locus-tag class description DM194_00010 PF12100 Domain of unknown function (DUF3576) DM194_00015 PF08264 Anticodon-binding domain of tRNA DM194_00015 PF00133 tRNA synthetases class I (I, L, M and V) DM194_00015 PF13603 Leucyl-tRNA synthetase, Domain 2 DM194_00035 PF04055 Radical SAM superfamily DM194_00035 PF12544 Lysine-2,3-aminomutase DM194_00040 PF03009 Glycerophosphoryl diester phosphodiesterase family DM194_00065 PF00512 His Kinase A (phospho-acceptor) domain DM194_00065 PF00989 PAS fold DM194_00065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_00075 PF00474 Sodium:solute symporter family DM194_00080 PF04341 Protein of unknown function, DUF485 DM194_00085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_00085 PF00512 His Kinase A (phospho-acceptor) domain DM194_00085 PF08448 PAS fold DM194_00085 PF13188 PAS domain DM194_00085 PF00072 Response regulator receiver domain DM194_00090 PF00072 Response regulator receiver domain DM194_00090 PF00486 Transcriptional regulatory protein, C terminal DM194_00095 PF00501 AMP-binding enzyme DM194_00095 PF13193 AMP-binding enzyme C-terminal domain DM194_00100 PF01012 Electron transfer flavoprotein domain DM194_00105 PF01012 Electron transfer flavoprotein domain DM194_00105 PF00766 Electron transfer flavoprotein FAD-binding domain DM194_00110 PF12806 Acetyl-CoA dehydrogenase C-terminal like DM194_00110 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DM194_00110 PF02770 Acyl-CoA dehydrogenase, middle domain DM194_00110 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DM194_00115 PF00849 RNA pseudouridylate synthase DM194_00120 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DM194_00130 PF03109 ABC1 family DM194_00135 PF01209 ubiE/COQ5 methyltransferase family DM194_00145 PF01632 Ribosomal protein L35 DM194_00150 PF00453 Ribosomal protein L20 DM194_00155 PF01409 tRNA synthetases class II core domain (F) DM194_00155 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain DM194_00160 PF03483 B3/4 domain DM194_00160 PF03484 tRNA synthetase B5 domain DM194_00160 PF03147 Ferredoxin-fold anticodon binding domain DM194_00160 PF01588 Putative tRNA binding domain DM194_00160 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain DM194_00180 PF03466 LysR substrate binding domain DM194_00180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_00190 PF00710 Asparaginase, N-terminal DM194_00190 PF17763 Glutaminase/Asparaginase C-terminal domain DM194_00200 PF06421 GTP-binding protein LepA C-terminus DM194_00200 PF00679 Elongation factor G C-terminus DM194_00200 PF00009 Elongation factor Tu GTP binding domain DM194_00200 PF03144 Elongation factor Tu domain 2 DM194_00205 PF08323 Starch synthase catalytic domain DM194_00205 PF00534 Glycosyl transferases group 1 DM194_00210 PF00483 Nucleotidyl transferase DM194_00215 PF00909 Ammonium Transporter Family DM194_00220 PF02678 Pirin DM194_00220 PF05726 Pirin C-terminal cupin domain DM194_00245 PF04227 Indigoidine synthase A like protein DM194_00255 PF04675 DNA ligase N terminus DM194_00255 PF04679 ATP dependent DNA ligase C terminal region DM194_00255 PF01068 ATP dependent DNA ligase domain DM194_00270 PF06258 Mitochondrial fission ELM1 DM194_00275 PF01037 Lrp/AsnC ligand binding domain DM194_00280 PF02417 Chromate transporter DM194_00290 PF01272 Transcription elongation factor, GreA/GreB, C-term DM194_00290 PF03449 Transcription elongation factor, N-terminal DM194_00295 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DM194_00295 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DM194_00295 PF02142 MGS-like domain DM194_00315 PF03264 NapC/NirT cytochrome c family, N-terminal region DM194_00320 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) DM194_00325 PF01568 Molydopterin dinucleotide binding domain DM194_00325 PF00384 Molybdopterin oxidoreductase DM194_00325 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DM194_00340 PF02308 MgtC family DM194_00345 PF00512 His Kinase A (phospho-acceptor) domain DM194_00345 PF13188 PAS domain DM194_00345 PF00989 PAS fold DM194_00345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_00350 PF00561 alpha/beta hydrolase fold DM194_00370 PF05163 DinB family DM194_00375 PF09397 Ftsk gamma domain DM194_00375 PF17854 FtsK alpha domain DM194_00375 PF01580 FtsK/SpoIIIE family DM194_00375 PF13491 4TM region of DNA translocase FtsK/SpoIIIE DM194_00395 PF08032 RNA 2'-O ribose methyltransferase substrate binding DM194_00395 PF00588 SpoU rRNA Methylase family DM194_00400 PF09335 SNARE associated Golgi protein DM194_00415 PF02685 Glucokinase DM194_00420 PF00982 Glycosyltransferase family 20 DM194_00445 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DM194_00450 PF02224 Cytidylate kinase DM194_00455 PF00575 S1 RNA binding domain DM194_00470 PF02867 Ribonucleotide reductase, barrel domain DM194_00470 PF08471 Class II vitamin B12-dependent ribonucleotide reductase DM194_00475 PF00563 EAL domain DM194_00475 PF00990 Diguanylate cyclase, GGDEF domain DM194_00475 PF03707 Bacterial signalling protein N terminal repeat DM194_00480 PF00391 PEP-utilising enzyme, mobile domain DM194_00480 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DM194_00480 PF02896 PEP-utilising enzyme, TIM barrel domain DM194_00485 PF13744 Helix-turn-helix domain DM194_00490 PF05973 Phage derived protein Gp49-like (DUF891) DM194_00495 PF00391 PEP-utilising enzyme, mobile domain DM194_00495 PF02896 PEP-utilising enzyme, TIM barrel domain DM194_00495 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DM194_00520 PF00270 DEAD/DEAH box helicase DM194_00520 PF04408 Helicase associated domain (HA2) DM194_00520 PF00271 Helicase conserved C-terminal domain DM194_00520 PF08482 ATP-dependent helicase C-terminal DM194_00550 PF02515 CoA-transferase family III DM194_00555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_00555 PF00512 His Kinase A (phospho-acceptor) domain DM194_00555 PF00989 PAS fold DM194_00565 PF00364 Biotin-requiring enzyme DM194_00565 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DM194_00565 PF02817 e3 binding domain DM194_00570 PF02779 Transketolase, pyrimidine binding domain DM194_00570 PF16870 2-oxoglutarate dehydrogenase C-terminal DM194_00570 PF00676 Dehydrogenase E1 component DM194_00570 PF16078 2-oxoglutarate dehydrogenase N-terminus DM194_00575 PF02629 CoA binding domain DM194_00575 PF00549 CoA-ligase DM194_00580 PF00549 CoA-ligase DM194_00580 PF08442 ATP-grasp domain DM194_00585 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DM194_00585 PF00056 lactate/malate dehydrogenase, NAD binding domain DM194_00600 PF01921 tRNA synthetases class I (K) DM194_00605 PF00893 Small Multidrug Resistance protein DM194_00610 PF01022 Bacterial regulatory protein, arsR family DM194_00620 PF03707 Bacterial signalling protein N terminal repeat DM194_00620 PF00990 Diguanylate cyclase, GGDEF domain DM194_00620 PF00563 EAL domain DM194_00625 PF01741 Large-conductance mechanosensitive channel, MscL DM194_00630 PF07516 SecA Wing and Scaffold domain DM194_00630 PF01043 SecA preprotein cross-linking domain DM194_00630 PF07517 SecA DEAD-like domain DM194_00630 PF02810 SEC-C motif DM194_00640 PF01960 ArgJ family DM194_00645 PF00293 NUDIX domain DM194_00650 PF00270 DEAD/DEAH box helicase DM194_00650 PF16124 RecQ zinc-binding DM194_00650 PF09382 RQC domain DM194_00650 PF00570 HRDC domain DM194_00650 PF00271 Helicase conserved C-terminal domain DM194_00660 PF01430 Hsp33 protein DM194_00665 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DM194_00665 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DM194_00670 PF00202 Aminotransferase class-III DM194_00675 PF01061 ABC-2 type transporter DM194_00680 PF02631 RecX family DM194_00685 PF00830 Ribosomal L28 family DM194_00700 PF00005 ABC transporter DM194_00700 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DM194_00705 PF12911 N-terminal TM domain of oligopeptide transport permease C DM194_00705 PF00528 Binding-protein-dependent transport system inner membrane component DM194_00710 PF00528 Binding-protein-dependent transport system inner membrane component DM194_00715 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DM194_00720 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DM194_00730 PF00459 Inositol monophosphatase family DM194_00735 PF00293 NUDIX domain DM194_00735 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain DM194_00735 PF09297 NADH pyrophosphatase zinc ribbon domain DM194_00740 PF00800 Prephenate dehydratase DM194_00740 PF01842 ACT domain DM194_00745 PF02348 Cytidylyltransferase DM194_00750 PF00034 Cytochrome c DM194_00765 PF08298 PrkA AAA domain DM194_00765 PF06798 PrkA serine protein kinase C-terminal domain DM194_00770 PF04285 Protein of unknown function (DUF444) DM194_00775 PF04293 SpoVR like protein DM194_00780 PF00144 Beta-lactamase DM194_00785 PF00501 AMP-binding enzyme DM194_00785 PF13193 AMP-binding enzyme C-terminal domain DM194_00790 PF00708 Acylphosphatase DM194_00805 PF03099 Biotin/lipoate A/B protein ligase family DM194_00820 PF00571 CBS domain DM194_00820 PF01769 Divalent cation transporter DM194_00820 PF03448 MgtE intracellular N domain DM194_00830 PF05690 Thiazole biosynthesis protein ThiG DM194_00840 PF05690 Thiazole biosynthesis protein ThiG DM194_00840 PF01266 FAD dependent oxidoreductase DM194_00845 PF00672 HAMP domain DM194_00845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_00845 PF02203 Tar ligand binding domain homologue DM194_00860 PF00072 Response regulator receiver domain DM194_00860 PF00486 Transcriptional regulatory protein, C terminal DM194_00865 PF01323 DSBA-like thioredoxin domain DM194_00905 PF00571 CBS domain DM194_00910 PF01266 FAD dependent oxidoreductase DM194_00915 PF03466 LysR substrate binding domain DM194_00915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_00920 PF07063 Domain of unknown function (DUF1338) DM194_00925 PF00990 Diguanylate cyclase, GGDEF domain DM194_00925 PF00563 EAL domain DM194_00925 PF03707 Bacterial signalling protein N terminal repeat DM194_00970 PF05717 IS66 Orf2 like protein DM194_00975 PF03050 Transposase IS66 family DM194_00975 PF13005 zinc-finger binding domain of transposase IS66 DM194_00975 PF13007 Transposase C of IS166 homeodomain DM194_00975 PF13817 IS66 C-terminal element DM194_00980 PF13520 Amino acid permease DM194_00985 PF04960 Glutaminase DM194_00990 PF13520 Amino acid permease DM194_00995 PF00282 Pyridoxal-dependent decarboxylase conserved domain DM194_01000 PF08240 Alcohol dehydrogenase GroES-like domain DM194_01000 PF00107 Zinc-binding dehydrogenase DM194_01005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_01005 PF03466 LysR substrate binding domain DM194_01020 PF00579 tRNA synthetases class I (W and Y) DM194_01025 PF05951 Bacterial protein of unknown function (DUF882) DM194_01030 PF04002 RadC-like JAB domain DM194_01035 PF01292 Prokaryotic cytochrome b561 DM194_01040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_01040 PF00672 HAMP domain DM194_01040 PF00512 His Kinase A (phospho-acceptor) domain DM194_01045 PF00486 Transcriptional regulatory protein, C terminal DM194_01045 PF00072 Response regulator receiver domain DM194_01050 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DM194_01050 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DM194_01055 PF03737 Aldolase/RraA DM194_01070 PF00444 Ribosomal protein L36 DM194_01075 PF02913 FAD linked oxidases, C-terminal domain DM194_01075 PF01565 FAD binding domain DM194_01080 PF01565 FAD binding domain DM194_01085 PF13183 4Fe-4S dicluster domain DM194_01085 PF02754 Cysteine-rich domain DM194_01090 PF01066 CDP-alcohol phosphatidyltransferase DM194_01105 PF00465 Iron-containing alcohol dehydrogenase DM194_01115 PF00005 ABC transporter DM194_01130 PF01891 Cobalt uptake substrate-specific transmembrane region DM194_01140 PF01402 Ribbon-helix-helix protein, copG family DM194_01140 PF08753 NikR C terminal nickel binding domain DM194_01150 PF00909 Ammonium Transporter Family DM194_01160 PF01774 UreD urease accessory protein DM194_01165 PF02492 CobW/HypB/UreG, nucleotide-binding domain DM194_01170 PF01730 UreF DM194_01180 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DM194_01185 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DM194_01190 PF01979 Amidohydrolase family DM194_01190 PF00449 Urease alpha-subunit, N-terminal domain DM194_01195 PF00699 Urease beta subunit DM194_01200 PF00547 Urease, gamma subunit DM194_01205 PF02770 Acyl-CoA dehydrogenase, middle domain DM194_01205 PF12806 Acetyl-CoA dehydrogenase C-terminal like DM194_01205 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DM194_01205 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DM194_01215 PF02277 Phosphoribosyltransferase DM194_01225 PF07687 Peptidase dimerisation domain DM194_01225 PF01546 Peptidase family M20/M25/M40 DM194_01230 PF00132 Bacterial transferase hexapeptide (six repeats) DM194_01230 PF14602 Hexapeptide repeat of succinyl-transferase DM194_01230 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal DM194_01240 PF00563 EAL domain DM194_01240 PF00990 Diguanylate cyclase, GGDEF domain DM194_01240 PF03707 Bacterial signalling protein N terminal repeat DM194_01265 PF00448 SRP54-type protein, GTPase domain DM194_01265 PF02881 SRP54-type protein, helical bundle domain DM194_01265 PF02978 Signal peptide binding domain DM194_01270 PF00886 Ribosomal protein S16 DM194_01275 PF05239 PRC-barrel domain DM194_01275 PF01782 RimM N-terminal domain DM194_01280 PF01746 tRNA (Guanine-1)-methyltransferase DM194_01285 PF01245 Ribosomal protein L19 DM194_01290 PF00468 Ribosomal protein L34 DM194_01295 PF00825 Ribonuclease P DM194_01300 PF01809 Putative membrane protein insertion efficiency factor DM194_01305 PF02096 60Kd inner membrane protein DM194_01305 PF14849 YidC periplasmic domain DM194_01310 PF01926 50S ribosome-binding GTPase DM194_01320 PF00696 Amino acid kinase family DM194_01330 PF01544 CorA-like Mg2+ transporter protein DM194_01335 PF13667 ThiC-associated domain DM194_01335 PF01964 Radical SAM ThiC family DM194_01340 PF03449 Transcription elongation factor, N-terminal DM194_01340 PF01272 Transcription elongation factor, GreA/GreB, C-term DM194_01345 PF12111 Polyribonucleotide phosphorylase C terminal DM194_01345 PF10150 Ribonuclease E/G family DM194_01345 PF00575 S1 RNA binding domain DM194_01350 PF01520 N-acetylmuramoyl-L-alanine amidase DM194_01350 PF11741 AMIN domain DM194_01355 PF17092 Penicillin-binding protein OB-like domain DM194_01355 PF00905 Penicillin binding protein transpeptidase domain DM194_01355 PF00912 Transglycosylase DM194_01365 PF03062 MBOAT, membrane-bound O-acyltransferase family DM194_01385 PF02358 Trehalose-phosphatase DM194_01400 PF00480 ROK family DM194_01425 PF00005 ABC transporter DM194_01430 PF00528 Binding-protein-dependent transport system inner membrane component DM194_01435 PF00528 Binding-protein-dependent transport system inner membrane component DM194_01445 PF00005 ABC transporter DM194_01460 PF00005 ABC transporter DM194_01465 PF12399 Branched-chain amino acid ATP-binding cassette transporter DM194_01465 PF00005 ABC transporter DM194_01470 PF02653 Branched-chain amino acid transport system / permease component DM194_01475 PF13458 Periplasmic binding protein DM194_01500 PF08032 RNA 2'-O ribose methyltransferase substrate binding DM194_01500 PF00588 SpoU rRNA Methylase family DM194_01515 PF00009 Elongation factor Tu GTP binding domain DM194_01515 PF03144 Elongation factor Tu domain 2 DM194_01515 PF03143 Elongation factor Tu C-terminal domain DM194_01530 PF02357 Transcription termination factor nusG DM194_01530 PF00467 KOW motif DM194_01535 PF03946 Ribosomal protein L11, N-terminal domain DM194_01535 PF00298 Ribosomal protein L11, RNA binding domain DM194_01540 PF00687 Ribosomal protein L1p/L10e family DM194_01545 PF00466 Ribosomal protein L10 DM194_01550 PF16320 Ribosomal protein L7/L12 dimerisation domain DM194_01550 PF00542 Ribosomal protein L7/L12 C-terminal domain DM194_01555 PF04563 RNA polymerase beta subunit DM194_01555 PF10385 RNA polymerase beta subunit external 1 domain DM194_01555 PF04565 RNA polymerase Rpb2, domain 3 DM194_01555 PF04561 RNA polymerase Rpb2, domain 2 DM194_01555 PF04560 RNA polymerase Rpb2, domain 7 DM194_01555 PF00562 RNA polymerase Rpb2, domain 6 DM194_01560 PF05000 RNA polymerase Rpb1, domain 4 DM194_01560 PF04983 RNA polymerase Rpb1, domain 3 DM194_01560 PF00623 RNA polymerase Rpb1, domain 2 DM194_01560 PF04997 RNA polymerase Rpb1, domain 1 DM194_01560 PF04998 RNA polymerase Rpb1, domain 5 DM194_01565 PF00164 Ribosomal protein S12/S23 DM194_01570 PF00177 Ribosomal protein S7p/S5e DM194_01575 PF03764 Elongation factor G, domain IV DM194_01575 PF03144 Elongation factor Tu domain 2 DM194_01575 PF00009 Elongation factor Tu GTP binding domain DM194_01575 PF14492 Elongation Factor G, domain II DM194_01575 PF00679 Elongation factor G C-terminus DM194_01580 PF03143 Elongation factor Tu C-terminal domain DM194_01580 PF03144 Elongation factor Tu domain 2 DM194_01580 PF00009 Elongation factor Tu GTP binding domain DM194_01585 PF00338 Ribosomal protein S10p/S20e DM194_01590 PF00297 Ribosomal protein L3 DM194_01595 PF00573 Ribosomal protein L4/L1 family DM194_01600 PF00276 Ribosomal protein L23 DM194_01605 PF03947 Ribosomal Proteins L2, C-terminal domain DM194_01605 PF00181 Ribosomal Proteins L2, RNA binding domain DM194_01610 PF00203 Ribosomal protein S19 DM194_01615 PF00237 Ribosomal protein L22p/L17e DM194_01620 PF00189 Ribosomal protein S3, C-terminal domain DM194_01620 PF07650 KH domain DM194_01625 PF00252 Ribosomal protein L16p/L10e DM194_01630 PF00831 Ribosomal L29 protein DM194_01635 PF00366 Ribosomal protein S17 DM194_01640 PF00238 Ribosomal protein L14p/L23e DM194_01645 PF00467 KOW motif DM194_01645 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DM194_01650 PF00281 Ribosomal protein L5 DM194_01650 PF00673 ribosomal L5P family C-terminus DM194_01655 PF00253 Ribosomal protein S14p/S29e DM194_01660 PF00410 Ribosomal protein S8 DM194_01665 PF00347 Ribosomal protein L6 DM194_01670 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DM194_01675 PF00333 Ribosomal protein S5, N-terminal domain DM194_01675 PF03719 Ribosomal protein S5, C-terminal domain DM194_01680 PF00327 Ribosomal protein L30p/L7e DM194_01685 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DM194_01690 PF00344 SecY translocase DM194_01695 PF05191 Adenylate kinase, active site lid DM194_01705 PF00892 EamA-like transporter family DM194_01720 PF04107 Glutamate-cysteine ligase family 2(GCS2) DM194_01725 PF01053 Cys/Met metabolism PLP-dependent enzyme DM194_01735 PF00512 His Kinase A (phospho-acceptor) domain DM194_01735 PF00989 PAS fold DM194_01735 PF13188 PAS domain DM194_01735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_01735 PF13426 PAS domain DM194_01740 PF06508 Queuosine biosynthesis protein QueC DM194_01755 PF01970 Tripartite tricarboxylate transporter TctA family DM194_01785 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DM194_01785 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DM194_01790 PF02308 MgtC family DM194_01795 PF07690 Major Facilitator Superfamily DM194_01800 PF06574 FAD synthetase DM194_01800 PF01687 Riboflavin kinase DM194_01805 PF01575 MaoC like domain DM194_01810 PF03330 Lytic transglycolase DM194_01810 PF05036 Sporulation related domain DM194_01825 PF01594 AI-2E family transporter DM194_01855 PF01259 SAICAR synthetase DM194_01860 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase DM194_01865 PF00730 HhH-GPD superfamily base excision DNA repair protein DM194_01865 PF06029 AlkA N-terminal domain DM194_01865 PF02805 Metal binding domain of Ada DM194_01865 PF12833 Helix-turn-helix domain DM194_01875 PF01810 LysE type translocator DM194_01885 PF02390 Putative methyltransferase DM194_01885 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) DM194_01890 PF02606 Tetraacyldisaccharide-1-P 4'-kinase DM194_01895 PF03279 Bacterial lipid A biosynthesis acyltransferase DM194_01900 PF01810 LysE type translocator DM194_01910 PF00072 Response regulator receiver domain DM194_01910 PF00672 HAMP domain DM194_01910 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DM194_01910 PF01627 Hpt domain DM194_01910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_01910 PF00512 His Kinase A (phospho-acceptor) domain DM194_01915 PF01012 Electron transfer flavoprotein domain DM194_01920 PF01012 Electron transfer flavoprotein domain DM194_01920 PF00766 Electron transfer flavoprotein FAD-binding domain DM194_01935 PF04397 LytTr DNA-binding domain DM194_01935 PF00072 Response regulator receiver domain DM194_01945 PF03206 Nitrogen fixation protein NifW DM194_01950 PF00132 Bacterial transferase hexapeptide (six repeats) DM194_01955 PF00682 HMGL-like DM194_01960 PF00266 Aminotransferase class-V DM194_01965 PF01592 NifU-like N terminal domain DM194_01965 PF01106 NifU-like domain DM194_01965 PF04324 BFD-like [2Fe-2S] binding domain DM194_01970 PF01521 Iron-sulphur cluster biosynthesis DM194_01980 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DM194_01990 PF00892 EamA-like transporter family DM194_01995 PF00462 Glutaredoxin DM194_02005 PF00206 Lyase DM194_02005 PF10397 Adenylosuccinate lyase C-terminus DM194_02010 PF03707 Bacterial signalling protein N terminal repeat DM194_02010 PF00990 Diguanylate cyclase, GGDEF domain DM194_02010 PF00563 EAL domain DM194_02025 PF13416 Bacterial extracellular solute-binding protein DM194_02030 PF00528 Binding-protein-dependent transport system inner membrane component DM194_02035 PF00528 Binding-protein-dependent transport system inner membrane component DM194_02040 PF00005 ABC transporter DM194_02040 PF08402 TOBE domain DM194_02045 PF07896 Protein of unknown function (DUF1674) DM194_02050 PF01435 Peptidase family M48 DM194_02070 PF03186 CobD/Cbib protein DM194_02090 PF09456 RcsC Alpha-Beta-Loop (ABL) DM194_02090 PF00512 His Kinase A (phospho-acceptor) domain DM194_02090 PF00072 Response regulator receiver domain DM194_02090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_02095 PF00512 His Kinase A (phospho-acceptor) domain DM194_02095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_02095 PF00497 Bacterial extracellular solute-binding proteins, family 3 DM194_02100 PF01740 STAS domain DM194_02110 PF00486 Transcriptional regulatory protein, C terminal DM194_02110 PF00072 Response regulator receiver domain DM194_02115 PF01513 ATP-NAD kinase DM194_02120 PF10431 C-terminal, D2-small domain, of ClpB protein DM194_02120 PF02861 Clp amino terminal domain, pathogenicity island component DM194_02120 PF00004 ATPase family associated with various cellular activities (AAA) DM194_02120 PF17871 AAA lid domain DM194_02120 PF07724 AAA domain (Cdc48 subfamily) DM194_02125 PF02617 ATP-dependent Clp protease adaptor protein ClpS DM194_02130 PF13005 zinc-finger binding domain of transposase IS66 DM194_02130 PF13007 Transposase C of IS166 homeodomain DM194_02130 PF13817 IS66 C-terminal element DM194_02130 PF03050 Transposase IS66 family DM194_02135 PF05717 IS66 Orf2 like protein DM194_02165 PF00768 D-alanyl-D-alanine carboxypeptidase DM194_02165 PF07943 Penicillin-binding protein 5, C-terminal domain DM194_02170 PF00672 HAMP domain DM194_02170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_02170 PF00512 His Kinase A (phospho-acceptor) domain DM194_02170 PF00072 Response regulator receiver domain DM194_02170 PF17149 Periplasmic sensor domain found in signal transduction proteins DM194_02170 PF01627 Hpt domain DM194_02180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_02180 PF00512 His Kinase A (phospho-acceptor) domain DM194_02180 PF00989 PAS fold DM194_02185 PF00512 His Kinase A (phospho-acceptor) domain DM194_02185 PF00672 HAMP domain DM194_02185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_02190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_02190 PF00512 His Kinase A (phospho-acceptor) domain DM194_02195 PF01515 Phosphate acetyl/butaryl transferase DM194_02200 PF00871 Acetokinase family DM194_02205 PF03466 LysR substrate binding domain DM194_02205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_02215 PF00342 Phosphoglucose isomerase DM194_02225 PF05193 Peptidase M16 inactive domain DM194_02230 PF05193 Peptidase M16 inactive domain DM194_02230 PF00675 Insulinase (Peptidase family M16) DM194_02240 PF01252 Signal peptidase (SPase) II DM194_02245 PF00133 tRNA synthetases class I (I, L, M and V) DM194_02245 PF08264 Anticodon-binding domain of tRNA DM194_02270 PF00156 Phosphoribosyl transferase domain DM194_02275 PF01814 Hemerythrin HHE cation binding domain DM194_02280 PF00672 HAMP domain DM194_02280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_02280 PF00672 HAMP domain DM194_02280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_02290 PF00669 Bacterial flagellin N-terminal helical region DM194_02290 PF00700 Bacterial flagellin C-terminal helical region DM194_02305 PF02515 CoA-transferase family III DM194_02310 PF06463 Molybdenum Cofactor Synthesis C DM194_02310 PF04055 Radical SAM superfamily DM194_02320 PF12849 PBP superfamily domain DM194_02325 PF00528 Binding-protein-dependent transport system inner membrane component DM194_02330 PF02634 FdhD/NarQ family DM194_02335 PF12804 MobA-like NTP transferase domain DM194_02360 PF01568 Molydopterin dinucleotide binding domain DM194_02360 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DM194_02360 PF00384 Molybdopterin oxidoreductase DM194_02365 PF13247 4Fe-4S dicluster domain DM194_02380 PF00596 Class II Aldolase and Adducin N-terminal domain DM194_02385 PF00512 His Kinase A (phospho-acceptor) domain DM194_02385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_02385 PF00072 Response regulator receiver domain DM194_02385 PF09308 LuxQ, periplasmic DM194_02390 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DM194_02400 PF00430 ATP synthase B/B' CF(0) DM194_02405 PF00430 ATP synthase B/B' CF(0) DM194_02410 PF00137 ATP synthase subunit C DM194_02415 PF00119 ATP synthase A chain DM194_02425 PF02630 SCO1/SenC DM194_02430 PF00672 HAMP domain DM194_02430 PF17200 Single Cache domain 2 DM194_02430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_02435 PF02562 PhoH-like protein DM194_02440 PF03775 Septum formation inhibitor MinC, C-terminal domain DM194_02440 PF05209 Septum formation inhibitor MinC, N-terminal domain DM194_02445 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DM194_02450 PF03776 Septum formation topological specificity factor MinE DM194_02465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_02470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_02470 PF08447 PAS fold DM194_02470 PF13426 PAS domain DM194_02475 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DM194_02475 PF13378 Enolase C-terminal domain-like DM194_02485 PF03167 Uracil DNA glycosylase superfamily DM194_02500 PF01040 UbiA prenyltransferase family DM194_02510 PF04452 RNA methyltransferase DM194_02520 PF12838 4Fe-4S dicluster domain DM194_02525 PF05082 Rop-like DM194_02530 PF03270 Protein of unknown function, DUF269 DM194_02535 PF02579 Dinitrogenase iron-molybdenum cofactor DM194_02540 PF00148 Nitrogenase component 1 type Oxidoreductase DM194_02545 PF04324 BFD-like [2Fe-2S] binding domain DM194_02545 PF00148 Nitrogenase component 1 type Oxidoreductase DM194_02550 PF11844 Domain of unknown function (DUF3364) DM194_02550 PF00148 Nitrogenase component 1 type Oxidoreductase DM194_02555 PF00148 Nitrogenase component 1 type Oxidoreductase DM194_02560 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family DM194_02570 PF07357 Dinitrogenase reductase ADP-ribosyltransferase (DRAT) DM194_02575 PF03747 ADP-ribosylglycohydrolase DM194_02580 PF03960 ArsC family DM194_02585 PF13230 Glutamine amidotransferases class-II DM194_02590 PF02525 Flavodoxin-like fold DM194_02595 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus DM194_02595 PF01048 Phosphorylase superfamily DM194_02600 PF00448 SRP54-type protein, GTPase domain DM194_02600 PF02881 SRP54-type protein, helical bundle domain DM194_02605 PF00919 Uncharacterized protein family UPF0004 DM194_02605 PF04055 Radical SAM superfamily DM194_02610 PF01678 Diaminopimelate epimerase DM194_02640 PF00694 Aconitase C-terminal domain DM194_02645 PF00180 Isocitrate/isopropylmalate dehydrogenase DM194_02655 PF03328 HpcH/HpaI aldolase/citrate lyase family DM194_02660 PF08543 Phosphomethylpyrimidine kinase DM194_02665 PF00512 His Kinase A (phospho-acceptor) domain DM194_02665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_02670 PF03969 AFG1-like ATPase DM194_02685 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family DM194_02685 PF04055 Radical SAM superfamily DM194_02690 PF00106 short chain dehydrogenase DM194_02695 PF00364 Biotin-requiring enzyme DM194_02695 PF00561 alpha/beta hydrolase fold DM194_02700 PF02780 Transketolase, C-terminal domain DM194_02700 PF02779 Transketolase, pyrimidine binding domain DM194_02705 PF00676 Dehydrogenase E1 component DM194_02710 PF01513 ATP-NAD kinase DM194_02715 PF02913 FAD linked oxidases, C-terminal domain DM194_02715 PF01565 FAD binding domain DM194_02725 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 DM194_02730 PF12848 ABC transporter DM194_02730 PF00005 ABC transporter DM194_02750 PF07690 Major Facilitator Superfamily DM194_02760 PF04333 MlaA lipoprotein DM194_02765 PF13847 Methyltransferase domain DM194_02765 PF03551 Transcriptional regulator PadR-like family DM194_02770 PF02219 Methylenetetrahydrofolate reductase DM194_02780 PF02607 B12 binding domain DM194_02780 PF02574 Homocysteine S-methyltransferase DM194_02780 PF00809 Pterin binding enzyme DM194_02780 PF02965 Vitamin B12 dependent methionine synthase, activation domain DM194_02780 PF02310 B12 binding domain DM194_02800 PF00990 Diguanylate cyclase, GGDEF domain DM194_02805 PF03060 Nitronate monooxygenase DM194_02815 PF07690 Major Facilitator Superfamily DM194_02820 PF00009 Elongation factor Tu GTP binding domain DM194_02825 PF01507 Phosphoadenosine phosphosulfate reductase family DM194_02830 PF01507 Phosphoadenosine phosphosulfate reductase family DM194_02835 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DM194_02835 PF10414 Sirohaem synthase dimerisation region DM194_02835 PF14824 Sirohaem biosynthesis protein central DM194_02845 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DM194_02845 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DM194_02860 PF05951 Bacterial protein of unknown function (DUF882) DM194_02870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_02870 PF00512 His Kinase A (phospho-acceptor) domain DM194_02875 PF00196 Bacterial regulatory proteins, luxR family DM194_02875 PF00072 Response regulator receiver domain DM194_02880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_02880 PF00512 His Kinase A (phospho-acceptor) domain DM194_02880 PF00989 PAS fold DM194_02885 PF03480 Bacterial extracellular solute-binding protein, family 7 DM194_02890 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component DM194_02895 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DM194_02900 PF01568 Molydopterin dinucleotide binding domain DM194_02900 PF00384 Molybdopterin oxidoreductase DM194_02900 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DM194_02905 PF01368 DHH family DM194_02905 PF02272 DHHA1 domain DM194_02905 PF10141 Single-strand DNA-specific exonuclease, C terminal domain DM194_02905 PF17768 RecJ OB domain DM194_02920 PF01381 Helix-turn-helix DM194_02925 PF01207 Dihydrouridine synthase (Dus) DM194_02930 PF14821 Threonine synthase N terminus DM194_02930 PF00291 Pyridoxal-phosphate dependent enzyme DM194_02935 PF00675 Insulinase (Peptidase family M16) DM194_02935 PF05193 Peptidase M16 inactive domain DM194_02940 PF13302 Acetyltransferase (GNAT) domain DM194_02960 PF00459 Inositol monophosphatase family DM194_02965 PF01132 Elongation factor P (EF-P) OB domain DM194_02965 PF08207 Elongation factor P (EF-P) KOW-like domain DM194_02965 PF09285 Elongation factor P, C-terminal DM194_02970 PF00152 tRNA synthetases class II (D, K and N) DM194_02975 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) DM194_02980 PF01925 Sulfite exporter TauE/SafE DM194_02985 PF02581 Thiamine monophosphate synthase DM194_02990 PF01791 DeoC/LacD family aldolase DM194_03010 PF17200 Single Cache domain 2 DM194_03010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_03010 PF00672 HAMP domain DM194_03015 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DM194_03015 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DM194_03020 PF02780 Transketolase, C-terminal domain DM194_03020 PF00456 Transketolase, thiamine diphosphate binding domain DM194_03020 PF02779 Transketolase, pyrimidine binding domain DM194_03040 PF01812 5-formyltetrahydrofolate cyclo-ligase family DM194_03045 PF13277 YmdB-like protein DM194_03050 PF01709 Transcriptional regulator DM194_03055 PF02075 Crossover junction endodeoxyribonuclease RuvC DM194_03060 PF01330 RuvA N terminal domain DM194_03060 PF07499 RuvA, C-terminal domain DM194_03065 PF05491 RuvB C-terminal winged helix domain DM194_03065 PF05496 Holliday junction DNA helicase RuvB P-loop domain DM194_03065 PF17864 RuvB AAA lid domain DM194_03070 PF03061 Thioesterase superfamily DM194_03075 PF01618 MotA/TolQ/ExbB proton channel family DM194_03080 PF02472 Biopolymer transport protein ExbD/TolR DM194_03090 PF07676 WD40-like Beta Propeller Repeat DM194_03090 PF04052 TolB amino-terminal domain DM194_03095 PF00691 OmpA family DM194_03105 PF01171 PP-loop family DM194_03110 PF00004 ATPase family associated with various cellular activities (AAA) DM194_03110 PF17862 AAA+ lid domain DM194_03110 PF06480 FtsH Extracellular DM194_03110 PF01434 Peptidase