locus-tag	class	description
AL072_00005	COG0523	cobalamin synthesis protein
AL072_00015	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
AL072_00030	COG2205	protein histidine kinase activity
AL072_00040	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
AL072_00045	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
AL072_00045	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
AL072_00060	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AL072_00060	COG0357	Ribosomal RNA small subunit methyltransferase G
AL072_00065	COG4251	negative regulation of phosphorylation
AL072_00070	COG0497	DNA recombination
AL072_00075	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AL072_00080	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
AL072_00090	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
AL072_00090	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
AL072_00095	COG0243	molybdopterin cofactor binding
AL072_00125	COG4566	intracellular signal transduction
AL072_00130	COG2205	protein histidine kinase activity
AL072_00140	COG3108	Peptidase M15
AL072_00155	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AL072_00165	COG1648	precorrin-2 dehydrogenase activity
AL072_00165	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
AL072_00170	COG0175	sulfate reduction
AL072_00175	COG0175	sulfate reduction
AL072_00185	COG0488	(ABC) transporter
AL072_00210	COG2070	2-Nitropropane dioxygenase
AL072_00215	COG3706	GGDEF domain
AL072_00255	COG1410	methionine synthase
AL072_00255	COG0646	methionine synthase
AL072_00280	COG2853	Lipoprotein
AL072_00310	COG0488	(ABC) transporter
AL072_00315	COG1671	Belongs to the UPF0178 family
AL072_00320	COG0277	FAD linked oxidase domain protein
AL072_00325	COG3199	ATP-NAD kinase
AL072_00330	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
AL072_00335	COG0022	dehydrogenase e1 component
AL072_00340	COG0596	Alpha beta hydrolase
AL072_00340	COG0508	dehydrogenase complex catalyzes the overall conversion of
AL072_00350	COG1063	alcohol dehydrogenase
AL072_00355	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
AL072_00365	COG0840	transmembrane signaling receptor activity
AL072_00370	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
AL072_00375	COG2205	protein histidine kinase activity
AL072_00380	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
AL072_00385	COG2301	Belongs to the HpcH HpaI aldolase family
AL072_00395	COG0745	RESPONSE REGULATOR receiver
AL072_00430	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
AL072_00435	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
AL072_00440	COG0552	protein localization to endoplasmic reticulum
AL072_00445	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
AL072_00455	COG0121	glutamine amidotransferase
AL072_00505	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
AL072_00510	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
AL072_00525	COG5420	small protein containing a coiled-coil domain
AL072_00540	COG1385	rRNA (uridine-N3-)-methyltransferase activity
AL072_00550	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
AL072_00565	COG1573	uracil-dna glycosylase
AL072_00570	COG2154	pterin-4-alpha-carbinolamine dehydratase
AL072_00575	COG4948	Mandelate Racemase Muconate Lactonizing
AL072_00580	COG0840	transmembrane signaling receptor activity
AL072_00585	COG5278	phosphoserine phosphatase activity
AL072_00585	COG0840	transmembrane signaling receptor activity
AL072_00600	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
AL072_00605	COG2894	cell division
AL072_00610	COG0850	regulation of cytokinetic process
AL072_00615	COG1702	phosphate starvation-inducible protein PhoH
AL072_00620	COG0840	transmembrane signaling receptor activity
AL072_00625	COG1999	signal sequence binding
AL072_00635	COG0356	it plays a direct role in the translocation of protons across the membrane
AL072_00640	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
AL072_00645	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
AL072_00650	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
AL072_00655	COG3384	dioxygenase
AL072_00660	COG5002	protein histidine kinase activity
AL072_00660	COG0784	Response regulator, receiver
AL072_00665	COG0235	Class ii aldolase
AL072_00690	COG0437	4 iron, 4 sulfur cluster binding
AL072_00695	COG3383	formate dehydrogenase (NAD+) activity
AL072_00695	COG0243	molybdopterin cofactor binding
AL072_00720	COG0746	molybdenum cofactor guanylyltransferase activity
AL072_00725	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
AL072_00745	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
AL072_00750	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AL072_00765	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AL072_00780	COG0840	transmembrane signaling receptor activity
AL072_00785	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
AL072_00815	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
AL072_00825	COG0612	Peptidase, M16
AL072_00830	COG0612	Peptidase, M16
AL072_00835	COG0166	Belongs to the GPI family
AL072_00850	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
AL072_00860	COG2205	protein histidine kinase activity
AL072_00865	COG2205	protein histidine kinase activity
AL072_00870	COG2202	Pas domain
AL072_00870	COG2205	protein histidine kinase activity
AL072_00885	COG1686	Belongs to the peptidase S11 family
AL072_00910	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
AL072_00935	COG1366	Belongs to the anti-sigma-factor antagonist family
AL072_00980	COG0501	Belongs to the peptidase M48B family
AL072_00985	COG5508	conserved small protein
AL072_00995	COG0395	ABC-type sugar transport system, permease component
AL072_01010	COG2205	protein histidine kinase activity
AL072_01025	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
AL072_01035	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
AL072_01050	COG2962	Rard protein
AL072_01060	COG1902	pentaerythritol trinitrate reductase activity
AL072_01105	COG2204	response regulator
AL072_01115	COG0644	oxidoreductase
AL072_01120	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
AL072_01130	COG5002	protein histidine kinase activity
AL072_01130	COG2205	protein histidine kinase activity
AL072_01130	COG0784	Response regulator, receiver
AL072_01150	COG1663	tetraacyldisaccharide 4'-kinase activity
AL072_01155	COG1519	Transferase
AL072_01170	COG1280	lysine exporter protein (LysE YggA)
AL072_01190	COG1597	lipid kinase activity
AL072_01200	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
AL072_01205	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
AL072_01235	COG0628	permease
AL072_01245	COG2267	carboxylic ester hydrolase activity
AL072_01250	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
AL072_01255	COG2030	dehydratase
AL072_01260	COG0196	riboflavin kinase activity
AL072_01265	COG2814	Major facilitator Superfamily
AL072_01270	COG1285	pathogenesis
AL072_01320	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
AL072_01345	COG2170	ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity
AL072_01370	COG0563	adenylate kinase activity
AL072_01375	COG0201	protein transport
AL072_01380	COG0200	Binds to the 23S rRNA
AL072_01385	COG1841	ribosomal large subunit assembly
AL072_01390	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
AL072_01400	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
AL072_01405	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
AL072_01410	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
AL072_01415	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
AL072_01420	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
AL072_01430	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
AL072_01435	COG0255	Belongs to the universal ribosomal protein uL29 family
AL072_01440	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
AL072_01445	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
AL072_01450	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
AL072_01455	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
AL072_01460	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
AL072_01465	COG0089	rRNA binding
AL072_01470	COG0088	Forms part of the polypeptide exit tunnel
AL072_01475	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
AL072_01480	COG0051	transcription antitermination factor activity, RNA binding
AL072_01485	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
AL072_01495	COG0049	tRNA binding
AL072_01505	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
AL072_01510	COG0085	RNA polymerase activity
AL072_01515	COG0222	ribosome binding
AL072_01520	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
AL072_01525	COG0081	regulation of translation
AL072_01530	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
AL072_01550	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
AL072_01610	COG0411	ABC transporter
AL072_01640	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AL072_01645	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AL072_01680	COG1940	carbohydrate kinase activity
AL072_01730	COG1530	ribonuclease E activity
AL072_01740	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
AL072_01745	COG0598	Magnesium transport protein CorA
AL072_01755	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
AL072_01765	COG0218	Necessary for normal cell division and for the maintenance of normal septation
AL072_01770	COG0706	membrane insertase activity
AL072_01775	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
AL072_01785	COG0230	Belongs to the bacterial ribosomal protein bL34 family
AL072_01790	COG0335	large ribosomal subunit rRNA binding
AL072_01800	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
AL072_01805	COG0228	four-way junction DNA binding
AL072_01810	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
AL072_01850	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AL072_01870	COG1960	acyl-CoA dehydrogenase activity
AL072_01880	COG1454	alcohol dehydrogenase
AL072_01900	COG0247	lactate metabolic process
AL072_01905	COG0277	FAD linked oxidase domain protein
AL072_01910	COG0277	FAD linked oxidase domain protein
AL072_01915	COG0257	Belongs to the bacterial ribosomal protein bL36 family
AL072_01935	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
AL072_01940	COG0745	RESPONSE REGULATOR receiver
AL072_01960	COG3108	Peptidase M15
AL072_01965	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
AL072_01985	COG4191	Histidine kinase
AL072_01995	COG4106	trans-aconitate 2-methyltransferase activity
AL072_02010	COG0126	phosphoglycerate kinase activity
AL072_02020	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
AL072_02030	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AL072_02040	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
AL072_02045	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
AL072_02060	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
AL072_02085	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
AL072_02090	COG0640	Transcriptional regulator
AL072_02100	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
AL072_02210	COG1546	Belongs to the CinA family
AL072_02210	COG1058	Belongs to the CinA family
AL072_02215	COG1489	DNA binding
AL072_02220	COG0024	Methionine aminopeptidase
AL072_02240	COG0514	ATP-dependent DNA helicase (RecQ)
AL072_02245	COG0494	nUDIX hydrolase
AL072_02250	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
AL072_02255	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AL072_02260	COG0653	protein targeting
AL072_02285	COG0640	Transcriptional regulator
AL072_02295	COG1384	Belongs to the class-I aminoacyl-tRNA synthetase family
AL072_02315	COG0039	L-malate dehydrogenase activity
AL072_02320	COG0045	succinate-CoA ligase (ADP-forming) activity
AL072_02325	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
AL072_02350	COG4191	Histidine kinase
AL072_02385	COG1643	Atp-dependent helicase
AL072_02390	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
AL072_02390	COG0574	Belongs to the PEP-utilizing enzyme family
AL072_02400	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AL072_02410	COG0539	negative regulation of cytoplasmic translation
AL072_02515	COG4372	Transposase
AL072_02525	COG2433	Pfam Transposase IS66
AL072_02530	COG3436	PFAM IS66 Orf2 family protein
AL072_02555	COG3436	PFAM IS66 Orf2 family protein
AL072_02585	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
AL072_02590	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
AL072_02605	COG3177	Filamentation induced by cAMP protein fic
AL072_02660	COG0433	COG0433 Predicted ATPase
AL072_02700	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
AL072_02700	COG2755	lipolytic protein G-D-S-L family
AL072_02710	COG1238	metal cluster binding
AL072_02715	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AL072_02725	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AL072_02735	COG1674	ftsk spoiiie
AL072_02740	COG2318	DinB family
AL072_02750	COG2205	protein histidine kinase activity
AL072_02775	COG0243	molybdopterin cofactor binding
AL072_02785	COG3005	denitrification pathway
AL072_02805	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
AL072_02810	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
AL072_02820	COG1522	sequence-specific DNA binding
AL072_02825	COG3660	Nucleoside-diphosphate-sugar epimerase
AL072_02840	COG1793	dna ligase
AL072_02850	COG2313	pseudouridylate synthase activity
AL072_02865	COG0753	catalase activity
AL072_02875	COG1741	Belongs to the pirin family
AL072_02880	COG0004	ammonium transporteR
AL072_02885	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
AL072_02890	COG0297	glycogen (starch) synthase activity
AL072_02915	COG0252	asparaginase activity
AL072_02925	COG0583	DNA-binding transcription factor activity
AL072_02935	COG0784	Response regulator, receiver
AL072_02935	COG3437	response regulator, receiver
AL072_02950	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
AL072_02955	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
AL072_02960	COG0291	Belongs to the bacterial ribosomal protein bL35 family
AL072_02970	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
AL072_02980	COG1187	pseudouridine synthase activity
AL072_02985	COG1960	acyl-CoA dehydrogenase activity
AL072_02995	COG2086	electron transfer activity
AL072_03000	COG0318	PFAM AMP-dependent synthetase and ligase
AL072_03015	COG3162	membrane
AL072_03020	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AL072_03030	COG2205	protein histidine kinase activity
AL072_03030	COG2202	Pas domain
AL072_03050	COG0247	lactate metabolic process
AL072_03055	COG1592	Rubrerythrin
AL072_03075	COG1509	lysine 2,3-aminomutase activity
AL072_03150	COG0745	RESPONSE REGULATOR receiver
AL072_03160	COG1234	tRNA 3'-trailer cleavage
AL072_03205	COG1715	Restriction endonuclease
AL072_03235	COG2944	sequence-specific DNA binding
AL072_03255	COG0587	DNA-directed DNA polymerase activity
AL072_03265	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
AL072_03430	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
AL072_03440	COG1715	Restriction endonuclease
AL072_03460	COG1872	DUF167
AL072_03465	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
AL072_03470	COG0598	Magnesium transport protein CorA
AL072_03485	COG0039	L-malate dehydrogenase activity
AL072_03500	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
