AMK58_02655 8c24d5551f589dc46f1ea7fd209bc4f1 155 Gene3D G3DSA:3.40.630.30 1 146 2.3E-43 T 11-10-2018 AMK58_02655 8c24d5551f589dc46f1ea7fd209bc4f1 155 Pfam PF13673 Acetyltransferase (GNAT) domain 44 128 7.9E-16 T 11-10-2018 IPR000182 GNAT domain AMK58_02655 8c24d5551f589dc46f1ea7fd209bc4f1 155 SUPERFAMILY SSF55729 4 143 8.89E-29 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_09230 71b3b82f628ea8fec0d3e273008d0830 317 Gene3D G3DSA:3.40.50.720 1 316 2.9E-72 T 11-10-2018 AMK58_09230 71b3b82f628ea8fec0d3e273008d0830 317 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 223 1.4E-36 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMK58_09230 71b3b82f628ea8fec0d3e273008d0830 317 SUPERFAMILY SSF51735 1 314 1.59E-73 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_24480 003f9faa8bf1eeb927a3d7fc1ec9f6b2 67 Pfam PF11127 Protein of unknown function (DUF2892) 2 56 5.1E-16 T 11-10-2018 IPR021309 Protein of unknown function DUF2892 AMK58_11425 f5baa5ab9590a2f7f8492d45ff7f4fe1 229 Pfam PF03473 MOSC domain 49 164 4.9E-26 T 11-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 AMK58_11425 f5baa5ab9590a2f7f8492d45ff7f4fe1 229 Gene3D G3DSA:2.40.33.20 2 229 7.1E-84 T 11-10-2018 AMK58_11425 f5baa5ab9590a2f7f8492d45ff7f4fe1 229 SUPERFAMILY SSF50800 4 227 4.24E-75 T 11-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily AMK58_11425 f5baa5ab9590a2f7f8492d45ff7f4fe1 229 Pfam PF03475 3-alpha domain 174 217 8.1E-16 T 11-10-2018 IPR005163 3-alpha domain AMK58_25040 16230b19f78eeaa2fc485e46737891a7 528 Pfam PF01019 Gamma-glutamyltranspeptidase 32 523 5.3E-136 T 11-10-2018 AMK58_25040 16230b19f78eeaa2fc485e46737891a7 528 Gene3D G3DSA:3.60.20.40 350 528 9.4E-56 T 11-10-2018 AMK58_25040 16230b19f78eeaa2fc485e46737891a7 528 Gene3D G3DSA:1.10.246.130 245 349 6.1E-18 T 11-10-2018 AMK58_25040 16230b19f78eeaa2fc485e46737891a7 528 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 405 420 5.0E-35 T 11-10-2018 AMK58_25040 16230b19f78eeaa2fc485e46737891a7 528 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 39 64 5.0E-35 T 11-10-2018 AMK58_25040 16230b19f78eeaa2fc485e46737891a7 528 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 129 148 5.0E-35 T 11-10-2018 AMK58_25040 16230b19f78eeaa2fc485e46737891a7 528 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 111 129 5.0E-35 T 11-10-2018 AMK58_25040 16230b19f78eeaa2fc485e46737891a7 528 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 374 392 5.0E-35 T 11-10-2018 AMK58_25040 16230b19f78eeaa2fc485e46737891a7 528 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 258 277 5.0E-35 T 11-10-2018 AMK58_25040 16230b19f78eeaa2fc485e46737891a7 528 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 350 368 5.0E-35 T 11-10-2018 AMK58_25040 16230b19f78eeaa2fc485e46737891a7 528 SUPERFAMILY SSF56235 4 527 1.49E-156 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMK58_07525 5b062525f75a13610800ebd9da83c4f7 238 Pfam PF13478 XdhC Rossmann domain 87 228 3.1E-44 T 11-10-2018 IPR027051 XdhC Rossmann domain AMK58_07525 5b062525f75a13610800ebd9da83c4f7 238 Gene3D G3DSA:3.40.50.720 86 234 3.9E-53 T 11-10-2018 AMK58_15235 f9117eec91498fb2aa6f6e130f9420ef 161 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 7 148 2.7E-17 T 11-10-2018 IPR009936 Protein of unknown function DUF1468 AMK58_25500 9a27940987faa6acb4219e96f9cf3d12 281 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 143 240 2.2E-5 T 11-10-2018 IPR005031 Coenzyme Q-binding protein COQ10, START domain Reactome: R-HSA-611105 AMK58_25500 9a27940987faa6acb4219e96f9cf3d12 281 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 39 123 3.7E-6 T 11-10-2018 IPR019587 Polyketide cyclase/dehydrase AMK58_25500 9a27940987faa6acb4219e96f9cf3d12 281 SUPERFAMILY SSF55961 130 275 1.02E-19 T 11-10-2018 AMK58_25500 9a27940987faa6acb4219e96f9cf3d12 281 Gene3D G3DSA:3.30.530.20 1 125 2.6E-29 T 11-10-2018 IPR023393 START-like domain superfamily AMK58_25500 9a27940987faa6acb4219e96f9cf3d12 281 Gene3D G3DSA:3.30.530.20 128 277 3.4E-40 T 11-10-2018 IPR023393 START-like domain superfamily AMK58_25500 9a27940987faa6acb4219e96f9cf3d12 281 SUPERFAMILY SSF55961 1 124 1.77E-17 T 11-10-2018 AMK58_10265 f07eb80e1f5ac3350ce12b4c06d7e308 290 Pfam PF05013 N-formylglutamate amidohydrolase 48 255 2.2E-47 T 11-10-2018 IPR007709 N-formylglutamate amidohydrolase AMK58_10265 f07eb80e1f5ac3350ce12b4c06d7e308 290 Gene3D G3DSA:3.40.630.40 38 280 3.9E-83 T 11-10-2018 AMK58_10265 f07eb80e1f5ac3350ce12b4c06d7e308 290 SUPERFAMILY SSF53187 31 277 1.51E-76 T 11-10-2018 AMK58_10265 f07eb80e1f5ac3350ce12b4c06d7e308 290 PIRSF PIRSF029730 27 285 6.8E-94 T 11-10-2018 IPR011227 Uncharacterised conserved protein UCP029730 AMK58_17395 25849c5f5b006e08596002e627cc4460 359 Pfam PF01464 Transglycosylase SLT domain 61 165 5.8E-16 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 AMK58_17395 25849c5f5b006e08596002e627cc4460 359 SUPERFAMILY SSF53955 52 184 1.64E-31 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily AMK58_17395 25849c5f5b006e08596002e627cc4460 359 Gene3D G3DSA:1.10.530.10 54 189 3.0E-30 T 11-10-2018 AMK58_20565 7efde09f7e24b5130210cd758cb592d0 375 SUPERFAMILY SSF53756 2 352 1.93E-68 T 11-10-2018 AMK58_20565 7efde09f7e24b5130210cd758cb592d0 375 Pfam PF13439 Glycosyltransferase Family 4 36 163 1.1E-6 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AMK58_20565 7efde09f7e24b5130210cd758cb592d0 375 Gene3D G3DSA:3.40.50.2000 163 337 5.1E-60 T 11-10-2018 AMK58_20565 7efde09f7e24b5130210cd758cb592d0 375 Pfam PF00534 Glycosyl transferases group 1 173 332 2.0E-35 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 AMK58_20565 7efde09f7e24b5130210cd758cb592d0 375 Gene3D G3DSA:3.40.50.2000 14 341 5.1E-60 T 11-10-2018 AMK58_22750 87aa58e6129899f23ebb14d158ef922e 514 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 21 438 1.8E-140 T 11-10-2018 IPR002823 Protein of unknown function DUF112, transmembrane AMK58_29150 88d59cf9ecfd88b6e9daef4882f6e3bd 415 TIGRFAM TIGR03588 PseC: UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase 12 407 2.8E-141 T 11-10-2018 IPR020026 UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase AMK58_29150 88d59cf9ecfd88b6e9daef4882f6e3bd 415 Gene3D G3DSA:3.40.640.10 6 283 4.5E-87 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_29150 88d59cf9ecfd88b6e9daef4882f6e3bd 415 Gene3D G3DSA:3.90.1150.10 284 409 8.9E-33 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_29150 88d59cf9ecfd88b6e9daef4882f6e3bd 415 SUPERFAMILY SSF53383 12 406 6.12E-101 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_29150 88d59cf9ecfd88b6e9daef4882f6e3bd 415 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 21 405 3.8E-109 T 11-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AMK58_29150 88d59cf9ecfd88b6e9daef4882f6e3bd 415 PIRSF PIRSF000390 10 412 1.1E-107 T 11-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AMK58_22630 5da76b9afa82a23ebf6ce442558d63dd 445 Gene3D G3DSA:2.40.30.170 206 423 4.2E-18 T 11-10-2018 AMK58_22630 5da76b9afa82a23ebf6ce442558d63dd 445 Gene3D G3DSA:2.40.50.100 210 343 4.2E-18 T 11-10-2018 AMK58_22630 5da76b9afa82a23ebf6ce442558d63dd 445 SUPERFAMILY SSF111369 205 379 1.57E-7 T 11-10-2018 AMK58_22630 5da76b9afa82a23ebf6ce442558d63dd 445 Gene3D G3DSA:1.10.287.470 244 307 4.2E-18 T 11-10-2018 AMK58_22630 5da76b9afa82a23ebf6ce442558d63dd 445 Pfam PF13437 HlyD family secretion protein 307 410 5.8E-11 T 11-10-2018 AMK58_06940 e078e33f2552210168a8e431643a185e 613 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 135 583 9.5E-214 T 11-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AMK58_06940 e078e33f2552210168a8e431643a185e 613 Pfam PF13667 ThiC-associated domain 24 94 6.3E-24 T 11-10-2018 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AMK58_06940 e078e33f2552210168a8e431643a185e 613 Pfam PF01964 Radical SAM ThiC family 136 581 9.5E-200 T 11-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AMK58_06940 e078e33f2552210168a8e431643a185e 613 Gene3D G3DSA:3.20.20.540 203 516 2.1E-153 T 11-10-2018 IPR038521 ThiC/Bza superfamily KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AMK58_06940 e078e33f2552210168a8e431643a185e 613 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 135 585 99.379 T 11-10-2018 IPR037509 Phosphomethylpyrimidine synthase GO:0009228|GO:0016830 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AMK58_28920 819e6a70f0a4d6742c1361b1b3918dd6 187 TIGRFAM TIGR01221 rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase 3 177 2.3E-62 T 11-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 AMK58_28920 819e6a70f0a4d6742c1361b1b3918dd6 187 SUPERFAMILY SSF51182 1 182 3.11E-71 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily AMK58_28920 819e6a70f0a4d6742c1361b1b3918dd6 187 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 1 178 1.0E-101 T 11-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 AMK58_28920 819e6a70f0a4d6742c1361b1b3918dd6 187 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 6 176 1.7E-66 T 11-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 AMK58_28920 819e6a70f0a4d6742c1361b1b3918dd6 187 Gene3D G3DSA:2.60.120.10 1 185 5.5E-68 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_08100 24f143a35c452e5539acf34dee7cb388 472 Pfam PF03435 Saccharopine dehydrogenase NADP binding domain 15 153 1.1E-33 T 11-10-2018 IPR005097 Saccharopine dehydrogenase, NADP binding domain GO:0016491|GO:0055114 AMK58_08100 24f143a35c452e5539acf34dee7cb388 472 Pfam PF16653 Saccharopine dehydrogenase C-terminal domain 157 439 3.0E-27 T 11-10-2018 IPR032095 Saccharopine dehydrogenase, C-terminal Reactome: R-HSA-71064 AMK58_08100 24f143a35c452e5539acf34dee7cb388 472 Gene3D G3DSA:3.40.50.720 15 423 9.8E-196 T 11-10-2018 AMK58_08100 24f143a35c452e5539acf34dee7cb388 472 Gene3D G3DSA:3.30.360.30 159 468 9.8E-196 T 11-10-2018 IPR023181 Homospermidine synthase-like, C-terminal KEGG: 00960+2.5.1.44 AMK58_07975 ce13e80c2eb157e6b29c089da0ed9114 96 Pfam PF03692 Putative zinc- or iron-chelating domain 9 80 5.3E-9 T 11-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein AMK58_21190 be1a53837979680f0b5c5665dd10f474 325 SUPERFAMILY SSF53850 27 254 1.45E-37 T 11-10-2018 AMK58_21190 be1a53837979680f0b5c5665dd10f474 325 Pfam PF09084 NMT1/THI5 like 39 249 4.7E-45 T 11-10-2018 IPR015168 SsuA/THI5-like AMK58_21190 be1a53837979680f0b5c5665dd10f474 325 Gene3D G3DSA:3.40.190.10 109 210 2.4E-45 T 11-10-2018 AMK58_21190 be1a53837979680f0b5c5665dd10f474 325 Gene3D G3DSA:3.40.190.10 48 298 2.4E-45 T 11-10-2018 AMK58_19715 7920ad39d1e39d4fdd20211d5b7b29aa 327 Gene3D G3DSA:3.40.50.1820 73 293 3.8E-13 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_19715 7920ad39d1e39d4fdd20211d5b7b29aa 327 SUPERFAMILY SSF53474 113 278 1.8E-18 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_01115 d6c90312570853a30804b7fe42517dcd 328 Pfam PF00950 ABC 3 transport family 14 136 7.1E-23 T 11-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 AMK58_01115 d6c90312570853a30804b7fe42517dcd 328 Pfam PF00950 ABC 3 transport family 158 274 1.1E-18 T 11-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 AMK58_01115 d6c90312570853a30804b7fe42517dcd 328 SUPERFAMILY SSF81345 8 274 3.27E-25 T 11-10-2018 IPR037294 ABC transporter, BtuC-like AMK58_21270 1b907513f66df838ee0170eb102ce350 336 Hamap MF_00568 Quinolinate synthase A [nadA]. 37 333 44.528 T 11-10-2018 IPR023066 Quinolinate synthase A, type 2 GO:0016765 MetaCyc: PWY-5316|MetaCyc: PWY-7342 AMK58_21270 1b907513f66df838ee0170eb102ce350 336 Gene3D G3DSA:3.40.50.10800 41 314 2.2E-111 T 11-10-2018 AMK58_21270 1b907513f66df838ee0170eb102ce350 336 Gene3D G3DSA:3.40.50.10800 122 331 2.2E-111 T 11-10-2018 AMK58_21270 1b907513f66df838ee0170eb102ce350 336 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 39 332 6.5E-94 T 11-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 AMK58_21270 1b907513f66df838ee0170eb102ce350 336 Gene3D G3DSA:3.40.50.10800 205 289 2.2E-111 T 11-10-2018 AMK58_21270 1b907513f66df838ee0170eb102ce350 336 SUPERFAMILY SSF142754 39 331 1.27E-107 T 11-10-2018 IPR036094 Quinolinate synthetase A superfamily GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 AMK58_21270 1b907513f66df838ee0170eb102ce350 336 Pfam PF02445 Quinolinate synthetase A protein 42 331 1.0E-109 T 11-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 AMK58_03275 5edcbe7e09225eea351a6986f9fc7d04 79 Pfam PF13773 Domain of unknown function (DUF4170) 4 71 6.1E-35 T 11-10-2018 IPR025226 Protein of unknown function DUF4170 AMK58_03275 5edcbe7e09225eea351a6986f9fc7d04 79 Gene3D G3DSA:3.30.70.2400 1 74 1.0E-32 T 11-10-2018 AMK58_08510 9cc0b9ff72fe55d82fffeda60d82ae8b 337 TIGRFAM TIGR01840 esterase_phb: esterase, PHB depolymerase family 68 253 1.1E-42 T 11-10-2018 IPR010126 Esterase, PHB depolymerase GO:0005576|GO:0016787 AMK58_08510 9cc0b9ff72fe55d82fffeda60d82ae8b 337 SUPERFAMILY SSF53474 61 326 3.85E-38 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_08510 9cc0b9ff72fe55d82fffeda60d82ae8b 337 Gene3D G3DSA:3.40.50.1820 48 330 1.8E-58 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_08510 9cc0b9ff72fe55d82fffeda60d82ae8b 337 Pfam PF10503 Esterase PHB depolymerase 64 262 1.0E-70 T 11-10-2018 IPR010126 Esterase, PHB depolymerase GO:0005576|GO:0016787 AMK58_10695 2fbf43478dbb8c850795bcbcfdbf9ad5 479 Pfam PF03062 MBOAT, membrane-bound O-acyltransferase family 151 354 1.6E-24 T 11-10-2018 IPR004299 Membrane bound O-acyl transferase, MBOAT AMK58_10695 2fbf43478dbb8c850795bcbcfdbf9ad5 479 PIRSF PIRSF500217 1 479 5.1E-134 T 11-10-2018 IPR028362 Alginate O-acetyltransferase AlgI GO:0042121 AMK58_10695 2fbf43478dbb8c850795bcbcfdbf9ad5 479 PIRSF PIRSF016636 1 479 5.5E-132 T 11-10-2018 IPR024194 Alginate O-acetyltransferase AlgI/D-alanyl transfer protein DltB AMK58_28610 1c4e683568e87ed5a8e1780090945931 166 Pfam PF13610 DDE domain 62 162 6.4E-30 T 11-10-2018 IPR032874 DDE domain AMK58_15100 e6714e50343d576a0254817bf7192ec8 397 Pfam PF04143 Sulphur transport 48 376 9.6E-79 T 11-10-2018 IPR007272 Sulphur transport domain AMK58_13835 df5b0cd842d17add50cc16e651a35bb9 60 SUPERFAMILY SSF47598 2 48 1.33E-5 T 11-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 AMK58_00050 df5b0cd842d17add50cc16e651a35bb9 60 SUPERFAMILY SSF47598 2 48 1.33E-5 T 11-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 AMK58_11315 84a7a250dc327d144833c0e0ef02798a 290 Pfam PF00520 Ion transport protein 27 236 4.4E-36 T 11-10-2018 IPR005821 Ion transport domain GO:0005216|GO:0006811|GO:0016020|GO:0055085 AMK58_11315 84a7a250dc327d144833c0e0ef02798a 290 Gene3D G3DSA:1.20.120.350 13 123 2.0E-25 T 11-10-2018 IPR027359 Voltage-dependent channel domain superfamily AMK58_11315 84a7a250dc327d144833c0e0ef02798a 290 Gene3D G3DSA:1.10.287.70 134 230 1.1E-32 T 11-10-2018 AMK58_11315 84a7a250dc327d144833c0e0ef02798a 290 SUPERFAMILY SSF81324 27 231 5.34E-27 T 11-10-2018 AMK58_03330 beeb240abcccd4e741b1d13440dd8054 151 Pfam PF07681 DoxX 23 105 9.4E-20 T 11-10-2018 IPR032808 DoxX family AMK58_12290 47636e833617c8f2b8827bff389befc5 259 Hamap MF_00719 Adenosylcobinamide-GDP ribazoletransferase [cobS]. 1 259 47.579 T 11-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 AMK58_12290 47636e833617c8f2b8827bff389befc5 259 Pfam PF02654 Cobalamin-5-phosphate synthase 20 252 6.7E-50 T 11-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 AMK58_12290 47636e833617c8f2b8827bff389befc5 259 TIGRFAM TIGR00317 cobS: cobalamin 5'-phosphate synthase 20 254 1.6E-35 T 11-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 AMK58_01575 2890fdfdd77d7ee23594941b5ed91f44 337 Gene3D G3DSA:3.30.200.20 1 91 2.7E-25 T 11-10-2018 AMK58_01575 2890fdfdd77d7ee23594941b5ed91f44 337 SUPERFAMILY SSF56112 6 318 3.4E-36 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily AMK58_01575 2890fdfdd77d7ee23594941b5ed91f44 337 Pfam PF01636 Phosphotransferase enzyme family 23 260 2.1E-20 T 11-10-2018 IPR002575 Aminoglycoside phosphotransferase AMK58_01575 2890fdfdd77d7ee23594941b5ed91f44 337 Gene3D G3DSA:3.90.1200.10 92 332 3.5E-58 T 11-10-2018 AMK58_17000 12c174d9897b892eeade96679e1a8ed9 319 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 24 284 3.9E-29 T 11-10-2018 IPR017039 Virulence factor BrkB AMK58_17000 12c174d9897b892eeade96679e1a8ed9 319 PIRSF PIRSF035875 6 303 7.0E-78 T 11-10-2018 IPR017039 Virulence factor BrkB AMK58_17000 12c174d9897b892eeade96679e1a8ed9 319 Pfam PF03631 Virulence factor BrkB 32 287 5.2E-69 T 11-10-2018 IPR017039 Virulence factor BrkB AMK58_14530 6b7514cfed83e963d74c101f77009616 393 Pfam PF02515 CoA-transferase family III 9 369 2.9E-106 T 11-10-2018 IPR003673 CoA-transferase family III GO:0003824 AMK58_14530 6b7514cfed83e963d74c101f77009616 393 SUPERFAMILY SSF89796 3 376 2.62E-113 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily AMK58_14530 6b7514cfed83e963d74c101f77009616 393 Gene3D G3DSA:3.30.1540.10 227 320 7.5E-113 T 11-10-2018 AMK58_14530 6b7514cfed83e963d74c101f77009616 393 Gene3D G3DSA:3.40.50.10540 8 351 7.5E-113 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily AMK58_08705 94d6a4bded3659cae5b969bea8c1aeea 325 SUPERFAMILY SSF53474 24 318 2.61E-35 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_08705 94d6a4bded3659cae5b969bea8c1aeea 325 PIRSF PIRSF031982 2 323 2.5E-90 T 11-10-2018 IPR016986 Uncharacterised conserved protein UCP031982, alpha/beta hydrolase, XabL AMK58_08705 94d6a4bded3659cae5b969bea8c1aeea 325 Pfam PF00326 Prolyl oligopeptidase family 94 170 8.0E-7 T 11-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 AMK58_22190 d27d637e7613958fe306a2c3e3f2e0bf 470 Gene3D G3DSA:3.90.1300.10 2 468 6.8E-136 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMK58_22190 d27d637e7613958fe306a2c3e3f2e0bf 470 ProSitePatterns PS00571 Amidases signature. 155 186 - T 11-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 AMK58_22190 d27d637e7613958fe306a2c3e3f2e0bf 470 Pfam PF01425 Amidase 27 451 1.4E-105 T 11-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMK58_22190 d27d637e7613958fe306a2c3e3f2e0bf 470 SUPERFAMILY SSF75304 6 469 1.57E-130 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMK58_25835 7b820e58cec81514b9dc939cd7507af6 706 Gene3D G3DSA:1.25.40.10 116 437 1.4E-42 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_25835 7b820e58cec81514b9dc939cd7507af6 706 Gene3D G3DSA:1.25.40.10 8 115 8.8E-17 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_25835 7b820e58cec81514b9dc939cd7507af6 706 SUPERFAMILY SSF48452 10 118 3.54E-15 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_25835 7b820e58cec81514b9dc939cd7507af6 706 Pfam PF13432 Tetratricopeptide repeat 324 384 3.8E-5 T 11-10-2018 AMK58_25835 7b820e58cec81514b9dc939cd7507af6 706 Pfam PF13432 Tetratricopeptide repeat 17 72 1.2E-6 T 11-10-2018 AMK58_25835 7b820e58cec81514b9dc939cd7507af6 706 Pfam PF13432 Tetratricopeptide repeat 119 178 3.0E-4 T 11-10-2018 AMK58_25835 7b820e58cec81514b9dc939cd7507af6 706 SMART SM00028 351 384 54.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_25835 7b820e58cec81514b9dc939cd7507af6 706 SMART SM00028 113 146 0.66 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_25835 7b820e58cec81514b9dc939cd7507af6 706 SMART SM00028 4 37 230.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_25835 7b820e58cec81514b9dc939cd7507af6 706 SMART SM00028 385 418 88.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_25835 7b820e58cec81514b9dc939cd7507af6 706 SMART SM00028 72 105 16.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_25835 7b820e58cec81514b9dc939cd7507af6 706 SMART SM00028 249 282 32.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_25835 7b820e58cec81514b9dc939cd7507af6 706 SMART SM00028 38 71 100.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_25835 7b820e58cec81514b9dc939cd7507af6 706 SMART SM00028 181 214 96.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_25835 7b820e58cec81514b9dc939cd7507af6 706 SMART SM00028 317 350 45.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_25835 7b820e58cec81514b9dc939cd7507af6 706 SUPERFAMILY SSF48452 115 418 3.3E-32 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_25835 7b820e58cec81514b9dc939cd7507af6 706 Gene3D G3DSA:3.40.50.11350 567 692 1.4E-5 T 11-10-2018 AMK58_18155 59b9aa755bb80dd8ad116307edce5e4c 265 Gene3D G3DSA:3.30.450.180 113 259 4.9E-13 T 11-10-2018 AMK58_18155 59b9aa755bb80dd8ad116307edce5e4c 265 Gene3D G3DSA:1.10.260.40 31 90 6.3E-7 T 11-10-2018 AMK58_18155 59b9aa755bb80dd8ad116307edce5e4c 265 SUPERFAMILY SSF47413 41 87 4.07E-6 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMK58_18155 59b9aa755bb80dd8ad116307edce5e4c 265 SMART SM00530 14 88 1.9E-6 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMK58_18155 59b9aa755bb80dd8ad116307edce5e4c 265 Pfam PF13560 Helix-turn-helix domain 10 91 7.9E-19 T 11-10-2018 AMK58_11400 8f56dcf3b07a131de78bf473aa1c4ce9 106 Gene3D G3DSA:1.10.790.20 1 106 1.4E-34 T 11-10-2018 AMK58_11400 8f56dcf3b07a131de78bf473aa1c4ce9 106 PIRSF PIRSF031780 1 106 3.7E-31 T 11-10-2018 IPR009945 Protein of unknown function DUF1476 AMK58_11400 8f56dcf3b07a131de78bf473aa1c4ce9 106 Pfam PF07345 Domain of unknown function (DUF1476) 1 101 9.0E-38 T 11-10-2018 IPR009945 Protein of unknown function DUF1476 AMK58_24370 03689d0123ea4bdb6649409c4f715702 202 Pfam PF13560 Helix-turn-helix domain 10 50 3.3E-6 T 11-10-2018 AMK58_24370 03689d0123ea4bdb6649409c4f715702 202 SUPERFAMILY SSF47413 8 57 1.71E-7 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMK58_24370 03689d0123ea4bdb6649409c4f715702 202 Gene3D G3DSA:1.10.260.40 9 66 1.9E-10 T 11-10-2018 AMK58_27255 15d429cb2f9a0f2dcac588d44a214142 335 Pfam PF02608 ABC transporter substrate-binding protein PnrA-like 3 247 2.4E-13 T 11-10-2018 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 AMK58_27255 15d429cb2f9a0f2dcac588d44a214142 335 Gene3D G3DSA:3.40.50.2300 3 261 9.4E-66 T 11-10-2018 AMK58_27255 15d429cb2f9a0f2dcac588d44a214142 335 Gene3D G3DSA:3.40.50.2300 107 326 9.4E-66 T 11-10-2018 AMK58_13495 15667433f620e3119935b0b9188ef936 154 Gene3D G3DSA:3.40.630.30 25 149 2.9E-10 T 11-10-2018 AMK58_13495 15667433f620e3119935b0b9188ef936 154 SUPERFAMILY SSF55729 54 138 1.9E-11 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_04795 a5022a5734ce3bba546dff85697920dd 320 Pfam PF02353 Mycolic acid cyclopropane synthetase 97 207 2.7E-6 T 11-10-2018 AMK58_04795 a5022a5734ce3bba546dff85697920dd 320 Gene3D G3DSA:3.40.50.150 73 317 1.2E-24 T 11-10-2018 AMK58_04795 a5022a5734ce3bba546dff85697920dd 320 SUPERFAMILY SSF53335 83 318 1.69E-21 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_26415 df901d166de5493bad6db61a90e11eda 225 TIGRFAM TIGR03717 R_switched_YjbE: integral membrane protein, YjbE family 13 212 4.5E-63 T 11-10-2018 IPR022301 Integral membrane protein YjbE AMK58_26415 df901d166de5493bad6db61a90e11eda 225 Pfam PF03741 Integral membrane protein TerC family 15 212 6.6E-42 T 11-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 AMK58_05355 e01a3ea0e57d73681dd47547cb7ecadc 312 Gene3D G3DSA:1.20.1510.10 4 222 2.0E-11 T 11-10-2018 IPR027469 Cation efflux transmembrane domain superfamily AMK58_05355 e01a3ea0e57d73681dd47547cb7ecadc 312 SUPERFAMILY SSF161111 3 219 1.27E-25 T 11-10-2018 IPR027469 Cation efflux transmembrane domain superfamily AMK58_05355 e01a3ea0e57d73681dd47547cb7ecadc 312 Pfam PF01545 Cation efflux family 8 220 2.1E-31 T 11-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AMK58_04765 3e77449524415f69f21b3098738a3c86 216 SUPERFAMILY SSF48498 89 208 9.92E-22 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMK58_04765 3e77449524415f69f21b3098738a3c86 216 SUPERFAMILY SSF46689 9 88 6.98E-22 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_04765 3e77449524415f69f21b3098738a3c86 216 Pfam PF16859 Bacterial transcriptional repressor C-terminal 95 180 7.2E-12 T 11-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMK58_04765 3e77449524415f69f21b3098738a3c86 216 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 22 35 1.5E-12 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_04765 3e77449524415f69f21b3098738a3c86 216 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 43 66 1.5E-12 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_04765 3e77449524415f69f21b3098738a3c86 216 Gene3D G3DSA:1.10.357.10 10 209 4.2E-47 T 11-10-2018 AMK58_04765 3e77449524415f69f21b3098738a3c86 216 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 68 1.2E-19 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_10590 c0e78477db9295fd4b0cfcbc752b134e 534 SUPERFAMILY SSF48371 129 227 4.6E-5 T 11-10-2018 IPR016024 Armadillo-type fold AMK58_10590 c0e78477db9295fd4b0cfcbc752b134e 534 TIGRFAM TIGR03409 urea_trans_UrtB: urea ABC transporter, permease protein UrtB 240 530 3.4E-128 T 11-10-2018 IPR017779 ABC transporter, urea permease protein UrtB, bacterial-type AMK58_10590 c0e78477db9295fd4b0cfcbc752b134e 534 Pfam PF02653 Branched-chain amino acid transport system / permease component 244 516 4.9E-53 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_04955 4131637da552895e19875806e670dc98 118 Gene3D G3DSA:2.40.128.290 41 118 2.4E-39 T 11-10-2018 IPR038646 Atu4866-like superfamily AMK58_04955 4131637da552895e19875806e670dc98 118 Pfam PF11512 Agrobacterium tumefaciens protein Atu4866 42 116 1.3E-41 T 11-10-2018 IPR020955 Uncharacterised protein family Atu4866 AMK58_26360 9bc45082f0815b751b692e268fed806d 175 SUPERFAMILY SSF140566 48 89 1.31E-5 T 11-10-2018 IPR036679 FlgN-like superfamily GO:0005515|GO:0044780 AMK58_09265 26fe9e9f9f618ec029baa5f97b6638bd 240 Pfam PF01618 MotA/TolQ/ExbB proton channel family 89 220 3.9E-40 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel AMK58_09265 26fe9e9f9f618ec029baa5f97b6638bd 240 TIGRFAM TIGR02796 tolQ: protein TolQ 20 232 4.3E-84 T 11-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 AMK58_09265 26fe9e9f9f618ec029baa5f97b6638bd 240 Hamap MF_02202 Tol-Pal system protein TolQ [tolQ]. 18 237 38.589 T 11-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 AMK58_14095 7e6ae7779bc1bbdb0107cee836ac0126 383 Pfam PF01547 Bacterial extracellular solute-binding protein 55 167 4.7E-5 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMK58_14095 7e6ae7779bc1bbdb0107cee836ac0126 383 SUPERFAMILY SSF53850 7 372 1.78E-27 T 11-10-2018 AMK58_14095 7e6ae7779bc1bbdb0107cee836ac0126 383 Gene3D G3DSA:3.40.190.10 54 330 4.9E-22 T 11-10-2018 AMK58_14095 7e6ae7779bc1bbdb0107cee836ac0126 383 Gene3D G3DSA:3.40.190.10 116 369 4.9E-22 T 11-10-2018 AMK58_24045 7f939fc68ae84162bd4e9c05f7383bce 920 SUPERFAMILY SSF48208 438 891 8.16E-49 T 11-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 AMK58_24045 7f939fc68ae84162bd4e9c05f7383bce 920 Pfam PF03200 Glycosyl hydrolase family 63 C-terminal domain 716 800 2.3E-5 T 11-10-2018 IPR031335 Glycosyl hydrolase family 63, C-terminal KEGG: 00510+3.2.1.106|MetaCyc: PWY-7918|MetaCyc: PWY-7919|Reactome: R-HSA-4793954|Reactome: R-HSA-532668 AMK58_12775 685dbdefc75869ac10b23827e1271651 175 Pfam PF06676 Protein of unknown function (DUF1178) 1 171 3.7E-55 T 11-10-2018 IPR009562 Protein of unknown function DUF1178 AMK58_12775 685dbdefc75869ac10b23827e1271651 175 PIRSF PIRSF032131 1 175 1.6E-43 T 11-10-2018 IPR009562 Protein of unknown function DUF1178 AMK58_04830 d104b37dcfb34fb16476c542f04264e5 225 Gene3D G3DSA:2.40.160.170 17 225 1.7E-47 T 11-10-2018 AMK58_04830 d104b37dcfb34fb16476c542f04264e5 225 SUPERFAMILY SSF56925 35 176 1.96E-7 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel AMK58_01935 f33c2ba26f6a53f7cd4229ffe17c4df2 332 Pfam PF12224 Putative amidoligase enzyme 18 291 5.0E-56 T 11-10-2018 IPR022025 Putative amidoligase enzyme AMK58_28645 c1b1c45d3ee46bb957fa21ee60c61230 237 Pfam PF13610 DDE domain 77 204 6.5E-36 T 11-10-2018 IPR032874 DDE domain AMK58_28645 c1b1c45d3ee46bb957fa21ee60c61230 237 SUPERFAMILY SSF53098 70 203 2.58E-5 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMK58_07585 d12d834a6652e02dc29e7806aea68a8d 252 Gene3D G3DSA:3.40.50.410 30 202 6.8E-13 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMK58_07585 d12d834a6652e02dc29e7806aea68a8d 252 Pfam PF06707 Protein of unknown function (DUF1194) 30 236 1.9E-76 T 11-10-2018 IPR010607 Protein of unknown function DUF1194 AMK58_07585 d12d834a6652e02dc29e7806aea68a8d 252 SUPERFAMILY SSF53300 29 233 1.27E-17 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMK58_15500 e7ab140769a73dc3b427b00d88053b0b 147 Gene3D G3DSA:3.40.50.12740 9 146 4.6E-38 T 11-10-2018 AMK58_15500 e7ab140769a73dc3b427b00d88053b0b 147 SMART SM00448 10 126 1.1E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_15500 e7ab140769a73dc3b427b00d88053b0b 147 SUPERFAMILY SSF52172 9 138 1.99E-35 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_15500 e7ab140769a73dc3b427b00d88053b0b 147 Pfam PF00072 Response regulator receiver domain 13 126 3.0E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_18135 d2430579aa063e6ee4ed887cdfb27937 336 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 333 1.4E-47 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_18135 d2430579aa063e6ee4ed887cdfb27937 336 SUPERFAMILY SSF161098 92 319 1.52E-16 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_29010 bb616cd5e9d9301fa58ca6f76bcbd8bf 691 SUPERFAMILY SSF52540 32 252 7.73E-16 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_09010 a807903a39a9a1f248ffe91f4504ed10 279 Gene3D G3DSA:3.40.50.150 11 263 3.0E-39 T 11-10-2018 AMK58_09010 a807903a39a9a1f248ffe91f4504ed10 279 SUPERFAMILY SSF53335 17 239 5.37E-38 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_09010 a807903a39a9a1f248ffe91f4504ed10 279 Pfam PF13649 Methyltransferase domain 55 152 5.1E-18 T 11-10-2018 AMK58_07695 da712d7fe93f59e9fe419c22750a06fa 334 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 33 51 - T 11-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 AMK58_07695 da712d7fe93f59e9fe419c22750a06fa 334 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 10 306 7.1E-71 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AMK58_07695 da712d7fe93f59e9fe419c22750a06fa 334 Gene3D G3DSA:3.40.50.1100 10 312 1.7E-117 T 11-10-2018 AMK58_07695 da712d7fe93f59e9fe419c22750a06fa 334 Gene3D G3DSA:3.40.50.1100 38 151 1.7E-117 T 11-10-2018 AMK58_07695 da712d7fe93f59e9fe419c22750a06fa 334 SUPERFAMILY SSF53686 6 327 4.06E-96 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMK58_16090 6a07e6d88b6ea174e9003249c14b8df4 311 Pfam PF09557 Domain of unknown function (DUF2382) 179 288 9.8E-24 T 11-10-2018 IPR019060 Domain of unknown function DUF2382 AMK58_21400 52ee61c60b890ca3bcf3e6bb6e926cca 466 SUPERFAMILY SSF53850 39 301 2.79E-21 T 11-10-2018 AMK58_21400 52ee61c60b890ca3bcf3e6bb6e926cca 466 Pfam PF13379 NMT1-like family 38 314 1.9E-103 T 11-10-2018 AMK58_21400 52ee61c60b890ca3bcf3e6bb6e926cca 466 Gene3D G3DSA:3.40.190.10 42 436 4.5E-140 T 11-10-2018 AMK58_21400 52ee61c60b890ca3bcf3e6bb6e926cca 466 Gene3D G3DSA:3.40.190.10 127 441 4.5E-140 T 11-10-2018 AMK58_20260 cab9a78eeb6861c462cdec46b75810dc 308 SUPERFAMILY SSF103481 193 289 2.09E-10 T 11-10-2018 AMK58_20260 cab9a78eeb6861c462cdec46b75810dc 308 SUPERFAMILY SSF103481 50 150 7.59E-16 T 11-10-2018 AMK58_20260 cab9a78eeb6861c462cdec46b75810dc 308 Pfam PF00892 EamA-like transporter family 16 148 8.7E-17 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_20260 cab9a78eeb6861c462cdec46b75810dc 308 Pfam PF00892 EamA-like transporter family 160 284 3.3E-6 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_04220 1d0e27d799fe5e2f7e3bf69a25081b5d 149 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 110 123 3.6E-13 T 11-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 AMK58_04220 1d0e27d799fe5e2f7e3bf69a25081b5d 149 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 95 109 3.6E-13 T 11-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 AMK58_04220 1d0e27d799fe5e2f7e3bf69a25081b5d 149 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 78 91 3.6E-13 T 11-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 AMK58_04220 1d0e27d799fe5e2f7e3bf69a25081b5d 149 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 105 122 - T 11-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMK58_04220 1d0e27d799fe5e2f7e3bf69a25081b5d 149 Pfam PF00364 Biotin-requiring enzyme 76 148 1.4E-20 T 11-10-2018 IPR000089 Biotin/lipoyl attachment AMK58_04220 1d0e27d799fe5e2f7e3bf69a25081b5d 149 Gene3D G3DSA:2.40.50.100 72 149 2.2E-27 T 11-10-2018 AMK58_04220 1d0e27d799fe5e2f7e3bf69a25081b5d 149 SUPERFAMILY SSF51230 74 149 9.55E-23 T 11-10-2018 IPR011053 Single hybrid motif AMK58_04220 1d0e27d799fe5e2f7e3bf69a25081b5d 149 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 11 149 1.8E-37 T 11-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 AMK58_02210 5aca03e35755ec25c1ee7b6f40561914 118 SUPERFAMILY SSF51182 12 115 8.15E-18 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily AMK58_02210 5aca03e35755ec25c1ee7b6f40561914 118 Gene3D G3DSA:2.60.120.10 18 116 3.1E-26 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_02210 5aca03e35755ec25c1ee7b6f40561914 118 Pfam PF05899 Protein of unknown function (DUF861) 41 113 5.9E-20 T 11-10-2018 IPR008579 Domain of unknown function DUF861, cupin-3 KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 AMK58_28075 d76e8428837aaf60c2905f4ca421d2c3 159 Pfam PF12680 SnoaL-like domain 49 137 6.6E-10 T 11-10-2018 IPR037401 SnoaL-like domain AMK58_28075 d76e8428837aaf60c2905f4ca421d2c3 159 Gene3D G3DSA:3.10.450.50 18 150 1.9E-25 T 11-10-2018 AMK58_28075 d76e8428837aaf60c2905f4ca421d2c3 159 SUPERFAMILY SSF54427 28 152 1.96E-25 T 11-10-2018 IPR032710 NTF2-like domain superfamily AMK58_24095 17c2ea661e6427e06ab1e189c14353b4 270 SUPERFAMILY SSF81301 19 76 1.27E-9 T 11-10-2018 AMK58_24095 17c2ea661e6427e06ab1e189c14353b4 270 Pfam PF13427 Domain of unknown function (DUF4111) 156 258 2.9E-33 T 11-10-2018 IPR025184 Domain of unknown function DUF4111 AMK58_24095 17c2ea661e6427e06ab1e189c14353b4 270 Gene3D G3DSA:3.30.460.10 12 81 9.7E-8 T 11-10-2018 AMK58_24095 17c2ea661e6427e06ab1e189c14353b4 270 Pfam PF01909 Nucleotidyltransferase domain 32 71 1.5E-5 T 11-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 AMK58_24095 17c2ea661e6427e06ab1e189c14353b4 270 PIRSF PIRSF000819 16 266 4.8E-64 T 11-10-2018 IPR024172 Streptomycin 3''-adenylyltransferase GO:0009012|GO:0046677 AMK58_15115 eb31bea10a181a180334d26b24fe42b1 287 SUPERFAMILY SSF53474 5 284 7.97E-92 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_15115 eb31bea10a181a180334d26b24fe42b1 287 Gene3D G3DSA:3.40.50.1820 6 286 3.3E-93 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_15115 eb31bea10a181a180334d26b24fe42b1 287 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 8 284 1.4E-123 T 11-10-2018 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801|Reactome: R-HSA-156590 AMK58_15115 eb31bea10a181a180334d26b24fe42b1 287 Pfam PF00756 Putative esterase 25 278 1.0E-58 T 11-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 AMK58_24750 4ae55bb97577ceda93b2aacb1b67671a 203 Gene3D G3DSA:2.40.128.200 124 201 1.9E-10 T 11-10-2018 IPR036328 C-type lysozyme inhibitor superfamily AMK58_24750 4ae55bb97577ceda93b2aacb1b67671a 203 SUPERFAMILY SSF141488 122 199 3.66E-14 T 11-10-2018 IPR036328 C-type lysozyme inhibitor superfamily AMK58_24750 4ae55bb97577ceda93b2aacb1b67671a 203 Pfam PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme 128 196 1.0E-13 T 11-10-2018 IPR018660 C-type lysozyme inhibitor AMK58_24750 4ae55bb97577ceda93b2aacb1b67671a 203 Pfam PF07007 Lysozyme inhibitor LprI 41 113 1.2E-7 T 11-10-2018 IPR009739 Lysozyme inhibitor LprI, N-terminal AMK58_13265 8f555da4d7b08cddded28e2d60ecc4c1 280 SUPERFAMILY SSF52518 22 215 1.92E-70 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMK58_13265 8f555da4d7b08cddded28e2d60ecc4c1 280 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 58 206 7.4E-32 