family M41 DM194_03130 PF01556 DnaJ C terminal domain DM194_03130 PF00226 DnaJ domain DM194_03135 PF05433 Glycine zipper 2TM domain DM194_03135 PF16998 17 kDa outer membrane surface antigen DM194_03140 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region DM194_03140 PF01243 Pyridoxamine 5'-phosphate oxidase DM194_03145 PF01545 Cation efflux family DM194_03145 PF16916 Dimerisation domain of Zinc Transporter DM194_03150 PF00672 HAMP domain DM194_03150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_03155 PF00753 Metallo-beta-lactamase superfamily DM194_03155 PF12706 Beta-lactamase superfamily domain DM194_03160 PF03600 Citrate transporter DM194_03165 PF01966 HD domain DM194_03165 PF00672 HAMP domain DM194_03170 PF01924 Hydrogenase formation hypA family DM194_03180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_03185 PF13673 Acetyltransferase (GNAT) domain DM194_03200 PF05974 Domain of unknown function (DUF892) DM194_03215 PF05443 ROS/MUCR transcriptional regulator protein DM194_03220 PF02502 Ribose/Galactose Isomerase DM194_03225 PF00464 Serine hydroxymethyltransferase DM194_03230 PF03477 ATP cone domain DM194_03235 PF03030 Inorganic H+ pyrophosphatase DM194_03245 PF00586 AIR synthase related protein, N-terminal domain DM194_03245 PF02769 AIR synthase related protein, C-terminal domain DM194_03250 PF01029 NusB family DM194_03255 PF00885 6,7-dimethyl-8-ribityllumazine synthase DM194_03260 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DM194_03260 PF00925 GTP cyclohydrolase II DM194_03265 PF00677 Lumazine binding domain DM194_03270 PF01872 RibD C-terminal domain DM194_03270 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DM194_03290 PF01783 Ribosomal L32p protein family DM194_03295 PF02504 Fatty acid synthesis protein DM194_03300 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DM194_03300 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DM194_03305 PF00216 Bacterial DNA-binding protein DM194_03310 PF13411 MerR HTH family regulatory protein DM194_03320 PF13395 HNH endonuclease DM194_03320 PF18541 RuvC endonuclease subdomain 3 DM194_03330 PF09827 CRISPR associated protein Cas2 DM194_03340 PF02566 OsmC-like protein DM194_03345 PF01047 MarR family DM194_03350 PF00583 Acetyltransferase (GNAT) family DM194_03360 PF05175 Methyltransferase small domain DM194_03365 PF03960 ArsC family DM194_03370 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DM194_03370 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DM194_03385 PF00892 EamA-like transporter family DM194_03390 PF00117 Glutamine amidotransferase class-I DM194_03390 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DM194_03395 PF09424 Yqey-like protein DM194_03405 PF13662 Toprim domain DM194_03405 PF08275 DNA primase catalytic core, N-terminal domain DM194_03405 PF01807 CHC2 zinc finger DM194_03405 PF10410 DnaB-helicase binding domain of primase DM194_03405 PF08278 DNA primase DnaG DnaB-binding DM194_03410 PF04539 Sigma-70 region 3 DM194_03410 PF04542 Sigma-70 region 2 DM194_03410 PF00140 Sigma-70 factor, region 1.2 DM194_03410 PF03979 Sigma-70 factor, region 1.1 DM194_03410 PF04546 Sigma-70, non-essential region DM194_03410 PF04545 Sigma-70, region 4 DM194_03420 PF04542 Sigma-70 region 2 DM194_03420 PF08281 Sigma-70, region 4 DM194_03440 PF00107 Zinc-binding dehydrogenase DM194_03440 PF13823 Alcohol dehydrogenase GroES-associated DM194_03440 PF08240 Alcohol dehydrogenase GroES-like domain DM194_03450 PF00128 Alpha amylase, catalytic domain DM194_03450 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DM194_03450 PF11941 Domain of unknown function (DUF3459) DM194_03470 PF01522 Polysaccharide deacetylase DM194_03475 PF11154 Protein of unknown function (DUF2934) DM194_03475 PF00430 ATP synthase B/B' CF(0) DM194_03485 PF05951 Bacterial protein of unknown function (DUF882) DM194_03505 PF01220 Dehydroquinase class II DM194_03510 PF00364 Biotin-requiring enzyme DM194_03515 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DM194_03515 PF02785 Biotin carboxylase C-terminal domain DM194_03515 PF00289 Biotin carboxylase, N-terminal domain DM194_03520 PF08447 PAS fold DM194_03520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_03525 PF00072 Response regulator receiver domain DM194_03535 PF04891 NifQ DM194_03545 PF01894 Uncharacterised protein family UPF0047 DM194_03550 PF13180 PDZ domain DM194_03555 PF00486 Transcriptional regulatory protein, C terminal DM194_03555 PF00072 Response regulator receiver domain DM194_03560 PF00512 His Kinase A (phospho-acceptor) domain DM194_03560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_03560 PF00672 HAMP domain DM194_03565 PF01594 AI-2E family transporter DM194_03570 PF07690 Major Facilitator Superfamily DM194_03575 PF00334 Nucleoside diphosphate kinase DM194_03590 PF08448 PAS fold DM194_03590 PF00072 Response regulator receiver domain DM194_03590 PF13188 PAS domain DM194_03590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_03590 PF00512 His Kinase A (phospho-acceptor) domain DM194_03595 PF00072 Response regulator receiver domain DM194_03595 PF00486 Transcriptional regulatory protein, C terminal DM194_03615 PF00069 Protein kinase domain DM194_03615 PF03793 PASTA domain DM194_03625 PF13677 Membrane MotB of proton-channel complex MotA/MotB DM194_03625 PF00691 OmpA family DM194_03640 PF13847 Methyltransferase domain DM194_03640 PF10119 Predicted methyltransferase regulatory domain DM194_03700 PF10431 C-terminal, D2-small domain, of ClpB protein DM194_03700 PF17871 AAA lid domain DM194_03700 PF07724 AAA domain (Cdc48 subfamily) DM194_03700 PF00004 ATPase family associated with various cellular activities (AAA) DM194_03710 PF04717 Type VI secretion system, phage-baseplate injector DM194_03760 PF00672 HAMP domain DM194_03760 PF07228 Stage II sporulation protein E (SpoIIE) DM194_03765 PF01740 STAS domain DM194_03770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_03770 PF00072 Response regulator receiver domain DM194_03770 PF13188 PAS domain DM194_03770 PF08448 PAS fold DM194_03770 PF00512 His Kinase A (phospho-acceptor) domain DM194_03780 PF00440 Bacterial regulatory proteins, tetR family DM194_03785 PF00529 HlyD membrane-fusion protein of T1SS DM194_03785 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DM194_03790 PF00873 AcrB/AcrD/AcrF family DM194_03795 PF00425 chorismate binding enzyme DM194_03795 PF04715 Anthranilate synthase component I, N terminal region DM194_03800 PF13145 PPIC-type PPIASE domain DM194_03805 PF05532 CsbD-like DM194_03820 PF02694 Uncharacterised BCR, YnfA/UPF0060 family DM194_03830 PF00563 EAL domain DM194_03830 PF00990 Diguanylate cyclase, GGDEF domain DM194_03830 PF08447 PAS fold DM194_03830 PF08448 PAS fold DM194_03840 PF08402 TOBE domain DM194_03840 PF00005 ABC transporter DM194_03845 PF00664 ABC transporter transmembrane region DM194_03845 PF00005 ABC transporter DM194_03860 PF02080 TrkA-C domain DM194_03860 PF00999 Sodium/hydrogen exchanger family DM194_03860 PF03471 Transporter associated domain DM194_03865 PF00528 Binding-protein-dependent transport system inner membrane component DM194_03885 PF03459 TOBE domain DM194_03885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_03895 PF00672 HAMP domain DM194_03895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_03895 PF17200 Single Cache domain 2 DM194_03905 PF00625 Guanylate kinase DM194_03910 PF03755 YicC-like family, N-terminal region DM194_03910 PF08340 Domain of unknown function (DUF1732) DM194_03915 PF00106 short chain dehydrogenase DM194_03925 PF01612 3'-5' exonuclease DM194_03925 PF00570 HRDC domain DM194_03930 PF02938 GAD domain DM194_03930 PF00152 tRNA synthetases class II (D, K and N) DM194_03930 PF01336 OB-fold nucleic acid binding domain DM194_03935 PF00318 Ribosomal protein S2 DM194_03940 PF00889 Elongation factor TS DM194_03945 PF00696 Amino acid kinase family DM194_03950 PF01765 Ribosome recycling factor DM194_03955 PF01255 Putative undecaprenyl diphosphate synthase DM194_03965 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DM194_03965 PF13288 DXP reductoisomerase C-terminal domain DM194_03965 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase DM194_03970 PF17820 PDZ domain DM194_03970 PF02163 Peptidase family M50 DM194_03975 PF07244 Surface antigen variable number repeat DM194_03975 PF01103 Surface antigen DM194_03985 PF07977 FabA-like domain DM194_03990 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DM194_03990 PF00132 Bacterial transferase hexapeptide (six repeats) DM194_03995 PF06230 LpxI C-terminal domain DM194_03995 PF17930 LpxI N-terminal domain DM194_04000 PF02684 Lipid-A-disaccharide synthetase DM194_04005 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DM194_04010 PF01965 DJ-1/PfpI family DM194_04020 PF00285 Citrate synthase, C-terminal domain DM194_04025 PF00749 tRNA synthetases class I (E and Q), catalytic domain DM194_04030 PF13567 Domain of unknown function (DUF4131) DM194_04030 PF03772 Competence protein DM194_04030 PF00753 Metallo-beta-lactamase superfamily DM194_04035 PF00717 Peptidase S24-like DM194_04035 PF01726 LexA DNA binding domain DM194_04040 PF03454 MoeA C-terminal region (domain IV) DM194_04040 PF00994 Probable molybdopterin binding domain DM194_04040 PF03453 MoeA N-terminal region (domain I and II) DM194_04045 PF01967 MoaC family DM194_04050 PF00583 Acetyltransferase (GNAT) family DM194_04055 PF00218 Indole-3-glycerol phosphate synthase DM194_04060 PF02885 Glycosyl transferase family, helical bundle domain DM194_04060 PF00591 Glycosyl transferase family, a/b domain DM194_04065 PF00117 Glutamine amidotransferase class-I DM194_04090 PF01551 Peptidase family M23 DM194_04090 PF01464 Transglycosylase SLT domain DM194_04090 PF10145 Phage-related minor tail protein DM194_04095 PF00701 Dihydrodipicolinate synthetase family DM194_04100 PF01668 SmpB protein DM194_04105 PF08468 Methyltransferase small domain N-terminal DM194_04105 PF05175 Methyltransferase small domain DM194_04115 PF00490 Delta-aminolevulinic acid dehydratase DM194_04125 PF00781 Diacylglycerol kinase catalytic domain DM194_04130 PF00378 Enoyl-CoA hydratase/isomerase DM194_04135 PF12802 MarR family DM194_04155 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ DM194_04165 PF05401 Nodulation protein S (NodS) DM194_04170 PF13439 Glycosyltransferase Family 4 DM194_04170 PF00534 Glycosyl transferases group 1 DM194_04190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_04190 PF00672 HAMP domain DM194_04195 PF04542 Sigma-70 region 2 DM194_04195 PF08281 Sigma-70, region 4 DM194_04200 PF00583 Acetyltransferase (GNAT) family DM194_04205 PF00343 Carbohydrate phosphorylase DM194_04210 PF01118 Semialdehyde dehydrogenase, NAD binding domain DM194_04210 PF02774 Semialdehyde dehydrogenase, dimerisation domain DM194_04215 PF00009 Elongation factor Tu GTP binding domain DM194_04215 PF16658 Class II release factor RF3, C-terminal domain DM194_04220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_04220 PF00512 His Kinase A (phospho-acceptor) domain DM194_04220 PF02743 Cache domain DM194_04225 PF00072 Response regulator receiver domain DM194_04225 PF02954 Bacterial regulatory protein, Fis family DM194_04225 PF00158 Sigma-54 interaction domain DM194_04230 PF08379 Bacterial transglutaminase-like N-terminal region DM194_04230 PF01841 Transglutaminase-like superfamily DM194_04235 PF14403 Circularly permuted ATP-grasp type 2 DM194_04235 PF04168 A predicted alpha-helical domain with a conserved ER motif. DM194_04270 PF03466 LysR substrate binding domain DM194_04270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_04280 PF00069 Protein kinase domain DM194_04285 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DM194_04295 PF13617 YnbE-like lipoprotein DM194_04320 PF03435 Saccharopine dehydrogenase NADP binding domain DM194_04320 PF16653 Saccharopine dehydrogenase C-terminal domain DM194_04330 PF03079 ARD/ARD' family DM194_04335 PF07690 Major Facilitator Superfamily DM194_04340 PF02403 Seryl-tRNA synthetase N-terminal domain DM194_04340 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DM194_04345 PF01975 Survival protein SurE DM194_04355 PF01551 Peptidase family M23 DM194_04355 PF01476 LysM domain DM194_04365 PF02699 Preprotein translocase subunit DM194_04370 PF07549 SecD/SecF GG Motif DM194_04370 PF02355 Protein export membrane protein DM194_04375 PF02355 Protein export membrane protein DM194_04375 PF07549 SecD/SecF GG Motif DM194_04380 PF04430 Protein of unknown function (DUF498/DUF598) DM194_04385 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DM194_04385 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DM194_04390 PF01593 Flavin containing amine oxidoreductase DM194_04410 PF01134 Glucose inhibited division protein A DM194_04430 PF17755 UvrA DNA-binding domain DM194_04430 PF17760 UvrA interaction domain DM194_04440 PF00300 Histidine phosphatase superfamily (branch 1) DM194_04445 PF17941 Polyphosphate kinase C-terminal domain 1 DM194_04445 PF13089 Polyphosphate kinase N-terminal domain DM194_04445 PF13090 Polyphosphate kinase C-terminal domain 2 DM194_04445 PF02503 Polyphosphate kinase middle domain DM194_04450 PF02541 Ppx/GppA phosphatase family DM194_04465 PF13735 tRNA nucleotidyltransferase domain 2 putative DM194_04465 PF12627 Probable RNA and SrmB- binding site of polymerase A DM194_04465 PF01743 Poly A polymerase head domain DM194_04470 PF00293 NUDIX domain DM194_04480 PF07726 ATPase family associated with various cellular activities (AAA) DM194_04480 PF17863 AAA lid domain DM194_04510 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DM194_04510 PF03625 Domain of unknown function DUF302 DM194_04530 PF00753 Metallo-beta-lactamase superfamily DM194_04535 PF01022 Bacterial regulatory protein, arsR family DM194_04540 PF04143 Sulphur transport DM194_04550 PF01925 Sulfite exporter TauE/SafE DM194_04555 PF00436 Single-strand binding protein family DM194_04585 PF00850 Histone deacetylase domain DM194_04590 PF00005 ABC transporter DM194_04595 PF00528 Binding-protein-dependent transport system inner membrane component DM194_04600 PF09084 NMT1/THI5 like DM194_04610 PF00459 Inositol monophosphatase family DM194_04625 PF13167 GTP-binding GTPase N-terminal DM194_04625 PF16360 GTP-binding GTPase Middle Region DM194_04625 PF01926 50S ribosome-binding GTPase DM194_04630 PF17209 Hfq protein DM194_04640 PF00158 Sigma-54 interaction domain DM194_04640 PF02954 Bacterial regulatory protein, Fis family DM194_04640 PF00072 Response regulator receiver domain DM194_04645 PF00672 HAMP domain DM194_04645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_04650 PF00158 Sigma-54 interaction domain DM194_04650 PF00072 Response regulator receiver domain DM194_04650 PF02954 Bacterial regulatory protein, Fis family DM194_04655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_04655 PF00989 PAS fold DM194_04655 PF00512 His Kinase A (phospho-acceptor) domain DM194_04660 PF01207 Dihydrouridine synthase (Dus) DM194_04665 PF01578 Cytochrome C assembly protein DM194_04670 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DM194_04670 PF02542 YgbB family DM194_04675 PF00994 Probable molybdopterin binding domain DM194_04675 PF02464 Competence-damaged protein DM194_04680 PF01361 Tautomerase enzyme DM194_04685 PF03364 Polyketide cyclase / dehydrase and lipid transport DM194_04690 PF04055 Radical SAM superfamily DM194_04690 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family DM194_04700 PF07992 Pyridine nucleotide-disulphide oxidoreductase DM194_04700 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DM194_04710 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DM194_04710 PF02817 e3 binding domain DM194_04710 PF00364 Biotin-requiring enzyme DM194_04715 PF02780 Transketolase, C-terminal domain DM194_04715 PF02779 Transketolase, pyrimidine binding domain DM194_04715 PF00364 Biotin-requiring enzyme DM194_04720 PF00676 Dehydrogenase E1 component DM194_04735 PF00005 ABC transporter DM194_04735 PF03459 TOBE domain DM194_04740 PF00528 Binding-protein-dependent transport system inner membrane component DM194_04750 PF00834 Ribulose-phosphate 3 epimerase family DM194_04760 PF04226 Transglycosylase associated protein DM194_04765 PF00072 Response regulator receiver domain DM194_04765 PF03861 ANTAR domain DM194_04775 PF02586 SOS response associated peptidase (SRAP) DM194_04780 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DM194_04780 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DM194_04785 PF00563 EAL domain DM194_04785 PF12792 CSS motif domain associated with EAL DM194_04795 PF00459 Inositol monophosphatase family DM194_04800 PF04305 Protein of unknown function (DUF455) DM194_04805 PF01636 Phosphotransferase enzyme family DM194_04810 PF00075 RNase H DM194_04815 PF08534 Redoxin DM194_04820 PF08274 PhnA Zinc-Ribbon DM194_04820 PF03831 PhnA domain DM194_04825 PF02683 Cytochrome C biogenesis protein transmembrane region DM194_04825 PF11412 Disulphide bond corrector protein DsbC DM194_04830 PF02622 Uncharacterized ACR, COG1678 DM194_04835 PF02391 MoaE protein DM194_04840 PF02597 ThiS family DM194_04845 PF00994 Probable molybdopterin binding domain DM194_04845 PF03454 MoeA C-terminal region (domain IV) DM194_04845 PF03453 MoeA N-terminal region (domain I and II) DM194_04850 PF13419 Haloacid dehalogenase-like hydrolase DM194_04855 PF03205 Molybdopterin guanine dinucleotide synthesis protein B DM194_04860 PF01066 CDP-alcohol phosphatidyltransferase DM194_04865 PF12826 Helix-hairpin-helix motif DM194_04865 PF02151 UvrB/uvrC motif DM194_04865 PF01541 GIY-YIG catalytic domain DM194_04865 PF08459 UvrC Helix-hairpin-helix N-terminal DM194_04895 PF02653 Branched-chain amino acid transport system / permease component DM194_04900 PF00005 ABC transporter DM194_04905 PF00999 Sodium/hydrogen exchanger family DM194_04905 PF02254 TrkA-N domain DM194_04925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_04925 PF03466 LysR substrate binding domain DM194_04930 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DM194_04930 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DM194_04935 PF01979 Amidohydrolase family DM194_04940 PF02660 Glycerol-3-phosphate acyltransferase DM194_04945 PF13193 AMP-binding enzyme C-terminal domain DM194_04945 PF00501 AMP-binding enzyme DM194_04955 PF03741 Integral membrane protein TerC family DM194_04960 PF00216 Bacterial DNA-binding protein DM194_04965 PF05443 ROS/MUCR transcriptional regulator protein DM194_04970 PF00140 Sigma-70 factor, region 1.2 DM194_04970 PF04542 Sigma-70 region 2 DM194_04970 PF04545 Sigma-70, region 4 DM194_05010 PF01464 Transglycosylase SLT domain DM194_05015 PF00271 Helicase conserved C-terminal domain DM194_05015 PF17757 UvrB interaction domain DM194_05015 PF12344 Ultra-violet resistance protein B DM194_05015 PF02151 UvrB/uvrC motif DM194_05015 PF04851 Type III restriction enzyme, res subunit DM194_05030 PF07238 PilZ domain DM194_05030 PF03552 Cellulose synthase DM194_05030 PF00535 Glycosyl transferase family 2 DM194_05040 PF00266 Aminotransferase class-V DM194_05045 PF02347 Glycine cleavage system P-protein DM194_05050 PF01597 Glycine cleavage H-protein DM194_05055 PF08669 Glycine cleavage T-protein C-terminal barrel domain DM194_05055 PF01571 Aminomethyltransferase folate-binding domain DM194_05065 PF02401 LytB protein DM194_05070 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DM194_05070 PF07685 CobB/CobQ-like glutamine amidotransferase domain DM194_05075 PF12557 Cob(I)alamin adenosyltransferase N terminal DM194_05075 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP DM194_05080 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase DM194_05105 PF01554 MatE DM194_05110 PF00521 DNA gyrase/topoisomerase IV, subunit A DM194_05110 PF03989 DNA gyrase C-terminal domain, beta-propeller DM194_05115 PF01467 Cytidylyltransferase-like DM194_05145 PF00005 ABC transporter DM194_05145 PF12704 MacB-like periplasmic core domain DM194_05145 PF02687 FtsX-like permease family DM194_05150 PF00005 ABC transporter DM194_05155 PF00529 HlyD membrane-fusion protein of T1SS DM194_05155 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DM194_05165 PF00793 DAHP synthetase I family DM194_05170 PF01738 Dienelactone hydrolase family DM194_05175 PF06418 CTP synthase N-terminus DM194_05175 PF00117 Glutamine amidotransferase class-I DM194_05180 PF03840 Preprotein translocase SecG subunit DM194_05185 PF00121 Triosephosphate isomerase DM194_05190 PF12802 MarR family DM194_05200 PF00486 Transcriptional regulatory protein, C terminal DM194_05200 PF00072 Response regulator receiver domain DM194_05205 PF00672 HAMP domain DM194_05205 PF00512 His Kinase A (phospho-acceptor) domain DM194_05205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_05210 PF00117 Glutamine amidotransferase class-I DM194_05210 PF00425 chorismate binding enzyme DM194_05210 PF04715 Anthranilate synthase component I, N terminal region DM194_05215 PF01895 PhoU domain DM194_05230 PF00795 Carbon-nitrogen hydrolase DM194_05240 PF00850 Histone deacetylase domain DM194_05245 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DM194_05245 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DM194_05245 PF10531 SLBB domain DM194_05250 PF00535 Glycosyl transferase family 2 DM194_05255 PF01381 Helix-turn-helix DM194_05295 PF12802 MarR family DM194_05300 PF00106 short chain dehydrogenase DM194_05310 PF01594 AI-2E family transporter DM194_05315 PF01066 CDP-alcohol phosphatidyltransferase DM194_05325 PF02769 AIR synthase related protein, C-terminal domain DM194_05325 PF00586 AIR synthase related protein, N-terminal domain DM194_05330 PF00551 Formyl transferase DM194_05340 PF00106 short chain dehydrogenase DM194_05345 PF13537 Glutamine amidotransferase domain DM194_05345 PF00156 Phosphoribosyl transferase domain DM194_05355 PF06745 KaiC DM194_05355 PF18073 Rubredoxin metal binding domain DM194_05360 PF00557 Metallopeptidase family M24 DM194_05375 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DM194_05375 PF01926 50S ribosome-binding GTPase DM194_05390 PF00072 Response regulator receiver domain DM194_05390 PF00196 Bacterial regulatory proteins, luxR family DM194_05400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_05400 PF17202 Single cache domain 3 DM194_05400 PF00672 HAMP domain DM194_05405 PF01588 Putative tRNA binding domain DM194_05425 PF03807 NADP oxidoreductase coenzyme F420-dependent DM194_05425 PF14748 Pyrroline-5-carboxylate reductase dimerisation DM194_05460 PF08240 Alcohol dehydrogenase GroES-like domain DM194_05460 PF00698 Acyl transferase domain DM194_05460 PF08659 KR domain DM194_05460 PF16197 Ketoacyl-synthetase C-terminal extension DM194_05460 PF00109 Beta-ketoacyl synthase, N-terminal domain DM194_05460 PF02801 Beta-ketoacyl synthase, C-terminal domain DM194_05460 PF14765 Polyketide synthase dehydratase DM194_05460 PF00550 Phosphopantetheine attachment site DM194_05460 PF00107 Zinc-binding dehydrogenase DM194_05470 PF02441 Flavoprotein DM194_05475 PF00484 Carbonic anhydrase DM194_05495 PF00365 Phosphofructokinase DM194_05510 PF00731 AIR carboxylase DM194_05515 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain DM194_05515 PF02222 ATP-grasp domain DM194_05520 PF13426 PAS domain DM194_05520 PF00990 Diguanylate cyclase, GGDEF domain DM194_05520 PF00563 EAL domain DM194_05540 PF10415 Fumarase C C-terminus DM194_05540 PF00206 Lyase DM194_05565 PF13406 Transglycosylase SLT domain DM194_05585 PF02743 Cache domain DM194_05585 PF00512 His Kinase A (phospho-acceptor) domain DM194_05585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_05595 PF02074 Carboxypeptidase Taq (M32) metallopeptidase DM194_05600 PF02104 SURF1 family DM194_05610 PF00510 Cytochrome c oxidase subunit III DM194_05615 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 DM194_05625 PF01040 UbiA prenyltransferase family DM194_05630 PF00115 Cytochrome C and Quinol oxidase polypeptide I DM194_05635 PF02790 Cytochrome C oxidase subunit II, transmembrane domain DM194_05635 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DM194_05645 PF01523 Putative modulator of DNA gyrase DM194_05650 PF08335 GlnD PII-uridylyltransferase DM194_05650 PF01909 Nucleotidyltransferase domain DM194_05650 PF01842 ACT domain DM194_05650 PF01966 HD domain DM194_05655 PF00893 Small Multidrug Resistance protein DM194_05665 PF00271 Helicase conserved C-terminal domain DM194_05665 PF02559 CarD-like/TRCF domain DM194_05665 PF03461 TRCF domain DM194_05665 PF00270 DEAD/DEAH box helicase DM194_05665 PF17757 UvrB interaction domain DM194_05695 PF00154 recA bacterial DNA recombination protein DM194_05700 PF08448 PAS fold DM194_05700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_05700 PF00072 Response regulator receiver domain DM194_05700 PF00512 His Kinase A (phospho-acceptor) domain DM194_05700 PF13188 PAS domain DM194_05705 PF01312 FlhB HrpN YscU SpaS Family DM194_05710 PF01311 Bacterial export proteins, family 1 DM194_05715 PF01313 Bacterial export proteins, family 3 DM194_05720 PF02049 Flagellar hook-basal body complex protein FliE DM194_05725 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DM194_05730 PF00460 Flagella basal body rod protein DM194_05735 PF01312 FlhB HrpN YscU SpaS Family DM194_05750 PF00813 FliP family DM194_05755 PF02705 K+ potassium transporter DM194_05760 PF02469 Fasciclin domain DM194_05770 PF13677 Membrane MotB of proton-channel complex MotA/MotB DM194_05770 PF00691 OmpA family DM194_05785 PF01734 Patatin-like phospholipase DM194_05790 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) DM194_05790 PF00413 Matrixin DM194_05790 PF08548 Peptidase M10 serralysin C terminal DM194_05795 PF01728 FtsJ-like methyltransferase DM194_05795 PF18125 RlmM ferredoxin-like domain DM194_05810 PF07650 KH domain DM194_05810 PF01926 50S ribosome-binding GTPase DM194_05815 PF14622 Ribonuclease-III-like DM194_05815 PF00035 Double-stranded RNA binding motif DM194_05820 PF10502 Signal peptidase, peptidase S26 DM194_05825 PF01648 4'-phosphopantetheinyl transferase superfamily DM194_05830 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ DM194_05835 PF02824 TGS domain DM194_05835 PF13291 ACT domain DM194_05835 PF04607 Region found in RelA / SpoT proteins DM194_05840 PF01192 RNA polymerase Rpb6 DM194_05855 PF04166 Pyridoxal phosphate biosynthetic protein PdxA DM194_05860 PF00639 PPIC-type PPIASE domain DM194_05860 PF09312 SurA N-terminal domain DM194_05870 PF00583 Acetyltransferase (GNAT) family DM194_05875 PF02540 NAD synthase DM194_05875 PF00958 GMP synthase C terminal domain DM194_05875 PF00117 Glutamine amidotransferase class-I DM194_05895 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DM194_05900 PF00873 AcrB/AcrD/AcrF family DM194_05910 PF00588 SpoU rRNA Methylase family DM194_05920 PF01566 Natural resistance-associated macrophage protein DM194_05925 PF04102 SlyX DM194_05935 PF06832 Penicillin-Binding Protein C-terminus Family DM194_05935 PF00905 Penicillin binding protein transpeptidase domain DM194_05935 PF00912 Transglycosylase DM194_05940 PF00207 Alpha-2-macroglobulin family DM194_05940 PF07703 Alpha-2-macroglobulin bait region domain DM194_05940 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain DM194_05940 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain DM194_05940 PF01835 MG2 domain DM194_05940 PF17962 Bacterial macroglobulin domain 6 DM194_05940 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain DM194_05940 PF11974 Bacterial alpha-2-macroglobulin MG3 domain DM194_05945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_05945 PF03466 LysR substrate binding domain DM194_05950 PF00994 Probable molybdopterin binding domain DM194_05950 PF03454 MoeA C-terminal region (domain IV) DM194_05950 PF03453 MoeA N-terminal region (domain I and II) DM194_05955 PF03091 CutA1 divalent ion tolerance protein DM194_05965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_05965 PF00512 His Kinase A (phospho-acceptor) domain DM194_05975 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded DM194_05980 PF01842 ACT domain DM194_05980 PF03447 Homoserine dehydrogenase, NAD binding domain DM194_05980 PF00742 Homoserine dehydrogenase DM194_05985 PF00155 Aminotransferase class I and II DM194_05990 PF13426 PAS domain DM194_05990 PF08447 PAS fold DM194_05990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_06000 PF01343 Peptidase family S49 DM194_06005 PF12848 ABC transporter DM194_06005 PF00005 ABC transporter DM194_06010 PF06055 Exopolysaccharide synthesis, ExoD DM194_06020 PF05188 MutS domain II DM194_06020 PF01624 MutS domain I DM194_06020 PF00488 MutS domain V DM194_06020 PF05192 MutS domain III DM194_06020 PF05190 MutS family domain IV DM194_06025 PF08264 Anticodon-binding domain of tRNA DM194_06025 PF00133 tRNA synthetases class I (I, L, M and V) DM194_06025 PF10458 Valyl tRNA synthetase tRNA binding arm DM194_06035 PF02321 Outer membrane efflux protein DM194_06055 PF02796 Helix-turn-helix domain of resolvase DM194_06055 PF00239 Resolvase, N terminal domain DM194_06075 PF02498 BRO family, N-terminal domain DM194_06075 PF10548 P22AR C-terminal domain DM194_06080 PF00589 Phage integrase family DM194_06110 PF00595 PDZ domain DM194_06115 PF00293 NUDIX domain DM194_06120 PF00291 Pyridoxal-phosphate dependent enzyme DM194_06120 PF00571 CBS domain DM194_06125 PF02272 DHHA1 domain DM194_06125 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DM194_06125 PF01411 tRNA synthetases class II (A) DM194_06130 PF00581 Rhodanese-like domain DM194_06150 PF00155 Aminotransferase class I and II DM194_06155 PF00005 ABC transporter DM194_06160 PF00528 Binding-protein-dependent transport system inner membrane component DM194_06165 PF00528 Binding-protein-dependent transport system inner membrane component DM194_06170 PF00497 Bacterial extracellular solute-binding proteins, family 3 DM194_06175 PF01053 Cys/Met metabolism PLP-dependent enzyme DM194_06180 PF01502 Phosphoribosyl-AMP cyclohydrolase DM194_06195 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DM194_06205 PF04377 Arginine-tRNA-protein transferase, C terminus DM194_06205 PF04376 Arginine-tRNA-protein transferase, N terminus DM194_06210 PF14403 Circularly permuted ATP-grasp type 2 DM194_06210 PF04168 A predicted alpha-helical domain with a conserved ER motif. DM194_06215 PF14403 Circularly permuted ATP-grasp type 2 DM194_06220 PF13677 Membrane MotB of proton-channel complex MotA/MotB DM194_06220 PF00691 OmpA family DM194_06225 PF01613 Flavin reductase like domain DM194_06245 PF00501 AMP-binding enzyme DM194_06245 PF13193 AMP-binding enzyme C-terminal domain DM194_06250 PF13411 MerR HTH family regulatory protein DM194_06270 PF02743 Cache domain DM194_06270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_06270 PF00512 His Kinase A (phospho-acceptor) domain DM194_06275 PF00512 His Kinase A (phospho-acceptor) domain DM194_06275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_06285 PF01053 Cys/Met metabolism PLP-dependent enzyme DM194_06295 PF01545 Cation efflux family DM194_06300 PF02566 OsmC-like protein DM194_06305 PF06082 Exopolysaccharide biosynthesis protein YbjH DM194_06315 PF07043 Protein of unknown function (DUF1328) DM194_06320 PF08281 Sigma-70, region 4 DM194_06320 PF04542 Sigma-70 region 2 DM194_06325 PF01464 Transglycosylase SLT domain DM194_06340 PF01209 ubiE/COQ5 methyltransferase family DM194_06350 PF00270 DEAD/DEAH box helicase DM194_06350 PF00271 Helicase conserved C-terminal domain DM194_06360 PF12697 Alpha/beta hydrolase family DM194_06375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_06375 PF00986 DNA gyrase B subunit, carboxyl terminus DM194_06375 PF01751 Toprim domain DM194_06375 PF00204 DNA gyrase B DM194_06380 PF03061 Thioesterase superfamily DM194_06395 PF00528 Binding-protein-dependent transport system inner membrane component DM194_06400 PF00005 ABC transporter DM194_06405 PF01434 Peptidase family M41 DM194_06405 PF06480 FtsH Extracellular DM194_06405 PF00004 ATPase family associated with various cellular activities (AAA) DM194_06405 PF17862 AAA+ lid domain DM194_06410 PF00486 Transcriptional regulatory protein, C terminal DM194_06410 PF00072 Response regulator receiver domain DM194_06420 PF11849 Domain of unknown function (DUF3369) DM194_06425 PF12282 Signal transduction histidine kinase DM194_06425 PF07568 Histidine kinase DM194_06425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_06430 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase DM194_06460 PF00270 DEAD/DEAH box helicase DM194_06460 PF00271 Helicase conserved C-terminal domain DM194_06460 PF17191 RecG wedge domain DM194_06465 PF01627 Hpt domain DM194_06465 PF07194 P2 response regulator binding domain DM194_06465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_06465 PF02895 Signal transducing histidine kinase, homodimeric domain DM194_06465 PF01584 CheW-like domain DM194_06470 PF01339 CheB methylesterase DM194_06470 PF00072 Response regulator receiver domain DM194_06475 PF01339 CheB methylesterase DM194_06475 PF00072 Response regulator receiver domain DM194_06480 PF01584 CheW-like domain DM194_06485 PF01339 CheB methylesterase DM194_06485 PF03705 CheR methyltransferase, all-alpha domain DM194_06485 PF01739 CheR methyltransferase, SAM binding domain DM194_06485 PF08448 PAS fold DM194_06490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_06490 PF17202 Single cache domain 3 DM194_06490 PF00672 HAMP domain DM194_06495 PF00672 HAMP domain DM194_06495 PF17202 Single cache domain 3 DM194_06495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_06510 PF02618 YceG-like family DM194_06515 PF00109 Beta-ketoacyl synthase, N-terminal domain DM194_06515 PF02801 Beta-ketoacyl synthase, C-terminal domain DM194_06520 PF00550 Phosphopantetheine