AL072_03510	COG2154	pterin-4-alpha-carbinolamine dehydratase
AL072_03520	COG1573	uracil-dna glycosylase
AL072_03525	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
AL072_03530	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
AL072_03535	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AL072_03550	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
AL072_03555	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
AL072_03565	COG0251	oxidation-reduction process
AL072_03570	COG1309	transcriptional regulator
AL072_03590	COG2223	nitrite transmembrane transporter activity
AL072_03610	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
AL072_03610	COG0517	IMP dehydrogenase activity
AL072_03625	COG1137	ATPase activity
AL072_03630	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
AL072_03635	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
AL072_03640	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
AL072_03645	COG4636	protein conserved in cyanobacteria
AL072_03655	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
AL072_03665	COG2070	2-Nitropropane dioxygenase
AL072_03685	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
AL072_03690	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
AL072_03700	COG2852	Protein conserved in bacteria
AL072_03705	COG2890	protein-(glutamine-N5) methyltransferase activity
AL072_03720	COG0494	nUDIX hydrolase
AL072_03725	COG0542	response to heat
AL072_03730	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
AL072_03760	COG3162	membrane
AL072_03780	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AL072_03790	COG1040	competence protein
AL072_03820	COG5001	Diguanylate cyclase
AL072_03830	COG1473	amidohydrolase
AL072_03835	COG0625	glutathione transferase activity
AL072_03840	COG3813	Protein conserved in bacteria
AL072_03845	COG0784	Response regulator, receiver
AL072_03845	COG3437	response regulator, receiver
AL072_03860	COG0820	rRNA (adenine-C2-)-methyltransferase activity
AL072_03900	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
AL072_03910	COG1024	Enoyl-CoA hydratase
AL072_03915	COG0268	Binds directly to 16S ribosomal RNA
AL072_03920	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
AL072_03925	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
AL072_03930	COG3842	ATPase activity
AL072_03955	COG0745	RESPONSE REGULATOR receiver
AL072_03965	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
AL072_03985	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
AL072_03990	COG2264	protein methyltransferase activity
AL072_03995	COG2270	Major facilitator Superfamily
AL072_04015	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
AL072_04070	COG0285	dihydrofolate synthase activity
AL072_04075	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
AL072_04095	COG0133	tryptophan synthase activity
AL072_04100	COG0784	Response regulator, receiver
AL072_04100	COG2205	protein histidine kinase activity
AL072_04105	COG1278	Cold shock
AL072_04110	COG2204	response regulator
AL072_04115	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
AL072_04120	COG0756	dUTP diphosphatase activity
AL072_04125	COG0784	Response regulator, receiver
AL072_04125	COG5002	protein histidine kinase activity
AL072_04125	COG2205	protein histidine kinase activity
AL072_04130	COG2205	protein histidine kinase activity
AL072_04140	COG4974	Belongs to the 'phage' integrase family
AL072_04155	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
AL072_04180	COG0271	Belongs to the BolA IbaG family
AL072_04200	COG2114	Pfam Adenylate and Guanylate cyclase catalytic domain
AL072_04205	COG0501	Belongs to the peptidase M48B family
AL072_04220	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
AL072_04225	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
AL072_04230	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
AL072_04230	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AL072_04235	COG1660	Displays ATPase and GTPase activities
AL072_04250	COG0642	Histidine kinase
AL072_04255	COG0745	RESPONSE REGULATOR receiver
AL072_04265	COG1274	phosphoenolpyruvate carboxykinase (GTP) activity
AL072_04315	COG4957	zinc ion binding
AL072_04335	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
AL072_04355	COG0443	Heat shock 70 kDa protein
AL072_04365	COG3706	GGDEF domain
AL072_04370	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
AL072_04375	COG0667	Aldo Keto reductase
AL072_04390	COG4181	ATPase activity
AL072_04400	COG0670	Belongs to the BI1 family
AL072_04410	COG0745	RESPONSE REGULATOR receiver
AL072_04415	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
AL072_04425	COG0573	inorganic phosphate transmembrane transporter activity
AL072_04430	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
AL072_04435	COG5002	protein histidine kinase activity
AL072_04450	COG0281	malic enzyme
AL072_04450	COG0280	phosphate acetyltransferase
AL072_04455	COG2814	Major facilitator Superfamily
AL072_04460	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
AL072_04465	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
AL072_04470	COG0635	Involved in the biosynthesis of porphyrin-containing compound
AL072_04480	COG1475	DNA binding
AL072_04485	COG1192	Involved in chromosome partitioning
AL072_04490	COG0357	Ribosomal RNA small subunit methyltransferase G
AL072_04495	COG0445	tRNA wobble uridine modification
AL072_04500	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
AL072_04515	COG1331	Highly conserved protein containing a thioredoxin domain
AL072_04520	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
AL072_04530	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AL072_04560	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
AL072_04570	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
AL072_04575	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
AL072_04585	COG4395	Tim44
AL072_04590	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
AL072_04595	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
AL072_04655	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
AL072_04660	COG4235	cytochrome complex assembly
AL072_04665	COG3088	subunit of a heme lyase
AL072_04670	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AL072_04675	COG1138	Cytochrome C-type biogenesis protein
AL072_04680	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
AL072_04690	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
AL072_04710	COG1028	Short-chain dehydrogenase reductase Sdr
AL072_04715	COG1185	polyribonucleotide nucleotidyltransferase activity
AL072_04720	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
AL072_04725	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
AL072_04730	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
AL072_04750	COG0779	Required for maturation of 30S ribosomal subunits
AL072_04755	COG2329	Antibiotic biosynthesis monooxygenase
AL072_04760	COG0220	tRNA (guanine-N7-)-methyltransferase activity
AL072_04765	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
AL072_04770	COG1396	sequence-specific DNA binding
AL072_04775	COG0815	Transfers the fatty acyl group on membrane lipoproteins
AL072_04780	COG1253	flavin adenine dinucleotide binding
AL072_04790	COG1702	phosphate starvation-inducible protein PhoH
AL072_04795	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
AL072_04805	COG2967	ApaG domain
AL072_04810	COG0302	gtp cyclohydrolase
AL072_04815	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
AL072_04825	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
AL072_04830	COG0668	transmembrane transport
AL072_04845	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
AL072_04860	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
AL072_04865	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AL072_04880	COG0730	response to heat
AL072_04895	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
AL072_04905	COG0745	RESPONSE REGULATOR receiver
AL072_04915	COG1420	regulation of RNA biosynthetic process
AL072_04925	COG0606	chelatase, subunit chli
AL072_04955	COG0180	Tryptophanyl-tRNA synthetase
AL072_04970	COG0189	ligase activity
AL072_04980	COG0792	nuclease activity
AL072_04985	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
AL072_05020	COG4133	protoheme IX ABC transporter activity
AL072_05025	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
AL072_05030	COG0386	Belongs to the glutathione peroxidase family
AL072_05045	COG0739	heme binding
AL072_05095	COG2205	protein histidine kinase activity
AL072_05100	COG0745	RESPONSE REGULATOR receiver
AL072_05110	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AL072_05110	COG0785	Cytochrome C biogenesis protein
AL072_05115	COG1846	Transcriptional regulator
AL072_05125	COG0187	DNA topoisomerase II activity
AL072_05130	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
AL072_05135	COG0592	DNA-directed DNA polymerase activity
AL072_05160	COG1074	ATP-dependent DNA helicase activity
AL072_05165	COG2887	Belongs to the helicase family. UvrD subfamily
AL072_05170	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
AL072_05180	COG0802	atpase or kinase
AL072_05205	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AL072_05215	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
AL072_05235	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
AL072_05310	COG3585	molybdate ion transport
AL072_05315	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
AL072_05320	COG0840	transmembrane signaling receptor activity
AL072_05330	COG0783	Belongs to the Dps family
AL072_05340	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
AL072_05365	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AL072_05380	COG0776	regulation of translation
AL072_05390	COG2423	ornithine cyclodeaminase activity
AL072_05425	COG0137	argininosuccinate synthase activity
AL072_05450	COG1272	protein, Hemolysin III
AL072_05465	COG0583	DNA-binding transcription factor activity
AL072_05470	COG0477	Major facilitator Superfamily
AL072_05475	COG1024	Enoyl-CoA hydratase
AL072_05485	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
AL072_05485	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
AL072_05495	COG0138	bifunctional purine biosynthesis protein purh
AL072_05500	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
AL072_05515	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
AL072_05520	COG0583	DNA-binding transcription factor activity
AL072_05535	COG0861	Integral membrane protein TerC family
AL072_05540	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
AL072_05550	COG0635	Involved in the biosynthesis of porphyrin-containing compound
AL072_05585	COG0840	transmembrane signaling receptor activity
AL072_05590	COG5265	(ABC) transporter
AL072_05605	COG0135	phosphoribosylanthranilate isomerase activity
AL072_05610	COG0745	RESPONSE REGULATOR receiver
AL072_05610	COG3706	GGDEF domain
AL072_05615	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
AL072_05625	COG0156	8-amino-7-oxononanoate synthase activity
AL072_05640	COG1176	ABC-type spermidine putrescine transport system, permease component I
AL072_05645	COG1177	transmembrane transport
AL072_05665	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
AL072_05675	COG3278	Belongs to the heme-copper respiratory oxidase family
AL072_05705	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AL072_05710	COG1612	heme a metabolic process
AL072_05715	COG3772	lysozyme
AL072_05725	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
AL072_05730	COG0459	protein refolding
AL072_05745	COG4566	intracellular signal transduction
AL072_05765	COG0583	DNA-binding transcription factor activity
AL072_05800	COG0444	Belongs to the ABC transporter superfamily
AL072_05810	COG0601	transmembrane transport
AL072_05815	COG0492	ferredoxin-NADP+ reductase activity
AL072_05825	COG1695	Transcriptional regulator
AL072_05840	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
AL072_05850	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
AL072_05865	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
AL072_05870	COG1595	DNA-templated transcription, initiation
AL072_05895	COG2202	Pas domain
AL072_05895	COG2205	protein histidine kinase activity
AL072_05940	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
AL072_05945	COG0825	malonyl-CoA metabolic process
AL072_05955	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
AL072_05960	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
AL072_05965	COG1842	Phage shock protein A
AL072_05985	COG1216	Glycosyl transferase, family 2
AL072_05985	COG1442	glycosyl transferase family 8
AL072_06015	COG0181	hydroxymethylbilane synthase activity
AL072_06030	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
AL072_06045	COG0587	DNA-directed DNA polymerase activity
AL072_06060	COG0784	Response regulator, receiver
AL072_06060	COG3437	response regulator, receiver
AL072_06065	COG3158	transport of potassium into the cell
AL072_06070	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AL072_06080	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
AL072_06085	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
AL072_06090	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AL072_06095	COG0842	Transport permease protein
AL072_06100	COG2137	regulation of response to DNA damage stimulus
AL072_06105	COG0227	Belongs to the bacterial ribosomal protein bL28 family
AL072_06115	COG1703	isobutyryl-CoA mutase activity
AL072_06120	COG4172	Belongs to the ABC transporter superfamily
AL072_06125	COG4239	(ABC) transporter, permease
AL072_06130	COG4174	ABC transporter (Permease)
AL072_06135	COG4166	transmembrane transport
AL072_06140	COG4166	transmembrane transport
AL072_06175	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
AL072_06180	COG3474	cytochrome
AL072_06190	COG2201	protein-glutamate methylesterase activity
AL072_06195	COG2766	serine protein kinase
AL072_06200	COG2718	Belongs to the UPF0229 family
AL072_06205	COG2719	SpoVR family
AL072_06210	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
AL072_06225	COG0318	PFAM AMP-dependent synthetase and ligase
AL072_06230	COG1254	Belongs to the acylphosphatase family
AL072_06260	COG2022	thiamine diphosphate biosynthetic process
AL072_06260	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AL072_06270	COG2022	thiamine diphosphate biosynthetic process
AL072_06395	COG3119	arylsulfatase activity
AL072_06405	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AL072_06410	COG4974	Belongs to the 'phage' integrase family
AL072_06420	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
AL072_06440	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
AL072_06450	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
AL072_06475	COG0513	Belongs to the DEAD box helicase family
AL072_06480	COG2032	superoxide dismutase activity
AL072_06545	COG0167	dihydroorotate dehydrogenase activity
AL072_06565	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
AL072_06570	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
AL072_06585	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AL072_06600	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
AL072_06610	COG0840	transmembrane signaling receptor activity
AL072_06615	COG2871	sodium ion transport
AL072_06625	COG3327	negative regulation of DNA-templated transcription, initiation
AL072_06635	COG0559	Belongs to the binding-protein-dependent transport system permease family