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMK58_13265 8f555da4d7b08cddded28e2d60ecc4c1 280 Gene3D G3DSA:3.40.50.970 87 225 5.8E-27 T 11-10-2018 AMK58_13265 8f555da4d7b08cddded28e2d60ecc4c1 280 TIGRFAM TIGR02177 PorB_KorB: 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family 24 214 6.7E-79 T 11-10-2018 IPR011896 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate AMK58_13745 c4946f5b57258f43c69acad5b6285436 121 Pfam PF00072 Response regulator receiver domain 5 116 1.0E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_13745 c4946f5b57258f43c69acad5b6285436 121 Gene3D G3DSA:3.40.50.12740 2 120 2.5E-37 T 11-10-2018 AMK58_13745 c4946f5b57258f43c69acad5b6285436 121 SMART SM00448 3 116 8.8E-39 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_13745 c4946f5b57258f43c69acad5b6285436 121 SUPERFAMILY SSF52172 3 120 6.12E-37 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_00710 4b4f05572abcb2d34fdaffb8d3fcaca7 176 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 42 151 3.6E-38 T 11-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 AMK58_00710 4b4f05572abcb2d34fdaffb8d3fcaca7 176 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 121 131 - T 11-10-2018 IPR020549 Endoribonuclease YbeY, conserved site AMK58_00710 4b4f05572abcb2d34fdaffb8d3fcaca7 176 Pfam PF02130 Uncharacterized protein family UPF0054 23 150 1.1E-38 T 11-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 AMK58_00710 4b4f05572abcb2d34fdaffb8d3fcaca7 176 Gene3D G3DSA:3.40.390.30 2 161 7.7E-49 T 11-10-2018 IPR023091 Metalloprotease catalytic domain superfamily, predicted GO:0004222 AMK58_00710 4b4f05572abcb2d34fdaffb8d3fcaca7 176 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 2 155 24.254 T 11-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 AMK58_00710 4b4f05572abcb2d34fdaffb8d3fcaca7 176 SUPERFAMILY SSF55486 29 157 4.21E-45 T 11-10-2018 AMK58_17935 ee3662774159b77ef74430c9d62a1403 339 Gene3D G3DSA:3.30.2010.10 84 172 4.5E-22 T 11-10-2018 AMK58_17935 ee3662774159b77ef74430c9d62a1403 339 Pfam PF01435 Peptidase family M48 97 294 7.8E-29 T 11-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AMK58_07150 2edebba85f97edd0727c6b3e3f371fcd 155 Gene3D G3DSA:1.10.260.40 23 90 5.9E-18 T 11-10-2018 AMK58_07150 2edebba85f97edd0727c6b3e3f371fcd 155 SUPERFAMILY SSF47413 20 93 9.21E-28 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMK58_07150 2edebba85f97edd0727c6b3e3f371fcd 155 SMART SM00530 31 86 2.0E-14 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMK58_07150 2edebba85f97edd0727c6b3e3f371fcd 155 Pfam PF01381 Helix-turn-helix 32 86 5.2E-14 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMK58_07515 f5595bbf139d85cc2eb6a454924dc393 237 SUPERFAMILY SSF52317 1 194 1.38E-43 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_07515 f5595bbf139d85cc2eb6a454924dc393 237 Gene3D G3DSA:3.40.50.880 1 236 4.7E-57 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_07515 f5595bbf139d85cc2eb6a454924dc393 237 Pfam PF00117 Glutamine amidotransferase class-I 20 180 2.0E-20 T 11-10-2018 IPR017926 Glutamine amidotransferase AMK58_05510 6e4a68d33ebba71aa5a48d0686f36214 587 SUPERFAMILY SSF52518 2 186 1.15E-64 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMK58_05510 6e4a68d33ebba71aa5a48d0686f36214 587 SUPERFAMILY SSF52467 189 364 7.12E-64 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AMK58_05510 6e4a68d33ebba71aa5a48d0686f36214 587 Gene3D G3DSA:3.40.50.1220 190 362 7.3E-60 T 11-10-2018 AMK58_05510 6e4a68d33ebba71aa5a48d0686f36214 587 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 7 170 8.5E-58 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AMK58_05510 6e4a68d33ebba71aa5a48d0686f36214 587 Gene3D G3DSA:3.40.50.970 366 575 3.4E-68 T 11-10-2018 AMK58_05510 6e4a68d33ebba71aa5a48d0686f36214 587 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 398 546 3.6E-48 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMK58_05510 6e4a68d33ebba71aa5a48d0686f36214 587 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 6 568 2.6E-240 T 11-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 AMK58_05510 6e4a68d33ebba71aa5a48d0686f36214 587 SUPERFAMILY SSF52518 374 572 2.86E-68 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMK58_05510 6e4a68d33ebba71aa5a48d0686f36214 587 Gene3D G3DSA:3.40.50.970 1 182 1.8E-70 T 11-10-2018 AMK58_05510 6e4a68d33ebba71aa5a48d0686f36214 587 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 196 332 2.5E-43 T 11-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AMK58_09100 0f087c1cf90d2d27d118d0737100dfa7 151 Pfam PF16998 17 kDa outer membrane surface antigen 68 149 4.4E-12 T 11-10-2018 IPR032635 Surface antigen domain AMK58_23760 039275a90439ce6b5667a8baa5d8772d 216 Pfam PF05128 Domain of unknown function (DUF697) 57 202 2.7E-11 T 11-10-2018 IPR021147 Protein of unknown function DUF697 AMK58_27350 8968e779a34d238224b9d43b8957ac75 203 Pfam PF01386 Ribosomal L25p family 7 94 2.9E-26 T 11-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 AMK58_27350 8968e779a34d238224b9d43b8957ac75 203 Gene3D G3DSA:2.40.240.10 3 97 1.2E-29 T 11-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AMK58_27350 8968e779a34d238224b9d43b8957ac75 203 Gene3D G3DSA:2.170.120.20 99 188 5.8E-22 T 11-10-2018 IPR037121 Ribosomal protein L25, C-terminal AMK58_27350 8968e779a34d238224b9d43b8957ac75 203 SUPERFAMILY SSF50715 5 194 4.71E-56 T 11-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AMK58_27350 8968e779a34d238224b9d43b8957ac75 203 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 7 185 6.9E-41 T 11-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 AMK58_27350 8968e779a34d238224b9d43b8957ac75 203 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 104 187 3.0E-26 T 11-10-2018 IPR020057 Ribosomal protein L25, beta domain AMK58_27350 8968e779a34d238224b9d43b8957ac75 203 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 7 97 7.0E-24 T 11-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 AMK58_27350 8968e779a34d238224b9d43b8957ac75 203 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 5 186 28.82 T 11-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 AMK58_08360 8470fcba67b4dfe4e1a611e399eaa08c 154 PIRSF PIRSF024492 3 152 1.0E-27 T 11-10-2018 IPR014519 Uncharacterised conserved protein UCP024492 AMK58_08360 8470fcba67b4dfe4e1a611e399eaa08c 154 Pfam PF04343 Protein of unknown function, DUF488 18 134 9.5E-26 T 11-10-2018 IPR007438 Protein of unknown function DUF488 AMK58_11930 51cbbc282c563a6c8d6958112468a151 369 Gene3D G3DSA:1.10.3720.10 125 357 4.4E-17 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_11930 51cbbc282c563a6c8d6958112468a151 369 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 155 362 1.7E-36 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_11930 51cbbc282c563a6c8d6958112468a151 369 SUPERFAMILY SSF161098 133 348 7.68E-11 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_17745 7a25df6ec7b0d83965464489c46a725a 269 Gene3D G3DSA:1.20.1270.180 23 130 2.3E-6 T 11-10-2018 AMK58_17745 7a25df6ec7b0d83965464489c46a725a 269 Pfam PF07007 Lysozyme inhibitor LprI 40 119 3.5E-8 T 11-10-2018 IPR009739 Lysozyme inhibitor LprI, N-terminal AMK58_16285 c31fb2c3deac1a696320e6770b3d1a4e 340 Gene3D G3DSA:3.40.190.10 33 161 4.5E-14 T 11-10-2018 AMK58_16285 c31fb2c3deac1a696320e6770b3d1a4e 340 Pfam PF13379 NMT1-like family 31 273 5.6E-29 T 11-10-2018 AMK58_16285 c31fb2c3deac1a696320e6770b3d1a4e 340 Gene3D G3DSA:3.40.190.10 172 334 1.2E-17 T 11-10-2018 AMK58_16285 c31fb2c3deac1a696320e6770b3d1a4e 340 SUPERFAMILY SSF53850 34 271 1.78E-29 T 11-10-2018 AMK58_06265 786c06a1bdc76bf67de294679283585a 251 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 17 247 7.0E-100 T 11-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 AMK58_06265 786c06a1bdc76bf67de294679283585a 251 PIRSF PIRSF005650 12 251 1.6E-94 T 11-10-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 AMK58_06265 786c06a1bdc76bf67de294679283585a 251 Pfam PF00696 Amino acid kinase family 17 226 5.8E-27 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 AMK58_06265 786c06a1bdc76bf67de294679283585a 251 Gene3D G3DSA:3.40.1160.10 13 251 3.0E-77 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMK58_06265 786c06a1bdc76bf67de294679283585a 251 SUPERFAMILY SSF53633 15 246 4.84E-71 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMK58_06265 786c06a1bdc76bf67de294679283585a 251 Hamap MF_01220_B Uridylate kinase [pyrH]. 14 247 44.398 T 11-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 AMK58_15560 41b80bc6c6e498e9a5899b5bc911e0f6 109 SUPERFAMILY SSF54427 5 100 3.51E-12 T 11-10-2018 IPR032710 NTF2-like domain superfamily AMK58_15560 41b80bc6c6e498e9a5899b5bc911e0f6 109 Gene3D G3DSA:3.10.450.50 1 107 2.8E-27 T 11-10-2018 AMK58_13180 253a438ec88204015685b7f33d930b16 406 Pfam PF06850 PHB de-polymerase C-terminus 204 405 1.9E-92 T 11-10-2018 IPR009656 PHB de-polymerase, C-terminal AMK58_13180 253a438ec88204015685b7f33d930b16 406 PIRSF PIRSF020818 1 406 9.9E-191 T 11-10-2018 IPR010915 Polyhydroxyalkanoate depolymerase AMK58_13180 253a438ec88204015685b7f33d930b16 406 TIGRFAM TIGR01849 PHB_depoly_PhaZ: polyhydroxyalkanoate depolymerase, intracellular 2 405 1.1E-180 T 11-10-2018 IPR010915 Polyhydroxyalkanoate depolymerase AMK58_13180 253a438ec88204015685b7f33d930b16 406 SUPERFAMILY SSF53474 91 403 6.58E-32 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_26565 73c05a4b198431bef0f571f602b922eb 221 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 2 210 8.9E-41 T 11-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 AMK58_26565 73c05a4b198431bef0f571f602b922eb 221 Pfam PF01914 MarC family integral membrane protein 3 213 2.6E-42 T 11-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 AMK58_12035 b7c20debf162ac04e8461e09805dde90 140 Pfam PF13430 Domain of unknown function (DUF4112) 31 133 1.4E-30 T 11-10-2018 IPR025187 Protein of unknown function DUF4112 AMK58_03425 218046683af115438e08d1ad0a14c0f5 288 SUPERFAMILY SSF75217 133 284 1.52E-32 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases AMK58_03425 218046683af115438e08d1ad0a14c0f5 288 SUPERFAMILY SSF55315 43 117 1.18E-8 T 11-10-2018 IPR029064 50S ribosomal protein L30e-like AMK58_03425 218046683af115438e08d1ad0a14c0f5 288 SMART SM00967 46 121 2.6E-9 T 11-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 AMK58_03425 218046683af115438e08d1ad0a14c0f5 288 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 47 118 1.3E-8 T 11-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 AMK58_03425 218046683af115438e08d1ad0a14c0f5 288 Gene3D G3DSA:3.40.1280.10 125 287 7.0E-36 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMK58_03425 218046683af115438e08d1ad0a14c0f5 288 Pfam PF00588 SpoU rRNA Methylase family 139 281 2.4E-30 T 11-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AMK58_10615 827d1af2f4a23ccd842af6da118cbb53 443 Gene3D G3DSA:3.20.20.120 166 385 1.5E-21 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMK58_10615 827d1af2f4a23ccd842af6da118cbb53 443 SUPERFAMILY SSF51604 174 344 4.52E-12 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMK58_26320 4073203b49f2ffd80c28d455190e805e 254 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 251 1.9E-58 T 11-10-2018 AMK58_26320 4073203b49f2ffd80c28d455190e805e 254 Gene3D G3DSA:3.40.50.720 1 253 5.3E-81 T 11-10-2018 AMK58_26320 4073203b49f2ffd80c28d455190e805e 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 4.7E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_26320 4073203b49f2ffd80c28d455190e805e 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 4.7E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_26320 4073203b49f2ffd80c28d455190e805e 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 4.7E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_26320 4073203b49f2ffd80c28d455190e805e 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 4.7E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_26320 4073203b49f2ffd80c28d455190e805e 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 4.7E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_26320 4073203b49f2ffd80c28d455190e805e 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 4.7E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_26320 4073203b49f2ffd80c28d455190e805e 254 SUPERFAMILY SSF51735 6 251 1.31E-77 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_00630 57d43d7c3cde6d9a8ab915826aa17d67 305 Pfam PF01925 Sulfite exporter TauE/SafE 18 286 3.7E-47 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 AMK58_04165 7da96863d9f3d3d8e796a3af0100be5d 194 Pfam PF00313 'Cold-shock' DNA-binding domain 122 183 6.9E-8 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMK58_04165 7da96863d9f3d3d8e796a3af0100be5d 194 SUPERFAMILY SSF50249 119 185 4.41E-10 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMK58_04165 7da96863d9f3d3d8e796a3af0100be5d 194 SUPERFAMILY SSF69754 4 114 1.57E-17 T 11-10-2018 IPR036567 Ribosome hibernation promotion factor-like AMK58_04165 7da96863d9f3d3d8e796a3af0100be5d 194 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 6 110 9.4E-15 T 11-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 AMK58_04165 7da96863d9f3d3d8e796a3af0100be5d 194 Gene3D G3DSA:2.40.50.140 121 185 2.2E-9 T 11-10-2018 AMK58_04165 7da96863d9f3d3d8e796a3af0100be5d 194 Gene3D G3DSA:3.30.160.100 4 114 2.8E-13 T 11-10-2018 IPR036567 Ribosome hibernation promotion factor-like AMK58_27300 a0775d4ad0ccdfcad99ef9bb24d75ba3 360 Gene3D G3DSA:3.40.710.10 12 355 1.8E-64 T 11-10-2018 AMK58_27300 a0775d4ad0ccdfcad99ef9bb24d75ba3 360 SUPERFAMILY SSF56601 33 327 2.7E-55 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMK58_27300 a0775d4ad0ccdfcad99ef9bb24d75ba3 360 Pfam PF00144 Beta-lactamase 30 345 3.0E-48 T 11-10-2018 IPR001466 Beta-lactamase-related AMK58_02455 91ce07c57ca18ff7d87b6bbb30198dd7 363 Gene3D G3DSA:2.40.128.140 60 361 3.2E-81 T 11-10-2018 IPR037107 Putative outer membrane protein superfamily AMK58_02455 91ce07c57ca18ff7d87b6bbb30198dd7 363 Pfam PF09982 Uncharacterized protein conserved in bacteria (DUF2219) 62 362 1.3E-95 T 11-10-2018 IPR018707 Protein of unknown function DUF2219 AMK58_23400 2efc04e50c8c827121a95ec78c4b7cc2 447 SUPERFAMILY SSF51261 147 391 4.55E-66 T 11-10-2018 IPR011055 Duplicated hybrid motif AMK58_23400 2efc04e50c8c827121a95ec78c4b7cc2 447 Gene3D G3DSA:3.10.450.350 168 411 1.8E-85 T 11-10-2018 AMK58_23400 2efc04e50c8c827121a95ec78c4b7cc2 447 Gene3D G3DSA:2.70.70.10 266 396 1.8E-85 T 11-10-2018 IPR011055 Duplicated hybrid motif AMK58_23400 2efc04e50c8c827121a95ec78c4b7cc2 447 Pfam PF01551 Peptidase family M23 294 390 1.2E-31 T 11-10-2018 IPR016047 Peptidase M23 AMK58_05410 42d3fc2825d3fd48a6e7d8f4e550da00 235 Pfam PF08511 COQ9 115 191 4.6E-31 T 11-10-2018 IPR013718 COQ9 Reactome: R-HSA-2142789 AMK58_05410 42d3fc2825d3fd48a6e7d8f4e550da00 235 SUPERFAMILY SSF48498 85 186 6.67E-5 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMK58_05410 42d3fc2825d3fd48a6e7d8f4e550da00 235 TIGRFAM TIGR02396 diverge_rpsU: rpsU-divergently transcribed protein 14 193 1.5E-48 T 11-10-2018 IPR012762 Ubiquinone biosynthesis protein COQ9 GO:0006744 Reactome: R-HSA-2142789 AMK58_05410 42d3fc2825d3fd48a6e7d8f4e550da00 235 Gene3D G3DSA:1.10.357.10 4 186 1.2E-40 T 11-10-2018 AMK58_00920 a9990071e6a8235e463892679fe16e00 353 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_00920 a9990071e6a8235e463892679fe16e00 353 SUPERFAMILY SSF50331 237 348 1.08E-13 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMK58_00920 a9990071e6a8235e463892679fe16e00 353 Pfam PF00005 ABC transporter 21 162 1.4E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_00920 a9990071e6a8235e463892679fe16e00 353 Pfam PF08402 TOBE domain 279 348 5.3E-9 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMK58_00920 a9990071e6a8235e463892679fe16e00 353 SMART SM00382 29 212 4.0E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_00920 a9990071e6a8235e463892679fe16e00 353 Gene3D G3DSA:3.40.50.300 1 239 1.8E-73 T 11-10-2018 AMK58_00920 a9990071e6a8235e463892679fe16e00 353 SUPERFAMILY SSF52540 5 243 2.79E-80 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_12475 d956deea65e674ce8a549fee2e33c6c9 304 SUPERFAMILY SSF103481 52 152 3.4E-11 T 11-10-2018 AMK58_12475 d956deea65e674ce8a549fee2e33c6c9 304 SUPERFAMILY SSF103481 219 301 4.45E-6 T 11-10-2018 AMK58_12475 d956deea65e674ce8a549fee2e33c6c9 304 Pfam PF00892 EamA-like transporter family 19 149 1.1E-12 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_18270 4123e8c6cd063d524da7a8ef3e3423f0 60 Pfam PF04325 Protein of unknown function (DUF465) 8 52 2.0E-12 T 11-10-2018 IPR007420 Protein of unknown function DUF465 AMK58_18270 4123e8c6cd063d524da7a8ef3e3423f0 60 Gene3D G3DSA:1.20.58.660 1 59 3.3E-7 T 11-10-2018 AMK58_24775 7d1b0eaf6b812773a9d5bbbbc3018d96 296 SUPERFAMILY SSF53850 24 293 8.58E-80 T 11-10-2018 AMK58_24775 7d1b0eaf6b812773a9d5bbbbc3018d96 296 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 31 279 2.2E-66 T 11-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 AMK58_24775 7d1b0eaf6b812773a9d5bbbbc3018d96 296 Gene3D G3DSA:3.40.190.10 33 289 1.7E-87 T 11-10-2018 AMK58_24775 7d1b0eaf6b812773a9d5bbbbc3018d96 296 Gene3D G3DSA:3.40.190.100 114 226 1.7E-87 T 11-10-2018 AMK58_03685 8367b62ebb168105c8570e8bd02d48f7 177 Pfam PF05981 CreA protein 38 164 1.1E-43 T 11-10-2018 IPR010292 Uncharacterised protein family CreA AMK58_23675 963c0908a9661d6f972732551ef1a6f3 193 Gene3D G3DSA:3.40.50.300 2 183 3.8E-7 T 11-10-2018 AMK58_23675 963c0908a9661d6f972732551ef1a6f3 193 Pfam PF13521 AAA domain 9 172 1.7E-43 T 11-10-2018 IPR038727 NadR/Ttd14, AAA domain AMK58_23675 963c0908a9661d6f972732551ef1a6f3 193 SUPERFAMILY SSF52540 6 180 6.32E-22 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_18840 c343791ba7dc269a2d44f5ea7ed32827 171 Pfam PF05638 Type VI secretion system effector, Hcp 7 144 5.3E-14 T 11-10-2018 IPR008514 Type VI secretion system effector, Hcp AMK58_18840 c343791ba7dc269a2d44f5ea7ed32827 171 Gene3D G3DSA:2.30.110.20 2 166 3.3E-18 T 11-10-2018 IPR036624 Hcp1-like superfamily AMK58_18840 c343791ba7dc269a2d44f5ea7ed32827 171 SUPERFAMILY SSF141452 4 166 8.63E-19 T 11-10-2018 IPR036624 Hcp1-like superfamily AMK58_13665 edd687b292d56532e5ece7a20ce7c45b 417 Gene3D G3DSA:3.40.640.10 61 313 9.3E-113 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMK58_13665 edd687b292d56532e5ece7a20ce7c45b 417 Pfam PF00155 Aminotransferase class I and II 50 412 3.4E-41 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMK58_13665 edd687b292d56532e5ece7a20ce7c45b 417 SUPERFAMILY SSF53383 19 416 2.78E-79 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMK58_13665 edd687b292d56532e5ece7a20ce7c45b 417 Gene3D G3DSA:3.90.1150.10 31 405 9.3E-113 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMK58_03955 9353bcf7ffbe15ac436c115d23d5dc44 601 Gene3D G3DSA:3.30.450.330 218 545 1.5E-91 T 11-10-2018 AMK58_03955 9353bcf7ffbe15ac436c115d23d5dc44 601 Pfam PF00905 Penicillin binding protein transpeptidase domain 244 539 4.2E-57 T 11-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AMK58_03955 9353bcf7ffbe15ac436c115d23d5dc44 601 Gene3D G3DSA:3.40.710.10 278 459 1.5E-91 T 11-10-2018 AMK58_03955 9353bcf7ffbe15ac436c115d23d5dc44 601 SUPERFAMILY SSF56519 81 219 1.83E-36 T 11-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 AMK58_03955 9353bcf7ffbe15ac436c115d23d5dc44 601 SUPERFAMILY SSF56601 217 551 6.36E-83 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMK58_03955 9353bcf7ffbe15ac436c115d23d5dc44 601 Pfam PF03717 Penicillin-binding Protein dimerisation domain 81 192 6.4E-12 T 11-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AMK58_24220 7f39cdcefcfc19e817ae2bf20dc112d9 124 SUPERFAMILY SSF52172 9 122 2.56E-29 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_24220 7f39cdcefcfc19e817ae2bf20dc112d9 124 SMART SM00448 7 118 4.9E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_24220 7f39cdcefcfc19e817ae2bf20dc112d9 124 Pfam PF00072 Response regulator receiver domain 9 119 1.3E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_24220 7f39cdcefcfc19e817ae2bf20dc112d9 124 Gene3D G3DSA:3.40.50.2300 4 124 3.7E-35 T 11-10-2018 AMK58_18625 0b2760026fafd0114f73653ba46a46dc 281 Gene3D G3DSA:3.20.20.60 2 251 2.8E-77 T 11-10-2018 AMK58_18625 0b2760026fafd0114f73653ba46a46dc 281 SUPERFAMILY SSF51621 6 274 4.22E-64 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMK58_18625 0b2760026fafd0114f73653ba46a46dc 281 Pfam PF13714 Phosphoenolpyruvate phosphomutase 13 252 5.3E-77 T 11-10-2018 AMK58_06160 da83b3715c0b893ce106209b16842dff 102 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 3 102 19.608 T 11-10-2018 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 AMK58_06160 da83b3715c0b893ce106209b16842dff 102 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 8 97 1.1E-23 T 11-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like AMK58_07680 f771705f53c8dbd03f32c25a0db347a0 144 SUPERFAMILY SSF55729 3 140 1.89E-28 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_07680 f771705f53c8dbd03f32c25a0db347a0 144 Pfam PF00583 Acetyltransferase (GNAT) family 30 127 4.9E-14 T 11-10-2018 IPR000182 GNAT domain AMK58_07680 f771705f53c8dbd03f32c25a0db347a0 144 Gene3D G3DSA:3.40.630.30 5 142 4.3E-35 T 11-10-2018 AMK58_01325 3b9dffec1744bce93d6e37b2b599b1a5 412 Pfam PF08242 Methyltransferase domain 58 158 2.2E-13 T 11-10-2018 IPR013217 Methyltransferase type 12 AMK58_01325 3b9dffec1744bce93d6e37b2b599b1a5 412 SUPERFAMILY SSF53335 46 271 1.49E-28 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_16720 7b7947c81536b23deac739d7ab4b7a16 237 Pfam PF00005 ABC transporter 21 165 1.2E-23 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_16720 7b7947c81536b23deac739d7ab4b7a16 237 Gene3D G3DSA:3.40.50.300 1 237 5.2E-52 T 11-10-2018 AMK58_16720 7b7947c81536b23deac739d7ab4b7a16 237 SUPERFAMILY SSF52540 5 234 2.88E-50 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_16720 7b7947c81536b23deac739d7ab4b7a16 237 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_16720 7b7947c81536b23deac739d7ab4b7a16 237 SMART SM00382 30 216 0.0044 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_16740 782b245f6c5839e339979ab528f7512d 204 SUPERFAMILY SSF52499 7 201 2.62E-41 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 AMK58_16740 782b245f6c5839e339979ab528f7512d 204 Gene3D G3DSA:3.40.50.850 3 204 3.0E-43 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 AMK58_16740 782b245f6c5839e339979ab528f7512d 204 Pfam PF00857 Isochorismatase family 11 191 3.9E-35 T 11-10-2018 IPR000868 Isochorismatase-like GO:0003824 AMK58_16260 a31fdf8123185686a13e3edb1503e304 179 Pfam PF11821 Protein of unknown function (DUF3341) 8 176 4.1E-63 T 11-10-2018 IPR021776 Protein of unknown function DUF3341 AMK58_27885 6cde11fb6a6c852d305288328d2149cc 108 Pfam PF09919 Uncharacterized conserved protein (DUF2149) 14 101 1.4E-24 T 11-10-2018 IPR018676 Protein of unknown function DUF2149 AMK58_04315 e530e8312c8457042a54fdea335f1191 203 SUPERFAMILY SSF89155 16 201 2.35E-50 T 11-10-2018 IPR036411 TorD-like superfamily AMK58_04315 e530e8312c8457042a54fdea335f1191 203 Pfam PF02613 Nitrate reductase delta subunit 48 169 1.4E-30 T 11-10-2018 IPR020945 DMSO/Nitrate reductase chaperone AMK58_04315 e530e8312c8457042a54fdea335f1191 203 Gene3D G3DSA:1.10.3480.10 13 202 4.2E-38 T 11-10-2018 AMK58_09030 7f394d9febc1cc75794d46a35cc5df3f 162 Pfam PF02469 Fasciclin domain 38 161 2.6E-39 T 11-10-2018 IPR000782 FAS1 domain AMK58_09030 7f394d9febc1cc75794d46a35cc5df3f 162 SUPERFAMILY SSF82153 28 161 1.05E-43 T 11-10-2018 IPR036378 FAS1 domain superfamily AMK58_09030 7f394d9febc1cc75794d46a35cc5df3f 162 Gene3D G3DSA:2.30.180.10 25 162 1.3E-51 T 11-10-2018 IPR036378 FAS1 domain superfamily AMK58_09030 7f394d9febc1cc75794d46a35cc5df3f 162 SMART SM00554 62 162 1.4E-36 T 11-10-2018 IPR000782 FAS1 domain AMK58_22865 cc7c7654c6a8cfe1e473160ca07c4a5f 118 Pfam PF09585 Conserved hypothetical protein (Lin0512_fam) 5 116 2.9E-42 T 11-10-2018 IPR011719 Conserved hypothetical protein CHP02058 AMK58_22865 cc7c7654c6a8cfe1e473160ca07c4a5f 118 TIGRFAM TIGR02058 lin0512_fam: conserved hypothetical protein 3 118 2.6E-46 T 11-10-2018 IPR011719 Conserved hypothetical protein CHP02058 AMK58_22865 cc7c7654c6a8cfe1e473160ca07c4a5f 118 Gene3D G3DSA:3.30.1330.20 1 118 2.1E-41 T 11-10-2018 IPR037103 Tubulin/FtsZ, C-terminal domain superfamily Reactome: R-HSA-380320 AMK58_17320 49956bbaf558d6bed4a97eb49baf50d4 259 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 3 247 44.529 T 11-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 AMK58_17320 49956bbaf558d6bed4a97eb49baf50d4 259 SUPERFAMILY SSF88713 4 254 8.45E-97 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMK58_17320 49956bbaf558d6bed4a97eb49baf50d4 259 Gene3D G3DSA:3.20.20.370 3 257 4.7E-98 T 11-10-2018 AMK58_17320 49956bbaf558d6bed4a97eb49baf50d4 259 Pfam PF03746 LamB/YcsF family 5 243 5.7E-96 T 11-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 AMK58_14790 504fbf2e399a508733e677c2d82a7271 289 Pfam PF02653 Branched-chain amino acid transport system / permease component 11 277 7.0E-40 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_28915 9c179279199a567422abed869910714c 560 Gene3D G3DSA:3.40.50.2000 410 421 9.1E-7 T 11-10-2018 AMK58_28915 9c179279199a567422abed869910714c 560 Pfam PF00534 Glycosyl transferases group 1 192 339 3.9E-14 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 AMK58_28915 9c179279199a567422abed869910714c 560 Gene3D G3DSA:3.40.50.2000 181 340 2.3E-25 T 11-10-2018 AMK58_28915 9c179279199a567422abed869910714c 560 Gene3D G3DSA:3.40.50.2000 373 409 9.1E-7 T 11-10-2018 AMK58_28915 9c179279199a567422abed869910714c 560 Gene3D G3DSA:3.40.50.2000 139 180 2.3E-25 T 11-10-2018 AMK58_28915 9c179279199a567422abed869910714c 560 SUPERFAMILY SSF53756 154 425 3.93E-41 T 11-10-2018 AMK58_27575 aefa7d3ed62bd56ac41f99e05d8b0969 252 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 10 188 1.9E-4 T 11-10-2018 AMK58_27575 aefa7d3ed62bd56ac41f99e05d8b0969 252 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMK58_27575 aefa7d3ed62bd56ac41f99e05d8b0969 252 TIGRFAM TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase 5 252 1.6E-118 T 11-10-2018 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase GO:0008678|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.127|MetaCyc: PWY-6507|MetaCyc: PWY-7562 AMK58_27575 aefa7d3ed62bd56ac41f99e05d8b0969 252 SUPERFAMILY SSF51735 5 251 9.34E-80 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_27575 aefa7d3ed62bd56ac41f99e05d8b0969 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 1.4E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_27575 aefa7d3ed62bd56ac41f99e05d8b0969 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 1.4E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_27575 aefa7d3ed62bd56ac41f99e05d8b0969 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 1.4E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_27575 aefa7d3ed62bd56ac41f99e05d8b0969 252 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 249 1.3E-58 T 11-10-2018 AMK58_27575 aefa7d3ed62bd56ac41f99e05d8b0969 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 2.7E-43 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_27575 aefa7d3ed62bd56ac41f99e05d8b0969 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 2.7E-43 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_27575 aefa7d3ed62bd56ac41f99e05d8b0969 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 233 2.7E-43 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_27575 aefa7d3ed62bd56ac41f99e05d8b0969 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 2.7E-43 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_27575 aefa7d3ed62bd56ac41f99e05d8b0969 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 2.7E-43 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_27575 aefa7d3ed62bd56ac41f99e05d8b0969 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 2.7E-43 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_27575 aefa7d3ed62bd56ac41f99e05d8b0969 252 Gene3D G3DSA:3.40.50.720 1 252 3.7E-81 T 11-10-2018 AMK58_01800 c597eca234863e1f2964b1089740c99a 1124 Gene3D G3DSA:2.30.30.940 809 908 1.3E-70 T 11-10-2018 AMK58_01800 c597eca234863e1f2964b1089740c99a 1124 SUPERFAMILY SSF52540 523 685 4.24E-24 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_01800 c597eca234863e1f2964b1089740c99a 1124 SUPERFAMILY SSF52540 651 959 2.74E-32 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_01800 c597eca234863e1f2964b1089740c99a 1124 Pfam PF13604 AAA domain 537 711 9.6E-29 T 11-10-2018 AMK58_01800 c597eca234863e1f2964b1089740c99a 1124 Gene3D G3DSA:3.40.50.300 524 693 1.3E-70 T 11-10-2018 AMK58_01800 c597eca234863e1f2964b1089740c99a 1124 Gene3D G3DSA:3.40.50.300 694 959 1.3E-70 T 11-10-2018 AMK58_01800 c597eca234863e1f2964b1089740c99a 1124 Pfam PF13538 UvrD-like helicase C-terminal domain 908 953 8.7E-12 T 11-10-2018 IPR027785 UvrD-like helicase C-terminal domain AMK58_03180 6b8d5712106cc0b56b2bf0ee06125108 260 SUPERFAMILY SSF51735 1 256 2.09E-59 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_03180 6b8d5712106cc0b56b2bf0ee06125108 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 3.5E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_03180 6b8d5712106cc0b56b2bf0ee06125108 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 3.5E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_03180 6b8d5712106cc0b56b2bf0ee06125108 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 3.5E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_03180 6b8d5712106cc0b56b2bf0ee06125108 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 219 239 3.5E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_03180 6b8d5712106cc0b56b2bf0ee06125108 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 3.5E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_03180 6b8d5712106cc0b56b2bf0ee06125108 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 3.5E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_03180 6b8d5712106cc0b56b2bf0ee06125108 260 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 255 4.0E-39 T 11-10-2018 AMK58_03180 6b8d5712106cc0b56b2bf0ee06125108 260 Gene3D G3DSA:3.40.50.720 1 258 2.5E-63 T 11-10-2018 AMK58_05360 820bfdeccc9dc12fcfd2be1997f602b5 193 SUPERFAMILY SSF161111 2 175 2.22E-19 T 11-10-2018 IPR027469 Cation efflux transmembrane domain superfamily AMK58_00640 eccd1f52d9c3cf06a250ce0b9bfd7860 183 Gene3D G3DSA:3.40.50.620 32 171 5.8E-12 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_00640 eccd1f52d9c3cf06a250ce0b9bfd7860 183 SUPERFAMILY SSF52402 36 171 7.67E-12 T 11-10-2018 AMK58_00640 eccd1f52d9c3cf06a250ce0b9bfd7860 183 Pfam PF00582 Universal stress protein family 33 171 5.2E-13 T 11-10-2018 IPR006016 UspA AMK58_25370 f8296666da9dac9627a37dbf7bfa1038 799 SUPERFAMILY SSF48452 432 713 8.26E-5 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_08445 627049e01243b7a434a9d6a41ad7e705 137 SUPERFAMILY SSF52172 16 135 1.14E-16 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_08445 627049e01243b7a434a9d6a41ad7e705 137 Gene3D G3DSA:3.40.50.2300 8 136 4.6E-13 T 11-10-2018 AMK58_08445 627049e01243b7a434a9d6a41ad7e705 137 Pfam PF00072 Response regulator receiver domain 18 129 1.9E-6 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_08445 627049e01243b7a434a9d6a41ad7e705 137 SMART SM00448 16 129 3.0E-6 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_10190 b6b3433a86ec63d2c812ebdfca0691fd 242 Pfam PF03963 Flagellar hook capping protein - N-terminal region 21 93 1.1E-20 T 11-10-2018 IPR005648 Flagellar hook capping protein AMK58_10190 b6b3433a86ec63d2c812ebdfca0691fd 242 Gene3D G3DSA:2.60.40.4070 119 208 2.2E-16 T 11-10-2018 AMK58_10190 b6b3433a86ec63d2c812ebdfca0691fd 242 Gene3D G3DSA:2.30.30.910 111 236 2.2E-16 T 11-10-2018 AMK58_10190 b6b3433a86ec63d2c812ebdfca0691fd 242 Pfam PF13860 FlgD Ig-like domain 128 192 9.3E-12 T 11-10-2018 IPR025965 FlgD Ig-like domain AMK58_10040 59c69fba2d69c3e551e5f4754fa2a4e9 256 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 13 249 2.1E-53 T 11-10-2018 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 AMK58_10040 59c69fba2d69c3e551e5f4754fa2a4e9 256 Pfam PF01311 Bacterial export proteins, family 1 13 246 6.0E-56 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 AMK58_10040 59c69fba2d69c3e551e5f4754fa2a4e9 256 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 81 100 9.1E-18 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 AMK58_10040 59c69fba2d69c3e551e5f4754fa2a4e9 256 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 21 42 9.1E-18 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 AMK58_10040 59c69fba2d69c3e551e5f4754fa2a4e9 256 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 203 222 9.1E-18 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 AMK58_10040 59c69fba2d69c3e551e5f4754fa2a4e9 256 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 181 203 9.1E-18 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 AMK58_23485 6cf1ea87ef20c34caa1e75b4f00154d5 234 Gene3D G3DSA:1.10.3720.10 22 226 3.9E-22 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_23485 6cf1ea87ef20c34caa1e75b4f00154d5 234 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 48 230 6.2E-32 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_23485 6cf1ea87ef20c34caa1e75b4f00154d5 234 SUPERFAMILY SSF161098 26 212 2.09E-26 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_00275 5380ad03a608d5fc91dadbe80e71a650 454 Gene3D G3DSA:2.120.10.30 65 432 7.2E-14 T 11-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like AMK58_00275 5380ad03a608d5fc91dadbe80e71a650 454 SUPERFAMILY SSF50952 60 429 4.18E-40 T 11-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 AMK58_00275 5380ad03a608d5fc91dadbe80e71a650 454 Pfam PF07995 Glucose / Sorbosone dehydrogenase 197 355 6.9E-10 T 11-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase AMK58_19630 a2ae0076394826cd77c6e066d489053e 179 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 30 161 3.1E-21 T 11-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ AMK58_11170 698e71f83dbd5b4270259028ed730b57 563 SUPERFAMILY SSF56801 20 432 1.44E-47 T 11-10-2018 AMK58_11170 698e71f83dbd5b4270259028ed730b57 563 SUPERFAMILY SSF54637 468 556 1.21E-9 T 11-10-2018 IPR029069 HotDog domain superfamily AMK58_11170 698e71f83dbd5b4270259028ed730b57 563 Gene3D G3DSA:3.10.129.10 455 562 2.4E-25 T 11-10-2018 AMK58_11170 698e71f83dbd5b4270259028ed730b57 563 Gene3D G3DSA:3.40.50.12780 110 326 3.9E-27 T 11-10-2018 AMK58_11170 698e71f83dbd5b4270259028ed730b57 563 Pfam PF00501 AMP-binding enzyme 120 271 6.5E-16 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMK58_11170 698e71f83dbd5b4270259028ed730b57 563 Gene3D G3DSA:3.30.300.30 329 454 3.0E-10 T 11-10-2018 AMK58_29070 7d316915f6883eb0bd69bfbc60121d27 327 Gene3D G3DSA:3.90.550.10 1 249 4.3E-36 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_29070 7d316915f6883eb0bd69bfbc60121d27 327 SUPERFAMILY SSF53448 3 270 2.34E-40 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_29070 7d316915f6883eb0bd69bfbc60121d27 327 Pfam PF13641 Glycosyltransferase like family 2 5 240 7.3E-14 T 11-10-2018 AMK58_19730 35cd14f546f80c2182d8fdd4a868f969 233 Gene3D G3DSA:3.40.50.880 1 231 2.6E-49 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_19730 35cd14f546f80c2182d8fdd4a868f969 233 Pfam PF00117 Glutamine amidotransferase class-I 25 180 3.2E-15 T 11-10-2018 IPR017926 Glutamine amidotransferase AMK58_19730 35cd14f546f80c2182d8fdd4a868f969 233 SUPERFAMILY SSF52317 33 230 2.66E-41 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMK58_27735 2a75e79780f3d032dfb743f514d3c3cc 196 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 53 183 1.3E-23 T 