attachment site DM194_06530 PF00698 Acyl transferase domain DM194_06540 PF01250 Ribosomal protein S6 DM194_06545 PF01084 Ribosomal protein S18 DM194_06555 PF03948 Ribosomal protein L9, C-terminal domain DM194_06555 PF01281 Ribosomal protein L9, N-terminal domain DM194_06565 PF00180 Isocitrate/isopropylmalate dehydrogenase DM194_06575 PF01145 SPFH domain / Band 7 family DM194_06575 PF16200 C-terminal region of band_7 DM194_06595 PF04542 Sigma-70 region 2 DM194_06595 PF08281 Sigma-70, region 4 DM194_06600 PF00180 Isocitrate/isopropylmalate dehydrogenase DM194_06600 PF18324 Hypothetical protein TT1725 DM194_06605 PF07731 Multicopper oxidase DM194_06605 PF07732 Multicopper oxidase DM194_06630 PF13291 ACT domain DM194_06630 PF04607 Region found in RelA / SpoT proteins DM194_06630 PF02824 TGS domain DM194_06635 PF13746 4Fe-4S dicluster domain DM194_06635 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase DM194_06635 PF12801 4Fe-4S binding domain DM194_06640 PF08335 GlnD PII-uridylyltransferase DM194_06640 PF01966 HD domain DM194_06640 PF01909 Nucleotidyltransferase domain DM194_06655 PF05036 Sporulation related domain DM194_06655 PF03330 Lytic transglycolase DM194_06660 PF00768 D-alanyl-D-alanine carboxypeptidase DM194_06660 PF07943 Penicillin-binding protein 5, C-terminal domain DM194_06665 PF02223 Thymidylate kinase DM194_06670 PF12169 DNA polymerase III subunits gamma and tau domain III DM194_06675 PF08264 Anticodon-binding domain of tRNA DM194_06675 PF09334 tRNA synthetases class I (M) DM194_06680 PF01026 TatD related DNase DM194_06685 PF03099 Biotin/lipoate A/B protein ligase family DM194_06685 PF12706 Beta-lactamase superfamily domain DM194_06700 PF03480 Bacterial extracellular solute-binding protein, family 7 DM194_06725 PF03707 Bacterial signalling protein N terminal repeat DM194_06725 PF00563 EAL domain DM194_06725 PF00990 Diguanylate cyclase, GGDEF domain DM194_06730 PF02565 Recombination protein O C terminal DM194_06730 PF11967 Recombination protein O N terminal DM194_06735 PF00521 DNA gyrase/topoisomerase IV, subunit A DM194_06735 PF03989 DNA gyrase C-terminal domain, beta-propeller DM194_06750 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DM194_06750 PF02154 Flagellar motor switch protein FliM DM194_06760 PF00460 Flagella basal body rod protein DM194_06760 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DM194_06765 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DM194_06765 PF00460 Flagella basal body rod protein DM194_06775 PF02107 Flagellar L-ring protein DM194_06795 PF01258 Prokaryotic dksA/traR C4-type zinc finger DM194_06800 PF10768 Class II flagellar assembly regulator DM194_06805 PF02119 Flagellar P-ring protein DM194_06840 PF07977 FabA-like domain DM194_06845 PF03480 Bacterial extracellular solute-binding protein, family 7 DM194_06850 PF01048 Phosphorylase superfamily DM194_06860 PF00378 Enoyl-CoA hydratase/isomerase DM194_06865 PF13426 PAS domain DM194_06865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_06865 PF08447 PAS fold DM194_06875 PF17782 DprA winged helix domain DM194_06875 PF02481 DNA recombination-mediator protein A DM194_06880 PF01131 DNA topoisomerase DM194_06880 PF01751 Toprim domain DM194_06880 PF13368 Topoisomerase C-terminal repeat DM194_06880 PF01396 Topoisomerase DNA binding C4 zinc finger DM194_06890 PF00378 Enoyl-CoA hydratase/isomerase DM194_06895 PF13380 CoA binding domain DM194_06900 PF01053 Cys/Met metabolism PLP-dependent enzyme DM194_06925 PF00472 RF-1 domain DM194_06930 PF00398 Ribosomal RNA adenine dimethylase DM194_06955 PF00271 Helicase conserved C-terminal domain DM194_06955 PF04434 SWIM zinc finger DM194_06955 PF00176 SNF2 family N-terminal domain DM194_06965 PF00072 Response regulator receiver domain DM194_06965 PF00990 Diguanylate cyclase, GGDEF domain DM194_06970 PF00072 Response regulator receiver domain DM194_06975 PF08447 PAS fold DM194_06975 PF08448 PAS fold DM194_06975 PF13426 PAS domain DM194_06975 PF00990 Diguanylate cyclase, GGDEF domain DM194_06975 PF05231 MASE1 DM194_06975 PF00563 EAL domain DM194_06980 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DM194_06980 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DM194_06995 PF12002 MgsA AAA+ ATPase C terminal DM194_06995 PF16193 AAA C-terminal domain DM194_06995 PF00004 ATPase family associated with various cellular activities (AAA) DM194_07010 PF09335 SNARE associated Golgi protein DM194_07015 PF01196 Ribosomal protein L17 DM194_07020 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DM194_07020 PF01000 RNA polymerase Rpb3/RpoA insert domain DM194_07020 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DM194_07025 PF00411 Ribosomal protein S11 DM194_07030 PF00416 Ribosomal protein S13/S18 DM194_07045 PF03144 Elongation factor Tu domain 2 DM194_07045 PF14492 Elongation Factor G, domain II DM194_07045 PF00679 Elongation factor G C-terminus DM194_07045 PF00009 Elongation factor Tu GTP binding domain DM194_07045 PF03764 Elongation factor G, domain IV DM194_07050 PF01042 Endoribonuclease L-PSP DM194_07055 PF00089 Trypsin DM194_07060 PF01131 DNA topoisomerase DM194_07060 PF01751 Toprim domain DM194_07080 PF00216 Bacterial DNA-binding protein DM194_07085 PF02190 ATP-dependent protease La (LON) substrate-binding domain DM194_07085 PF00004 ATPase family associated with various cellular activities (AAA) DM194_07085 PF05362 Lon protease (S16) C-terminal proteolytic domain DM194_07090 PF07724 AAA domain (Cdc48 subfamily) DM194_07090 PF10431 C-terminal, D2-small domain, of ClpB protein DM194_07090 PF06689 ClpX C4-type zinc finger DM194_07095 PF00574 Clp protease DM194_07100 PF05698 Bacterial trigger factor protein (TF) C-terminus DM194_07100 PF05697 Bacterial trigger factor protein (TF) DM194_07100 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DM194_07115 PF03853 YjeF-related protein N-terminus DM194_07115 PF01256 Carbohydrate kinase DM194_07125 PF00543 Nitrogen regulatory protein P-II DM194_07130 PF00120 Glutamine synthetase, catalytic domain DM194_07130 PF03951 Glutamine synthetase, beta-Grasp domain DM194_07140 PF01695 IstB-like ATP binding protein DM194_07145 PF00665 Integrase core domain DM194_07145 PF02796 Helix-turn-helix domain of resolvase DM194_07170 PF00239 Resolvase, N terminal domain DM194_07170 PF02796 Helix-turn-helix domain of resolvase DM194_07195 PF01425 Amidase DM194_07200 PF02686 Glu-tRNAGln amidotransferase C subunit DM194_07210 PF03652 Holliday junction resolvase DM194_07220 PF02511 Thymidylate synthase complementing protein DM194_07245 PF01327 Polypeptide deformylase DM194_07250 PF01165 Ribosomal protein S21 DM194_07255 PF02548 Ketopantoate hydroxymethyltransferase DM194_07260 PF00270 DEAD/DEAH box helicase DM194_07260 PF00271 Helicase conserved C-terminal domain DM194_07260 PF08494 DEAD/H associated DM194_07265 PF00111 2Fe-2S iron-sulfur cluster binding domain DM194_07275 PF03441 FAD binding domain of DNA photolyase DM194_07275 PF00875 DNA photolyase DM194_07280 PF01475 Ferric uptake regulator family DM194_07285 PF07683 Cobalamin synthesis protein cobW C-terminal domain DM194_07285 PF02492 CobW/HypB/UreG, nucleotide-binding domain DM194_07295 PF00672 HAMP domain DM194_07295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_07295 PF17200 Single Cache domain 2 DM194_07300 PF04752 ChaC-like protein DM194_07315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_07315 PF00512 His Kinase A (phospho-acceptor) domain DM194_07325 PF00883 Cytosol aminopeptidase family, catalytic domain DM194_07325 PF02789 Cytosol aminopeptidase family, N-terminal domain DM194_07330 PF01189 16S rRNA methyltransferase RsmB/F DM194_07330 PF01029 NusB family DM194_07350 PF00512 His Kinase A (phospho-acceptor) domain DM194_07350 PF00360 Phytochrome region DM194_07350 PF08446 PAS fold DM194_07350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_07350 PF01590 GAF domain DM194_07355 PF02463 RecF/RecN/SMC N terminal domain DM194_07360 PF13525 Outer membrane lipoprotein DM194_07375 PF00072 Response regulator receiver domain DM194_07380 PF00557 Metallopeptidase family M24 DM194_07380 PF01321 Creatinase/Prolidase N-terminal domain DM194_07400 PF00580 UvrD/REP helicase N-terminal domain DM194_07400 PF13361 UvrD-like helicase C-terminal domain DM194_07405 PF00072 Response regulator receiver domain DM194_07405 PF00196 Bacterial regulatory proteins, luxR family DM194_07410 PF00196 Bacterial regulatory proteins, luxR family DM194_07410 PF00072 Response regulator receiver domain DM194_07435 PF01119 DNA mismatch repair protein, C-terminal domain DM194_07435 PF08676 MutL C terminal dimerisation domain DM194_07440 PF00128 Alpha amylase, catalytic domain DM194_07440 PF16657 Maltogenic Amylase, C-terminal domain DM194_07450 PF07690 Major Facilitator Superfamily DM194_07460 PF00849 RNA pseudouridylate synthase DM194_07460 PF01479 S4 domain DM194_07465 PF14437 MafB19-like deaminase DM194_07475 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DM194_07475 PF02843 Phosphoribosylglycinamide synthetase, C domain DM194_07475 PF02844 Phosphoribosylglycinamide synthetase, N domain DM194_07480 PF02601 Exonuclease VII, large subunit DM194_07480 PF13742 OB-fold nucleic acid binding domain DM194_07485 PF01979 Amidohydrolase family DM194_07490 PF13393 Histidyl-tRNA synthetase DM194_07490 PF03129 Anticodon binding domain DM194_07500 PF00106 short chain dehydrogenase DM194_07505 PF14693 Ribosomal protein TL5, C-terminal domain DM194_07505 PF01386 Ribosomal L25p family DM194_07510 PF01195 Peptidyl-tRNA hydrolase DM194_07515 PF01926 50S ribosome-binding GTPase DM194_07515 PF06071 Protein of unknown function (DUF933) DM194_07520 PF02690 Na+/Pi-cotransporter DM194_07525 PF00990 Diguanylate cyclase, GGDEF domain DM194_07525 PF00563 EAL domain DM194_07525 PF03707 Bacterial signalling protein N terminal repeat DM194_07525 PF13188 PAS domain DM194_07530 PF13344 Haloacid dehalogenase-like hydrolase DM194_07530 PF00293 NUDIX domain DM194_07535 PF03466 LysR substrate binding domain DM194_07535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_07570 PF02129 X-Pro dipeptidyl-peptidase (S15 family) DM194_07575 PF00132 Bacterial transferase hexapeptide (six repeats) DM194_07575 PF06426 Serine acetyltransferase, N-terminal DM194_07580 PF02082 Transcriptional regulator DM194_07585 PF00266 Aminotransferase class-V DM194_07590 PF07743 HSCB C-terminal oligomerisation domain DM194_07590 PF00226 DnaJ domain DM194_07595 PF00111 2Fe-2S iron-sulfur cluster binding domain DM194_07610 PF00990 Diguanylate cyclase, GGDEF domain DM194_07610 PF00072 Response regulator receiver domain DM194_07615 PF02954 Bacterial regulatory protein, Fis family DM194_07615 PF01590 GAF domain DM194_07615 PF00158 Sigma-54 interaction domain DM194_07620 PF01968 Hydantoinase/oxoprolinase DM194_07620 PF05378 Hydantoinase/oxoprolinase N-terminal region DM194_07630 PF05099 Tellurite resistance protein TerB DM194_07630 PF00226 DnaJ domain DM194_07645 PF00892 EamA-like transporter family DM194_07650 PF01510 N-acetylmuramoyl-L-alanine amidase DM194_07660 PF02381 MraZ protein, putative antitoxin-like DM194_07665 PF01795 MraW methylase family DM194_07675 PF00905 Penicillin binding protein transpeptidase domain DM194_07675 PF03717 Penicillin-binding Protein dimerisation domain DM194_07680 PF01225 Mur ligase family, catalytic domain DM194_07680 PF02875 Mur ligase family, glutamate ligase domain DM194_07680 PF08245 Mur ligase middle domain DM194_07685 PF08245 Mur ligase middle domain DM194_07685 PF02875 Mur ligase family, glutamate ligase domain DM194_07685 PF01225 Mur ligase family, catalytic domain DM194_07690 PF00953 Glycosyl transferase family 4 DM194_07690 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 DM194_07695 PF08245 Mur ligase middle domain DM194_07700 PF01098 Cell cycle protein DM194_07705 PF03033 Glycosyltransferase family 28 N-terminal domain DM194_07705 PF04101 Glycosyltransferase family 28 C-terminal domain DM194_07715 PF08245 Mur ligase middle domain DM194_07715 PF02875 Mur ligase family, glutamate ligase domain DM194_07715 PF01225 Mur ligase family, catalytic domain DM194_07720 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DM194_07720 PF01565 FAD binding domain DM194_07725 PF07478 D-ala D-ala ligase C-terminus DM194_07725 PF01820 D-ala D-ala ligase N-terminus DM194_07730 PF03799 Cell division protein FtsQ DM194_07730 PF08478 POTRA domain, FtsQ-type DM194_07735 PF02491 SHS2 domain inserted in FTSA DM194_07740 PF00091 Tubulin/FtsZ family, GTPase domain DM194_07740 PF12327 FtsZ family, C-terminal domain DM194_07745 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase DM194_07755 PF03120 NAD-dependent DNA ligase OB-fold domain DM194_07755 PF12826 Helix-hairpin-helix motif DM194_07755 PF00533 BRCA1 C Terminus (BRCT) domain DM194_07755 PF03119 NAD-dependent DNA ligase C4 zinc finger domain DM194_07755 PF01653 NAD-dependent DNA ligase adenylation domain DM194_07765 PF00478 IMP dehydrogenase / GMP reductase domain DM194_07765 PF00571 CBS domain DM194_07770 PF01728 FtsJ-like methyltransferase DM194_07780 PF03109 ABC1 family DM194_07785 PF02547 Queuosine biosynthesis protein DM194_07790 PF01702 Queuine tRNA-ribosyltransferase DM194_07795 PF14489 QueF-like protein DM194_07800 PF08331 Domain of unknown function (DUF1730) DM194_07815 PF01928 CYTH domain DM194_07835 PF01066 CDP-alcohol phosphatidyltransferase DM194_07840 PF02666 Phosphatidylserine decarboxylase DM194_07855 PF02608 ABC transporter substrate-binding protein PnrA-like DM194_07870 PF00005 ABC transporter DM194_07875 PF01571 Aminomethyltransferase folate-binding domain DM194_07890 PF13419 Haloacid dehalogenase-like hydrolase DM194_07895 PF01479 S4 domain DM194_07895 PF00849 RNA pseudouridylate synthase DM194_07900 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DM194_07905 PF00857 Isochorismatase family DM194_07910 PF01738 Dienelactone hydrolase family DM194_07915 PF00005 ABC transporter DM194_07920 PF12704 MacB-like periplasmic core domain DM194_07920 PF02687 FtsX-like permease family DM194_07925 PF03129 Anticodon binding domain DM194_07925 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DM194_07940 PF03352 Methyladenine glycosylase DM194_07940 PF13673 Acetyltransferase (GNAT) domain DM194_07940 PF13302 Acetyltransferase (GNAT) domain DM194_07940 PF00958 GMP synthase C terminal domain DM194_07940 PF00117 Glutamine amidotransferase class-I DM194_07955 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DM194_07955 PF17770 Ribonuclease J C-terminal domain DM194_07955 PF12706 Beta-lactamase superfamily domain DM194_07960 PF03309 Type III pantothenate kinase DM194_07965 PF03099 Biotin/lipoate A/B protein ligase family DM194_07965 PF02237 Biotin protein ligase C terminal domain DM194_07970 PF00361 Proton-conducting membrane transporter DM194_07975 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus DM194_07975 PF00361 Proton-conducting membrane transporter DM194_07980 PF00361 Proton-conducting membrane transporter DM194_07980 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DM194_07985 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DM194_07990 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DM194_07995 PF12838 4Fe-4S dicluster domain DM194_08000 PF00146 NADH dehydrogenase DM194_08005 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal DM194_08005 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DM194_08005 PF00384 Molybdopterin oxidoreductase DM194_08010 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DM194_08010 PF10531 SLBB domain DM194_08010 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DM194_08020 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DM194_08025 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DM194_08030 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DM194_08035 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DM194_08070 PF13193 AMP-binding enzyme C-terminal domain DM194_08070 PF16177 Acetyl-coenzyme A synthetase N-terminus DM194_08070 PF00501 AMP-binding enzyme DM194_08115 PF13847 Methyltransferase domain DM194_08115 PF10119 Predicted methyltransferase regulatory domain DM194_08120 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase DM194_08125 PF01895 PhoU domain DM194_08130 PF03350 Uncharacterized protein family, UPF0114 DM194_08140 PF04085 rod shape-determining protein MreC DM194_08150 PF03717 Penicillin-binding Protein dimerisation domain DM194_08150 PF00905 Penicillin binding protein transpeptidase domain DM194_08155 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DM194_08155 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DM194_08160 PF10369 Small subunit of acetolactate synthase DM194_08165 PF00205 Thiamine pyrophosphate enzyme, central domain DM194_08165 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DM194_08165 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DM194_08170 PF00155 Aminotransferase class I and II DM194_08205 PF02492 CobW/HypB/UreG, nucleotide-binding domain DM194_08210 PF01730 UreF DM194_08215 PF05194 UreE urease accessory protein, C-terminal domain DM194_08215 PF02814 UreE urease accessory protein, N-terminal domain DM194_08220 PF01177 Asp/Glu/Hydantoin racemase DM194_08225 PF00449 Urease alpha-subunit, N-terminal domain DM194_08225 PF01979 Amidohydrolase family DM194_08230 PF00699 Urease beta subunit DM194_08235 PF00547 Urease, gamma subunit DM194_08240 PF01774 UreD urease accessory protein DM194_08245 PF00072 Response regulator receiver domain DM194_08245 PF00196 Bacterial regulatory proteins, luxR family DM194_08250 PF00196 Bacterial regulatory proteins, luxR family DM194_08250 PF00072 Response regulator receiver domain DM194_08270 PF01965 DJ-1/PfpI family DM194_08285 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DM194_08295 PF00583 Acetyltransferase (GNAT) family DM194_08305 PF01370 NAD dependent epimerase/dehydratase family DM194_08310 PF00953 Glycosyl transferase family 4 DM194_08325 PF01370 NAD dependent epimerase/dehydratase family DM194_08330 PF02719 Polysaccharide biosynthesis protein DM194_08345 PF01264 Chorismate synthase DM194_08355 PF17876 Cold shock domain DM194_08355 PF00575 S1 RNA binding domain DM194_08355 PF08461 Ribonuclease R winged-helix domain DM194_08355 PF08206 Ribonuclease B OB domain DM194_08355 PF00773 RNB domain DM194_08360 PF13180 PDZ domain DM194_08360 PF03572 Peptidase family S41 DM194_08365 PF00471 Ribosomal protein L33 DM194_08370 PF03781 Sulfatase-modifying factor enzyme 1 DM194_08370 PF12867 DinB superfamily DM194_08385 PF03788 LrgA family DM194_08390 PF04172 LrgB-like family DM194_08395 PF00682 HMGL-like DM194_08395 PF08502 LeuA allosteric (dimerisation) domain DM194_08400 PF01370 NAD dependent epimerase/dehydratase family DM194_08405 PF01790 Prolipoprotein diacylglyceryl transferase DM194_08420 PF14572 Phosphoribosyl synthetase-associated domain DM194_08420 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DM194_08450 PF00072 Response regulator receiver domain DM194_08450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_08450 PF13426 PAS domain DM194_08465 PF13185 GAF domain DM194_08465 PF00158 Sigma-54 interaction domain DM194_08465 PF02954 Bacterial regulatory protein, Fis family DM194_08470 PF00211 Adenylate and Guanylate cyclase catalytic domain DM194_08475 PF04055 Radical SAM superfamily DM194_08475 PF02579 Dinitrogenase iron-molybdenum cofactor DM194_08480 PF12838 4Fe-4S dicluster domain DM194_08490 PF05484 LRV protein FeS4 cluster DM194_08490 PF01816 Leucine rich repeat variant DM194_08495 PF04319 NifZ domain DM194_08510 PF06988 NifT/FixU protein DM194_08520 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DM194_08535 PF04279 Intracellular septation protein A DM194_08540 PF02416 mttA/Hcf106 family DM194_08550 PF00072 Response regulator receiver domain DM194_08550 PF00486 Transcriptional regulatory protein, C terminal DM194_08555 PF00929 Exonuclease DM194_08565 PF16736 Single Cache-like DM194_08565 PF00989 PAS fold DM194_08565 PF00512 His Kinase A (phospho-acceptor) domain DM194_08565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_08570 PF02743 Cache domain DM194_08570 PF00512 His Kinase A (phospho-acceptor) domain DM194_08570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_08575 PF00989 PAS fold DM194_08575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_08575 PF00512 His Kinase A (phospho-acceptor) domain DM194_08580 PF01966 HD domain DM194_08580 PF00072 Response regulator receiver domain DM194_08585 PF00899 ThiF family DM194_08600 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding DM194_08625 PF02091 Glycyl-tRNA synthetase alpha subunit DM194_08630 PF05746 DALR anticodon binding domain DM194_08630 PF02092 Glycyl-tRNA synthetase beta subunit DM194_08635 PF01523 Putative modulator of DNA gyrase DM194_08645 PF02769 AIR synthase related protein, C-terminal domain DM194_08645 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DM194_08645 PF00586 AIR synthase related protein, N-terminal domain DM194_08665 PF00072 Response regulator receiver domain DM194_08665 PF00672 HAMP domain DM194_08665 PF00512 His Kinase A (phospho-acceptor) domain DM194_08665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_08665 PF01627 Hpt domain DM194_08680 PF01406 tRNA synthetases class I (C) catalytic domain DM194_08680 PF09190 DALR domain DM194_08685 PF00749 tRNA synthetases class I (E and Q), catalytic domain DM194_08705 PF00795 Carbon-nitrogen hydrolase DM194_08705 PF02540 NAD synthase DM194_08720 PF00144 Beta-lactamase DM194_08720 PF11954 Domain of unknown function (DUF3471) DM194_08730 PF00535 Glycosyl transferase family 2 DM194_08745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_08745 PF00672 HAMP domain DM194_08755 PF03737 Aldolase/RraA DM194_08770 PF00085 Thioredoxin DM194_08780 PF03966 Trm112p-like protein DM194_08790 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DM194_08800 PF00108 Thiolase, N-terminal domain DM194_08800 PF02803 Thiolase, C-terminal domain DM194_08805 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus DM194_08805 PF00561 alpha/beta hydrolase fold DM194_08810 PF07879 PHB/PHA accumulation regulator DNA-binding domain DM194_08810 PF05233 PHB accumulation regulatory domain DM194_08845 PF03411 Penicillin-insensitive murein endopeptidase DM194_08855 PF00005 ABC transporter DM194_08855 PF00664 ABC transporter transmembrane region DM194_08860 PF01197 Ribosomal protein L31 DM194_08870 PF00011 Hsp20/alpha crystallin family DM194_08890 PF00829 Ribosomal prokaryotic L21 protein DM194_08895 PF01016 Ribosomal L27 protein DM194_08900 PF01018 GTP1/OBG DM194_08900 PF01926 50S ribosome-binding GTPase DM194_08905 PF01472 PUA domain DM194_08905 PF00696 Amino acid kinase family DM194_08910 PF13419 Haloacid dehalogenase-like hydrolase DM194_08925 PF13180 PDZ domain DM194_08925 PF03572 Peptidase family S41 DM194_08930 PF01551 Peptidase family M23 DM194_08935 PF06415 BPG-independent PGAM N-terminus (iPGM_N) DM194_08935 PF01676 Metalloenzyme superfamily DM194_08940 PF02590 Predicted SPOUT methyltransferase DM194_08950 PF01467 Cytidylyltransferase-like DM194_08955 PF00171 Aldehyde dehydrogenase family DM194_08960 PF01925 Sulfite exporter TauE/SafE DM194_08965 PF00293 NUDIX domain DM194_08975 PF00072 Response regulator receiver domain DM194_08980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_08980 PF01584 CheW-like domain DM194_08980 PF02895 Signal transducing histidine kinase, homodimeric domain DM194_08980 PF01627 Hpt domain DM194_08985 PF01584 CheW-like domain DM194_08990 PF00672 HAMP domain DM194_08990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_08990 PF02203 Tar ligand binding domain homologue DM194_08995 PF01739 CheR methyltransferase, SAM binding domain DM194_08995 PF03705 CheR methyltransferase, all-alpha domain DM194_09000 PF03975 CheD chemotactic sensory transduction DM194_09005 PF00072 Response regulator receiver domain DM194_09005 PF01339 CheB methylesterase DM194_09010 PF02743 Cache domain DM194_09010 PF00672 HAMP domain DM194_09010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_09015 PF01740 STAS domain DM194_09025 PF00072 Response regulator receiver domain DM194_09025 PF00990 Diguanylate cyclase, GGDEF domain DM194_09030 PF00990 Diguanylate cyclase, GGDEF domain DM194_09030 PF00072 Response regulator receiver domain DM194_09035 PF01479 S4 domain DM194_09035 PF00163 Ribosomal protein S4/S9 N-terminal domain DM194_09040 PF01266 FAD dependent oxidoreductase DM194_09045 PF00011 Hsp20/alpha crystallin family DM194_09065 PF13426 PAS domain DM194_09065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_09065 PF08447 PAS fold DM194_09075 PF02646 RmuC family DM194_09135 PF00313 'Cold-shock' DNA-binding domain DM194_09140 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DM194_09145 PF13456 Reverse transcriptase-like DM194_09145 PF00300 Histidine phosphatase superfamily (branch 1) DM194_09150 PF01256 Carbohydrate kinase DM194_09155 PF00445 Ribonuclease T2 family DM194_09160 PF03588 Leucyl/phenylalanyl-tRNA protein transferase DM194_09170 PF03702 Anhydro-N-acetylmuramic acid kinase DM194_09180 PF00578 AhpC/TSA family DM194_09185 PF03710 Glutamate-ammonia ligase adenylyltransferase DM194_09185 PF08335 GlnD PII-uridylyltransferase DM194_09195 PF00579 tRNA synthetases class I (W and Y) DM194_09200 PF00210 Ferritin-like domain DM194_09205 PF00210 Ferritin-like domain DM194_09210 PF13614 AAA domain DM194_09215 PF03481 Putative GTP-binding controlling metal-binding DM194_09215 PF01300 Telomere recombination DM194_09220 PF01565 FAD binding domain DM194_09220 PF02913 FAD linked oxidases, C-terminal domain DM194_09225 PF00330 Aconitase family (aconitate hydratase) DM194_09230 PF02653 Branched-chain amino acid transport system / permease component DM194_09235 PF02774 Semialdehyde dehydrogenase, dimerisation domain DM194_09235 PF01118 Semialdehyde dehydrogenase, NAD binding domain DM194_09240 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DM194_09255 PF01416 tRNA pseudouridine synthase DM194_09260 PF02911 Formyl transferase, C-terminal domain DM194_09260 PF00551 Formyl transferase DM194_09265 PF01327 Polypeptide deformylase DM194_09270 PF02654 Cobalamin-5-phosphate synthase DM194_09285 PF00270 DEAD/DEAH box helicase DM194_09285 PF00271 Helicase conserved C-terminal domain DM194_09300 PF08502 LeuA allosteric (dimerisation) domain DM194_09300 PF00682 HMGL-like DM194_09305 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DM194_09305 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DM194_09315 PF03547 Membrane transport protein DM194_09320 PF00563 EAL domain DM194_09320 PF00990 Diguanylate cyclase, GGDEF domain DM194_09320 PF03707 Bacterial signalling protein N terminal repeat DM194_09325 PF00929 Exonuclease DM194_09325 PF04851 Type III restriction enzyme, res subunit DM194_09325 PF13307 Helicase C-terminal domain DM194_09330 PF00912 Transglycosylase DM194_09340 PF04545 Sigma-70, region 4 DM194_09340 PF04542 Sigma-70 region 2 DM194_09345 PF03454 MoeA C-terminal region (domain IV) DM194_09345 PF00994 Probable molybdopterin binding domain DM194_09345 PF03453 MoeA N-terminal region (domain I and II) DM194_09355 PF00072 Response regulator receiver domain DM194_09355 PF00990 Diguanylate cyclase, GGDEF domain DM194_09360 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DM194_09360 PF00672 HAMP domain DM194_09360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_09360 PF01627 Hpt domain DM194_09360 PF00512 His Kinase A (phospho-acceptor) domain DM194_09360 PF00072 Response regulator receiver domain DM194_09365 PF07995 Glucose / Sorbosone dehydrogenase DM194_09375 PF04397 LytTr DNA-binding domain DM194_09385 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD DM194_09385 PF00132 Bacterial transferase hexapeptide (six repeats) DM194_09395 PF00691 OmpA family DM194_09400 PF03480 Bacterial extracellular solute-binding protein, family 7 DM194_09415 PF00501 AMP-binding enzyme DM194_09415 PF16177 Acetyl-coenzyme A synthetase N-terminus DM194_09415 PF13193 AMP-binding enzyme C-terminal domain DM194_09430 PF03795 YCII-related domain DM194_09450 PF00694 Aconitase C-terminal domain DM194_09450 PF00330 Aconitase family (aconitate hydratase) DM194_09455 PF00512 His Kinase A (phospho-acceptor) domain DM194_09455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_09465 PF07722 Peptidase C26 DM194_09480 PF00691 OmpA family DM194_09480 PF13488 Glycine zipper DM194_09490 PF09335 SNARE associated Golgi protein DM194_09500 PF00571 CBS domain DM194_09510 PF00313 'Cold-shock' DNA-binding domain DM194_09530 PF00672 HAMP domain DM194_09530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_09530 PF00512 His Kinase A (phospho-acceptor) domain DM194_09530 PF01627 Hpt domain DM194_09530 PF00072 Response regulator receiver domain DM194_09530 PF17149 Periplasmic sensor domain found in signal transduction proteins DM194_09535 PF13417 Glutathione S-transferase, N-terminal domain DM194_09540 PF00005 ABC transporter DM194_09545 PF00005 ABC transporter DM194_09545 PF12399 Branched-chain amino acid ATP-binding cassette transporter DM194_09550 PF11862 Domain of unknown function (DUF3382) DM194_09550 PF02653 Branched-chain amino acid transport system / permease component DM194_09555 PF02653 Branched-chain amino acid transport system / permease component DM194_09565 PF07848 PaaX-like protein DM194_09565 PF08223 PaaX-like protein C-terminal domain DM194_09580 PF00970 Oxidoreductase FAD-binding domain DM194_09580 PF00111 2Fe-2S iron-sulfur cluster binding domain DM194_09580 PF00175 Oxidoreductase NAD-binding domain DM194_09585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_09585 PF00672 HAMP domain DM194_09595 PF04209 homogentisate 1,2-dioxygenase DM194_09605 PF00132 Bacterial transferase hexapeptide (six repeats) DM194_09610 PF01494 FAD binding domain DM194_09625 PF00707 Translation initiation factor IF-3, C-terminal domain DM194_09625 PF05198 Translation initiation factor IF-3, N-terminal domain DM194_09630 PF02824 TGS domain DM194_09630 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DM194_09630 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DM194_09630 PF03129 Anticodon binding domain DM194_09645 PF00563 EAL domain DM194_09645 PF00990 Diguanylate cyclase, GGDEF domain DM194_09645 PF03707 Bacterial signalling protein N terminal repeat DM194_09650 PF01180 Dihydroorotate dehydrogenase DM194_09675 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) DM194_09675 PF13229 Right handed beta helix region DM194_09675 PF12708 Pectate lyase superfamily protein DM194_09710 PF01475 Ferric uptake regulator family DM194_09715 PF00080 Copper/zinc superoxide dismutase (SODC) DM194_09720 PF00270 DEAD/DEAH box helicase DM194_09720 PF00271 Helicase conserved C-terminal domain DM194_09725 PF00043 Glutathione S-transferase, C-terminal domain DM194_09725 PF02798 Glutathione S-transferase, N-terminal domain DM194_09730 PF12729 Four helix bundle sensory module for signal transduction DM194_09730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_09730 PF00672 HAMP domain DM194_09745 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DM194_09750 PF02874 ATP synthase alpha/beta family, beta-barrel domain DM194_09750 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DM194_09755 PF00231 ATP synthase DM194_09760 PF02874 ATP synthase alpha/beta family, beta-barrel domain DM194_09760 PF00306 ATP synthase alpha/beta chain, C terminal domain DM194_09760 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DM194_09765 PF00213 ATP synthase delta (OSCP) subunit DM194_09780 PF18074 Primosomal protein N C-terminal domain DM194_09780 PF17764 3′ DNA-binding domain (3′BD) DM194_09780 PF18319 PriA DNA helicase Cys-rich region (CRR) domain DM194_09780 PF00270 DEAD/DEAH box helicase DM194_09785 PF00923 Transaldolase/Fructose-6-phosphate aldolase DM194_09795 PF00589 Phage integrase family DM194_09795 PF02899 Phage integrase, N-terminal SAM-like domain DM194_09805 PF00672 HAMP domain DM194_09805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_09810 PF07992 Pyridine nucleotide-disulphide oxidoreductase DM194_09810 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DM194_09820 PF01467 Cytidylyltransferase-like DM194_09820 PF00294 pfkB family carbohydrate kinase DM194_09825 PF00512 His Kinase A (phospho-acceptor) domain DM194_09825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_09835 PF13649 Methyltransferase domain DM194_09850 PF00162 Phosphoglycerate kinase DM194_09860 PF12170 DNA polymerase III tau subunit V interacting with alpha DM194_09860 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding DM194_09860 PF12169 DNA polymerase III subunits gamma and tau domain III DM194_09865 PF02575 YbaB/EbfC DNA-binding family DM194_09870 PF02132 RecR protein DM194_09870 PF13662 Toprim domain DM194_09880 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DM194_09880 PF07733 Bacterial DNA polymerase III alpha NTPase domain DM194_09880 PF02811 PHP domain DM194_09880 PF14579 Helix-hairpin-helix motif DM194_09880 PF01336 OB-fold nucleic acid binding domain DM194_09905 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DM194_09905 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DM194_09910 PF00814 Glycoprotease family DM194_09915 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain DM194_09915 PF03900 Porphobilinogen deaminase, C-terminal domain DM194_09945 PF00535 Glycosyl transferase family 2 DM194_09945 PF01501 Glycosyl transferase family 8 DM194_09955 PF04024 PspC domain DM194_09960 PF06667 Phage shock protein B DM194_09965 PF04012 PspA/IM30 family DM194_09970 PF00158 Sigma-54 interaction domain DM194_09970 PF02954 Bacterial regulatory protein, Fis family DM194_09975 PF01274 