AL072_06650	COG0410	ABC transporter
AL072_06655	COG0625	glutathione transferase activity
AL072_06680	COG1278	Cold shock
AL072_06700	COG0586	Pfam SNARE associated Golgi protein
AL072_06710	COG2885	chlorophyll binding
AL072_06725	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
AL072_06735	COG2205	protein histidine kinase activity
AL072_06745	COG2350	Protein conserved in bacteria
AL072_06765	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
AL072_06775	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AL072_06790	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
AL072_06805	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AL072_06815	COG3279	Response regulator of the LytR AlgR family
AL072_06830	COG0784	Response regulator, receiver
AL072_06830	COG2205	protein histidine kinase activity
AL072_06830	COG5002	protein histidine kinase activity
AL072_06835	COG2203	Gaf domain
AL072_06835	COG3706	GGDEF domain
AL072_06835	COG4251	negative regulation of phosphorylation
AL072_06835	COG5001	Diguanylate cyclase
AL072_06850	COG1595	DNA-templated transcription, initiation
AL072_06865	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
AL072_06870	COG2084	Dehydrogenase
AL072_06880	COG0679	Auxin Efflux Carrier
AL072_06890	COG2972	Histidine kinase
AL072_06890	COG0840	transmembrane signaling receptor activity
AL072_06895	COG1199	ATP-dependent helicase activity
AL072_06895	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AL072_06900	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AL072_06910	COG0513	Belongs to the DEAD box helicase family
AL072_06925	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
AL072_06930	COG0242	peptide deformylase activity
AL072_06935	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
AL072_06940	COG0101	tRNA pseudouridine synthase activity
AL072_06950	COG0583	DNA-binding transcription factor activity
AL072_06960	COG0747	negative chemotaxis
AL072_06965	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
AL072_06970	COG0559	Belongs to the binding-protein-dependent transport system permease family
AL072_06975	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
AL072_06980	COG0277	FAD linked oxidase domain protein
AL072_06985	COG0009	L-threonylcarbamoyladenylate synthase
AL072_06990	COG1192	Involved in chromosome partitioning
AL072_07000	COG2193	ferroxidase activity
AL072_07015	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
AL072_07020	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
AL072_07030	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
AL072_07045	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
AL072_07050	COG0328	RNA-DNA hybrid ribonuclease activity
AL072_07050	COG0406	alpha-ribazole phosphatase activity
AL072_07055	COG1902	pentaerythritol trinitrate reductase activity
AL072_07060	COG1278	Cold shock
AL072_07105	COG1028	Short-chain dehydrogenase reductase Sdr
AL072_07120	COG1322	Protein conserved in bacteria
AL072_07125	COG0840	transmembrane signaling receptor activity
AL072_07145	COG0071	Belongs to the small heat shock protein (HSP20) family
AL072_07150	COG0579	oxidoreductase
AL072_07155	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
AL072_07160	COG0745	RESPONSE REGULATOR receiver
AL072_07160	COG3706	GGDEF domain
AL072_07175	COG1366	Belongs to the anti-sigma-factor antagonist family
AL072_07180	COG0840	transmembrane signaling receptor activity
AL072_07185	COG2201	protein-glutamate methylesterase activity
AL072_07190	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
AL072_07200	COG0840	transmembrane signaling receptor activity
AL072_07205	COG0835	chemotaxis
AL072_07210	COG0643	Histidine kinase
AL072_07210	COG2198	Histidine kinase
AL072_07215	COG0745	RESPONSE REGULATOR receiver
AL072_07225	COG1051	belongs to the nudix hydrolase family
AL072_07240	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
AL072_07245	COG0799	negative regulation of ribosome biogenesis
AL072_07250	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
AL072_07255	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
AL072_07260	COG4942	peptidase
AL072_07265	COG0793	Belongs to the peptidase S41A family
AL072_07275	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AL072_07285	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
AL072_07290	COG0211	Belongs to the bacterial ribosomal protein bL27 family
AL072_07295	COG0261	This protein binds to 23S rRNA in the presence of protein L20
AL072_07310	COG0071	Belongs to the small heat shock protein (HSP20) family
AL072_07320	COG0254	rRNA binding
AL072_07325	COG1132	(ABC) transporter
AL072_07330	COG0842	Transport permease protein
AL072_07335	COG3770	Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus
AL072_07370	COG5394	Polyhydroxyalkanoate synthesis repressor PhaR
AL072_07375	COG3243	poly(R)-hydroxyalkanoic acid synthase
AL072_07380	COG0183	Belongs to the thiolase family
AL072_07385	COG1028	Short-chain dehydrogenase reductase Sdr
AL072_07390	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
AL072_07400	COG2835	tetraacyldisaccharide 4'-kinase activity
AL072_07410	COG3118	belongs to the thioredoxin family
AL072_07425	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
AL072_07435	COG0840	transmembrane signaling receptor activity
AL072_07450	COG0463	Glycosyl transferase, family 2
AL072_07460	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
AL072_07490	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
AL072_07500	COG1846	Transcriptional regulator
AL072_07520	COG0312	modulator of DNA gyrase
AL072_07525	COG0004	ammonium transporteR
AL072_07530	COG0047	phosphoribosylformylglycinamidine synthase activity
AL072_07535	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
AL072_07565	COG0751	glycine-tRNA ligase activity
AL072_07570	COG0752	glycyl-tRNA synthetase alpha subunit
AL072_07615	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
AL072_07625	COG3852	Histidine kinase
AL072_07630	COG4191	Histidine kinase
AL072_07635	COG5002	protein histidine kinase activity
AL072_07645	COG2176	DNA-directed DNA polymerase activity
AL072_07645	COG5002	protein histidine kinase activity
AL072_07650	COG0745	RESPONSE REGULATOR receiver
AL072_07660	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
AL072_07680	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
AL072_07705	COG5554	nitrogen fixation
AL072_07720	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
AL072_07750	COG1131	(ABC) transporter
AL072_07765	COG0784	Response regulator, receiver
AL072_07765	COG4191	Histidine kinase
AL072_07795	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
AL072_07830	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
AL072_07835	COG1346	cytolysis
AL072_07840	COG1380	Effector of murein hydrolase LrgA
AL072_07855	COG1262	PFAM Formylglycine-generating sulfatase enzyme
AL072_07860	COG0267	Belongs to the bacterial ribosomal protein bL33 family
AL072_07865	COG0793	Belongs to the peptidase S41A family
AL072_07870	COG0557	exoribonuclease II activity
AL072_07880	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
AL072_07915	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
AL072_07935	COG0717	Belongs to the dCTP deaminase family
AL072_07940	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
AL072_07955	COG0693	protein deglycase activity
AL072_07960	COG2197	response regulator
AL072_07965	COG2197	response regulator
AL072_07970	COG0829	nickel cation binding
AL072_07975	COG0831	urea catabolic process
AL072_07980	COG0832	Belongs to the urease beta subunit family
AL072_07985	COG0804	urea catabolic process
AL072_07990	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
AL072_07995	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
AL072_08000	COG0830	nickel cation binding
AL072_08005	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
AL072_08020	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
AL072_08035	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
AL072_08040	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AL072_08045	COG0028	Belongs to the TPP enzyme family
AL072_08060	COG0768	penicillin binding
AL072_08080	COG2862	Uncharacterized protein family, UPF0114
AL072_08085	COG0704	Plays a role in the regulation of phosphate uptake
AL072_08090	COG0140	phosphoribosyl-ATP diphosphatase activity
AL072_08095	COG0500	methyltransferase
AL072_08185	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AL072_08190	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AL072_08195	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AL072_08200	COG0649	NAD binding
AL072_08205	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
AL072_08215	COG1034	ATP synthesis coupled electron transport
AL072_08220	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
AL072_08235	COG0713	ATP synthesis coupled electron transport
AL072_08250	COG1007	ATP synthesis coupled electron transport
AL072_08280	COG0519	Catalyzes the synthesis of GMP from XMP
AL072_08295	COG0442	prolyl-tRNA aminoacylation
AL072_08305	COG1136	(ABC) transporter
AL072_08315	COG1335	isochorismatase
AL072_08320	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
AL072_08325	COG0564	pseudouridine synthase activity
AL072_08330	COG0546	phosphoglycolate phosphatase activity
AL072_08345	COG0354	folic acid binding
AL072_08420	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
AL072_08425	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
AL072_08435	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
AL072_08440	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
AL072_08450	COG0248	Ppx GppA phosphatase
AL072_08470	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
AL072_08485	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
AL072_08490	COG0849	cell division
AL072_08495	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
AL072_08500	COG1181	Belongs to the D-alanine--D-alanine ligase family
AL072_08505	COG0812	UDP-N-acetylmuramate dehydrogenase activity
AL072_08510	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
AL072_08520	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
AL072_08530	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
AL072_08545	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
AL072_08565	COG2001	Belongs to the MraZ family
AL072_08570	COG3023	N-Acetylmuramoyl-L-alanine amidase
AL072_08605	COG3284	Transcriptional regulator
AL072_08610	COG3706	GGDEF domain
AL072_08645	COG3436	PFAM IS66 Orf2 family protein
AL072_08650	COG4372	Transposase
AL072_08680	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
AL072_08755	COG0482	sulfurtransferase activity
AL072_08765	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
AL072_08770	COG1104	cysteine desulfurase activity
AL072_08785	COG2945	thiolester hydrolase activity
AL072_08820	COG0583	DNA-binding transcription factor activity
AL072_08830	COG5001	Diguanylate cyclase
AL072_08830	COG3300	MHYT domain
AL072_08840	COG0193	aminoacyl-tRNA hydrolase activity
AL072_08845	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
AL072_08855	COG0124	histidyl-tRNA synthetase
AL072_08865	COG0418	dihydroorotase activity
AL072_08870	COG0457	Tetratricopeptide repeat
AL072_08870	COG0859	PFAM glycosyl transferase family 9
AL072_08875	COG1570	exodeoxyribonuclease VII activity
AL072_08890	COG0590	tRNA wobble adenosine to inosine editing
AL072_08895	COG1187	pseudouridine synthase activity
AL072_08900	COG0742	ribosomal rna small subunit methyltransferase
AL072_08925	COG2910	NAD(P)H-binding
AL072_08940	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
AL072_08970	COG2197	response regulator
AL072_08975	COG2197	response regulator
AL072_08980	COG0210	DNA helicase
AL072_08990	COG2264	protein methyltransferase activity
AL072_09000	COG0006	proline dipeptidase activity
AL072_09005	COG0745	RESPONSE REGULATOR receiver
AL072_09025	COG0612	Peptidase, M16
AL072_09030	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AL072_09050	COG0483	inositol monophosphate 1-phosphatase activity
AL072_09055	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
AL072_09070	COG0730	response to heat
AL072_09075	COG0352	thiamine-phosphate diphosphorylase activity
AL072_09080	COG1830	Aldolase
AL072_09100	COG0840	transmembrane signaling receptor activity
AL072_09125	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
AL072_09130	COG1692	metallophosphoesterase
AL072_09135	COG0217	transcriptional regulatory protein
AL072_09145	COG0632	four-way junction helicase activity
AL072_09150	COG2255	four-way junction helicase activity
AL072_09155	COG0824	Thioesterase
AL072_09165	COG0848	biopolymer transport protein
AL072_09190	COG0037	tRNA processing
AL072_09195	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AL072_09205	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
AL072_09210	COG1295	ribonuclease BN
AL072_09215	COG3152	Membrane
AL072_09230	COG0259	pyridoxamine-phosphate oxidase activity
AL072_09240	COG0840	transmembrane signaling receptor activity
AL072_09250	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
AL072_09255	COG2770	Histidine kinase
AL072_09255	COG3437	response regulator, receiver
AL072_09260	COG0409	Hydrogenase expression formation protein
AL072_09270	COG0840	transmembrane signaling receptor activity
AL072_09290	COG3685	Protein conserved in bacteria
AL072_09305	COG4957	zinc ion binding
AL072_09310	COG0698	ribose 5-phosphate isomerase
AL072_09315	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
AL072_09320	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
AL072_09325	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
AL072_09340	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
AL072_09345	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
AL072_09350	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
AL072_09350	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
AL072_09360	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AL072_09360	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AL072_09380	COG0333	Belongs to the bacterial ribosomal protein bL32 family
AL072_09385	COG0416	fatty acid biosynthetic process
AL072_09520	COG0582	viral genome integration into host DNA
AL072_09560	COG0582	viral genome integration into host DNA
AL072_09725	COG1764	response to oxidative stress
AL072_09730	COG1846	Transcriptional regulator
AL072_09735	COG0456	acetyltransferase
AL072_09745	COG2890	protein-(glutamine-N5) methyltransferase activity
AL072_09750	COG1393	Belongs to the ArsC family
AL072_09755	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
AL072_09765	COG1403	HNH endonuclease
AL072_09785	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
AL072_09830	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
AL072_09865	COG3108	Peptidase M15
AL072_09890	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
AL072_09895	COG0511	ligase activity, forming carbon-carbon bonds
AL072_09900	COG0439	Biotin carboxylase
AL072_09910	COG0840	transmembrane signaling receptor activity
AL072_09920	COG0745	RESPONSE REGULATOR receiver
AL072_09940	COG0432	Pfam Uncharacterised protein family UPF0047
AL072_09950	COG0745	RESPONSE REGULATOR receiver
AL072_09955	COG2205	protein histidine kinase activity
AL072_09960	COG0628	permease
AL072_09970	COG0616	signal peptide processing
AL072_09980	COG0745	RESPONSE REGULATOR receiver
AL072_09990	COG0436	Aminotransferase
AL072_10000	COG1494	fructose-1,6-bisphosphatase