11-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ AMK58_25165 a9433b297e470c5048f2b2d0ce73edf6 208 SUPERFAMILY SSF50475 12 177 1.1E-17 T 11-10-2018 AMK58_25165 a9433b297e470c5048f2b2d0ce73edf6 208 Gene3D G3DSA:2.30.110.10 36 159 5.2E-17 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 AMK58_25165 a9433b297e470c5048f2b2d0ce73edf6 208 TIGRFAM TIGR04025 PPOX_FMN_DR2398: pyridoxamine 5'-phosphate oxidase, FMN-binding family 12 207 8.9E-61 T 11-10-2018 IPR024029 Pyridoxamine 5-phosphate oxidase, FMN-dependent AMK58_25165 a9433b297e470c5048f2b2d0ce73edf6 208 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 37 125 2.0E-9 T 11-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AMK58_12770 4d8a1485583072804cb4599494f431a9 100 Pfam PF04341 Protein of unknown function, DUF485 10 96 1.7E-37 T 11-10-2018 IPR007436 Protein of unknown function DUF485 AMK58_03720 4a965c584b35e30e82a9664db8a1b81d 187 SUPERFAMILY SSF55729 6 168 7.55E-32 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_03720 4a965c584b35e30e82a9664db8a1b81d 187 Gene3D G3DSA:3.40.630.30 1 179 8.3E-50 T 11-10-2018 AMK58_03720 4a965c584b35e30e82a9664db8a1b81d 187 Pfam PF13420 Acetyltransferase (GNAT) domain 7 161 1.6E-23 T 11-10-2018 AMK58_08075 ed40c11b010a65c0e0c8755da91263df 406 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 165 194 2.0E-22 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_08075 ed40c11b010a65c0e0c8755da91263df 406 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 271 300 2.0E-22 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_08075 ed40c11b010a65c0e0c8755da91263df 406 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 319 348 2.0E-22 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_08075 ed40c11b010a65c0e0c8755da91263df 406 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 242 269 2.0E-22 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_08075 ed40c11b010a65c0e0c8755da91263df 406 SUPERFAMILY SSF58104 60 397 2.49E-55 T 11-10-2018 AMK58_08075 ed40c11b010a65c0e0c8755da91263df 406 SMART SM00283 144 398 2.1E-48 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_08075 ed40c11b010a65c0e0c8755da91263df 406 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 211 375 1.5E-32 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_08075 ed40c11b010a65c0e0c8755da91263df 406 Gene3D G3DSA:1.10.287.950 107 401 3.3E-55 T 11-10-2018 AMK58_28415 e999cb5d94d3327495739b55ba31a919 186 Pfam PF02371 Transposase IS116/IS110/IS902 family 55 142 8.7E-25 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AMK58_14920 e0d76387ebd0497ec026f2501fcefea9 244 Pfam PF02571 Precorrin-6x reductase CbiJ/CobK 3 241 1.4E-74 T 11-10-2018 IPR003723 Precorrin-6x reductase GO:0009236|GO:0016994|GO:0055114 AMK58_14920 e0d76387ebd0497ec026f2501fcefea9 244 TIGRFAM TIGR00715 precor6x_red: precorrin-6x reductase 1 236 3.2E-46 T 11-10-2018 IPR003723 Precorrin-6x reductase GO:0009236|GO:0016994|GO:0055114 AMK58_09670 f1eb411daaf9439a0bef1d7da084a32b 364 Pfam PF00072 Response regulator receiver domain 17 137 1.8E-20 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_09670 f1eb411daaf9439a0bef1d7da084a32b 364 SUPERFAMILY SSF52172 16 149 1.99E-29 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_09670 f1eb411daaf9439a0bef1d7da084a32b 364 Gene3D G3DSA:3.40.50.12740 15 203 1.4E-26 T 11-10-2018 AMK58_09670 f1eb411daaf9439a0bef1d7da084a32b 364 SMART SM00448 15 140 3.8E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_02220 1f47bdc24c15871cb34053496f78dd64 75 Pfam PF06568 Domain of unknown function (DUF1127) 30 61 2.8E-12 T 11-10-2018 IPR009506 Protein of unknown function DUF1127 AMK58_17180 ec82246601210c4cf6a46375476e3e9e 135 SUPERFAMILY SSF117916 38 133 1.05E-30 T 11-10-2018 IPR034904 Fe-S cluster assembly domain superfamily AMK58_17180 ec82246601210c4cf6a46375476e3e9e 135 Pfam PF01883 Iron-sulfur cluster assembly protein 40 112 4.3E-18 T 11-10-2018 IPR002744 MIP18 family-like AMK58_17180 ec82246601210c4cf6a46375476e3e9e 135 Gene3D G3DSA:3.30.300.130 30 134 2.4E-36 T 11-10-2018 IPR034904 Fe-S cluster assembly domain superfamily AMK58_26880 a0c53e2cdecbcd34348bfce8d8f5cc0b 60 Gene3D G3DSA:2.60.260.40 4 55 2.7E-20 T 11-10-2018 AMK58_26880 a0c53e2cdecbcd34348bfce8d8f5cc0b 60 ProDom PD007270 C CYTOCHROME OXIDASE MEMBRANE VB SUBUNIT POLYPEPTIDE MITOCHONDRION OXIDOREDUCTASE INNER 14 49 0.006 T 11-10-2018 IPR002124 Cytochrome c oxidase, subunit Vb GO:0004129|GO:0005740 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_26880 a0c53e2cdecbcd34348bfce8d8f5cc0b 60 Pfam PF10276 Zinc-finger domain 13 47 1.3E-16 T 11-10-2018 IPR019401 Zinc finger, CHCC-type Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_06930 0f9788f3e3f89a13580398f820a667ad 411 Pfam PF07690 Major Facilitator Superfamily 2 251 2.2E-27 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMK58_06930 0f9788f3e3f89a13580398f820a667ad 411 TIGRFAM TIGR04259 oxa_formateAnti: oxalate/formate antiporter 1 394 5.6E-183 T 11-10-2018 IPR026355 Oxalate/formate antiporter GO:0016021|GO:0019531|GO:0019532 AMK58_06930 0f9788f3e3f89a13580398f820a667ad 411 SUPERFAMILY SSF103473 7 389 8.76E-50 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_06930 0f9788f3e3f89a13580398f820a667ad 411 Gene3D G3DSA:1.20.1250.20 1 396 1.4E-47 T 11-10-2018 AMK58_00810 be290d51c53aa58dbc0bac69816a002a 471 SUPERFAMILY SSF51412 31 316 7.02E-7 T 11-10-2018 AMK58_00810 be290d51c53aa58dbc0bac69816a002a 471 Gene3D G3DSA:3.20.20.70 20 471 5.5E-23 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_07805 1de736ac7bcfd7a8448f6b015a6cd750 285 Pfam PF14326 Domain of unknown function (DUF4384) 175 243 2.8E-7 T 11-10-2018 IPR025493 Domain of unknown function DUF4384 AMK58_21770 305353a147c1b0123734a12c261621b6 232 Pfam PF02104 SURF1 family 11 214 4.4E-43 T 11-10-2018 IPR002994 Surfeit locus 1/Shy1 GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_07330 9153a9ab48dc637e4ba26e55e67f01ca 196 SUPERFAMILY SSF55811 5 174 1.76E-28 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMK58_07330 9153a9ab48dc637e4ba26e55e67f01ca 196 ProSitePatterns PS00893 Nudix box signature. 81 102 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMK58_07330 9153a9ab48dc637e4ba26e55e67f01ca 196 Pfam PF00293 NUDIX domain 51 169 4.3E-16 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMK58_07330 9153a9ab48dc637e4ba26e55e67f01ca 196 Gene3D G3DSA:3.90.79.10 5 185 1.0E-34 T 11-10-2018 AMK58_14390 0ba2cb21d98cfadb9b7e457c00892482 468 Pfam PF13372 Alginate export 67 455 3.2E-83 T 11-10-2018 IPR025388 Alginate export domain AMK58_01705 e104677437d4d52050316f093b054b63 219 SUPERFAMILY SSF55729 1 130 6.85E-16 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_01705 e104677437d4d52050316f093b054b63 219 Gene3D G3DSA:3.40.630.30 1 170 1.3E-30 T 11-10-2018 AMK58_01705 e104677437d4d52050316f093b054b63 219 Pfam PF00583 Acetyltransferase (GNAT) family 24 127 4.2E-5 T 11-10-2018 IPR000182 GNAT domain AMK58_24590 0a8ffb0633c704772d4b9fc91bcd5dab 392 Pfam PF13527 Acetyltransferase (GNAT) domain 42 147 1.3E-8 T 11-10-2018 AMK58_24590 0a8ffb0633c704772d4b9fc91bcd5dab 392 SUPERFAMILY SSF55729 23 288 1.13E-16 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_24590 0a8ffb0633c704772d4b9fc91bcd5dab 392 Gene3D G3DSA:3.40.630.30 16 149 5.0E-8 T 11-10-2018 AMK58_16965 44536723c641b6973cbb763864a6f7b9 208 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 15 31 0.058 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_16965 44536723c641b6973cbb763864a6f7b9 208 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 55 71 0.005 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_16965 44536723c641b6973cbb763864a6f7b9 208 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 91 107 9.6E-4 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_16965 44536723c641b6973cbb763864a6f7b9 208 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 72 89 8.4E-5 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_16965 44536723c641b6973cbb763864a6f7b9 208 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 33 49 0.0068 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMK58_16965 44536723c641b6973cbb763864a6f7b9 208 SUPERFAMILY SSF51120 12 194 7.48E-25 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_16965 44536723c641b6973cbb763864a6f7b9 208 Gene3D G3DSA:2.150.10.10 51 204 1.5E-18 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_16965 44536723c641b6973cbb763864a6f7b9 208 Gene3D G3DSA:2.150.10.10 1 50 2.0E-9 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMK58_16965 44536723c641b6973cbb763864a6f7b9 208 PRINTS PR00313 NodO calcium binding signature 73 81 7.8E-11 T 11-10-2018 AMK58_16965 44536723c641b6973cbb763864a6f7b9 208 PRINTS PR00313 NodO calcium binding signature 30 41 7.8E-11 T 11-10-2018 AMK58_16965 44536723c641b6973cbb763864a6f7b9 208 PRINTS PR00313 NodO calcium binding signature 91 100 7.8E-11 T 11-10-2018 AMK58_16965 44536723c641b6973cbb763864a6f7b9 208 PRINTS PR00313 NodO calcium binding signature 82 90 7.8E-11 T 11-10-2018 AMK58_16965 44536723c641b6973cbb763864a6f7b9 208 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 69 87 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMK58_09895 5e5e8e6f66a4e58d65718df012408ca0 232 TIGRFAM TIGR00164 PS_decarb_rel: phosphatidylserine decarboxylase homolog 11 220 1.5E-53 T 11-10-2018 IPR033175 Phosphatidylserine decarboxylase, archaeal-type KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 AMK58_09895 5e5e8e6f66a4e58d65718df012408ca0 232 Hamap MF_00664 Phosphatidylserine decarboxylase proenzyme [psd]. 10 220 37.774 T 11-10-2018 IPR033175 Phosphatidylserine decarboxylase, archaeal-type KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 AMK58_09895 5e5e8e6f66a4e58d65718df012408ca0 232 Pfam PF02666 Phosphatidylserine decarboxylase 45 216 3.2E-29 T 11-10-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 AMK58_00550 bfae46cf90c26afff15e21297ea3bdfe 228 Pfam PF02589 LUD domain 124 226 5.7E-28 T 11-10-2018 IPR003741 LUD domain AMK58_00550 bfae46cf90c26afff15e21297ea3bdfe 228 SUPERFAMILY SSF100950 47 227 5.02E-42 T 11-10-2018 IPR037171 NagB/RpiA transferase-like AMK58_00550 bfae46cf90c26afff15e21297ea3bdfe 228 Gene3D G3DSA:3.40.50.10420 45 226 1.4E-44 T 11-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily AMK58_22620 3ce1edbcde30af0ad45b75b3a1778f78 616 SUPERFAMILY SSF56954 14 479 1.02E-53 T 11-10-2018 AMK58_22620 3ce1edbcde30af0ad45b75b3a1778f78 616 Gene3D G3DSA:1.20.1600.10 61 480 1.5E-41 T 11-10-2018 AMK58_22620 3ce1edbcde30af0ad45b75b3a1778f78 616 Pfam PF02321 Outer membrane efflux protein 68 267 9.4E-20 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 AMK58_22620 3ce1edbcde30af0ad45b75b3a1778f78 616 Pfam PF02321 Outer membrane efflux protein 295 473 6.8E-9 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 AMK58_18455 12ee6b21c985a00e3d3ff16a3d5c917a 553 Gene3D G3DSA:1.20.58.340 441 517 1.2E-5 T 11-10-2018 AMK58_18455 12ee6b21c985a00e3d3ff16a3d5c917a 553 Pfam PF01544 CorA-like Mg2+ transporter protein 434 511 2.9E-9 T 11-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 AMK58_18455 12ee6b21c985a00e3d3ff16a3d5c917a 553 SUPERFAMILY SSF144083 453 510 6.67E-7 T 11-10-2018 AMK58_13075 1bbd61c312abdd640403d07a429963a1 161 Pfam PF04214 Protein of unknown function, DUF 68 136 7.2E-34 T 11-10-2018 IPR007332 Protein of unknown function DUF411 AMK58_22710 042094407d751df256ca328188923e78 267 Pfam PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) 43 259 5.9E-36 T 11-10-2018 IPR019108 Cytochrome c oxidase caa3-type, assembly factor CtaG-related AMK58_24950 b67950d66f31158fdaac265b2f3b961e 155 Gene3D G3DSA:1.20.120.1490 59 152 6.1E-6 T 11-10-2018 AMK58_24950 b67950d66f31158fdaac265b2f3b961e 155 Pfam PF13801 Heavy-metal resistance 21 146 4.5E-21 T 11-10-2018 IPR025961 Heavy-metal resistance protein AMK58_22500 fa9021820327874a7c28077d7f8e51b8 387 SUPERFAMILY SSF53901 11 233 8.65E-25 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_22500 fa9021820327874a7c28077d7f8e51b8 387 SUPERFAMILY SSF53901 235 377 4.76E-24 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_22500 fa9021820327874a7c28077d7f8e51b8 387 Gene3D G3DSA:3.40.47.10 1 387 3.6E-108 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMK58_20320 c9614158e7e1078b7c0799e33745c17c 121 Gene3D G3DSA:3.30.70.100 1 121 3.2E-44 T 11-10-2018 AMK58_20320 c9614158e7e1078b7c0799e33745c17c 121 Pfam PF07237 Protein of unknown function (DUF1428) 2 107 1.6E-44 T 11-10-2018 IPR009874 Protein of unknown function DUF1428 AMK58_20320 c9614158e7e1078b7c0799e33745c17c 121 PIRSF PIRSF007028 1 121 3.0E-48 T 11-10-2018 IPR009874 Protein of unknown function DUF1428 AMK58_20320 c9614158e7e1078b7c0799e33745c17c 121 SUPERFAMILY SSF54909 1 120 7.51E-48 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel AMK58_22580 9732f963ee289c7af99ecf898b7941d4 300 Pfam PF08893 Domain of unknown function (DUF1839) 4 295 1.8E-123 T 11-10-2018 IPR014989 Protein of unknown function DUF1839 AMK58_16405 41ca13c931f0edbdc73f6d3b2e04a7b1 423 SUPERFAMILY SSF48239 80 355 3.14E-7 T 11-10-2018 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid AMK58_16510 c68bd0939be00b38add345a380d2c85d 280 Pfam PF00583 Acetyltransferase (GNAT) family 35 104 7.0E-7 T 11-10-2018 IPR000182 GNAT domain AMK58_16510 c68bd0939be00b38add345a380d2c85d 280 Gene3D G3DSA:3.40.630.90 135 280 1.9E-9 T 11-10-2018 AMK58_16510 c68bd0939be00b38add345a380d2c85d 280 Gene3D G3DSA:3.40.630.30 1 127 1.6E-9 T 11-10-2018 AMK58_16510 c68bd0939be00b38add345a380d2c85d 280 SUPERFAMILY SSF55729 4 259 1.22E-35 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_10075 5ea917eb8f423a19efd80b79d1caba88 111 Pfam PF04347 Flagellar biosynthesis protein, FliO 25 79 3.9E-9 T 11-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 AMK58_25075 37603f93ca592e81fd11619c6c6b06ec 70 Pfam PF04964 Flp/Fap pilin component 19 62 6.6E-14 T 11-10-2018 IPR007047 Flp/Fap pilin component AMK58_18770 fd69d39f59fcb615c605004bfcf23c1e 1378 Pfam PF14331 ImcF-related N-terminal domain 156 375 5.2E-38 T 11-10-2018 IPR025743 ImcF-related, N-terminal domain AMK58_03465 0c9871ea4302effecc19f33a8b7de65d 417 SMART SM00897 65 270 1.4E-53 T 11-10-2018 IPR013702 FIST domain, N-terminal AMK58_03465 0c9871ea4302effecc19f33a8b7de65d 417 Pfam PF10442 FIST C domain 274 400 1.5E-15 T 11-10-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 AMK58_03465 0c9871ea4302effecc19f33a8b7de65d 417 Pfam PF08495 FIST N domain 68 268 3.5E-32 T 11-10-2018 IPR013702 FIST domain, N-terminal AMK58_03465 0c9871ea4302effecc19f33a8b7de65d 417 SMART SM01204 271 402 6.2E-33 T 11-10-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 AMK58_04305 e62480decfa7e733a52c296d676f484f 164 Pfam PF11749 Protein of unknown function (DUF3305) 13 154 4.9E-45 T 11-10-2018 IPR021736 Protein of unknown function DUF3305 AMK58_21700 7d421210805743a9160be32c54544ff7 484 Pfam PF02386 Cation transport protein 41 478 9.1E-55 T 11-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 AMK58_21700 7d421210805743a9160be32c54544ff7 484 PIRSF PIRSF006247 1 484 6.5E-170 T 11-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 AMK58_16460 ce1ec1c11d29d336bd821db094931d6e 261 Gene3D G3DSA:3.40.630.30 4 182 1.1E-11 T 11-10-2018 AMK58_16460 ce1ec1c11d29d336bd821db094931d6e 261 SUPERFAMILY SSF55729 27 172 1.67E-14 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_12400 c8afd28778442545f66f3ddbedd4f996 334 Pfam PF00535 Glycosyl transferase family 2 21 152 1.6E-20 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMK58_12400 c8afd28778442545f66f3ddbedd4f996 334 SUPERFAMILY SSF53448 19 227 4.69E-34 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_12400 c8afd28778442545f66f3ddbedd4f996 334 Gene3D G3DSA:3.90.550.10 10 235 1.0E-28 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_19020 3424175ec30134fb5f112e7b3cda717c 179 Pfam PF13302 Acetyltransferase (GNAT) domain 17 144 1.6E-9 T 11-10-2018 IPR000182 GNAT domain AMK58_19020 3424175ec30134fb5f112e7b3cda717c 179 SUPERFAMILY SSF55729 16 157 2.13E-26 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_19020 3424175ec30134fb5f112e7b3cda717c 179 Gene3D G3DSA:3.40.630.30 12 168 2.2E-35 T 11-10-2018 AMK58_16835 12e5260dc39a3e30ac533dadc9e50925 267 Pfam PF00902 Sec-independent protein translocase protein (TatC) 18 237 6.2E-71 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMK58_16835 12e5260dc39a3e30ac533dadc9e50925 267 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 170 198 1.6E-43 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMK58_16835 12e5260dc39a3e30ac533dadc9e50925 267 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 93 111 1.6E-43 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMK58_16835 12e5260dc39a3e30ac533dadc9e50925 267 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 111 137 1.6E-43 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMK58_16835 12e5260dc39a3e30ac533dadc9e50925 267 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 15 42 1.6E-43 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMK58_16835 12e5260dc39a3e30ac533dadc9e50925 267 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 11 254 17.008 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMK58_16835 12e5260dc39a3e30ac533dadc9e50925 267 ProSitePatterns PS01218 TatC family signature. 170 189 - T 11-10-2018 IPR019820 Sec-independent periplasmic protein translocase, conserved site AMK58_16835 12e5260dc39a3e30ac533dadc9e50925 267 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 16 242 1.0E-65 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMK58_24865 8fc76de8a116c28bbab6744feff96722 252 SUPERFAMILY SSF53850 11 251 8.95E-35 T 11-10-2018 AMK58_24865 8fc76de8a116c28bbab6744feff96722 252 Gene3D G3DSA:3.40.190.10 14 249 1.1E-33 T 11-10-2018 AMK58_24865 8fc76de8a116c28bbab6744feff96722 252 Pfam PF13531 Bacterial extracellular solute-binding protein 13 249 3.1E-42 T 11-10-2018 AMK58_24865 8fc76de8a116c28bbab6744feff96722 252 Gene3D G3DSA:3.40.190.10 88 213 1.1E-33 T 11-10-2018 AMK58_09355 c66cf568d8db6c3fdd9ce37149343afc 448 Gene3D G3DSA:2.40.160.60 28 448 9.6E-135 T 11-10-2018 AMK58_09355 c66cf568d8db6c3fdd9ce37149343afc 448 SUPERFAMILY SSF56935 28 444 1.24E-85 T 11-10-2018 AMK58_09355 c66cf568d8db6c3fdd9ce37149343afc 448 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 25 448 3.6E-103 T 11-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) AMK58_25130 2a310a5eb7460849de989db4e8ade662 188 Pfam PF07811 TadE-like protein 6 44 2.1E-9 T 11-10-2018 IPR012495 TadE-like AMK58_22150 d4d23a1fd44cfd78010c3bb267a614ef 244 Gene3D G3DSA:3.60.20.10 2 237 2.2E-22 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMK58_22150 d4d23a1fd44cfd78010c3bb267a614ef 244 SUPERFAMILY SSF56235 2 241 7.99E-32 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMK58_22150 d4d23a1fd44cfd78010c3bb267a614ef 244 PIRSF PIRSF009120 1 244 2.3E-102 T 11-10-2018 IPR016545 Uncharacterised conserved protein UCP009120, proteasome-type protease, Sll0069 AMK58_01530 4a450d51df38fdd6d5cabc1470272c4b 549 Gene3D G3DSA:3.30.70.1450 197 274 2.4E-8 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 AMK58_01530 4a450d51df38fdd6d5cabc1470272c4b 549 Gene3D G3DSA:3.30.70.1450 280 358 1.2E-9 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 AMK58_01530 4a450d51df38fdd6d5cabc1470272c4b 549 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 378 532 9.3E-42 T 11-10-2018 IPR006512 YidE/YbjL duplication AMK58_01530 4a450d51df38fdd6d5cabc1470272c4b 549 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 16 166 8.9E-33 T 11-10-2018 IPR006512 YidE/YbjL duplication AMK58_01530 4a450d51df38fdd6d5cabc1470272c4b 549 Pfam PF02080 TrkA-C domain 293 355 3.3E-11 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AMK58_01530 4a450d51df38fdd6d5cabc1470272c4b 549 Pfam PF02080 TrkA-C domain 210 274 6.5E-9 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AMK58_01530 4a450d51df38fdd6d5cabc1470272c4b 549 Pfam PF06826 Predicted Permease Membrane Region 11 178 2.2E-35 T 11-10-2018 IPR006512 YidE/YbjL duplication AMK58_01530 4a450d51df38fdd6d5cabc1470272c4b 549 Pfam PF06826 Predicted Permease Membrane Region 374 545 5.9E-45 T 11-10-2018 IPR006512 YidE/YbjL duplication AMK58_01530 4a450d51df38fdd6d5cabc1470272c4b 549 SUPERFAMILY SSF116726 285 360 1.57E-12 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 AMK58_01530 4a450d51df38fdd6d5cabc1470272c4b 549 SUPERFAMILY SSF116726 207 274 4.84E-10 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 AMK58_13620 fbea0bbd6fce459cbdb96d72eeaa402c 303 SUPERFAMILY SSF52540 43 279 1.3E-13 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_13620 fbea0bbd6fce459cbdb96d72eeaa402c 303 Gene3D G3DSA:3.40.50.300 37 211 5.5E-9 T 11-10-2018 AMK58_13620 fbea0bbd6fce459cbdb96d72eeaa402c 303 Pfam PF05621 Bacterial TniB protein 22 278 3.9E-72 T 11-10-2018 IPR008868 Bacterial TniB AMK58_17015 739ce5fb2518f9e243891eea47ac6280 660 SUPERFAMILY SSF48452 465 643 5.84E-9 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_17015 739ce5fb2518f9e243891eea47ac6280 660 SUPERFAMILY SSF48452 340 516 3.04E-6 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_17015 739ce5fb2518f9e243891eea47ac6280 660 Gene3D G3DSA:1.25.40.10 447 652 4.8E-12 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_17015 739ce5fb2518f9e243891eea47ac6280 660 Gene3D G3DSA:1.25.40.10 266 446 9.8E-8 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_28310 64bcfb49e5f2bfd787a33163b8cf1379 560 SUPERFAMILY SSF53098 164 311 3.03E-10 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMK58_28310 64bcfb49e5f2bfd787a33163b8cf1379 560 Pfam PF00665 Integrase core domain 169 302 1.4E-7 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMK58_28310 64bcfb49e5f2bfd787a33163b8cf1379 560 Gene3D G3DSA:3.30.420.10 164 370 1.3E-19 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMK58_00120 a25b3521e5295837d84fa020547d97d9 159 SUPERFAMILY SSF103642 138 158 2.29E-8 T 11-10-2018 AMK58_00120 a25b3521e5295837d84fa020547d97d9 159 Pfam PF02810 SEC-C motif 141 159 2.0E-10 T 11-10-2018 IPR004027 SEC-C motif AMK58_00120 a25b3521e5295837d84fa020547d97d9 159 SUPERFAMILY SSF54427 25 127 2.21E-31 T 11-10-2018 IPR032710 NTF2-like domain superfamily AMK58_00120 a25b3521e5295837d84fa020547d97d9 159 Gene3D G3DSA:3.10.450.50 1 159 3.1E-49 T 11-10-2018 AMK58_21100 65c29b787d3c9a9294dcd206a8f07a49 329 SUPERFAMILY SSF51735 7 264 6.95E-56 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_21100 65c29b787d3c9a9294dcd206a8f07a49 329 Gene3D G3DSA:3.40.50.720 8 292 5.2E-53 T 11-10-2018 AMK58_21100 65c29b787d3c9a9294dcd206a8f07a49 329 Pfam PF01370 NAD dependent epimerase/dehydratase family 8 216 5.4E-18 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMK58_23650 73e947e2945a7009af390832ba93c235 125 SUPERFAMILY SSF52172 8 103 5.27E-18 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_23650 73e947e2945a7009af390832ba93c235 125 Gene3D G3DSA:3.40.50.2300 3 117 6.4E-18 T 11-10-2018 AMK58_23650 73e947e2945a7009af390832ba93c235 125 Pfam PF00072 Response regulator receiver domain 11 97 2.1E-13 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_24040 632d2dc29183959b0e11a0f4e0a169c9 371 Pfam PF01594 AI-2E family transporter 22 353 2.3E-46 T 11-10-2018 IPR002549 Transmembrane protein TqsA-like AMK58_11885 f12e49634c984188b0578ee0a3184089 262 SUPERFAMILY SSF53448 19 259 1.62E-54 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_11885 f12e49634c984188b0578ee0a3184089 262 Gene3D G3DSA:3.90.550.10 17 261 1.5E-76 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_11885 f12e49634c984188b0578ee0a3184089 262 Hamap MF_00057 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 16 257 34.628 T 11-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 AMK58_11885 f12e49634c984188b0578ee0a3184089 262 Pfam PF02348 Cytidylyltransferase 19 231 1.4E-39 T 11-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 AMK58_11885 f12e49634c984188b0578ee0a3184089 262 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 19 250 1.9E-61 T 11-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 AMK58_18710 600b37544d1a5ba05dcb6e3b657d521c 142 Pfam PF07370 Protein of unknown function (DUF1489) 5 142 4.3E-50 T 11-10-2018 IPR008320 Uncharacterised conserved protein UCP032025 AMK58_18710 600b37544d1a5ba05dcb6e3b657d521c 142 PIRSF PIRSF032025 1 142 1.7E-46 T 11-10-2018 IPR008320 Uncharacterised conserved protein UCP032025 AMK58_01205 9dfc24c44b39a0e01d5c0c547e4b0c2b 395 Pfam PF06779 Uncharacterised MFS-type transporter YbfB 12 372 5.1E-85 T 11-10-2018 IPR010645 Uncharacterised MFS-type transporter YbfB AMK58_01205 9dfc24c44b39a0e01d5c0c547e4b0c2b 395 Gene3D G3DSA:1.20.1250.20 3 380 5.3E-25 T 11-10-2018 AMK58_01205 9dfc24c44b39a0e01d5c0c547e4b0c2b 395 SUPERFAMILY SSF103473 4 375 1.15E-35 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_28180 d66d00ec143d6c6458872f9d222ff7cc 334 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 53 60 - T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMK58_28180 d66d00ec143d6c6458872f9d222ff7cc 334 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 8 332 1.5E-125 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AMK58_28180 d66d00ec143d6c6458872f9d222ff7cc 334 Gene3D G3DSA:3.40.50.1370 5 329 4.4E-134 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AMK58_28180 d66d00ec143d6c6458872f9d222ff7cc 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 53 72 6.2E-24 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMK58_28180 d66d00ec143d6c6458872f9d222ff7cc 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 135 146 6.2E-24 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMK58_28180 d66d00ec143d6c6458872f9d222ff7cc 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 267 276 6.2E-24 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMK58_28180 d66d00ec143d6c6458872f9d222ff7cc 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 297 320 6.2E-24 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMK58_28180 d66d00ec143d6c6458872f9d222ff7cc 334 Gene3D G3DSA:3.40.50.1370 151 319 4.4E-134 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AMK58_28180 d66d00ec143d6c6458872f9d222ff7cc 334 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 7 333 80.178 T 11-10-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 AMK58_28180 d66d00ec143d6c6458872f9d222ff7cc 334 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 8 148 4.4E-46 T 11-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 AMK58_28180 d66d00ec143d6c6458872f9d222ff7cc 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 124 138 2.0E-30 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AMK58_28180 d66d00ec143d6c6458872f9d222ff7cc 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 229 239 2.0E-30 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AMK58_28180 d66d00ec143d6c6458872f9d222ff7cc 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 311 322 2.0E-30 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AMK58_28180 d66d00ec143d6c6458872f9d222ff7cc 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 84 97 2.0E-30 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AMK58_28180 d66d00ec143d6c6458872f9d222ff7cc 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 51 65 2.0E-30 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AMK58_28180 d66d00ec143d6c6458872f9d222ff7cc 334 SUPERFAMILY SSF53671 4 333 6.02E-98 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AMK58_28180 d66d00ec143d6c6458872f9d222ff7cc 334 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 156 330 7.0E-51 T 11-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 AMK58_05190 fd149f33724cb708bf2050f280e4b81f 63 Pfam PF13770 Domain of unknown function (DUF4169) 2 55 2.3E-21 T 11-10-2018 IPR025227 Protein of unknown function DUF4169 AMK58_16590 4360fa2f699243feb1c25d9b1c8060dd 266 SUPERFAMILY SSF52096 13 264 3.52E-71 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMK58_16590 4360fa2f699243feb1c25d9b1c8060dd 266 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 108 128 - T 11-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 AMK58_16590 4360fa2f699243feb1c25d9b1c8060dd 266 Gene3D G3DSA:3.90.226.10 10 209 1.1E-58 T 11-10-2018 AMK58_16590 4360fa2f699243feb1c25d9b1c8060dd 266 Pfam PF00378 Enoyl-CoA hydratase/isomerase 18 263 2.5E-47 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMK58_16590 4360fa2f699243feb1c25d9b1c8060dd 266 Gene3D G3DSA:1.10.12.10 210 264 2.0E-12 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal AMK58_13655 aef7f1a2fa3d163492362888fbbb510a 220 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 55 208 4.8E-28 T 11-10-2018 IPR004564 Outer membrane lipoprotein carrier protein LolA-like AMK58_13655 aef7f1a2fa3d163492362888fbbb510a 220 Gene3D G3DSA:2.50.20.10 41 215 3.5E-22 T 11-10-2018 AMK58_13655 aef7f1a2fa3d163492362888fbbb510a 220 SUPERFAMILY SSF89392 45 212 1.02E-25 T 11-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX AMK58_26240 1ccb78300ea0e5334cd841624ed80998 139 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 91 136 1.4E-9 T 11-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain AMK58_26240 1ccb78300ea0e5334cd841624ed80998 139 Pfam PF00460 Flagella basal body rod protein 10 37 2.9E-7 T 11-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 AMK58_26240 1ccb78300ea0e5334cd841624ed80998 139 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 9 138 5.2E-45 T 11-10-2018 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 AMK58_26240 1ccb78300ea0e5334cd841624ed80998 139 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 16 36 - T 11-10-2018 IPR019776 Flagellar basal body rod protein, conserved site AMK58_15740 bf6d8b04478d8b51e7775fea29ff0ded 248 SUPERFAMILY SSF52096 1 231 2.05E-44 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMK58_15740 bf6d8b04478d8b51e7775fea29ff0ded 248 Gene3D G3DSA:3.90.226.10 6 240 4.8E-43 T 11-10-2018 AMK58_15740 bf6d8b04478d8b51e7775fea29ff0ded 248 Pfam PF00378 Enoyl-CoA hydratase/isomerase 15 193 2.5E-28 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMK58_13790 5ffa18822333b6f16d321662a920b99c 112 Pfam PF01381 Helix-turn-helix 11 65 2.7E-15 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMK58_13790 5ffa18822333b6f16d321662a920b99c 112 SUPERFAMILY SSF47413 3 68 4.29E-18 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMK58_13790 5ffa18822333b6f16d321662a920b99c 112 SMART SM00530 10 65 4.9E-15 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMK58_13790 5ffa18822333b6f16d321662a920b99c 112 Gene3D G3DSA:1.10.260.40 2 67 8.2E-19 T 11-10-2018 AMK58_19220 2d831ee669fcaf3cd33d2c819b262abf 271 Gene3D G3DSA:3.40.50.150 67 223 6.0E-33 T 11-10-2018 AMK58_19220 2d831ee669fcaf3cd33d2c819b262abf 271 Pfam PF05050 Methyltransferase FkbM domain 76 226 7.4E-18 T 11-10-2018 IPR006342 Methyltransferase FkbM AMK58_19220 2d831ee669fcaf3cd33d2c819b262abf 271 SUPERFAMILY SSF53335 71 240 9.13E-41 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_19220 2d831ee669fcaf3cd33d2c819b262abf 271 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 73 208 4.2E-25 T 11-10-2018 IPR006342 Methyltransferase FkbM AMK58_16905 5b79b9e5d1916b92a3327b76bf758340 311 Pfam PF00494 Squalene/phytoene synthase 27 294 2.1E-59 T 11-10-2018 AMK58_16905 5b79b9e5d1916b92a3327b76bf758340 311 Gene3D G3DSA:1.10.600.10 8 284 2.6E-65 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily AMK58_16905 5b79b9e5d1916b92a3327b76bf758340 311 SUPERFAMILY SSF48576 19 307 6.33E-66 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily AMK58_16905 5b79b9e5d1916b92a3327b76bf758340 311 TIGRFAM TIGR03465 HpnD: squalene synthase HpnD 25 305 8.9E-85 T 11-10-2018 IPR017828 Squalene synthase HpnD-like GO:0016117|GO:0016767 AMK58_16905 5b79b9e5d1916b92a3327b76bf758340 311 ProSitePatterns PS01045 Squalene and phytoene synthases signature 2. 