Malate synthase DM194_09980 PF03232 Ubiquinone biosynthesis protein COQ7 DM194_09985 PF02600 Disulfide bond formation protein DsbB DM194_09995 PF00581 Rhodanese-like domain DM194_10015 PF02464 Competence-damaged protein DM194_10015 PF00994 Probable molybdopterin binding domain DM194_10020 PF03749 Sugar fermentation stimulation protein RE domain DM194_10020 PF17746 SfsA N-terminal OB domain DM194_10025 PF00557 Metallopeptidase family M24 DM194_10030 PF00106 short chain dehydrogenase DM194_10045 PF02705 K+ potassium transporter DM194_10050 PF11849 Domain of unknown function (DUF3369) DM194_10065 PF01593 Flavin containing amine oxidoreductase DM194_10070 PF00749 tRNA synthetases class I (E and Q), catalytic domain DM194_10085 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DM194_10115 PF13417 Glutathione S-transferase, N-terminal domain DM194_10115 PF00043 Glutathione S-transferase, C-terminal domain DM194_10125 PF00183 Hsp90 protein DM194_10130 PF00512 His Kinase A (phospho-acceptor) domain DM194_10130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_10130 PF00989 PAS fold DM194_10135 PF01475 Ferric uptake regulator family DM194_10155 PF04542 Sigma-70 region 2 DM194_10155 PF08281 Sigma-70, region 4 DM194_10155 PF12680 SnoaL-like domain DM194_10160 PF02627 Carboxymuconolactone decarboxylase family DM194_10175 PF00899 ThiF family DM194_10185 PF00291 Pyridoxal-phosphate dependent enzyme DM194_10190 PF02082 Transcriptional regulator DM194_10200 PF03551 Transcriptional regulator PadR-like family DM194_10210 PF07992 Pyridine nucleotide-disulphide oxidoreductase DM194_10215 PF00528 Binding-protein-dependent transport system inner membrane component DM194_10225 PF00005 ABC transporter DM194_10225 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DM194_10230 PF00005 ABC transporter DM194_10230 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DM194_10245 PF03466 LysR substrate binding domain DM194_10245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_10250 PF00107 Zinc-binding dehydrogenase DM194_10250 PF08240 Alcohol dehydrogenase GroES-like domain DM194_10265 PF00196 Bacterial regulatory proteins, luxR family DM194_10265 PF00072 Response regulator receiver domain DM194_10280 PF00118 TCP-1/cpn60 chaperonin family DM194_10285 PF00166 Chaperonin 10 Kd subunit DM194_10290 PF06233 Usg-like family DM194_10300 PF00959 Phage lysozyme DM194_10305 PF02628 Cytochrome oxidase assembly protein DM194_10310 PF00027 Cyclic nucleotide-binding domain DM194_10310 PF13545 Crp-like helix-turn-helix domain DM194_10315 PF03597 Cytochrome oxidase maturation protein cbb3-type DM194_10320 PF00403 Heavy-metal-associated domain DM194_10330 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP DM194_10330 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DM194_10330 PF00034 Cytochrome c DM194_10345 PF00115 Cytochrome C and Quinol oxidase polypeptide I DM194_10355 PF10672 S-adenosylmethionine-dependent methyltransferase DM194_10355 PF17785 PUA-like domain DM194_10360 PF05958 tRNA (Uracil-5-)-methyltransferase DM194_10375 PF00528 Binding-protein-dependent transport system inner membrane component DM194_10380 PF00528 Binding-protein-dependent transport system inner membrane component DM194_10395 PF00155 Aminotransferase class I and II DM194_10405 PF00072 Response regulator receiver domain DM194_10405 PF00990 Diguanylate cyclase, GGDEF domain DM194_10410 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DM194_10415 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DM194_10425 PF00664 ABC transporter transmembrane region DM194_10425 PF00005 ABC transporter DM194_10430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_10430 PF00672 HAMP domain DM194_10465 PF04055 Radical SAM superfamily DM194_10480 PF03741 Integral membrane protein TerC family DM194_10495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_10495 PF03466 LysR substrate binding domain DM194_10500 PF00037 4Fe-4S binding domain DM194_10500 PF11953 Domain of unknown function (DUF3470) DM194_10515 PF04542 Sigma-70 region 2 DM194_10515 PF04545 Sigma-70, region 4 DM194_10515 PF00140 Sigma-70 factor, region 1.2 DM194_10520 PF02142 MGS-like domain DM194_10520 PF01808 AICARFT/IMPCHase bienzyme DM194_10530 PF01029 NusB family DM194_10530 PF01189 16S rRNA methyltransferase RsmB/F DM194_10540 PF00378 Enoyl-CoA hydratase/isomerase DM194_10545 PF07690 Major Facilitator Superfamily DM194_10550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_10550 PF03466 LysR substrate binding domain DM194_10565 PF03006 Haemolysin-III related DM194_10580 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DM194_10580 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DM194_10590 PF00764 Arginosuccinate synthase DM194_10595 PF03358 NADPH-dependent FMN reductase DM194_10600 PF00248 Aldo/keto reductase family DM194_10610 PF00106 short chain dehydrogenase DM194_10625 PF02423 Ornithine cyclodeaminase/mu-crystallin family DM194_10635 PF00216 Bacterial DNA-binding protein DM194_10650 PF00595 PDZ domain DM194_10650 PF13180 PDZ domain DM194_10680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_10680 PF07568 Histidine kinase DM194_10680 PF12282 Signal transduction histidine kinase DM194_10685 PF00210 Ferritin-like domain DM194_10690 PF00672 HAMP domain DM194_10690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_10690 PF17200 Single Cache domain 2 DM194_10695 PF00672 HAMP domain DM194_10695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_10695 PF17200 Single Cache domain 2 DM194_10700 PF03764 Elongation factor G, domain IV DM194_10700 PF00679 Elongation factor G C-terminus DM194_10700 PF14492 Elongation Factor G, domain II DM194_10700 PF00009 Elongation factor Tu GTP binding domain DM194_10720 PF00034 Cytochrome c DM194_10720 PF03150 Di-haem cytochrome c peroxidase DM194_10740 PF03707 Bacterial signalling protein N terminal repeat DM194_10740 PF00990 Diguanylate cyclase, GGDEF domain DM194_10740 PF00563 EAL domain DM194_10780 PF01063 Amino-transferase class IV DM194_10790 PF13237 4Fe-4S dicluster domain DM194_10790 PF13085 2Fe-2S iron-sulfur cluster binding domain DM194_10795 PF02910 Fumarate reductase flavoprotein C-term DM194_10795 PF00890 FAD binding domain DM194_10805 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DM194_10820 PF04055 Radical SAM superfamily DM194_10830 PF11849 Domain of unknown function (DUF3369) DM194_10835 PF06906 Protein of unknown function (DUF1272) DM194_10840 PF02798 Glutathione S-transferase, N-terminal domain DM194_10840 PF00043 Glutathione S-transferase, C-terminal domain DM194_10845 PF07687 Peptidase dimerisation domain DM194_10845 PF01546 Peptidase family M20/M25/M40 DM194_10855 PF08447 PAS fold DM194_10855 PF00563 EAL domain DM194_10855 PF08448 PAS fold DM194_10855 PF00990 Diguanylate cyclase, GGDEF domain DM194_10885 PF00156 Phosphoribosyl transferase domain DM194_10890 PF00462 Glutaredoxin DM194_10895 PF00795 Carbon-nitrogen hydrolase DM194_10910 PF00474 Sodium:solute symporter family DM194_10915 PF04341 Protein of unknown function, DUF485 DM194_10945 PF00202 Aminotransferase class-III DM194_10955 PF10431 C-terminal, D2-small domain, of ClpB protein DM194_10955 PF07724 AAA domain (Cdc48 subfamily) DM194_10955 PF02861 Clp amino terminal domain, pathogenicity island component DM194_10955 PF00004 ATPase family associated with various cellular activities (AAA) DM194_10955 PF17871 AAA lid domain DM194_10960 PF00293 NUDIX domain DM194_10960 PF13344 Haloacid dehalogenase-like hydrolase DM194_10975 PF13847 Methyltransferase domain DM194_10975 PF17827 PrmC N-terminal domain DM194_10980 PF00472 RF-1 domain DM194_10980 PF03462 PCRF domain DM194_10985 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain DM194_10985 PF01488 Shikimate / quinate 5-dehydrogenase DM194_10985 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain DM194_10990 PF04551 GcpE protein DM194_11000 PF01590 GAF domain DM194_11000 PF05524 PEP-utilising enzyme, N-terminal DM194_11000 PF02896 PEP-utilising enzyme, TIM barrel domain DM194_11000 PF00391 PEP-utilising enzyme, mobile domain DM194_11005 PF03060 Nitronate monooxygenase DM194_11010 PF13840 ACT domain DM194_11010 PF00696 Amino acid kinase family DM194_11010 PF01842 ACT domain DM194_11025 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DM194_11030 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus DM194_11030 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DM194_11035 PF00309 Sigma-54 factor, Activator interacting domain (AID) DM194_11035 PF04963 Sigma-54 factor, core binding domain DM194_11035 PF04552 Sigma-54, DNA binding domain DM194_11040 PF00005 ABC transporter DM194_11055 PF01380 SIS domain DM194_11055 PF00571 CBS domain DM194_11060 PF01612 3'-5' exonuclease DM194_11060 PF00570 HRDC domain DM194_11070 PF04321 RmlD substrate binding domain DM194_11080 PF07690 Major Facilitator Superfamily DM194_11085 PF02673 Bacitracin resistance protein BacA DM194_11090 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DM194_11090 PF07992 Pyridine nucleotide-disulphide oxidoreductase DM194_11095 PF01493 GXGXG motif DM194_11095 PF01645 Conserved region in glutamate synthase DM194_11095 PF04898 Glutamate synthase central domain DM194_11095 PF00310 Glutamine amidotransferases class-II DM194_11100 PF00583 Acetyltransferase (GNAT) family DM194_11110 PF01411 tRNA synthetases class II (A) DM194_11110 PF02272 DHHA1 domain DM194_11110 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DM194_11115 PF02789 Cytosol aminopeptidase family, N-terminal domain DM194_11115 PF00883 Cytosol aminopeptidase family, catalytic domain DM194_11120 PF01706 FliG C-terminal domain DM194_11120 PF14842 FliG N-terminal domain DM194_11120 PF14841 FliG middle domain DM194_11135 PF00512 His Kinase A (phospho-acceptor) domain DM194_11135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_11135 PF00672 HAMP domain DM194_11140 PF01451 Low molecular weight phosphotyrosine protein phosphatase DM194_11145 PF02146 Sir2 family DM194_11150 PF03167 Uracil DNA glycosylase superfamily DM194_11160 PF01329 Pterin 4 alpha carbinolamine dehydratase DM194_11175 PF01435 Peptidase family M48 DM194_11185 PF06213 Cobalamin biosynthesis protein CobT DM194_11185 PF11775 Cobalamin biosynthesis protein CobT VWA domain DM194_11190 PF07728 AAA domain (dynein-related subfamily) DM194_11190 PF08406 CbbQ/NirQ/NorQ C-terminal DM194_11190 PF12556 Cobaltochelatase CobS subunit N terminal DM194_11195 PF00226 DnaJ domain DM194_11200 PF01722 BolA-like protein DM194_11215 PF00571 CBS domain DM194_11225 PF01761 3-dehydroquinate synthase DM194_11230 PF01202 Shikimate kinase DM194_11240 PF00589 Phage integrase family DM194_11240 PF02899 Phage integrase, N-terminal SAM-like domain DM194_11250 PF00512 His Kinase A (phospho-acceptor) domain DM194_11250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_11255 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DM194_11255 PF00672 HAMP domain DM194_11255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_11255 PF00512 His Kinase A (phospho-acceptor) domain DM194_11255 PF01627 Hpt domain DM194_11255 PF00072 Response regulator receiver domain DM194_11260 PF00692 dUTPase DM194_11265 PF04127 DNA / pantothenate metabolism flavoprotein DM194_11265 PF02441 Flavoprotein DM194_11270 PF00158 Sigma-54 interaction domain DM194_11270 PF02954 Bacterial regulatory protein, Fis family DM194_11270 PF00072 Response regulator receiver domain DM194_11275 PF00313 'Cold-shock' DNA-binding domain DM194_11280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_11280 PF00072 Response regulator receiver domain DM194_11285 PF00291 Pyridoxal-phosphate dependent enzyme DM194_11290 PF00290 Tryptophan synthase alpha chain DM194_11295 PF17848 Acetyl-coA carboxylase zinc finger domain DM194_11295 PF01039 Carboxyl transferase domain DM194_11300 PF08245 Mur ligase middle domain DM194_11300 PF02875 Mur ligase family, glutamate ligase domain DM194_11315 PF02325 YGGT family DM194_11320 PF02594 Uncharacterised ACR, YggU family COG1872 DM194_11325 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DM194_11325 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DM194_11330 PF01544 CorA-like Mg2+ transporter protein DM194_11335 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain DM194_11335 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain DM194_11340 PF00583 Acetyltransferase (GNAT) family DM194_11340 PF13380 CoA binding domain DM194_11340 PF13607 Succinyl-CoA ligase like flavodoxin domain DM194_11345 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DM194_11345 PF00056 lactate/malate dehydrogenase, NAD binding domain DM194_11350 PF00719 Inorganic pyrophosphatase DM194_11355 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DM194_11360 PF02896 PEP-utilising enzyme, TIM barrel domain DM194_11360 PF05524 PEP-utilising enzyme, N-terminal DM194_11360 PF00391 PEP-utilising enzyme, mobile domain DM194_11365 PF00381 PTS HPr component phosphorylation site DM194_11370 PF03830 PTS system sorbose subfamily IIB component DM194_11370 PF03610 PTS system fructose IIA component DM194_11375 PF03668 P-loop ATPase protein family DM194_11390 PF00672 HAMP domain DM194_11390 PF13755 Sensor N-terminal transmembrane domain DM194_11390 PF13756 Stimulus-sensing domain DM194_11390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_11390 PF00512 His Kinase A (phospho-acceptor) domain DM194_11395 PF00072 Response regulator receiver domain DM194_11395 PF00486 Transcriptional regulatory protein, C terminal DM194_11405 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain DM194_11405 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain DM194_11445 PF00580 UvrD/REP helicase N-terminal domain DM194_11445 PF13361 UvrD-like helicase C-terminal domain DM194_11470 PF00589 Phage integrase family DM194_11490 PF05443 ROS/MUCR transcriptional regulator protein DM194_11505 PF00814 Glycoprotease family DM194_11510 PF01427 D-ala-D-ala dipeptidase DM194_11535 PF00012 Hsp70 protein DM194_11540 PF00684 DnaJ central domain DM194_11540 PF00226 DnaJ domain DM194_11540 PF01556 DnaJ C terminal domain DM194_11545 PF00990 Diguanylate cyclase, GGDEF domain DM194_11545 PF17151 Periplasmic sensor domain DM194_11550 PF02834 LigT like Phosphoesterase DM194_11555 PF00248 Aldo/keto reductase family DM194_11565 PF13472 GDSL-like Lipase/Acylhydrolase family DM194_11570 PF00005 ABC transporter DM194_11575 PF02687 FtsX-like permease family DM194_11575 PF12704 MacB-like periplasmic core domain DM194_11575 PF00005 ABC transporter DM194_11580 PF01027 Inhibitor of apoptosis-promoting Bax1 DM194_11590 PF00072 Response regulator receiver domain DM194_11590 PF00486 Transcriptional regulatory protein, C terminal DM194_11595 PF00005 ABC transporter DM194_11600 PF00528 Binding-protein-dependent transport system inner membrane component DM194_11605 PF00528 Binding-protein-dependent transport system inner membrane component DM194_11610 PF12849 PBP superfamily domain DM194_11620 PF01381 Helix-turn-helix DM194_11630 PF01515 Phosphate acetyl/butaryl transferase DM194_11630 PF03949 Malic enzyme, NAD binding domain DM194_11630 PF00390 Malic enzyme, N-terminal domain DM194_11635 PF01138 3' exoribonuclease family, domain 1 DM194_11635 PF03725 3' exoribonuclease family, domain 2 DM194_11640 PF01725 Ham1 family DM194_11645 PF04055 Radical SAM superfamily DM194_11645 PF06969 HemN C-terminal domain DM194_11650 PF00186 Dihydrofolate reductase DM194_11655 PF17762 HTH domain found in ParB protein DM194_11655 PF02195 ParB-like nuclease domain DM194_11660 PF13614 AAA domain DM194_11665 PF02527 rRNA small subunit methyltransferase G DM194_11670 PF01134 Glucose inhibited division protein A DM194_11670 PF13932 GidA associated domain DM194_11675 PF10396 GTP-binding protein TrmE N-terminus DM194_11675 PF01926 50S ribosome-binding GTPase DM194_11675 PF12631 MnmE helical domain DM194_11690 PF03190 Protein of unknown function, DUF255 DM194_11695 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DM194_11695 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DM194_11700 PF00107 Zinc-binding dehydrogenase DM194_11700 PF08240 Alcohol dehydrogenase GroES-like domain DM194_11705 PF00929 Exonuclease DM194_11710 PF01121 Dephospho-CoA kinase DM194_11715 PF01488 Shikimate / quinate 5-dehydrogenase DM194_11715 PF08501 Shikimate dehydrogenase substrate binding domain DM194_11715 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DM194_11720 PF02545 Maf-like protein DM194_11725 PF03618 Kinase/pyrophosphorylase DM194_11730 PF01208 Uroporphyrinogen decarboxylase (URO-D) DM194_11735 PF00762 Ferrochelatase DM194_11745 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DM194_11745 PF07498 Rho termination factor, N-terminal domain DM194_11745 PF07497 Rho termination factor, RNA-binding domain DM194_11750 PF02556 Preprotein translocase subunit SecB DM194_11755 PF04186 FxsA cytoplasmic membrane protein DM194_11760 PF04280 Tim44-like domain DM194_11765 PF06725 3D domain DM194_11765 PF03562 MltA specific insert domain DM194_11770 PF07724 AAA domain (Cdc48 subfamily) DM194_11770 PF00004 ATPase family associated with various cellular activities (AAA) DM194_11770 PF10431 C-terminal, D2-small domain, of ClpB protein DM194_11775 PF00227 Proteasome subunit DM194_11785 PF00475 Imidazoleglycerol-phosphate dehydratase DM194_11790 PF00117 Glutamine amidotransferase class-I DM194_11795 PF00583 Acetyltransferase (GNAT) family DM194_11800 PF00977 Histidine biosynthesis protein DM194_11805 PF00977 Histidine biosynthesis protein DM194_11810 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase DM194_11815 PF01230 HIT domain DM194_11825 PF01713 Smr domain DM194_11835 PF03918 Cytochrome C biogenesis protein DM194_11840 PF08534 Redoxin DM194_11845 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal DM194_11845 PF01578 Cytochrome C assembly protein DM194_11850 PF03100 CcmE DM194_11860 PF01578 Cytochrome C assembly protein DM194_11880 PF00013 KH domain DM194_11880 PF01138 3' exoribonuclease family, domain 1 DM194_11880 PF03725 3' exoribonuclease family, domain 2 DM194_11880 PF00575 S1 RNA binding domain DM194_11880 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DM194_11885 PF00312 Ribosomal protein S15 DM194_11890 PF01509 TruB family pseudouridylate synthase (N terminal domain) DM194_11890 PF16198 tRNA pseudouridylate synthase B C-terminal domain DM194_11895 PF02033 Ribosome-binding factor A DM194_11900 PF04760 Translation initiation factor IF-2, N-terminal region DM194_11900 PF03144 Elongation factor Tu domain 2 DM194_11900 PF11987 Translation-initiation factor 2 DM194_11900 PF00009 Elongation factor Tu GTP binding domain DM194_11900 PF08364 Bacterial translation initiation factor IF-2 associated region DM194_11900 PF11987 Translation-initiation factor 2 DM194_11900 PF00009 Elongation factor Tu GTP binding domain DM194_11900 PF03144 Elongation factor Tu domain 2 DM194_11900 PF08364 Bacterial translation initiation factor IF-2 associated region DM194_11900 PF04760 Translation initiation factor IF-2, N-terminal region DM194_11910 PF00575 S1 RNA binding domain DM194_11910 PF08529 NusA N-terminal domain DM194_11910 PF13184 NusA-like KH domain DM194_11915 PF02576 RimP N-terminal domain DM194_11915 PF17384 RimP C-terminal SH3 domain DM194_11920 PF02390 Putative methyltransferase DM194_11925 PF00438 S-adenosylmethionine synthetase, N-terminal domain DM194_11925 PF02772 S-adenosylmethionine synthetase, central domain DM194_11925 PF02773 S-adenosylmethionine synthetase, C-terminal domain DM194_11930 PF01381 Helix-turn-helix DM194_11935 PF00795 Carbon-nitrogen hydrolase DM194_11940 PF03471 Transporter associated domain DM194_11940 PF00571 CBS domain DM194_11945 PF02130 Uncharacterized protein family UPF0054 DM194_11950 PF02562 PhoH-like protein DM194_11955 PF01938 TRAM domain DM194_11955 PF00919 Uncharacterized protein family UPF0004 DM194_11955 PF04055 Radical SAM superfamily DM194_11965 PF04379 ApaG domain DM194_11970 PF01227 GTP cyclohydrolase I DM194_11975 PF04073 Aminoacyl-tRNA editing domain DM194_11985 PF00174 Oxidoreductase molybdopterin binding domain DM194_11990 PF00924 Mechanosensitive ion channel DM194_12005 PF10576 Iron-sulfur binding domain of endonuclease III DM194_12005 PF00633 Helix-hairpin-helix motif DM194_12005 PF00730 HhH-GPD superfamily base excision DNA repair protein DM194_12020 PF00294 pfkB family carbohydrate kinase DM194_12035 PF01925 Sulfite exporter TauE/SafE DM194_12050 PF01106 NifU-like domain DM194_12060 PF00072 Response regulator receiver domain DM194_12065 PF01025 GrpE DM194_12070 PF01628 HrcA protein C terminal domain DM194_12075 PF02633 Creatinine amidohydrolase DM194_12080 PF13335 Magnesium chelatase, subunit ChlI C-terminal DM194_12080 PF01078 Magnesium chelatase, subunit ChlI DM194_12095 PF01470 Pyroglutamyl peptidase DM194_12100 PF00579 tRNA synthetases class I (W and Y) DM194_12105 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain DM194_12105 PF02951 Prokaryotic glutathione synthetase, N-terminal domain DM194_12110 PF13369 Transglutaminase-like superfamily DM194_12115 PF02021 Uncharacterised protein family UPF0102 DM194_12120 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DM194_12130 PF00528 Binding-protein-dependent transport system inner membrane component DM194_12135 PF00528 Binding-protein-dependent transport system inner membrane component DM194_12140 PF00497 Bacterial extracellular solute-binding proteins, family 3 DM194_12145 PF00005 ABC transporter DM194_12150 PF02080 TrkA-C domain DM194_12150 PF06826 Predicted Permease Membrane Region DM194_12155 PF00005 ABC transporter DM194_12160 PF03379 CcmB protein DM194_12165 PF00255 Glutathione peroxidase DM194_12175 PF01618 MotA/TolQ/ExbB proton channel family DM194_12180 PF01476 LysM domain DM194_12180 PF01551 Peptidase family M23 DM194_12180 PF08525 Opacity-associated protein A N-terminal motif DM194_12220 PF05717 IS66 Orf2 like protein DM194_12225 PF13007 Transposase C of IS166 homeodomain DM194_12225 PF03050 Transposase IS66 family DM194_12225 PF13817 IS66 C-terminal element DM194_12225 PF13005 zinc-finger binding domain of transposase IS66 DM194_12240 PF00589 Phage integrase family DM194_12240 PF02899 Phage integrase, N-terminal SAM-like domain DM194_12250 PF00239 Resolvase, N terminal domain DM194_12285 PF09704 CRISPR-associated protein (Cas_Cas5) DM194_12305 PF01867 CRISPR associated protein Cas1 DM194_12310 PF09827 CRISPR associated protein Cas2 DM194_12320 PF00654 Voltage gated chloride channel DM194_12330 PF07992 Pyridine nucleotide-disulphide oxidoreductase DM194_12335 PF00204 DNA gyrase B DM194_12335 PF00986 DNA gyrase B subunit, carboxyl terminus DM194_12335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_12335 PF01751 Toprim domain DM194_12340 PF02463 RecF/RecN/SMC N terminal domain DM194_12345 PF02768 DNA polymerase III beta subunit, C-terminal domain DM194_12345 PF02767 DNA polymerase III beta subunit, central domain DM194_12345 PF00712 DNA polymerase III beta subunit, N-terminal domain DM194_12365 PF00085 Thioredoxin DM194_12370 PF00580 UvrD/REP helicase N-terminal domain DM194_12370 PF12705 PD-(D/E)XK nuclease superfamily DM194_12370 PF13361 UvrD-like helicase C-terminal domain DM194_12375 PF12705 PD-(D/E)XK nuclease superfamily DM194_12380 PF12804 MobA-like NTP transferase domain DM194_12390 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DM194_12400 PF07992 Pyridine nucleotide-disulphide oxidoreductase DM194_12405 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DM194_12410 PF00528 Binding-protein-dependent transport system inner membrane component DM194_12415 PF12911 N-terminal TM domain of oligopeptide transport permease C DM194_12415 PF00528 Binding-protein-dependent transport system inner membrane component DM194_12425 PF00156 Phosphoribosyl transferase domain DM194_12440 PF00561 alpha/beta hydrolase fold DM194_12445 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DM194_12445 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DM194_12455 PF00378 Enoyl-CoA hydratase/isomerase DM194_12460 PF01649 Ribosomal protein S20 DM194_12465 PF11638 DnaA N-terminal domain DM194_12465 PF00308 Bacterial dnaA protein DM194_12465 PF08299 Bacterial dnaA protein helix-turn-helix DM194_12470 PF00672 HAMP domain DM194_12470 PF00512 His Kinase A (phospho-acceptor) domain DM194_12470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_12475 PF00072 Response regulator receiver domain DM194_12475 PF00486 Transcriptional regulatory protein, C terminal DM194_12490 PF01479 S4 domain DM194_12500 PF08402 TOBE domain DM194_12500 PF00005 ABC transporter DM194_12505 PF13416 Bacterial extracellular solute-binding protein DM194_12510 PF00912 Transglycosylase DM194_12510 PF00905 Penicillin binding protein transpeptidase domain DM194_12545 PF04055 Radical SAM superfamily DM194_12550 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DM194_12550 PF05221 S-adenosyl-L-homocysteine hydrolase DM194_12585 PF13439 Glycosyltransferase Family 4 DM194_12585 PF00534 Glycosyl transferases group 1 DM194_12600 PF12802 MarR family DM194_12605 PF01557 Fumarylacetoacetate (FAA) hydrolase family DM194_12615 PF00300 Histidine phosphatase superfamily (branch 1) DM194_12625 PF12706 Beta-lactamase superfamily domain DM194_12635 PF00072 Response regulator receiver domain DM194_12635 PF00486 Transcriptional regulatory protein, C terminal DM194_12645 PF00925 GTP cyclohydrolase II DM194_12660 PF01168 Alanine racemase, N-terminal domain DM194_12685 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain DM194_12685 PF00591 Glycosyl transferase family, a/b domain DM194_12685 PF02885 Glycosyl transferase family, helical bundle domain DM194_12690 PF01791 DeoC/LacD family aldolase DM194_12695 PF01048 Phosphorylase superfamily DM194_12700 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DM194_12720 PF00892 EamA-like transporter family DM194_12730 PF02653 Branched-chain amino acid transport system / permease component DM194_12735 PF00005 ABC transporter DM194_12735 PF12399 Branched-chain amino acid ATP-binding cassette transporter DM194_12740 PF00005 ABC transporter DM194_12750 PF00654 Voltage gated chloride channel DM194_12775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_12775 PF03466 LysR substrate binding domain DM194_12820 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DM194_12820 PF00529 HlyD membrane-fusion protein of T1SS DM194_12825 PF00873 AcrB/AcrD/AcrF family DM194_12830 PF04545 Sigma-70, region 4 DM194_12830 PF04542 Sigma-70 region 2 DM194_12830 PF00140 Sigma-70 factor, region 1.2 DM194_12850 PF00574 Clp protease DM194_12855 PF00535 Glycosyl transferase family 2 DM194_12870 PF00873 AcrB/AcrD/AcrF family DM194_12875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_12875 PF08448 PAS fold DM194_12875 PF00072 Response regulator receiver domain DM194_12875 PF13188 PAS domain DM194_12875 PF00512 His Kinase A (phospho-acceptor) domain DM194_12885 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DM194_12900 PF00034 Cytochrome c DM194_12905 PF17432 Domain of unknown function (DUF3458_C) ARM repeats DM194_12905 PF01433 Peptidase family M1 domain DM194_12905 PF11940 Domain of unknown function (DUF3458) Ig-like fold DM194_12945 PF05717 IS66 Orf2 like protein DM194_12950 PF13005 zinc-finger binding domain of transposase IS66 DM194_12950 PF13007 Transposase C of IS166 homeodomain DM194_12950 PF13817 IS66 C-terminal element DM194_12950 PF03050 Transposase IS66 family DM194_12970 PF11202 Phosphoribosyl transferase (PRTase) DM194_12970 PF15608 PELOTA RNA binding domain DM194_13015 PF00092 von Willebrand factor type A domain DM194_13025 PF00092 von Willebrand factor type A domain DM194_13030 PF02342 TerD domain DM194_13035 PF03741 Integral membrane protein TerC family DM194_13040 PF05099 Tellurite resistance protein TerB DM194_13045 PF02342 TerD domain DM194_13050 PF02342 TerD domain DM194_13055 PF02342 TerD domain DM194_13085 PF01695 IstB-like ATP binding protein DM194_13090 PF02796 Helix-turn-helix domain of resolvase DM194_13090 PF00665 Integrase core domain DM194_13115 PF01521 Iron-sulphur cluster biosynthesis DM194_13120 PF01966 HD domain DM194_13120 PF13286 Phosphohydrolase-associated domain DM194_13125 PF03485 Arginyl tRNA synthetase N terminal domain DM194_13125 PF05746 DALR anticodon binding domain DM194_13125 PF00750 tRNA synthetases class I (R) DM194_13135 PF00933 Glycosyl hydrolase family 3 N terminal domain DM194_13140 PF02163 Peptidase family M50 DM194_13145 PF02616 Segregation and condensation protein ScpA DM194_13150 PF04079 Segregation and condensation complex subunit ScpB DM194_13155 PF02416 mttA/Hcf106 family DM194_13160 PF02416 mttA/Hcf106 family DM194_13165 PF00902 Sec-independent protein translocase protein (TatC) DM194_13170 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DM194_13170 PF01411 tRNA synthetases class II (A) DM194_13170 PF02272 DHHA1 domain DM194_13195 PF00149 Calcineurin-like phosphoesterase DM194_13195 PF12320 Type 5 capsule protein repressor C-terminal domain DM194_13225 PF02080 TrkA-C domain DM194_13225 PF03600 Citrate transporter DM194_13230 PF00571 CBS domain DM194_13240 PF00072 Response regulator receiver domain DM194_13245 PF00072 Response regulator receiver domain DM194_13245 PF09308 LuxQ, periplasmic DM194_13245 PF00512 His Kinase A (phospho-acceptor) domain DM194_13245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_13250 PF01192 RNA polymerase Rpb6 DM194_13260 PF02634 FdhD/NarQ family DM194_13275 PF02954 Bacterial regulatory protein, Fis family DM194_13275 PF00072 Response regulator receiver domain DM194_13275 PF00158 Sigma-54 interaction domain DM194_13280 PF00512 His Kinase A (phospho-acceptor) domain DM194_13280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_13280 PF02743 Cache domain DM194_13285 PF00375 Sodium:dicarboxylate symporter family DM194_13290 PF07237 Protein of unknown function (DUF1428) DM194_13295 PF01872 RibD C-terminal domain DM194_13300 PF01638 HxlR-like helix-turn-helix DM194_13305 PF03473 MOSC domain DM194_13305 PF03475 3-alpha domain DM194_13315 PF17674 HHH domain DM194_13315 PF00575 S1 RNA binding domain DM194_13315 PF09371 Tex-like protein N-terminal domain DM194_13315 PF16921 Tex protein YqgF-like domain DM194_13345 PF01906 Putative heavy-metal-binding DM194_13350 PF00561 alpha/beta hydrolase fold DM194_13360 PF07690 Major Facilitator Superfamily DM194_13365 PF13533 Biotin-lipoyl like DM194_13370 PF00440 Bacterial regulatory proteins, tetR family DM194_13370 PF16859 Tetracyclin repressor-like, C-terminal domain DM194_13375 PF00990 Diguanylate cyclase, GGDEF domain DM194_13380 PF01098 Cell cycle protein DM194_13390 PF12399 Branched-chain amino acid ATP-binding cassette transporter DM194_13390 PF00005 ABC transporter DM194_13395 PF02653 Branched-chain amino acid transport system / permease component DM194_13400 PF02653 Branched-chain amino acid transport system / permease component DM194_13415 PF00005 ABC transporter DM194_13420 PF01925 Sulfite exporter TauE/SafE DM194_13425 PF00501 AMP-binding enzyme DM194_13425 PF13193 AMP-binding enzyme C-terminal domain DM194_13430 PF16998 17 kDa outer membrane surface antigen DM194_13430 PF05433 Glycine zipper 2TM domain DM194_13440 PF00483 Nucleotidyl transferase DM194_13455 PF03949 Malic enzyme, NAD binding domain DM194_13455 PF00390 Malic enzyme, N-terminal domain DM194_13455 PF01515 Phosphate acetyl/butaryl transferase DM194_13460 PF00375 Sodium:dicarboxylate symporter family DM194_13465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_13465 PF00512 His Kinase A (phospho-acceptor) domain DM194_13470 PF00158 Sigma-54 interaction domain DM194_13470 PF00072 Response regulator receiver domain DM194_13470 PF02954 Bacterial regulatory protein, Fis family DM194_13480 PF03062 MBOAT, membrane-bound O-acyltransferase family DM194_13490 PF02446 4-alpha-glucanotransferase DM194_13495 PF00128 Alpha amylase, catalytic domain DM194_13505 PF00072 Response regulator receiver domain DM194_13505 PF00486 Transcriptional regulatory protein, C terminal DM194_13515 PF00378 Enoyl-CoA hydratase/isomerase DM194_13525 PF00043 Glutathione S-transferase, C-terminal domain DM194_13525 PF02798 Glutathione S-transferase, N-terminal domain DM194_13545 PF00149 Calcineurin-like phosphoesterase DM194_13545 PF02872 5'-nucleotidase, C-terminal domain DM194_13550 PF00512 His Kinase A (phospho-acceptor) domain DM194_13550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_13565 PF07559 Flagellar basal body protein FlaE DM194_13565 PF00460 Flagella basal body rod protein DM194_13565 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DM194_13565 PF00460 Flagella basal body rod protein DM194_13565 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DM194_13565 PF07559 Flagellar basal body protein FlaE DM194_13580 PF03480 Bacterial extracellular solute-binding protein, family 7 DM194_13585 PF00128 Alpha amylase, catalytic domain DM194_13600 PF07559 Flagellar basal body protein FlaE DM194_13600 PF00460 Flagella basal body rod protein DM194_13600 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DM194_13620 PF01209 ubiE/COQ5 methyltransferase family DM194_13655 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DM194_13655 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DM194_13675 PF00364 Biotin-requiring enzyme DM194_13675 PF00561 alpha/beta hydrolase fold DM194_13685 PF02348 Cytidylyltransferase DM194_13690 PF03102 NeuB family DM194_13690 PF08666 SAF domain DM194_13710 PF01627 Hpt domain DM194_13710 PF00072 Response regulator receiver domain DM194_13710 PF00672 HAMP domain DM194_13710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_13710 PF00512 His Kinase A (phospho-acceptor) domain DM194_13725 PF00300 Histidine phosphatase superfamily (branch 1) DM194_13730 PF00271 Helicase conserved C-terminal domain DM194_13730 PF00270 DEAD/DEAH box helicase DM194_13730 PF17191 RecG wedge domain DM194_13740 PF13807 G-rich domain on putative tyrosine kinase DM194_13740 PF13614 AAA domain DM194_13740 PF02706 Chain length determinant protein DM194_13755 PF00553 Cellulose binding domain DM194_13755 PF00150 Cellulase (glycosyl hydrolase family 5) DM194_13760 PF00132 Bacterial transferase hexapeptide (six repeats) DM194_13770 PF02397 Bacterial sugar transferase DM194_13780 PF00535 Glycosyl transferase family 2 DM194_13785 PF13439 Glycosyltransferase Family 4 DM194_13785 PF00534 Glycosyl transferases group 1 DM194_13790 PF13579 Glycosyl transferase 4-like domain DM194_13790 PF00534 Glycosyl transferases group 1 DM194_13805 PF13193 AMP-binding enzyme C-terminal domain DM194_13805 PF00501 AMP-binding enzyme DM194_13810 PF00733 Asparagine synthase DM194_13810 PF13537 Glutamine amidotransferase domain DM194_13815 PF02540 NAD synthase DM194_13835 PF02080 TrkA-C domain DM194_13835 PF00999 Sodium/hydrogen exchanger family DM194_13835 PF02254 TrkA-N domain DM194_13840 PF12857 TOBE-like domain DM194_13840 PF00005 ABC transporter DM194_13845 PF00528 Binding-protein-dependent transport system inner membrane component DM194_13850 PF00528 Binding-protein-dependent transport system inner membrane component DM194_13865 PF13426 PAS domain DM194_13865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_13865 PF00072 Response regulator receiver domain DM194_13875 PF13419 Haloacid dehalogenase-like hydrolase DM194_13880 PF08448 PAS fold DM194_13880 PF08447 PAS fold DM194_13880 PF00990 Diguanylate cyclase, GGDEF domain DM194_13880 PF00563 EAL domain DM194_13905 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DM194_13905 PF02770 Acyl-CoA dehydrogenase, middle domain DM194_13905 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DM194_13915 PF00440 Bacterial regulatory proteins, tetR family DM194_13930 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DM194_13930 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DM194_13935 PF00440 Bacterial regulatory proteins, tetR family DM194_13935 PF18665 Tetracyclin repressor-like, C-terminal domain DM194_13940 PF00501 AMP-binding enzyme DM194_13940 PF13193 AMP-binding enzyme C-terminal domain DM194_13945 PF00378 Enoyl-CoA hydratase/isomerase DM194_13945 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DM194_13945 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DM194_13950 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DM194_13950 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DM194_13950 PF12806 Acetyl-CoA dehydrogenase C-terminal like DM194_13950 PF02770 Acyl-CoA dehydrogenase, middle domain DM194_13960 PF00989 PAS fold DM194_13960 PF00990 Diguanylate cyclase, GGDEF domain DM194_13960 PF01590 GAF domain DM194_13960 PF00563 EAL domain DM194_13970 PF03466 LysR substrate binding domain DM194_13970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_13975 PF00202 Aminotransferase class-III DM194_13980 PF00171 Aldehyde dehydrogenase family DM194_13990 PF00860 Permease family DM194_14005 PF05853 beta-keto acid cleavage enzyme DM194_14010 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DM194_14010 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DM194_14015 PF00158 Sigma-54 interaction domain DM194_14015 PF02954 Bacterial regulatory protein, Fis family DM194_14015 PF00072 Response regulator receiver domain DM194_14020 PF00111 2Fe-2S iron-sulfur cluster binding domain DM194_14020 PF01799 [2Fe-2S] binding domain DM194_14025 PF00941 FAD binding domain in molybdopterin dehydrogenase DM194_14025 PF03450 CO dehydrogenase flavoprotein C-terminal domain DM194_14030 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DM194_14030 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DM194_14040 PF06745 KaiC DM194_14045 PF00072 Response regulator receiver domain DM194_14045 PF13188 PAS domain DM194_14045 PF00512 His Kinase A (phospho-acceptor) domain DM194_14045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_14045 PF08448 PAS fold DM194_14050 PF05661 Protein of unknown function (DUF808) DM194_14055 PF01235 Sodium:alanine symporter family DM194_14060 PF02447 GntP family permease DM194_14080 PF01209 ubiE/COQ5 methyltransferase family DM194_14095 PF13537 Glutamine amidotransferase domain DM194_14095 PF00733 Asparagine synthase DM194_14100 PF13614 AAA domain DM194_14105 PF00483 Nucleotidyl transferase DM194_14110 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DM194_14115 PF02397 Bacterial sugar transferase DM194_14120 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DM194_14120 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DM194_14120 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DM194_14125 PF00132 Bacterial transferase hexapeptide (six repeats) DM194_14130 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DM194_14140 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DM194_14140 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DM194_14140 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DM194_14145 PF16363 GDP-mannose 4,6 dehydratase DM194_14155 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DM194_14155 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DM194_14160 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DM194_14200 PF00528 Binding-protein-dependent transport system inner membrane component DM194_14205 PF00005 ABC transporter DM194_14215 PF17763 Glutaminase/Asparaginase C-terminal domain DM194_14215 PF00710 Asparaginase, N-terminal DM194_14220 PF00355 Rieske [2Fe-2S] domain DM194_14255 PF14759 Reductase C-terminal DM194_14255 PF07992 Pyridine nucleotide-disulphide oxidoreductase DM194_14260 PF00775 Dioxygenase DM194_14260 PF04444 Catechol dioxygenase N terminus DM194_14265 PF13378 Enolase C-terminal domain-like DM194_14265 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DM194_14270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_14270 PF03466 LysR substrate binding domain DM194_14275 PF02426 Muconolactone delta-isomerase DM194_14280 PF00392 Bacterial regulatory proteins, gntR family DM194_14280 PF07729 FCD domain DM194_14285 PF00561 alpha/beta hydrolase fold DM194_14290 PF00108 Thiolase, N-terminal domain DM194_14290 PF02803 Thiolase, C-terminal domain DM194_14295 PF01144 Coenzyme A transferase DM194_14300 PF01144 Coenzyme A transferase DM194_14305 PF00107 Zinc-binding dehydrogenase DM194_14305 PF08240 Alcohol dehydrogenase GroES-like domain DM194_14310 PF02634 FdhD/NarQ family DM194_14315 PF01292 Prokaryotic cytochrome b561 DM194_14320 PF13247 4Fe-4S dicluster domain DM194_14320 PF12800 4Fe-4S binding domain DM194_14320 PF09163 Formate dehydrogenase N, transmembrane DM194_14325 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DM194_14325 PF00384 Molybdopterin oxidoreductase DM194_14325 PF01568 Molydopterin dinucleotide binding domain DM194_14330 PF04216 Protein involved in formate dehydrogenase formation DM194_14335 PF00512 His Kinase A (phospho-acceptor) domain DM194_14335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_14335 PF00989 PAS fold DM194_14340 PF00072 Response regulator receiver domain DM194_14340 PF02954 Bacterial regulatory protein, Fis family DM194_14340 PF00158 Sigma-54 interaction domain DM194_14350 PF00005 ABC transporter DM194_14375 PF00732 GMC oxidoreductase DM194_14375 PF05199 GMC oxidoreductase DM194_14385 PF02371 Transposase IS116/IS110/IS902 family DM194_14385 PF01548 Transposase DM194_14445 PF07729 FCD domain DM194_14445 PF00392 Bacterial regulatory proteins, gntR family DM194_14455 PF01037 Lrp/AsnC ligand binding domain DM194_14460 PF00501 AMP-binding enzyme DM194_14460 PF13193 AMP-binding enzyme C-terminal domain DM194_14460 PF00668 Condensation domain DM194_14460 PF00550 Phosphopantetheine attachment site DM194_14465 PF05683 Fumarase C-terminus DM194_14465 PF05681 Fumarate hydratase (Fumerase) DM194_14480 PF00849 RNA pseudouridylate synthase DM194_14485 PF00512 His Kinase A (phospho-acceptor) domain DM194_14485 PF00072 Response regulator receiver domain DM194_14485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_14485 PF09456 RcsC Alpha-Beta-Loop (ABL) DM194_14490 PF02678 Pirin DM194_14490 PF17954 Quercetinase C-terminal cupin domain DM194_14495 PF05128 Domain of unknown function (DUF697) DM194_14500 PF04317 YcjX-like family, DUF463 DM194_14505 PF00682 HMGL-like DM194_14510 PF02785 Biotin carboxylase C-terminal domain DM194_14510 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DM194_14510 PF00364 Biotin-requiring enzyme DM194_14510 PF00289 Biotin carboxylase, N-terminal domain DM194_14515 PF00378 Enoyl-CoA hydratase/isomerase DM194_14520 PF01039 Carboxyl transferase domain DM194_14525 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DM194_14525 PF02770 Acyl-CoA dehydrogenase, middle domain DM194_14525 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DM194_14530 PF02803 Thiolase, C-terminal domain DM194_14530 PF00108 Thiolase, N-terminal domain DM194_14535 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DM194_14535 PF02770 Acyl-CoA dehydrogenase, middle domain DM194_14535 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DM194_14540 PF13593 SBF-like CPA transporter family (DUF4137) DM194_14560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_14560 PF00512 His Kinase A (phospho-acceptor) domain DM194_14615 PF00271 Helicase conserved C-terminal domain DM194_14615 PF00176 SNF2 family N-terminal domain DM194_14665 PF00561 alpha/beta hydrolase fold DM194_14685 PF14490 Helix-hairpin-helix containing domain DM194_14685 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain DM194_14685 PF13538 UvrD-like helicase C-terminal domain DM194_14690 PF13086 AAA domain DM194_14690 PF13195 Protein of unknown function (DUF4011) DM194_14690 PF13087 AAA domain DM194_14690 PF13086 AAA domain DM194_14690 PF13087 AAA domain DM194_14690 PF13195 Protein of unknown function (DUF4011) DM194_14755 PF05717 IS66 Orf2 like protein DM194_14760 PF03050 Transposase IS66 family DM194_14760 PF13817 IS66 C-terminal element DM194_14760 PF13007 Transposase C of IS166 homeodomain DM194_14760 PF13005 zinc-finger binding domain of transposase IS66 DM194_14795 PF05443 ROS/MUCR transcriptional regulator protein DM194_14805 PF03861 ANTAR domain DM194_14805 PF00072 Response regulator receiver domain DM194_14820 PF02811 PHP domain DM194_14820 PF07733 Bacterial DNA polymerase III alpha NTPase domain DM194_14820 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DM194_14820 PF14579 Helix-hairpin-helix motif DM194_14830 PF09335 SNARE associated Golgi protein DM194_14835 PF01435 Peptidase family M48 DM194_14840 PF05974 Domain of unknown function (DUF892) DM194_14845 PF00248 Aldo/keto reductase family DM194_14850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_14850 PF03466 LysR substrate binding domain DM194_14860 PF00664 ABC transporter transmembrane region DM194_14860 PF00005 ABC transporter DM194_14885 PF00665 Integrase core domain DM194_14885 PF02796 Helix-turn-helix domain of resolvase DM194_14890 PF01695 IstB-like ATP binding protein DM194_14920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_14920 PF03466 LysR substrate binding domain DM194_14925 PF14552 Tautomerase enzyme DM194_14935 PF00561 alpha/beta hydrolase fold DM194_14950 PF01037 Lrp/AsnC ligand binding domain DM194_14955 PF00288 GHMP kinases N terminal domain DM194_14960 PF00291 Pyridoxal-phosphate dependent enzyme DM194_14965 PF02655 ATP-grasp domain DM194_14965 PF00206 Lyase DM194_14975 PF02655 ATP-grasp domain DM194_14975 PF00206 Lyase DM194_14980 PF04002 RadC-like JAB domain DM194_14985 PF01381 Helix-turn-helix DM194_14995 PF01223 DNA/RNA non-specific endonuclease DM194_15000 PF01555 DNA methylase DM194_15125 PF12323 Helix-turn-helix domain DM194_15125 PF01385 Probable transposase DM194_15125 PF07282 Putative transposase DNA-binding domain DM194_15155 PF01381 Helix-turn-helix DM194_15185 PF01385 Probable transposase DM194_15185 PF12323 Helix-turn-helix domain DM194_15185 PF07282 Putative transposase DNA-binding domain DM194_15235 PF01695 IstB-like ATP binding protein DM194_15240 PF00665 Integrase core domain DM194_15240 PF02796 Helix-turn-helix domain of resolvase DM194_15280 PF02446 4-alpha-glucanotransferase DM194_15290 PF00128 Alpha amylase, catalytic domain DM194_15290 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DM194_15295 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DM194_15295 PF02806 Alpha amylase, C-terminal all-beta domain DM194_15295 PF00128 Alpha amylase, catalytic domain DM194_15300 PF00128 Alpha amylase, catalytic domain DM194_15300 PF16657 Maltogenic Amylase, C-terminal domain DM194_15305 PF00155 Aminotransferase class I and II DM194_15305 PF00392 Bacterial regulatory proteins, gntR family DM194_15315 PF00691 OmpA family DM194_15320 PF00132 Bacterial transferase hexapeptide (six repeats) DM194_15325 PF01118 Semialdehyde dehydrogenase, NAD binding domain DM194_15325 PF02774 Semialdehyde dehydrogenase, dimerisation domain DM194_15330 PF00380 Ribosomal protein S9/S16 DM194_15335 PF00572 Ribosomal protein L13 DM194_15355 PF03781 Sulfatase-modifying factor enzyme 1 DM194_15360 PF03466 LysR substrate binding domain DM194_15360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_15365 PF02798 Glutathione S-transferase, N-terminal domain DM194_15385 PF00005 ABC transporter DM194_15390 PF12399 Branched-chain amino acid ATP-binding cassette transporter DM194_15390 PF00005 ABC transporter DM194_15400 PF02653 Branched-chain amino acid transport system / permease component DM194_15420 PF02634 FdhD/NarQ family DM194_15425 PF00037 4Fe-4S binding domain DM194_15425 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DM194_15425 PF00384 Molybdopterin oxidoreductase DM194_15425 PF01568 Molydopterin dinucleotide binding domain DM194_15425 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DM194_15430 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DM194_15430 PF00037 4Fe-4S binding domain DM194_15430 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DM194_15440 PF03466 LysR substrate binding domain DM194_15440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_15445 PF08450 SMP-30/Gluconolactonase/LRE-like region DM194_15465 PF00512 His Kinase A (phospho-acceptor) domain DM194_15465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_15465 PF13188 PAS domain DM194_15465 PF00989 PAS fold DM194_15470 PF00072 Response regulator receiver domain DM194_15470 PF01627 Hpt domain DM194_15470 PF00512 His Kinase A (phospho-acceptor) domain DM194_15470 PF00672 HAMP domain DM194_15470 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DM194_15470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_15480 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DM194_15485 PF17762 HTH domain found in ParB protein DM194_15485 PF02195 ParB-like nuclease domain DM194_15490 PF13614 AAA domain DM194_15515 PF05088 Bacterial NAD-glutamate dehydrogenase DM194_15520 PF00224 Pyruvate kinase, barrel domain DM194_15520 PF02887 Pyruvate kinase, alpha/beta domain DM194_15535 PF00072 Response regulator receiver domain DM194_15535 PF00486 Transcriptional regulatory protein, C terminal DM194_15540 PF13755 Sensor N-terminal transmembrane domain DM194_15540 PF13756 Stimulus-sensing domain DM194_15540 PF00512 His Kinase A (phospho-acceptor) domain DM194_15540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_15540 PF00672 HAMP domain DM194_15545 PF01037 Lrp/AsnC ligand binding domain DM194_15550 PF08361 MAATS-type transcriptional repressor, C-terminal region DM194_15550 PF00440 Bacterial regulatory proteins, tetR family DM194_15555 PF13193 AMP-binding enzyme C-terminal domain DM194_15555 PF00501 AMP-binding enzyme DM194_15560 PF00005 ABC transporter DM194_15560 PF12399 Branched-chain amino acid ATP-binding cassette transporter DM194_15565 PF00501 AMP-binding enzyme DM194_15570 PF02653 Branched-chain amino acid transport system / permease component DM194_15585 PF00005 ABC transporter DM194_15590 PF13193 AMP-binding enzyme C-terminal domain DM194_15590 PF00501 AMP-binding enzyme DM194_15600 PF00072 Response regulator receiver domain DM194_15620 PF02627 Carboxymuconolactone decarboxylase family DM194_15625 PF01799 [2Fe-2S] binding domain DM194_15625 PF00111 2Fe-2S iron-sulfur cluster binding domain DM194_15630 PF03450 CO dehydrogenase flavoprotein C-terminal domain DM194_15630 PF00941 FAD binding domain in molybdopterin dehydrogenase DM194_15635 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DM194_15635 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DM194_15640 PF03466 LysR substrate binding domain DM194_15640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_15650 PF00456 Transketolase, thiamine diphosphate binding domain DM194_15655 PF02780 Transketolase, C-terminal domain DM194_15655 PF02779 Transketolase, pyrimidine binding domain DM194_15660 PF03480 Bacterial extracellular solute-binding protein, family 7 DM194_15660 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component DM194_15665 PF03480 Bacterial extracellular solute-binding protein, family 7 DM194_15665 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component DM194_15670 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DM194_15675 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DM194_15675 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DM194_15680 PF00694 Aconitase C-terminal domain DM194_15685 PF00330 Aconitase family (aconitate hydratase) DM194_15695 PF00857 Isochorismatase family DM194_15700 PF01968 Hydantoinase/oxoprolinase DM194_15700 PF05378 Hydantoinase/oxoprolinase N-terminal region DM194_15705 PF02538 Hydantoinase B/oxoprolinase DM194_15715 PF00005 ABC transporter DM194_15720 PF12399 Branched-chain amino acid ATP-binding cassette transporter DM194_15720 PF00005 ABC transporter DM194_15725 PF11862 Domain of unknown function (DUF3382) DM194_15725 PF02653 Branched-chain amino acid transport system / permease component DM194_15730 PF02653 Branched-chain amino acid transport system / permease component DM194_15735 PF13458 Periplasmic binding protein DM194_15740 PF00392 Bacterial regulatory proteins, gntR family DM194_15740 PF07702 UTRA domain DM194_15745 PF12729 Four helix bundle sensory module for signal transduction DM194_15745 PF00672 HAMP domain DM194_15745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_15750 PF00005 ABC transporter DM194_15750 PF12848 ABC transporter DM194_15775 PF08239 Bacterial SH3 domain DM194_15775 PF00069 Protein kinase domain DM194_15780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_15780 PF07568 Histidine kinase DM194_15780 PF12282 Signal transduction histidine kinase DM194_15785 PF00561 alpha/beta hydrolase fold DM194_15785 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus DM194_15795 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DM194_15795 PF00529 HlyD membrane-fusion protein of T1SS DM194_15800 PF00664 ABC transporter transmembrane region DM194_15800 PF00005 ABC transporter DM194_15805 PF08534 Redoxin DM194_15820 PF00113 Enolase, C-terminal TIM barrel domain DM194_15820 PF03952 Enolase, N-terminal domain DM194_15825 PF12697 Alpha/beta hydrolase family DM194_15830 PF03023 Lipid II flippase MurJ DM194_15835 PF00581 Rhodanese-like domain DM194_15840 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DM194_15845 PF00291 Pyridoxal-phosphate dependent enzyme DM194_15855 PF02637 GatB domain DM194_15855 PF02934 GatB/GatE catalytic domain DM194_15860 PF00497 Bacterial extracellular solute-binding proteins, family 3 DM194_15860 PF00512 His Kinase A (phospho-acceptor) domain DM194_15860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_15880 PF02796 Helix-turn-helix domain of resolvase DM194_15880 PF00239 Resolvase, N terminal domain DM194_15890 PF02899 Phage integrase, N-terminal SAM-like domain DM194_15890 PF00589 Phage integrase family DM194_15895 PF00589 Phage integrase family DM194_15895 PF02899 Phage integrase, N-terminal SAM-like domain DM194_15900 PF07690 Major Facilitator Superfamily DM194_15905 PF02581 Thiamine monophosphate synthase DM194_15910 PF00392 Bacterial regulatory proteins, gntR family DM194_15910 PF07729 FCD domain DM194_15915 PF02887 Pyruvate kinase, alpha/beta domain DM194_15915 PF00224 Pyruvate kinase, barrel domain DM194_15925 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DM194_15925 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DM194_15930 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DM194_15930 PF02896 PEP-utilising enzyme, TIM barrel domain DM194_15930 PF00391 PEP-utilising enzyme, mobile domain DM194_15935 PF00850 Histone deacetylase domain DM194_15940 PF00571 CBS domain DM194_15955 PF07690 Major Facilitator Superfamily DM194_15965 PF02558 Ketopantoate reductase PanE/ApbA DM194_15965 PF08546 Ketopantoate reductase PanE/ApbA C terminal DM194_15970 PF00571 CBS domain DM194_15975 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DM194_15975 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DM194_15980 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch DM194_15985 PF02233 NAD(P) transhydrogenase beta subunit DM194_15990 PF01014 Uricase DM194_15990 PF09349 OHCU decarboxylase DM194_16000 PF00576 HIUase/Transthyretin family DM194_16005 PF00205 Thiamine pyrophosphate enzyme, central domain DM194_16005 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DM194_16005 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DM194_16010 PF03466 LysR substrate binding domain DM194_16010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_16015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_16015 PF08447 PAS fold DM194_16015 PF13426 PAS domain DM194_16020 PF01614 Bacterial transcriptional regulator DM194_16020 PF09339 IclR helix-turn-helix domain DM194_16025 PF07729 FCD domain DM194_16025 PF00392 Bacterial regulatory proteins, gntR family DM194_16030 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DM194_16030 PF00205 Thiamine pyrophosphate enzyme, central domain DM194_16030 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DM194_16035 PF02515 CoA-transferase family III DM194_16040 PF00549 CoA-ligase DM194_16040 PF08442 ATP-grasp domain DM194_16045 PF02629 CoA binding domain DM194_16045 PF00549 CoA-ligase DM194_16050 PF09339 IclR helix-turn-helix domain DM194_16050 PF01614 Bacterial transcriptional regulator DM194_16055 PF00698 Acyl transferase domain DM194_16055 PF08659 KR domain DM194_16055 PF14765 Polyketide synthase dehydratase DM194_16055 PF08240 Alcohol dehydrogenase GroES-like domain DM194_16055 PF16197 Ketoacyl-synthetase C-terminal extension DM194_16055 PF00550 Phosphopantetheine attachment site DM194_16055 PF00109 Beta-ketoacyl synthase, N-terminal domain DM194_16055 PF02801 Beta-ketoacyl synthase, C-terminal domain DM194_16065 PF04972 BON domain DM194_16070 PF01520 N-acetylmuramoyl-L-alanine amidase DM194_16080 PF00551 Formyl transferase DM194_16085 PF00072 Response regulator receiver domain DM194_16095 PF13193 AMP-binding enzyme C-terminal domain DM194_16095 PF00501 AMP-binding enzyme DM194_16105 PF00892 EamA-like transporter family DM194_16110 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DM194_16115 PF00528 Binding-protein-dependent transport system inner membrane component DM194_16120 PF00528 Binding-protein-dependent transport system inner membrane component DM194_16120 PF12911 N-terminal TM domain of oligopeptide transport permease C DM194_16125 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DM194_16125 PF00005 ABC transporter DM194_16130 PF00005 ABC transporter DM194_16130 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DM194_16135 PF04461 Protein of unknown function (DUF520) DM194_16145 PF06965 Na+/H+ antiporter 1 DM194_16145 PF01343 Peptidase family S49 DM194_16150 PF17827 PrmC N-terminal domain DM194_16150 PF05175 Methyltransferase small domain DM194_16160 PF00348 Polyprenyl synthetase DM194_16180 PF00149 Calcineurin-like phosphoesterase DM194_16190 PF03458 UPF0126 domain DM194_16200 PF00403 Heavy-metal-associated domain DM194_16205 PF09278 MerR, DNA binding DM194_16205 PF00376 MerR family regulatory protein DM194_16220 PF07690 Major Facilitator Superfamily DM194_16240 PF00561 alpha/beta hydrolase fold DM194_16250 PF00155 Aminotransferase class I and II DM194_16255 PF07969 Amidohydrolase family DM194_16265 PF02653 Branched-chain amino acid transport system / permease component DM194_16285 PF01614 Bacterial transcriptional regulator DM194_16285 PF09339 IclR helix-turn-helix domain DM194_16290 PF08402 TOBE domain DM194_16290 PF00005 ABC transporter DM194_16295 PF00528 Binding-protein-dependent transport system inner membrane component DM194_16300 PF00528 Binding-protein-dependent transport system inner membrane component DM194_16310 PF04324 BFD-like [2Fe-2S] binding domain DM194_16310 PF07992 Pyridine nucleotide-disulphide oxidoreductase DM194_16330 PF07995 Glucose / Sorbosone dehydrogenase DM194_16340 PF00118 TCP-1/cpn60 chaperonin family DM194_16345 PF00166 Chaperonin 10 Kd subunit DM194_16350 PF00107 Zinc-binding dehydrogenase DM194_16350 PF08240 Alcohol dehydrogenase GroES-like domain DM194_16355 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DM194_16355 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DM194_16360 PF00356 Bacterial regulatory proteins, lacI family DM194_16365 PF01380 SIS domain DM194_16370 PF14602 Hexapeptide repeat of succinyl-transferase DM194_16370 PF00132 Bacterial transferase hexapeptide (six repeats) DM194_16370 PF12804 MobA-like NTP transferase domain DM194_16425 PF05717 IS66 Orf2 like protein DM194_16430 PF13005 zinc-finger binding domain of transposase IS66 DM194_16430 PF13007 Transposase C of IS166 homeodomain DM194_16430 PF03050 Transposase IS66 family DM194_16430 PF13817 IS66 C-terminal element DM194_16475 PF02899 Phage integrase, N-terminal SAM-like domain DM194_16475 PF00589 Phage integrase family DM194_16480 PF07352 Bacteriophage Mu Gam like protein DM194_16485 PF01555 DNA methylase DM194_16485 PF18755 Restriction Enzyme Adenine Methylase Associated DM194_16630 PF02569 Pantoate-beta-alanine ligase DM194_16640 PF01474 Class-II DAHP synthetase family DM194_16645 PF07690 Major Facilitator Superfamily DM194_16650 PF05067 Manganese containing catalase DM194_16655 PF07992 Pyridine nucleotide-disulphide oxidoreductase DM194_16655 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DM194_16665 PF00571 CBS domain DM194_16665 PF00005 ABC transporter DM194_16670 PF00528 Binding-protein-dependent transport system inner membrane component DM194_16675 PF00440 Bacterial regulatory proteins, tetR family DM194_16675 PF13977 BetI-type transcriptional repressor, C-terminal DM194_16680 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DM194_16685 PF12804 MobA-like NTP transferase domain DM194_16695 PF02872 5'-nucleotidase, C-terminal domain DM194_16695 PF00149 Calcineurin-like phosphoesterase DM194_16720 PF00291 Pyridoxal-phosphate dependent enzyme DM194_16730 PF11849 Domain of unknown function (DUF3369) DM194_16735 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DM194_16740 PF00512 His Kinase A (phospho-acceptor) domain DM194_16740 PF02743 Cache domain DM194_16740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_16745 PF02625 XdhC and CoxI family DM194_16745 PF13478 XdhC Rossmann domain DM194_16765 PF03450 CO dehydrogenase flavoprotein C-terminal domain DM194_16765 PF00941 FAD binding domain in molybdopterin dehydrogenase DM194_16770 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DM194_16770 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DM194_16775 PF00111 2Fe-2S iron-sulfur cluster binding domain DM194_16775 PF01799 [2Fe-2S] binding domain DM194_16780 PF16868 NMT1-like family DM194_16805 PF00873 AcrB/AcrD/AcrF family DM194_16820 PF02810 SEC-C motif DM194_16830 PF00155 Aminotransferase class I and II DM194_16835 PF00994 Probable molybdopterin binding domain DM194_16840 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DM194_16845 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component DM194_16845 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DM194_16850 PF03480 Bacterial extracellular solute-binding protein, family 7 DM194_16860 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family DM194_16865 PF00195 Chalcone and stilbene synthases, N-terminal domain DM194_16865 PF02797 Chalcone and stilbene synthases, C-terminal domain DM194_16875 PF00708 Acylphosphatase DM194_16875 PF17788 HypF Kae1-like domain DM194_16875 PF01300 Telomere recombination DM194_16875 PF07503 HypF finger DM194_16885 PF01292 Prokaryotic cytochrome b561 DM194_16890 PF00374 Nickel-dependent hydrogenase DM194_16895 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal DM194_16895 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DM194_16900 PF04955 HupE / UreJ protein DM194_16905 PF00158 Sigma-54 interaction domain DM194_16905 PF00072 Response regulator receiver domain DM194_16905 PF02954 Bacterial regulatory protein, Fis family DM194_16910 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DM194_16915 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE DM194_16915 PF00301 Rubredoxin DM194_16920 PF04809 HupH hydrogenase expression protein, C-terminal conserved region DM194_16925 PF07449 Hydrogenase-1 expression protein HyaE DM194_16930 PF01455 HupF/HypC family DM194_16935 PF01750 Hydrogenase maturation protease DM194_16940 PF07769 psiF repeat DM194_16945 PF00374 Nickel-dependent hydrogenase DM194_16950 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DM194_16950 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal DM194_16955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_16955 PF00989 PAS fold DM194_16955 PF00512 His Kinase A (phospho-acceptor) domain DM194_16960 PF07869 Protein of unknown function (DUF1656) DM194_16965 PF04632 Fusaric acid resistance protein family DM194_16970 PF13533 Biotin-lipoyl like DM194_16980 PF03819 MazG nucleotide pyrophosphohydrolase domain DM194_16990 PF00535 Glycosyl transferase family 2 DM194_17000 PF01593 Flavin containing amine oxidoreductase DM194_17005 PF01593 Flavin containing amine oxidoreductase DM194_17015 PF02803 Thiolase, C-terminal domain DM194_17015 PF00108 Thiolase, N-terminal domain DM194_17020 PF00378 Enoyl-CoA hydratase/isomerase DM194_17030 PF04545 Sigma-70, region 4 DM194_17030 PF04542 Sigma-70 region 2 DM194_17035 PF12973 ChrR Cupin-like domain DM194_17080 PF02289 Cyclohydrolase (MCH) DM194_17085 PF09176 Methylene-tetrahydromethanopterin dehydrogenase, N-terminal DM194_17100 PF07969 Amidohydrolase family DM194_17105 PF01913 Formylmethanofuran-tetrahydromethanopterin formyltransferase DM194_17105 PF02741 FTR, proximal lobe DM194_17130 PF08714 Formaldehyde-activating enzyme (Fae) DM194_17145 PF18030 RimK PreATP-grasp domain DM194_17145 PF08443 RimK-like ATP-grasp domain DM194_17155 PF00005 ABC transporter DM194_17165 PF13360 PQQ-like domain DM194_17210 PF04476 4-HFC-P synthase DM194_17215 PF01568 Molydopterin dinucleotide binding domain DM194_17215 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DM194_17215 PF00384 Molybdopterin oxidoreductase DM194_17215 PF12838 4Fe-4S dicluster domain DM194_17215 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DM194_17220 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DM194_17220 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DM194_17220 PF10531 SLBB domain DM194_17255 PF00313 'Cold-shock' DNA-binding domain DM194_17265 PF00672 HAMP domain DM194_17265 PF00211 Adenylate and Guanylate cyclase catalytic domain DM194_17265 PF02743 Cache domain DM194_17275 PF01895 PhoU domain DM194_17280 PF13393 Histidyl-tRNA synthetase DM194_17285 PF00709 Adenylosuccinate synthetase DM194_17295 PF02082 Transcriptional regulator DM194_17300 PF00753 Metallo-beta-lactamase superfamily DM194_17305 PF02195 ParB-like nuclease domain DM194_17305 PF17762 HTH domain found in ParB protein DM194_17320 PF01274 Malate synthase DM194_17350 PF01458 Uncharacterized protein family (UPF0051) DM194_17355 PF00005 ABC transporter DM194_17360 PF01458 Uncharacterized protein family (UPF0051) DM194_17365 PF00266 Aminotransferase class-V DM194_17370 PF01592 NifU-like N terminal domain DM194_17375 PF01883 Iron-sulfur cluster assembly protein DM194_17380 PF01521 Iron-sulphur cluster biosynthesis DM194_17390 PF05726 Pirin C-terminal cupin domain DM194_17390 PF02678 Pirin DM194_17400 PF00563 EAL domain DM194_17400 PF00990 Diguanylate cyclase, GGDEF domain DM194_17400 PF03707 Bacterial signalling protein N terminal repeat DM194_17405 PF13458 Periplasmic binding protein DM194_17410 PF09339 IclR helix-turn-helix domain DM194_17410 PF01614 Bacterial transcriptional regulator DM194_17420 PF01081 KDPG and KHG aldolase DM194_17425 PF03401 Tripartite tricarboxylate transporter family receptor DM194_17435 PF01970 Tripartite tricarboxylate transporter TctA family DM194_17445 PF00753 Metallo-beta-lactamase superfamily DM194_17450 PF14552 Tautomerase enzyme DM194_17455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_17455 PF03466 LysR substrate binding domain DM194_17460 PF00330 Aconitase family (aconitate hydratase) DM194_17460 PF11791 Aconitate B N-terminal domain DM194_17460 PF06434 Aconitate hydratase 2 N-terminus DM194_17465 PF03737 Aldolase/RraA DM194_17475 PF01380 SIS domain DM194_17475 PF01418 Helix-turn-helix domain, rpiR family DM194_17475 PF02685 Glucokinase DM194_17480 PF02901 Pyruvate formate lyase-like DM194_17480 PF01228 Glycine radical DM194_17485 PF04055 Radical SAM superfamily DM194_17495 PF00356 Bacterial regulatory