AL072_10010	COG2205	protein histidine kinase activity
AL072_10020	COG1324	tolerance protein
AL072_10025	COG0303	'Molybdopterin
AL072_10030	COG0583	DNA-binding transcription factor activity
AL072_10045	COG2373	Large extracellular alpha-helical protein
AL072_10050	COG4953	penicillin-binding protein 1C
AL072_10060	COG2132	Multicopper oxidase
AL072_10070	COG1914	H( )-stimulated, divalent metal cation uptake system
AL072_10120	COG0604	alcohol dehydrogenase
AL072_10130	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
AL072_10130	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AL072_10140	COG0583	DNA-binding transcription factor activity
AL072_10145	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
AL072_10150	COG3800	Transcriptional regulator
AL072_10150	COG1396	sequence-specific DNA binding
AL072_10185	COG0747	negative chemotaxis
AL072_10190	COG0601	transmembrane transport
AL072_10195	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AL072_10200	COG0444	Belongs to the ABC transporter superfamily
AL072_10205	COG1124	(ABC) transporter
AL072_10220	COG0583	DNA-binding transcription factor activity
AL072_10225	COG0519	Catalyzes the synthesis of GMP from XMP
AL072_10225	COG0518	GMP synthase (glutamine-hydrolyzing) activity
AL072_10230	COG1247	-acetyltransferase
AL072_10240	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AL072_10245	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
AL072_10255	COG1758	RNA polymerase activity
AL072_10265	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
AL072_10270	COG0736	holo-[acyl-carrier-protein] synthase activity
AL072_10275	COG0681	Belongs to the peptidase S26 family
AL072_10280	COG0571	ribonuclease III activity
AL072_10285	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
AL072_10300	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
AL072_10310	COG1752	Esterase of the alpha-beta hydrolase superfamily
AL072_10325	COG1360	Flagellar Motor Protein
AL072_10335	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
AL072_10345	COG1338	Plays a role in the flagellum-specific transport system
AL072_10360	COG2257	FlhB HrpN YscU SpaS Family
AL072_10365	COG1815	bacterial-type flagellum-dependent cell motility
AL072_10370	COG1558	bacterial-type flagellum-dependent cell motility
AL072_10375	COG1677	Flagellar hook-basal body complex protein FliE
AL072_10380	COG1987	bacterial-type flagellum assembly
AL072_10390	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
AL072_10430	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
AL072_10440	COG2076	Multidrug Resistance protein
AL072_10460	COG0312	modulator of DNA gyrase
AL072_10485	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
AL072_10495	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
AL072_10500	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
AL072_10545	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
AL072_10550	COG1032	radical SAM domain protein
AL072_10565	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
AL072_10575	COG4786	Flagellar basal body rod
AL072_10580	COG4786	Flagellar basal body rod
AL072_10605	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
AL072_10610	COG1381	Involved in DNA repair and RecF pathway recombination
AL072_10640	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
AL072_10645	COG0321	lipoyl(octanoyl) transferase activity
AL072_10645	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
AL072_10650	COG0084	hydrolase, TatD family'
AL072_10655	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AL072_10660	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
AL072_10665	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
AL072_10670	COG1686	Belongs to the peptidase S11 family
AL072_10715	COG3932	Exopolysaccharide synthesis, ExoD
AL072_10720	COG0488	(ABC) transporter
AL072_10725	COG0105	UTP biosynthetic process
AL072_10765	COG2815	serine threonine protein kinase
AL072_10765	COG0515	serine threonine protein kinase
AL072_10790	COG0500	methyltransferase
AL072_10860	COG3501	Rhs element vgr protein
AL072_10910	COG2208	phosphoserine phosphatase activity
AL072_10910	COG2770	Histidine kinase
AL072_10915	COG1366	Belongs to the anti-sigma-factor antagonist family
AL072_10950	COG4191	Histidine kinase
AL072_10960	COG0467	Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction
AL072_10970	COG2972	Histidine kinase
AL072_10970	COG0840	transmembrane signaling receptor activity
AL072_11000	COG2951	lytic endotransglycosylase activity
AL072_11025	COG0114	fumarate hydratase activity
AL072_11045	COG5001	Diguanylate cyclase
AL072_11050	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
AL072_11055	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
AL072_11070	COG0205	6-phosphofructokinase activity
AL072_11095	COG0288	reversible hydration of carbon dioxide
AL072_11110	COG0604	alcohol dehydrogenase
AL072_11110	COG1028	Short-chain dehydrogenase reductase Sdr
AL072_11110	COG3321	synthase
AL072_11170	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AL072_11175	COG0840	transmembrane signaling receptor activity
AL072_11185	COG2197	response regulator
AL072_11200	COG1160	GTP binding
AL072_11215	COG0024	Methionine aminopeptidase
AL072_11230	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
AL072_11235	COG4221	oxidoreductase activity
AL072_11245	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
AL072_11275	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AL072_11295	COG2814	Major facilitator Superfamily
AL072_11315	COG3706	GGDEF domain
AL072_11325	COG0473	3-isopropylmalate dehydrogenase activity
AL072_11350	COG0330	HflC and HflK could
AL072_11360	COG0538	isocitrate dehydrogenase activity
AL072_11365	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
AL072_11370	COG0359	binds to the 23S rRNA
AL072_11380	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
AL072_11385	COG0360	Binds together with S18 to 16S ribosomal RNA
AL072_11410	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
AL072_11415	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
AL072_11430	COG1733	regulation of RNA biosynthetic process
AL072_11435	COG1028	Short-chain dehydrogenase reductase Sdr
AL072_11440	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
AL072_11470	COG0140	phosphoribosyl-ATP diphosphatase activity
AL072_11480	COG3437	response regulator, receiver
AL072_11480	COG0784	Response regulator, receiver
AL072_11510	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AL072_11515	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AL072_11525	COG1607	acyl-coa hydrolase
AL072_11530	COG0187	DNA topoisomerase II activity
AL072_11550	COG0513	Belongs to the DEAD box helicase family
AL072_11570	COG0840	transmembrane signaling receptor activity
AL072_11585	COG1561	YicC-like family, N-terminal region
AL072_11590	COG4221	oxidoreductase activity
AL072_11600	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
AL072_11605	COG0303	'Molybdopterin
AL072_11610	COG0315	cyclic pyranopterin monophosphate synthase activity
AL072_11660	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AL072_11665	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
AL072_11670	COG2813	Specifically methylates the guanine in position
AL072_11675	COG0667	Aldo Keto reductase
AL072_11690	COG1881	PFAM PEBP family protein
AL072_11695	COG0113	porphobilinogen synthase activity
AL072_11700	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
AL072_11710	COG1024	Enoyl-CoA hydratase
AL072_11715	COG1846	Transcriptional regulator
AL072_11730	COG0559	Belongs to the binding-protein-dependent transport system permease family
AL072_11745	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
AL072_11770	COG1028	Short-chain dehydrogenase reductase Sdr
AL072_11785	COG0058	SHG alpha-glucan phosphorylase activity
AL072_11790	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
AL072_11800	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
AL072_11805	COG4191	Histidine kinase
AL072_11810	COG0745	RESPONSE REGULATOR receiver
AL072_11820	COG2308	Evidence 4 Homologs of previously reported genes of
AL072_11820	COG2307	Protein conserved in bacteria
AL072_11850	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
AL072_11880	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
AL072_11895	COG1791	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway
AL072_11900	COG2814	Major facilitator Superfamily
AL072_11905	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
AL072_11915	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
AL072_11935	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
AL072_11945	COG3737	Protein of unknown function (DUF498/DUF598)
AL072_11950	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
AL072_11955	COG1233	COG1233 Phytoene dehydrogenase and related
AL072_11960	COG1562	ergosterol biosynthetic process
AL072_11965	COG1562	ergosterol biosynthetic process
AL072_11985	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
AL072_12000	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
AL072_12010	COG2801	Transposase and inactivated derivatives
AL072_12015	COG0617	tRNA 3'-terminal CCA addition
AL072_12030	COG0714	Associated with various cellular activities
AL072_12060	COG2323	membrane
AL072_12075	COG2226	methyltransferase
AL072_12080	COG2814	Major facilitator Superfamily
AL072_12085	COG0583	DNA-binding transcription factor activity
AL072_12090	COG0629	single-stranded DNA binding
AL072_12095	COG2204	response regulator
AL072_12120	COG0123	including yeast histone deacetylase and acetoin utilization protein
AL072_12125	COG1116	anion transmembrane transporter activity
AL072_12130	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AL072_12135	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AL072_12145	COG0483	inositol monophosphate 1-phosphatase activity
AL072_12160	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
AL072_12165	COG1923	regulation of RNA biosynthetic process
AL072_12175	COG3744	PilT protein domain protein
AL072_12185	COG2204	response regulator
AL072_12215	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
AL072_12215	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
AL072_12225	COG1942	4-Oxalocrotonate Tautomerase
AL072_12230	COG2867	negative regulation of translational initiation
AL072_12235	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
AL072_12245	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AL072_12255	COG0508	dehydrogenase complex catalyzes the overall conversion of
AL072_12260	COG0022	dehydrogenase e1 component
AL072_12260	COG0508	dehydrogenase complex catalyzes the overall conversion of
AL072_12265	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
AL072_12285	COG4149	molybdate abc transporter
AL072_12290	COG0725	ABC transporter, periplasmic molybdate-binding protein
AL072_12300	COG2261	transglycosylase associated protein
AL072_12315	COG2135	peptidase activity
AL072_12325	COG2199	diguanylate cyclase activity
AL072_12325	COG2203	Gaf domain
AL072_12325	COG2200	EAL domain
AL072_12335	COG1218	3'(2'),5'-bisphosphate nucleotidase
AL072_12340	COG2833	Protein of unknown function (DUF455)
AL072_12345	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
AL072_12350	COG0328	RNA-DNA hybrid ribonuclease activity
AL072_12355	COG0678	peroxiredoxin activity
AL072_12360	COG2824	Alkylphosphonate utilization operon protein PhnA
AL072_12365	COG4232	protein-disulfide reductase activity
AL072_12370	COG1678	Uncharacterized ACR, COG1678
AL072_12375	COG0314	molybdopterin synthase activity
AL072_12380	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
AL072_12390	COG0546	phosphoglycolate phosphatase activity
AL072_12395	COG1763	Mo-molybdopterin cofactor biosynthetic process
AL072_12400	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
AL072_12410	COG1028	Short-chain dehydrogenase reductase Sdr
AL072_12440	COG4120	Belongs to the binding-protein-dependent transport system permease family
AL072_12445	COG0410	ABC transporter
AL072_12480	COG0583	DNA-binding transcription factor activity
AL072_12485	COG0540	Belongs to the ATCase OTCase family
AL072_12505	COG0693	protein deglycase activity
AL072_12510	COG1053	succinate dehydrogenase
AL072_12510	COG3976	FMN-binding domain protein
AL072_12525	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AL072_12540	COG0776	regulation of translation
AL072_12545	COG4957	zinc ion binding
AL072_12550	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
AL072_12580	COG0741	lytic transglycosylase activity
AL072_12585	COG0556	nucleotide-excision repair
AL072_12590	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
AL072_12595	COG2333	competence protein COMEC
AL072_12595	COG0658	competence protein
AL072_12600	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AL072_12625	COG0446	pyridine nucleotide-disulphide oxidoreductase
AL072_12635	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AL072_12640	COG3494	Protein of unknown function (DUF1009)
AL072_12645	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AL072_12665	COG0750	zinc metalloprotease
AL072_12670	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
AL072_12675	COG0575	Belongs to the CDS family
AL072_12680	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
AL072_12685	COG0233	cytoplasmic translational termination
AL072_12690	COG0528	UMP kinase activity
AL072_12695	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
AL072_12700	COG0052	Belongs to the universal ribosomal protein uS2 family
AL072_12705	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
AL072_12730	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
AL072_12735	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
AL072_12740	COG0509	glycine decarboxylation via glycine cleavage system
AL072_12745	COG0404	The glycine cleavage system catalyzes the degradation of glycine
AL072_12765	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
AL072_12770	COG1492	cobalamin metabolic process
AL072_12805	COG0534	Mate efflux family protein
AL072_12810	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
AL072_12815	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
AL072_12850	COG0577	efflux transmembrane transporter activity
AL072_12850	COG1136	(ABC) transporter
AL072_12855	COG1136	(ABC) transporter
AL072_12870	COG2877	3-deoxy-8-phosphooctulonate synthase activity
AL072_12890	COG0149	triose-phosphate isomerase activity
AL072_12900	COG1846	Transcriptional regulator
AL072_12910	COG0745	RESPONSE REGULATOR receiver
AL072_12915	COG2205	protein histidine kinase activity
AL072_12920	COG2197	response regulator
AL072_12930	COG0330	HflC and HflK could
AL072_12935	COG0330	HflC and HflK could
AL072_12940	COG0489	protein tyrosine kinase activity
AL072_12945	COG0443	Heat shock 70 kDa protein
AL072_12950	COG1028	Short-chain dehydrogenase reductase Sdr
AL072_12975	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
AL072_12980	COG5002	protein histidine kinase activity
AL072_12980	COG0784	Response regulator, receiver
AL072_12980	COG2205	protein histidine kinase activity
AL072_12990	COG2208	phosphoserine phosphatase activity
AL072_13030	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
AL072_13035	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
AL072_13055	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
AL072_13060	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