178 203 - T 11-10-2018 IPR019845 Squalene/phytoene synthase, conserved site GO:0016765 Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 AMK58_05380 d432a5b3192b552786af5dfc41a260aa 140 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 54 137 9.4E-37 T 11-10-2018 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 AMK58_27825 718f0b265a1bf4d07d7c4c982c3ea875 271 Pfam PF07728 AAA domain (dynein-related subfamily) 38 172 1.9E-37 T 11-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 AMK58_27825 718f0b265a1bf4d07d7c4c982c3ea875 271 Pfam PF08406 CbbQ/NirQ/NorQ C-terminal 185 267 2.9E-29 T 11-10-2018 IPR013615 CbbQ/NirQ/NorQ, C-terminal AMK58_27825 718f0b265a1bf4d07d7c4c982c3ea875 271 Gene3D G3DSA:3.40.50.300 23 190 2.0E-30 T 11-10-2018 AMK58_27825 718f0b265a1bf4d07d7c4c982c3ea875 271 SUPERFAMILY SSF52540 32 235 4.67E-32 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_28700 718f0b265a1bf4d07d7c4c982c3ea875 271 Pfam PF07728 AAA domain (dynein-related subfamily) 38 172 1.9E-37 T 11-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 AMK58_28700 718f0b265a1bf4d07d7c4c982c3ea875 271 Pfam PF08406 CbbQ/NirQ/NorQ C-terminal 185 267 2.9E-29 T 11-10-2018 IPR013615 CbbQ/NirQ/NorQ, C-terminal AMK58_28700 718f0b265a1bf4d07d7c4c982c3ea875 271 Gene3D G3DSA:3.40.50.300 23 190 2.0E-30 T 11-10-2018 AMK58_28700 718f0b265a1bf4d07d7c4c982c3ea875 271 SUPERFAMILY SSF52540 32 235 4.67E-32 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_05415 ad777349a2e7a6036e7e5379ab3ae393 125 Gene3D G3DSA:3.30.1460.30 5 105 5.9E-31 T 11-10-2018 AMK58_05415 ad777349a2e7a6036e7e5379ab3ae393 125 Pfam PF04993 TfoX N-terminal domain 14 104 9.1E-29 T 11-10-2018 IPR007076 TfoX, N-terminal AMK58_05415 ad777349a2e7a6036e7e5379ab3ae393 125 SUPERFAMILY SSF159894 6 105 3.66E-29 T 11-10-2018 AMK58_18550 8f809267ff84f1c9aa692346315eb3b6 253 SUPERFAMILY SSF55315 7 86 5.89E-7 T 11-10-2018 IPR029064 50S ribosomal protein L30e-like AMK58_18550 8f809267ff84f1c9aa692346315eb3b6 253 Gene3D G3DSA:3.40.1280.10 112 253 2.1E-29 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMK58_18550 8f809267ff84f1c9aa692346315eb3b6 253 SUPERFAMILY SSF75217 120 250 1.77E-24 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases AMK58_18550 8f809267ff84f1c9aa692346315eb3b6 253 Pfam PF00588 SpoU rRNA Methylase family 121 246 5.4E-22 T 11-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AMK58_18550 8f809267ff84f1c9aa692346315eb3b6 253 Gene3D G3DSA:3.30.1330.30 7 98 1.4E-7 T 11-10-2018 IPR029064 50S ribosomal protein L30e-like AMK58_21765 ae7c3af2dc2d31e345e96c4fb2ad9749 123 TIGRFAM TIGR02847 CyoD: cytochrome o ubiquinol oxidase subunit IV 18 114 5.5E-35 T 11-10-2018 IPR014210 Cytochrome o ubiquinol oxidase subunit IV GO:0008827|GO:0015990|GO:0016021 AMK58_21765 ae7c3af2dc2d31e345e96c4fb2ad9749 123 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 25 98 8.7E-18 T 11-10-2018 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 AMK58_16395 8238b1f169ca88dafd6cda285a6450ef 426 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 419 1.2E-136 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 AMK58_16395 8238b1f169ca88dafd6cda285a6450ef 426 PIRSF PIRSF006066 1 426 2.7E-137 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 AMK58_16395 8238b1f169ca88dafd6cda285a6450ef 426 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 8 416 3.4E-116 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit AMK58_24345 127704097bd78b3e273687227474dcc3 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 136 160 4.4E-16 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMK58_24345 127704097bd78b3e273687227474dcc3 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 173 192 4.4E-16 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMK58_24345 127704097bd78b3e273687227474dcc3 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 55 77 4.4E-16 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMK58_24345 127704097bd78b3e273687227474dcc3 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 99 124 4.4E-16 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMK58_24345 127704097bd78b3e273687227474dcc3 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 193 212 4.4E-16 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMK58_24345 127704097bd78b3e273687227474dcc3 253 Pfam PF01061 ABC-2 type transporter 6 216 1.0E-32 T 11-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 AMK58_24345 127704097bd78b3e273687227474dcc3 253 PIRSF PIRSF006648 10 250 3.6E-31 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMK58_05810 3d2e5be089a1e4c50aee7938a5f72bdc 140 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 11-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_05810 3d2e5be089a1e4c50aee7938a5f72bdc 140 SUPERFAMILY SSF64263 1 119 1.96E-48 T 11-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_05810 3d2e5be089a1e4c50aee7938a5f72bdc 140 TIGRFAM TIGR00059 L17: ribosomal protein bL17 7 117 4.9E-43 T 11-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_05810 3d2e5be089a1e4c50aee7938a5f72bdc 140 Gene3D G3DSA:3.90.1030.10 1 117 5.7E-45 T 11-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_05810 3d2e5be089a1e4c50aee7938a5f72bdc 140 Pfam PF01196 Ribosomal protein L17 20 116 2.1E-33 T 11-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_05810 3d2e5be089a1e4c50aee7938a5f72bdc 140 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 25.086 T 11-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_18195 99a7d7e67a390f333088eedcdee5962e 126 Pfam PF04138 GtrA-like protein 6 119 1.4E-24 T 11-10-2018 IPR007267 GtrA-like protein GO:0000271|GO:0016021 AMK58_17815 4e96e4369ed335b98e43e565784a5cde 346 Pfam PF05128 Domain of unknown function (DUF697) 184 341 6.2E-47 T 11-10-2018 IPR021147 Protein of unknown function DUF697 AMK58_17815 4e96e4369ed335b98e43e565784a5cde 346 TIGRFAM TIGR01620 hyp_HI0043: TIGR01620 family protein 56 340 1.8E-70 T 11-10-2018 IPR006507 Uncharacterised protein family UPF0283 AMK58_24835 be6f2aead0e83b093a09d12b74435d7a 833 Pfam PF07690 Major Facilitator Superfamily 424 741 2.2E-15 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMK58_24835 be6f2aead0e83b093a09d12b74435d7a 833 Gene3D G3DSA:1.20.1250.20 421 816 2.9E-27 T 11-10-2018 AMK58_24835 be6f2aead0e83b093a09d12b74435d7a 833 SUPERFAMILY SSF103473 424 821 1.44E-31 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_19990 3ea5a8d611177befe3c4a902163d1c98 157 PIRSF PIRSF002721 1 157 2.4E-35 T 11-10-2018 IPR016364 Surface antigen, Rickettsia type AMK58_19990 3ea5a8d611177befe3c4a902163d1c98 157 Pfam PF05433 Glycine zipper 2TM domain 30 71 5.3E-8 T 11-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 AMK58_19990 3ea5a8d611177befe3c4a902163d1c98 157 Pfam PF16998 17 kDa outer membrane surface antigen 75 157 1.0E-13 T 11-10-2018 IPR032635 Surface antigen domain AMK58_16455 09dd2ad6e2c3e5063a7eb2c36a83890d 350 Gene3D G3DSA:3.40.50.2300 160 344 6.1E-43 T 11-10-2018 AMK58_16455 09dd2ad6e2c3e5063a7eb2c36a83890d 350 Pfam PF04392 ABC transporter substrate binding protein 83 347 6.1E-29 T 11-10-2018 IPR007487 ABC transporter, substrate-binding protein AMK58_16455 09dd2ad6e2c3e5063a7eb2c36a83890d 350 Gene3D G3DSA:3.40.50.2300 61 319 6.1E-43 T 11-10-2018 AMK58_25805 840777b98645429775a292ca41955c5a 180 Pfam PF14196 L-2-amino-thiazoline-4-carboxylic acid hydrolase 25 168 1.2E-37 T 11-10-2018 IPR026002 L-2-amino-thiazoline-4-carboxylic acid hydrolase AMK58_13485 f9f7fda3fc7361006d8e12bb47d79b12 63 Pfam PF03050 Transposase IS66 family 1 35 2.9E-12 T 11-10-2018 IPR004291 Transposase, IS66 AMK58_14370 0aad956eeeac49f516bf28583810378f 99 Pfam PF07235 Protein of unknown function (DUF1427) 3 82 1.6E-34 T 11-10-2018 IPR009872 Protein of unknown function DUF1427 AMK58_14370 0aad956eeeac49f516bf28583810378f 99 TIGRFAM TIGR03510 XapX: XapX domain 3 50 4.6E-20 T 11-10-2018 IPR020017 XapX domain AMK58_04820 54fc312319edd0b8d5fb75fb6c021c90 249 PIRSF PIRSF000851 16 248 5.5E-85 T 11-10-2018 IPR026027 Phosphatidylcholine synthase Pcs KEGG: 00564+2.7.8.24|MetaCyc: PWY-6826 AMK58_25110 d30f643509a2f1a38d4bde8b688ae04d 321 Gene3D G3DSA:1.20.81.30 147 255 8.1E-8 T 11-10-2018 AMK58_25110 d30f643509a2f1a38d4bde8b688ae04d 321 Pfam PF00482 Type II secretion system (T2SS), protein F 154 273 4.2E-20 T 11-10-2018 IPR018076 Type II secretion system F domain AMK58_27055 5aa26c697b87f4a08c5706fb7951e73d 290 SUPERFAMILY SSF63829 5 286 7.52E-65 T 11-10-2018 AMK58_27055 5aa26c697b87f4a08c5706fb7951e73d 290 Gene3D G3DSA:2.120.10.30 1 289 3.0E-93 T 11-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like AMK58_27055 5aa26c697b87f4a08c5706fb7951e73d 290 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 13 258 1.5E-75 T 11-10-2018 IPR013658 SMP-30/Gluconolactonase/LRE-like region AMK58_27055 5aa26c697b87f4a08c5706fb7951e73d 290 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 240 258 3.1E-38 T 11-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMK58_27055 5aa26c697b87f4a08c5706fb7951e73d 290 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 159 179 3.1E-38 T 11-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMK58_27055 5aa26c697b87f4a08c5706fb7951e73d 290 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 198 215 3.1E-38 T 11-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMK58_27055 5aa26c697b87f4a08c5706fb7951e73d 290 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 136 158 3.1E-38 T 11-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMK58_27055 5aa26c697b87f4a08c5706fb7951e73d 290 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 95 116 3.1E-38 T 11-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMK58_27055 5aa26c697b87f4a08c5706fb7951e73d 290 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 14 31 3.1E-38 T 11-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMK58_09130 0af30c5850b82db6c513c31f3453b0b0 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 288 298 3.0E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_09130 0af30c5850b82db6c513c31f3453b0b0 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 270 284 3.0E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_09130 0af30c5850b82db6c513c31f3453b0b0 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 326 339 3.0E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_09130 0af30c5850b82db6c513c31f3453b0b0 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 301 319 3.0E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMK58_09130 0af30c5850b82db6c513c31f3453b0b0 349 Gene3D G3DSA:3.30.565.10 175 340 8.0E-36 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_09130 0af30c5850b82db6c513c31f3453b0b0 349 SUPERFAMILY SSF55874 181 339 7.2E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMK58_09130 0af30c5850b82db6c513c31f3453b0b0 349 Gene3D G3DSA:1.10.287.130 73 174 3.9E-19 T 11-10-2018 AMK58_09130 0af30c5850b82db6c513c31f3453b0b0 349 SMART SM00387 224 342 2.8E-23 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_09130 0af30c5850b82db6c513c31f3453b0b0 349 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 226 341 8.5E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMK58_21255 bf7ab9ef3aca067a9d07203a554659b6 174 Pfam PF11749 Protein of unknown function (DUF3305) 10 149 2.1E-43 T 11-10-2018 IPR021736 Protein of unknown function DUF3305 AMK58_17870 92054c9eef46091adfacc01951a164fd 340 Pfam PF13449 Esterase-like activity of phytase 64 314 2.4E-37 T 11-10-2018 IPR027372 Phytase-like domain AMK58_17870 92054c9eef46091adfacc01951a164fd 340 PIRSF PIRSF031900 7 330 2.5E-48 T 11-10-2018 IPR014567 Uncharacterised conserved protein UCP031900 AMK58_17870 92054c9eef46091adfacc01951a164fd 340 SUPERFAMILY SSF63829 65 314 6.15E-7 T 11-10-2018 AMK58_23990 814ac39dc589d8c245b165a03e5a5f1d 211 Pfam PF08241 Methyltransferase domain 45 140 2.2E-21 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 AMK58_23990 814ac39dc589d8c245b165a03e5a5f1d 211 Gene3D G3DSA:3.40.50.150 1 198 1.7E-32 T 11-10-2018 AMK58_23990 814ac39dc589d8c245b165a03e5a5f1d 211 SUPERFAMILY SSF53335 7 205 4.11E-35 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_20520 9e8e977b9a68f67bd91025fbf5115055 747 SUPERFAMILY SSF52540 546 700 3.42E-23 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_20520 9e8e977b9a68f67bd91025fbf5115055 747 Gene3D G3DSA:3.40.50.300 470 730 3.4E-45 T 11-10-2018 AMK58_20520 9e8e977b9a68f67bd91025fbf5115055 747 Pfam PF02706 Chain length determinant protein 4 94 1.4E-11 T 11-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 AMK58_13735 146792f10b7d6267646b30dc842cdef8 294 Pfam PF08902 Domain of unknown function (DUF1848) 2 265 4.0E-86 T 11-10-2018 IPR014998 Protein of unknown function DUF1848 AMK58_07530 43ccddb062a5c4e035c0c57810da9254 104 Pfam PF02625 XdhC and CoxI family 12 79 3.1E-28 T 11-10-2018 IPR003777 XdhC- CoxI AMK58_02085 bce3ca566ec919256105f59b8b692265 296 Hamap MF_00188 Protease HtpX [htpX]. 4 284 28.917 T 11-10-2018 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 AMK58_02085 bce3ca566ec919256105f59b8b692265 296 Pfam PF01435 Peptidase family M48 73 284 8.0E-39 T 11-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AMK58_02085 bce3ca566ec919256105f59b8b692265 296 Gene3D G3DSA:3.30.2010.10 60 149 2.9E-31 T 11-10-2018 AMK58_20715 b48540a696fcca0d15c3309fce409760 409 Pfam PF10503 Esterase PHB depolymerase 139 327 9.3E-67 T 11-10-2018 IPR010126 Esterase, PHB depolymerase GO:0005576|GO:0016787 AMK58_20715 b48540a696fcca0d15c3309fce409760 409 Gene3D G3DSA:3.40.50.1820 121 402 1.7E-62 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_20715 b48540a696fcca0d15c3309fce409760 409 TIGRFAM TIGR01840 esterase_phb: esterase, PHB depolymerase family 141 324 6.8E-44 T 11-10-2018 IPR010126 Esterase, PHB depolymerase GO:0005576|GO:0016787 AMK58_20715 b48540a696fcca0d15c3309fce409760 409 SUPERFAMILY SSF53474 134 400 5.27E-42 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_20845 98bad85e4c1d14a20bf494d23077df08 327 Gene3D G3DSA:1.10.3470.10 7 327 3.1E-52 T 11-10-2018 IPR037294 ABC transporter, BtuC-like AMK58_20845 98bad85e4c1d14a20bf494d23077df08 327 Pfam PF01032 FecCD transport family 33 323 4.4E-51 T 11-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 AMK58_20845 98bad85e4c1d14a20bf494d23077df08 327 SUPERFAMILY SSF81345 10 323 1.44E-53 T 11-10-2018 IPR037294 ABC transporter, BtuC-like AMK58_05965 d098e3ac10b18ed5c95d5734ab02295c 324 SUPERFAMILY SSF53335 66 312 9.68E-9 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_05965 d098e3ac10b18ed5c95d5734ab02295c 324 Gene3D G3DSA:3.40.50.150 48 223 1.1E-49 T 11-10-2018 AMK58_05965 d098e3ac10b18ed5c95d5734ab02295c 324 Pfam PF10017 Histidine-specific methyltransferase, SAM-dependent 22 321 5.7E-111 T 11-10-2018 IPR019257 Histidine-specific methyltransferase, SAM-dependent AMK58_05965 d098e3ac10b18ed5c95d5734ab02295c 324 PIRSF PIRSF018005 2 323 1.1E-118 T 11-10-2018 IPR017804 Methyltransferase EgtD-like GO:0008168 AMK58_05965 d098e3ac10b18ed5c95d5734ab02295c 324 TIGRFAM TIGR03438 egtD_ergothio: dimethylhistidine N-methyltransferase 22 320 3.6E-124 T 11-10-2018 IPR035094 Histidine N-alpha-methyltransferase KEGG: 00340+2.1.1.44|MetaCyc: PWY-7255|MetaCyc: PWY-7550 AMK58_24665 7959c0d898866b5576465306c2bea699 386 SUPERFAMILY SSF54631 242 361 1.44E-22 T 11-10-2018 AMK58_24665 7959c0d898866b5576465306c2bea699 386 Pfam PF04982 HPP family 64 184 9.7E-38 T 11-10-2018 IPR007065 HPP AMK58_24665 7959c0d898866b5576465306c2bea699 386 Gene3D G3DSA:3.10.580.10 217 302 3.3E-10 T 11-10-2018 AMK58_24665 7959c0d898866b5576465306c2bea699 386 Gene3D G3DSA:3.10.580.10 303 373 4.5E-7 T 11-10-2018 AMK58_24665 7959c0d898866b5576465306c2bea699 386 Pfam PF00571 CBS domain 309 362 1.9E-5 T 11-10-2018 IPR000644 CBS domain AMK58_24665 7959c0d898866b5576465306c2bea699 386 Pfam PF00571 CBS domain 253 302 1.9E-6 T 11-10-2018 IPR000644 CBS domain AMK58_24665 7959c0d898866b5576465306c2bea699 386 SMART SM00116 315 363 0.3 T 11-10-2018 IPR000644 CBS domain AMK58_24665 7959c0d898866b5576465306c2bea699 386 SMART SM00116 259 307 3.4E-4 T 11-10-2018 IPR000644 CBS domain AMK58_28000 bd4ff44a527f70206d4d926910675641 482 Pfam PF06527 TniQ 13 162 3.8E-14 T 11-10-2018 IPR009492 TniQ AMK58_13980 ea658077fe32fa91e56a29fd3fceef50 144 Pfam PF00856 SET domain 48 123 2.2E-7 T 11-10-2018 IPR001214 SET domain GO:0005515 AMK58_13980 ea658077fe32fa91e56a29fd3fceef50 144 SUPERFAMILY SSF82199 11 125 1.02E-13 T 11-10-2018 AMK58_13980 ea658077fe32fa91e56a29fd3fceef50 144 Gene3D G3DSA:2.170.270.10 13 133 2.2E-11 T 11-10-2018 AMK58_21925 7a7a79c1f3dda699a09ed1bd6fa821c7 409 SUPERFAMILY SSF55031 212 326 1.05E-27 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain AMK58_21925 7a7a79c1f3dda699a09ed1bd6fa821c7 409 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 9 405 2.7E-127 T 11-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 AMK58_21925 7a7a79c1f3dda699a09ed1bd6fa821c7 409 SUPERFAMILY SSF53187 3 407 1.43E-96 T 11-10-2018 AMK58_21925 7a7a79c1f3dda699a09ed1bd6fa821c7 409 Gene3D G3DSA:3.30.70.360 212 326 7.9E-154 T 11-10-2018 AMK58_21925 7a7a79c1f3dda699a09ed1bd6fa821c7 409 Pfam PF01546 Peptidase family M20/M25/M40 80 405 9.8E-36 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 AMK58_21925 7a7a79c1f3dda699a09ed1bd6fa821c7 409 Gene3D G3DSA:3.40.630.10 18 401 7.9E-154 T 11-10-2018 AMK58_21925 7a7a79c1f3dda699a09ed1bd6fa821c7 409 PIRSF PIRSF001235 3 409 2.3E-135 T 11-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 AMK58_06490 3e8eeaa0c1d5b095f9af31bb06e16003 301 Gene3D G3DSA:1.25.40.10 176 298 8.9E-27 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_06490 3e8eeaa0c1d5b095f9af31bb06e16003 301 Pfam PF13174 Tetratricopeptide repeat 252 282 7.5E-6 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_06490 3e8eeaa0c1d5b095f9af31bb06e16003 301 Pfam PF13432 Tetratricopeptide repeat 181 246 2.0E-11 T 11-10-2018 AMK58_06490 3e8eeaa0c1d5b095f9af31bb06e16003 301 SUPERFAMILY SSF48452 175 291 2.53E-14 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_06490 3e8eeaa0c1d5b095f9af31bb06e16003 301 TIGRFAM TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF 176 291 5.3E-38 T 11-10-2018 IPR014162 Cell division coordinator CpoB, C-terminal AMK58_06490 3e8eeaa0c1d5b095f9af31bb06e16003 301 Hamap MF_02066 Cell division coordinator CpoB [cpoB]. 1 296 19.118 T 11-10-2018 IPR034706 Cell division coordinator CpoB GO:0051301 AMK58_05455 5592b4df6e36410158e0758d0e10d581 265 Pfam PF00005 ABC transporter 22 177 8.3E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_05455 5592b4df6e36410158e0758d0e10d581 265 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_05455 5592b4df6e36410158e0758d0e10d581 265 SMART SM00382 31 234 1.1E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_05455 5592b4df6e36410158e0758d0e10d581 265 Gene3D G3DSA:3.40.50.300 1 242 2.0E-55 T 11-10-2018 AMK58_05455 5592b4df6e36410158e0758d0e10d581 265 SUPERFAMILY SSF52540 2 232 1.33E-50 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_00865 d8bad4f08aef93705acca63745b822d2 243 Pfam PF13189 Cytidylate kinase-like family 34 204 1.6E-31 T 11-10-2018 AMK58_00865 d8bad4f08aef93705acca63745b822d2 243 Gene3D G3DSA:3.40.50.300 30 222 1.2E-32 T 11-10-2018 AMK58_25735 84ca6b6b20aafea0741f4913573bb6cb 178 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 30 157 1.7E-12 T 11-10-2018 IPR009936 Protein of unknown function DUF1468 AMK58_20740 6bc52a752533bbf04fd03c8845b19cba 348 TIGRFAM TIGR03718 R_switched_Alx: integral membrane protein, TerC family 5 302 6.1E-123 T 11-10-2018 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 AMK58_20740 6bc52a752533bbf04fd03c8845b19cba 348 Pfam PF03741 Integral membrane protein TerC family 69 271 3.0E-59 T 11-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 AMK58_08740 39bba7b034c4dc7c2272065dfeabec8b 230 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 22 159 2.8E-23 T 11-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ AMK58_22730 f0370437064799eba1b094842b6af6a1 330 Gene3D G3DSA:3.30.420.310 90 322 3.4E-62 T 11-10-2018 AMK58_22730 f0370437064799eba1b094842b6af6a1 330 Pfam PF05035 2-keto-3-deoxy-galactonokinase 16 317 9.7E-91 T 11-10-2018 IPR007729 2-keto-3-deoxy-galactonokinase GO:0008671|GO:0034194 KEGG: 00052+2.7.1.58|MetaCyc: PWY-7130 AMK58_22730 f0370437064799eba1b094842b6af6a1 330 Gene3D G3DSA:3.30.420.300 6 89 1.5E-24 T 11-10-2018 AMK58_05400 60173b8c9a5ff196cd993a3bad3d9e73 67 Pfam PF01165 Ribosomal protein S21 2 55 3.7E-20 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_05400 60173b8c9a5ff196cd993a3bad3d9e73 67 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 1 56 7.5E-21 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_05400 60173b8c9a5ff196cd993a3bad3d9e73 67 Gene3D G3DSA:1.20.5.1150 14 52 5.6E-9 T 11-10-2018 IPR038380 Ribosomal protein S21 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_05400 60173b8c9a5ff196cd993a3bad3d9e73 67 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 13 40 2.0E-7 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_05400 60173b8c9a5ff196cd993a3bad3d9e73 67 ProSitePatterns PS01181 Ribosomal protein S21 signature. 11 23 - T 11-10-2018 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMK58_05400 60173b8c9a5ff196cd993a3bad3d9e73 67 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 10 55 13.58 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_05400 60173b8c9a5ff196cd993a3bad3d9e73 67 PRINTS PR00976 Ribosomal protein S21 family signature 35 45 7.3E-5 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_05400 60173b8c9a5ff196cd993a3bad3d9e73 67 PRINTS PR00976 Ribosomal protein S21 family signature 23 33 7.3E-5 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_05400 60173b8c9a5ff196cd993a3bad3d9e73 67 PRINTS PR00976 Ribosomal protein S21 family signature 11 20 7.3E-5 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMK58_13035 1a1600df4e685b4351efb8751e7d6a3e 520 SUPERFAMILY SSF52540 9 254 1.55E-26 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_13035 1a1600df4e685b4351efb8751e7d6a3e 520 Gene3D G3DSA:3.40.50.300 29 249 1.2E-36 T 11-10-2018 AMK58_13035 1a1600df4e685b4351efb8751e7d6a3e 520 Pfam PF01935 Domain of unknown function DUF87 14 80 1.3E-7 T 11-10-2018 IPR002789 Helicase HerA, central domain AMK58_13035 1a1600df4e685b4351efb8751e7d6a3e 520 PIRSF PIRSF034081 1 514 9.0E-239 T 11-10-2018 IPR014588 ATPase, Atu1862 type, predicted AMK58_04280 911ad4c4a492a24cbfa273cebfc4de12 459 SUPERFAMILY SSF56601 51 309 2.64E-74 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMK58_04280 911ad4c4a492a24cbfa273cebfc4de12 459 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 71 291 9.9E-57 T 11-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 AMK58_04280 911ad4c4a492a24cbfa273cebfc4de12 459 Gene3D G3DSA:3.40.710.10 55 331 7.4E-80 T 11-10-2018 AMK58_04280 911ad4c4a492a24cbfa273cebfc4de12 459 Pfam PF05036 Sporulation related domain 375 452 1.3E-7 T 11-10-2018 IPR007730 Sporulation-like domain GO:0042834 AMK58_04280 911ad4c4a492a24cbfa273cebfc4de12 459 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 178 191 1.6E-12 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMK58_04280 911ad4c4a492a24cbfa273cebfc4de12 459 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 98 109 1.6E-12 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMK58_04280 911ad4c4a492a24cbfa273cebfc4de12 459 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 151 168 1.6E-12 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMK58_08800 8fc3f68fc6e4da01cc8d6a3971564a61 293 Gene3D G3DSA:3.20.20.220 1 291 7.9E-109 T 11-10-2018 AMK58_08800 8fc3f68fc6e4da01cc8d6a3971564a61 293 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 8 283 7.1E-108 T 11-10-2018 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841 AMK58_08800 8fc3f68fc6e4da01cc8d6a3971564a61 293 Pfam PF02219 Methylenetetrahydrofolate reductase 5 284 9.7E-99 T 11-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 AMK58_08800 8fc3f68fc6e4da01cc8d6a3971564a61 293 SUPERFAMILY SSF51730 6 285 9.22E-100 T 11-10-2018 IPR029041 FAD-linked oxidoreductase-like AMK58_07535 ba3551dc14ab7c1a50a324a7da5065ce 399 PIRSF PIRSF010256 1 383 3.3E-131 T 11-10-2018 IPR011195 Uncharacterised conserved protein UCP010256 AMK58_07535 ba3551dc14ab7c1a50a324a7da5065ce 399 SUPERFAMILY SSF53300 209 340 3.81E-20 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMK58_07535 ba3551dc14ab7c1a50a324a7da5065ce 399 Gene3D G3DSA:3.40.50.410 211 335 3.0E-9 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMK58_07535 ba3551dc14ab7c1a50a324a7da5065ce 399 Pfam PF05762 VWA domain containing CoxE-like protein 154 373 1.8E-77 T 11-10-2018 IPR008912 Uncharacterised protein family CoxE-like AMK58_07535 ba3551dc14ab7c1a50a324a7da5065ce 399 SMART SM00327 209 366 1.0E-4 T 11-10-2018 IPR002035 von Willebrand factor, type A AMK58_24275 9cabfed2fb6d50d6fdaefa1f8fd06178 569 Hamap MF_00275 Potassium-transporting ATPase potassium-binding subunit [kdpA]. 2 563 36.263 T 11-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 AMK58_24275 9cabfed2fb6d50d6fdaefa1f8fd06178 569 Pfam PF03814 Potassium-transporting ATPase A subunit 11 561 5.0E-247 T 11-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 AMK58_24275 9cabfed2fb6d50d6fdaefa1f8fd06178 569 TIGRFAM TIGR00680 kdpA: K+-transporting ATPase, A subunit 1 562 4.4E-238 T 11-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 AMK58_24275 9cabfed2fb6d50d6fdaefa1f8fd06178 569 PIRSF PIRSF001294 1 565 8.1E-242 T 11-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 AMK58_21945 732bee7c6ab43d1caf37dd4036c5d867 326 SUPERFAMILY SSF161098 95 310 5.76E-22 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_21945 732bee7c6ab43d1caf37dd4036c5d867 326 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 118 323 2.8E-44 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_21945 732bee7c6ab43d1caf37dd4036c5d867 326 Gene3D G3DSA:1.10.3720.10 90 318 3.7E-26 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_25985 3c05920a77cfad35a679d72ba19f23b6 345 Pfam PF02653 Branched-chain amino acid transport system / permease component 25 310 3.1E-45 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_22575 f533bb1202ba599c0b19479d78250290 292 Gene3D G3DSA:3.30.930.10 1 291 6.8E-90 T 11-10-2018 AMK58_22575 f533bb1202ba599c0b19479d78250290 292 SUPERFAMILY SSF55681 7 290 6.63E-22 T 11-10-2018 AMK58_14850 9af440120c612efc6c5aef8102f4a768 110 Pfam PF07372 Protein of unknown function (DUF1491) 5 106 1.5E-33 T 11-10-2018 IPR009964 Protein of unknown function DUF1491 AMK58_14850 9af440120c612efc6c5aef8102f4a768 110 Gene3D G3DSA:3.40.1530.20 2 110 2.6E-29 T 11-10-2018 AMK58_08565 8ee55a03739e909ad47382aa98ee3785 259 Pfam PF00378 Enoyl-CoA hydratase/isomerase 17 257 3.4E-54 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMK58_08565 8ee55a03739e909ad47382aa98ee3785 259 Gene3D G3DSA:3.90.226.10 7 259 2.4E-76 T 11-10-2018 AMK58_08565 8ee55a03739e909ad47382aa98ee3785 259 SUPERFAMILY SSF52096 6 258 3.78E-77 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMK58_12890 6a4d461548e179f62b6d7bf6dec70191 285 SUPERFAMILY SSF103481 30 133 2.35E-15 T 11-10-2018 AMK58_12890 6a4d461548e179f62b6d7bf6dec70191 285 SUPERFAMILY SSF103481 180 282 1.44E-14 T 11-10-2018 AMK58_12890 6a4d461548e179f62b6d7bf6dec70191 285 Pfam PF00892 EamA-like transporter family 146 279 6.2E-23 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_12890 6a4d461548e179f62b6d7bf6dec70191 285 Pfam PF00892 EamA-like transporter family 2 129 1.9E-23 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_15495 86182c3973eafd1fb4d922d9f28ca2d0 183 Gene3D G3DSA:1.20.58.320 2 81 1.3E-24 T 11-10-2018 AMK58_15495 86182c3973eafd1fb4d922d9f28ca2d0 183 SUPERFAMILY SSF48452 5 179 2.5E-64 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_15495 86182c3973eafd1fb4d922d9f28ca2d0 183 Pfam PF06041 Bacterial protein of unknown function (DUF924) 9 180 7.6E-59 T 11-10-2018 IPR010323 Protein of unknown function DUF924 AMK58_15495 86182c3973eafd1fb4d922d9f28ca2d0 183 Gene3D G3DSA:1.25.40.10 82 183 2.0E-35 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_13545 9511d6006d9cf9560232f3d9483ac17f 801 Pfam PF00082 Subtilase family 284 601 1.5E-11 T 11-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMK58_13545 9511d6006d9cf9560232f3d9483ac17f 801 SUPERFAMILY SSF52743 250 643 2.36E-22 T 11-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 AMK58_00115 fb54cadd1b053c743913dba3a7f2ca79 253 Pfam PF03692 Putative zinc- or iron-chelating domain 6 112 3.8E-8 T 11-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein AMK58_15635 571631117e3a13b068b1ec167b266cc3 138 SUPERFAMILY SSF54427 3 131 1.64E-24 T 11-10-2018 IPR032710 NTF2-like domain superfamily AMK58_15635 571631117e3a13b068b1ec167b266cc3 138 Pfam PF12680 SnoaL-like domain 10 118 5.9E-15 T 11-10-2018 IPR037401 SnoaL-like domain AMK58_15635 571631117e3a13b068b1ec167b266cc3 138 Gene3D G3DSA:3.10.450.50 2 135 2.0E-27 T 11-10-2018 AMK58_28365 47b9923508f3c6cd67175270c60f1d5c 88 Gene3D G3DSA:3.10.450.530 1 86 3.2E-11 T 11-10-2018 IPR038573 Ribonuclease toxin BrnT superfamily AMK58_28365 47b9923508f3c6cd67175270c60f1d5c 88 Pfam PF04365 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 5 83 2.6E-21 T 11-10-2018 IPR007460 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system AMK58_13070 61aed110549a455c2e1a1970271d335b 234 Gene3D G3DSA:1.20.144.10 97 201 6.0E-15 T 11-10-2018 AMK58_13070 61aed110549a455c2e1a1970271d335b 234 SUPERFAMILY SSF48317 3 190 3.92E-22 T 11-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily AMK58_13070 61aed110549a455c2e1a1970271d335b 234 Pfam PF01569 PAP2 superfamily 68 181 1.1E-14 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMK58_13070 61aed110549a455c2e1a1970271d335b 234 SMART SM00014 63 179 7.9E-12 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMK58_27455 7516aaed693a949a6816f7f4febaabcb 347 Pfam PF04230 Polysaccharide pyruvyl transferase 73 324 3.1E-20 T 11-10-2018 IPR007345 Polysaccharide pyruvyl transferase AMK58_27665 91a47a4e34d1d57622142aad21d35f5c 162 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 13 148 5.1E-17 T 11-10-2018 IPR009936 Protein of unknown function DUF1468 AMK58_24850 f9b1143d58c7ed181f476f8062d8f604 354 Pfam PF01734 Patatin-like phospholipase 24 220 3.6E-18 T 11-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 AMK58_24850 f9b1143d58c7ed181f476f8062d8f604 354 SUPERFAMILY SSF52151 21 341 1.2E-50 T 11-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase AMK58_24850 f9b1143d58c7ed181f476f8062d8f604 354 Gene3D G3DSA:3.40.1090.10 7 136 7.1E-14 T 11-10-2018 AMK58_24850 f9b1143d58c7ed181f476f8062d8f604 354 Gene3D G3DSA:3.40.1090.10 137 281 9.5E-13 T 11-10-2018 AMK58_11835 d3a06f4d1d999fc6fef1b7e5485f2fa5 254 Hamap MF_00560 Trans-aconitate 2-methyltransferase [tam]. 1 254 41.122 T 11-10-2018 IPR023506 Trans-aconitate 2-methyltransferase GO:0030798 AMK58_11835 d3a06f4d1d999fc6fef1b7e5485f2fa5 254 Gene3D G3DSA:3.40.50.150 8 252 2.3E-87 T 11-10-2018 AMK58_11835 d3a06f4d1d999fc6fef1b7e5485f2fa5 254 Gene3D G3DSA:1.10.150.290 131 235 2.3E-87 T 11-10-2018 IPR023149 Trans-aconitate 2-methyltransferase, C-terminal GO:0030798 AMK58_11835 d3a06f4d1d999fc6fef1b7e5485f2fa5 254 SUPERFAMILY SSF53335 3 191 7.21E-34 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_11835 d3a06f4d1d999fc6fef1b7e5485f2fa5 254 Pfam PF13649 Methyltransferase domain 34 123 1.8E-17 T 11-10-2018 AMK58_20590 cf7df53cd83d5682073b87224b692297 335 Pfam PF02540 NAD synthase 172 306 5.0E-28 T 11-10-2018 IPR022310 NAD/GMP synthase AMK58_20590 cf7df53cd83d5682073b87224b692297 335 Pfam PF02540 NAD synthase 22 105 2.6E-18 T 11-10-2018 IPR022310 NAD/GMP synthase AMK58_20590 cf7df53cd83d5682073b87224b692297 335 Hamap MF_00193 NH(3)-dependent NAD(+) synthetase [nadE]. 16 318 50.186 T 11-10-2018 IPR022926 NH(3)-dependent NAD(+) synthetase GO:0008795|GO:0009435 KEGG: 00760+6.3.1.5 AMK58_20590 cf7df53cd83d5682073b87224b692297 335 SUPERFAMILY SSF52402 6 281 2.19E-50 T 11-10-2018 AMK58_20590 cf7df53cd83d5682073b87224b692297 335 TIGRFAM TIGR00552 nadE: NAD+ synthetase 129 313 4.7E-30 T 11-10-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 AMK58_12140 7367a4e683073ac7d161bce46d9f011c 395 Gene3D G3DSA:3.40.50.11550 50 275 1.6E-27 T 11-10-2018 AMK58_12140 7367a4e683073ac7d161bce46d9f011c 395 SMART SM00228 309 379 7.7E-9 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMK58_12140 7367a4e683073ac7d161bce46d9f011c 395 Gene3D G3DSA:2.30.42.10 300 390 1.4E-15 T 11-10-2018 AMK58_12140 7367a4e683073ac7d161bce46d9f011c 395 Pfam PF04187 Haem-binding uptake, Tiki superfamily, ChaN 57 263 1.0E-64 T 11-10-2018 IPR007314 Haem-binding uptake, Tiki superfamily, ChaN AMK58_12140 7367a4e683073ac7d161bce46d9f011c 395 Pfam PF13180 PDZ domain 309 383 6.7E-10 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMK58_12140 7367a4e683073ac7d161bce46d9f011c 395 SUPERFAMILY SSF50156 308 385 4.47E-15 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 AMK58_12140 7367a4e683073ac7d161bce46d9f011c 395 Gene3D G3DSA:1.10.8.760 162 227 1.6E-27 T 11-10-2018 AMK58_12140 7367a4e683073ac7d161bce46d9f011c 395 SUPERFAMILY SSF159501 39 295 6.8E-68 T 11-10-2018 AMK58_20980 228f6d8e2ba2e8b5be19cb08d5ee9960 219 Pfam PF03006 Haemolysin-III related 21 209 1.1E-22 T 11-10-2018 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 AMK58_03300 fd279c603b1f1cb2b64b76fe1a22db0c 457 Pfam PF01566 Natural resistance-associated macrophage protein 57 411 2.2E-17 T 11-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 AMK58_18465 bba884cd42d1bedd5778fa49faeaa740 236 SUPERFAMILY SSF56300 5 228 1.21E-46 T 11-10-2018 AMK58_18465 bba884cd42d1bedd5778fa49faeaa740 236 Gene3D G3DSA:3.60.21.10 3 233 1.0E-59 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like AMK58_18465 bba884cd42d1bedd5778fa49faeaa740 236 Pfam PF00149 Calcineurin-like phosphoesterase 6 195 1.6E-11 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AMK58_18150 9f44781fecff6135fdc24be07933540c 254 Pfam PF08241 Methyltransferase domain 48 144 6.0E-23 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 AMK58_18150 9f44781fecff6135fdc24be07933540c 254 Gene3D G3DSA:3.40.50.150 24 242 3.6E-57 T 11-10-2018 AMK58_18150 9f44781fecff6135fdc24be07933540c 254 SUPERFAMILY SSF53335 12 242 6.81E-46 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_01445 190fedd15745e3dc7baf5bd49a67a343 64 Pfam PF06568 Domain of unknown function (DUF1127) 19 54 5.5E-13 T 11-10-2018 IPR009506 Protein of unknown function DUF1127 AMK58_19590 0d449ee9e53b6a27fcd599b66ca60e8c 128 SUPERFAMILY SSF46626 24 124 4.66E-28 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_19590 0d449ee9e53b6a27fcd599b66ca60e8c 128 Pfam PF00034 Cytochrome c 28 124 9.6E-8 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_19590 0d449ee9e53b6a27fcd599b66ca60e8c 128 PRINTS PR00604 Class IA and IB cytochrome C signature 49 64 1.8E-12 T 11-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_19590 0d449ee9e53b6a27fcd599b66ca60e8c 128 PRINTS PR00604 Class IA and IB cytochrome C signature 99 109 1.8E-12 T 11-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_19590 0d449ee9e53b6a27fcd599b66ca60e8c 128 PRINTS PR00604 Class IA and IB cytochrome C signature 36 43 1.8E-12 T 11-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_19590 0d449ee9e53b6a27fcd599b66ca60e8c 128 PRINTS PR00604 Class IA and IB cytochrome C signature 65 75 1.8E-12 T 11-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_19590 0d449ee9e53b6a27fcd599b66ca60e8c 128 PRINTS PR00604 Class IA and IB cytochrome C signature 116 124 1.8E-12 T 11-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_19590 0d449ee9e53b6a27fcd599b66ca60e8c 128 PRINTS PR00604 Class IA and IB cytochrome C signature 79 95 1.8E-12 T 11-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_19590 0d449ee9e53b6a27fcd599b66ca60e8c 128 Gene3D G3DSA:1.10.760.10 15 125 1.8E-31 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMK58_23265 cf20791523fe6b5ba0979311c6492113 275 SUPERFAMILY SSF52402 150 273 2.26E-12 T 11-10-2018 AMK58_23265 cf20791523fe6b5ba0979311c6492113 275 Pfam PF00582 Universal stress protein family 152 273 7.4E-6 T 11-10-2018 IPR006016 UspA AMK58_23265 cf20791523fe6b5ba0979311c6492113 275 Pfam PF00582 Universal stress protein family 3 138 2.2E-8 T 11-10-2018 IPR006016 UspA AMK58_23265 cf20791523fe6b5ba0979311c6492113 275 Gene3D G3DSA:3.40.50.12370 5 274 5.3E-34 T 11-10-2018 AMK58_23265 cf20791523fe6b5ba0979311c6492113 275 SUPERFAMILY SSF52402 1 138 1.17E-13 T 11-10-2018 AMK58_10165 056bd058e26b07114c02d3a0a45136f0 138 Pfam PF10768 Class II flagellar assembly regulator 1 136 2.9E-40 T 11-10-2018 IPR019704 Flagellar assembly regulator FliX, class II GO:0044781 AMK58_23155 43ebdbba3a5cdaf078ca4efa1885657f 541 Pfam PF03929 PepSY-associated TM region 12 371 4.2E-55 T 11-10-2018 IPR005625 PepSY-associated TM protein AMK58_26070 f886e44d0d8b08d29015c723e66c3242 206 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 30 160 4.0E-23 T 11-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ AMK58_20435 dc0a63831c07e025343218a0c6a125fc 435 SUPERFAMILY SSF53720 28 429 2.94E-82 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMK58_20435 dc0a63831c07e025343218a0c6a125fc 435 Gene3D G3DSA:3.40.50.1980 234 351 1.7E-124 T 11-10-2018 AMK58_20435 dc0a63831c07e025343218a0c6a125fc 435 Gene3D G3DSA:3.40.50.1980 31 233 1.7E-124 T 11-10-2018 AMK58_20435 dc0a63831c07e025343218a0c6a125fc 435 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 230 262 - T 11-10-2018 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 AMK58_20435 dc0a63831c07e025343218a0c6a125fc 435 PRINTS PR00083 Histidinol dehydrogenase signature 34 58 3.8E-83 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMK58_20435 dc0a63831c07e025343218a0c6a125fc 435 PRINTS PR00083 Histidinol dehydrogenase signature 322 347 3.8E-83 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMK58_20435 dc0a63831c07e025343218a0c6a125fc 435 PRINTS PR00083 Histidinol dehydrogenase signature 252 271 3.8E-83 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMK58_20435 dc0a63831c07e025343218a0c6a125fc 435 PRINTS PR00083 Histidinol dehydrogenase signature 201 226 3.8E-83 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMK58_20435 dc0a63831c07e025343218a0c6a125fc 435 PRINTS PR00083 Histidinol dehydrogenase signature 171 197 3.8E-83 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMK58_20435 dc0a63831c07e025343218a0c6a125fc 435 PRINTS PR00083 Histidinol dehydrogenase signature 363 381 3.8E-83 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMK58_20435 dc0a63831c07e025343218a0c6a125fc 435 PRINTS PR00083 Histidinol dehydrogenase signature 137 163 3.8E-83 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMK58_20435 dc0a63831c07e025343218a0c6a125fc 435 PRINTS PR00083 Histidinol dehydrogenase signature 230 251 3.8E-83 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMK58_20435 dc0a63831c07e025343218a0c6a125fc 435 PIRSF PIRSF000099 6 430 4.2E-160 T 11-10-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMK58_20435 dc0a63831c07e025343218a0c6a125fc 435 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 34 428 1.7E-159 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMK58_20435 dc0a63831c07e025343218a0c6a125fc 435 Pfam PF00815 Histidinol dehydrogenase 23 429 2.0E-167 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMK58_20435 dc0a63831c07e025343218a0c6a125fc 435 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 3 429 41.28 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMK58_26255 4e1f9eca002d2fb8151f4e05409d049e 256 SUPERFAMILY SSF53955 52 179 2.44E-9 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily AMK58_16225 ad2a5084cc982a7ccc78bc4d3f410e64 