proteins, lacI family DM194_17500 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg DM194_17500 PF10371 Domain of unknown function DM194_17500 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II DM194_17500 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase DM194_17500 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DM194_17505 PF13419 Haloacid dehalogenase-like hydrolase DM194_17520 PF00664 ABC transporter transmembrane region DM194_17520 PF00005 ABC transporter DM194_17520 PF03412 Peptidase C39 family DM194_17525 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DM194_17525 PF00529 HlyD membrane-fusion protein of T1SS DM194_17535 PF13533 Biotin-lipoyl like DM194_17540 PF00873 AcrB/AcrD/AcrF family DM194_17545 PF00144 Beta-lactamase DM194_17550 PF01367 5'-3' exonuclease, C-terminal SAM fold DM194_17550 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DM194_17550 PF00476 DNA polymerase family A DM194_17550 PF01612 3'-5' exonuclease DM194_17555 PF00072 Response regulator receiver domain DM194_17555 PF00486 Transcriptional regulatory protein, C terminal DM194_17575 PF09345 Domain of unknown function (DUF1987) DM194_17580 PF00989 PAS fold DM194_17580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_17580 PF00512 His Kinase A (phospho-acceptor) domain DM194_17580 PF16736 Single Cache-like DM194_17585 PF00990 Diguanylate cyclase, GGDEF domain DM194_17585 PF17151 Periplasmic sensor domain DM194_17595 PF04371 Porphyromonas-type peptidyl-arginine deiminase DM194_17605 PF00528 Binding-protein-dependent transport system inner membrane component DM194_17610 PF00528 Binding-protein-dependent transport system inner membrane component DM194_17615 PF08402 TOBE domain DM194_17615 PF00005 ABC transporter DM194_17620 PF13416 Bacterial extracellular solute-binding protein DM194_17625 PF00892 EamA-like transporter family DM194_17630 PF01040 UbiA prenyltransferase family DM194_17635 PF00120 Glutamine synthetase, catalytic domain DM194_17640 PF01266 FAD dependent oxidoreductase DM194_17650 PF02463 RecF/RecN/SMC N terminal domain DM194_17665 PF14815 NUDIX domain DM194_17665 PF00730 HhH-GPD superfamily base excision DNA repair protein DM194_17665 PF00633 Helix-hairpin-helix motif DM194_17665 PF10576 Iron-sulfur binding domain of endonuclease III DM194_17675 PF01266 FAD dependent oxidoreductase DM194_17685 PF03922 OmpW family DM194_17690 PF00571 CBS domain DM194_17690 PF00478 IMP dehydrogenase / GMP reductase domain DM194_17695 PF00072 Response regulator receiver domain DM194_17695 PF00196 Bacterial regulatory proteins, luxR family DM194_17700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DM194_17700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DM194_17700 PF12806 Acetyl-CoA dehydrogenase C-terminal like DM194_17700 PF02770 Acyl-CoA dehydrogenase, middle domain DM194_17705 PF00378 Enoyl-CoA hydratase/isomerase DM194_17705 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DM194_17705 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DM194_17710 PF02803 Thiolase, C-terminal domain DM194_17710 PF00108 Thiolase, N-terminal domain DM194_17715 PF09278 MerR, DNA binding DM194_17715 PF00376 MerR family regulatory protein DM194_17725 PF00207 Alpha-2-macroglobulin family DM194_17725 PF07703 Alpha-2-macroglobulin bait region domain DM194_17725 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain DM194_17725 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain DM194_17725 PF11974 Bacterial alpha-2-macroglobulin MG3 domain DM194_17725 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain DM194_17725 PF17962 Bacterial macroglobulin domain 6 DM194_17725 PF01835 MG2 domain DM194_17730 PF00155 Aminotransferase class I and II DM194_17745 PF03600 Citrate transporter DM194_17745 PF02080 TrkA-C domain DM194_17775 PF02515 CoA-transferase family III DM194_17780 PF00202 Aminotransferase class-III DM194_17785 PF00171 Aldehyde dehydrogenase family DM194_17790 PF07883 Cupin domain DM194_17790 PF01381 Helix-turn-helix DM194_17795 PF00528 Binding-protein-dependent transport system inner membrane component DM194_17800 PF00528 Binding-protein-dependent transport system inner membrane component DM194_17805 PF13416 Bacterial extracellular solute-binding protein DM194_17810 PF00005 ABC transporter DM194_17810 PF08402 TOBE domain DM194_17815 PF03480 Bacterial extracellular solute-binding protein, family 7 DM194_17820 PF03707 Bacterial signalling protein N terminal repeat DM194_17820 PF00990 Diguanylate cyclase, GGDEF domain DM194_17820 PF00563 EAL domain DM194_17825 PF15887 Putative zinc-binding metallo-peptidase DM194_17825 PF10005 zinc-ribbon domain DM194_17830 PF00128 Alpha amylase, catalytic domain DM194_17830 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DM194_17835 PF03466 LysR substrate binding domain DM194_17835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_17840 PF06628 Catalase-related immune-responsive DM194_17840 PF00199 Catalase DM194_17855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_17855 PF03466 LysR substrate binding domain DM194_17860 PF07687 Peptidase dimerisation domain DM194_17860 PF01546 Peptidase family M20/M25/M40 DM194_17865 PF00596 Class II Aldolase and Adducin N-terminal domain DM194_17870 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DM194_17875 PF00528 Binding-protein-dependent transport system inner membrane component DM194_17885 PF00005 ABC transporter DM194_17885 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DM194_17890 PF08546 Ketopantoate reductase PanE/ApbA C terminal DM194_17890 PF02558 Ketopantoate reductase PanE/ApbA DM194_17895 PF01546 Peptidase family M20/M25/M40 DM194_17895 PF07687 Peptidase dimerisation domain DM194_17900 PF00850 Histone deacetylase domain DM194_17905 PF00892 EamA-like transporter family DM194_17915 PF00232 Glycosyl hydrolase family 1 DM194_17930 PF05717 IS66 Orf2 like protein DM194_17935 PF13005 zinc-finger binding domain of transposase IS66 DM194_17935 PF13007 Transposase C of IS166 homeodomain DM194_17935 PF13817 IS66 C-terminal element DM194_17935 PF03050 Transposase IS66 family DM194_17970 PF01270 Glycosyl hydrolases family 8 DM194_17980 PF03552 Cellulose synthase DM194_17980 PF00535 Glycosyl transferase family 2 DM194_17980 PF07238 PilZ domain DM194_18000 PF00989 PAS fold DM194_18000 PF00512 His Kinase A (phospho-acceptor) domain DM194_18000 PF16736 Single Cache-like DM194_18000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_18005 PF01739 CheR methyltransferase, SAM binding domain DM194_18005 PF08448 PAS fold DM194_18005 PF01339 CheB methylesterase DM194_18005 PF03705 CheR methyltransferase, all-alpha domain DM194_18010 PF00795 Carbon-nitrogen hydrolase DM194_18010 PF02540 NAD synthase DM194_18025 PF03739 Lipopolysaccharide export system permease LptF/LptG DM194_18035 PF07995 Glucose / Sorbosone dehydrogenase DM194_18040 PF00266 Aminotransferase class-V DM194_18050 PF03746 LamB/YcsF family DM194_18060 PF13614 AAA domain DM194_18090 PF00221 Aromatic amino acid lyase DM194_18095 PF01979 Amidohydrolase family DM194_18100 PF01979 Amidohydrolase family DM194_18105 PF07702 UTRA domain DM194_18105 PF00392 Bacterial regulatory proteins, gntR family DM194_18110 PF01175 Urocanase Rossmann-like domain DM194_18110 PF17392 Urocanase C-terminal domain DM194_18110 PF17391 Urocanase N-terminal domain DM194_18120 PF01063 Amino-transferase class IV DM194_18125 PF04715 Anthranilate synthase component I, N terminal region DM194_18125 PF00425 chorismate binding enzyme DM194_18140 PF07724 AAA domain (Cdc48 subfamily) DM194_18140 PF02861 Clp amino terminal domain, pathogenicity island component DM194_18140 PF17871 AAA lid domain DM194_18140 PF10431 C-terminal, D2-small domain, of ClpB protein DM194_18140 PF00004 ATPase family associated with various cellular activities (AAA) DM194_18145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_18145 PF03466 LysR substrate binding domain DM194_18150 PF00691 OmpA family DM194_18150 PF01389 OmpA-like transmembrane domain DM194_18155 PF00999 Sodium/hydrogen exchanger family DM194_18165 PF05199 GMC oxidoreductase DM194_18165 PF00732 GMC oxidoreductase DM194_18185 PF13677 Membrane MotB of proton-channel complex MotA/MotB DM194_18185 PF00691 OmpA family DM194_18200 PF16671 Actin cross-linking domain DM194_18200 PF04717 Type VI secretion system, phage-baseplate injector DM194_18220 PF00069 Protein kinase domain DM194_18220 PF00211 Adenylate and Guanylate cyclase catalytic domain DM194_18240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_18240 PF03466 LysR substrate binding domain DM194_18245 PF03358 NADPH-dependent FMN reductase DM194_18250 PF13409 Glutathione S-transferase, N-terminal domain DM194_18285 PF01218 Coproporphyrinogen III oxidase DM194_18290 PF00588 SpoU rRNA Methylase family DM194_18295 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal DM194_18295 PF00355 Rieske [2Fe-2S] domain DM194_18300 PF00033 Cytochrome b/b6/petB DM194_18300 PF00032 Cytochrome b(C-terminal)/b6/petD DM194_18305 PF02167 Cytochrome C1 family DM194_18315 PF00072 Response regulator receiver domain DM194_18315 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DM194_18315 PF01627 Hpt domain DM194_18315 PF00512 His Kinase A (phospho-acceptor) domain DM194_18315 PF00672 HAMP domain DM194_18315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_18320 PF09856 Predicted transcriptional regulator (DUF2083) DM194_18320 PF01381 Helix-turn-helix DM194_18320 PF06114 IrrE N-terminal-like domain DM194_18325 PF01039 Carboxyl transferase domain DM194_18330 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DM194_18330 PF02785 Biotin carboxylase C-terminal domain DM194_18330 PF00289 Biotin carboxylase, N-terminal domain DM194_18345 PF01914 MarC family integral membrane protein DM194_18350 PF01654 Cytochrome bd terminal oxidase subunit I DM194_18355 PF02322 Cytochrome bd terminal oxidase subunit II DM194_18365 PF00111 2Fe-2S iron-sulfur cluster binding domain DM194_18365 PF01799 [2Fe-2S] binding domain DM194_18370 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DM194_18370 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DM194_18380 PF00231 ATP synthase DM194_18385 PF02874 ATP synthase alpha/beta family, beta-barrel domain DM194_18385 PF00306 ATP synthase alpha/beta chain, C terminal domain DM194_18385 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DM194_18390 PF00430 ATP synthase B/B' CF(0) DM194_18395 PF00137 ATP synthase subunit C DM194_18400 PF00119 ATP synthase A chain DM194_18415 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DM194_18420 PF02874 ATP synthase alpha/beta family, beta-barrel domain DM194_18420 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DM194_18430 PF00171 Aldehyde dehydrogenase family DM194_18435 PF00205 Thiamine pyrophosphate enzyme, central domain DM194_18435 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DM194_18435 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DM194_18440 PF03466 LysR substrate binding domain DM194_18440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_18445 PF00892 EamA-like transporter family DM194_18450 PF00196 Bacterial regulatory proteins, luxR family DM194_18460 PF00534 Glycosyl transferases group 1 DM194_18460 PF13439 Glycosyltransferase Family 4 DM194_18475 PF00534 Glycosyl transferases group 1 DM194_18475 PF13439 Glycosyltransferase Family 4 DM194_18490 PF00534 Glycosyl transferases group 1 DM194_18495 PF02706 Chain length determinant protein DM194_18495 PF13807 G-rich domain on putative tyrosine kinase DM194_18495 PF13614 AAA domain DM194_18505 PF00534 Glycosyl transferases group 1 DM194_18505 PF13439 Glycosyltransferase Family 4 DM194_18515 PF00356 Bacterial regulatory proteins, lacI family DM194_18520 PF02896 PEP-utilising enzyme, TIM barrel domain DM194_18520 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DM194_18520 PF00381 PTS HPr component phosphorylation site DM194_18520 PF00391 PEP-utilising enzyme, mobile domain DM194_18520 PF05524 PEP-utilising enzyme, N-terminal DM194_18525 PF00294 pfkB family carbohydrate kinase DM194_18530 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DM194_18540 PF00378 Enoyl-CoA hydratase/isomerase DM194_18540 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DM194_18540 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DM194_18545 PF00528 Binding-protein-dependent transport system inner membrane component DM194_18550 PF00005 ABC transporter DM194_18555 PF00528 Binding-protein-dependent transport system inner membrane component DM194_18560 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DM194_18565 PF04055 Radical SAM superfamily DM194_18565 PF13186 Iron-sulfur cluster-binding domain DM194_18570 PF05402 Coenzyme PQQ synthesis protein D (PqqD) DM194_18575 PF03070 TENA/THI-4/PQQC family DM194_18580 PF12706 Beta-lactamase superfamily domain DM194_18595 PF00196 Bacterial regulatory proteins, luxR family DM194_18595 PF00072 Response regulator receiver domain DM194_18605 PF01380 SIS domain DM194_18605 PF01418 Helix-turn-helix domain, rpiR family DM194_18610 PF00920 Dehydratase family DM194_18615 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain DM194_18615 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain DM194_18665 PF13817 IS66 C-terminal element DM194_18665 PF13007 Transposase C of IS166 homeodomain DM194_18665 PF13005 zinc-finger binding domain of transposase IS66 DM194_18665 PF03050 Transposase IS66 family DM194_18670 PF05717 IS66 Orf2 like protein DM194_18685 PF00512 His Kinase A (phospho-acceptor) domain DM194_18685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_18690 PF00072 Response regulator receiver domain DM194_18690 PF02954 Bacterial regulatory protein, Fis family DM194_18690 PF00158 Sigma-54 interaction domain DM194_18700 PF00528 Binding-protein-dependent transport system inner membrane component DM194_18705 PF00005 ABC transporter DM194_18705 PF08402 TOBE domain DM194_18710 PF13419 Haloacid dehalogenase-like hydrolase DM194_18725 PF01979 Amidohydrolase family DM194_18730 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DM194_18740 PF03480 Bacterial extracellular solute-binding protein, family 7 DM194_18755 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DM194_18765 PF03480 Bacterial extracellular solute-binding protein, family 7 DM194_18770 PF00392 Bacterial regulatory proteins, gntR family DM194_18770 PF07729 FCD domain DM194_18780 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DM194_18785 PF01593 Flavin containing amine oxidoreductase DM194_18790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_18790 PF03466 LysR substrate binding domain DM194_18795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_18795 PF03466 LysR substrate binding domain DM194_18805 PF00005 ABC transporter DM194_18805 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DM194_18810 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DM194_18810 PF00005 ABC transporter DM194_18820 PF00528 Binding-protein-dependent transport system inner membrane component DM194_18825 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DM194_18835 PF12833 Helix-turn-helix domain DM194_18835 PF12852 Cupin DM194_18840 PF07581 The GLUG motif DM194_18840 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) DM194_18865 PF01568 Molydopterin dinucleotide binding domain DM194_18865 PF18364 Molybdopterin oxidoreductase N-terminal domain DM194_18865 PF00384 Molybdopterin oxidoreductase DM194_18870 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DM194_18875 PF00072 Response regulator receiver domain DM194_18875 PF00486 Transcriptional regulatory protein, C terminal DM194_18880 PF00072 Response regulator receiver domain DM194_18880 PF01627 Hpt domain DM194_18880 PF00512 His Kinase A (phospho-acceptor) domain DM194_18880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_18880 PF00672 HAMP domain DM194_18890 PF00005 ABC transporter DM194_18895 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DM194_18895 PF00005 ABC transporter DM194_18900 PF12911 N-terminal TM domain of oligopeptide transport permease C DM194_18900 PF00528 Binding-protein-dependent transport system inner membrane component DM194_18905 PF00528 Binding-protein-dependent transport system inner membrane component DM194_18910 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DM194_18915 PF01402 Ribbon-helix-helix protein, copG family DM194_18915 PF08753 NikR C terminal nickel binding domain DM194_18920 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DM194_18930 PF00296 Luciferase-like monooxygenase DM194_18955 PF05995 Cysteine dioxygenase type I DM194_18960 PF00005 ABC transporter DM194_18965 PF00528 Binding-protein-dependent transport system inner membrane component DM194_18970 PF00881 Nitroreductase family DM194_18980 PF00155 Aminotransferase class I and II DM194_18980 PF00392 Bacterial regulatory proteins, gntR family DM194_18985 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DM194_18990 PF00005 ABC transporter DM194_18995 PF00528 Binding-protein-dependent transport system inner membrane component DM194_19005 PF00106 short chain dehydrogenase DM194_19010 PF00202 Aminotransferase class-III DM194_19015 PF01325 Iron dependent repressor, N-terminal DNA binding domain DM194_19015 PF02742 Iron dependent repressor, metal binding and dimerisation domain DM194_19020 PF01297 Zinc-uptake complex component A periplasmic DM194_19025 PF00005 ABC transporter DM194_19030 PF00950 ABC 3 transport family DM194_19035 PF00950 ABC 3 transport family DM194_19045 PF00384 Molybdopterin oxidoreductase DM194_19055 PF01339 CheB methylesterase DM194_19055 PF00072 Response regulator receiver domain DM194_19060 PF01339 CheB methylesterase DM194_19060 PF08448 PAS fold DM194_19060 PF03705 CheR methyltransferase, all-alpha domain DM194_19060 PF01739 CheR methyltransferase, SAM binding domain DM194_19065 PF09308 LuxQ, periplasmic DM194_19065 PF00512 His Kinase A (phospho-acceptor) domain DM194_19065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_19065 PF00072 Response regulator receiver domain DM194_19075 PF00196 Bacterial regulatory proteins, luxR family DM194_19075 PF00072 Response regulator receiver domain DM194_19090 PF01177 Asp/Glu/Hydantoin racemase DM194_19095 PF03976 Polyphosphate kinase 2 (PPK2) DM194_19100 PF11896 Domain of unknown function (DUF3416) DM194_19100 PF00128 Alpha amylase, catalytic domain DM194_19115 PF00005 ABC transporter DM194_19125 PF03707 Bacterial signalling protein N terminal repeat DM194_19125 PF00563 EAL domain DM194_19125 PF00990 Diguanylate cyclase, GGDEF domain DM194_19130 PF00990 Diguanylate cyclase, GGDEF domain DM194_19130 PF08448 PAS fold DM194_19130 PF00563 EAL domain DM194_19150 PF01370 NAD dependent epimerase/dehydratase family DM194_19160 PF01425 Amidase DM194_19175 PF04241 Protein of unknown function (DUF423) DM194_19190 PF01206 Sulfurtransferase TusA DM194_19195 PF00850 Histone deacetylase domain DM194_19200 PF02609 Exonuclease VII small subunit DM194_19205 PF00348 Polyprenyl synthetase DM194_19210 PF02779 Transketolase, pyrimidine binding domain DM194_19210 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DM194_19210 PF02780 Transketolase, C-terminal domain DM194_19220 PF01728 FtsJ-like methyltransferase DM194_19220 PF01479 S4 domain DM194_19230 PF02673 Bacitracin resistance protein BacA DM194_19240 PF01566 Natural resistance-associated macrophage protein DM194_19245 PF06965 Na+/H+ antiporter 1 DM194_19255 PF00141 Peroxidase DM194_19260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_19260 PF03466 LysR substrate binding domain DM194_19270 PF01794 Ferric reductase like transmembrane component DM194_19275 PF00174 Oxidoreductase molybdopterin binding domain DM194_19285 PF00512 His Kinase A (phospho-acceptor) domain DM194_19285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_19285 PF09308 LuxQ, periplasmic DM194_19285 PF00072 Response regulator receiver domain DM194_19290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_19290 PF00512 His Kinase A (phospho-acceptor) domain DM194_19290 PF08448 PAS fold DM194_19290 PF00072 Response regulator receiver domain DM194_19290 PF13188 PAS domain DM194_19315 PF02222 ATP-grasp domain DM194_19325 PF02803 Thiolase, C-terminal domain DM194_19325 PF00108 Thiolase, N-terminal domain DM194_19330 PF00501 AMP-binding enzyme DM194_19330 PF13193 AMP-binding enzyme C-terminal domain DM194_19335 PF02632 BioY family DM194_19340 PF02361 Cobalt transport protein DM194_19345 PF00005 ABC transporter DM194_19350 PF13649 Methyltransferase domain DM194_19355 PF00005 ABC transporter DM194_19365 PF00528 Binding-protein-dependent transport system inner membrane component DM194_19370 PF00497 Bacterial extracellular solute-binding proteins, family 3 DM194_19375 PF00392 Bacterial regulatory proteins, gntR family DM194_19375 PF07702 UTRA domain DM194_19380 PF04403 Paraquat-inducible protein A DM194_19385 PF02470 MlaD protein DM194_19400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_19400 PF03466 LysR substrate binding domain DM194_19405 PF00107 Zinc-binding dehydrogenase DM194_19405 PF08240 Alcohol dehydrogenase GroES-like domain DM194_19410 PF00756 Putative esterase DM194_19430 PF07731 Multicopper oxidase DM194_19430 PF07732 Multicopper oxidase DM194_19440 PF01053 Cys/Met metabolism PLP-dependent enzyme DM194_19445 PF05145 Transition state regulatory protein AbrB DM194_19460 PF01261 Xylose isomerase-like TIM barrel DM194_19470 PF13193 AMP-binding enzyme C-terminal domain DM194_19470 PF00501 AMP-binding enzyme DM194_19475 PF06276 Ferric iron reductase FhuF-like transporter DM194_19475 PF04183 IucA / IucC family DM194_19480 PF06276 Ferric iron reductase FhuF-like transporter DM194_19480 PF04183 IucA / IucC family DM194_19490 PF07715 TonB-dependent Receptor Plug Domain DM194_19490 PF00593 TonB dependent receptor DM194_19500 PF04542 Sigma-70 region 2 DM194_19500 PF08281 Sigma-70, region 4 DM194_19505 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DM194_19505 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DM194_19515 PF13407 Periplasmic binding protein domain DM194_19520 PF02653 Branched-chain amino acid transport system / permease component DM194_19525 PF00005 ABC transporter DM194_19530 PF00480 ROK family DM194_19535 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DM194_19535 PF00381 PTS HPr component phosphorylation site DM194_19535 PF02896 PEP-utilising enzyme, TIM barrel domain DM194_19535 PF05524 PEP-utilising enzyme, N-terminal DM194_19535 PF00391 PEP-utilising enzyme, mobile domain DM194_19540 PF00367 phosphotransferase system, EIIB DM194_19540 PF02378 Phosphotransferase system, EIIC DM194_19545 PF01380 SIS domain DM194_19550 PF01979 Amidohydrolase family DM194_19555 PF13419 Haloacid dehalogenase-like hydrolase DM194_19565 PF00005 ABC transporter DM194_19565 PF08402 TOBE domain DM194_19575 PF00528 Binding-protein-dependent transport system inner membrane component DM194_19580 PF00528 Binding-protein-dependent transport system inner membrane component DM194_19585 PF01177 Asp/Glu/Hydantoin racemase DM194_19595 PF01425 Amidase DM194_19605 PF01037 Lrp/AsnC ligand binding domain DM194_19610 PF00291 Pyridoxal-phosphate dependent enzyme DM194_19615 PF01261 Xylose isomerase-like TIM barrel DM194_19620 PF01566 Natural resistance-associated macrophage protein DM194_19625 PF07690 Major Facilitator Superfamily DM194_19630 PF00561 alpha/beta hydrolase fold DM194_19640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_19640 PF17200 Single Cache domain 2 DM194_19640 PF00672 HAMP domain DM194_19645 PF02615 Malate/L-lactate dehydrogenase DM194_19660 PF04545 Sigma-70, region 4 DM194_19660 PF00140 Sigma-70 factor, region 1.2 DM194_19660 PF04542 Sigma-70 region 2 DM194_19665 PF00106 short chain dehydrogenase DM194_19675 PF01209 ubiE/COQ5 methyltransferase family DM194_19685 PF04820 Tryptophan halogenase DM194_19715 PF02801 Beta-ketoacyl synthase, C-terminal domain DM194_19715 PF00109 Beta-ketoacyl synthase, N-terminal domain DM194_19720 PF00891 O-methyltransferase domain DM194_19745 PF07977 FabA-like domain DM194_19750 PF00501 AMP-binding enzyme DM194_19750 PF13193 AMP-binding enzyme C-terminal domain DM194_19765 PF00155 Aminotransferase class I and II DM194_19765 PF00392 Bacterial regulatory proteins, gntR family DM194_19770 PF13746 4Fe-4S dicluster domain DM194_19770 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase DM194_19770 PF12801 4Fe-4S binding domain DM194_19785 PF00497 Bacterial extracellular solute-binding proteins, family 3 DM194_19800 PF02423 Ornithine cyclodeaminase/mu-crystallin family DM194_19805 PF00672 HAMP domain DM194_19805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_19805 PF17202 Single cache domain 3 DM194_19810 PF02028 BCCT, betaine/carnitine/choline family transporter DM194_19815 PF00005 ABC transporter DM194_19815 PF00664 ABC transporter transmembrane region DM194_19820 PF01032 FecCD transport family DM194_19830 PF00005 ABC transporter DM194_19835 PF07715 TonB-dependent Receptor Plug Domain DM194_19835 PF00593 TonB dependent receptor DM194_19850 PF08241 Methyltransferase domain DM194_19855 PF00211 Adenylate and Guanylate cyclase catalytic domain DM194_19860 PF01565 FAD binding domain DM194_19860 PF02913 FAD linked oxidases, C-terminal domain DM194_19865 PF00005 ABC transporter DM194_19870 PF00005 ABC transporter DM194_19870 PF12399 Branched-chain amino acid ATP-binding cassette transporter DM194_19875 PF11862 Domain of unknown function (DUF3382) DM194_19875 PF02653 Branched-chain amino acid transport system / permease component DM194_19880 PF02653 Branched-chain amino acid transport system / permease component DM194_19895 PF00694 Aconitase C-terminal domain DM194_19900 PF00330 Aconitase family (aconitate hydratase) DM194_19905 PF02913 FAD linked oxidases, C-terminal domain DM194_19905 PF01565 FAD binding domain DM194_19910 PF00753 Metallo-beta-lactamase superfamily DM194_19915 PF01614 Bacterial transcriptional regulator DM194_19915 PF09339 IclR helix-turn-helix domain DM194_19920 PF00561 alpha/beta hydrolase fold DM194_19925 PF13193 AMP-binding enzyme C-terminal domain DM194_19925 PF00501 AMP-binding enzyme DM194_19930 PF01070 FMN-dependent dehydrogenase DM194_19940 PF13640 2OG-Fe(II) oxygenase superfamily DM194_19940 PF18331 PKHD-type hydroxylase C-terminal domain DM194_19945 PF00593 TonB dependent receptor DM194_19945 PF07715 TonB-dependent Receptor Plug Domain DM194_19950 PF00591 Glycosyl transferase family, a/b domain DM194_19950 PF02885 Glycosyl transferase family, helical bundle domain DM194_19955 PF00892 EamA-like transporter family DM194_19960 PF01497 Periplasmic binding protein DM194_19965 PF01032 FecCD transport family DM194_19970 PF01032 FecCD transport family DM194_19975 PF00005 ABC transporter DM194_20010 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DM194_20010 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DM194_20015 PF00871 Acetokinase family DM194_20020 PF01515 Phosphate acetyl/butaryl transferase DM194_20025 PF01226 Formate/nitrite transporter DM194_20030 PF00005 ABC transporter DM194_20035 PF01061 ABC-2 type transporter DM194_20040 PF00132 Bacterial transferase hexapeptide (six repeats) DM194_20050 PF00501 AMP-binding enzyme DM194_20050 PF13193 AMP-binding enzyme C-terminal domain DM194_20055 PF00989 PAS fold DM194_20055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_20055 PF00512 His Kinase A (phospho-acceptor) domain DM194_20065 PF06745 KaiC DM194_20070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_20070 PF00512 His Kinase A (phospho-acceptor) domain DM194_20070 PF00072 Response regulator receiver domain DM194_20070 PF13188 PAS domain DM194_20070 PF08448 PAS fold DM194_20075 PF07690 Major Facilitator Superfamily DM194_20080 PF00857 Isochorismatase family DM194_20085 PF17645 Arylmalonate decarboxylase DM194_20090 PF00561 alpha/beta hydrolase fold DM194_20095 PF01494 FAD binding domain DM194_20105 PF12802 MarR family DM194_20110 PF00111 2Fe-2S iron-sulfur cluster binding domain DM194_20110 PF01799 [2Fe-2S] binding domain DM194_20115 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DM194_20115 PF00034 Cytochrome c DM194_20115 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DM194_20120 PF00392 Bacterial regulatory proteins, gntR family DM194_20120 PF00155 Aminotransferase class I and II DM194_20125 PF00892 EamA-like transporter family DM194_20130 PF01590 GAF domain DM194_20130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_20130 PF00512 His Kinase A (phospho-acceptor) domain DM194_20130 PF08446 PAS fold DM194_20130 PF00360 Phytochrome region DM194_20135 PF00072 Response regulator receiver domain DM194_20140 PF13426 PAS domain DM194_20140 PF08447 PAS fold DM194_20140 PF07536 HWE histidine kinase DM194_20145 PF00072 Response regulator receiver domain DM194_20150 PF04314 Copper chaperone PCu(A)C DM194_20160 PF00005 ABC transporter DM194_20185 PF13360 PQQ-like domain DM194_20185 PF01011 PQQ enzyme repeat DM194_20215 PF00005 ABC transporter DM194_20225 PF12833 Helix-turn-helix domain DM194_20225 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DM194_20225 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DM194_20225 PF02805 Metal binding domain of Ada DM194_20230 PF00271 Helicase conserved C-terminal domain DM194_20230 PF02559 CarD-like/TRCF domain DM194_20230 PF17757 UvrB interaction domain DM194_20230 PF00270 DEAD/DEAH box helicase DM194_20230 PF03461 TRCF domain DM194_20260 PF08241 Methyltransferase domain DM194_20275 PF00529 HlyD membrane-fusion protein of T1SS DM194_20275 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DM194_20280 PF00005 ABC transporter DM194_20280 PF00664 ABC transporter transmembrane region DM194_20285 PF16363 GDP-mannose 4,6 dehydratase DM194_20290 PF12802 MarR family DM194_20300 PF03861 ANTAR domain DM194_20300 PF08376 Nitrate and nitrite sensing DM194_20305 PF01070 FMN-dependent dehydrogenase DM194_20310 PF00512 His Kinase A (phospho-acceptor) domain DM194_20310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_20310 PF08448 PAS fold DM194_20310 PF00072 Response regulator receiver domain DM194_20310 PF13188 PAS domain DM194_20325 PF00171 Aldehyde dehydrogenase family DM194_20325 PF01575 MaoC like domain DM194_20335 PF03705 CheR methyltransferase, all-alpha domain DM194_20335 PF01739 CheR methyltransferase, SAM binding domain DM194_20345 PF17200 Single Cache domain 2 DM194_20345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_20345 PF00672 HAMP domain DM194_20355 PF01627 Hpt domain DM194_20355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_20355 PF01584 CheW-like domain DM194_20355 PF00072 Response regulator receiver domain DM194_20360 PF01339 CheB methylesterase DM194_20360 PF00072 Response regulator receiver domain DM194_20365 PF00072 Response regulator receiver domain DM194_20365 PF00486 Transcriptional regulatory protein, C terminal DM194_20370 PF00072 Response regulator receiver domain DM194_20370 PF00512 His Kinase A (phospho-acceptor) domain DM194_20370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_20370 PF09308 LuxQ, periplasmic DM194_20380 PF05343 M42 glutamyl aminopeptidase DM194_20390 PF00733 Asparagine synthase DM194_20390 PF13537 Glutamine amidotransferase domain DM194_20395 PF07885 Ion channel DM194_20395 PF00027 Cyclic nucleotide-binding domain DM194_20405 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DM194_20405 PF00205 Thiamine pyrophosphate enzyme, central domain DM194_20405 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DM194_20415 PF04828 Glutathione-dependent formaldehyde-activating enzyme DM194_20420 PF00111 2Fe-2S iron-sulfur cluster binding domain DM194_20420 PF01799 [2Fe-2S] binding domain DM194_20420 PF10518 TAT (twin-arginine translocation) pathway signal sequence DM194_20425 PF03450 CO dehydrogenase flavoprotein C-terminal domain DM194_20425 PF00941 FAD binding domain in molybdopterin dehydrogenase DM194_20430 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DM194_20430 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DM194_20435 PF00072 Response regulator receiver domain DM194_20440 PF18415 Histidine kinase receptor ArcB trans-membrane domain DM194_20440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_20440 PF00989 PAS fold DM194_20440 PF00512 His Kinase A (phospho-acceptor) domain DM194_20440 PF01627 Hpt domain DM194_20440 PF00072 Response regulator receiver domain DM194_20455 PF03471 Transporter associated domain DM194_20455 PF00571 CBS domain DM194_20455 PF01595 Cyclin M transmembrane N-terminal domain DM194_20470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_20470 PF01627 Hpt domain DM194_20470 PF00512 His Kinase A (phospho-acceptor) domain DM194_20470 PF00072 Response regulator receiver domain DM194_20480 PF01381 Helix-turn-helix DM194_20485 PF08345 Flagellar M-ring protein C-terminal DM194_20485 PF01514 Secretory protein of YscJ/FliF family DM194_20495 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DM194_20500 PF01618 MotA/TolQ/ExbB proton channel family DM194_20505 PF02954 Bacterial regulatory protein, Fis family DM194_20505 PF00158 Sigma-54 interaction domain DM194_20510 PF00771 FHIPEP family DM194_20520 PF10609 NUBPL iron-transfer P-loop NTPase DM194_20530 PF14489 QueF-like protein DM194_20535 PF03334 Na+/H+ antiporter subunit DM194_20540 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) DM194_20545 PF01899 Na+/H+ ion antiporter subunit DM194_20550 PF00361 Proton-conducting membrane transporter DM194_20555 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DM194_20560 PF13244 Domain of unknown function (DUF4040) DM194_20560 PF00361 Proton-conducting membrane transporter DM194_20560 