AL072_13065	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
AL072_13115	COG1216	Glycosyl transferase, family 2
AL072_13120	COG1396	sequence-specific DNA binding
AL072_13155	COG0124	histidyl-tRNA synthetase
AL072_13160	COG1846	Transcriptional regulator
AL072_13165	COG0300	oxidoreductase activity
AL072_13175	COG0628	permease
AL072_13180	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
AL072_13190	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
AL072_13195	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
AL072_13200	COG0525	valine-tRNA ligase activity
AL072_13210	COG1538	Outer membrane efflux protein
AL072_13220	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
AL072_13245	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AL072_13250	COG0494	nUDIX hydrolase
AL072_13265	COG2897	thiosulfate sulfurtransferase activity
AL072_13270	COG0456	acetyltransferase
AL072_13285	COG3713	MltA-interacting MipA family protein
AL072_13290	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
AL072_13295	COG1126	abc transporter atp-binding protein
AL072_13300	COG0765	amino acid transport
AL072_13305	COG4597	amino acid ABC transporter
AL072_13310	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AL072_13315	COG0626	cystathionine gamma-synthase activity
AL072_13345	COG2972	Histidine kinase
AL072_13345	COG0840	transmembrane signaling receptor activity
AL072_13360	COG2308	Evidence 4 Homologs of previously reported genes of
AL072_13365	COG1360	Flagellar Motor Protein
AL072_13370	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AL072_13390	COG0318	PFAM AMP-dependent synthetase and ligase
AL072_13395	COG0789	Transcriptional regulator
AL072_13405	COG2086	electron transfer activity
AL072_13420	COG2205	protein histidine kinase activity
AL072_13425	COG0728	peptidoglycan biosynthetic process
AL072_13445	COG1765	OsmC-like protein
AL072_13450	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AL072_13465	COG0741	lytic transglycosylase activity
AL072_13480	COG2226	methyltransferase
AL072_13500	COG1178	ABC-type Fe3 transport system permease component
AL072_13520	COG1752	Esterase of the alpha-beta hydrolase superfamily
AL072_13525	COG1132	(ABC) transporter
AL072_13530	COG3842	ATPase activity
AL072_13535	COG1840	ABC-type Fe3 transport system, periplasmic component
AL072_13540	COG5001	Diguanylate cyclase
AL072_13550	COG1742	UPF0060 membrane protein
AL072_13565	COG3237	CsbD-like
AL072_13570	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AL072_13575	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
AL072_13595	COG1845	cytochrome c oxidase, subunit III
AL072_13600	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
AL072_13610	COG0109	protoheme IX farnesyltransferase activity
AL072_13615	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
AL072_13620	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
AL072_13625	COG0758	DNA mediated transformation
AL072_13630	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
AL072_13635	COG1024	Enoyl-CoA hydratase
AL072_13640	COG1832	CoA-binding protein
AL072_13655	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
AL072_13685	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
AL072_13695	COG0745	RESPONSE REGULATOR receiver
AL072_13695	COG3706	GGDEF domain
AL072_13700	COG0784	Response regulator, receiver
AL072_13705	COG5002	protein histidine kinase activity
AL072_13705	COG5001	Diguanylate cyclase
AL072_13705	COG3447	MASE1 domain protein
AL072_13725	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
AL072_13740	COG1238	metal cluster binding
AL072_13745	COG0203	ribosomal protein L17
AL072_13760	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
AL072_13765	COG0469	pyruvate kinase activity
AL072_13775	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
AL072_13780	COG0251	oxidation-reduction process
AL072_13785	COG3591	Belongs to the peptidase S1B family
AL072_13790	COG0551	DNA topoisomerase type I activity
AL072_13790	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
AL072_13875	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
AL072_13875	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
AL072_13920	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
AL072_13945	COG0154	amidase activity
AL072_13950	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
AL072_13965	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
AL072_13975	COG1351	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NAD(P)H and FADH(2) as the reductant
AL072_13995	COG0242	peptide deformylase activity
AL072_14000	COG0828	Belongs to the bacterial ribosomal protein bS21 family
AL072_14005	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
AL072_14010	COG1201	RNA secondary structure unwinding
AL072_14025	COG0415	Belongs to the DNA photolyase family
AL072_14030	COG0735	belongs to the Fur family
AL072_14050	COG1609	Transcriptional regulator
AL072_14085	COG1201	RNA secondary structure unwinding
AL072_14100	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
AL072_14125	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
AL072_14165	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
AL072_14175	COG1737	Transcriptional regulator
AL072_14200	COG5424	Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ
AL072_14205	COG0535	radical SAM domain protein
AL072_14220	COG1335	isochorismatase
AL072_14230	COG1732	Glycine betaine
AL072_14235	COG1174	glycine betaine transport
AL072_14240	COG1125	glycine betaine transport
AL072_14245	COG1174	glycine betaine transport
AL072_14250	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
AL072_14255	COG0022	dehydrogenase e1 component
AL072_14265	COG1250	3-hydroxyacyl-CoA dehydrogenase
AL072_14265	COG1024	Enoyl-CoA hydratase
AL072_14305	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AL072_14330	COG0859	PFAM glycosyl transferase family 9
AL072_14330	COG0457	Tetratricopeptide repeat
AL072_14340	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AL072_14340	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AL072_14345	COG1105	Belongs to the carbohydrate kinase PfkB family
AL072_14350	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
AL072_14350	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
AL072_14355	COG1609	Transcriptional regulator
AL072_14380	COG0438	transferase activity, transferring glycosyl groups
AL072_14395	COG0438	transferase activity, transferring glycosyl groups
AL072_14430	COG4178	(ABC) transporter
AL072_14435	COG0583	DNA-binding transcription factor activity
AL072_14440	COG0028	Belongs to the TPP enzyme family
AL072_14445	COG1012	belongs to the aldehyde dehydrogenase family
AL072_14460	COG2080	2 iron, 2 sulfur cluster binding
AL072_14475	COG0795	lipopolysaccharide-transporting ATPase activity
AL072_14495	COG1104	cysteine desulfurase activity
AL072_14505	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
AL072_14515	COG1984	allophanate hydrolase subunit 2
AL072_14530	COG4336	lyase activity
AL072_14535	COG0410	ABC transporter
AL072_14540	COG0411	ABC transporter
AL072_14600	COG2986	histidine ammonia-lyase
AL072_14605	COG0402	S-adenosylhomocysteine deaminase activity
AL072_14610	COG1228	amidohydrolase
AL072_14615	COG2188	Transcriptional regulator
AL072_14620	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
AL072_14645	COG0697	spore germination
AL072_14665	COG0542	response to heat
AL072_14675	COG1028	Short-chain dehydrogenase reductase Sdr
AL072_14685	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
AL072_14710	COG1360	Flagellar Motor Protein
AL072_14725	COG3501	Rhs element vgr protein
AL072_14750	COG2267	carboxylic ester hydrolase activity
AL072_14780	COG0583	DNA-binding transcription factor activity
AL072_14785	COG0655	NAD(P)H dehydrogenase (quinone) activity
AL072_14790	COG0435	Glutathione S-transferase
AL072_14820	COG0408	coproporphyrinogen oxidase activity
AL072_14825	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
AL072_14850	COG0745	RESPONSE REGULATOR receiver
AL072_14855	COG3706	GGDEF domain
AL072_14860	COG3800	Transcriptional regulator
AL072_14860	COG1396	sequence-specific DNA binding
AL072_14865	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
AL072_14900	COG1271	oxidase subunit
AL072_14905	COG1294	oxidase, subunit
AL072_14925	COG5002	protein histidine kinase activity
AL072_14945	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
AL072_14955	COG1850	ribulose-bisphosphate carboxylase activity
AL072_14965	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
AL072_15005	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
AL072_15040	COG1278	Cold shock
AL072_15050	COG0513	Belongs to the DEAD box helicase family
AL072_15060	COG1064	alcohol dehydrogenase
AL072_15110	COG1028	Short-chain dehydrogenase reductase Sdr
AL072_15125	COG1902	pentaerythritol trinitrate reductase activity
AL072_15150	COG2723	6-phospho-beta-galactosidase activity
AL072_15175	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
AL072_15180	COG4172	Belongs to the ABC transporter superfamily
AL072_15190	COG0601	transmembrane transport
AL072_15200	COG0235	Class ii aldolase
AL072_15205	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AL072_15220	COG2084	Dehydrogenase
AL072_15225	COG3265	gluconokinase activity
AL072_15230	COG1028	Short-chain dehydrogenase reductase Sdr
AL072_15235	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AL072_15240	COG1063	alcohol dehydrogenase
AL072_15245	COG1609	Transcriptional regulator
AL072_15250	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
AL072_15255	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
AL072_15260	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
AL072_15265	COG0739	heme binding
AL072_15265	COG1196	nuclear chromosome segregation
AL072_15265	COG0741	lytic transglycosylase activity
AL072_15280	COG0583	DNA-binding transcription factor activity
AL072_15300	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
AL072_15305	COG3842	ATPase activity
AL072_15310	COG2182	Extracellular solute-binding protein
AL072_15315	COG1176	ABC-type spermidine putrescine transport system, permease component I
AL072_15330	COG1396	sequence-specific DNA binding
AL072_15330	COG1917	Cupin 2, conserved barrel domain protein
AL072_15335	COG1012	belongs to the aldehyde dehydrogenase family
AL072_15340	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
AL072_15345	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AL072_15350	COG2972	Histidine kinase
AL072_15350	COG0840	transmembrane signaling receptor activity
AL072_15390	COG0471	metal ion transport
AL072_15390	COG3273	potassium ion transport
AL072_15410	COG2202	Pas domain
AL072_15410	COG2205	protein histidine kinase activity
AL072_15415	COG2373	Large extracellular alpha-helical protein
AL072_15430	COG0183	Belongs to the thiolase family
AL072_15435	COG1250	3-hydroxyacyl-CoA dehydrogenase
AL072_15435	COG1024	Enoyl-CoA hydratase
AL072_15440	COG1960	acyl-CoA dehydrogenase activity
AL072_15445	COG2197	response regulator
AL072_15450	COG0516	GMP reductase activity
AL072_15450	COG0517	IMP dehydrogenase activity
AL072_15455	COG3047	cAMP biosynthetic process
AL072_15475	COG1194	a g-specific adenine glycosylase
AL072_15490	COG1196	nuclear chromosome segregation
AL072_15500	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AL072_15505	COG0174	glutamine synthetase
AL072_15510	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
AL072_15510	COG0546	phosphoglycolate phosphatase activity
AL072_15515	COG2076	Multidrug Resistance protein
AL072_15530	COG0535	radical SAM domain protein
AL072_15540	COG3842	ATPase activity
AL072_15545	COG1176	ABC-type spermidine putrescine transport system, permease component I
AL072_15550	COG1177	transmembrane transport
AL072_15565	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AL072_15570	COG0071	Belongs to the small heat shock protein (HSP20) family
AL072_15575	COG0745	RESPONSE REGULATOR receiver
AL072_15575	COG3706	GGDEF domain
AL072_15580	COG5002	protein histidine kinase activity
AL072_15610	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AL072_15610	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AL072_15625	COG1028	Short-chain dehydrogenase reductase Sdr
AL072_15645	COG0800	Aldolase
AL072_15650	COG3734	2-keto-3-deoxy-galactonokinase
AL072_15655	COG1414	Transcriptional regulator
AL072_15670	COG1741	Belongs to the pirin family
AL072_15690	COG3712	iron ion homeostasis
AL072_15700	COG0316	Belongs to the HesB IscA family
AL072_15705	COG2151	metal-sulfur cluster biosynthetic enzyme
AL072_15715	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
AL072_15720	COG0719	Fe-S assembly protein
AL072_15725	COG0396	ATPase activity
AL072_15730	COG0719	Fe-S assembly protein
AL072_15770	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
AL072_15775	COG0840	transmembrane signaling receptor activity
AL072_15780	COG1475	DNA binding
AL072_15785	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AL072_15790	COG1959	2 iron, 2 sulfur cluster binding
AL072_15795	COG1028	Short-chain dehydrogenase reductase Sdr
AL072_15800	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
AL072_15805	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
AL072_15815	COG0704	Plays a role in the regulation of phosphate uptake
AL072_15825	COG2114	Pfam Adenylate and Guanylate cyclase catalytic domain
AL072_15895	COG4227	nucleotidyltransferase activity
AL072_16155	COG4771	TonB-dependent receptor
AL072_16200	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
AL072_16205	COG1024	Enoyl-CoA hydratase
AL072_16210	COG1960	acyl-CoA dehydrogenase activity
AL072_16225	COG0183	Belongs to the thiolase family
AL072_16230	COG1250	3-hydroxyacyl-CoA dehydrogenase
AL072_16260	COG1902	pentaerythritol trinitrate reductase activity
AL072_16270	COG3618	amidohydrolase
AL072_16280	COG0318	PFAM AMP-dependent synthetase and ligase
AL072_16295	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AL072_16300	COG0183	Belongs to the thiolase family
AL072_16305	COG1250	3-hydroxyacyl-CoA dehydrogenase
AL072_16310	COG0604	alcohol dehydrogenase
AL072_16310	COG1028	Short-chain dehydrogenase reductase Sdr
AL072_16310	COG3321	synthase
AL072_16320	COG1250	3-hydroxyacyl-CoA dehydrogenase
AL072_16325	COG1250	3-hydroxyacyl-CoA dehydrogenase
AL072_16330	COG1960	acyl-CoA dehydrogenase activity
AL072_16335	COG1028	Short-chain dehydrogenase reductase Sdr
AL072_16350	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
AL072_16355	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AL072_16360	COG3604	Transcriptional regulator
AL072_16380	COG0559	Belongs to the binding-protein-dependent transport system permease family
AL072_16395	COG0586	Pfam SNARE associated Golgi protein
AL072_16440	COG0730	response to heat
AL072_16460	COG4585	Histidine kinase
AL072_16485	COG4774	siderophore transport
AL072_16500	COG4774	siderophore transport
AL072_16505	COG2204	response regulator
AL072_16510	COG1250	3-hydroxyacyl-CoA dehydrogenase
AL072_16515	COG3246	L-lysine catabolic process to acetate
AL072_16520	COG1028	Short-chain dehydrogenase reductase Sdr
AL072_16540	COG0583	DNA-binding transcription factor activity
AL072_16555	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
AL072_16560	COG1028	Short-chain dehydrogenase reductase Sdr
AL072_16570	COG1850	ribulose-bisphosphate carboxylase activity
AL072_16585	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
AL072_16590	COG3954	Phosphoribulokinase