206 Gene3D G3DSA:1.20.120.80 11 206 4.7E-53 T 11-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_16225 ad2a5084cc982a7ccc78bc4d3f410e64 206 Pfam PF00510 Cytochrome c oxidase subunit III 15 203 4.3E-15 T 11-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_16225 ad2a5084cc982a7ccc78bc4d3f410e64 206 SUPERFAMILY SSF81452 16 204 1.7E-44 T 11-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_24680 c75454e73807563f4b1d778f405d0756 328 SUPERFAMILY SSF51430 12 317 2.62E-66 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMK58_24680 c75454e73807563f4b1d778f405d0756 328 Pfam PF00248 Aldo/keto reductase family 12 316 1.8E-50 T 11-10-2018 IPR023210 NADP-dependent oxidoreductase domain AMK58_24680 c75454e73807563f4b1d778f405d0756 328 Gene3D G3DSA:3.20.20.100 11 318 7.5E-66 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMK58_22925 b9c4730f2b58baf169e6049d79d36302 241 SUPERFAMILY SSF50475 9 189 2.81E-57 T 11-10-2018 AMK58_22925 b9c4730f2b58baf169e6049d79d36302 241 Gene3D G3DSA:2.30.110.10 11 227 1.7E-67 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 AMK58_22925 b9c4730f2b58baf169e6049d79d36302 241 Pfam PF12900 Pyridoxamine 5'-phosphate oxidase 28 171 4.3E-44 T 11-10-2018 IPR024747 Pyridoxamine 5'-phosphate oxidase-related AMK58_06680 cd18b861e76ec525966160b31f515668 104 SUPERFAMILY SSF54913 2 103 7.41E-36 T 11-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta AMK58_06680 cd18b861e76ec525966160b31f515668 104 Pfam PF03091 CutA1 divalent ion tolerance protein 5 101 1.2E-36 T 11-10-2018 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 AMK58_06680 cd18b861e76ec525966160b31f515668 104 Gene3D G3DSA:3.30.70.120 1 104 1.6E-40 T 11-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal AMK58_07565 cc71d30d39920562f87dbe3a9a2a0828 698 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 414 618 5.6E-29 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit AMK58_07565 cc71d30d39920562f87dbe3a9a2a0828 698 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 131 396 8.2E-58 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit AMK58_07565 cc71d30d39920562f87dbe3a9a2a0828 698 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 33 690 8.4E-220 T 11-10-2018 IPR011853 TRAP C4-dicarboxylate transport system permease, fused DctM-DctQ AMK58_11680 42ba8484a34bf7ea2dbd4d4343d64749 247 Pfam PF01925 Sulfite exporter TauE/SafE 7 241 3.1E-40 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 AMK58_24455 44701a35bb1168794af79f9283cf9995 196 Gene3D G3DSA:3.40.1410.10 48 191 4.6E-11 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily AMK58_24455 44701a35bb1168794af79f9283cf9995 196 SUPERFAMILY SSF64288 49 186 6.28E-13 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily AMK58_05725 09274f6c20d9a560b3b5baa04cd1e4c6 372 Pfam PF05940 NnrS protein 14 366 1.5E-63 T 11-10-2018 IPR010266 NnrS AMK58_00340 0291ee2affd965f395ac92a5d57b97dd 340 Gene3D G3DSA:1.10.8.60 143 212 1.6E-7 T 11-10-2018 AMK58_00340 0291ee2affd965f395ac92a5d57b97dd 340 SUPERFAMILY SSF52540 16 210 5.31E-10 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_00340 0291ee2affd965f395ac92a5d57b97dd 340 Gene3D G3DSA:1.20.272.10 219 338 2.8E-14 T 11-10-2018 AMK58_00340 0291ee2affd965f395ac92a5d57b97dd 340 Gene3D G3DSA:3.40.50.300 19 134 2.0E-8 T 11-10-2018 AMK58_00340 0291ee2affd965f395ac92a5d57b97dd 340 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 21 333 8.1E-51 T 11-10-2018 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 AMK58_00340 0291ee2affd965f395ac92a5d57b97dd 340 SUPERFAMILY SSF48019 221 335 5.27E-18 T 11-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 AMK58_15875 48fef7466662ef6926a58a2b6bd47258 342 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 9 337 5.3E-122 T 11-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 AMK58_15875 48fef7466662ef6926a58a2b6bd47258 342 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 7 340 37.062 T 11-10-2018 IPR037510 4-hydroxythreonine-4-phosphate dehydrogenase GO:0042823|GO:0050570 KEGG: 00750+1.1.1.262 AMK58_15875 48fef7466662ef6926a58a2b6bd47258 342 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 54 333 3.4E-101 T 11-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 AMK58_15875 48fef7466662ef6926a58a2b6bd47258 342 Gene3D G3DSA:3.40.718.10 7 341 1.0E-119 T 11-10-2018 AMK58_15875 48fef7466662ef6926a58a2b6bd47258 342 SUPERFAMILY SSF53659 8 340 5.91E-108 T 11-10-2018 AMK58_27115 4cafa541edbf95c163505cff9eaa47e8 147 Pfam PF03061 Thioesterase superfamily 55 130 2.9E-11 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AMK58_27115 4cafa541edbf95c163505cff9eaa47e8 147 SUPERFAMILY SSF54637 10 141 2.56E-29 T 11-10-2018 IPR029069 HotDog domain superfamily AMK58_27115 4cafa541edbf95c163505cff9eaa47e8 147 Gene3D G3DSA:3.10.129.10 6 143 1.1E-32 T 11-10-2018 AMK58_27115 4cafa541edbf95c163505cff9eaa47e8 147 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 25 124 3.0E-19 T 11-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 AMK58_03665 66aec19cf997e0276bf4d7c7858a26b7 138 Pfam PF00570 HRDC domain 67 129 1.3E-9 T 11-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 AMK58_03665 66aec19cf997e0276bf4d7c7858a26b7 138 SUPERFAMILY SSF47819 63 133 2.62E-12 T 11-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 AMK58_03665 66aec19cf997e0276bf4d7c7858a26b7 138 Gene3D G3DSA:1.10.150.80 47 136 9.4E-11 T 11-10-2018 AMK58_03060 703523f3190f4ef487b41e03425ce5c4 249 SUPERFAMILY SSF53474 7 241 1.36E-40 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_03060 703523f3190f4ef487b41e03425ce5c4 249 Gene3D G3DSA:3.40.50.1820 2 246 1.1E-65 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_03060 703523f3190f4ef487b41e03425ce5c4 249 Pfam PF12146 Serine aminopeptidase, S33 45 132 2.9E-10 T 11-10-2018 IPR022742 Serine aminopeptidase, S33 AMK58_03900 4d636a11a87dbdecab1ae46ecfa1dd65 320 Pfam PF03799 Cell division protein FtsQ 171 290 6.0E-19 T 11-10-2018 IPR005548 Cell division protein FtsQ/DivIB AMK58_03900 4d636a11a87dbdecab1ae46ecfa1dd65 320 Pfam PF08478 POTRA domain, FtsQ-type 99 167 2.4E-17 T 11-10-2018 IPR013685 POTRA domain, FtsQ-type AMK58_03900 4d636a11a87dbdecab1ae46ecfa1dd65 320 Gene3D G3DSA:3.10.20.310 98 166 1.0E-7 T 11-10-2018 AMK58_03900 4d636a11a87dbdecab1ae46ecfa1dd65 320 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 73 308 19.27 T 11-10-2018 IPR026579 Cell division protein FtsQ GO:0090529 AMK58_24225 1e71d465eb3fb647fdc6bb91f86b5b22 234 SUPERFAMILY SSF55469 13 231 2.88E-50 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AMK58_24225 1e71d465eb3fb647fdc6bb91f86b5b22 234 Gene3D G3DSA:3.40.109.10 2 229 6.4E-70 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AMK58_24225 1e71d465eb3fb647fdc6bb91f86b5b22 234 Pfam PF00881 Nitroreductase family 17 208 7.7E-38 T 11-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 AMK58_21840 dae6674a0f757f8ca6553d8554087af3 240 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 26 235 5.0E-65 T 11-10-2018 IPR006214 Bax inhibitor 1-related AMK58_26810 8166ec5f835b497545c929b7c812942e 411 Gene3D G3DSA:1.20.1250.20 211 401 1.0E-19 T 11-10-2018 AMK58_26810 8166ec5f835b497545c929b7c812942e 411 SUPERFAMILY SSF103473 5 399 1.83E-53 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_26810 8166ec5f835b497545c929b7c812942e 411 Gene3D G3DSA:1.20.1250.20 8 194 3.3E-19 T 11-10-2018 AMK58_26810 8166ec5f835b497545c929b7c812942e 411 Pfam PF07690 Major Facilitator Superfamily 22 362 2.9E-28 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMK58_26670 7470e0d1fb6272542252bf4eb81e2e77 339 Gene3D G3DSA:3.40.50.2300 40 293 4.2E-66 T 11-10-2018 AMK58_26670 7470e0d1fb6272542252bf4eb81e2e77 339 Gene3D G3DSA:3.40.50.2300 140 328 4.2E-66 T 11-10-2018 AMK58_26670 7470e0d1fb6272542252bf4eb81e2e77 339 Pfam PF02608 ABC transporter substrate-binding protein PnrA-like 54 271 3.9E-37 T 11-10-2018 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 AMK58_17485 ccea3af9538f2a76a5695821301bb4b4 211 Pfam PF01810 LysE type translocator 17 205 7.1E-30 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMK58_24295 949cfc760fde550256164da388fd549b 217 SUPERFAMILY SSF52499 18 211 5.23E-47 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 AMK58_24295 949cfc760fde550256164da388fd549b 217 Pfam PF00857 Isochorismatase family 27 201 1.2E-32 T 11-10-2018 IPR000868 Isochorismatase-like GO:0003824 AMK58_24295 949cfc760fde550256164da388fd549b 217 Gene3D G3DSA:3.40.50.850 10 213 1.9E-63 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 AMK58_27360 0bedcfcfe9e65909059c2c4d1e61d8dc 325 Pfam PF02653 Branched-chain amino acid transport system / permease component 37 304 6.6E-44 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_02605 208acf2c2f370ab0ae8e94e687ea2e26 228 Hamap MF_00766 Biosynthetic peptidoglycan transglycosylase [mtgA]. 7 221 41.662 T 11-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMK58_02605 208acf2c2f370ab0ae8e94e687ea2e26 228 SUPERFAMILY SSF53955 49 217 6.19E-57 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily AMK58_02605 208acf2c2f370ab0ae8e94e687ea2e26 228 TIGRFAM TIGR02070 mono_pep_trsgly: monofunctional biosynthetic peptidoglycan transglycosylase 7 221 5.2E-81 T 11-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMK58_02605 208acf2c2f370ab0ae8e94e687ea2e26 228 Pfam PF00912 Transglycosylase 52 215 6.8E-49 T 11-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMK58_02605 208acf2c2f370ab0ae8e94e687ea2e26 228 Gene3D G3DSA:1.10.3810.10 48 220 4.7E-50 T 11-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMK58_13895 a483d34258451b9b96be1caeca651ecb 273 Pfam PF08241 Methyltransferase domain 134 181 4.0E-16 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 AMK58_13895 a483d34258451b9b96be1caeca651ecb 273 SUPERFAMILY SSF53335 134 235 1.47E-22 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_13895 a483d34258451b9b96be1caeca651ecb 273 Gene3D G3DSA:3.40.50.150 110 252 3.0E-25 T 11-10-2018 AMK58_04880 ab428a9ba7d0c0a27cc376e6a8d70c7b 1210 Pfam PF13116 Protein of unknown function 526 793 1.8E-23 T 11-10-2018 IPR025263 Domain of unknown function DUF3971 AMK58_04880 ab428a9ba7d0c0a27cc376e6a8d70c7b 1210 Pfam PF13502 AsmA-like C-terminal region 964 1172 2.2E-12 T 11-10-2018 IPR032712 AsmA-like, C-terminal AMK58_10635 b8ebcb1e91afe25bbd21475b6058c8c5 225 Gene3D G3DSA:1.10.357.10 29 225 3.9E-59 T 11-10-2018 AMK58_10635 b8ebcb1e91afe25bbd21475b6058c8c5 225 Pfam PF00440 Bacterial regulatory proteins, tetR family 33 79 4.3E-11 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_10635 b8ebcb1e91afe25bbd21475b6058c8c5 225 Pfam PF14514 Transcriptional regulator, TetR, C-terminal 103 222 2.5E-6 T 11-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMK58_10635 b8ebcb1e91afe25bbd21475b6058c8c5 225 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 54 77 6.5E-7 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_10635 b8ebcb1e91afe25bbd21475b6058c8c5 225 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 46 6.5E-7 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMK58_10635 b8ebcb1e91afe25bbd21475b6058c8c5 225 SUPERFAMILY SSF48498 99 224 2.25E-35 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMK58_10635 b8ebcb1e91afe25bbd21475b6058c8c5 225 SUPERFAMILY SSF46689 21 101 1.44E-18 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_00460 067b5e3d54df16158f510edfff2836d6 204 Pfam PF04186 FxsA cytoplasmic membrane protein 6 111 3.8E-33 T 11-10-2018 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 AMK58_03385 48070afcfc6b6cc0ef24541e00908179 242 Pfam PF02308 MgtC family 23 155 1.5E-31 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 AMK58_03385 48070afcfc6b6cc0ef24541e00908179 242 PRINTS PR01837 MgtC/SapB protein signature 26 45 9.9E-38 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 AMK58_03385 48070afcfc6b6cc0ef24541e00908179 242 PRINTS PR01837 MgtC/SapB protein signature 45 63 9.9E-38 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 AMK58_03385 48070afcfc6b6cc0ef24541e00908179 242 PRINTS PR01837 MgtC/SapB protein signature 82 104 9.9E-38 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 AMK58_03385 48070afcfc6b6cc0ef24541e00908179 242 PRINTS PR01837 MgtC/SapB protein signature 109 133 9.9E-38 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 AMK58_22045 fc9bb08d453e71e75734c5f20703c9f1 176 Gene3D G3DSA:3.40.50.12740 41 173 6.0E-6 T 11-10-2018 AMK58_22045 fc9bb08d453e71e75734c5f20703c9f1 176 SUPERFAMILY SSF52172 40 162 2.98E-7 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_13410 d53b726e47957819183dbfd01d9dbc51 144 SUPERFAMILY SSF48295 8 61 4.6E-10 T 11-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMK58_13410 d53b726e47957819183dbfd01d9dbc51 144 Pfam PF01527 Transposase 13 80 5.3E-16 T 11-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMK58_18640 208c6d2b757e9d121c25341517ea3ae8 269 Pfam PF04116 Fatty acid hydroxylase superfamily 66 222 1.5E-10 T 11-10-2018 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0008610|GO:0016491|GO:0055114 AMK58_28300 7f1b4ddb7b7750c3930fb76678a4740d 277 SUPERFAMILY SSF55729 132 265 1.19E-11 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_28300 7f1b4ddb7b7750c3930fb76678a4740d 277 Gene3D G3DSA:3.40.630.30 127 275 2.0E-10 T 11-10-2018 AMK58_21875 6b16548d41e0d6cd503f7ff99169f62c 435 Gene3D G3DSA:3.40.50.10840 7 262 1.3E-64 T 11-10-2018 IPR037051 Four-carbon acid sugar kinase, N-terminal domain superfamily AMK58_21875 6b16548d41e0d6cd503f7ff99169f62c 435 Pfam PF07005 Putative sugar-binding N-terminal domain 10 251 1.8E-47 T 11-10-2018 IPR010737 Four-carbon acid sugar kinase, N-terminal domain AMK58_21875 6b16548d41e0d6cd503f7ff99169f62c 435 Pfam PF17042 Putative nucleotide-binding of sugar-metabolising enzyme 275 428 5.3E-28 T 11-10-2018 IPR031475 Four-carbon acid sugar kinase, C-terminal domain AMK58_21875 6b16548d41e0d6cd503f7ff99169f62c 435 Gene3D G3DSA:3.40.980.20 263 434 4.8E-34 T 11-10-2018 AMK58_21875 6b16548d41e0d6cd503f7ff99169f62c 435 SUPERFAMILY SSF142764 10 432 1.57E-84 T 11-10-2018 AMK58_12690 1f33efb542ef6774ab350b019a4efaf8 171 Pfam PF00011 Hsp20/alpha crystallin family 56 146 9.5E-17 T 11-10-2018 IPR002068 Alpha crystallin/Hsp20 domain AMK58_12690 1f33efb542ef6774ab350b019a4efaf8 171 SUPERFAMILY SSF49764 43 147 1.92E-19 T 11-10-2018 IPR008978 HSP20-like chaperone AMK58_12690 1f33efb542ef6774ab350b019a4efaf8 171 Gene3D G3DSA:2.60.40.790 45 148 3.7E-20 T 11-10-2018 IPR008978 HSP20-like chaperone AMK58_18835 06914900d180b152fc3245041f7b802b 489 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 13 485 3.0E-211 T 11-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath AMK58_18835 06914900d180b152fc3245041f7b802b 489 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 64 485 9.6E-194 T 11-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath AMK58_12410 6b228cd81e6d0893e318dbf5506ae852 500 Gene3D G3DSA:3.40.50.620 191 324 1.2E-5 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMK58_12410 6b228cd81e6d0893e318dbf5506ae852 500 SUPERFAMILY SSF52402 191 291 1.5E-7 T 11-10-2018 AMK58_19330 182d7f7186a419f0508c767d2b426c20 240 Pfam PF02397 Bacterial sugar transferase 44 234 6.3E-61 T 11-10-2018 IPR003362 Bacterial sugar transferase AMK58_29040 93e7005e3667f07ef712d3a87e668112 371 SUPERFAMILY SSF53756 3 367 1.08E-64 T 11-10-2018 AMK58_29040 93e7005e3667f07ef712d3a87e668112 371 Pfam PF13439 Glycosyltransferase Family 4 16 177 4.7E-18 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AMK58_29040 93e7005e3667f07ef712d3a87e668112 371 Pfam PF00534 Glycosyl transferases group 1 191 347 2.2E-21 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 AMK58_29040 93e7005e3667f07ef712d3a87e668112 371 Gene3D G3DSA:3.40.50.2000 176 348 1.4E-56 T 11-10-2018 AMK58_29040 93e7005e3667f07ef712d3a87e668112 371 Gene3D G3DSA:3.40.50.2000 15 364 1.4E-56 T 11-10-2018 AMK58_10750 94103f0898835f5f129bb4be216c8550 454 PIRSF PIRSF017901 1 454 1.6E-192 T 11-10-2018 IPR035434 Glutamate--cysteine ligase, bacteria and plant GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AMK58_10750 94103f0898835f5f129bb4be216c8550 454 TIGRFAM TIGR01436 glu_cys_lig_pln: glutamate--cysteine ligase 11 454 4.4E-224 T 11-10-2018 IPR011556 Glutamate--cysteine ligase, plant-type GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AMK58_10750 94103f0898835f5f129bb4be216c8550 454 Gene3D G3DSA:3.30.590.20 6 454 4.5E-188 T 11-10-2018 AMK58_10750 94103f0898835f5f129bb4be216c8550 454 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 51 358 4.7E-101 T 11-10-2018 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AMK58_10750 94103f0898835f5f129bb4be216c8550 454 SUPERFAMILY SSF55931 25 452 4.12E-71 T 11-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 AMK58_22165 821796b08acc82a4c9dd3a3fc91fee1c 268 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 249 1.2E-22 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_22165 821796b08acc82a4c9dd3a3fc91fee1c 268 Gene3D G3DSA:1.10.3720.10 63 254 6.6E-26 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_22165 821796b08acc82a4c9dd3a3fc91fee1c 268 SUPERFAMILY SSF161098 62 244 1.31E-31 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_03690 b39db8f4117a94a6b7b257c30192dff5 353 Pfam PF05145 Transition state regulatory protein AbrB 33 342 8.6E-87 T 11-10-2018 IPR007820 AbrB family GO:0010468|GO:0016021 AMK58_03690 b39db8f4117a94a6b7b257c30192dff5 353 PIRSF PIRSF038991 5 351 8.8E-85 T 11-10-2018 IPR007820 AbrB family GO:0010468|GO:0016021 AMK58_03690 b39db8f4117a94a6b7b257c30192dff5 353 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 189 340 6.8E-35 T 11-10-2018 IPR017516 AbrB duplication AMK58_03690 b39db8f4117a94a6b7b257c30192dff5 353 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 10 163 8.5E-33 T 11-10-2018 IPR017516 AbrB duplication AMK58_12300 958a856ff0be5be9f3b0b3c2aa64b00a 169 Gene3D G3DSA:2.30.110.10 7 168 4.8E-56 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 AMK58_12300 958a856ff0be5be9f3b0b3c2aa64b00a 169 SUPERFAMILY SSF50475 11 141 1.14E-35 T 11-10-2018 AMK58_12300 958a856ff0be5be9f3b0b3c2aa64b00a 169 Pfam PF16242 Pyridoxamine 5'-phosphate oxidase like 9 157 2.3E-50 T 11-10-2018 IPR038725 General stress protein, FMN-binding split barrel domain AMK58_01435 13262c43f1a715c65a7a826eb9c01a5c 239 Pfam PF01578 Cytochrome C assembly protein 8 180 1.3E-30 T 11-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 AMK58_01435 13262c43f1a715c65a7a826eb9c01a5c 239 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 96 116 1.6E-60 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMK58_01435 13262c43f1a715c65a7a826eb9c01a5c 239 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 117 137 1.6E-60 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMK58_01435 13262c43f1a715c65a7a826eb9c01a5c 239 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 152 178 1.6E-60 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMK58_01435 13262c43f1a715c65a7a826eb9c01a5c 239 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 200 224 1.6E-60 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMK58_01435 13262c43f1a715c65a7a826eb9c01a5c 239 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 41 58 1.6E-60 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMK58_01435 13262c43f1a715c65a7a826eb9c01a5c 239 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 58 78 1.6E-60 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMK58_01435 13262c43f1a715c65a7a826eb9c01a5c 239 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 41 224 5.1E-85 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMK58_08950 3f618d2b4d32068cb964a6c8a7e22a07 74 Pfam PF06620 Protein of unknown function (DUF1150) 37 74 5.5E-6 T 11-10-2018 IPR009531 Protein of unknown function DUF1150 AMK58_22310 d1f49a440a8b4da940208acb7122a1ff 235 Gene3D G3DSA:3.20.20.70 1 233 1.2E-38 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_22310 d1f49a440a8b4da940208acb7122a1ff 235 SUPERFAMILY SSF51366 3 225 1.53E-27 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AMK58_22310 d1f49a440a8b4da940208acb7122a1ff 235 Pfam PF00977 Histidine biosynthesis protein 4 225 1.9E-19 T 11-10-2018 IPR006062 Histidine biosynthesis GO:0000105 AMK58_10060 5cdd2bcd2709a0923ad05deba252ae26 134 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 9 130 1.5E-21 T 11-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 AMK58_10060 5cdd2bcd2709a0923ad05deba252ae26 134 PIRSF PIRSF002889 1 133 2.2E-21 T 11-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 AMK58_10060 5cdd2bcd2709a0923ad05deba252ae26 134 Pfam PF00460 Flagella basal body rod protein 22 39 8.1E-7 T 11-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 AMK58_02165 38dc02ba2fd5e95c566154d9ad7965be 309 Pfam PF03547 Membrane transport protein 4 128 1.2E-11 T 11-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 AMK58_02165 38dc02ba2fd5e95c566154d9ad7965be 309 Pfam PF03547 Membrane transport protein 164 302 1.3E-13 T 11-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 AMK58_14105 9a7cd1f8efe2e3b66cce6ce6d84ee36a 254 Gene3D G3DSA:3.40.50.720 3 248 3.2E-62 T 11-10-2018 AMK58_14105 9a7cd1f8efe2e3b66cce6ce6d84ee36a 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 3.5E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_14105 9a7cd1f8efe2e3b66cce6ce6d84ee36a 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 3.5E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_14105 9a7cd1f8efe2e3b66cce6ce6d84ee36a 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 3.5E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_14105 9a7cd1f8efe2e3b66cce6ce6d84ee36a 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.5E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_14105 9a7cd1f8efe2e3b66cce6ce6d84ee36a 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 3.5E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_14105 9a7cd1f8efe2e3b66cce6ce6d84ee36a 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 3.5E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_14105 9a7cd1f8efe2e3b66cce6ce6d84ee36a 254 SUPERFAMILY SSF51735 4 233 1.0E-61 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_14105 9a7cd1f8efe2e3b66cce6ce6d84ee36a 254 Pfam PF00106 short chain dehydrogenase 8 197 4.9E-47 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMK58_14125 f38ea2163985c0d205cf30730e3052ae 98 Pfam PF12365 Protein of unknown function (DUF3649) 70 95 3.7E-8 T 11-10-2018 IPR022109 Protein of unknown function DUF3649 AMK58_13955 248f5f067e7de5e0472428f00202ca0d 93 Pfam PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) 35 86 6.4E-20 T 11-10-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 AMK58_18675 2d36c5727f292c118d30e1f5898757b4 97 Pfam PF13551 Winged helix-turn helix 1 46 7.7E-8 T 11-10-2018 AMK58_18675 2d36c5727f292c118d30e1f5898757b4 97 SUPERFAMILY SSF46689 2 74 8.6E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_01980 506f005de0d7e47368054a5e70001dfa 221 Pfam PF07298 NnrU protein 6 217 1.1E-39 T 11-10-2018 IPR009915 NnrU domain AMK58_12025 018f7796e97ede284e490e2745b79eec 273 PIRSF PIRSF034285 12 268 8.1E-67 T 11-10-2018 IPR017026 Inducible mutagenesis protein A AMK58_12025 018f7796e97ede284e490e2745b79eec 273 Gene3D G3DSA:3.40.50.300 62 174 2.0E-23 T 11-10-2018 AMK58_12025 018f7796e97ede284e490e2745b79eec 273 SUPERFAMILY SSF52540 61 174 8.41E-26 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_03415 ae8671c7b6d152f470be3da83e2c630d 210 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 45 199 1.8E-68 T 11-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AMK58_03415 ae8671c7b6d152f470be3da83e2c630d 210 Gene3D G3DSA:3.30.1060.10 5 210 5.0E-96 T 11-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AMK58_03415 ae8671c7b6d152f470be3da83e2c630d 210 SUPERFAMILY SSF55068 5 208 6.93E-84 T 11-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AMK58_03415 ae8671c7b6d152f470be3da83e2c630d 210 Pfam PF01625 Peptide methionine sulfoxide reductase 49 199 4.5E-68 T 11-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AMK58_03415 ae8671c7b6d152f470be3da83e2c630d 210 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 44 205 39.327 T 11-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AMK58_10090 c6645bd2b729ce49e77c42dd3f01c8b1 1137 Gene3D G3DSA:1.25.40.10 583 815 3.4E-6 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_10090 c6645bd2b729ce49e77c42dd3f01c8b1 1137 SUPERFAMILY SSF48452 598 667 6.96E-5 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_27365 6fdfe7622cf39693c69dd9c82d02932e 354 Pfam PF02653 Branched-chain amino acid transport system / permease component 46 311 3.7E-34 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_14230 95c8c71fd6df08d8bd8ac9622883a451 334 SUPERFAMILY SSF53850 31 254 1.98E-31 T 11-10-2018 AMK58_14230 95c8c71fd6df08d8bd8ac9622883a451 334 Gene3D G3DSA:3.40.190.10 111 214 1.1E-35 T 11-10-2018 AMK58_14230 95c8c71fd6df08d8bd8ac9622883a451 334 Pfam PF09084 NMT1/THI5 like 46 251 5.7E-29 T 11-10-2018 IPR015168 SsuA/THI5-like AMK58_14230 95c8c71fd6df08d8bd8ac9622883a451 334 Gene3D G3DSA:3.40.190.10 42 294 1.1E-35 T 11-10-2018 AMK58_14230 95c8c71fd6df08d8bd8ac9622883a451 334 SMART SM00062 30 250 0.0068 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMK58_11575 18b2a62ec00e1864fc54922b71fd1764 563 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 94 221 4.2E-10 T 11-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like AMK58_13310 b687cba860b3afc36eacd0af47de5704 315 SUPERFAMILY SSF161098 91 297 9.16E-21 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_13310 b687cba860b3afc36eacd0af47de5704 315 Gene3D G3DSA:1.10.3720.10 85 307 3.4E-25 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_13310 b687cba860b3afc36eacd0af47de5704 315 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 312 2.6E-35 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_01335 2eb351fd41947b4158b64b23d0f146a1 366 Pfam PF06089 L-asparaginase II 41 363 1.8E-116 T 11-10-2018 IPR010349 L-asparaginase II AMK58_25015 3e013fd28ec1ec7de7c755986f4b39fc 436 Pfam PF00860 Permease family 21 390 9.4E-97 T 11-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 AMK58_25015 3e013fd28ec1ec7de7c755986f4b39fc 436 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 14 417 8.7E-116 T 11-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 AMK58_25015 3e013fd28ec1ec7de7c755986f4b39fc 436 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 339 359 - T 11-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 AMK58_02800 92f36c99643fc0b2cc439728c9bbde39 214 SUPERFAMILY SSF52799 73 163 5.22E-9 T 11-10-2018 IPR029021 Protein-tyrosine phosphatase-like AMK58_02800 92f36c99643fc0b2cc439728c9bbde39 214 Gene3D G3DSA:3.90.190.10 12 170 1.1E-6 T 11-10-2018 IPR029021 Protein-tyrosine phosphatase-like AMK58_13945 feca491c8ca9ca059a80a52d796ab051 543 Pfam PF00361 Proton-conducting membrane transporter 136 438 8.0E-34 T 11-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_28925 1757dd8557cb4ae404fcb8c79b194978 357 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 2 336 5.1E-144 T 11-10-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 AMK58_28925 1757dd8557cb4ae404fcb8c79b194978 357 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 323 3.8E-90 T 11-10-2018 IPR016040 NAD(P)-binding domain AMK58_28925 1757dd8557cb4ae404fcb8c79b194978 357 Gene3D G3DSA:3.90.25.10 200 330 2.4E-126 T 11-10-2018 AMK58_28925 1757dd8557cb4ae404fcb8c79b194978 357 Gene3D G3DSA:3.40.50.720 2 322 2.4E-126 T 11-10-2018 AMK58_28925 1757dd8557cb4ae404fcb8c79b194978 357 SUPERFAMILY SSF51735 1 335 4.57E-91 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_08120 e5d01b9b8aba7ec9b39975fd04323c0f 404 ProSitePatterns PS00216 Sugar transport proteins signature 1. 80 96 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMK58_08120 e5d01b9b8aba7ec9b39975fd04323c0f 404 Gene3D G3DSA:1.20.1250.20 19 399 5.7E-48 T 11-10-2018 AMK58_08120 e5d01b9b8aba7ec9b39975fd04323c0f 404 SUPERFAMILY SSF103473 23 401 5.36E-56 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_08120 e5d01b9b8aba7ec9b39975fd04323c0f 404 Pfam PF07690 Major Facilitator Superfamily 30 249 1.2E-26 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMK58_12495 f6aed832c58c1cf738f8b89dfe366343 211 ProSitePatterns PS01128 Shikimate kinase signature. 75 101 - T 11-10-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 AMK58_12495 f6aed832c58c1cf738f8b89dfe366343 211 Gene3D G3DSA:3.40.50.300 20 202 2.2E-51 T 11-10-2018 AMK58_12495 f6aed832c58c1cf738f8b89dfe366343 211 Hamap MF_00109 Shikimate kinase [aroK]. 19 185 28.378 T 11-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 AMK58_12495 f6aed832c58c1cf738f8b89dfe366343 211 Pfam PF01202 Shikimate kinase 28 184 1.6E-46 T 11-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 AMK58_12495 f6aed832c58c1cf738f8b89dfe366343 211 PRINTS PR01100 Shikimate kinase family signature 22 37 4.1E-20 T 11-10-2018 AMK58_12495 f6aed832c58c1cf738f8b89dfe366343 211 PRINTS PR01100 Shikimate kinase family signature 46 59 4.1E-20 T 11-10-2018 AMK58_12495 f6aed832c58c1cf738f8b89dfe366343 211 PRINTS PR01100 Shikimate kinase family signature 74 82 4.1E-20 T 11-10-2018 AMK58_12495 f6aed832c58c1cf738f8b89dfe366343 211 PRINTS PR01100 Shikimate kinase family signature 114 131 4.1E-20 T 11-10-2018 AMK58_12495 f6aed832c58c1cf738f8b89dfe366343 211 PRINTS PR01100 Shikimate kinase family signature 93 102 4.1E-20 T 11-10-2018 AMK58_12495 f6aed832c58c1cf738f8b89dfe366343 211 SUPERFAMILY SSF52540 19 186 1.15E-25 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_04110 33b1a026eaa8881e7fe2bb562a28d555 144 Pfam PF12616 Protein of unknown function (DUF3775) 66 136 5.1E-19 T 11-10-2018 IPR022254 Protein of unknown function DUF3775 AMK58_06190 e3deed3fb792be0d99b4be6f3d96b34e 533 Gene3D G3DSA:3.60.15.10 1 419 1.1E-149 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMK58_06190 e3deed3fb792be0d99b4be6f3d96b34e 533 SUPERFAMILY SSF56281 2 402 4.72E-80 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMK58_06190 e3deed3fb792be0d99b4be6f3d96b34e 533 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 343 383 6.9E-8 T 11-10-2018 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain AMK58_06190 e3deed3fb792be0d99b4be6f3d96b34e 533 Pfam PF12706 Beta-lactamase superfamily domain 28 148 1.3E-12 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMK58_06190 e3deed3fb792be0d99b4be6f3d96b34e 533 SMART SM00849 1 195 1.8E-15 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMK58_06190 e3deed3fb792be0d99b4be6f3d96b34e 533 Gene3D G3DSA:3.40.50.10710 187 337 1.1E-149 T 11-10-2018 AMK58_06190 e3deed3fb792be0d99b4be6f3d96b34e 533 Gene3D G3DSA:3.10.20.580 430 532 7.2E-7 T 11-10-2018 AMK58_26105 a110b2611581336ecc49efc29739b187 200 Pfam PF00510 Cytochrome c oxidase subunit III 79 198 1.2E-9 T 11-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_26105 a110b2611581336ecc49efc29739b187 200 SUPERFAMILY SSF81452 26 199 9.16E-40 T 11-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_26105 a110b2611581336ecc49efc29739b187 200 Gene3D G3DSA:1.20.120.80 32 200 8.3E-42 T 11-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_17060 04a8a5e8ac803ffcf26fa1101aaf1cbc 145 ProSitePatterns PS01117 MarR-type HTH domain signature. 68 102 - T 11-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site AMK58_17060 04a8a5e8ac803ffcf26fa1101aaf1cbc 145 SUPERFAMILY SSF46785 13 140 6.2E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_17060 04a8a5e8ac803ffcf26fa1101aaf1cbc 145 SMART SM00347 27 126 1.5E-4 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_17060 04a8a5e8ac803ffcf26fa1101aaf1cbc 145 Pfam PF12802 MarR family 33 92 1.8E-9 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMK58_17060 04a8a5e8ac803ffcf26fa1101aaf1cbc 145 Gene3D G3DSA:1.10.10.10 1 140 3.7E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_04595 ea0c4d2d8f6dba275e95f9872430cf07 165 Gene3D G3DSA:1.25.40.10 20 165 4.7E-6 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_04595 ea0c4d2d8f6dba275e95f9872430cf07 165 SUPERFAMILY SSF48452 27 148 3.32E-5 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_19080 45379dd38ae08f4535e748dd4caff4e8 197 Pfam PF02660 Glycerol-3-phosphate acyltransferase 9 182 2.2E-48 T 11-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 AMK58_19080 45379dd38ae08f4535e748dd4caff4e8 197 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 5 191 20.066 T 11-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 AMK58_19080 45379dd38ae08f4535e748dd4caff4e8 197 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 4 191 1.4E-51 T 11-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 AMK58_19080 45379dd38ae08f4535e748dd4caff4e8 197 SMART SM01207 8 183 7.4E-83 T 11-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 AMK58_25125 76642c220ec8616e3148c9b66acbf6ed 192 Pfam PF07811 TadE-like protein 22 64 4.6E-6 T 11-10-2018 IPR012495 TadE-like AMK58_23355 ad4617284e2bf2e68ccb1359a10adcf9 250 Gene3D G3DSA:3.40.50.720 2 249 2.2E-30 T 11-10-2018 AMK58_23355 ad4617284e2bf2e68ccb1359a10adcf9 250 Pfam PF13460 NAD(P)H-binding 7 172 6.0E-8 T 11-10-2018 IPR016040 NAD(P)-binding domain AMK58_23355 ad4617284e2bf2e68ccb1359a10adcf9 250 SUPERFAMILY SSF51735 1 211 1.13E-31 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_28955 c70ae43e80560e9f9adb89d4ae764dbf 231 SUPERFAMILY SSF53448 3 148 9.38E-19 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_28955 c70ae43e80560e9f9adb89d4ae764dbf 231 Gene3D G3DSA:3.90.550.10 1 177 5.5E-20 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_15750 e498fad979dbca9ccf5c62340c561404 287 Pfam PF02653 Branched-chain amino acid transport system / permease component 9 276 5.9E-40 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_05855 3607d5fa33d817625c841bf9c23d469c 403 TIGRFAM TIGR00843 benE: benzoate transporter 21 390 1.8E-73 T 11-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 AMK58_05855 3607d5fa33d817625c841bf9c23d469c 403 Pfam PF03594 Benzoate membrane transport protein 17 392 1.2E-96 T 11-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 AMK58_13645 e3aa9cc5ffca14ca26aa2355ed4ef825 124 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 16 118 1.5E-30 T 11-10-2018 IPR025158 Mg chelatase-related protein, C-terminal domain AMK58_26365 0a23cf9645b8bd50b21b236b307ed0a2 101 Pfam PF10135 Rod binding protein 40 85 6.8E-9 T 11-10-2018 IPR019301 Flagellar protein FlgJ, N-terminal AMK58_24420 58c15b4dc77675c9ae4b5a4ed219adcb 155 SUPERFAMILY SSF46785 2 135 3.54E-31 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_24420 58c15b4dc77675c9ae4b5a4ed219adcb 155 Pfam PF02082 Transcriptional regulator 2 81 8.7E-23 T 11-10-2018 IPR000944 Transcription regulator Rrf2-type AMK58_24420 58c15b4dc77675c9ae4b5a4ed219adcb 155 Gene3D G3DSA:1.10.10.10 1 142 3.2E-39 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_14820 bf9c33403a0b944caa1ecd5439f201ab 162 Pfam PF07309 Flagellar protein FlaF 12 114 5.2E-24 T 11-10-2018 IPR010845 Flagellar FlaF GO:0044781 AMK58_24340 be73479165f24f5246a6fc37991899ea 164 Gene3D G3DSA:2.170.150.70 3 123 3.2E-14 T 11-10-2018 AMK58_24340 be73479165f24f5246a6fc37991899ea 164 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 26 112 6.2E-11 T 11-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 AMK58_24340 be73479165f24f5246a6fc37991899ea 164 SUPERFAMILY SSF51316 1 149 5.96E-32 T 11-10-2018 IPR011057 Mss4-like superfamily AMK58_24200 209eb654bc10dd244356d39285ebce80 495 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 20 490 5.4E-121 T 11-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 AMK58_24200 209eb654bc10dd244356d39285ebce80 495 Pfam PF02321 Outer membrane efflux protein 84 282 4.6E-31 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 AMK58_24200 209eb654bc10dd244356d39285ebce80 495 Pfam PF02321 Outer membrane efflux protein 309 489 1.3E-22 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 AMK58_24200 209eb654bc10dd244356d39285ebce80 495 SUPERFAMILY SSF56954 7 493 6.93E-106 T 11-10-2018 AMK58_24200 209eb654bc10dd244356d39285ebce80 495 Gene3D G3DSA:2.20.200.10 121 380 1.0E-123 T 11-10-2018 AMK58_24200 209eb654bc10dd244356d39285ebce80 495 Gene3D G3DSA:1.20.1600.10 74 490 1.0E-123 T 11-10-2018 AMK58_21415 e7605733cb48e9393124ab50740aead6 200 Pfam PF03861 ANTAR domain 141 193 1.2E-17 T 11-10-2018 IPR005561 ANTAR domain GO:0003723 AMK58_21415 e7605733cb48e9393124ab50740aead6 200 SUPERFAMILY SSF52172 5 193 6.89E-36 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_21415 e7605733cb48e9393124ab50740aead6 200 PIRSF PIRSF036382 1 199 1.3E-45 T 11-10-2018 IPR008327 Signal transduction response regulator, antiterminator AMK58_21415 e7605733cb48e9393124ab50740aead6 200 SMART SM01012 138 193 5.9E-21 T 11-10-2018 IPR005561 ANTAR domain GO:0003723 AMK58_21415 e7605733cb48e9393124ab50740aead6 200 Gene3D G3DSA:1.10.10.10 141 199 9.3E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_10790 afb417fb00580c4a49301d27823fa23e 149 Pfam PF07681 DoxX 17 95 1.5E-16 T 11-10-2018 IPR032808 DoxX family AMK58_00695 2c0e6388dfe295cfbff437f394200509 277 SMART SM00563 78 194 1.6E-24 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMK58_00695 2c0e6388dfe295cfbff437f394200509 277 SUPERFAMILY SSF69593 26 264 1.23E-29 T 11-10-2018 AMK58_00695 2c0e6388dfe295cfbff437f394200509 277 Pfam PF01553 Acyltransferase 70 191 3.5E-21 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMK58_19045 00fac451c14fcb3605537477031506a9 150 SUPERFAMILY SSF51316 7 128 4.81E-35 T 11-10-2018 IPR011057 Mss4-like superfamily AMK58_19045 00fac451c14fcb3605537477031506a9 150 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 32 116 1.6E-15 T 11-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 AMK58_19045 00fac451c14fcb3605537477031506a9 150 Gene3D G3DSA:2.170.150.70 11 121 1.3E-13 T 11-10-2018 AMK58_01680 ececed1ac436b0ec2b1174b4c9570622 272 Pfam PF00892 EamA-like transporter family 137 261 1.1E-6 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_01680 ececed1ac436b0ec2b1174b4c9570622 272 Pfam PF00892 EamA-like transporter family 11 127 3.5E-8 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_01680 ececed1ac436b0ec2b1174b4c9570622 272 SUPERFAMILY SSF103481 30 131 3.14E-9 T 11-10-2018 AMK58_01680 ececed1ac436b0ec2b1174b4c9570622 272 SUPERFAMILY SSF103481 171 270 3.27E-10 T 11-10-2018 AMK58_25395 aeb643e706067b82cc7eaef4d40e58ad 112 Gene3D G3DSA:3.40.1440.10 19 110 5.9E-14 T 11-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 AMK58_25395 aeb643e706067b82cc7eaef4d40e58ad 112 SUPERFAMILY SSF82771 21 95 3.4E-8 T 11-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 AMK58_03820 3435325a8ff9b71adfcd85888332f403 304 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 64 296 1.3E-49 T 11-10-2018 AMK58_03820 3435325a8ff9b71adfcd85888332f403 304 SUPERFAMILY SSF53335 52 293 2.2E-35 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_03820 3435325a8ff9b71adfcd85888332f403 304 Gene3D G3DSA:3.40.50.150 96 302 2.2E-43 T 11-10-2018 AMK58_03820 3435325a8ff9b71adfcd85888332f403 304 PIRSF PIRSF000401 20 298 2.0E-50 T 11-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 AMK58_06535 f5efddaf5ea73e981ec046dacc4c6e04 174 Pfam PF00072 Response regulator receiver domain 54 162 1.0E-14 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_06535 f5efddaf5ea73e981ec046dacc4c6e04 174 SMART SM00448 51 162 3.9E-19 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMK58_06535 f5efddaf5ea73e981ec046dacc4c6e04 174 SUPERFAMILY SSF52172 49 170 2.28E-26 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_06535 f5efddaf5ea73e981ec046dacc4c6e04 174 Gene3D G3DSA:3.40.50.2300 49 171 1.3E-27 T 11-10-2018 AMK58_06325 bb98a4ceb5885739eabd3c90c9487d28 131 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 3 131 6.6E-60 T 11-10-2018 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 AMK58_06325 bb98a4ceb5885739eabd3c90c9487d28 131 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 127 6.7E-22 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMK58_06325 bb98a4ceb5885739eabd3c90c9487d28 131 ProSitePatterns PS00934 Glyoxalase I signature 1. 