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DM194_20560 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter DM194_20565 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DM194_20575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_20575 PF00512 His Kinase A (phospho-acceptor) domain DM194_20575 PF00989 PAS fold DM194_20580 PF00072 Response regulator receiver domain DM194_20580 PF00196 Bacterial regulatory proteins, luxR family DM194_20600 PF08240 Alcohol dehydrogenase GroES-like domain DM194_20600 PF00107 Zinc-binding dehydrogenase DM194_20605 PF01112 Asparaginase DM194_20610 PF04951 D-aminopeptidase DM194_20615 PF03576 Peptidase family S58 DM194_20620 PF12911 N-terminal TM domain of oligopeptide transport permease C DM194_20620 PF00528 Binding-protein-dependent transport system inner membrane component DM194_20625 PF00528 Binding-protein-dependent transport system inner membrane component DM194_20630 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DM194_20635 PF00005 ABC transporter DM194_20635 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DM194_20640 PF01063 Amino-transferase class IV DM194_20650 PF14842 FliG N-terminal domain DM194_20650 PF01706 FliG C-terminal domain DM194_20650 PF14841 FliG middle domain DM194_20665 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DM194_20670 PF02682 Carboxyltransferase domain, subdomain C and D DM194_20675 PF02626 Carboxyltransferase domain, subdomain A and B DM194_20680 PF08402 TOBE domain DM194_20680 PF00005 ABC transporter DM194_20685 PF13416 Bacterial extracellular solute-binding protein DM194_20690 PF00528 Binding-protein-dependent transport system inner membrane component DM194_20695 PF00528 Binding-protein-dependent transport system inner membrane component DM194_20710 PF01425 Amidase DM194_20715 PF07729 FCD domain DM194_20715 PF00392 Bacterial regulatory proteins, gntR family DM194_20720 PF00990 Diguanylate cyclase, GGDEF domain DM194_20720 PF08448 PAS fold DM194_20725 PF00563 EAL domain DM194_20725 PF03707 Bacterial signalling protein N terminal repeat DM194_20725 PF00990 Diguanylate cyclase, GGDEF domain DM194_20730 PF01979 Amidohydrolase family DM194_20740 PF00392 Bacterial regulatory proteins, gntR family DM194_20740 PF07729 FCD domain DM194_20745 PF05161 MOFRL family DM194_20745 PF13660 Domain of unknown function (DUF4147) DM194_20750 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DM194_20750 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DM194_20755 PF00456 Transketolase, thiamine diphosphate binding domain DM194_20755 PF02780 Transketolase, C-terminal domain DM194_20755 PF02779 Transketolase, pyrimidine binding domain DM194_20765 PF03466 LysR substrate binding domain DM194_20765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_20775 PF03301 Tryptophan 2,3-dioxygenase DM194_20780 PF00266 Aminotransferase class-V DM194_20785 PF12833 Helix-turn-helix domain DM194_20795 PF10503 Esterase PHB depolymerase DM194_20830 PF01970 Tripartite tricarboxylate transporter TctA family DM194_20840 PF00072 Response regulator receiver domain DM194_20840 PF00486 Transcriptional regulatory protein, C terminal DM194_20845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_20845 PF08521 Two-component sensor kinase N-terminal DM194_20845 PF00512 His Kinase A (phospho-acceptor) domain DM194_20850 PF04397 LytTr DNA-binding domain DM194_20850 PF00072 Response regulator receiver domain DM194_20855 PF07694 5TMR of 5TMR-LYT DM194_20855 PF06580 Histidine kinase DM194_20865 PF03313 Serine dehydratase alpha chain DM194_20865 PF03315 Serine dehydratase beta chain DM194_20885 PF00528 Binding-protein-dependent transport system inner membrane component DM194_20890 PF00005 ABC transporter DM194_20925 PF00027 Cyclic nucleotide-binding domain DM194_20925 PF13545 Crp-like helix-turn-helix domain DM194_20935 PF03781 Sulfatase-modifying factor enzyme 1 DM194_20940 PF00211 Adenylate and Guanylate cyclase catalytic domain DM194_20990 PF08281 Sigma-70, region 4 DM194_20990 PF04542 Sigma-70 region 2 DM194_21005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_21005 PF03466 LysR substrate binding domain DM194_21015 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DM194_21020 PF00528 Binding-protein-dependent transport system inner membrane component DM194_21025 PF00528 Binding-protein-dependent transport system inner membrane component DM194_21025 PF12911 N-terminal TM domain of oligopeptide transport permease C DM194_21030 PF00005 ABC transporter DM194_21030 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DM194_21040 PF00491 Arginase family DM194_21050 PF07687 Peptidase dimerisation domain DM194_21050 PF01546 Peptidase family M20/M25/M40 DM194_21065 PF07859 alpha/beta hydrolase fold DM194_21080 PF03601 Conserved hypothetical protein 698 DM194_21090 PF12706 Beta-lactamase superfamily domain DM194_21095 PF00248 Aldo/keto reductase family DM194_21110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_21110 PF00672 HAMP domain DM194_21110 PF16591 Helical bimodular sensor domain DM194_21115 PF03741 Integral membrane protein TerC family DM194_21120 PF01653 NAD-dependent DNA ligase adenylation domain DM194_21120 PF03120 NAD-dependent DNA ligase OB-fold domain DM194_21120 PF12826 Helix-hairpin-helix motif DM194_21120 PF00533 BRCA1 C Terminus (BRCT) domain DM194_21130 PF01541 GIY-YIG catalytic domain DM194_21130 PF00929 Exonuclease DM194_21135 PF02913 FAD linked oxidases, C-terminal domain DM194_21135 PF01565 FAD binding domain DM194_21145 PF00005 ABC transporter DM194_21145 PF08402 TOBE domain DM194_21150 PF00528 Binding-protein-dependent transport system inner membrane component DM194_21155 PF00701 Dihydrodipicolinate synthetase family DM194_21165 PF01070 FMN-dependent dehydrogenase DM194_21170 PF00106 short chain dehydrogenase DM194_21175 PF00528 Binding-protein-dependent transport system inner membrane component DM194_21180 PF00528 Binding-protein-dependent transport system inner membrane component DM194_21185 PF08402 TOBE domain DM194_21185 PF00005 ABC transporter DM194_21195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_21195 PF03466 LysR substrate binding domain DM194_21200 PF01266 FAD dependent oxidoreductase DM194_21210 PF04324 BFD-like [2Fe-2S] binding domain DM194_21210 PF07992 Pyridine nucleotide-disulphide oxidoreductase DM194_21215 PF01266 FAD dependent oxidoreductase DM194_21220 PF01042 Endoribonuclease L-PSP DM194_21225 PF00497 Bacterial extracellular solute-binding proteins, family 3 DM194_21230 PF01042 Endoribonuclease L-PSP DM194_21235 PF00465 Iron-containing alcohol dehydrogenase DM194_21235 PF00171 Aldehyde dehydrogenase family DM194_21240 PF00027 Cyclic nucleotide-binding domain DM194_21240 PF13545 Crp-like helix-turn-helix domain DM194_21245 PF00072 Response regulator receiver domain DM194_21245 PF00196 Bacterial regulatory proteins, luxR family DM194_21250 PF00196 Bacterial regulatory proteins, luxR family DM194_21250 PF00072 Response regulator receiver domain DM194_21255 PF00512 His Kinase A (phospho-acceptor) domain DM194_21255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_21255 PF00989 PAS fold DM194_21270 PF03354 Phage Terminase DM194_21280 PF12464 Maltose acetyltransferase DM194_21280 PF14602 Hexapeptide repeat of succinyl-transferase DM194_21295 PF00005 ABC transporter DM194_21300 PF02653 Branched-chain amino acid transport system / permease component DM194_21305 PF13407 Periplasmic binding protein domain DM194_21315 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DM194_21315 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DM194_21320 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DM194_21320 PF00356 Bacterial regulatory proteins, lacI family DM194_21330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_21330 PF03459 TOBE domain DM194_21340 PF04264 YceI-like domain DM194_21345 PF13409 Glutathione S-transferase, N-terminal domain DM194_21360 PF00248 Aldo/keto reductase family DM194_21365 PF02613 Nitrate reductase delta subunit DM194_21370 PF04976 DMSO reductase anchor subunit (DmsC) DM194_21375 PF13247 4Fe-4S dicluster domain DM194_21375 PF12800 4Fe-4S binding domain DM194_21380 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DM194_21380 PF00384 Molybdopterin oxidoreductase DM194_21380 PF01568 Molydopterin dinucleotide binding domain DM194_21385 PF02515 CoA-transferase family III DM194_21395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_21395 PF03466 LysR substrate binding domain DM194_21400 PF02770 Acyl-CoA dehydrogenase, middle domain DM194_21400 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DM194_21400 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DM194_21405 PF02779 Transketolase, pyrimidine binding domain DM194_21405 PF16870 2-oxoglutarate dehydrogenase C-terminal DM194_21405 PF00676 Dehydrogenase E1 component DM194_21405 PF16078 2-oxoglutarate dehydrogenase N-terminus DM194_21410 PF03480 Bacterial extracellular solute-binding protein, family 7 DM194_21420 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DM194_21425 PF02558 Ketopantoate reductase PanE/ApbA DM194_21425 PF08546 Ketopantoate reductase PanE/ApbA C terminal DM194_21430 PF00171 Aldehyde dehydrogenase family DM194_21435 PF02913 FAD linked oxidases, C-terminal domain DM194_21435 PF01565 FAD binding domain DM194_21445 PF03328 HpcH/HpaI aldolase/citrate lyase family DM194_21450 PF01012 Electron transfer flavoprotein domain DM194_21455 PF00766 Electron transfer flavoprotein FAD-binding domain DM194_21455 PF01012 Electron transfer flavoprotein domain DM194_21460 PF06796 Periplasmic nitrate reductase protein NapE DM194_21470 PF03927 NapD protein DM194_21475 PF01568 Molydopterin dinucleotide binding domain DM194_21475 PF00384 Molybdopterin oxidoreductase DM194_21475 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DM194_21480 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) DM194_21485 PF03264 NapC/NirT cytochrome c family, N-terminal region DM194_21490 PF02195 ParB-like nuclease domain DM194_21490 PF17762 HTH domain found in ParB protein DM194_21495 PF13614 AAA domain DM194_21505 PF00313 'Cold-shock' DNA-binding domain DM194_21510 PF13614 AAA domain DM194_21555 PF03050 Transposase IS66 family DM194_21555 PF13005 zinc-finger binding domain of transposase IS66 DM194_21555 PF13007 Transposase C of IS166 homeodomain DM194_21555 PF13817 IS66 C-terminal element DM194_21560 PF05717 IS66 Orf2 like protein DM194_21585 PF01548 Transposase DM194_21585 PF02371 Transposase IS116/IS110/IS902 family DM194_21600 PF01609 Transposase DDE domain DM194_21620 PF02979 Nitrile hydratase, alpha chain DM194_21625 PF02211 Nitrile hydratase beta subunit DM194_21630 PF01925 Sulfite exporter TauE/SafE DM194_21650 PF10951 Protein of unknown function (DUF2776) DM194_21660 PF00072 Response regulator receiver domain DM194_21660 PF00196 Bacterial regulatory proteins, luxR family DM194_21665 PF07690 Major Facilitator Superfamily DM194_21670 PF13533 Biotin-lipoyl like DM194_21675 PF00384 Molybdopterin oxidoreductase DM194_21675 PF01568 Molydopterin dinucleotide binding domain DM194_21675 PF14710 Respiratory nitrate reductase alpha N-terminal DM194_21680 PF13247 4Fe-4S dicluster domain DM194_21680 PF14711 Respiratory nitrate reductase beta C-terminal DM194_21685 PF02613 Nitrate reductase delta subunit DM194_21690 PF02665 Nitrate reductase gamma subunit DM194_21695 PF09312 SurA N-terminal domain DM194_21695 PF00639 PPIC-type PPIASE domain DM194_21700 PF07690 Major Facilitator Superfamily DM194_21705 PF07715 TonB-dependent Receptor Plug Domain DM194_21705 PF00593 TonB dependent receptor DM194_21720 PF01032 FecCD transport family DM194_21725 PF00005 ABC transporter DM194_21785 PF14760 Rnk N-terminus DM194_21785 PF01272 Transcription elongation factor, GreA/GreB, C-term DM194_21790 PF01979 Amidohydrolase family DM194_21800 PF03069 Acetamidase/Formamidase family DM194_21805 PF01979 Amidohydrolase family DM194_21810 PF09084 NMT1/THI5 like DM194_21820 PF00005 ABC transporter DM194_21835 PF03466 LysR substrate binding domain DM194_21835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_21840 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DM194_21840 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DM194_21865 PF00857 Isochorismatase family DM194_21875 PF00561 alpha/beta hydrolase fold DM194_21880 PF17645 Arylmalonate decarboxylase DM194_21885 PF01494 FAD binding domain DM194_21890 PF00005 ABC transporter DM194_21895 PF12399 Branched-chain amino acid ATP-binding cassette transporter DM194_21895 PF00005 ABC transporter DM194_21900 PF02653 Branched-chain amino acid transport system / permease component DM194_21900 PF11862 Domain of unknown function (DUF3382) DM194_21905 PF02653 Branched-chain amino acid transport system / permease component DM194_21910 PF13458 Periplasmic binding protein DM194_21915 PF00270 DEAD/DEAH box helicase DM194_21915 PF00271 Helicase conserved C-terminal domain DM194_21925 PF00313 'Cold-shock' DNA-binding domain DM194_21935 PF02080 TrkA-C domain DM194_21935 PF03600 Citrate transporter DM194_21940 PF13419 Haloacid dehalogenase-like hydrolase DM194_21950 PF01266 FAD dependent oxidoreductase DM194_21955 PF01042 Endoribonuclease L-PSP DM194_21960 PF13458 Periplasmic binding protein DM194_21975 PF12399 Branched-chain amino acid ATP-binding cassette transporter DM194_21975 PF00005 ABC transporter DM194_21980 PF00005 ABC transporter DM194_21985 PF07729 FCD domain DM194_21985 PF00392 Bacterial regulatory proteins, gntR family DM194_22010 PF02371 Transposase IS116/IS110/IS902 family DM194_22010 PF01548 Transposase DM194_22025 PF08479 POTRA domain, ShlB-type DM194_22025 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB DM194_22030 PF05860 haemagglutination activity domain DM194_22045 PF01979 Amidohydrolase family DM194_22060 PF02653 Branched-chain amino acid transport system / permease component DM194_22065 PF02653 Branched-chain amino acid transport system / permease component DM194_22065 PF11862 Domain of unknown function (DUF3382) DM194_22070 PF12399 Branched-chain amino acid ATP-binding cassette transporter DM194_22070 PF00005 ABC transporter DM194_22075 PF00005 ABC transporter DM194_22080 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DM194_22080 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DM194_22085 PF03450 CO dehydrogenase flavoprotein C-terminal domain DM194_22085 PF00941 FAD binding domain in molybdopterin dehydrogenase DM194_22095 PF01425 Amidase DM194_22120 PF01435 Peptidase family M48 DM194_22125 PF00328 Histidine phosphatase superfamily (branch 2) DM194_22130 PF00977 Histidine biosynthesis protein DM194_22140 PF09335 SNARE associated Golgi protein DM194_22165 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DM194_22165 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DM194_22170 PF02615 Malate/L-lactate dehydrogenase DM194_22175 PF00291 Pyridoxal-phosphate dependent enzyme DM194_22180 PF00528 Binding-protein-dependent transport system inner membrane component DM194_22185 PF00005 ABC transporter DM194_22200 PF00072 Response regulator receiver domain DM194_22205 PF00512 His Kinase A (phospho-acceptor) domain DM194_22205 PF01627 Hpt domain DM194_22205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_22205 PF00672 HAMP domain DM194_22205 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DM194_22205 PF00072 Response regulator receiver domain DM194_22225 PF00072 Response regulator receiver domain DM194_22230 PF00158 Sigma-54 interaction domain DM194_22230 PF02954 Bacterial regulatory protein, Fis family DM194_22230 PF00072 Response regulator receiver domain DM194_22235 PF00196 Bacterial regulatory proteins, luxR family DM194_22235 PF00072 Response regulator receiver domain DM194_22245 PF00672 HAMP domain DM194_22245 PF17149 Periplasmic sensor domain found in signal transduction proteins DM194_22245 PF00512 His Kinase A (phospho-acceptor) domain DM194_22245 PF01627 Hpt domain DM194_22245 PF00072 Response regulator receiver domain DM194_22245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_22250 PF12973 ChrR Cupin-like domain DM194_22255 PF04545 Sigma-70, region 4 DM194_22255 PF04542 Sigma-70 region 2 DM194_22260 PF01593 Flavin containing amine oxidoreductase DM194_22285 PF00106 short chain dehydrogenase DM194_22295 PF01618 MotA/TolQ/ExbB proton channel family DM194_22300 PF02472 Biopolymer transport protein ExbD/TolR DM194_22305 PF03544 Gram-negative bacterial TonB protein C-terminal DM194_22360 PF01594 AI-2E family transporter DM194_22365 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DM194_22370 PF01037 Lrp/AsnC ligand binding domain DM194_22375 PF00534 Glycosyl transferases group 1 DM194_22375 PF13439 Glycosyltransferase Family 4 DM194_22390 PF01370 NAD dependent epimerase/dehydratase family DM194_22395 PF01370 NAD dependent epimerase/dehydratase family DM194_22400 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DM194_22400 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DM194_22400 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DM194_22410 PF02706 Chain length determinant protein DM194_22410 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DM194_22410 PF13807 G-rich domain on putative tyrosine kinase DM194_22420 PF00072 Response regulator receiver domain DM194_22425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_22425 PF00512 His Kinase A (phospho-acceptor) domain DM194_22430 PF00005 ABC transporter DM194_22440 PF03070 TENA/THI-4/PQQC family DM194_22450 PF02659 Putative manganese efflux pump DM194_22455 PF01979 Amidohydrolase family DM194_22475 PF00072 Response regulator receiver domain DM194_22485 PF06224 Winged helix DNA-binding domain DM194_22490 PF01037 Lrp/AsnC ligand binding domain DM194_22495 PF09335 SNARE associated Golgi protein DM194_22515 PF00860 Permease family DM194_22525 PF00232 Glycosyl hydrolase family 1 DM194_22530 PF05962 HutD DM194_22540 PF03631 Virulence factor BrkB DM194_22550 PF00374 Nickel-dependent hydrogenase DM194_22555 PF02492 CobW/HypB/UreG, nucleotide-binding domain DM194_22560 PF01455 HupF/HypC family DM194_22565 PF00586 AIR synthase related protein, N-terminal domain DM194_22565 PF02769 AIR synthase related protein, C-terminal domain DM194_22570 PF02397 Bacterial sugar transferase DM194_22575 PF03572 Peptidase family S41 DM194_22575 PF13180 PDZ domain DM194_22585 PF01259 SAICAR synthetase DM194_22590 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DM194_22590 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DM194_22590 PF01842 ACT domain DM194_22595 PF01569 PAP2 superfamily DM194_22605 PF02423 Ornithine cyclodeaminase/mu-crystallin family DM194_22615 PF01555 DNA methylase DM194_22615 PF18755 Restriction Enzyme Adenine Methylase Associated DM194_22620 PF01351 Ribonuclease HII DM194_22625 PF02810 SEC-C motif DM194_22630 PF00313 'Cold-shock' DNA-binding domain DM194_22635 PF00005 ABC transporter DM194_22635 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DM194_22650 PF13091 PLD-like domain DM194_22665 PF05985 Ethanolamine ammonia-lyase light chain (EutC) DM194_22670 PF06751 Ethanolamine ammonia lyase large subunit (EutB) DM194_22690 PF01810 LysE type translocator DM194_22700 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain DM194_22700 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain DM194_22710 PF00730 HhH-GPD superfamily base excision DNA repair protein DM194_22710 PF00633 Helix-hairpin-helix motif DM194_22710 PF10576 Iron-sulfur binding domain of endonuclease III DM194_22715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_22715 PF00512 His Kinase A (phospho-acceptor) domain DM194_22715 PF00989 PAS fold DM194_22730 PF00171 Aldehyde dehydrogenase family DM194_22735 PF01292 Prokaryotic cytochrome b561 DM194_22740 PF13247 4Fe-4S dicluster domain DM194_22745 PF01568 Molydopterin dinucleotide binding domain DM194_22745 PF00384 Molybdopterin oxidoreductase DM194_22745 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DM194_22760 PF02445 Quinolinate synthetase A protein DM194_22765 PF00890 FAD binding domain DM194_22765 PF02910 Fumarate reductase flavoprotein C-term DM194_22770 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain DM194_22770 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain DM194_22785 PF13378 Enolase C-terminal domain-like DM194_22790 PF03466 LysR substrate binding domain DM194_22790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_22825 PF18693 TRAM domain DM194_22825 PF04055 Radical SAM superfamily DM194_22825 PF00919 Uncharacterized protein family UPF0004 DM194_22840 PF02566 OsmC-like protein DM194_22850 PF00672 HAMP domain DM194_22850 PF00512 His Kinase A (phospho-acceptor) domain DM194_22850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_22865 PF05138 Phenylacetic acid catabolic protein DM194_22870 PF06243 Phenylacetic acid degradation B DM194_22875 PF05138 Phenylacetic acid catabolic protein DM194_22880 PF01883 Iron-sulfur cluster assembly protein DM194_22885 PF00175 Oxidoreductase NAD-binding domain DM194_22885 PF00970 Oxidoreductase FAD-binding domain DM194_22885 PF00111 2Fe-2S iron-sulfur cluster binding domain DM194_22890 PF00171 Aldehyde dehydrogenase family DM194_22895 PF00378 Enoyl-CoA hydratase/isomerase DM194_22900 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DM194_22900 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DM194_22900 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain DM194_22905 PF03061 Thioesterase superfamily DM194_22910 PF00108 Thiolase, N-terminal domain DM194_22910 PF02803 Thiolase, C-terminal domain DM194_22925 PF00005 ABC transporter DM194_22930 PF00528 Binding-protein-dependent transport system inner membrane component DM194_22935 PF00528 Binding-protein-dependent transport system inner membrane component DM194_22945 PF00392 Bacterial regulatory proteins, gntR family DM194_22945 PF07729 FCD domain DM194_22950 PF02142 MGS-like domain DM194_22955 PF04962 KduI/IolB family DM194_22965 PF07883 Cupin domain DM194_22975 PF02614 Glucuronate isomerase DM194_22980 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus DM194_22980 PF08666 SAF domain DM194_22990 PF00294 pfkB family carbohydrate kinase DM194_22995 PF00440 Bacterial regulatory proteins, tetR family DM194_23005 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DM194_23005 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DM194_23010 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DM194_23010 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DM194_23010 PF07992 Pyridine nucleotide-disulphide oxidoreductase DM194_23015 PF01180 Dihydroorotate dehydrogenase DM194_23020 PF07687 Peptidase dimerisation domain DM194_23020 PF01546 Peptidase family M20/M25/M40 DM194_23025 PF08362 YcdC-like protein, C-terminal region DM194_23025 PF00440 Bacterial regulatory proteins, tetR family DM194_23030 PF01979 Amidohydrolase family DM194_23040 PF01627 Hpt domain DM194_23040 PF02895 Signal transducing histidine kinase, homodimeric domain DM194_23040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_23040 PF01584 CheW-like domain DM194_23040 PF07194 P2 response regulator binding domain DM194_23045 PF00990 Diguanylate cyclase, GGDEF domain DM194_23045 PF00072 Response regulator receiver domain DM194_23050 PF03705 CheR methyltransferase, all-alpha domain DM194_23050 PF01739 CheR methyltransferase, SAM binding domain DM194_23060 PF00072 Response regulator receiver domain DM194_23060 PF01339 CheB methylesterase DM194_23065 PF01584 CheW-like domain DM194_23070 PF00672 HAMP domain DM194_23070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_23070 PF16591 Helical bimodular sensor domain DM194_23075 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DM194_23075 PF04509 CheC-like family DM194_23080 PF01339 CheB methylesterase DM194_23080 PF00072 Response regulator receiver domain DM194_23090 PF03180 NLPA lipoprotein DM194_23095 PF00528 Binding-protein-dependent transport system inner membrane component DM194_23105 PF03180 NLPA lipoprotein DM194_23115 PF01634 ATP phosphoribosyltransferase DM194_23120 PF00815 Histidinol dehydrogenase DM194_23125 PF06793 Uncharacterised protein family (UPF0262) DM194_23130 PF01451 Low molecular weight phosphotyrosine protein phosphatase DM194_23145 PF01176 Translation initiation factor 1A / IF-1 DM194_23150 PF02545 Maf-like protein DM194_23155 PF10150 Ribonuclease E/G family DM194_23160 PF03884 DNA gyrase inhibitor YacG DM194_23175 PF00132 Bacterial transferase hexapeptide (six repeats) DM194_23175 PF06426 Serine acetyltransferase, N-terminal DM194_23185 PF01494 FAD binding domain DM194_23195 PF00005 ABC transporter DM194_23215 PF02233 NAD(P) transhydrogenase beta subunit DM194_23220 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch DM194_23225 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DM194_23225 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DM194_23230 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) DM194_23265 PF01494 FAD binding domain DM194_23270 PF00543 Nitrogen regulatory protein P-II DM194_23285 PF13491 4TM region of DNA translocase FtsK/SpoIIIE DM194_23285 PF01580 FtsK/SpoIIIE family DM194_23285 PF17854 FtsK alpha domain DM194_23290 PF00950 ABC 3 transport family DM194_23295 PF00005 ABC transporter DM194_23300 PF01297 Zinc-uptake complex component A periplasmic DM194_23315 PF01113 Dihydrodipicolinate reductase, N-terminus DM194_23315 PF05173 Dihydrodipicolinate reductase, C-terminus DM194_23320 PF11849 Domain of unknown function (DUF3369) DM194_23325 PF01810 LysE type translocator DM194_23335 PF00970 Oxidoreductase FAD-binding domain DM194_23335 PF00175 Oxidoreductase NAD-binding domain DM194_23340 PF09856 Predicted transcriptional regulator (DUF2083) DM194_23340 PF06114 IrrE N-terminal-like domain DM194_23340 PF01381 Helix-turn-helix DM194_23345 PF00463 Isocitrate lyase family DM194_23350 PF01965 DJ-1/PfpI family DM194_23355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_23355 PF00672 HAMP domain DM194_23360 PF02153 Prephenate dehydrogenase DM194_23365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_23365 PF03466 LysR substrate binding domain DM194_23370 PF00578 AhpC/TSA family DM194_23370 PF10417 C-terminal domain of 1-Cys peroxiredoxin DM194_23375 PF07992 Pyridine nucleotide-disulphide oxidoreductase DM194_23375 PF13192 Thioredoxin domain DM194_23400 PF05717 IS66 Orf2 like protein DM194_23405 PF03050 Transposase IS66 family DM194_23405 PF13005 zinc-finger binding domain of transposase IS66 DM194_23405 PF13007 Transposase C of IS166 homeodomain DM194_23405 PF13817 IS66 C-terminal element DM194_23430 PF03975 CheD chemotactic sensory transduction DM194_23445 PF07690 Major Facilitator Superfamily DM194_23455 PF00672 HAMP domain DM194_23455 PF07730 Histidine kinase DM194_23455 PF16448 LapD/MoxY periplasmic domain DM194_23460 PF00497 Bacterial extracellular solute-binding proteins, family 3 DM194_23465 PF00528 Binding-protein-dependent transport system inner membrane component DM194_23470 PF00528 Binding-protein-dependent transport system inner membrane component DM194_23475 PF00005 ABC transporter DM194_23480 PF00486 Transcriptional regulatory protein, C terminal DM194_23480 PF00072 Response regulator receiver domain DM194_23485 PF00497 Bacterial extracellular solute-binding proteins, family 3 DM194_23490 PF00005 ABC transporter DM194_23495 PF12399 Branched-chain amino acid ATP-binding cassette transporter DM194_23495 PF00005 ABC transporter DM194_23510 PF13458 Periplasmic binding protein DM194_23515 PF12146 Serine aminopeptidase, S33 DM194_23520 PF02627 Carboxymuconolactone decarboxylase family DM194_23525 PF00206 Lyase DM194_23525 PF10397 Adenylosuccinate lyase C-terminus DM194_23530 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal DM194_23530 PF00775 Dioxygenase DM194_23540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_23540 PF00672 HAMP domain DM194_23545 PF03480 Bacterial extracellular solute-binding protein, family 7 DM194_23550 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DM194_23565 PF00356 Bacterial regulatory proteins, lacI family DM194_23565 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DM194_23570 PF00672 HAMP domain DM194_23570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_23585 PF01170 Putative RNA methylase family UPF0020 DM194_23585 PF02926 THUMP domain DM194_23585 PF10672 S-adenosylmethionine-dependent methyltransferase DM194_23605 PF01212 Beta-eliminating lyase DM194_23615 PF00849 RNA pseudouridylate synthase DM194_23620 PF04545 Sigma-70, region 4 DM194_23620 PF04542 Sigma-70 region 2 DM194_23620 PF00140 Sigma-70 factor, region 1.2 DM194_23625 PF00583 Acetyltransferase (GNAT) family DM194_23630 PF02567 Phenazine biosynthesis-like protein DM194_23635 PF00291 Pyridoxal-phosphate dependent enzyme DM194_23650 PF00248 Aldo/keto reductase family DM194_23655 PF01546 Peptidase family M20/M25/M40 DM194_23655 PF07687 Peptidase dimerisation domain DM194_23660 PF13614 AAA domain DM194_23675 PF03960 ArsC family DM194_23680 PF01758 Sodium Bile acid symporter family DM194_23685 PF03358 NADPH-dependent FMN reductase DM194_23690 PF00171 Aldehyde dehydrogenase family DM194_23695 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DM194_23695 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DM194_23695 PF02770 Acyl-CoA dehydrogenase, middle domain DM194_23700 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DM194_23700 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DM194_23725 PF05860 haemagglutination activity domain DM194_23730 PF04209 homogentisate 1,2-dioxygenase DM194_23745 PF00005 ABC transporter DM194_23745 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DM194_23755 PF00528 Binding-protein-dependent transport system inner membrane component DM194_23760 PF12911 N-terminal TM domain of oligopeptide transport permease C DM194_23760 PF00528 Binding-protein-dependent transport system inner membrane component DM194_23770 PF00534 Glycosyl transferases group 1 DM194_23775 PF13439 Glycosyltransferase Family 4 DM194_23775 PF00534 Glycosyl transferases group 1 DM194_23780 PF00300 Histidine phosphatase superfamily (branch 1) DM194_23795 PF00150 Cellulase (glycosyl hydrolase family 5) DM194_23800 PF02887 Pyruvate kinase, alpha/beta domain DM194_23800 PF00224 Pyruvate kinase, barrel domain DM194_23825 PF00248 Aldo/keto reductase family DM194_23830 PF07690 Major Facilitator Superfamily DM194_23835 PF03466 LysR substrate binding domain DM194_23835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_23875 PF01553 Acyltransferase DM194_23875 PF00501 AMP-binding enzyme DM194_23880 PF00005 ABC transporter DM194_23900 PF00403 Heavy-metal-associated domain DM194_23910 PF01144 Coenzyme A transferase DM194_23915 PF01144 Coenzyme A transferase DM194_23920 PF00106 short chain dehydrogenase DM194_23930 PF13545 Crp-like helix-turn-helix domain DM194_23930 PF00027 Cyclic nucleotide-binding domain DM194_23940 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding DM194_23955 PF00211 Adenylate and Guanylate cyclase catalytic domain DM194_23955 PF13191 AAA ATPase domain DM194_23960 PF00920 Dehydratase family DM194_24000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_24000 PF03466 LysR substrate binding domain DM194_24015 PF00849 RNA pseudouridylate synthase DM194_24020 PF00483 Nucleotidyl transferase DM194_24025 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DM194_24025 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DM194_24025 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DM194_24030 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DM194_24030 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DM194_24030 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DM194_24030 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DM194_24040 PF00005 ABC transporter DM194_24045 PF13533 Biotin-lipoyl like DM194_24050 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DM194_24050 PF10996 Beta-Casp domain DM194_24050 PF00753 Metallo-beta-lactamase superfamily DM194_24055 PF02885 Glycosyl transferase family, helical bundle domain DM194_24055 PF00591 Glycosyl transferase family, a/b domain DM194_24055 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain DM194_24060 PF00085 Thioredoxin DM194_24075 PF08281 Sigma-70, region 4 DM194_24075 PF04542 Sigma-70 region 2 DM194_24080 PF00873 AcrB/AcrD/AcrF family DM194_24085 PF00873 AcrB/AcrD/AcrF family DM194_24095 PF07729 FCD domain DM194_24095 PF00392 Bacterial regulatory proteins, gntR family DM194_24105 PF00202 Aminotransferase class-III DM194_24120 PF02770 Acyl-CoA dehydrogenase, middle domain DM194_24120 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DM194_24120 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DM194_24125 PF00672 HAMP domain DM194_24125 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_24135 PF00005 ABC transporter DM194_24140 PF12399 Branched-chain amino acid ATP-binding cassette transporter DM194_24140 PF00005 ABC transporter DM194_24145 PF11862 Domain of unknown function (DUF3382) DM194_24145 PF02653 Branched-chain amino acid transport system / permease component DM194_24150 PF02653 Branched-chain amino acid transport system / permease component DM194_24160 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DM194_24160 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DM194_24165 PF01037 Lrp/AsnC ligand binding domain DM194_24170 PF11799 impB/mucB/samB family C-terminal domain DM194_24170 PF00817 impB/mucB/samB family DM194_24180 PF00196 Bacterial regulatory proteins, luxR family DM194_24180 PF00072 Response regulator receiver domain DM194_24185 PF00512 His Kinase A (phospho-acceptor) domain DM194_24185 PF00672 HAMP domain DM194_24185 PF00072 