AL072_16595	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
AL072_16600	COG0191	fructose-bisphosphate aldolase activity
AL072_16610	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AL072_16630	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AL072_16635	COG2271	Major facilitator Superfamily
AL072_16640	COG1013	pyruvate-flavodoxin oxidoreductase activity
AL072_16640	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
AL072_16640	COG0674	pyruvate-flavodoxin oxidoreductase activity
AL072_16645	COG0246	Mannitol dehydrogenase
AL072_16655	COG1609	Transcriptional regulator
AL072_16670	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
AL072_16675	COG1882	Formate acetyltransferase
AL072_16700	COG0745	RESPONSE REGULATOR receiver
AL072_16705	COG2205	protein histidine kinase activity
AL072_16775	COG0366	Alpha amylase catalytic
AL072_16785	COG1131	(ABC) transporter
AL072_16805	COG5002	protein histidine kinase activity
AL072_16805	COG5001	Diguanylate cyclase
AL072_16830	COG0154	amidase activity
AL072_16840	COG2363	Small membrane protein
AL072_16845	COG0640	Transcriptional regulator
AL072_16850	COG0425	Belongs to the sulfur carrier protein TusA family
AL072_16855	COG0123	including yeast histone deacetylase and acetoin utilization protein
AL072_16870	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
AL072_16905	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AL072_16915	COG1126	abc transporter atp-binding protein
AL072_16930	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
AL072_16935	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
AL072_16940	COG0784	Response regulator, receiver
AL072_16940	COG5002	protein histidine kinase activity
AL072_16970	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
AL072_16985	COG0318	PFAM AMP-dependent synthetase and ligase
AL072_16990	COG1268	BioY protein
AL072_16995	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
AL072_17000	COG1122	ATPase activity
AL072_17005	COG1126	abc transporter atp-binding protein
AL072_17010	COG0765	amino acid transport
AL072_17015	COG0765	amino acid transport
AL072_17025	COG2188	Transcriptional regulator
AL072_17030	COG2995	paraquat-inducible protein a
AL072_17035	COG3008	intermembrane lipid transfer
AL072_17035	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
AL072_17050	COG0583	DNA-binding transcription factor activity
AL072_17055	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
AL072_17060	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
AL072_17080	COG2132	Multicopper oxidase
AL072_17095	COG3180	Ammonia monooxygenase
AL072_17110	COG4176	ABC-type proline glycine betaine transport system permease component
AL072_17115	COG1309	transcriptional regulator
AL072_17125	COG4191	Histidine kinase
AL072_17130	COG0747	negative chemotaxis
AL072_17135	COG3437	response regulator, receiver
AL072_17135	COG0784	Response regulator, receiver
AL072_17140	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
AL072_17165	COG0737	Belongs to the 5'-nucleotidase family
AL072_17170	COG0512	Glutamine amidotransferase of anthranilate synthase
AL072_17175	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
AL072_17180	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
AL072_17270	COG3012	SEC-C Motif Domain Protein
AL072_17280	COG1448	Aminotransferase
AL072_17290	COG1845	cytochrome c oxidase, subunit III
AL072_17305	COG0714	Associated with various cellular activities
AL072_17315	COG0521	Mo-molybdopterin cofactor biosynthetic process
AL072_17320	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
AL072_17335	COG1028	Short-chain dehydrogenase reductase Sdr
AL072_17345	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
AL072_17350	COG4106	trans-aconitate 2-methyltransferase activity
AL072_17355	COG1969	Ni Fe-hydrogenase, b-type cytochrome subunit
AL072_17375	COG2204	response regulator
AL072_17380	COG0375	protein maturation
AL072_17420	COG3852	Histidine kinase
AL072_17435	COG1566	PFAM secretion protein HlyD family protein
AL072_17445	COG2801	Transposase and inactivated derivatives
AL072_17455	COG2258	MOSC domain
AL072_17465	COG1982	Orn Lys Arg decarboxylase major
AL072_17475	COG5507	3-demethylubiquinone-9 3-methyltransferase
AL072_17480	COG1027	Aspartate ammonia-lyase
AL072_17485	COG1301	dicarboxylic acid transport
AL072_17490	COG4191	Histidine kinase
AL072_17515	COG0581	inorganic phosphate transmembrane transporter activity
AL072_17520	COG1176	ABC-type spermidine putrescine transport system, permease component I
AL072_17530	COG3842	ATPase activity
AL072_17545	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
AL072_17555	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
AL072_17555	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
AL072_17575	COG1335	isochorismatase
AL072_17585	COG0673	inositol 2-dehydrogenase activity
AL072_17595	COG1879	ABC-type sugar transport system periplasmic component
AL072_17600	COG1172	Belongs to the binding-protein-dependent transport system permease family
AL072_17605	COG1129	ABC transporter
AL072_17610	COG1940	carbohydrate kinase activity
AL072_17615	COG0840	transmembrane signaling receptor activity
AL072_17635	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
AL072_17640	COG1012	belongs to the aldehyde dehydrogenase family
AL072_17645	COG1522	sequence-specific DNA binding
AL072_17650	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AL072_17655	COG1126	abc transporter atp-binding protein
AL072_17660	COG0765	amino acid transport
AL072_17665	COG0765	amino acid transport
AL072_17675	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
AL072_17680	COG2423	ornithine cyclodeaminase activity
AL072_17685	COG0006	proline dipeptidase activity
AL072_17690	COG3608	succinylglutamate desuccinylase aspartoacylase
AL072_17705	COG0477	Major facilitator Superfamily
AL072_17715	COG2113	Glycine betaine
AL072_17720	COG4176	ABC-type proline glycine betaine transport system permease component
AL072_17740	COG0596	Alpha beta hydrolase
AL072_17745	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AL072_17750	COG1012	belongs to the aldehyde dehydrogenase family
AL072_17765	COG0745	RESPONSE REGULATOR receiver
AL072_17795	COG0747	negative chemotaxis
AL072_17815	COG4608	Belongs to the ABC transporter superfamily
AL072_17820	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AL072_17830	COG0659	secondary active sulfate transmembrane transporter activity
AL072_17835	COG0589	response to stress
AL072_17850	COG2515	1-aminocyclopropane-1-carboxylate deaminase
AL072_17855	COG1522	sequence-specific DNA binding
AL072_17880	COG0601	transmembrane transport
AL072_17890	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
AL072_17905	COG0444	Belongs to the ABC transporter superfamily
AL072_17925	COG0066	3-isopropylmalate dehydratase activity
AL072_17930	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
AL072_17935	COG1053	succinate dehydrogenase
AL072_17975	COG0559	Belongs to the binding-protein-dependent transport system permease family
AL072_17985	COG2188	Transcriptional regulator
AL072_17990	COG1446	asparaginase
AL072_17995	COG2362	D-Aminopeptidase
AL072_18005	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AL072_18015	COG0747	negative chemotaxis
AL072_18020	COG4172	Belongs to the ABC transporter superfamily
AL072_18035	COG3573	Dehydrogenase
AL072_18060	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AL072_18130	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
AL072_18135	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
AL072_18140	COG1984	allophanate hydrolase subunit 2
AL072_18145	COG3842	ATPase activity
AL072_18150	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
AL072_18155	COG1176	ABC-type spermidine putrescine transport system, permease component I
AL072_18160	COG1177	transmembrane transport
AL072_18175	COG0154	amidase activity
AL072_18180	COG1802	Transcriptional regulator
AL072_18195	COG0246	Mannitol dehydrogenase
AL072_18200	COG1312	Catalyzes the dehydration of D-mannonate
AL072_18205	COG4604	ABC transporter, ATP-binding protein
AL072_18210	COG4605	iron ion homeostasis
AL072_18215	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AL072_18220	COG4607	ABC-type enterochelin transport system periplasmic component
AL072_18235	COG4774	siderophore transport
AL072_18240	COG3128	pkhd-type hydroxylase
AL072_18260	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
AL072_18265	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
AL072_18270	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
AL072_18275	COG2205	protein histidine kinase activity
AL072_18280	COG0745	RESPONSE REGULATOR receiver
AL072_18300	COG0348	domain, Protein
AL072_18305	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AL072_18330	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AL072_18380	COG1028	Short-chain dehydrogenase reductase Sdr
AL072_18385	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
AL072_18390	COG0625	glutathione transferase activity
AL072_18395	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AL072_18395	COG1017	nitric oxide dioxygenase activity
AL072_18415	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AL072_18435	COG2072	flavoprotein involved in K transport
AL072_18445	COG2144	transferase activity, transferring acyl groups
AL072_18450	COG0438	transferase activity, transferring glycosyl groups
AL072_18465	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
AL072_18470	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
AL072_18475	COG1126	abc transporter atp-binding protein
AL072_18480	COG0765	amino acid transport
AL072_18490	COG1304	FMN binding
AL072_18495	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AL072_18505	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AL072_18510	COG0583	DNA-binding transcription factor activity
AL072_18530	COG0154	amidase activity
AL072_18535	COG0154	amidase activity
AL072_18540	COG1335	isochorismatase
AL072_18545	COG0747	negative chemotaxis
AL072_18565	COG4608	Belongs to the ABC transporter superfamily
AL072_18570	COG1335	isochorismatase
AL072_18575	COG3180	Ammonia monooxygenase
AL072_18580	COG1802	Transcriptional regulator
AL072_18590	COG1073	alpha beta
AL072_18590	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
AL072_18590	COG3064	Membrane
AL072_18640	COG3713	MltA-interacting MipA family protein
AL072_18645	COG0745	RESPONSE REGULATOR receiver
AL072_18670	COG4993	Dehydrogenase
AL072_18675	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AL072_18680	COG2010	Cytochrome c
AL072_18690	COG0714	Associated with various cellular activities
AL072_18725	COG0667	Aldo Keto reductase
AL072_18730	COG0583	DNA-binding transcription factor activity
AL072_18745	COG0559	Belongs to the binding-protein-dependent transport system permease family
AL072_18780	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
AL072_18790	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AL072_18815	COG1522	sequence-specific DNA binding
AL072_18820	COG1414	Transcriptional regulator
AL072_18830	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AL072_18850	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AL072_18855	COG0726	polysaccharide deacetylase
AL072_18865	COG1028	Short-chain dehydrogenase reductase Sdr
AL072_18900	COG1028	Short-chain dehydrogenase reductase Sdr
AL072_18905	COG1028	Short-chain dehydrogenase reductase Sdr
AL072_18920	COG1028	Short-chain dehydrogenase reductase Sdr
AL072_18935	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AL072_18950	COG0583	DNA-binding transcription factor activity
AL072_18955	COG0626	cystathionine gamma-synthase activity
AL072_18960	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AL072_18965	COG4597	amino acid ABC transporter
AL072_18970	COG0765	amino acid transport
AL072_18975	COG1126	abc transporter atp-binding protein
AL072_19020	COG1294	oxidase, subunit
AL072_19030	COG2080	2 iron, 2 sulfur cluster binding
AL072_19035	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
AL072_19040	COG1529	Aldehyde oxidase and xanthine dehydrogenase
AL072_19050	COG0444	Belongs to the ABC transporter superfamily
AL072_19055	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AL072_19060	COG0601	transmembrane transport
AL072_19070	COG4566	intracellular signal transduction
AL072_19085	COG3622	Belongs to the hyi family
AL072_19090	COG3706	GGDEF domain
AL072_19095	COG0583	DNA-binding transcription factor activity
AL072_19105	COG0840	transmembrane signaling receptor activity
AL072_19105	COG3290	protein histidine kinase activity
AL072_19115	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
AL072_19120	COG0300	oxidoreductase activity
AL072_19135	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
AL072_19150	COG1595	DNA-templated transcription, initiation
AL072_19155	COG3806	Anti-sigma factor
AL072_19160	COG1940	carbohydrate kinase activity
AL072_19170	COG1175	transmembrane transport
AL072_19285	COG1028	Short-chain dehydrogenase reductase Sdr
AL072_19290	COG2207	Transcriptional regulator
AL072_19310	COG1840	ABC-type Fe3 transport system, periplasmic component
AL072_19315	COG3842	ATPase activity
AL072_19330	COG0583	DNA-binding transcription factor activity
AL072_19335	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
AL072_19340	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AL072_19345	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AL072_19345	COG2022	thiamine diphosphate biosynthetic process
AL072_19355	COG1234	tRNA 3'-trailer cleavage
AL072_19360	COG1177	transmembrane transport
AL072_19425	COG0469	pyruvate kinase activity
AL072_19440	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
AL072_19450	COG4208	sulfate ABC transporter
AL072_19480	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
AL072_19485	COG0367	asparagine synthase
AL072_19490	COG0318	PFAM AMP-dependent synthetase and ligase
AL072_19505	COG0438	transferase activity, transferring glycosyl groups
AL072_19510	COG0438	transferase activity, transferring glycosyl groups
AL072_19535	COG1045	serine acetyltransferase
AL072_19540	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
AL072_19555	COG3206	protein involved in exopolysaccharide biosynthesis
AL072_19555	COG0489	protein tyrosine kinase activity
AL072_19570	COG0588	phosphoglycerate mutase activity
AL072_19585	COG5002	protein histidine kinase activity
AL072_19605	COG2089	acid synthase
AL072_19610	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
AL072_19635	COG1028	Short-chain dehydrogenase reductase Sdr
AL072_19640	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
AL072_19645	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AL072_19655	COG0859	PFAM glycosyl transferase family 9
AL072_19655	COG0457	Tetratricopeptide repeat
AL072_19670	COG0457	Tetratricopeptide repeat
AL072_19670	COG0859	PFAM glycosyl transferase family 9
AL072_19695	COG1558	bacterial-type flagellum-dependent cell motility
AL072_19700	COG0631	protein serine/threonine phosphatase activity
AL072_19710	COG0366	Alpha amylase catalytic
AL072_19715	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
AL072_19745	COG4191	Histidine kinase
AL072_19745	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AL072_19770	COG0625	glutathione transferase activity
AL072_19780	COG1024	Enoyl-CoA hydratase
AL072_19790	COG0745	RESPONSE REGULATOR receiver
AL072_19805	COG1640	4-alpha-glucanotransferase