8 29 - T 11-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 AMK58_06325 bb98a4ceb5885739eabd3c90c9487d28 131 SUPERFAMILY SSF54593 4 130 1.3E-35 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMK58_06325 bb98a4ceb5885739eabd3c90c9487d28 131 Gene3D G3DSA:3.10.180.10 4 131 4.0E-47 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMK58_06325 bb98a4ceb5885739eabd3c90c9487d28 131 ProSitePatterns PS00935 Glyoxalase I signature 2. 73 85 - T 11-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 AMK58_00560 db0f3e6a84c43a176c398e5e9cc710f9 261 Pfam PF02754 Cysteine-rich domain 139 223 1.3E-11 T 11-10-2018 IPR004017 Cysteine-rich domain AMK58_00560 db0f3e6a84c43a176c398e5e9cc710f9 261 Pfam PF02754 Cysteine-rich domain 10 91 8.8E-13 T 11-10-2018 IPR004017 Cysteine-rich domain AMK58_11990 6a3f442470e31187a9a03dca71f6be7d 342 Pfam PF16868 NMT1-like family 27 327 1.7E-101 T 11-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family AMK58_11990 6a3f442470e31187a9a03dca71f6be7d 342 Gene3D G3DSA:3.40.190.10 27 327 2.9E-94 T 11-10-2018 AMK58_11990 6a3f442470e31187a9a03dca71f6be7d 342 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 17 327 5.9E-84 T 11-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family AMK58_11990 6a3f442470e31187a9a03dca71f6be7d 342 SUPERFAMILY SSF53850 25 328 3.42E-65 T 11-10-2018 AMK58_11990 6a3f442470e31187a9a03dca71f6be7d 342 Gene3D G3DSA:3.40.190.10 125 262 2.9E-94 T 11-10-2018 AMK58_13575 f8fb6fa84afe652a45c65e99b246dcd9 204 Pfam PF13036 Peptidoglycan-synthase activator LpoB 47 192 2.5E-27 T 11-10-2018 IPR014094 Penicillin-binding protein activator LpoB AMK58_00590 089e4c4ca53508d9ac46a406217a45d5 320 Gene3D G3DSA:3.40.50.1980 208 320 2.2E-41 T 11-10-2018 AMK58_00590 089e4c4ca53508d9ac46a406217a45d5 320 Gene3D G3DSA:3.40.50.1980 28 207 4.5E-59 T 11-10-2018 AMK58_00590 089e4c4ca53508d9ac46a406217a45d5 320 SUPERFAMILY SSF53807 26 318 8.83E-81 T 11-10-2018 AMK58_00590 089e4c4ca53508d9ac46a406217a45d5 320 Pfam PF01297 Zinc-uptake complex component A periplasmic 29 317 3.0E-67 T 11-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 AMK58_18610 416d9375e69d82a8eacb3ade017ebf10 185 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 27 159 4.0E-22 T 11-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ AMK58_03765 4d47ec46b84348161b08db58de07a62e 145 SMART SM00116 80 127 6.5E-8 T 11-10-2018 IPR000644 CBS domain AMK58_03765 4d47ec46b84348161b08db58de07a62e 145 SMART SM00116 13 62 0.0032 T 11-10-2018 IPR000644 CBS domain AMK58_03765 4d47ec46b84348161b08db58de07a62e 145 Gene3D G3DSA:3.10.580.10 1 142 6.2E-35 T 11-10-2018 AMK58_03765 4d47ec46b84348161b08db58de07a62e 145 Pfam PF00571 CBS domain 5 60 3.4E-8 T 11-10-2018 IPR000644 CBS domain AMK58_03765 4d47ec46b84348161b08db58de07a62e 145 Pfam PF00571 CBS domain 74 123 3.5E-14 T 11-10-2018 IPR000644 CBS domain AMK58_03765 4d47ec46b84348161b08db58de07a62e 145 SUPERFAMILY SSF54631 3 131 1.24E-29 T 11-10-2018 AMK58_24535 e58f0c6558f8780d47a587b65f0e6627 231 Pfam PF06904 Extensin-like protein C-terminus 59 231 3.2E-64 T 11-10-2018 IPR009683 Extensin-like, C-terminal AMK58_22895 acf67e15e825545e22889594fb1d46a4 603 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 417 538 2.2E-27 T 11-10-2018 IPR025299 CstA, C-terminal domain AMK58_22895 acf67e15e825545e22889594fb1d46a4 603 Pfam PF02554 Carbon starvation protein CstA 4 368 2.2E-132 T 11-10-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 AMK58_28625 e1dc550c71d7844a2d3f3ade8adc5f65 433 SUPERFAMILY SSF81442 71 146 6.0E-5 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_28625 e1dc550c71d7844a2d3f3ade8adc5f65 433 Gene3D G3DSA:1.20.210.10 11 149 3.1E-8 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_14320 0d8b7787b9fe20217d2c05c2d10632e2 293 SUPERFAMILY SSF51735 8 285 8.55E-30 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_14320 0d8b7787b9fe20217d2c05c2d10632e2 293 Gene3D G3DSA:3.40.50.720 2 290 2.7E-100 T 11-10-2018 AMK58_28550 dd7adb690e59ee3bd2a2ace2cbb80a07 252 SUPERFAMILY SSF53800 6 238 6.11E-20 T 11-10-2018 AMK58_28550 dd7adb690e59ee3bd2a2ace2cbb80a07 252 Gene3D G3DSA:3.40.50.1400 6 114 5.3E-19 T 11-10-2018 AMK58_28550 dd7adb690e59ee3bd2a2ace2cbb80a07 252 Gene3D G3DSA:3.40.50.1400 127 246 6.9E-18 T 11-10-2018 AMK58_28550 dd7adb690e59ee3bd2a2ace2cbb80a07 252 Pfam PF01903 CbiX 13 109 1.0E-9 T 11-10-2018 IPR002762 Cobalamin (vitamin B12) biosynthesis CbiX GO:0009236|GO:0016852 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377 AMK58_28550 dd7adb690e59ee3bd2a2ace2cbb80a07 252 Pfam PF01903 CbiX 134 240 3.6E-9 T 11-10-2018 IPR002762 Cobalamin (vitamin B12) biosynthesis CbiX GO:0009236|GO:0016852 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377 AMK58_27170 b0ef581351f40782029b0b8378edd7f8 325 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 319 2.9E-36 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_27170 b0ef581351f40782029b0b8378edd7f8 325 Gene3D G3DSA:1.10.3720.10 84 314 3.0E-21 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_27170 b0ef581351f40782029b0b8378edd7f8 325 SUPERFAMILY SSF161098 89 305 1.44E-16 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_14330 31693847ae5e25931552415555be37fe 99 Gene3D G3DSA:2.30.30.90 16 98 1.2E-24 T 11-10-2018 IPR038157 Ferrous iron transporter, core domain AMK58_14330 31693847ae5e25931552415555be37fe 99 SUPERFAMILY SSF50037 20 97 5.04E-14 T 11-10-2018 IPR008988 Transcriptional repressor, C-terminal AMK58_14330 31693847ae5e25931552415555be37fe 99 SMART SM00899 16 97 9.7E-17 T 11-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 AMK58_14330 31693847ae5e25931552415555be37fe 99 Pfam PF04023 FeoA domain 17 96 3.7E-20 T 11-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 AMK58_27670 81cb47413a3cd2717d2e6c623553a1f8 510 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 438 2.8E-149 T 11-10-2018 IPR002823 Protein of unknown function DUF112, transmembrane AMK58_02490 b5e83826e168e6ca016162a60f017dec 316 SUPERFAMILY SSF53448 2 243 1.97E-31 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_02490 b5e83826e168e6ca016162a60f017dec 316 Pfam PF00535 Glycosyl transferase family 2 7 157 2.3E-14 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMK58_02490 b5e83826e168e6ca016162a60f017dec 316 Gene3D G3DSA:3.90.550.10 1 228 6.3E-41 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_19215 b1d467204623259165e0c1076ad76268 282 Pfam PF00892 EamA-like transporter family 144 277 3.6E-10 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_19215 b1d467204623259165e0c1076ad76268 282 SUPERFAMILY SSF103481 37 136 1.31E-10 T 11-10-2018 AMK58_19215 b1d467204623259165e0c1076ad76268 282 SUPERFAMILY SSF103481 179 279 4.51E-12 T 11-10-2018 AMK58_01495 b2eac0d8c335295ce2659c83dc179156 94 Pfam PF02325 YGGT family 10 86 6.8E-23 T 11-10-2018 IPR003425 CCB3/YggT GO:0016020 AMK58_08795 8ef37acbe00092d837ec0157951c2212 157 Gene3D G3DSA:1.20.1220.20 2 153 4.0E-46 T 11-10-2018 AMK58_08795 8ef37acbe00092d837ec0157951c2212 157 Pfam PF01724 Domain of unknown function DUF29 7 149 4.6E-38 T 11-10-2018 IPR002636 Protein from unkown function DUF29 AMK58_18330 34475b5a7b0fc864beba1a72093a807e 535 SUPERFAMILY SSF53756 151 510 1.92E-17 T 11-10-2018 AMK58_18330 34475b5a7b0fc864beba1a72093a807e 535 Pfam PF13692 Glycosyl transferases group 1 372 480 3.9E-9 T 11-10-2018 AMK58_18330 34475b5a7b0fc864beba1a72093a807e 535 Gene3D G3DSA:3.40.50.2000 341 496 2.0E-17 T 11-10-2018 AMK58_25975 2b1f1b34be8e76f0f45bba187d57af37 381 SUPERFAMILY SSF53822 22 379 1.38E-81 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMK58_25975 2b1f1b34be8e76f0f45bba187d57af37 381 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 24 40 5.9E-9 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMK58_25975 2b1f1b34be8e76f0f45bba187d57af37 381 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 46 62 5.9E-9 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMK58_25975 2b1f1b34be8e76f0f45bba187d57af37 381 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 255 273 5.9E-9 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMK58_25975 2b1f1b34be8e76f0f45bba187d57af37 381 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 65 83 5.9E-9 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMK58_25975 2b1f1b34be8e76f0f45bba187d57af37 381 Gene3D G3DSA:3.40.50.2300 143 276 3.1E-82 T 11-10-2018 AMK58_25975 2b1f1b34be8e76f0f45bba187d57af37 381 Gene3D G3DSA:3.40.50.2300 25 349 3.1E-82 T 11-10-2018 AMK58_25975 2b1f1b34be8e76f0f45bba187d57af37 381 Pfam PF13458 Periplasmic binding protein 23 377 9.5E-70 T 11-10-2018 IPR028081 Leucine-binding protein domain AMK58_05775 de0e02d140480b05984d415a16717ce6 163 PIRSF PIRSF016789 19 139 1.6E-32 T 11-10-2018 IPR007401 Protein of unknown function DUF454 AMK58_05775 de0e02d140480b05984d415a16717ce6 163 Pfam PF04304 Protein of unknown function (DUF454) 20 133 4.0E-36 T 11-10-2018 IPR007401 Protein of unknown function DUF454 AMK58_00345 4432b9ee313d9dcb179591a478153a09 454 Pfam PF13449 Esterase-like activity of phytase 97 425 2.0E-62 T 11-10-2018 IPR027372 Phytase-like domain AMK58_01120 826e37b38a3bd926f868ceed8803c9b6 401 Pfam PF00950 ABC 3 transport family 24 288 1.3E-54 T 11-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 AMK58_01120 826e37b38a3bd926f868ceed8803c9b6 401 SUPERFAMILY SSF81345 28 284 1.31E-25 T 11-10-2018 IPR037294 ABC transporter, BtuC-like AMK58_01120 826e37b38a3bd926f868ceed8803c9b6 401 Gene3D G3DSA:1.10.3470.10 53 291 3.1E-6 T 11-10-2018 IPR037294 ABC transporter, BtuC-like AMK58_28760 7d45e012715538c66dfd69c81a4f832c 389 Gene3D G3DSA:1.25.40.10 173 355 6.2E-9 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_28760 7d45e012715538c66dfd69c81a4f832c 389 SMART SM00028 18 51 1.6 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_28760 7d45e012715538c66dfd69c81a4f832c 389 SMART SM00028 288 321 9.6 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMK58_28760 7d45e012715538c66dfd69c81a4f832c 389 SUPERFAMILY SSF48452 12 350 3.8E-12 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_28760 7d45e012715538c66dfd69c81a4f832c 389 Gene3D G3DSA:1.25.40.10 3 140 2.5E-10 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_20975 ae557c005bb529a893520aee7b5c17ac 242 Pfam PF03591 AzlC protein 16 157 8.7E-38 T 11-10-2018 IPR011606 Branched-chain amino acid transport, permease AMK58_15780 3fadd6b246abf4b00560f02c7dcd6885 392 SUPERFAMILY SSF51905 5 381 2.4E-46 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_15780 3fadd6b246abf4b00560f02c7dcd6885 392 Gene3D G3DSA:3.30.9.10 94 320 1.3E-100 T 11-10-2018 AMK58_15780 3fadd6b246abf4b00560f02c7dcd6885 392 Gene3D G3DSA:3.50.50.60 5 362 1.3E-100 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMK58_15780 3fadd6b246abf4b00560f02c7dcd6885 392 Pfam PF01266 FAD dependent oxidoreductase 6 361 9.6E-55 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMK58_04260 3e0645910aa369eb12acb0b84144ad90 161 Pfam PF09361 Phasin protein 47 144 2.0E-24 T 11-10-2018 IPR018968 Phasin AMK58_04260 3e0645910aa369eb12acb0b84144ad90 161 TIGRFAM TIGR01841 phasin: phasin family protein 67 150 1.7E-12 T 11-10-2018 IPR010127 Phasin, subfamily 1 AMK58_23960 e5edbbc2231e215193f8731d7aed22d7 499 Pfam PF02652 L-lactate permease 83 261 1.1E-5 T 11-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 AMK58_23960 e5edbbc2231e215193f8731d7aed22d7 499 Pfam PF02652 L-lactate permease 322 478 6.0E-13 T 11-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 AMK58_17945 dd0a239528971f2e8008b010984045a4 122 Gene3D G3DSA:1.10.1660.10 12 102 4.3E-18 T 11-10-2018 AMK58_17945 dd0a239528971f2e8008b010984045a4 122 Pfam PF13591 MerR HTH family regulatory protein 21 95 6.7E-12 T 11-10-2018 AMK58_04440 a3baf20e26c07317bcaf03b791e10d85 436 SMART SM00283 175 429 3.9E-37 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_04440 a3baf20e26c07317bcaf03b791e10d85 436 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 257 415 2.2E-28 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMK58_04440 a3baf20e26c07317bcaf03b791e10d85 436 SUPERFAMILY SSF58104 83 428 9.02E-58 T 11-10-2018 AMK58_04440 a3baf20e26c07317bcaf03b791e10d85 436 Gene3D G3DSA:1.10.287.950 139 436 1.1E-51 T 11-10-2018 AMK58_04440 a3baf20e26c07317bcaf03b791e10d85 436 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 302 331 4.7E-17 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_04440 a3baf20e26c07317bcaf03b791e10d85 436 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 273 300 4.7E-17 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_04440 a3baf20e26c07317bcaf03b791e10d85 436 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 196 225 4.7E-17 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMK58_05320 db7696437894af402a0c702e3a3fb1a9 318 Gene3D G3DSA:1.10.10.1320 2 98 8.4E-5 T 11-10-2018 AMK58_27675 0374d56a6586dd03015ed4816101e390 223 TIGRFAM TIGR03717 R_switched_YjbE: integral membrane protein, YjbE family 13 210 1.7E-62 T 11-10-2018 IPR022301 Integral membrane protein YjbE AMK58_27675 0374d56a6586dd03015ed4816101e390 223 Pfam PF03741 Integral membrane protein TerC family 15 210 2.3E-41 T 11-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 AMK58_15240 64a03abba9210d8cab43ed2658d30f76 500 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 17 438 1.9E-117 T 11-10-2018 IPR002823 Protein of unknown function DUF112, transmembrane AMK58_18045 7cc8f9cdded98ca7a91aa6bb438642f7 176 SUPERFAMILY SSF55729 3 150 5.91E-32 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_18045 7cc8f9cdded98ca7a91aa6bb438642f7 176 Gene3D G3DSA:3.40.630.30 3 176 3.0E-35 T 11-10-2018 AMK58_18045 7cc8f9cdded98ca7a91aa6bb438642f7 176 Pfam PF13302 Acetyltransferase (GNAT) domain 8 140 1.5E-21 T 11-10-2018 IPR000182 GNAT domain AMK58_27210 f5d4e8f6655f6c08068d9a4ff06d1ed5 330 Gene3D G3DSA:3.40.50.2300 132 324 5.4E-80 T 11-10-2018 AMK58_27210 f5d4e8f6655f6c08068d9a4ff06d1ed5 330 Gene3D G3DSA:3.40.50.2300 33 288 5.4E-80 T 11-10-2018 AMK58_27210 f5d4e8f6655f6c08068d9a4ff06d1ed5 330 Pfam PF02608 ABC transporter substrate-binding protein PnrA-like 38 295 2.5E-40 T 11-10-2018 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 AMK58_27210 f5d4e8f6655f6c08068d9a4ff06d1ed5 330 SUPERFAMILY SSF53822 46 264 6.24E-7 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMK58_09625 ff0ebf39c1de12390cf127270e37601d 463 Pfam PF02386 Cation transport protein 19 456 2.7E-52 T 11-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 AMK58_09625 ff0ebf39c1de12390cf127270e37601d 463 PIRSF PIRSF006247 1 463 3.3E-148 T 11-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 AMK58_22845 fe945f778116f0f3c8e974a66ccd30a0 140 TIGRFAM TIGR02803 ExbD_1: TonB system transport protein ExbD 15 135 8.2E-63 T 11-10-2018 IPR014170 TonB system transport protein ExbD type-1 GO:0016020|GO:0055085 AMK58_22845 fe945f778116f0f3c8e974a66ccd30a0 140 Pfam PF02472 Biopolymer transport protein ExbD/TolR 13 132 2.3E-27 T 11-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 AMK58_22845 fe945f778116f0f3c8e974a66ccd30a0 140 Gene3D G3DSA:3.30.420.270 62 131 1.3E-24 T 11-10-2018 AMK58_25485 04fe52ff696dab075f8282ddc7524885 181 Pfam PF10027 Predicted integral membrane protein (DUF2269) 4 151 2.7E-17 T 11-10-2018 IPR018729 Protein of unknown function DUF2269, transmembrane AMK58_07970 5dd636be638b70a53f796d0671a3e25b 266 Gene3D G3DSA:3.40.50.150 20 189 2.5E-5 T 11-10-2018 AMK58_15700 705b3e92e378397ff636faefe162d8eb 328 Gene3D G3DSA:3.40.190.170 22 327 1.6E-88 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily AMK58_15700 705b3e92e378397ff636faefe162d8eb 328 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 33 313 6.2E-71 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 AMK58_03045 76fd2fc394a05dda44deef16df4e41d0 78 Gene3D G3DSA:1.10.3990.20 1 72 2.3E-8 T 11-10-2018 IPR038268 Ribbon-helix-helix domain superfamily AMK58_03045 76fd2fc394a05dda44deef16df4e41d0 78 Pfam PF13467 Ribbon-helix-helix domain 1 48 1.2E-16 T 11-10-2018 IPR027373 Ribbon-helix-helix domain AMK58_05495 abc87daadb76741ebd9c0362811925d6 162 Gene3D G3DSA:2.60.40.420 40 162 7.4E-20 T 11-10-2018 IPR008972 Cupredoxin AMK58_05495 abc87daadb76741ebd9c0362811925d6 162 SUPERFAMILY SSF49503 55 161 5.01E-18 T 11-10-2018 IPR008972 Cupredoxin AMK58_05495 abc87daadb76741ebd9c0362811925d6 162 Pfam PF13473 Cupredoxin-like domain 50 161 1.4E-8 T 11-10-2018 IPR028096 EfeO-type cupredoxin-like domain AMK58_23350 78c2f23d157cfe64d4dc79ee6466e613 148 SUPERFAMILY SSF69118 4 144 1.15E-34 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMK58_23350 78c2f23d157cfe64d4dc79ee6466e613 148 Gene3D G3DSA:1.20.1290.10 1 147 5.5E-36 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMK58_23350 78c2f23d157cfe64d4dc79ee6466e613 148 Pfam PF02627 Carboxymuconolactone decarboxylase family 11 94 2.6E-12 T 11-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMK58_23350 78c2f23d157cfe64d4dc79ee6466e613 148 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 33 62 1.0E-9 T 11-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMK58_00830 c81a01c236de8a3544e26783d17d093b 184 Pfam PF06347 Bacterial SH3 domain 128 176 1.5E-11 T 11-10-2018 IPR010466 Protein of unknown function DUF1058 AMK58_00830 c81a01c236de8a3544e26783d17d093b 184 Pfam PF06347 Bacterial SH3 domain 60 115 2.7E-16 T 11-10-2018 IPR010466 Protein of unknown function DUF1058 AMK58_00830 c81a01c236de8a3544e26783d17d093b 184 Gene3D G3DSA:2.30.30.40 115 173 1.7E-5 T 11-10-2018 AMK58_00830 c81a01c236de8a3544e26783d17d093b 184 Gene3D G3DSA:2.30.30.40 59 114 1.3E-6 T 11-10-2018 AMK58_03340 cbbc491e7496f8a29e8f3dfd9b7561ca 214 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 109 184 6.9E-9 T 11-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 AMK58_03340 cbbc491e7496f8a29e8f3dfd9b7561ca 214 Gene3D G3DSA:2.60.120.620 5 198 9.0E-16 T 11-10-2018 AMK58_28620 918f95e0bb448d6aa6be4b918d8fb133 173 Gene3D G3DSA:1.20.120.520 4 168 3.0E-18 T 11-10-2018 AMK58_28620 918f95e0bb448d6aa6be4b918d8fb133 173 Pfam PF01814 Hemerythrin HHE cation binding domain 11 148 6.9E-13 T 11-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 AMK58_20940 41e4e7211ac747639eff44aa1186cda1 283 Pfam PF09361 Phasin protein 25 111 2.0E-7 T 11-10-2018 IPR018968 Phasin AMK58_28410 7816b4b77528bd2bb024e760160483a0 87 Pfam PF13610 DDE domain 6 63 4.0E-14 T 11-10-2018 IPR032874 DDE domain AMK58_23145 a883a78262071b03e2e9b6a6c200d19c 420 SUPERFAMILY SSF103473 19 402 9.55E-35 T 11-10-2018 IPR036259 MFS transporter superfamily AMK58_23145 a883a78262071b03e2e9b6a6c200d19c 420 Gene3D G3DSA:1.20.1250.20 18 406 1.8E-31 T 11-10-2018 AMK58_23145 a883a78262071b03e2e9b6a6c200d19c 420 Pfam PF05977 Transmembrane secretion effector 17 400 6.4E-24 T 11-10-2018 IPR010290 Transmembrane secretion effector AMK58_26425 65919e822a5300613b10a15360733bd9 179 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 41 170 9.2E-27 T 11-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ AMK58_23725 f0fe635531cd21cad6984a7ac4f140d2 201 Pfam PF09335 SNARE associated Golgi protein 30 161 2.2E-20 T 11-10-2018 IPR032816 SNARE associated Golgi protein AMK58_00735 99e2a7009eeada5820099e154139c435 236 Gene3D G3DSA:3.40.50.150 22 235 1.2E-48 T 11-10-2018 AMK58_00735 99e2a7009eeada5820099e154139c435 236 SUPERFAMILY SSF53335 58 228 4.95E-23 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_00735 99e2a7009eeada5820099e154139c435 236 Pfam PF02390 Putative methyltransferase 60 224 4.5E-33 T 11-10-2018 AMK58_00735 99e2a7009eeada5820099e154139c435 236 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 14 233 24.678 T 11-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 AMK58_15575 3e6634ebcdbca6f6a3997eea9a16ca38 248 Gene3D G3DSA:3.40.50.1820 12 243 4.0E-35 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_15575 3e6634ebcdbca6f6a3997eea9a16ca38 248 SUPERFAMILY SSF53474 18 238 9.81E-28 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_15575 3e6634ebcdbca6f6a3997eea9a16ca38 248 Pfam PF12697 Alpha/beta hydrolase family 23 233 1.1E-16 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_00725 a1783a9d8cf0310c44f6dbb4c6f660a3 162 SUPERFAMILY SSF47413 16 93 1.61E-28 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMK58_00725 a1783a9d8cf0310c44f6dbb4c6f660a3 162 Pfam PF01381 Helix-turn-helix 33 85 5.9E-12 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMK58_00725 a1783a9d8cf0310c44f6dbb4c6f660a3 162 SMART SM00530 31 86 1.4E-12 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMK58_00725 a1783a9d8cf0310c44f6dbb4c6f660a3 162 Gene3D G3DSA:1.10.260.40 22 91 4.7E-15 T 11-10-2018 AMK58_21165 912f18b30517683637949e35368d4da6 179 SUPERFAMILY SSF81342 21 155 3.69E-8 T 11-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 AMK58_06690 ce0c90595466e40f32ce3c2baed86ac1 212 SUPERFAMILY SSF110997 117 190 8.5E-9 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 AMK58_06690 ce0c90595466e40f32ce3c2baed86ac1 212 Pfam PF05036 Sporulation related domain 117 186 6.7E-5 T 11-10-2018 IPR007730 Sporulation-like domain GO:0042834 AMK58_12935 9c9f7ceb81fee8fcc97d5301af26e505 339 Gene3D G3DSA:3.20.20.30 6 334 1.0E-101 T 11-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMK58_12935 9c9f7ceb81fee8fcc97d5301af26e505 339 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 11 330 1.8E-139 T 11-10-2018 IPR019949 Luciferase family oxidoreductase, group 1 AMK58_12935 9c9f7ceb81fee8fcc97d5301af26e505 339 Pfam PF00296 Luciferase-like monooxygenase 24 307 2.7E-36 T 11-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMK58_12935 9c9f7ceb81fee8fcc97d5301af26e505 339 SUPERFAMILY SSF51679 11 330 7.2E-87 T 11-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMK58_17505 12f2b5249b0c1c4f1996b821f3b8c0aa 305 Pfam PF00146 NADH dehydrogenase 3 298 3.0E-36 T 11-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMK58_01565 53e602e545d3d5567e83075985fa1c53 992 SUPERFAMILY SSF52540 324 673 8.07E-36 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_01565 53e602e545d3d5567e83075985fa1c53 992 TIGRFAM TIGR02786 addB_alphas: double-strand break repair protein AddB 8 984 0.0 T 11-10-2018 IPR014153 Double-strand break repair protein AddB AMK58_01565 53e602e545d3d5567e83075985fa1c53 992 Pfam PF12705 PD-(D/E)XK nuclease superfamily 720 962 3.6E-22 T 11-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type AMK58_19310 50239870d2b4d4b53300c85882c60528 203 PIRSF PIRSF006324 1 203 9.2E-41 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMK58_19310 50239870d2b4d4b53300c85882c60528 203 Pfam PF01810 LysE type translocator 16 201 1.3E-32 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMK58_02000 cb8453fa461baacd76c52826f325cfcc 325 SUPERFAMILY SSF75708 86 264 6.41E-39 T 11-10-2018 AMK58_02000 cb8453fa461baacd76c52826f325cfcc 325 Gene3D G3DSA:1.10.287.500 157 206 1.8E-5 T 11-10-2018 AMK58_13595 f87ff7697a6869460d6603231d2cf8d2 293 Pfam PF00892 EamA-like transporter family 146 276 2.3E-6 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_13595 f87ff7697a6869460d6603231d2cf8d2 293 Pfam PF00892 EamA-like transporter family 7 136 1.3E-7 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_13595 f87ff7697a6869460d6603231d2cf8d2 293 SUPERFAMILY SSF103481 183 281 3.14E-10 T 11-10-2018 AMK58_13595 f87ff7697a6869460d6603231d2cf8d2 293 SUPERFAMILY SSF103481 43 138 1.44E-9 T 11-10-2018 AMK58_07760 84bba3510d4438aa55b30e095211e21a 277 Pfam PF02698 DUF218 domain 80 249 8.4E-24 T 11-10-2018 IPR003848 Domain of unknown function DUF218 AMK58_24250 ffc7b4d34bbb841d6a2410bce944eb8a 217 Pfam PF03741 Integral membrane protein TerC family 15 205 8.1E-43 T 11-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 AMK58_24250 ffc7b4d34bbb841d6a2410bce944eb8a 217 TIGRFAM TIGR03717 R_switched_YjbE: integral membrane protein, YjbE family 13 205 6.1E-64 T 11-10-2018 IPR022301 Integral membrane protein YjbE AMK58_19875 7da385f87f9103f14c8a7fc45960e952 102 Pfam PF13467 Ribbon-helix-helix domain 27 90 4.7E-21 T 11-10-2018 IPR027373 Ribbon-helix-helix domain AMK58_19875 7da385f87f9103f14c8a7fc45960e952 102 Gene3D G3DSA:1.10.3990.20 23 101 1.6E-13 T 11-10-2018 IPR038268 Ribbon-helix-helix domain superfamily AMK58_18400 4251268ddefdddf2a05810a54e85fb4e 221 SUPERFAMILY SSF159594 31 202 2.07E-39 T 11-10-2018 AMK58_18400 4251268ddefdddf2a05810a54e85fb4e 221 Gene3D G3DSA:3.40.50.10610 24 210 9.2E-58 T 11-10-2018 AMK58_18400 4251268ddefdddf2a05810a54e85fb4e 221 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 33 193 1.1E-17 T 11-10-2018 IPR005586 ABC-type transport auxiliary lipoprotein component AMK58_04390 a7c209ab3d0478ef19e0455899c7a481 120 PIRSF PIRSF032126 1 119 3.4E-25 T 11-10-2018 IPR016989 ATP synthase protein I, alphaproteobacterial AMK58_04390 a7c209ab3d0478ef19e0455899c7a481 120 Pfam PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter 42 93 1.8E-18 T 11-10-2018 IPR032820 Putative F0F1-ATPase subunit, Ca2+/Mg2+ transporter AMK58_02915 5fdf2d6bae634c114fb536731dc20087 446 SUPERFAMILY SSF53098 147 395 1.44E-5 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMK58_02915 5fdf2d6bae634c114fb536731dc20087 446 Pfam PF13701 Transposase DDE domain group 1 12 445 8.2E-157 T 11-10-2018 IPR025668 Transposase DDE domain AMK58_00705 cf48ccd8490cc7b40b25978a82a1139e 357 Gene3D G3DSA:3.40.50.300 120 326 4.3E-73 T 11-10-2018 AMK58_00705 cf48ccd8490cc7b40b25978a82a1139e 357 SUPERFAMILY SSF52540 122 303 5.85E-36 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_00705 cf48ccd8490cc7b40b25978a82a1139e 357 Pfam PF02562 PhoH-like protein 123 326 6.4E-92 T 11-10-2018 IPR003714 PhoH-like protein GO:0005524 AMK58_00705 cf48ccd8490cc7b40b25978a82a1139e 357 SUPERFAMILY SSF54791 20 75 6.96E-5 T 11-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 AMK58_08270 98bee4317eafc9333b2ab5340b598222 155 Gene3D G3DSA:3.30.1450.10 29 118 2.9E-11 T 11-10-2018 IPR037873 BamE-like AMK58_08270 98bee4317eafc9333b2ab5340b598222 155 Pfam PF04355 SmpA / OmlA family 30 104 3.4E-17 T 11-10-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 AMK58_28965 1fbd1b04dd7bf57510d82921f37295b1 260 SMART SM00382 58 230 1.4E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_28965 1fbd1b04dd7bf57510d82921f37295b1 260 SUPERFAMILY SSF52540 46 244 2.0E-39 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_28965 1fbd1b04dd7bf57510d82921f37295b1 260 Gene3D G3DSA:3.40.50.300 35 255 3.9E-38 T 11-10-2018 AMK58_28965 1fbd1b04dd7bf57510d82921f37295b1 260 Pfam PF00005 ABC transporter 49 181 6.0E-19 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_03125 bda810e531fa271807e5d6fbcf543094 320 Pfam PF01882 Protein of unknown function DUF58 48 132 2.9E-21 T 11-10-2018 IPR002881 Domain of unknown function DUF58 AMK58_05025 692aa0a4d16aea31cdce8084931361a0 129 Pfam PF06803 Protein of unknown function (DUF1232) 32 68 7.4E-14 T 11-10-2018 IPR010652 Domain of unknown function DUF1232 MetaCyc: PWY-7511 AMK58_06600 6a51b7170d89fec828e88f4a7fb64a62 269 SUPERFAMILY SSF161098 61 245 3.4E-28 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_06600 6a51b7170d89fec828e88f4a7fb64a62 269 Gene3D G3DSA:1.10.3720.10 57 256 1.9E-21 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_06600 6a51b7170d89fec828e88f4a7fb64a62 269 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 253 8.4E-23 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_26785 46daee82ca5d5c8ef07f4bc9face10d9 221 Pfam PF07879 PHB/PHA accumulation regulator DNA-binding domain 13 73 3.3E-30 T 11-10-2018 IPR012909 PHA accumulation regulator DNA-binding, N-terminal AMK58_26785 46daee82ca5d5c8ef07f4bc9face10d9 221 Pfam PF05233 PHB accumulation regulatory domain 77 116 6.3E-18 T 11-10-2018 IPR007897 PHB accumulation regulatory AMK58_26785 46daee82ca5d5c8ef07f4bc9face10d9 221 TIGRFAM TIGR01848 PHA_reg_PhaR: polyhydroxyalkanoate synthesis repressor PhaR 14 117 5.1E-46 T 11-10-2018 IPR010134 Polyhydroxyalkanoate synthesis repressor PhaR GO:0006355 AMK58_04785 dae395d2a31f944cd56e654213f50465 377 Pfam PF12698 ABC-2 family transporter protein 26 369 6.3E-53 T 11-10-2018 AMK58_01075 ce808924292e262b7c929993b41931bf 270 SUPERFAMILY SSF89260 25 89 3.92E-6 T 11-10-2018 AMK58_01075 ce808924292e262b7c929993b41931bf 270 Gene3D G3DSA:2.60.120.380 7 109 1.9E-7 T 11-10-2018 AMK58_09935 e0996492bb180af39c00d1dac38f21f7 127 Pfam PF07750 GcrA cell cycle regulator 55 112 1.8E-21 T 11-10-2018 IPR011681 GcrA cell cycle regulator AMK58_09935 e0996492bb180af39c00d1dac38f21f7 127 Pfam PF07750 GcrA cell cycle regulator 1 54 4.4E-22 T 11-10-2018 IPR011681 GcrA cell cycle regulator AMK58_09935 e0996492bb180af39c00d1dac38f21f7 127 Gene3D G3DSA:1.10.10.60 2 46 1.7E-7 T 11-10-2018 AMK58_05530 27e96c1fe370f7eff497fc9602cb47af 180 Pfam PF03350 Uncharacterized protein family, UPF0114 10 126 2.3E-39 T 11-10-2018 IPR005134 Uncharacterised protein family UPF0114 AMK58_05530 27e96c1fe370f7eff497fc9602cb47af 180 TIGRFAM TIGR00645 HI0507: TIGR00645 family protein 3 168 5.4E-63 T 11-10-2018 IPR020761 Uncharacterised protein family UPF0114, bacteria AMK58_05530 27e96c1fe370f7eff497fc9602cb47af 180 Hamap MF_00143 UPF0114 protein YqhA [yqhA]. 