Response regulator receiver domain DM194_24185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_24185 PF01627 Hpt domain DM194_24210 PF00989 PAS fold DM194_24210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_24210 PF00512 His Kinase A (phospho-acceptor) domain DM194_24220 PF01384 Phosphate transporter family DM194_24235 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DM194_24235 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DM194_24245 PF14698 Argininosuccinate lyase C-terminal DM194_24245 PF00206 Lyase DM194_24250 PF08534 Redoxin DM194_24260 PF13660 Domain of unknown function (DUF4147) DM194_24260 PF05161 MOFRL family DM194_24265 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DM194_24265 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DM194_24270 PF01261 Xylose isomerase-like TIM barrel DM194_24275 PF07992 Pyridine nucleotide-disulphide oxidoreductase DM194_24275 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DM194_24280 PF00392 Bacterial regulatory proteins, gntR family DM194_24280 PF07729 FCD domain DM194_24290 PF03741 Integral membrane protein TerC family DM194_24295 PF03480 Bacterial extracellular solute-binding protein, family 7 DM194_24305 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DM194_24310 PF00107 Zinc-binding dehydrogenase DM194_24310 PF08240 Alcohol dehydrogenase GroES-like domain DM194_24320 PF00881 Nitroreductase family DM194_24325 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DM194_24325 PF07685 CobB/CobQ-like glutamine amidotransferase domain DM194_24330 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DM194_24335 PF01888 CbiD DM194_24340 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DM194_24350 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DM194_24355 PF02571 Precorrin-6x reductase CbiJ/CobK DM194_24360 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DM194_24365 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DM194_24370 PF02570 Precorrin-8X methylmutase DM194_24375 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DM194_24380 PF02514 CobN/Magnesium Chelatase DM194_24385 PF07683 Cobalamin synthesis protein cobW C-terminal domain DM194_24385 PF02492 CobW/HypB/UreG, nucleotide-binding domain DM194_24400 PF00005 ABC transporter DM194_24400 PF12399 Branched-chain amino acid ATP-binding cassette transporter DM194_24405 PF00005 ABC transporter DM194_24415 PF02653 Branched-chain amino acid transport system / permease component DM194_24425 PF00158 Sigma-54 interaction domain DM194_24425 PF13185 GAF domain DM194_24425 PF02954 Bacterial regulatory protein, Fis family DM194_24430 PF09339 IclR helix-turn-helix domain DM194_24435 PF00291 Pyridoxal-phosphate dependent enzyme DM194_24435 PF13291 ACT domain DM194_24445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_24445 PF00512 His Kinase A (phospho-acceptor) domain DM194_24445 PF00989 PAS fold DM194_24455 PF03186 CobD/Cbib protein DM194_24460 PF00155 Aminotransferase class I and II DM194_24465 PF00990 Diguanylate cyclase, GGDEF domain DM194_24465 PF00072 Response regulator receiver domain DM194_24475 PF00072 Response regulator receiver domain DM194_24475 PF01627 Hpt domain DM194_24475 PF00512 His Kinase A (phospho-acceptor) domain DM194_24475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_24475 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DM194_24475 PF00672 HAMP domain DM194_24480 PF01464 Transglycosylase SLT domain DM194_24480 PF00497 Bacterial extracellular solute-binding proteins, family 3 DM194_24500 PF00106 short chain dehydrogenase DM194_24505 PF00012 Hsp70 protein DM194_24510 PF06826 Predicted Permease Membrane Region DM194_24510 PF02080 TrkA-C domain DM194_24515 PF10609 NUBPL iron-transfer P-loop NTPase DM194_24520 PF12221 Bacterial membrane protein N terminal DM194_24520 PF01145 SPFH domain / Band 7 family DM194_24525 PF01145 SPFH domain / Band 7 family DM194_24530 PF13180 PDZ domain DM194_24535 PF00072 Response regulator receiver domain DM194_24535 PF00196 Bacterial regulatory proteins, luxR family DM194_24545 PF03466 LysR substrate binding domain DM194_24545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_24550 PF01470 Pyroglutamyl peptidase DM194_24560 PF04542 Sigma-70 region 2 DM194_24560 PF00140 Sigma-70 factor, region 1.2 DM194_24560 PF04545 Sigma-70, region 4 DM194_24570 PF13426 PAS domain DM194_24570 PF07568 Histidine kinase DM194_24570 PF13581 Histidine kinase-like ATPase domain DM194_24580 PF00892 EamA-like transporter family DM194_24585 PF00512 His Kinase A (phospho-acceptor) domain DM194_24585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_24595 PF10090 Histidine phosphotransferase C-terminal domain DM194_24600 PF01627 Hpt domain DM194_24600 PF07194 P2 response regulator binding domain DM194_24600 PF01584 CheW-like domain DM194_24600 PF02895 Signal transducing histidine kinase, homodimeric domain DM194_24600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_24605 PF01584 CheW-like domain DM194_24615 PF00072 Response regulator receiver domain DM194_24615 PF01339 CheB methylesterase DM194_24620 PF01739 CheR methyltransferase, SAM binding domain DM194_24620 PF03705 CheR methyltransferase, all-alpha domain DM194_24635 PF00313 'Cold-shock' DNA-binding domain DM194_24640 PF00486 Transcriptional regulatory protein, C terminal DM194_24640 PF00072 Response regulator receiver domain DM194_24645 PF18269 T3SS EscN ATPase C-terminal domain DM194_24645 PF02874 ATP synthase alpha/beta family, beta-barrel domain DM194_24645 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DM194_24655 PF07733 Bacterial DNA polymerase III alpha NTPase domain DM194_24655 PF02811 PHP domain DM194_24655 PF14579 Helix-hairpin-helix motif DM194_24655 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DM194_24665 PF00892 EamA-like transporter family DM194_24670 PF08448 PAS fold DM194_24670 PF13188 PAS domain DM194_24670 PF00072 Response regulator receiver domain DM194_24670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_24670 PF00512 His Kinase A (phospho-acceptor) domain DM194_24685 PF08003 Protein of unknown function (DUF1698) DM194_24690 PF00300 Histidine phosphatase superfamily (branch 1) DM194_24695 PF01658 Myo-inositol-1-phosphate synthase DM194_24700 PF01370 NAD dependent epimerase/dehydratase family DM194_24705 PF16363 GDP-mannose 4,6 dehydratase DM194_24710 PF02310 B12 binding domain DM194_24710 PF04055 Radical SAM superfamily DM194_24735 PF00072 Response regulator receiver domain DM194_24740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_24740 PF00512 His Kinase A (phospho-acceptor) domain DM194_24750 PF03626 Prokaryotic Cytochrome C oxidase subunit IV DM194_24755 PF00510 Cytochrome c oxidase subunit III DM194_24760 PF00115 Cytochrome C and Quinol oxidase polypeptide I DM194_24765 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DM194_24765 PF06481 COX Aromatic Rich Motif DM194_24770 PF00083 Sugar (and other) transporter DM194_24770 PF07690 Major Facilitator Superfamily DM194_24795 PF08240 Alcohol dehydrogenase GroES-like domain DM194_24795 PF00107 Zinc-binding dehydrogenase DM194_24795 PF13823 Alcohol dehydrogenase GroES-associated DM194_24815 PF04307 LexA-binding, inner membrane-associated putative hydrolase DM194_24820 PF01619 Proline dehydrogenase DM194_24820 PF00171 Aldehyde dehydrogenase family DM194_24820 PF18327 Proline utilization A proline dehydrogenase N-terminal domain DM194_24820 PF14850 DNA-binding domain of Proline dehydrogenase DM194_24835 PF02056 Family 4 glycosyl hydrolase DM194_24835 PF11975 Family 4 glycosyl hydrolase C-terminal domain DM194_24840 PF00232 Glycosyl hydrolase family 1 DM194_24845 PF06472 ABC transporter transmembrane region 2 DM194_24845 PF00005 ABC transporter DM194_24855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_24855 PF16591 Helical bimodular sensor domain DM194_24855 PF00672 HAMP domain DM194_24860 PF00550 Phosphopantetheine attachment site DM194_24890 PF07687 Peptidase dimerisation domain DM194_24890 PF01546 Peptidase family M20/M25/M40 DM194_24895 PF07687 Peptidase dimerisation domain DM194_24895 PF01546 Peptidase family M20/M25/M40 DM194_24915 PF01011 PQQ enzyme repeat DM194_24920 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DM194_24920 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DM194_24925 PF00766 Electron transfer flavoprotein FAD-binding domain DM194_24925 PF01012 Electron transfer flavoprotein domain DM194_24930 PF01012 Electron transfer flavoprotein domain DM194_24935 PF01923 Cobalamin adenosyltransferase DM194_24945 PF00232 Glycosyl hydrolase family 1 DM194_24950 PF02525 Flavodoxin-like fold DM194_24975 PF00730 HhH-GPD superfamily base excision DNA repair protein DM194_24975 PF00633 Helix-hairpin-helix motif DM194_24975 PF10576 Iron-sulfur binding domain of endonuclease III DM194_24980 PF00005 ABC transporter DM194_24985 PF02405 Permease MlaE DM194_24990 PF00842 Alanine racemase, C-terminal domain DM194_24990 PF01168 Alanine racemase, N-terminal domain DM194_24995 PF00772 DnaB-like helicase N terminal domain DM194_24995 PF03796 DnaB-like helicase C terminal domain DM194_25000 PF03641 Possible lysine decarboxylase DM194_25005 PF01322 Cytochrome C' DM194_25010 PF00034 Cytochrome c DM194_25025 PF01544 CorA-like Mg2+ transporter protein DM194_25040 PF00672 HAMP domain DM194_25040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_25040 PF02203 Tar ligand binding domain homologue DM194_25050 PF00563 EAL domain DM194_25050 PF03707 Bacterial signalling protein N terminal repeat DM194_25050 PF00990 Diguanylate cyclase, GGDEF domain DM194_25055 PF00072 Response regulator receiver domain DM194_25060 PF07687 Peptidase dimerisation domain DM194_25060 PF01546 Peptidase family M20/M25/M40 DM194_25080 PF00156 Phosphoribosyl transferase domain DM194_25085 PF02405 Permease MlaE DM194_25090 PF00005 ABC transporter DM194_25095 PF03886 ABC-type transport auxiliary lipoprotein component DM194_25095 PF02470 MlaD protein DM194_25115 PF00989 PAS fold DM194_25115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_25115 PF00512 His Kinase A (phospho-acceptor) domain DM194_25125 PF13382 Adenine deaminase C-terminal domain DM194_25125 PF01979 Amidohydrolase family DM194_25130 PF02129 X-Pro dipeptidyl-peptidase (S15 family) DM194_25130 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain DM194_25140 PF01814 Hemerythrin HHE cation binding domain DM194_25155 PF00994 Probable molybdopterin binding domain DM194_25160 PF01464 Transglycosylase SLT domain DM194_25165 PF03167 Uracil DNA glycosylase superfamily DM194_25175 PF13717 zinc-ribbon domain DM194_25180 PF18024 Helix-turn-helix domain DM194_25180 PF00158 Sigma-54 interaction domain DM194_25185 PF01266 FAD dependent oxidoreductase DM194_25195 PF02589 LUD domain DM194_25200 PF02589 LUD domain DM194_25200 PF13183 4Fe-4S dicluster domain DM194_25200 PF11870 Domain of unknown function (DUF3390) DM194_25205 PF02754 Cysteine-rich domain DM194_25215 PF00392 Bacterial regulatory proteins, gntR family DM194_25215 PF07729 FCD domain DM194_25220 PF00158 Sigma-54 interaction domain DM194_25220 PF02954 Bacterial regulatory protein, Fis family DM194_25220 PF00072 Response regulator receiver domain DM194_25225 PF00672 HAMP domain DM194_25225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_25225 PF00512 His Kinase A (phospho-acceptor) domain DM194_25225 PF01627 Hpt domain DM194_25225 PF00072 Response regulator receiver domain DM194_25225 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DM194_25235 PF00285 Citrate synthase, C-terminal domain DM194_25245 PF00196 Bacterial regulatory proteins, luxR family DM194_25245 PF00072 Response regulator receiver domain DM194_25250 PF00512 His Kinase A (phospho-acceptor) domain DM194_25250 PF00497 Bacterial extracellular solute-binding proteins, family 3 DM194_25250 PF00072 Response regulator receiver domain DM194_25250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_25250 PF00989 PAS fold DM194_25250 PF01627 Hpt domain DM194_25260 PF00083 Sugar (and other) transporter DM194_25270 PF00497 Bacterial extracellular solute-binding proteins, family 3 DM194_25275 PF17149 Periplasmic sensor domain found in signal transduction proteins DM194_25275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_25275 PF01627 Hpt domain DM194_25275 PF00072 Response regulator receiver domain DM194_25275 PF00672 HAMP domain DM194_25275 PF00512 His Kinase A (phospho-acceptor) domain DM194_25280 PF00392 Bacterial regulatory proteins, gntR family DM194_25280 PF00155 Aminotransferase class I and II DM194_25285 PF00072 Response regulator receiver domain DM194_25285 PF00486 Transcriptional regulatory protein, C terminal DM194_25300 PF01641 SelR domain DM194_25315 PF07690 Major Facilitator Superfamily DM194_25330 PF08544 GHMP kinases C terminal DM194_25330 PF00288 GHMP kinases N terminal domain DM194_25340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_25340 PF16591 Helical bimodular sensor domain DM194_25340 PF00672 HAMP domain DM194_25345 PF01209 ubiE/COQ5 methyltransferase family DM194_25350 PF00753 Metallo-beta-lactamase superfamily DM194_25350 PF16123 Hydroxyacylglutathione hydrolase C-terminus DM194_25400 PF12826 Helix-hairpin-helix motif DM194_25400 PF02151 UvrB/uvrC motif DM194_25400 PF08459 UvrC Helix-hairpin-helix N-terminal DM194_25400 PF01541 GIY-YIG catalytic domain DM194_25405 PF00478 IMP dehydrogenase / GMP reductase domain DM194_25410 PF08220 DeoR-like helix-turn-helix domain DM194_25410 PF00455 DeoR C terminal sensor domain DM194_25415 PF01266 FAD dependent oxidoreductase DM194_25415 PF16901 C-terminal domain of alpha-glycerophosphate oxidase DM194_25420 PF00005 ABC transporter DM194_25420 PF08402 TOBE domain DM194_25425 PF00005 ABC transporter DM194_25425 PF17912 MalK OB fold domain DM194_25430 PF00528 Binding-protein-dependent transport system inner membrane component DM194_25450 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DM194_25450 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DM194_25455 PF13193 AMP-binding enzyme C-terminal domain DM194_25455 PF00501 AMP-binding enzyme DM194_25470 PF08241 Methyltransferase domain DM194_25485 PF03150 Di-haem cytochrome c peroxidase DM194_25495 PF12801 4Fe-4S binding domain DM194_25495 PF13746 4Fe-4S dicluster domain DM194_25495 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase DM194_25505 PF00497 Bacterial extracellular solute-binding proteins, family 3 DM194_25505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_25505 PF00512 His Kinase A (phospho-acceptor) domain DM194_25520 PF13180 PDZ domain DM194_25525 PF00535 Glycosyl transferase family 2 DM194_25545 PF00480 ROK family DM194_25555 PF02653 Branched-chain amino acid transport system / permease component DM194_25560 PF02653 Branched-chain amino acid transport system / permease component DM194_25560 PF11862 Domain of unknown function (DUF3382) DM194_25565 PF12399 Branched-chain amino acid ATP-binding cassette transporter DM194_25565 PF00005 ABC transporter DM194_25570 PF00005 ABC transporter DM194_25580 PF13458 Periplasmic binding protein DM194_25600 PF00691 OmpA family DM194_25605 PF00072 Response regulator receiver domain DM194_25605 PF00196 Bacterial regulatory proteins, luxR family DM194_25620 PF01380 SIS domain DM194_25620 PF01418 Helix-turn-helix domain, rpiR family DM194_25625 PF01557 Fumarylacetoacetate (FAA) hydrolase family DM194_25630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM194_25630 PF00672 HAMP domain DM194_25630 PF12729 Four helix bundle sensory module for signal transduction DM194_25640 PF00970 Oxidoreductase FAD-binding domain DM194_25640 PF00042 Globin DM194_25640 PF00175 Oxidoreductase NAD-binding domain DM194_25645 PF00158 Sigma-54 interaction domain DM194_25645 PF02954 Bacterial regulatory protein, Fis family DM194_25655 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DM194_25655 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component DM194_25665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_25665 PF00512 His Kinase A (phospho-acceptor) domain DM194_25670 PF00158 Sigma-54 interaction domain DM194_25670 PF00989 PAS fold DM194_25670 PF02954 Bacterial regulatory protein, Fis family DM194_25675 PF03786 D-mannonate dehydratase (UxuA) DM194_25680 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DM194_25695 PF03480 Bacterial extracellular solute-binding protein, family 7 DM194_25700 PF00107 Zinc-binding dehydrogenase DM194_25700 PF08240 Alcohol dehydrogenase GroES-like domain DM194_25705 PF08125 Mannitol dehydrogenase C-terminal domain DM194_25705 PF01232 Mannitol dehydrogenase Rossmann domain DM194_25710 PF00392 Bacterial regulatory proteins, gntR family DM194_25710 PF07729 FCD domain DM194_25715 PF00311 Phosphoenolpyruvate carboxylase DM194_25740 PF00989 PAS fold DM194_25740 PF00512 His Kinase A (phospho-acceptor) domain DM194_25740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_25750 PF04055 Radical SAM superfamily DM194_25750 PF11842 Domain of unknown function (DUF3362) DM194_25750 PF08497 Radical SAM N-terminal DM194_25755 PF07690 Major Facilitator Superfamily DM194_25765 PF00005 ABC transporter DM194_25770 PF00528 Binding-protein-dependent transport system inner membrane component DM194_25775 PF00528 Binding-protein-dependent transport system inner membrane component DM194_25780 PF12849 PBP superfamily domain DM194_25790 PF13417 Glutathione S-transferase, N-terminal domain DM194_25790 PF00043 Glutathione S-transferase, C-terminal domain DM194_25800 PF02254 TrkA-N domain DM194_25800 PF02080 TrkA-C domain DM194_25805 PF02386 Cation transport protein DM194_25830 PF03167 Uracil DNA glycosylase superfamily DM194_25840 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DM194_25845 PF00111 2Fe-2S iron-sulfur cluster binding domain DM194_25845 PF01799 [2Fe-2S] binding domain DM194_25850 PF03466 LysR substrate binding domain DM194_25850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_25855 PF07690 Major Facilitator Superfamily DM194_25860 PF00106 short chain dehydrogenase DM194_25865 PF00970 Oxidoreductase FAD-binding domain DM194_25865 PF00111 2Fe-2S iron-sulfur cluster binding domain DM194_25865 PF00175 Oxidoreductase NAD-binding domain DM194_25870 PF00866 Ring hydroxylating beta subunit DM194_25875 PF00355 Rieske [2Fe-2S] domain DM194_25875 PF00848 Ring hydroxylating alpha subunit (catalytic domain) DM194_25880 PF00775 Dioxygenase DM194_25880 PF04444 Catechol dioxygenase N terminus DM194_25885 PF02426 Muconolactone delta-isomerase DM194_25890 PF13378 Enolase C-terminal domain-like DM194_25890 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DM194_25895 PF03466 LysR substrate binding domain DM194_25895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_25900 PF00501 AMP-binding enzyme DM194_25900 PF13193 AMP-binding enzyme C-terminal domain DM194_25905 PF06912 Protein of unknown function (DUF1275) DM194_25910 PF04945 YHS domain DM194_25930 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DM194_25930 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DM194_25935 PF08543 Phosphomethylpyrimidine kinase DM194_25940 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DM194_25940 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DM194_25940 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DM194_25940 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DM194_25945 PF00809 Pterin binding enzyme DM194_25950 PF01312 FlhB HrpN YscU SpaS Family DM194_25960 PF00771 FHIPEP family DM194_25970 PF01313 Bacterial export proteins, family 3 DM194_25975 PF02049 Flagellar hook-basal body complex protein FliE DM194_25980 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DM194_25980 PF00460 Flagella basal body rod protein DM194_25990 PF18269 T3SS EscN ATPase C-terminal domain DM194_25990 PF02874 ATP synthase alpha/beta family, beta-barrel domain DM194_25990 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DM194_26020 PF07378 Flagellar protein FlbT DM194_26030 PF00700 Bacterial flagellin C-terminal helical region DM194_26030 PF00669 Bacterial flagellin N-terminal helical region DM194_26035 PF00072 Response regulator receiver domain DM194_26035 PF00486 Transcriptional regulatory protein, C terminal DM194_26050 PF01706 FliG C-terminal domain DM194_26050 PF14841 FliG middle domain DM194_26050 PF14842 FliG N-terminal domain DM194_26060 PF00813 FliP family DM194_26065 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DM194_26075 PF08345 Flagellar M-ring protein C-terminal DM194_26075 PF01514 Secretory protein of YscJ/FliF family DM194_26085 PF02154 Flagellar motor switch protein FliM DM194_26085 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DM194_26105 PF13861 FlgD Tudor-like domain DM194_26105 PF13860 FlgD Ig-like domain DM194_26105 PF03963 Flagellar hook capping protein - N-terminal region DM194_26115 PF02107 Flagellar L-ring protein DM194_26125 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DM194_26125 PF00460 Flagella basal body rod protein DM194_26130 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DM194_26130 PF00460 Flagella basal body rod protein DM194_26140 PF01618 MotA/TolQ/ExbB proton channel family DM194_26145 PF13677 Membrane MotB of proton-channel complex MotA/MotB DM194_26145 PF00691 OmpA family DM194_26150 PF07559 Flagellar basal body protein FlaE DM194_26150 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DM194_26150 PF00460 Flagella basal body rod protein DM194_26155 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DM194_26155 PF00460 Flagella basal body rod protein DM194_26165 PF02119 Flagellar P-ring protein DM194_26190 PF05717 IS66 Orf2 like protein DM194_26195 PF13005 zinc-finger binding domain of transposase IS66 DM194_26195 PF03050 Transposase IS66 family DM194_26195 PF13007 Transposase C of IS166 homeodomain DM194_26195 PF13817 IS66 C-terminal element DM194_26225 PF00296 Luciferase-like monooxygenase DM194_26230 PF00999 Sodium/hydrogen exchanger family DM194_26235 PF00072 Response regulator receiver domain DM194_26235 PF13426 PAS domain DM194_26235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_26240 PF00689 Cation transporting ATPase, C-terminus DM194_26240 PF00690 Cation transporter/ATPase, N-terminus DM194_26255 PF01926 50S ribosome-binding GTPase DM194_26255 PF13167 GTP-binding GTPase N-terminal DM194_26255 PF16360 GTP-binding GTPase Middle Region DM194_26275 PF00873 AcrB/AcrD/AcrF family DM194_26280 PF13533 Biotin-lipoyl like DM194_26285 PF00440 Bacterial regulatory proteins, tetR family DM194_26295 PF01494 FAD binding domain DM194_26300 PF17762 HTH domain found in ParB protein DM194_26300 PF02195 ParB-like nuclease domain DM194_26305 PF13614 AAA domain DM194_26310 PF00571 CBS domain DM194_26310 PF03471 Transporter associated domain DM194_26310 PF01595 Cyclin M transmembrane N-terminal domain DM194_26330 PF00376 MerR family regulatory protein DM194_26330 PF09278 MerR, DNA binding DM194_26340 PF00356 Bacterial regulatory proteins, lacI family DM194_26340 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DM194_26345 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DM194_26345 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DM194_26350 PF07690 Major Facilitator Superfamily DM194_26355 PF08361 MAATS-type transcriptional repressor, C-terminal region DM194_26355 PF00440 Bacterial regulatory proteins, tetR family DM194_26370 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DM194_26370 PF00529 HlyD membrane-fusion protein of T1SS DM194_26375 PF00873 AcrB/AcrD/AcrF family DM194_26385 PF12706 Beta-lactamase superfamily domain DM194_26385 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DM194_26385 PF17770 Ribonuclease J C-terminal domain DM194_26390 PF01042 Endoribonuclease L-PSP DM194_26400 PF00920 Dehydratase family DM194_26405 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DM194_26410 PF02653 Branched-chain amino acid transport system / permease component DM194_26415 PF00005 ABC transporter DM194_26420 PF13407 Periplasmic binding protein domain DM194_26425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_26425 PF03466 LysR substrate binding domain DM194_26430 PF08450 SMP-30/Gluconolactonase/LRE-like region DM194_26435 PF00701 Dihydrodipicolinate synthetase family DM194_26440 PF00171 Aldehyde dehydrogenase family DM194_26445 PF13407 Periplasmic binding protein domain DM194_26450 PF00005 ABC transporter DM194_26455 PF02653 Branched-chain amino acid transport system / permease component DM194_26460 PF02653 Branched-chain amino acid transport system / permease component DM194_26465 PF01263 Aldose 1-epimerase DM194_26470 PF13091 PLD-like domain DM194_26470 PF13396 Phospholipase_D-nuclease N-terminal DM194_26500 PF00248 Aldo/keto reductase family DM194_26505 PF00005 ABC transporter DM194_26510 PF00528 Binding-protein-dependent transport system inner membrane component DM194_26520 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DM194_26520 PF07992 Pyridine nucleotide-disulphide oxidoreductase DM194_26520 PF18267 Rubredoxin NAD+ reductase C-terminal domain DM194_26520 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DM194_26520 PF04324 BFD-like [2Fe-2S] binding domain DM194_26530 PF00384 Molybdopterin oxidoreductase DM194_26530 PF01568 Molydopterin dinucleotide binding domain DM194_26530 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DM194_26530 PF04324 BFD-like [2Fe-2S] binding domain DM194_26540 PF10414 Sirohaem synthase dimerisation region DM194_26540 PF14824 Sirohaem biosynthesis protein central DM194_26540 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DM194_26545 PF00877 NlpC/P60 family DM194_26580 PF08548 Peptidase M10 serralysin C terminal DM194_26580 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) DM194_26580 PF00413 Matrixin DM194_26630 PF13419 Haloacid dehalogenase-like hydrolase DM194_26660 PF01370 NAD dependent epimerase/dehydratase family DM194_26665 PF00676 Dehydrogenase E1 component DM194_26670 PF02780 Transketolase, C-terminal domain DM194_26670 PF02779 Transketolase, pyrimidine binding domain DM194_26675 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DM194_26685 PF01008 Initiation factor 2 subunit family DM194_26715 PF00483 Nucleotidyl transferase DM194_26720 PF07722 Peptidase C26 DM194_26725 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DM194_26725 PF00391 PEP-utilising enzyme, mobile domain DM194_26755 PF02310 B12 binding domain DM194_26755 PF04055 Radical SAM superfamily DM194_26765 PF00293 NUDIX domain DM194_26785 PF03412 Peptidase C39 family DM194_26785 PF00005 ABC transporter DM194_26785 PF00664 ABC transporter transmembrane region DM194_26800 PF01370 NAD dependent epimerase/dehydratase family DM194_26805 PF00534 Glycosyl transferases group 1 DM194_26805 PF13439 Glycosyltransferase Family 4 DM194_26820 PF01526 Tn3 transposase DDE domain DM194_26820 PF13700 Domain of unknown function (DUF4158) DM194_26825 PF00378 Enoyl-CoA hydratase/isomerase DM194_26830 PF00440 Bacterial regulatory proteins, tetR family DM194_26830 PF16859 Tetracyclin repressor-like, C-terminal domain DM194_26835 PF02796 Helix-turn-helix domain of resolvase DM194_26835 PF00239 Resolvase, N terminal domain DM194_26840 PF01209 ubiE/COQ5 methyltransferase family DM194_26845 PF05958 tRNA (Uracil-5-)-methyltransferase DM194_26855 PF16363 GDP-mannose 4,6 dehydratase DM194_26860 PF16363 GDP-mannose 4,6 dehydratase DM194_26910 PF00733 Asparagine synthase DM194_26910 PF13537 Glutamine amidotransferase domain DM194_26915 PF01385 Probable transposase DM194_26915 PF12323 Helix-turn-helix domain DM194_26915 PF07282 Putative transposase DNA-binding domain DM194_26930 PF00535 Glycosyl transferase family 2 DM194_26945 PF08241 Methyltransferase domain DM194_26955 PF00534 Glycosyl transferases group 1 DM194_26975 PF13614 AAA domain DM194_26995 PF04079 Segregation and condensation complex subunit ScpB DM194_27045 PF13426 PAS domain DM194_27045 PF00072 Response regulator receiver domain DM194_27045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_27085 PF00072 Response regulator receiver domain DM194_27100 PF00589 Phage integrase family DM194_27105 PF00486 Transcriptional regulatory protein, C terminal DM194_27105 PF00072 Response regulator receiver domain DM194_27110 PF13493 Domain of unknown function (DUF4118) DM194_27110 PF13492 GAF domain DM194_27110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_27110 PF00512 His Kinase A (phospho-acceptor) domain DM194_27110 PF02702 Osmosensitive K+ channel His kinase sensor domain DM194_27115 PF02669 K+-transporting ATPase, c chain DM194_27125 PF03814 Potassium-transporting ATPase A subunit DM194_27135 PF00230 Major intrinsic protein DM194_27165 PF00403 Heavy-metal-associated domain DM194_27170 PF09278 MerR, DNA binding DM194_27170 PF00376 MerR family regulatory protein DM194_27175 PF00512 His Kinase A (phospho-acceptor) domain DM194_27175 PF08448 PAS fold DM194_27175 PF13188 PAS domain DM194_27175 PF00072 Response regulator receiver domain DM194_27175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_27180 PF00768 D-alanyl-D-alanine carboxypeptidase DM194_27180 PF07943 Penicillin-binding protein 5, C-terminal domain DM194_27185 PF00072 Response regulator receiver domain DM194_27185 PF13188 PAS domain DM194_27185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM194_27185 PF08448 PAS fold DM194_27185 PF00512 His Kinase A (phospho-acceptor) domain DM194_27190 PF00707 Translation initiation factor IF-3, C-terminal domain DM194_27190 PF05198 Translation initiation factor IF-3, N-terminal domain DM194_27200 PF04228 Putative neutral zinc metallopeptidase DM194_27220 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DM194_27220 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DM194_27220 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DM194_27240 PF00009 Elongation factor Tu GTP binding domain DM194_27245 PF01507 Phosphoadenosine phosphosulfate reductase family DM194_27260 PF00005 ABC transporter DM194_27265 PF00535 Glycosyl transferase family 2 DM194_27270 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase DM194_27275 PF16363 GDP-mannose 4,6 dehydratase DM194_27280 PF04321 RmlD substrate binding domain DM194_27285 PF00483 Nucleotidyl transferase DM194_27290 PF01370 NAD dependent epimerase/dehydratase family DM194_27305 PF01370 NAD dependent epimerase/dehydratase family DM194_27320 PF03412 Peptidase C39 family DM194_27320 PF00005 ABC transporter DM194_27320 PF00664 ABC transporter transmembrane region DM194_27330 PF00483 Nucleotidyl transferase DM194_27330 PF01050 Mannose-6-phosphate isomerase DM194_27350 PF13439 Glycosyltransferase Family 4 DM194_27350 PF00534 Glycosyl transferases group 1 DM194_27360 PF02719 Polysaccharide biosynthesis protein DM194_27365 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DM194_27370 PF14667 Polysaccharide biosynthesis C-terminal domain DM194_27370 PF01943 Polysaccharide biosynthesis protein DM194_27385 PF01205 Uncharacterized protein family UPF0029 DM194_27400 PF00005 ABC transporter DM194_27400 PF03412 Peptidase C39 family DM194_27400 PF00664 ABC transporter transmembrane region DM194_27430 PF00535 Glycosyl transferase family 2 DM194_27495 PF00848 Ring hydroxylating alpha subunit (catalytic domain) DM194_27495 PF00355 Rieske [2Fe-2S] domain DM194_27510 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DM194_27510 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DM194_27535 PF05711 Macrocin-O-methyltransferase (TylF) DM194_27550 PF13439 Glycosyltransferase Family 4 DM194_27550 PF00534 Glycosyl transferases group 1 DM194_27570 PF05433 Glycine zipper 2TM domain DM194_27570 PF16998 17 kDa outer membrane surface antigen DM194_27605 PF00271 Helicase conserved C-terminal domain DM194_27605 PF18337 RapA N-terminal Tudor like domain DM194_27605 PF18339 RapA N-terminal Tudor like domain 1 DM194_27605 PF00176 SNF2 family N-terminal domain DM194_27605 PF12137 RNA polymerase recycling family C-terminal DM194_27615 PF00145 C-5 cytosine-specific DNA methylase DM194_27630 PF03852 DNA mismatch endonuclease Vsr DM194_27650 PF17755 UvrA DNA-binding domain DM194_27650 PF17760 UvrA interaction domain DM194_27655 PF13649 Methyltransferase domain DM194_27805 PF00072 Response regulator receiver domain DM194_27805 PF00196 Bacterial regulatory proteins, luxR family DM194_27825 PF00459 Inositol monophosphatase family DM194_27845 PF01047 MarR family DM194_27850 PF02566 OsmC-like protein DM194_27855 PF07859 alpha/beta hydrolase fold DM194_27865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM194_27865 PF03466 LysR substrate binding domain DM194_27870 PF01042 Endoribonuclease L-PSP DM194_27875 PF02801 Beta-ketoacyl synthase, C-terminal domain DM194_27875 PF00550 Phosphopantetheine attachment site DM194_27875 PF08659 KR domain DM194_27875 PF00109 Beta-ketoacyl synthase, N-terminal domain DM194_27875 PF16197 Ketoacyl-synthetase C-terminal extension DM194_27875 PF14765 Polyketide synthase dehydratase DM194_27875 PF08240 Alcohol dehydrogenase GroES-like domain DM194_27875 PF00698 Acyl transferase domain DM194_27875 PF08990 Erythronolide synthase docking DM194_27880 PF01638 HxlR-like helix-turn-helix DM194_27890 PF06441 Epoxide hydrolase N terminus DM194_27910 PF02796 Helix-turn-helix domain of resolvase DM194_27910 PF00239 Resolvase, N terminal domain DM194_27915 PF13700 Domain of unknown function (DUF4158) DM194_27915 PF01526 Tn3 transposase DDE domain DM194_27935 PF17191 RecG wedge domain DM194_27935 PF00271 Helicase conserved C-terminal domain DM194_27935 PF00270 DEAD/DEAH box helicase DM194_27940 PF00580 UvrD/REP helicase N-terminal domain DM194_27940 PF12705 PD-(D/E)XK nuclease superfamily DM194_27940 PF13361 UvrD-like helicase C-terminal domain