AL072_19815	COG2204	response regulator
AL072_19820	COG4191	Histidine kinase
AL072_19825	COG1301	dicarboxylic acid transport
AL072_19830	COG0280	phosphate acetyltransferase
AL072_19830	COG0281	malic enzyme
AL072_19840	COG0859	PFAM glycosyl transferase family 9
AL072_19840	COG0457	Tetratricopeptide repeat
AL072_19860	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AL072_19885	COG0559	Belongs to the binding-protein-dependent transport system permease family
AL072_19890	COG1172	Belongs to the binding-protein-dependent transport system permease family
AL072_19895	COG0411	ABC transporter
AL072_19905	COG0772	Belongs to the SEDS family
AL072_19910	COG3706	GGDEF domain
AL072_19915	COG1309	transcriptional regulator
AL072_19935	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AL072_19940	COG0393	Putative heavy-metal-binding
AL072_19975	COG2183	response to ionizing radiation
AL072_19980	COG0651	ATP synthesis coupled electron transport
AL072_19985	COG0650	Formate hydrogenlyase subunit 4
AL072_19995	COG0651	ATP synthesis coupled electron transport
AL072_20000	COG0649	NAD binding
AL072_20000	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AL072_20005	COG3260	NADH ubiquinone oxidoreductase 20
AL072_20025	COG2801	Transposase and inactivated derivatives
AL072_20040	COG4251	negative regulation of phosphorylation
AL072_20045	COG0784	Response regulator, receiver
AL072_20055	COG0784	Response regulator, receiver
AL072_20060	COG2847	Copper chaperone PCu(A)C
AL072_20125	COG1131	(ABC) transporter
AL072_20145	COG4372	Transposase
AL072_20150	COG4372	Transposase
AL072_20160	COG3436	PFAM IS66 Orf2 family protein
AL072_20210	COG2226	methyltransferase
AL072_20225	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AL072_20235	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
AL072_20240	COG1846	Transcriptional regulator
AL072_20265	COG3707	response regulator
AL072_20275	COG1304	FMN binding
AL072_20285	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
AL072_20290	COG1132	(ABC) transporter
AL072_20305	COG4774	siderophore transport
AL072_20325	COG3791	Glutathione-dependent formaldehyde-activating
AL072_20335	COG0028	Belongs to the TPP enzyme family
AL072_20340	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AL072_20345	COG0367	asparagine synthase
AL072_20350	COG0189	ligase activity
AL072_20350	COG1181	Belongs to the D-alanine--D-alanine ligase family
AL072_20350	COG2918	glutathione biosynthetic process
AL072_20355	COG1363	Peptidase, m42
AL072_20360	COG2205	protein histidine kinase activity
AL072_20365	COG0745	RESPONSE REGULATOR receiver
AL072_20380	COG0840	transmembrane signaling receptor activity
AL072_20390	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
AL072_20400	COG2030	dehydratase
AL072_20400	COG1012	belongs to the aldehyde dehydrogenase family
AL072_20430	COG1253	flavin adenine dinucleotide binding
AL072_20440	COG2204	response regulator
AL072_20445	COG2198	Histidine kinase
AL072_20445	COG2205	protein histidine kinase activity
AL072_20445	COG0784	Response regulator, receiver
AL072_20450	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
AL072_20455	COG1396	sequence-specific DNA binding
AL072_20460	COG1766	The M ring may be actively involved in energy transduction
AL072_20470	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
AL072_20475	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
AL072_20480	COG2204	response regulator
AL072_20485	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
AL072_20495	COG0455	bacterial-type flagellum organization
AL072_20505	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
AL072_20510	COG2814	Major facilitator Superfamily
AL072_20520	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AL072_20525	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
AL072_20535	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AL072_20550	COG2814	Major facilitator Superfamily
AL072_20555	COG0789	Transcriptional regulator
AL072_20560	COG2217	Heavy metal translocating P-type atpase
AL072_20570	COG2860	membrane
AL072_20585	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
AL072_20590	COG0745	RESPONSE REGULATOR receiver
AL072_20600	COG2201	protein-glutamate methylesterase activity
AL072_20615	COG2201	protein-glutamate methylesterase activity
AL072_20625	COG0840	transmembrane signaling receptor activity
AL072_20640	COG0142	geranyltranstransferase activity
AL072_20650	COG2264	protein methyltransferase activity
AL072_20665	COG1666	GTP binding
AL072_20670	COG4608	Belongs to the ABC transporter superfamily
AL072_20675	COG0444	Belongs to the ABC transporter superfamily
AL072_20680	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AL072_20685	COG0601	transmembrane transport
AL072_20690	COG0747	negative chemotaxis
AL072_20695	COG0697	spore germination
AL072_20715	COG0784	Response regulator, receiver
AL072_20750	COG1414	Transcriptional regulator
AL072_20755	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
AL072_20760	COG0045	succinate-CoA ligase (ADP-forming) activity
AL072_20765	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AL072_20775	COG1802	Transcriptional regulator
AL072_20780	COG1414	Transcriptional regulator
AL072_20805	COG3960	tartronate-semialdehyde synthase activity
AL072_20810	COG2351	hydroxyisourate hydrolase activity
AL072_20820	COG3648	Uricase
AL072_20820	COG3195	allantoin biosynthetic process
AL072_20825	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
AL072_20830	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
AL072_20835	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
AL072_20840	COG0517	IMP dehydrogenase activity
AL072_20845	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
AL072_20875	COG0574	Belongs to the PEP-utilizing enzyme family
AL072_20875	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
AL072_20890	COG0469	pyruvate kinase activity
AL072_20895	COG1802	Transcriptional regulator
AL072_20900	COG0352	thiamine-phosphate diphosphorylase activity
AL072_20935	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AL072_20935	COG4191	Histidine kinase
AL072_20940	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
AL072_20955	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
AL072_20965	COG0728	peptidoglycan biosynthetic process
AL072_20970	COG0596	Alpha beta hydrolase
AL072_20975	COG0148	phosphopyruvate hydratase activity
AL072_20990	COG0678	peroxiredoxin activity
AL072_21000	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AL072_21010	COG3243	poly(R)-hydroxyalkanoic acid synthase
AL072_21015	COG3064	Membrane
AL072_21015	COG4991	sh3 domain protein
AL072_21015	COG0515	serine threonine protein kinase
AL072_21040	COG0437	4 iron, 4 sulfur cluster binding
AL072_21060	COG3005	denitrification pathway
AL072_21085	COG1595	DNA-templated transcription, initiation
AL072_21100	COG1121	(ABC) transporter
AL072_21145	COG1053	succinate dehydrogenase
AL072_21150	COG1902	pentaerythritol trinitrate reductase activity
AL072_21155	COG3976	FMN-binding domain protein
AL072_21155	COG1053	succinate dehydrogenase
AL072_21155	COG0431	NADPH-dependent FMN reductase
AL072_21175	COG0673	inositol 2-dehydrogenase activity
AL072_21185	COG1053	succinate dehydrogenase
AL072_21190	COG1250	3-hydroxyacyl-CoA dehydrogenase
AL072_21215	COG0410	ABC transporter
AL072_21225	COG1028	Short-chain dehydrogenase reductase Sdr
AL072_21240	COG0625	glutathione transferase activity
AL072_21250	COG0583	DNA-binding transcription factor activity
AL072_21260	COG0747	negative chemotaxis
AL072_21265	COG0601	transmembrane transport
AL072_21300	COG0318	PFAM AMP-dependent synthetase and ligase
AL072_21325	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
AL072_21355	COG3546	catalase activity
AL072_21360	COG2223	nitrite transmembrane transporter activity
AL072_21365	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
AL072_21375	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
AL072_21380	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
AL072_21385	COG0295	cytidine deaminase activity
AL072_21390	COG1640	4-alpha-glucanotransferase
AL072_21415	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
AL072_21420	COG0366	Alpha amylase catalytic
AL072_21440	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
AL072_21440	COG2885	chlorophyll binding
AL072_21445	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
AL072_21450	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
AL072_21455	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
AL072_21460	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
AL072_21475	COG1262	PFAM Formylglycine-generating sulfatase enzyme
AL072_21480	COG0583	DNA-binding transcription factor activity
AL072_21485	COG0625	glutathione transferase activity
AL072_21495	COG0410	ABC transporter
AL072_21500	COG0411	ABC transporter
AL072_21510	COG0559	Belongs to the binding-protein-dependent transport system permease family
AL072_21545	COG3135	benzoate transporter
AL072_21550	COG1802	Transcriptional regulator
AL072_21560	COG0583	DNA-binding transcription factor activity
AL072_21620	COG0559	Belongs to the binding-protein-dependent transport system permease family
AL072_21635	COG0183	Belongs to the thiolase family
AL072_21655	COG1454	alcohol dehydrogenase
AL072_21675	COG1960	acyl-CoA dehydrogenase activity
AL072_21680	COG1028	Short-chain dehydrogenase reductase Sdr
AL072_21685	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AL072_21690	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AL072_21705	COG2186	Transcriptional regulator
AL072_21710	COG2902	Dehydrogenase
AL072_21715	COG2207	Transcriptional regulator
AL072_21755	COG1475	DNA binding
AL072_21760	COG0747	negative chemotaxis
AL072_21780	COG4232	protein-disulfide reductase activity
AL072_21795	COG3278	Belongs to the heme-copper respiratory oxidase family
AL072_21805	COG3258	Cytochrome c
AL072_21820	COG0642	Histidine kinase
AL072_21825	COG0745	RESPONSE REGULATOR receiver
AL072_21830	COG4191	Histidine kinase
AL072_21835	COG4566	intracellular signal transduction
AL072_21855	COG3852	Histidine kinase
AL072_21860	COG2204	response regulator
AL072_21865	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
AL072_21870	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
AL072_21875	COG2031	fatty acid transporter
AL072_21880	COG0183	Belongs to the thiolase family
AL072_21890	COG0840	transmembrane signaling receptor activity
AL072_21895	COG0318	PFAM AMP-dependent synthetase and ligase
AL072_21900	COG1176	ABC-type spermidine putrescine transport system, permease component I
AL072_21905	COG3842	ATPase activity
AL072_21915	COG1024	Enoyl-CoA hydratase
AL072_21935	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
AL072_21945	COG1960	acyl-CoA dehydrogenase activity
AL072_21965	COG0410	ABC transporter
AL072_21995	COG1172	Belongs to the binding-protein-dependent transport system permease family
AL072_22000	COG1129	ABC transporter
AL072_22005	COG1879	ABC-type sugar transport system periplasmic component
AL072_22010	COG1984	allophanate hydrolase subunit 2
AL072_22020	COG0439	Biotin carboxylase
AL072_22025	COG0511	ligase activity, forming carbon-carbon bonds
AL072_22030	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
AL072_22045	COG2086	electron transfer activity
AL072_22055	COG3777	bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding
AL072_22060	COG0277	FAD linked oxidase domain protein
AL072_22070	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
AL072_22085	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
AL072_22090	COG0567	Dehydrogenase, E1 component
AL072_22110	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AL072_22125	COG3411	Ferredoxin
AL072_22130	COG0697	spore germination
AL072_22140	COG0559	Belongs to the binding-protein-dependent transport system permease family
AL072_22145	COG0411	ABC transporter
AL072_22165	COG0583	DNA-binding transcription factor activity
AL072_22180	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
AL072_22190	COG0740	serine-type endopeptidase activity
AL072_22195	COG0463	Glycosyl transferase, family 2
AL072_22210	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AL072_22230	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
AL072_22275	COG4774	siderophore transport
AL072_22295	COG1120	ATPase activity
AL072_22370	COG1012	belongs to the aldehyde dehydrogenase family
AL072_22380	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AL072_22385	COG3976	FMN-binding domain protein
AL072_22385	COG1053	succinate dehydrogenase
AL072_22385	COG0431	NADPH-dependent FMN reductase
AL072_22395	COG0372	Belongs to the citrate synthase family
AL072_22410	COG0559	Belongs to the binding-protein-dependent transport system permease family
AL072_22420	COG2086	electron transfer activity
AL072_22430	COG0183	Belongs to the thiolase family
AL072_22435	COG0583	DNA-binding transcription factor activity
AL072_22440	COG1960	acyl-CoA dehydrogenase activity
AL072_22455	COG0596	Alpha beta hydrolase
AL072_22480	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
AL072_22495	COG3474	cytochrome
AL072_22500	COG0308	aminopeptidase N
AL072_22530	COG0316	Belongs to the HesB IscA family
AL072_22535	COG0232	Belongs to the dGTPase family. Type 2 subfamily
AL072_22555	COG1994	Peptidase M50
AL072_22560	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
AL072_22565	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
AL072_22570	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
AL072_22575	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
AL072_22580	COG0805	protein transport
AL072_22610	COG0189	ligase activity
AL072_22615	COG0438	transferase activity, transferring glycosyl groups
AL072_22635	COG0420	3'-5' exonuclease activity
AL072_22715	COG0402	S-adenosylhomocysteine deaminase activity
AL072_22725	COG4603	Belongs to the binding-protein-dependent transport system permease family
AL072_22740	COG1414	Transcriptional regulator
AL072_22745	COG3842	ATPase activity
AL072_22750	COG1176	ABC-type spermidine putrescine transport system, permease component I
AL072_22755	COG1177	transmembrane transport
AL072_22770	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AL072_22785	COG2133	pyrroloquinoline quinone binding
AL072_22790	COG1802	Transcriptional regulator
AL072_22810	COG3052	prosthetic group binding
AL072_22855	COG0673	inositol 2-dehydrogenase activity
AL072_22860	COG1178	ABC-type Fe3 transport system permease component
AL072_22865	COG1840	ABC-type Fe3 transport system, periplasmic component
AL072_22870	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
AL072_22875	COG3842	ATPase activity
AL072_22880	COG1177	transmembrane transport
AL072_22885	COG1176	ABC-type spermidine putrescine transport system, permease component I
AL072_22965	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
AL072_22975	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AL072_22980	COG2814	Major facilitator Superfamily
AL072_22990	COG1309	transcriptional regulator
AL072_22995	COG0667	Aldo Keto reductase
AL072_23000	COG0640	Transcriptional regulator
AL072_23010	COG1192	Involved in chromosome partitioning
AL072_23015	COG4191	Histidine kinase
AL072_23020	COG0467	Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction
AL072_23025	COG0745	RESPONSE REGULATOR receiver
AL072_23035	COG1960	acyl-CoA dehydrogenase activity
AL072_23065	COG3210	domain, Protein