1 168 84.394 T 11-10-2018 IPR020761 Uncharacterised protein family UPF0114, bacteria AMK58_08470 c005dedd10559344a14699073c497d26 241 Pfam PF04367 Protein of unknown function (DUF502) 85 187 2.9E-33 T 11-10-2018 IPR007462 Protein of unknown function DUF502 AMK58_17340 4acfe0c1028adabca050876313fbcc54 169 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 23 153 8.4E-24 T 11-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ AMK58_07675 95df6036556b1fb78bf8ee234f8e68de 213 Gene3D G3DSA:3.40.630.30 14 192 2.4E-13 T 11-10-2018 AMK58_07675 95df6036556b1fb78bf8ee234f8e68de 213 SUPERFAMILY SSF55729 65 192 2.16E-17 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_07675 95df6036556b1fb78bf8ee234f8e68de 213 Pfam PF00583 Acetyltransferase (GNAT) family 91 182 1.8E-7 T 11-10-2018 IPR000182 GNAT domain AMK58_01345 09c14f331b033bad34f183818aaa36bb 228 SUPERFAMILY SSF51182 105 219 4.34E-15 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily AMK58_01345 09c14f331b033bad34f183818aaa36bb 228 Pfam PF12973 ChrR Cupin-like domain 137 205 4.6E-12 T 11-10-2018 IPR025979 ChrR-like cupin domain AMK58_01345 09c14f331b033bad34f183818aaa36bb 228 Gene3D G3DSA:2.60.120.10 110 210 8.1E-24 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMK58_01345 09c14f331b033bad34f183818aaa36bb 228 TIGRFAM TIGR02451 anti_sig_ChrR: anti-sigma factor, putative, ChrR family 6 227 5.3E-57 T 11-10-2018 IPR012807 Anti-sigma factor ChrR, putative AMK58_01345 09c14f331b033bad34f183818aaa36bb 228 Gene3D G3DSA:1.10.10.1320 1 108 1.4E-32 T 11-10-2018 AMK58_05040 e0b7bf9911c73f7f82af6056199b1216 256 Pfam PF01904 Protein of unknown function DUF72 30 242 6.1E-49 T 11-10-2018 IPR002763 Protein of unknown function DUF72 AMK58_05040 e0b7bf9911c73f7f82af6056199b1216 256 Gene3D G3DSA:3.20.20.410 2 246 3.9E-56 T 11-10-2018 IPR036520 UPF0759 superfamily AMK58_05040 e0b7bf9911c73f7f82af6056199b1216 256 SUPERFAMILY SSF117396 7 245 1.83E-67 T 11-10-2018 IPR036520 UPF0759 superfamily AMK58_23020 1044e3ad03ab5244bebe8145e9ea8f40 720 Gene3D G3DSA:3.90.550.10 458 697 6.0E-8 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_23020 1044e3ad03ab5244bebe8145e9ea8f40 720 SUPERFAMILY SSF53448 456 694 3.6E-10 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_20860 c8d5e3dcd49f49e6813a848f4f4eabf6 223 SUPERFAMILY SSF81901 21 194 1.22E-33 T 11-10-2018 AMK58_20860 c8d5e3dcd49f49e6813a848f4f4eabf6 223 SMART SM00671 50 85 4.9E-8 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_20860 c8d5e3dcd49f49e6813a848f4f4eabf6 223 SMART SM00671 122 157 0.035 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_20860 c8d5e3dcd49f49e6813a848f4f4eabf6 223 SMART SM00671 86 121 0.0022 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_20860 c8d5e3dcd49f49e6813a848f4f4eabf6 223 SMART SM00671 16 49 44.0 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_20860 c8d5e3dcd49f49e6813a848f4f4eabf6 223 Gene3D G3DSA:1.25.40.10 10 220 9.9E-43 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMK58_20860 c8d5e3dcd49f49e6813a848f4f4eabf6 223 Pfam PF08238 Sel1 repeat 51 85 1.2E-7 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_20860 c8d5e3dcd49f49e6813a848f4f4eabf6 223 Pfam PF08238 Sel1 repeat 174 186 47.0 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_20860 c8d5e3dcd49f49e6813a848f4f4eabf6 223 Pfam PF08238 Sel1 repeat 88 121 1.2E-5 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_20860 c8d5e3dcd49f49e6813a848f4f4eabf6 223 Pfam PF08238 Sel1 repeat 123 157 0.071 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_20860 c8d5e3dcd49f49e6813a848f4f4eabf6 223 Pfam PF08238 Sel1 repeat 34 49 0.76 T 11-10-2018 IPR006597 Sel1-like repeat AMK58_16585 521428863134ed858ae8b75371c5c945 143 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 15 124 8.8E-16 T 11-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 AMK58_16585 521428863134ed858ae8b75371c5c945 143 Pfam PF03061 Thioesterase superfamily 43 119 2.6E-12 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AMK58_16585 521428863134ed858ae8b75371c5c945 143 Gene3D G3DSA:3.10.129.10 2 133 4.2E-37 T 11-10-2018 AMK58_16585 521428863134ed858ae8b75371c5c945 143 SUPERFAMILY SSF54637 10 129 1.82E-29 T 11-10-2018 IPR029069 HotDog domain superfamily AMK58_22745 dcd796d9c62a9f884d8e04c4780a0876 170 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 23 164 1.6E-18 T 11-10-2018 IPR009936 Protein of unknown function DUF1468 AMK58_26065 f0c14388b6e0a8098571e584aaf6e496 596 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 332 559 1.9E-59 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit AMK58_26065 f0c14388b6e0a8098571e584aaf6e496 596 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 6 317 5.4E-61 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit AMK58_12180 a537c6488c89f6cb6de4cfb6b82e2e3a 443 Pfam PF02653 Branched-chain amino acid transport system / permease component 147 427 1.4E-44 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_01395 60ef050c34a9ae080b8007310f7b7862 147 Pfam PF06803 Protein of unknown function (DUF1232) 68 103 6.0E-12 T 11-10-2018 IPR010652 Domain of unknown function DUF1232 MetaCyc: PWY-7511 AMK58_16730 1da6ddfc195b6419ab0bbf13b4e822f5 581 Pfam PF02538 Hydantoinase B/oxoprolinase 9 531 3.3E-169 T 11-10-2018 IPR003692 Hydantoinase B/oxoprolinase GO:0003824 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 AMK58_27880 8183159245596a7bd9a866889a24e6b7 162 Pfam PF01618 MotA/TolQ/ExbB proton channel family 72 139 1.9E-6 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel AMK58_08165 149471781458ac52515ed49fc58d4e81 254 Gene3D G3DSA:1.10.3720.10 53 250 4.0E-17 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_08165 149471781458ac52515ed49fc58d4e81 254 SUPERFAMILY SSF161098 57 237 9.68E-24 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_08165 149471781458ac52515ed49fc58d4e81 254 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 80 247 9.1E-13 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_06645 f50306f2fc3ca6f6ad7275edf0edc8ae 214 Gene3D G3DSA:3.40.50.1820 2 209 7.2E-44 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_06645 f50306f2fc3ca6f6ad7275edf0edc8ae 214 SUPERFAMILY SSF53474 18 208 4.26E-22 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_16240 06181ba432eb1e1ec1fcc30994d935c9 251 Gene3D G3DSA:3.40.30.10 42 196 5.8E-25 T 11-10-2018 AMK58_16240 06181ba432eb1e1ec1fcc30994d935c9 251 SUPERFAMILY SSF52833 45 176 6.04E-12 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_07250 86581767dfaf7ce5fbf8a36e2435bd3b 236 SMART SM00382 26 213 3.6E-5 T 11-10-2018 IPR003593 AAA+ ATPase domain AMK58_07250 86581767dfaf7ce5fbf8a36e2435bd3b 236 PIRSF PIRSF039137 1 235 3.3E-103 T 11-10-2018 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 AMK58_07250 86581767dfaf7ce5fbf8a36e2435bd3b 236 Pfam PF00005 ABC transporter 17 161 5.8E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMK58_07250 86581767dfaf7ce5fbf8a36e2435bd3b 236 Gene3D G3DSA:3.40.50.300 1 235 2.4E-59 T 11-10-2018 AMK58_07250 86581767dfaf7ce5fbf8a36e2435bd3b 236 SUPERFAMILY SSF52540 2 232 1.05E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_07250 86581767dfaf7ce5fbf8a36e2435bd3b 236 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMK58_23860 75a54a84318f96770b10e6ba9aef5789 187 Hamap MF_01521 Probable manganese efflux pump MntP [mntP]. 1 184 23.1 T 11-10-2018 IPR022929 Putative manganese efflux pump MntP AMK58_23860 75a54a84318f96770b10e6ba9aef5789 187 Pfam PF02659 Putative manganese efflux pump 33 181 1.3E-44 T 11-10-2018 IPR003810 Putative manganese efflux pump AMK58_10175 037943db9cbb0083f8e8e0eef9531280 98 Pfam PF10135 Rod binding protein 42 87 1.3E-13 T 11-10-2018 IPR019301 Flagellar protein FlgJ, N-terminal AMK58_01250 930421d9996012bc7a351df540f88094 271 SUPERFAMILY SSF56300 11 256 1.14E-15 T 11-10-2018 AMK58_01250 930421d9996012bc7a351df540f88094 271 Gene3D G3DSA:3.60.21.10 4 261 2.2E-19 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like AMK58_18405 4816324dd06d4a1dcf2ba0c7033f052e 319 Pfam PF02470 MlaD protein 39 115 4.9E-17 T 11-10-2018 IPR003399 Mce/MlaD AMK58_20540 6c7df553361fe35d573854e3f1856948 493 Pfam PF13440 Polysaccharide biosynthesis protein 34 272 2.7E-9 T 11-10-2018 AMK58_09065 b2350ebf090c19aa5aa8890bcd516d2b 413 Pfam PF03600 Citrate transporter 26 336 9.8E-26 T 11-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 AMK58_12830 cbd3b69c4e850b7700148878a027f720 335 Pfam PF03186 CobD/Cbib protein 24 313 8.1E-64 T 11-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 AMK58_12830 cbd3b69c4e850b7700148878a027f720 335 Hamap MF_00024 Cobalamin biosynthesis protein CbiB [cbiB]. 1 334 63.439 T 11-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 AMK58_25305 410053598af032560586ffd46121f8d0 433 Pfam PF02120 Flagellar hook-length control protein FliK 307 382 2.2E-17 T 11-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal AMK58_25305 410053598af032560586ffd46121f8d0 433 Gene3D G3DSA:3.30.750.140 281 386 5.5E-10 T 11-10-2018 IPR038610 FliK-like, C-terminal domain superfamily AMK58_06300 02d9f60b241a3702b4fb4794063f55dc 192 SMART SM00935 11 179 1.7E-37 T 11-10-2018 IPR005632 Chaperone protein Skp GO:0051082 AMK58_06300 02d9f60b241a3702b4fb4794063f55dc 192 SUPERFAMILY SSF111384 39 179 3.27E-26 T 11-10-2018 AMK58_06300 02d9f60b241a3702b4fb4794063f55dc 192 Pfam PF03938 Outer membrane protein (OmpH-like) 14 177 5.6E-28 T 11-10-2018 IPR005632 Chaperone protein Skp GO:0051082 AMK58_06300 02d9f60b241a3702b4fb4794063f55dc 192 Gene3D G3DSA:3.30.910.20 31 192 4.6E-31 T 11-10-2018 IPR024930 Skp domain superfamily AMK58_28535 2116bd02457eef932e7efb8d4b548877 176 Pfam PF13610 DDE domain 100 153 1.6E-6 T 11-10-2018 IPR032874 DDE domain AMK58_05075 b741ce5107071cf7549cb8a95ee0e17d 370 Pfam PF00583 Acetyltransferase (GNAT) family 54 148 4.7E-15 T 11-10-2018 IPR000182 GNAT domain AMK58_05075 b741ce5107071cf7549cb8a95ee0e17d 370 Pfam PF00583 Acetyltransferase (GNAT) family 248 340 7.1E-11 T 11-10-2018 IPR000182 GNAT domain AMK58_05075 b741ce5107071cf7549cb8a95ee0e17d 370 Gene3D G3DSA:3.40.630.30 200 368 2.5E-31 T 11-10-2018 AMK58_05075 b741ce5107071cf7549cb8a95ee0e17d 370 Gene3D G3DSA:3.40.630.30 9 175 3.4E-30 T 11-10-2018 AMK58_05075 b741ce5107071cf7549cb8a95ee0e17d 370 SUPERFAMILY SSF55729 201 365 1.27E-27 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_05075 b741ce5107071cf7549cb8a95ee0e17d 370 SUPERFAMILY SSF55729 9 174 7.89E-28 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_02925 0e42a03ed4470a1476e76716da0dd50e 313 Pfam PF05598 Transposase domain (DUF772) 55 119 9.6E-21 T 11-10-2018 IPR008490 Transposase InsH, N-terminal AMK58_02080 408eeb2788002e9846f92a93354c1838 65 Pfam PF07896 Protein of unknown function (DUF1674) 19 65 3.7E-15 T 11-10-2018 IPR012875 Protein of unknown function DUF1674 AMK58_18305 3f3c6f39d25c8384a7c476c6d4037e38 97 Gene3D G3DSA:1.10.1200.10 3 83 8.5E-8 T 11-10-2018 IPR036736 ACP-like superfamily AMK58_18305 3f3c6f39d25c8384a7c476c6d4037e38 97 SUPERFAMILY SSF47336 15 82 3.01E-8 T 11-10-2018 IPR036736 ACP-like superfamily AMK58_18305 3f3c6f39d25c8384a7c476c6d4037e38 97 Pfam PF00550 Phosphopantetheine attachment site 16 77 1.0E-5 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain AMK58_09975 88cfce56302d6262f62058d27e68a7df 397 Pfam PF05762 VWA domain containing CoxE-like protein 191 279 1.5E-9 T 11-10-2018 IPR008912 Uncharacterised protein family CoxE-like AMK58_09495 a6749da29d3cd0dfa5f3c9ac25cc9912 124 Pfam PF06170 Protein of unknown function (DUF983) 28 112 1.5E-31 T 11-10-2018 IPR009325 Protein of unknown function DUF983 AMK58_02340 f5975342bcd6ba9cef1b526bf9db44a8 219 Pfam PF09335 SNARE associated Golgi protein 51 172 6.4E-18 T 11-10-2018 IPR032816 SNARE associated Golgi protein AMK58_25915 1667517082ad75b0989d24890800aac5 251 Gene3D G3DSA:3.40.50.12500 5 251 1.1E-87 T 11-10-2018 AMK58_25915 1667517082ad75b0989d24890800aac5 251 Hamap MF_00943 Maleate isomerase [maiA]. 6 251 50.65 T 11-10-2018 IPR028615 Maleate isomerase GO:0050076 KEGG: 00650+5.2.1.1|KEGG: 00760+5.2.1.1|MetaCyc: PWY-5033|MetaCyc: PWY-6993|MetaCyc: PWY-7128|MetaCyc: PWY-722 AMK58_25915 1667517082ad75b0989d24890800aac5 251 PIRSF PIRSF015736 1 251 4.9E-69 T 11-10-2018 IPR026286 Maleate isomerase/Arylmalonate decarboxylase AMK58_25600 fe7295cee258d38a4947ccc22fbbe1cb 138 Pfam PF11162 Protein of unknown function (DUF2946) 21 130 5.2E-7 T 11-10-2018 IPR021333 Protein of unknown function DUF2946 AMK58_03280 bbba4c43512566f93693faed215484bd 235 SUPERFAMILY SSF81342 14 200 6.2E-32 T 11-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 AMK58_03280 bbba4c43512566f93693faed215484bd 235 Gene3D G3DSA:1.20.950.20 7 184 1.3E-16 T 11-10-2018 AMK58_03280 bbba4c43512566f93693faed215484bd 235 Pfam PF01292 Prokaryotic cytochrome b561 18 196 3.4E-20 T 11-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 AMK58_04060 6b8069aeb8965bf7f8e2f1961235c8bc 247 Gene3D G3DSA:3.40.50.150 6 242 4.9E-61 T 11-10-2018 AMK58_04060 6b8069aeb8965bf7f8e2f1961235c8bc 247 SUPERFAMILY SSF53335 15 209 1.03E-35 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMK58_04060 6b8069aeb8965bf7f8e2f1961235c8bc 247 Pfam PF05175 Methyltransferase small domain 31 168 9.3E-13 T 11-10-2018 IPR007848 Methyltransferase small domain GO:0008168 AMK58_14190 5febfd657b55eca902ed8d632dcb43ff 396 PIRSF PIRSF028704 1 394 1.4E-67 T 11-10-2018 IPR014550 Uncharacterised conserved protein UCP028704, OpgC AMK58_14190 5febfd657b55eca902ed8d632dcb43ff 396 Pfam PF10129 OpgC protein 3 379 2.0E-70 T 11-10-2018 IPR014550 Uncharacterised conserved protein UCP028704, OpgC AMK58_24385 c1365f3a016e1c3c29fcc50df73723c1 172 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 20 148 7.8E-29 T 11-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ AMK58_12515 32b17f639e926749a36318fcb2c79de4 163 Gene3D G3DSA:1.10.3990.20 20 111 3.2E-14 T 11-10-2018 IPR038268 Ribbon-helix-helix domain superfamily AMK58_12515 32b17f639e926749a36318fcb2c79de4 163 Pfam PF13467 Ribbon-helix-helix domain 22 97 4.4E-27 T 11-10-2018 IPR027373 Ribbon-helix-helix domain AMK58_16825 bd415f03bead5c56dd9f246fe71dd401 97 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 48 9.3E-22 T 11-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 AMK58_16825 bd415f03bead5c56dd9f246fe71dd401 97 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 79 21.175 T 11-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 AMK58_16825 bd415f03bead5c56dd9f246fe71dd401 97 Pfam PF02416 mttA/Hcf106 family 5 49 1.4E-14 T 11-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 AMK58_11080 9e4407817448de5c122b7cbed40840ca 295 PIRSF PIRSF015582 1 290 9.1E-80 T 11-10-2018 IPR011206 Citrate lyase beta subunit-like AMK58_11080 9e4407817448de5c122b7cbed40840ca 295 SUPERFAMILY SSF51621 6 233 9.42E-62 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMK58_11080 9e4407817448de5c122b7cbed40840ca 295 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 7 222 1.2E-40 T 11-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 AMK58_11080 9e4407817448de5c122b7cbed40840ca 295 Gene3D G3DSA:3.20.20.60 2 284 1.7E-90 T 11-10-2018 AMK58_14440 3a0dfac734e0bfe207a575a7cc9729ab 194 Gene3D G3DSA:3.40.1050.10 41 183 1.5E-6 T 11-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 AMK58_14440 3a0dfac734e0bfe207a575a7cc9729ab 194 SUPERFAMILY SSF53056 58 156 2.09E-11 T 11-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 AMK58_22670 c94939d4cdaecbb737fd8663a1265891 187 Gene3D G3DSA:3.40.190.10 70 179 2.6E-15 T 11-10-2018 AMK58_22670 c94939d4cdaecbb737fd8663a1265891 187 SUPERFAMILY SSF53850 71 160 5.43E-8 T 11-10-2018 AMK58_18730 66a763e7d2cfa4b2a32b3f3d71fe127a 222 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 8 216 5.8E-74 T 11-10-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 AMK58_18730 66a763e7d2cfa4b2a32b3f3d71fe127a 222 Gene3D G3DSA:1.10.3720.10 1 218 6.2E-53 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_18730 66a763e7d2cfa4b2a32b3f3d71fe127a 222 SUPERFAMILY SSF161098 3 213 6.28E-46 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_18730 66a763e7d2cfa4b2a32b3f3d71fe127a 222 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 24 209 1.9E-18 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_27875 49a057a1855de20fad16a2b8a541badc 1306 Pfam PF02514 CobN/Magnesium Chelatase 133 1193 8.2E-287 T 11-10-2018 IPR003672 CobN/magnesium chelatase GO:0009058 AMK58_08830 7ee06f7acde60b42786c15f4b9949df4 168 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 15 159 27.949 T 11-10-2018 IPR003791 Protein of unknown function UPF0178 AMK58_08830 7ee06f7acde60b42786c15f4b9949df4 168 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 29 157 1.5E-43 T 11-10-2018 IPR003791 Protein of unknown function UPF0178 AMK58_13570 cdddbbc2617ada692ec09efe20525215 217 Pfam PF03923 Uncharacterized lipoprotein 38 197 2.2E-22 T 11-10-2018 IPR005619 Uncharacterised protein family, YajG AMK58_05170 7bbe031964e2c6f5439b7662c6ffde25 205 Pfam PF06242 Protein of unknown function (DUF1013) 34 169 4.4E-63 T 11-10-2018 IPR010421 Protein of unknown function DUF1013 AMK58_19585 74869fff69ec7417fdb82f7bed040977 60 Pfam PF12073 Protein of unknown function (DUF3553) 5 53 1.1E-27 T 11-10-2018 IPR021938 Protein of unknown function DUF3553 AMK58_28840 85d9e45b6a330739dcaa8d78f383b38e 153 Pfam PF13586 Transposase DDE domain 80 139 1.8E-6 T 11-10-2018 IPR025668 Transposase DDE domain AMK58_10110 5130c9c1313b247c3e0eb9f12673f5a3 112 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 62 82 4.5E-10 T 11-10-2018 IPR019626 Stress-induced protein, KGG, repeat AMK58_10110 5130c9c1313b247c3e0eb9f12673f5a3 112 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 40 60 4.5E-10 T 11-10-2018 IPR019626 Stress-induced protein, KGG, repeat AMK58_10110 5130c9c1313b247c3e0eb9f12673f5a3 112 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 84 104 1.7E-10 T 11-10-2018 IPR019626 Stress-induced protein, KGG, repeat AMK58_10110 5130c9c1313b247c3e0eb9f12673f5a3 112 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 18 38 2.4E-9 T 11-10-2018 IPR019626 Stress-induced protein, KGG, repeat AMK58_19255 5dc73a990185027ae30d1e7ac86687e2 384 Pfam PF03916 Polysulphide reductase, NrfD 47 329 4.1E-11 T 11-10-2018 IPR005614 NrfD family AMK58_17785 5a097d65e95626c5a95ccae548dff2aa 271 Hamap MF_00905 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA [cpdA]. 1 256 36.452 T 11-10-2018 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA GO:0004115 KEGG: 00230+3.1.4.53 AMK58_17785 5a097d65e95626c5a95ccae548dff2aa 271 Pfam PF00149 Calcineurin-like phosphoesterase 2 198 1.4E-18 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AMK58_17785 5a097d65e95626c5a95ccae548dff2aa 271 SUPERFAMILY SSF56300 1 253 3.41E-54 T 11-10-2018 AMK58_17785 5a097d65e95626c5a95ccae548dff2aa 271 Gene3D G3DSA:3.60.21.40 1 241 1.1E-80 T 11-10-2018 AMK58_17785 5a097d65e95626c5a95ccae548dff2aa 271 Gene3D G3DSA:3.30.750.180 105 232 1.1E-80 T 11-10-2018 AMK58_19970 e8ad8c21d107f73c563e097cf4e50392 396 Gene3D G3DSA:3.30.470.20 110 369 1.8E-15 T 11-10-2018 AMK58_19970 e8ad8c21d107f73c563e097cf4e50392 396 SUPERFAMILY SSF56059 117 317 4.52E-22 T 11-10-2018 AMK58_18485 bef9ecd6d775148dfd6085f1bf37ddea 96 Gene3D G3DSA:1.10.10.60 12 93 2.3E-6 T 11-10-2018 AMK58_18485 bef9ecd6d775148dfd6085f1bf37ddea 96 Pfam PF01527 Transposase 5 67 2.9E-10 T 11-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMK58_18485 bef9ecd6d775148dfd6085f1bf37ddea 96 SUPERFAMILY SSF46689 5 57 5.38E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_24025 8d36212be4595e04604e5e9473f36e64 391 Pfam PF01757 Acyltransferase family 26 352 6.9E-15 T 11-10-2018 IPR002656 Acyltransferase 3 GO:0016747 AMK58_12575 79bb290c24c7737738c12a69dd3eb5d4 218 Gene3D G3DSA:3.20.20.70 5 218 6.5E-62 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMK58_12575 79bb290c24c7737738c12a69dd3eb5d4 218 SUPERFAMILY SSF51366 8 215 1.73E-55 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AMK58_12575 79bb290c24c7737738c12a69dd3eb5d4 218 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 9 213 6.1E-43 T 11-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 AMK58_12575 79bb290c24c7737738c12a69dd3eb5d4 218 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 7 218 37.925 T 11-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 AMK58_06705 a7b4da54b3cc5b4ce27c126eb1a5c33c 268 SUPERFAMILY SSF52096 15 267 2.75E-81 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMK58_06705 a7b4da54b3cc5b4ce27c126eb1a5c33c 268 Gene3D G3DSA:3.90.226.10 13 210 3.7E-67 T 11-10-2018 AMK58_06705 a7b4da54b3cc5b4ce27c126eb1a5c33c 268 Gene3D G3DSA:1.10.12.10 213 268 1.6E-24 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal AMK58_06705 a7b4da54b3cc5b4ce27c126eb1a5c33c 268 Pfam PF00378 Enoyl-CoA hydratase/isomerase 20 267 4.5E-60 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMK58_18500 f674e938b1595f8d5d1703ab564001f2 108 Pfam PF00872 Transposase, Mutator family 14 100 2.8E-19 T 11-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 AMK58_14750 3c2c6c56f6ca18a713fdc4ba935b364e 80 SMART SM00834 1 47 0.0016 T 11-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain AMK58_14750 3c2c6c56f6ca18a713fdc4ba935b364e 80 Pfam PF06676 Protein of unknown function (DUF1178) 1 62 5.0E-19 T 11-10-2018 IPR009562 Protein of unknown function DUF1178 AMK58_17115 c710effcaf872116fafe34733a50bab7 162 Pfam PF09411 Lipid A 3-O-deacylase (PagL) 69 129 1.6E-5 T 11-10-2018 IPR018550 Lipid A 3-O-deacylase-related AMK58_14015 375287d89a020febbbcbfb9bb99a4b8d 1104 Pfam PF14331 ImcF-related N-terminal domain 180 413 4.6E-26 T 11-10-2018 IPR025743 ImcF-related, N-terminal domain AMK58_28810 68a644a29abfb1e311152ac5b55d0601 345 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 32 319 1.0E-36 T 11-10-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD AMK58_02950 65516abbebe5b14706bfdef42461b81f 145 SUPERFAMILY SSF50346 54 137 3.77E-9 T 11-10-2018 IPR011033 PRC-barrel-like superfamily AMK58_02950 65516abbebe5b14706bfdef42461b81f 145 Pfam PF05239 PRC-barrel domain 55 123 4.1E-7 T 11-10-2018 IPR027275 PRC-barrel domain AMK58_02950 65516abbebe5b14706bfdef42461b81f 145 Gene3D G3DSA:2.30.30.240 35 129 1.6E-13 T 11-10-2018 AMK58_19920 62ee595a7e9b93f5ab0fb5e071ed1faf 559 Gene3D G3DSA:1.20.58.220 337 431 8.9E-12 T 11-10-2018 IPR038078 PhoU-like domain superfamily AMK58_19920 62ee595a7e9b93f5ab0fb5e071ed1faf 559 Gene3D G3DSA:1.20.58.220 444 538 2.0E-7 T 11-10-2018 IPR038078 PhoU-like domain superfamily AMK58_19920 62ee595a7e9b93f5ab0fb5e071ed1faf 559 Pfam PF02690 Na+/Pi-cotransporter 164 261 3.9E-10 T 11-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 AMK58_19920 62ee595a7e9b93f5ab0fb5e071ed1faf 559 Pfam PF02690 Na+/Pi-cotransporter 16 151 1.7E-28 T 11-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 AMK58_19920 62ee595a7e9b93f5ab0fb5e071ed1faf 559 Pfam PF01895 PhoU domain 449 531 6.6E-6 T 11-10-2018 IPR026022 PhoU domain AMK58_19920 62ee595a7e9b93f5ab0fb5e071ed1faf 559 Pfam PF01895 PhoU domain 343 422 1.6E-10 T 11-10-2018 IPR026022 PhoU domain AMK58_19920 62ee595a7e9b93f5ab0fb5e071ed1faf 559 SUPERFAMILY SSF109755 323 534 1.05E-34 T 11-10-2018 AMK58_00325 40003c55e922619745acad7547f45005 179 Pfam PF12100 Domain of unknown function (DUF3576) 72 171 8.1E-44 T 11-10-2018 IPR021959 Protein of unknown function DUF3576 AMK58_17045 0aa6cc174c1636df15c6b9cb3b4b621d 142 Pfam PF09361 Phasin protein 29 128 2.1E-21 T 11-10-2018 IPR018968 Phasin AMK58_17045 0aa6cc174c1636df15c6b9cb3b4b621d 142 TIGRFAM TIGR01841 phasin: phasin family protein 49 136 1.1E-22 T 11-10-2018 IPR010127 Phasin, subfamily 1 AMK58_03960 0ff0f671c71a7522b86d3e04c25bda54 241 ProDom PD201674 DIVISION CELL RP568 MEMBRANE TRANSMEMBRANE FTSL 20 83 0.006 T 11-10-2018 AMK58_28865 1bb064ed6bd31efc7140253bf30013f0 259 Pfam PF01061 ABC-2 type transporter 9 220 2.7E-31 T 11-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 AMK58_28865 1bb064ed6bd31efc7140253bf30013f0 259 PIRSF PIRSF006648 3 253 1.3E-18 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMK58_28865 1bb064ed6bd31efc7140253bf30013f0 259 PRINTS PR00164 ABC-2 type transport system membrane protein signature 197 216 1.9E-7 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMK58_28865 1bb064ed6bd31efc7140253bf30013f0 259 PRINTS PR00164 ABC-2 type transport system membrane protein signature 140 164 1.9E-7 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMK58_28865 1bb064ed6bd31efc7140253bf30013f0 259 PRINTS PR00164 ABC-2 type transport system membrane protein signature 177 196 1.9E-7 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMK58_28865 1bb064ed6bd31efc7140253bf30013f0 259 PRINTS PR00164 ABC-2 type transport system membrane protein signature 28 49 1.9E-7 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMK58_09350 f3a063e65a3742403941b3032060b448 268 Pfam PF01925 Sulfite exporter TauE/SafE 12 247 1.3E-44 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 AMK58_02050 c690ad1486dd204850d1e6fc6b371781 94 Gene3D G3DSA:3.30.70.1060 1 93 1.7E-34 T 11-10-2018 AMK58_02050 c690ad1486dd204850d1e6fc6b371781 94 SUPERFAMILY SSF54909 1 90 4.56E-24 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel AMK58_02050 c690ad1486dd204850d1e6fc6b371781 94 Pfam PF03795 YCII-related domain 1 88 1.6E-22 T 11-10-2018 IPR005545 YCII-related AMK58_12355 df7b9d510d485be0ac601617a501e6ec 332 SUPERFAMILY SSF51735 2 318 1.26E-84 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMK58_12355 df7b9d510d485be0ac601617a501e6ec 332 Gene3D G3DSA:3.40.50.720 2 319 8.6E-81 T 11-10-2018 AMK58_12355 df7b9d510d485be0ac601617a501e6ec 332 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 146 0.0098 T 11-10-2018 AMK58_12355 df7b9d510d485be0ac601617a501e6ec 332 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 250 2.6E-48 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMK58_05370 f886e73948088df87fa7af5ba40b67a6 82 Pfam PF10073 Uncharacterized protein conserved in bacteria (DUF2312) 8 79 2.1E-36 T 11-10-2018 IPR018753 Azospirillum phage Cd, Gp10 AMK58_05370 f886e73948088df87fa7af5ba40b67a6 82 Hamap MF_00797 UPF0335 protein . 3 80 23.145 T 11-10-2018 IPR018753 Azospirillum phage Cd, Gp10 AMK58_23205 676daf1810be2a095edcf648a65add4b 357 Pfam PF02653 Branched-chain amino acid transport system / permease component 51 332 1.6E-39 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_12150 524c85a4a6a618ea3821a89901dec10d 491 Pfam PF02646 RmuC family 159 446 1.2E-92 T 11-10-2018 IPR003798 DNA recombination RmuC AMK58_27105 ea117cc65e3befa74805442e94ecb7d4 232 Pfam PF07298 NnrU protein 10 229 1.4E-55 T 11-10-2018 IPR009915 NnrU domain AMK58_25825 4161286b0e633aa8a03f5f472c31cd7d 397 Gene3D G3DSA:3.40.710.10 7 392 9.3E-112 T 11-10-2018 AMK58_25825 4161286b0e633aa8a03f5f472c31cd7d 397 Pfam PF00144 Beta-lactamase 23 380 2.6E-72 T 11-10-2018 IPR001466 Beta-lactamase-related AMK58_25825 4161286b0e633aa8a03f5f472c31cd7d 397 SUPERFAMILY SSF56601 17 390 2.49E-89 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMK58_11965 93d63e0a85cdeffd126a94bbfe5a3094 92 Pfam PF10387 Protein of unknown function (DUF2442) 13 81 1.5E-22 T 11-10-2018 IPR018841 Protein of unknown function DUF2442 AMK58_11965 93d63e0a85cdeffd126a94bbfe5a3094 92 Gene3D G3DSA:3.30.2020.20 11 76 3.1E-17 T 11-10-2018 AMK58_14200 27d69cd4076b8a915aa8fcdd79bdfe9f 167 Gene3D G3DSA:1.10.10.10 95 167 5.0E-7 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMK58_14200 27d69cd4076b8a915aa8fcdd79bdfe9f 167 SUPERFAMILY SSF46785 105 163 6.94E-8 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_18540 046887fc2f017cb5e2b71148da2e7277 172 Gene3D G3DSA:3.40.630.30 79 170 1.9E-17 T 11-10-2018 AMK58_18540 046887fc2f017cb5e2b71148da2e7277 172 Pfam PF00583 Acetyltransferase (GNAT) family 33 155 4.9E-10 T 11-10-2018 IPR000182 GNAT domain AMK58_18540 046887fc2f017cb5e2b71148da2e7277 172 SUPERFAMILY SSF55729 2 157 1.36E-16 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMK58_23915 6031cb3ac62d8e3b4537c4cce935e6bd 170 Pfam PF14196 L-2-amino-thiazoline-4-carboxylic acid hydrolase 23 160 1.5E-22 T 11-10-2018 IPR026002 L-2-amino-thiazoline-4-carboxylic acid hydrolase AMK58_07925 12d5aa37b2c41f2be62842f0ad937537 211 Pfam PF01810 LysE type translocator 15 207 3.6E-33 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMK58_07925 12d5aa37b2c41f2be62842f0ad937537 211 PIRSF PIRSF006324 1 210 1.1E-57 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMK58_28690 a5430db07bce59d1b2d3e7384e9ab733 224 Pfam PF13628 Domain of unknown function (DUF4142) 44 199 4.6E-20 T 11-10-2018 IPR025419 Domain of unknown function DUF4142 AMK58_28690 a5430db07bce59d1b2d3e7384e9ab733 224 Gene3D G3DSA:1.20.1260.10 35 204 1.6E-7 T 11-10-2018 IPR012347 Ferritin-like AMK58_28070 0efa6752f9ec0cfcca22af6e68065911 141 Gene3D G3DSA:3.40.50.2300 4 122 2.1E-9 T 11-10-2018 AMK58_28070 0efa6752f9ec0cfcca22af6e68065911 141 SUPERFAMILY SSF52172 4 119 1.42E-9 T 11-10-2018 IPR011006 CheY-like superfamily AMK58_09160 2aa67c9b2578e6d8a9db92aa992d0a91 180 SUPERFAMILY SSF57997 24 88 1.37E-5 T 11-10-2018 AMK58_20515 a31a27bf2bbf8435e343886f510aac23 261 TIGRFAM TIGR00696 wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family 64 229 1.2E-21 T 11-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 AMK58_20515 a31a27bf2bbf8435e343886f510aac23 261 Pfam PF03808 Glycosyl transferase WecB/TagA/CpsF family 66 227 3.1E-42 T 11-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 AMK58_15690 8d5d61cea73babca9efaef9faa20351e 426 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 6 415 7.4E-95 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit AMK58_15690 8d5d61cea73babca9efaef9faa20351e 426 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 15 421 2.0E-115 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 AMK58_15690 8d5d61cea73babca9efaef9faa20351e 426 PIRSF PIRSF006066 1 426 4.2E-110 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 AMK58_05815 d722cd3879d54d1a9aaf960e88934c99 192 Pfam PF09335 SNARE associated Golgi protein 52 153 8.8E-11 T 11-10-2018 IPR032816 SNARE associated Golgi protein AMK58_19755 852280315777c42992705fcbe4b19205 150 Pfam PF04657 Putative inner membrane exporter, YdcZ 10 147 4.2E-36 T 11-10-2018 IPR006750 Putative inner membrane exporter, YdcZ AMK58_25390 f7d2a226a44ed1cd5e7d6f1114ea1ed9 210 Pfam PF09998 Uncharacterized protein conserved in bacteria (DUF2239) 10 194 4.9E-74 T 11-10-2018 IPR018715 Protein of unknown function DUF2239 AMK58_23530 c5e147dde3af821b7cc7261631a25378 448 Pfam PF13343 Bacterial extracellular solute-binding protein 81 314 7.3E-32 T 11-10-2018 AMK58_23530 c5e147dde3af821b7cc7261631a25378 448 Gene3D G3DSA:3.40.190.10 136 252 1.5E-53 T 11-10-2018 AMK58_23530 c5e147dde3af821b7cc7261631a25378 448 SUPERFAMILY SSF53850 30 325 4.9E-52 T 11-10-2018 AMK58_23530 c5e147dde3af821b7cc7261631a25378 448 Gene3D G3DSA:3.40.190.10 35 303 1.5E-53 T 11-10-2018 AMK58_00230 e9a977a1a7cd4231c0436dc7a71248cb 272 SUPERFAMILY SSF88713 87 245 1.65E-5 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMK58_05185 c52edf839f3eb784c5e97a0179fbc998 279 Pfam PF09955 Predicted integral membrane protein (DUF2189) 89 212 1.2E-38 T 11-10-2018 IPR018692 Predicted integral membrane protein DUF2189 AMK58_03140 f89167086670cba3c7541e841427ad3f 306 Gene3D G3DSA:3.90.1580.10 1 305 5.5E-104 T 11-10-2018 AMK58_03140 f89167086670cba3c7541e841427ad3f 306 SUPERFAMILY SSF56436 1 303 2.04E-91 T 11-10-2018 IPR016187 C-type lectin fold AMK58_03140 f89167086670cba3c7541e841427ad3f 306 Pfam PF03781 Sulfatase-modifying factor enzyme 1 1 301 5.7E-86 T 11-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 AMK58_28570 021d73ad96d035e060ac5d2a58f7b4a1 170 Gene3D G3DSA:3.30.70.3460 27 166 6.9E-37 T 11-10-2018 AMK58_17510 49bd9889dbb544545874c5b1adebd2e1 220 ProDom PD037531 MEMBRANE HYDROGENASE SUBUNIT COMPONENT HYDROGENASE-4 E OXIDOREDUCTASE PRECURSOR SIGNAL 1.-.-.- 17 199 1.0E-44 T 11-10-2018 AMK58_25420 8b52759132363ea9ef0844b3ea19b4eb 90 Pfam PF11747 Killing trait 11 78 2.7E-30 T 11-10-2018 IPR021070 Killing trait, RebB AMK58_02280 a30f2d5fa7f732431730ab08f43b7599 144 SUPERFAMILY SSF54593 12 136 2.28E-23 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMK58_02280 a30f2d5fa7f732431730ab08f43b7599 144 Gene3D G3DSA:3.10.180.10 4 142 2.1E-36 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMK58_02280 a30f2d5fa7f732431730ab08f43b7599 144 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 13 132 4.9E-9 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMK58_07315 d4a9992c23523c56469a42877c3b4eb3 228 Pfam PF02674 Colicin V production protein 10 151 2.6E-29 T 11-10-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 AMK58_25275 9311f69f5d1f088640ea6e83f8bb7d5b 243 Pfam PF02108 Flagellar assembly protein FliH 85 203 1.0E-6 T 11-10-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE AMK58_07505 acd2b028cc354967dcd55327f8078162 188 Pfam PF09361 Phasin protein 80 176 1.4E-18 T 11-10-2018 IPR018968 Phasin AMK58_24635 384ff59f121eca5d6064a13f907fbe71 342 Pfam PF05145 Transition state regulatory protein AbrB 31 335 3.6E-71 T 11-10-2018 IPR007820 AbrB family GO:0010468|GO:0016021 AMK58_24635 384ff59f121eca5d6064a13f907fbe71 342 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 9 162 3.3E-30 T 11-10-2018 IPR017516 AbrB duplication AMK58_24635 384ff59f121eca5d6064a13f907fbe71 342 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 185 332 5.6E-31 T 11-10-2018 IPR017516 AbrB duplication AMK58_24635 384ff59f121eca5d6064a13f907fbe71 342 PIRSF PIRSF038991 1 338 4.7E-69 T 11-10-2018 IPR007820 AbrB family GO:0010468|GO:0016021 AMK58_00990 582836e5bd0c4b0a23c67698bc4bc040 53 Pfam PF05545 Cbb3-type cytochrome oxidase component FixQ 1 49 1.9E-18 T 11-10-2018 IPR008621 Cbb3-type cytochrome oxidase component AMK58_07155 6ab11cc184ea058ac64c9da56403b963 276 Pfam PF00535 Glycosyl transferase family 2 12 126 1.8E-5 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMK58_07155 6ab11cc184ea058ac64c9da56403b963 276 SUPERFAMILY SSF53448 9 224 2.65E-23 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_07155 6ab11cc184ea058ac64c9da56403b963 276 Gene3D G3DSA:3.90.550.10 9 218 1.6E-12 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMK58_02965 319ba6f1a73b654bec59f2ff8a6e13ef 189 Pfam PF17212 Tail tubular protein 11 168 1.6E-5 T 11-10-2018 IPR033767 Tail tubular protein Gp11 AMK58_15960 c1fc2d76eaf7e73c4b0fb2aa07a7f9de 485 Pfam PF09839 Uncharacterized protein conserved in bacteria (DUF2066) 86 271 5.2E-15 T 11-10-2018 IPR018642 Protein of unknown function DUF2066 AMK58_25425 c7a85d4ecbc2de716e013baebfb5051e 77 Pfam PF11747 Killing trait 12 75 1.0E-18 T 11-10-2018 IPR021070 Killing trait, RebB AMK58_18545 f8d93396dd658654429b6b9e8bed6155 82 Pfam PF06906 Protein of unknown function (DUF1272) 1 57 3.1E-30 T 11-10-2018 IPR010696 Protein of unknown function DUF1272 AMK58_16175 e8111a76d3189a2aae34e0fbfee9a9aa 279 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 275 1.8E-21 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_16175 e8111a76d3189a2aae34e0fbfee9a9aa 279 SUPERFAMILY SSF161098 69 256 3.53E-22 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_16175 e8111a76d3189a2aae34e0fbfee9a9aa 279 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 5 51 6.1E-8 T 11-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AMK58_16175 e8111a76d3189a2aae34e0fbfee9a9aa 279 Gene3D G3DSA:1.10.3720.10 64 268 2.0E-14 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_26195 6be5a330df1bee21e80deaf85915cc3d 145 Pfam PF07378 Flagellar protein FlbT 3 127 5.4E-42 T 11-10-2018 IPR009967 Flagellum biosynthesis repressor FlbT GO:0006402|GO:0048027|GO:1902209 AMK58_10520 1e94f291315f8b5e6f08d9b76d3dc152 613 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 278 7.1E-41 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_10520 1e94f291315f8b5e6f08d9b76d3dc152 613 Pfam PF02653 Branched-chain amino acid transport system / permease component 334 591 7.5E-36 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_12685 c5387a6ddd4d3f51b8c559a3e63f4eba 141 Pfam PF04138 GtrA-like protein 17 132 6.5E-28 T 11-10-2018 IPR007267 GtrA-like protein GO:0000271|GO:0016021 AMK58_03190 d2b661c9e6138adef3de6c4f219abc24 292 Pfam PF02653 Branched-chain amino acid transport system / permease component 7 276 1.6E-42 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_11620 ead6089c7139ba06786c07bcb90023be 339 Pfam PF02653 Branched-chain amino acid transport system / permease component 41 322 3.9E-39 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_00475 cae3cb6142cf2da0f7693977e710c770 280 Pfam PF06724 Domain of Unknown Function (DUF1206) 196 264 3.7E-19 T 11-10-2018 IPR009597 Domain of unknown function DUF1206 AMK58_00475 cae3cb6142cf2da0f7693977e710c770 280 Pfam PF06724 Domain of Unknown Function (DUF1206) 20 86 1.5E-20 T 11-10-2018 IPR009597 Domain of unknown function DUF1206 AMK58_00475 cae3cb6142cf2da0f7693977e710c770 280 Pfam PF06724 Domain of Unknown Function (DUF1206) 102 173 5.9E-15 T 11-10-2018 IPR009597 Domain of unknown function DUF1206 AMK58_18955 a1e3b248398314ea88fcd287288f9cd3 230 Pfam PF09929 Putative PD-(D/E)XK phosphodiesterase (DUF2161) 110 218 2.4E-40 T 11-10-2018 IPR018679 Putative PD-(D/E)XK phosphodiesterase (DUF2161) AMK58_21250 fb3aa08f586db63c85b3a9c225e5a721 187 Pfam PF11748 Protein of unknown function (DUF3306) 7 110 5.5E-24 T 11-10-2018 IPR021735 Protein of unknown function DUF3306 AMK58_05900 dd339eba43eba8cfdc08ba40c6800c07 310 Pfam PF02653 Branched-chain amino acid transport system / permease component 12 284 1.9E-33 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_24115 d17b1d60a84288acaeff14f1382712ed 637 Gene3D G3DSA:3.40.50.1820 330 597 4.4E-21 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_24115 d17b1d60a84288acaeff14f1382712ed 637 SUPERFAMILY SSF53474 333 578 3.89E-15 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_12695 762e680bdeb9935ecb8144df6b5dfcc6 76 Pfam PF06620 Protein of unknown function (DUF1150) 40 76 1.1E-11 T 11-10-2018 IPR009531 Protein of unknown function DUF1150 AMK58_11195 a21293af0f7a9b031036081449360fbb 210 Pfam PF13723 Beta-ketoacyl synthase, N-terminal domain 8 206 1.9E-53 T 11-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal AMK58_02780 2768795287dc2f15dba6d0c77726da5f 149 Pfam PF13467 Ribbon-helix-helix domain 57 118 3.3E-17 T 11-10-2018 IPR027373 Ribbon-helix-helix domain AMK58_02780 2768795287dc2f15dba6d0c77726da5f 149 Gene3D G3DSA:1.10.3990.20 52 146 1.4E-11 T 11-10-2018 IPR038268 Ribbon-helix-helix domain superfamily AMK58_19530 a9ab9e4c15e4b50182b226b63590bfd7 145 Pfam PF02050 Flagellar FliJ protein 16 131 1.5E-13 T 11-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 AMK58_08430 f31bb5f5ca0c4cb04cb6cb0c02b3af90 135 Pfam PF01230 HIT domain 9 98 1.0E-14 T 11-10-2018 IPR001310 Histidine triad (HIT) protein AMK58_08430 f31bb5f5ca0c4cb04cb6cb0c02b3af90 135 Gene3D G3DSA:3.30.428.10 1 135 9.1E-42 T 11-10-2018 IPR036265 HIT-like superfamily AMK58_08430 f31bb5f5ca0c4cb04cb6cb0c02b3af90 135 SUPERFAMILY SSF54197 6 133 1.48E-33 T 11-10-2018 IPR036265 HIT-like superfamily AMK58_08430 f31bb5f5ca0c4cb04cb6cb0c02b3af90 135 PIRSF PIRSF000714 1 135 6.2E-50 T 11-10-2018 IPR026026 Histidine triad hydrolase, Hint-type AMK58_25000 febe6f22aa2d154dadd385901c295f0e 382 Gene3D G3DSA:3.20.20.80 16 351 9.8E-30 T 11-10-2018 AMK58_25000 febe6f22aa2d154dadd385901c295f0e 382 Pfam PF02449 Beta-galactosidase 37 91 3.6E-4 T 11-10-2018 IPR013529 Glycoside hydrolase, family 42, N-terminal GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMK58_25000 febe6f22aa2d154dadd385901c295f0e 382 SUPERFAMILY SSF51445 9 345 1.69E-54 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily AMK58_07670 3df2cfd596eac29f81637168045cb049 317 SUPERFAMILY SSF103481 185 279 2.75E-11 T 11-10-2018 AMK58_07670 3df2cfd596eac29f81637168045cb049 317 Pfam PF00892 EamA-like transporter family 3 136 1.2E-11 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_07670 3df2cfd596eac29f81637168045cb049 317 Pfam PF00892 EamA-like transporter family 145 274 1.0E-8 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_07670 3df2cfd596eac29f81637168045cb049 317 SUPERFAMILY SSF103481 54 140 2.75E-9 T 11-10-2018 AMK58_11600 8028f255410dbca50f6a939770800c15 304 Pfam PF02653 Branched-chain amino acid transport system / permease component 12 293 3.1E-37 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_17765 7f8e6465213cfbb0a714461e9d00bace 846 Pfam PF14403 Circularly permuted ATP-grasp type 2 92 468 1.1E-157 T 11-10-2018 IPR025841 Circularly permuted ATP-grasp type 2 AMK58_17765 7f8e6465213cfbb0a714461e9d00bace 846 Gene3D G3DSA:3.40.50.11290 230 326 3.8E-43 T 11-10-2018 AMK58_17765 7f8e6465213cfbb0a714461e9d00bace 846 Gene3D G3DSA:3.30.1490.270 363 422 8.2E-7 T 11-10-2018 AMK58_17765 7f8e6465213cfbb0a714461e9d00bace 846 SUPERFAMILY SSF56059 35 469 5.3E-25 T 11-10-2018 AMK58_17765 7f8e6465213cfbb0a714461e9d00bace 846 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 521 838 3.9E-70 T 11-10-2018 IPR007296 Domain of unknown function DUF403 AMK58_13105 543ca61d9dbcab3947731efb7c6e07ee 223 TIGRFAM TIGR02977 phageshock_pspA: phage shock protein A 1 218 1.3E-84 T 11-10-2018 IPR014319 Phage shock protein, PspA AMK58_13105 543ca61d9dbcab3947731efb7c6e07ee 223 Pfam PF04012 PspA/IM30 family 2 216 4.6E-38 T 11-10-2018 IPR007157 PspA/IM30 AMK58_29065 21ca4b55a50b5528efd6ef245ee40afe 481 Pfam PF09913 Predicted membrane protein (DUF2142) 30 426 3.1E-49 T 11-10-2018 IPR018674 Protein of unknown function DUF2142, membrane AMK58_26575 a7bfd252a3c9ba352efac7795ac0927a 203 Pfam PF09849 Uncharacterized protein conserved in bacteria (DUF2076) 1 186 2.1E-49 T 11-10-2018 IPR018648 Protein of unknown function DUF2076 AMK58_22355 a6aa9df5860d8577ac26d8fa5f3f7190 433 SUPERFAMILY SSF53706 18 321 5.38E-10 T 11-10-2018 AMK58_15200 96e26b2fa5a2a7183c98bf7724348ae0 73 Pfam PF13467 Ribbon-helix-helix domain 1 53 2.8E-17 T 11-10-2018 IPR027373 Ribbon-helix-helix domain AMK58_15200 96e26b2fa5a2a7183c98bf7724348ae0 73 Gene3D G3DSA:1.10.3990.20 1 73 9.2E-16 T 11-10-2018 IPR038268 Ribbon-helix-helix domain superfamily AMK58_25910 1fe4b81bb31f65cfb8884a829d20e567 269 Pfam PF12697 Alpha/beta hydrolase family 31 257 8.7E-19 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMK58_25910 1fe4b81bb31f65cfb8884a829d20e567 269 SUPERFAMILY SSF53474 12 266 1.71E-49 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_25910 1fe4b81bb31f65cfb8884a829d20e567 269 Gene3D G3DSA:3.40.50.1820 8 261 2.8E-71 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_03620 a7858adf8853d0c76f1b7c6922cd609b 175 Gene3D G3DSA:3.40.50.450 1 172 4.6E-31 T 11-10-2018 AMK58_03620 a7858adf8853d0c76f1b7c6922cd609b 175 SUPERFAMILY SSF102405 3 144 9.16E-23 T 11-10-2018 AMK58_14130 9f15d60df65c719b3dc5c025470a8bc4 531 Pfam PF03929 PepSY-associated TM region 4 361 3.3E-64 T 11-10-2018 IPR005625 PepSY-associated TM protein AMK58_22815 0749af38bc43ef450a6fb46d0d153405 358 Pfam PF10087 Uncharacterized protein conserved in bacteria (DUF2325) 254 344 4.6E-25 T 11-10-2018 IPR016772 Uncharacterised conserved protein UCP020408 AMK58_15695 6ed4f969e43d406924ba7eb504226271 167 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 23 151 9.5E-17 T 11-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ AMK58_12970 7ad94cc5a528accb8082135eefef38ae 258 Pfam PF14907 Uncharacterised nucleotidyltransferase 29 180 3.3E-7 T 11-10-2018 IPR039498 Uncharacterised nucleotidyltransferase AMK58_12970 7ad94cc5a528accb8082135eefef38ae 258 Gene3D G3DSA:3.30.460.40 13 139 1.1E-7 T 11-10-2018 AMK58_12970 7ad94cc5a528accb8082135eefef38ae 258 SUPERFAMILY SSF81301 28 151 1.46E-11 T 11-10-2018 AMK58_19545 8480449f09cece5b2714717e2c63a726 60 Pfam PF06568 Domain of unknown function (DUF1127) 23 50 3.6E-10 T 11-10-2018 IPR009506 Protein of unknown function DUF1127 AMK58_09490 3630b49999915047ff9b95ca5ce287cc 246 Pfam PF02104 SURF1 family 24 228 4.6E-44 T 11-10-2018 IPR002994 Surfeit locus 1/Shy1 GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMK58_29050 2b57154d1237ff31ce62d378f817fc23 348 Pfam PF05045 Rhamnan synthesis protein F 89 242 7.3E-26 T 11-10-2018 IPR007739 Rhamnan synthesis F AMK58_13820 3964c4707e4501e9f5031e80332d4af1 171 Pfam PF09361 Phasin protein 63 154 1.3E-7 T 11-10-2018 IPR018968 Phasin AMK58_11150 e271a0236270c68eab9582043c124e1c 200 Pfam PF11659 Protein of unknown function (DUF3261) 53 192 7.7E-25 T 11-10-2018 IPR021675 Protein of unknown function DUF3261 AMK58_06010 fdfb82e1e9d7ed9de6656d938c5d53a7 430 Pfam PF10011 Predicted membrane protein (DUF2254) 13 377 3.8E-104 T 11-10-2018 IPR018723 Protein of unknown function DUF2254, membrane AMK58_16095 cbcf0a6eca22d8c8e3d54e7e9c449f7e 138 Pfam PF09557 Domain of unknown function (DUF2382) 10 117 4.2E-21 T 11-10-2018 IPR019060 Domain of unknown function DUF2382 AMK58_27600 f586fde11a7a13b4a60cfe0b85e01b76 512 Pfam PF03929 PepSY-associated TM region 12 367 1.1E-32 T 11-10-2018 IPR005625 PepSY-associated TM protein AMK58_04600 ec4650db57d6a375cc39ab066a82c772 196 Pfam PF04891 NifQ 36 193 3.8E-43 T 11-10-2018 IPR006975 NifQ GO:0009399|GO:0030151 AMK58_28465 47fa363c9dce4b7d839f44c0cc9b45a2 260 Pfam PF00872 Transposase, Mutator family 68 227 6.9E-30 T 11-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 AMK58_28465 47fa363c9dce4b7d839f44c0cc9b45a2 260 ProSitePatterns PS01007 Transposases, Mutator family, signature. 83 107 - T 11-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 AMK58_05875 060a8e483cc11954c2bb7272cfc6dd68 206 Gene3D G3DSA:2.30.30.240 59 150 1.1E-25 T 11-10-2018 AMK58_05875 060a8e483cc11954c2bb7272cfc6dd68 206 Pfam PF05239 PRC-barrel domain 71 135 4.7E-13 T 11-10-2018 IPR027275 PRC-barrel domain AMK58_05875 060a8e483cc11954c2bb7272cfc6dd68 206 SUPERFAMILY SSF50346 42 159 1.16E-18 T 11-10-2018 IPR011033 PRC-barrel-like superfamily AMK58_07830 2ed95c9c0c833b8c7aa05c71493d2ca7 307 SUPERFAMILY SSF161098 13 305 5.76E-59 T 11-10-2018 IPR035906 MetI-like superfamily AMK58_07830 2ed95c9c0c833b8c7aa05c71493d2ca7 307 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 107 294 1.5E-15 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMK58_01870 ca1f7e0d8d2a3b6969d09dfebf1eec9f 461 Gene3D G3DSA:3.90.220.20 254 445 1.0E-7 T 11-10-2018 AMK58_01870 ca1f7e0d8d2a3b6969d09dfebf1eec9f 461 SUPERFAMILY SSF116734 268 438 2.13E-8 T 11-10-2018 AMK58_22415 e5d0dfb1465f64776d918ab570cd4684 455 SUPERFAMILY SSF51717 125 331 1.83E-27 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMK58_11240 ffc51f9df1e985c8f86d531e150931a8 599 Pfam PF09709 CRISPR-associated protein (Cas_Csd1) 7 581 6.3E-158 T 11-10-2018 IPR010144 CRISPR-associated protein, Csd1-type AMK58_11240 ffc51f9df1e985c8f86d531e150931a8 599 TIGRFAM TIGR01863 cas_Csd1: CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG 6 582 1.8E-154 T 11-10-2018 IPR010144 CRISPR-associated protein, Csd1-type AMK58_16680 76a3f7a6d612fcb55ae8720904a94262 134 Gene3D G3DSA:1.20.1270.360 18 129 2.2E-29 T 11-10-2018 AMK58_05580 9e5771512f6a52736a92e71160717614 386 Pfam PF02653 Branched-chain amino acid transport system / permease component 72 357 1.2E-40 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_00620 0e50a583e8382f4f6ee08b08b4c347d9 230 Pfam PF07264 Etoposide-induced protein 2.4 (EI24) 6 203 3.0E-25 T 11-10-2018 AMK58_12015 3e256fdef0ed412f339029f3264a5adb 192 Gene3D G3DSA:3.90.190.10 11 165 3.0E-12 T 11-10-2018 IPR029021 Protein-tyrosine phosphatase-like AMK58_12015 3e256fdef0ed412f339029f3264a5adb 192 ProSitePatterns PS00383 Tyrosine specific protein phosphatases active site. 96 106 - T 11-10-2018 IPR016130 Protein-tyrosine phosphatase, active site GO:0004725|GO:0016311 AMK58_12015 3e256fdef0ed412f339029f3264a5adb 192 SUPERFAMILY SSF52799 52 157 7.78E-14 T 11-10-2018 IPR029021 Protein-tyrosine phosphatase-like AMK58_14720 133ee278b3667f93714a8aa93b5a794b 189 Pfam PF01923 Cobalamin adenosyltransferase 7 172 1.9E-61 T 11-10-2018 IPR016030 Cobalamin adenosyltransferase-like KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 AMK58_14720 133ee278b3667f93714a8aa93b5a794b 189 SUPERFAMILY SSF89028 6 184 2.35E-63 T 11-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 AMK58_14720 133ee278b3667f93714a8aa93b5a794b 189 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 13 183 5.0E-57 T 11-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 AMK58_14720 133ee278b3667f93714a8aa93b5a794b 189 Gene3D G3DSA:1.20.1200.10 16 187 7.0E-58 T 11-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 AMK58_14720 133ee278b3667f93714a8aa93b5a794b 189 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 8 183 5.8E-57 T 11-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 AMK58_04720 e413fb03f424f304d2a018320a4b9e28 103 Pfam PF04319 NifZ domain 19 89 1.1E-23 T 11-10-2018 IPR007415 Nitrogenase MoFe maturation protein, NifZ GO:0009399 AMK58_22930 14a4ba7e80f9df5c4b9bcf95d27bfe75 155 Pfam PF13430 Domain of unknown function (DUF4112) 25 126 4.0E-31 T 11-10-2018 IPR025187 Protein of unknown function DUF4112 AMK58_15710 bc521ad5a7f11fa8703452d9e8f386f3 282 SUPERFAMILY SSF51658 1 263 1.57E-53 T 11-10-2018 IPR036237 Xylose isomerase-like superfamily AMK58_15710 bc521ad5a7f11fa8703452d9e8f386f3 282 Pfam PF01261 Xylose isomerase-like TIM barrel 25 210 4.2E-22 T 11-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AMK58_15710 bc521ad5a7f11fa8703452d9e8f386f3 282 Gene3D G3DSA:3.20.20.150 1 280 1.4E-66 T 11-10-2018 AMK58_05630 b442f8f2d07896ea6f829062e5f6da0a 294 Pfam PF02653 Branched-chain amino acid transport system / permease component 7 280 1.6E-34 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_25400 3cd94cf40d54fb4e069dccfea505f4c6 179 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 3 166 8.2E-27 T 11-10-2018 IPR003740 Uncharacterised membrane protein YitT AMK58_21905 987bd5307e43f49f9e8ab78b51ca58c4 318 Pfam PF00892 EamA-like transporter family 15 141 5.5E-18 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_21905 987bd5307e43f49f9e8ab78b51ca58c4 318 Pfam PF00892 EamA-like transporter family 154 288 2.6E-18 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMK58_21905 987bd5307e43f49f9e8ab78b51ca58c4 318 SUPERFAMILY SSF103481 44 144 1.19E-14 T 11-10-2018 AMK58_21905 987bd5307e43f49f9e8ab78b51ca58c4 318 SUPERFAMILY SSF103481 187 291 2.09E-14 T 11-10-2018 AMK58_09805 ad1b406a0acf74309d7cecfd7da0da4f 217 Pfam PF01569 PAP2 superfamily 78 152 1.1E-10 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMK58_09805 ad1b406a0acf74309d7cecfd7da0da4f 217 Gene3D G3DSA:1.20.144.10 72 164 6.4E-14 T 11-10-2018 AMK58_09805 ad1b406a0acf74309d7cecfd7da0da4f 217 SUPERFAMILY SSF48317 6 156 1.96E-12 T 11-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily AMK58_08200 2ca41d4b132a149c69478fd695f13302 115 Pfam PF11011 Protein of unknown function (DUF2849) 14 107 1.2E-22 T 11-10-2018 IPR021270 Protein of unknown function DUF2849 AMK58_05895 ca8d361a4b6cdf0380f57baf672e64bd 363 Pfam PF02653 Branched-chain amino acid transport system / permease component 62 339 1.7E-43 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_15340 5aa1bd6a328f1bdfa11161f5685df974 272 Gene3D G3DSA:2.60.120.40 161 268 4.2E-6 T 11-10-2018 IPR008983 Tumour necrosis factor-like domain superfamily GO:0005515 AMK58_15340 5aa1bd6a328f1bdfa11161f5685df974 272 SUPERFAMILY SSF49842 136 256 3.48E-7 T 11-10-2018 IPR008983 Tumour necrosis factor-like domain superfamily GO:0005515 AMK58_21705 26d3c5749e090bda637d7568e7f6fe3a 545 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 24 302 5.5E-11 T 11-10-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD AMK58_19815 e5aa94f0b821266c3fdafe364bff0e19 141 Pfam PF03994 Domain of Unknown Function (DUF350) 24 73 1.9E-9 T 11-10-2018 IPR007140 Protein of unknown function DUF350 AMK58_19815 e5aa94f0b821266c3fdafe364bff0e19 141 Pfam PF03994 Domain of Unknown Function (DUF350) 87 139 2.0E-11 T 11-10-2018 IPR007140 Protein of unknown function DUF350 AMK58_08460 4e6f224996414deb1b4e27ba102f9ffb 179 Pfam PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family 76 165 1.9E-27 T 11-10-2018 IPR007269 Isoprenylcysteine carboxyl methyltransferase GO:0004671|GO:0006481|GO:0016021 Reactome: R-HSA-163841 AMK58_08460 4e6f224996414deb1b4e27ba102f9ffb 179 Gene3D G3DSA:1.20.120.1630 9 168 3.5E-19 T 11-10-2018 AMK58_06545 24f1ae84040d28172019d042fd8ef988 470 SUPERFAMILY SSF52540 202 388 2.8E-5 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMK58_01665 7ac873f5fbfd439d16d7c75e2ba81b35 169 SUPERFAMILY SSF56524 50 168 6.15E-15 T 11-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 AMK58_20135 8a9ccf513f52bf2e157a6b63789aea08 210 Pfam PF03458 UPF0126 domain 100 171 3.4E-19 T 11-10-2018 IPR005115 Uncharacterised domain UPF0126 AMK58_20135 8a9ccf513f52bf2e157a6b63789aea08 210 Pfam PF03458 UPF0126 domain 14 88 7.8E-20 T 11-10-2018 IPR005115 Uncharacterised domain UPF0126 AMK58_20200 4ca2431d1bc44250654be1ec3e29526c 68 Pfam PF07869 Protein of unknown function (DUF1656) 4 59 2.8E-23 T 11-10-2018 IPR012451 Protein of unknown function DUF1656 AMK58_12635 1f3473eca61df84b99adc6def56cab9e 130 TIGRFAM TIGR02300 FYDLN_acid: TIGR02300 family protein 1 128 1.5E-22 T 11-10-2018 IPR012644 Conserved hypothetical protein CHP02300, FYDLN acid AMK58_12635 1f3473eca61df84b99adc6def56cab9e 130 Pfam PF09538 Protein of unknown function (FYDLN_acid) 2 107 4.2E-25 T 11-10-2018 IPR012644 Conserved hypothetical protein CHP02300, FYDLN acid AMK58_03775 32ca9155351b3e3206ce70bd10309d27 385 Pfam PF11294 Protein of unknown function (DUF3095) 3 375 6.4E-96 T 11-10-2018 IPR021445 Protein of unknown function DUF3095 AMK58_12900 98fa6352744e3cdb027dbb2b62a94e11 169 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 35 166 6.6E-31 T 11-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ AMK58_16025 8d4c5cee2098906de9c0f468be23cfde 296 Pfam PF08904 Domain of unknown function (DUF1849) 54 292 4.0E-85 T 11-10-2018 IPR015000 Protein of unknown function DUF1849 AMK58_23335 8a1c9f37718b3fd927475d978bc762b3 64 SUPERFAMILY SSF53098 1 39 5.77E-7 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMK58_17035 cc35d8ffb22560c1044a7f2490d075c9 534 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 121 258 1.0E-7 T 11-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like AMK58_07745 b0e6d0afeab19cccbd263d50d6edf165 224 Pfam PF10691 Protein of unknown function (DUF2497) 145 219 3.6E-24 T 11-10-2018 IPR019632 Protein of unknown function DUF2497 AMK58_07745 b0e6d0afeab19cccbd263d50d6edf165 224 PRINTS PR00806 Vinculin signature 46 59 7.8E-6 T 11-10-2018 AMK58_07745 b0e6d0afeab19cccbd263d50d6edf165 224 PRINTS PR00806 Vinculin signature 31 41 7.8E-6 T 11-10-2018 AMK58_22700 e6d51d49d28193990c1dfeb7b14b1117 562 Pfam PF02652 L-lactate permease 16 553 4.2E-209 T 11-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 AMK58_22700 e6d51d49d28193990c1dfeb7b14b1117 562 TIGRFAM TIGR00795 lctP: transporter, lactate permease (LctP) family 6 555 9.2E-221 T 11-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 AMK58_05545 242ede51e6dcaa5192d9488cf029868a 170 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 16 161 3.1E-21 T 11-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 AMK58_05545 242ede51e6dcaa5192d9488cf029868a 170 Pfam PF04093 rod shape-determining protein MreD 17 156 6.5E-17 T 11-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 AMK58_08690 0f76b063f19b5ec278299d062671cb55 207 Pfam PF01810 LysE type translocator 16 203 1.9E-23 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMK58_18440 a4a6da6c26203366a6588e54aeef91a8 209 SMART SM00749 139 202 1.4E-5 T 11-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria AMK58_18440 a4a6da6c26203366a6588e54aeef91a8 209 Pfam PF04972 BON domain 134 201 2.6E-19 T 11-10-2018 IPR007055 BON domain AMK58_15295 99fb22fbd5e4c764c28cdc0e36067162 221 Pfam PF10076 Uncharacterised protein conserved in bacteria (DUF2313) 1 186 4.1E-40 T 11-10-2018 IPR018755 Bacteriophage Mu-like, Gp48 AMK58_01755 bd2bdffe0b20897d12487c0a1ad64e73 223 Pfam PF11726 Inovirus Gp2 19 183 4.8E-15 T 11-10-2018 AMK58_26205 638c7b8bf3def9e43fb57a5451cd28df 264 SUPERFAMILY SSF158837 1 223 2.35E-70 T 11-10-2018 IPR023157 AGR-C-984p-like superfamily AMK58_26205 638c7b8bf3def9e43fb57a5451cd28df 264 Gene3D G3DSA:1.10.3700.10 1 224 8.0E-75 T 11-10-2018 IPR023157 AGR-C-984p-like superfamily AMK58_26205 638c7b8bf3def9e43fb57a5451cd28df 264 Pfam PF06748 Protein of unknown function (DUF1217) 60 208 1.8E-48 T 11-10-2018 IPR010626 Protein of unknown function DUF1217 AMK58_13160 ece7f00d2af44da23b8474e9a4e8c192 87 Pfam PF06233 Usg-like family 7 85 9.1E-40 T 11-10-2018 IPR009354 Usg-like AMK58_01785 005dac450385403257fd5868d745a495 382 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 33 54 - T 11-10-2018 IPR013087 Zinc finger C2H2-type GO:0003676 AMK58_04310 f3a84ec7c9246b8410298fd5ef54bac7 189 Pfam PF11748 Protein of unknown function (DUF3306) 5 116 1.4E-30 T 11-10-2018 IPR021735 Protein of unknown function DUF3306 AMK58_04915 99f9ce612f419d0d33e4acf3e6e84136 221 SUPERFAMILY SSF46565 58 129 2.84E-10 T 11-10-2018 IPR036869 Chaperone J-domain superfamily AMK58_04915 99f9ce612f419d0d33e4acf3e6e84136 221 Gene3D G3DSA:1.10.287.110 24 129 3.9E-20 T 11-10-2018 IPR036869 Chaperone J-domain superfamily AMK58_24575 02efd51ee1ec09714977b220d35b54cf 346 SUPERFAMILY SSF88713 58 304 2.78E-20 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMK58_24575 02efd51ee1ec09714977b220d35b54cf 346 Pfam PF01522 Polysaccharide deacetylase 97 278 1.2E-14 T 11-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMK58_10490 c62ac8abf8b7117a20be680e4f5dbe66 152 Gene3D G3DSA:1.20.120.50 9 127 7.4E-9 T 11-10-2018 IPR035938 Hemerythrin-like superfamily AMK58_10490 c62ac8abf8b7117a20be680e4f5dbe66 152 SUPERFAMILY SSF47188 13 120 3.27E-12 T 11-10-2018 IPR035938 Hemerythrin-like superfamily AMK58_01890 fe61bb48cf298e7e58e2e01b944d2126 75 Pfam PF13441 YMGG-like Gly-zipper 27 69 3.6E-7 T 11-10-2018 IPR027367 YMGG-like Gly-zipper AMK58_12330 d36f36f103877fe47e4c0780c3fec9d5 63 Pfam PF11127 Protein of unknown function (DUF2892) 1 60 4.0E-24 T 11-10-2018 IPR021309 Protein of unknown function DUF2892 AMK58_22655 6d343d8b8cd411bebfb9af8b3c9119aa 263 Pfam PF12570 Protein of unknown function (DUF3750) 53 185 2.4E-49 T 11-10-2018 IPR022224 Protein of unknown function DUF3750 AMK58_27510 b1e97abb95cde7bf589d5631076aa46e 74 Pfam PF06568 Domain of unknown function (DUF1127) 22 58 1.3E-9 T 11-10-2018 IPR009506 Protein of unknown function DUF1127 AMK58_08260 4186b9ec2ee11ad078eae7d9b8487c61 202 Pfam PF02620 Uncharacterized ACR, COG1399 73 199 2.6E-14 T 11-10-2018 IPR003772 Large ribosomal RNA subunit accumulation protein YceD AMK58_03640 42eb20048049998b29232cc67373a325 156 SUPERFAMILY SSF47240 10 153 5.59E-29 T 11-10-2018 IPR009078 Ferritin-like superfamily AMK58_03640 42eb20048049998b29232cc67373a325 156 Gene3D G3DSA:1.20.1260.10 5 153 3.6E-51 T 11-10-2018 IPR012347 Ferritin-like AMK58_03640 42eb20048049998b29232cc67373a325 156 Pfam PF00210 Ferritin-like domain 11 153 2.4E-7 T 11-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 AMK58_07490 d26f2ab5ff8b0ffd483e7279acbf1316 306 Pfam PF02653 Branched-chain amino acid transport system / permease component 26 283 2.8E-34 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_17725 99ca236682b94ff02c16ef7e42a137ea 467 Pfam PF11739 Dicarboxylate transport 254 452 6.2E-41 T 11-10-2018 IPR021730 Dicarboxylate transport AMK58_18240 099393cc180373b10cf1c966ca9a36b0 247 Pfam PF01618 MotA/TolQ/ExbB proton channel family 143 234 4.8E-9 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel AMK58_27410 479260f0125d34c8418883bdc7d35fe1 403 Pfam PF02653 Branched-chain amino acid transport system / permease component 54 393 5.3E-47 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_27810 1895757e004e9cd83acb69dadbd60297 73 Pfam PF13844 Glycosyl transferase family 41 5 62 2.4E-9 T 11-10-2018 IPR029489 O-GlcNAc transferase, C-terminal KEGG: 00514+2.4.1.255|MetaCyc: PWY-7437|Reactome: R-HSA-3214847|Reactome: R-HSA-5689603 AMK58_27810 1895757e004e9cd83acb69dadbd60297 73 Gene3D G3DSA:3.40.50.11380 1 69 4.4E-23 T 11-10-2018 AMK58_19180 823e6ce0d68aba855f4b36cd5a098db5 189 Pfam PF05239 PRC-barrel domain 86 141 2.0E-5 T 11-10-2018 IPR027275 PRC-barrel domain AMK58_19180 823e6ce0d68aba855f4b36cd5a098db5 189 SUPERFAMILY SSF50346 73 149 8.63E-8 T 11-10-2018 IPR011033 PRC-barrel-like superfamily AMK58_18280 e4e25b9afbdec8398ab9b2919813e33a 141 Pfam PF07378 Flagellar protein FlbT 3 119 1.8E-33 T 11-10-2018 IPR009967 Flagellum biosynthesis repressor FlbT GO:0006402|GO:0048027|GO:1902209 AMK58_18875 5ffa4cc19c9521d3396b394280e498fa 130 Pfam PF14107 Domain of unknown function (DUF4280) 5 124 3.4E-31 T 11-10-2018 IPR025460 Protein of unknown function DUF4280 AMK58_26915 9f274f0281f463cb4882bbc7b2328558 267 Pfam PF09955 Predicted integral membrane protein (DUF2189) 75 201 6.9E-38 T 11-10-2018 IPR018692 Predicted integral membrane protein DUF2189 AMK58_10115 2033610d9bbcfef2cb4db3bfd377c591 319 SUPERFAMILY SSF158791 250 306 1.2E-6 T 11-10-2018 AMK58_09720 a19ba87f13851de563f325764524ab22 360 Pfam PF01594 AI-2E family transporter 42 340 2.7E-46 T 11-10-2018 IPR002549 Transmembrane protein TqsA-like AMK58_28170 b1164bb61af7b95d8fdaa5fde8b5494b 501 Pfam PF03553 Na+/H+ antiporter family 179 481 7.3E-41 T 11-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 AMK58_16810 3e68390a7df9c3b0bdf908c0d7185cc5 272 Pfam PF02616 Segregation and condensation protein ScpA 43 117 3.6E-9 T 11-10-2018 IPR003768 Segregation and condensation protein A AMK58_26190 8e697b10b8de67645ff8a1f89ab15398 130 Pfam PF07309 Flagellar protein FlaF 4 112 2.5E-31 T 11-10-2018 IPR010845 Flagellar FlaF GO:0044781 AMK58_20710 eda5ca06acc0df61fdd8bc39a6b7f537 279 Gene3D G3DSA:3.20.20.60 2 274 1.2E-60 T 11-10-2018 AMK58_20710 eda5ca06acc0df61fdd8bc39a6b7f537 279 SUPERFAMILY SSF51621 8 274 1.35E-58 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMK58_20710 eda5ca06acc0df61fdd8bc39a6b7f537 279 Pfam PF13714 Phosphoenolpyruvate phosphomutase 11 248 9.1E-67 T 11-10-2018 AMK58_16910 2b8bf0b2b6fa141babd67da7c2ff4c1b 290 SUPERFAMILY SSF48576 24 286 1.22E-49 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily AMK58_16910 2b8bf0b2b6fa141babd67da7c2ff4c1b 290 Pfam PF00494 Squalene/phytoene synthase 22 269 1.2E-44 T 11-10-2018 AMK58_16910 2b8bf0b2b6fa141babd67da7c2ff4c1b 290 Gene3D G3DSA:1.10.600.10 17 263 2.9E-54 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily AMK58_23695 d5c8a535f216c5d31e278b31f6d0dfa0 97 Pfam PF09928 Predicted small integral membrane protein (DUF2160) 10 97 5.3E-35 T 11-10-2018 IPR018678 Protein of unknown function DUF2160, transmembrane AMK58_11970 f9859ab07624eba51c31c0791bf37978 80 Pfam PF13711 Domain of unknown function (DUF4160) 9 73 7.9E-20 T 11-10-2018 IPR025427 Protein of unknown function DUF4160 AMK58_25700 4435f7735a5d53243b7fd7af66419b5d 314 Pfam PF04976 DMSO reductase anchor subunit (DmsC) 1 310 3.4E-49 T 11-10-2018 IPR007059 DMSO reductase anchor subunit (DmsC) GO:0016021|GO:0019645 AMK58_12050 92e5d7189aa18a6eab07900e1344d69a 154 Pfam PF14343 PrcB C-terminal 87 138 5.8E-10 T 11-10-2018 IPR025748 PrcB C-terminal domain AMK58_17660 f1da4acda9718e1bb0f4472619694328 97 Pfam PF04977 Septum formation initiator 6 85 1.2E-16 T 11-10-2018 IPR007060 Septum formation initiator FtsL/DivIC AMK58_20095 217fec318b55d52ea6f8f5a51791bfe6 186 Pfam PF05433 Glycine zipper 2TM domain 140 180 5.0E-7 T 11-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 AMK58_17890 6119513ce4c1c962bfe37431d7ee3ca8 277 Pfam PF09849 Uncharacterized protein conserved in bacteria (DUF2076) 1 275 2.6E-77 T 11-10-2018 IPR018648 Protein of unknown function DUF2076 AMK58_00825 d8f771e656ebab8b5a625f3ebe409e5a 197 Pfam PF12007 Protein of unknown function (DUF3501) 8 196 8.6E-62 T 11-10-2018 IPR021890 Protein of unknown function DUF3501 AMK58_09225 1d1a0bebb8da1ec5b50b70c51d55c983 333 Pfam PF00953 Glycosyl transferase family 4 80 228 1.9E-29 T 11-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 AMK58_06570 b4ce6fbf8c95069e5607cea6ce1afbfc 93 Pfam PF10073 Uncharacterized protein conserved in bacteria (DUF2312) 9 81 1.7E-22 T 11-10-2018 IPR018753 Azospirillum phage Cd, Gp10 AMK58_23365 c3b93261d23675e26449e9355cd04e33 126 SUPERFAMILY SSF46689 1 111 2.08E-16 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMK58_04865 f445c94d51bba87f9c309ee99164da91 331 Pfam PF04577 Protein of unknown function (DUF563) 100 299 7.9E-35 T 11-10-2018 IPR007657 Glycosyltransferase 61 GO:0016757 AMK58_23070 c92e34cda32cadacb161481b07065554 392 Pfam PF10098 Uncharacterised protein conserved in bacteria (DUF2336) 91 352 4.4E-63 T 11-10-2018 IPR019285 Protein of unknown function DUF2336 AMK58_05780 cb035907b0f5720519f34cc57165ca89 141 ProDom PD085709 MEMBRANE RP436 UNCHARACTERIZED INTEGRAL PREDICTED TRANSMEMBRANE 7 119 2.0E-6 T 11-10-2018 IPR020143 Uncharacterised protein family, RP436 AMK58_05780 cb035907b0f5720519f34cc57165ca89 141 Pfam PF09335 SNARE associated Golgi protein 25 140 3.2E-12 T 11-10-2018 IPR032816 SNARE associated Golgi protein AMK58_05125 b368f117f8e70827f5723d989a3d1426 66 Pfam PF04325 Protein of unknown function (DUF465) 11 56 6.9E-16 T 11-10-2018 IPR007420 Protein of unknown function DUF465 AMK58_05125 b368f117f8e70827f5723d989a3d1426 66 Gene3D G3DSA:1.20.58.660 3 61 5.9E-8 T 11-10-2018 AMK58_08645 51cb32d743b869a7bc4e4a2929bd99ed 299 Pfam PF11306 Protein of unknown function (DUF3108) 42 278 3.3E-25 T 11-10-2018 IPR021457 Protein of unknown function DUF3108 AMK58_04100 4f1c34118d2b64c33c0ea00843d91ee8 124 Pfam PF03788 LrgA family 12 105 2.6E-29 T 11-10-2018 IPR005538 LrgA/CidA family GO:0016021 AMK58_03610 41ad560673688c189a850102e84320bc 518 Pfam PF04293 SpoVR like protein 17 455 1.6E-167 T 11-10-2018 IPR007390 Sporulation stage V, protein R AMK58_20115 b6ebbe713b2911efb2fbb564d8969223 279 TIGRFAM TIGR02587 TIGR02587: putative integral membrane protein TIGR02587 15 279 7.4E-90 T 11-10-2018 IPR013416 Conserved hypothetical protein CHP02587, putative integral membrane AMK58_20115 b6ebbe713b2911efb2fbb564d8969223 279 Pfam PF09622 Putative integral membrane protein (DUF2391) 20 279 3.6E-93 T 11-10-2018 IPR024464 Protein of unknown function DUF2391 AMK58_04240 8be083b6319923a23c2d721378b46111 116 Pfam PF09923 Uncharacterized protein conserved in bacteria (DUF2155) 22 113 9.8E-36 T 11-10-2018 IPR019225 Protein of unknown function DUF2155 AMK58_25935 038b1f0fd25db88c409ed18f6451132c 323 Pfam PF02653 Branched-chain amino acid transport system / permease component 27 291 1.1E-45 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_13650 8a09a59e32c82b09a0ae31bba3fb91b5 206 Pfam PF03729 Short repeat of unknown function (DUF308) 29 78 1.5E-7 T 11-10-2018 IPR005325 Protein of unknown function DUF308, membrane AMK58_13650 8a09a59e32c82b09a0ae31bba3fb91b5 206 Pfam PF03729 Short repeat of unknown function (DUF308) 141 188 2.6E-4 T 11-10-2018 IPR005325 Protein of unknown function DUF308, membrane AMK58_13650 8a09a59e32c82b09a0ae31bba3fb91b5 206 Pfam PF03729 Short repeat of unknown function (DUF308) 87 152 1.8E-12 T 11-10-2018 IPR005325 Protein of unknown function DUF308, membrane AMK58_21685 0b99704f4a77b3f0f02aca8b5a802386 241 Pfam PF07277 SapC 19 232 5.0E-70 T 11-10-2018 IPR010836 SapC AMK58_25785 75233609686d13e717e449ce06a138c7 305 Pfam PF02653 Branched-chain amino acid transport system / permease component 11 290 4.9E-40 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_14700 029381dcdadbf03dab0511ba69c93ad6 198 Pfam PF13628 Domain of unknown function (DUF4142) 36 168 4.4E-27 T 11-10-2018 IPR025419 Domain of unknown function DUF4142 AMK58_19700 42581f0595ca38da3d6f628ed386ca2c 213 Pfam PF02698 DUF218 domain 56 176 1.7E-12 T 11-10-2018 IPR003848 Domain of unknown function DUF218 AMK58_08580 f15d224226a2c02c2b8f35b2cde960ce 110 Gene3D G3DSA:3.40.30.10 9 108 6.4E-30 T 11-10-2018 AMK58_08580 f15d224226a2c02c2b8f35b2cde960ce 110 SUPERFAMILY SSF52833 8 106 1.34E-28 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMK58_06005 99639ed54ed0815cbf9b3b2cfd981034 241 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 28 237 2.1E-64 T 11-10-2018 IPR006214 Bax inhibitor 1-related AMK58_07575 836e1dd2db5ce3b2b1568f725ef5ac52 472 Pfam PF16980 Putative citrate transport 31 471 3.3E-193 T 11-10-2018 IPR031566 Putative citrate transporter AMK58_29185 d98f1120b5e1594319d25e6061061d24 230 Pfam PF09335 SNARE associated Golgi protein 69 185 7.3E-24 T 11-10-2018 IPR032816 SNARE associated Golgi protein AMK58_17220 0a256d211f456275a572bc628fb669f6 138 Pfam PF07332 Putative Actinobacterial Holin-X, holin superfamily III 20 133 3.6E-33 T 11-10-2018 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III AMK58_13420 b00f8f27a7196d597a3468301d8a6e9e 76 Pfam PF01695 IstB-like ATP binding protein 18 72 7.2E-9 T 11-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 AMK58_23200 7243dd92d80099bd5cb2f10d96772764 295 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 279 3.3E-34 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_11810 affbb03f3204f2971733e474d1285ee4 52 Pfam PF08085 Entericidin EcnA/B family 25 44 2.0E-8 T 11-10-2018 IPR012556 Entericidin A/B GO:0009636|GO:0016020 AMK58_26395 7e7df504f9b303e1bcf2160ae991b16a 107 Gene3D G3DSA:1.10.1660.10 2 56 4.4E-7 T 11-10-2018 AMK58_16970 388a7b95265fc3b6b1f96401e955ee57 50 Pfam PF08085 Entericidin EcnA/B family 29 49 2.6E-10 T 11-10-2018 IPR012556 Entericidin A/B GO:0009636|GO:0016020 AMK58_19820 cdbedd602a751d902187519a7b16c82b 574 Pfam PF10679 Protein of unknown function (DUF2491) 381 571 2.0E-18 T 11-10-2018 IPR019621 Protein of unknown function DUF2491 AMK58_27270 dc0361d71678dcd1d9e7febc6083d2b7 262 SUPERFAMILY SSF53474 3 257 1.94E-22 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMK58_25965 bee59725f2741883f1bbf210dbb675d0 275 Pfam PF01925 Sulfite exporter TauE/SafE 16 269 1.3E-47 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 AMK58_00300 aa6cef696f80dfac7fba114eb1526836 173 Pfam PF03734 L,D-transpeptidase catalytic domain 22 166 9.3E-10 T 11-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AMK58_05010 6b20194789f31956efd8acd2ecbdda9a 208 Pfam PF04891 NifQ 34 188 1.8E-55 T 11-10-2018 IPR006975 NifQ GO:0009399|GO:0030151 AMK58_00635 68c9c4229a5ba953087185f7a84c5f0c 259 Pfam PF09608 Putative transmembrane protein (Alph_Pro_TM) 37 258 3.3E-85 T 11-10-2018 IPR019088 Conserved hypothetical protein CHP02186-related, transmembrane AMK58_26625 3d05ddb8140eeef41e047c1e95460fa9 86 SUPERFAMILY SSF46785 37 85 2.16E-5 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMK58_19890 cfa73d2db1ed5279922495355f1fc613 255 Pfam PF07812 TfuA-like protein 52 170 2.1E-49 T 11-10-2018 IPR012924 TfuA-like, core AMK58_21980 c6b03751e375e9b2561bcdaf00e70104 444 Pfam PF04932 O-Antigen ligase 200 359 2.5E-14 T 11-10-2018 IPR007016 O-antigen ligase-related AMK58_11525 cb5385b9bef049efb69c5538ae6c72ab 398 Pfam PF01757 Acyltransferase family 6 355 1.0E-27 T 11-10-2018 IPR002656 Acyltransferase 3 GO:0016747 AMK58_22975 15e8ca9ce28e5d874766724c20873a86 508 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 439 4.1E-137 T 11-10-2018 IPR002823 Protein of unknown function DUF112, transmembrane AMK58_14975 edb4467fb19ec1633555194bea164717 328 Pfam PF02653 Branched-chain amino acid transport system / permease component 50 308 1.8E-37 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMK58_04160 ceba27a8043e015e904e6956b555c646 97 Pfam PF11154 Protein of unknown function (DUF2934) 5 39 1.3E-12 T 11-10-2018 IPR021327 Protein of unknown function DUF2934 AMK58_26200 3423cfcd4c49482207a547e24ffd6e0b 130 SUPERFAMILY SSF160214 79 109 4.32E-5 T 11-10-2018 IPR035924 FlaG-like superfamily AMK58_25905 aa81b55b736e72e75c364e79ed68657a 349 SUPERFAMILY SSF144052 141 341 6.28E-16 T 11-10-2018 AMK58_02485 8e108e8fcf84e17c9a4dc4ec67978537 144 Pfam PF04138 GtrA-like protein 22 141 3.2E-22 T 11-10-2018 IPR007267 GtrA-like protein GO:0000271|GO:0016021 AMK58_08590 92a37d0b86daadc05b876d8ca2db6edb 126 Pfam PF03748 Flagellar basal body-associated protein FliL 47 124 3.7E-6 T 11-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 AMK58_16435 9dfc528379fd0246e4ebb35fcb1c51fb 392 Pfam PF13384 Homeodomain-like domain 34 70 5.6E-6 T 11-10-2018 AMK58_03435 57ed87cdfb1a519482c6409a763a627c 192 Pfam PF09335 SNARE associated Golgi protein 38 155 7.9E-10 T 11-10-2018 IPR032816 SNARE associated Golgi protein AMK58_01190 9853725af045fd78e933d0bf2014f2ce 243 Pfam PF03741 Integral membrane protein TerC family 15 203 1.4E-48 T 11-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 AMK58_12610 65f9178678cfd605c4a9992d2c7fb16e 268 Pfam PF09955 Predicted integral membrane protein (DUF2189) 76 198 7.5E-32 T 11-10-2018 IPR018692 Predicted integral membrane protein DUF2189 AMK58_24090 cbb4e4532d01b3fab7de7e7467b479dc 98 Pfam PF13436 Glycine-zipper domain 32 72 6.4E-9 T 11-10-2018 IPR025693 Glycine-zipper-containing OmpA-like membrane domain AMK58_17025 f691b4c0c6005b008af20c50aff10954 141 Pfam PF11154 Protein of unknown function (DUF2934) 8 43 6.1E-15 T 11-10-2018 IPR021327 Protein of unknown function DUF2934 AMK58_18920 98973796ce76291592c600889020eae4 233 Gene3D G3DSA:2.60.120.380 53 172 4.6E-7 T 11-10-2018 AMK58_05995 1db03515c82c13c4bc734a8c356ead44 108 Pfam PF11127 Protein of unknown function (DUF2892) 19 74 7.6E-11 T 11-10-2018 IPR021309 Protein of unknown function DUF2892 AMK58_26845 c67ca5815d82540b6ab46b8d127afc3c 137 Pfam PF11162 Protein of unknown function (DUF2946) 22 134 4.2E-8 T 11-10-2018 IPR021333 Protein of unknown function DUF2946 AMK58_28970 80e147cead8929d078a4c1ac76fa0424 285 Pfam PF01061 ABC-2 type transporter 44 246 2.4E-21 T 11-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 AMK58_14010 ef9838242694ca5b7e251c0d00d57d53 171 Pfam PF05128 Domain of unknown function (DUF697) 4 111 5.2E-12 T 11-10-2018 IPR021147 Protein of unknown function DUF697