AL072_23070	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
AL072_23085	COG4172	Belongs to the ABC transporter superfamily
AL072_23100	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AL072_23115	COG0438	transferase activity, transferring glycosyl groups
AL072_23120	COG0588	phosphoglycerate mutase activity
AL072_23135	COG0583	DNA-binding transcription factor activity
AL072_23145	COG1846	Transcriptional regulator
AL072_23155	COG0583	DNA-binding transcription factor activity
AL072_23160	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
AL072_23170	COG3220	belongs to the UPF0276 family
AL072_23195	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
AL072_23200	COG1126	abc transporter atp-binding protein
AL072_23205	COG0765	amino acid transport
AL072_23210	COG0765	amino acid transport
AL072_23215	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AL072_23235	COG0583	DNA-binding transcription factor activity
AL072_23305	COG0583	DNA-binding transcription factor activity
AL072_23310	COG2814	Major facilitator Superfamily
AL072_23315	COG0667	Aldo Keto reductase
AL072_23345	COG2884	Cell division ATP-binding protein ftsE
AL072_23375	COG1132	(ABC) transporter
AL072_23385	COG2217	Heavy metal translocating P-type atpase
AL072_23395	COG2610	gluconate transmembrane transporter activity
AL072_23400	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
AL072_23405	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
AL072_23410	COG1028	Short-chain dehydrogenase reductase Sdr
AL072_23445	COG0129	dihydroxy-acid dehydratase activity
AL072_23450	COG1846	Transcriptional regulator
AL072_23455	COG1566	PFAM secretion protein HlyD family protein
AL072_23500	COG0450	alkyl hydroperoxide reductase
AL072_23505	COG0583	DNA-binding transcription factor activity
AL072_23515	COG0287	Prephenate dehydrogenase
AL072_23525	COG0693	protein deglycase activity
AL072_23530	COG2224	Isocitrate lyase
AL072_23535	COG1396	sequence-specific DNA binding
AL072_23535	COG3800	Transcriptional regulator
AL072_23550	COG1280	lysine exporter protein (LysE YggA)
AL072_23555	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
AL072_23565	COG1121	(ABC) transporter
AL072_23570	COG1108	ABC-type Mn2 Zn2 transport systems permease components
AL072_23590	COG0347	Belongs to the P(II) protein family
AL072_23595	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AL072_23625	COG1045	serine acetyltransferase
AL072_23630	COG2080	2 iron, 2 sulfur cluster binding
AL072_23635	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
AL072_23640	COG1529	Aldehyde oxidase and xanthine dehydrogenase
AL072_23650	COG1280	lysine exporter protein (LysE YggA)
AL072_23655	COG2814	Major facilitator Superfamily
AL072_23670	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
AL072_23685	COG0564	pseudouridine synthase activity
AL072_23695	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
AL072_23705	COG0842	Transport permease protein
AL072_23710	COG1129	ABC transporter
AL072_23710	COG0842	Transport permease protein
AL072_23715	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AL072_23720	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
AL072_23725	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
AL072_23730	COG1609	Transcriptional regulator
AL072_23735	COG3265	gluconokinase activity
AL072_23745	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
AL072_23750	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
AL072_23755	COG0840	transmembrane signaling receptor activity
AL072_23760	COG3485	protocatechuate 3,4-dioxygenase
AL072_23765	COG3485	protocatechuate 3,4-dioxygenase
AL072_23775	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
AL072_23780	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AL072_23790	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
AL072_23795	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
AL072_23800	COG0683	leucine binding
AL072_23825	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AL072_23840	COG1126	abc transporter atp-binding protein
AL072_23845	COG0765	amino acid transport
AL072_23850	COG4597	amino acid ABC transporter
AL072_23855	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AL072_23865	COG4774	siderophore transport
AL072_23870	COG1120	ATPase activity
AL072_23880	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AL072_23925	COG0243	molybdopterin cofactor binding
AL072_23925	COG3383	formate dehydrogenase (NAD+) activity
AL072_23930	COG0437	4 iron, 4 sulfur cluster binding
AL072_23935	COG2864	formate dehydrogenase
AL072_23940	COG1012	belongs to the aldehyde dehydrogenase family
AL072_23955	COG2205	protein histidine kinase activity
AL072_23955	COG2202	Pas domain
AL072_23975	COG0183	Belongs to the thiolase family
AL072_23980	COG2050	protein possibly involved in aromatic compounds catabolism
AL072_23985	COG1250	3-hydroxyacyl-CoA dehydrogenase
AL072_23990	COG1024	Enoyl-CoA hydratase
AL072_23995	COG1012	belongs to the aldehyde dehydrogenase family
AL072_24000	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AL072_24005	COG2151	metal-sulfur cluster biosynthetic enzyme
AL072_24010	COG3396	Phenylacetate-CoA oxygenase
AL072_24015	COG3460	Phenylacetate-CoA oxygenase
AL072_24020	COG3396	Phenylacetate-CoA oxygenase
AL072_24035	COG0784	Response regulator, receiver
AL072_24035	COG2198	Histidine kinase
AL072_24035	COG2205	protein histidine kinase activity
AL072_24050	COG1764	response to oxidative stress
AL072_24070	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
AL072_24095	COG0587	DNA-directed DNA polymerase activity
AL072_24120	COG0405	Gamma-glutamyltransferase
AL072_24140	COG2205	protein histidine kinase activity
AL072_24140	COG0784	Response regulator, receiver
AL072_24175	COG0848	biopolymer transport protein
AL072_24190	COG0671	phosphoesterase, PA-phosphatase related
AL072_24195	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
AL072_24200	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
AL072_24210	COG0793	Belongs to the peptidase S41A family
AL072_24250	COG1295	ribonuclease BN
AL072_24265	COG4977	sequence-specific DNA binding
AL072_24265	COG1917	Cupin 2, conserved barrel domain protein
AL072_24290	COG1024	Enoyl-CoA hydratase
AL072_24300	COG0559	Belongs to the binding-protein-dependent transport system permease family
AL072_24325	COG1181	Belongs to the D-alanine--D-alanine ligase family
AL072_24325	COG2918	glutathione biosynthetic process
AL072_24355	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
AL072_24355	COG2885	chlorophyll binding
AL072_24430	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
AL072_24455	COG4948	Mandelate Racemase Muconate Lactonizing
AL072_24460	COG0583	DNA-binding transcription factor activity
AL072_24480	COG1157	protein secretion by the type III secretion system
AL072_24485	COG0745	RESPONSE REGULATOR receiver
AL072_24490	COG1278	Cold shock
AL072_24515	COG0784	Response regulator, receiver
AL072_24515	COG2198	Histidine kinase
AL072_24515	COG5002	protein histidine kinase activity
AL072_24520	COG0835	chemotaxis
AL072_24525	COG0643	Histidine kinase
AL072_24525	COG2198	Histidine kinase
AL072_24550	COG2204	response regulator
AL072_24555	COG1840	ABC-type Fe3 transport system, periplasmic component
AL072_24565	COG3842	ATPase activity
AL072_24570	COG0546	phosphoglycolate phosphatase activity
AL072_24595	COG0840	transmembrane signaling receptor activity
AL072_24610	COG0411	ABC transporter
AL072_24625	COG0686	Belongs to the AlaDH PNT family
AL072_24630	COG1522	sequence-specific DNA binding
AL072_24635	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
AL072_24685	COG0306	phosphate transporter
AL072_24695	COG2205	protein histidine kinase activity
AL072_24695	COG2202	Pas domain
AL072_24725	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AL072_24730	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AL072_24730	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AL072_24735	COG1309	transcriptional regulator
AL072_24740	COG0667	Aldo Keto reductase
AL072_24750	COG2084	Dehydrogenase
AL072_24755	COG3622	Belongs to the hyi family
AL072_24760	COG1902	pentaerythritol trinitrate reductase activity
AL072_24760	COG0446	pyridine nucleotide-disulphide oxidoreductase
AL072_24765	COG1802	Transcriptional regulator
AL072_24770	COG0673	inositol 2-dehydrogenase activity
AL072_24775	COG0861	Integral membrane protein TerC family
AL072_24780	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
AL072_24790	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
AL072_24805	COG1309	transcriptional regulator
AL072_24825	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
AL072_24830	COG1028	Short-chain dehydrogenase reductase Sdr
AL072_24835	COG1309	transcriptional regulator
AL072_24840	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AL072_24850	COG2721	sulfolactate sulfo-lyase activity
AL072_24855	COG1904	glucuronate isomerase
AL072_24860	COG1802	Transcriptional regulator
AL072_24865	COG1917	Cupin 2, conserved barrel domain protein
AL072_24870	COG1028	Short-chain dehydrogenase reductase Sdr
AL072_24875	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
AL072_24880	COG1803	Methylglyoxal synthase
AL072_24885	COG1802	Transcriptional regulator
AL072_24910	COG2723	6-phospho-beta-galactosidase activity
AL072_24920	COG2233	PERMEase
AL072_24935	COG0596	Alpha beta hydrolase
AL072_24965	COG4644	lycopene metabolic process
AL072_24985	COG2197	response regulator
AL072_25025	COG0438	transferase activity, transferring glycosyl groups
AL072_25030	COG2801	Transposase and inactivated derivatives
AL072_25100	COG2189	Belongs to the N(4) N(6)-methyltransferase family
AL072_25115	COG1278	Cold shock
AL072_25135	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AL072_25150	COG0531	amino acid
AL072_25160	COG4303	Ethanolamine ammonia lyase large subunit
AL072_25180	COG1280	lysine exporter protein (LysE YggA)
AL072_25200	COG3920	Histidine kinase
AL072_25215	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
AL072_25230	COG2039	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
AL072_25235	COG0583	DNA-binding transcription factor activity
AL072_25290	COG0559	Belongs to the binding-protein-dependent transport system permease family
AL072_25350	COG2099	Precorrin-6x reductase
AL072_25380	COG1797	cobyrinic acid a,c-diamide synthase activity
AL072_25385	COG0778	Nitroreductase
AL072_25390	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
AL072_25395	COG1971	Probably functions as a manganese efflux pump
AL072_25400	COG0402	S-adenosylhomocysteine deaminase activity
AL072_25410	COG1309	transcriptional regulator
AL072_25415	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AL072_25420	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AL072_25440	COG0784	Response regulator, receiver
AL072_25450	COG3214	Protein conserved in bacteria
AL072_25455	COG1522	sequence-specific DNA binding
AL072_25465	COG4644	lycopene metabolic process
AL072_25505	COG3437	response regulator, receiver
AL072_25520	COG1522	sequence-specific DNA binding
AL072_25540	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AL072_25550	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
AL072_25560	COG3206	protein involved in exopolysaccharide biosynthesis
AL072_25560	COG0489	protein tyrosine kinase activity
AL072_25575	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
AL072_25585	COG1131	(ABC) transporter
AL072_25600	COG0643	Histidine kinase
AL072_25600	COG2198	Histidine kinase
AL072_25610	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
AL072_25620	COG2201	protein-glutamate methylesterase activity
AL072_25625	COG0835	chemotaxis
AL072_25630	COG0840	transmembrane signaling receptor activity
AL072_25635	COG1776	CheC inhibitor of MCP methylation
AL072_25635	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
AL072_25640	COG2201	protein-glutamate methylesterase activity
AL072_25650	COG1464	Belongs to the NlpA lipoprotein family
AL072_25655	COG2011	ABC-type metal ion transport system permease component
AL072_25660	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
AL072_25665	COG1464	Belongs to the NlpA lipoprotein family
AL072_25680	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
AL072_25690	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
AL072_25715	COG1530	ribonuclease E activity
AL072_25730	COG1802	Transcriptional regulator
AL072_25760	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
AL072_25775	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
AL072_25820	COG0511	ligase activity, forming carbon-carbon bonds
AL072_25825	COG0511	ligase activity, forming carbon-carbon bonds
AL072_25825	COG5016	pyruvate
AL072_25830	COG2188	Transcriptional regulator
AL072_25835	COG0439	Biotin carboxylase
AL072_25840	COG1042	CoA-binding domain protein
AL072_25840	COG0045	succinate-CoA ligase (ADP-forming) activity
AL072_25840	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AL072_25855	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AL072_25860	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AL072_25885	COG3012	SEC-C Motif Domain Protein
AL072_25920	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AL072_25940	COG0454	-acetyltransferase
AL072_25945	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
AL072_25950	COG0564	pseudouridine synthase activity
AL072_25980	COG0116	Belongs to the methyltransferase superfamily
AL072_25980	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
AL072_25990	COG1028	Short-chain dehydrogenase reductase Sdr
AL072_25995	COG0840	transmembrane signaling receptor activity
AL072_26010	COG3383	formate dehydrogenase (NAD+) activity
AL072_26025	COG0583	DNA-binding transcription factor activity
AL072_26035	COG0583	DNA-binding transcription factor activity
AL072_26040	COG1028	Short-chain dehydrogenase reductase Sdr
AL072_26045	COG3959	Transketolase, thiamine diphosphate binding domain
AL072_26050	COG3958	Transketolase
AL072_26055	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
AL072_26060	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
AL072_26065	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
AL072_26070	COG2084	Dehydrogenase
AL072_26075	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AL072_26085	COG0277	FAD linked oxidase domain protein
AL072_26095	COG3842	ATPase activity
AL072_26100	COG1176	ABC-type spermidine putrescine transport system, permease component I
AL072_26105	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AL072_26125	COG1802	Transcriptional regulator
AL072_26125	COG4626	Terminase
AL072_26150	COG2205	protein histidine kinase activity
AL072_26155	COG0745	RESPONSE REGULATOR receiver
AL072_26170	COG1136	(ABC) transporter
AL072_26185	COG2076	Multidrug Resistance protein
AL072_26260	COG4964	Belongs to the GSP D family
AL072_26310	COG4214	carbohydrate transport
AL072_26315	COG4213	ABC transporter substrate-binding protein
AL072_26320	COG2115	Belongs to the xylose isomerase family
AL072_26325	COG1070	Carbohydrate kinase
AL072_26330	COG1609	Transcriptional regulator
AL072_26350	COG2353	YceI-like domain
AL072_26370	COG0840	transmembrane signaling receptor activity
AL072_26370	COG2972	Histidine kinase
AL072_26430	COG0411	ABC transporter
AL072_26460	COG3842	ATPase activity
AL072_26465	COG1176	ABC-type spermidine putrescine transport system, permease component I
AL072_26550	COG0375	protein maturation
AL072_26560	COG2116	formate transmembrane transporter activity
AL072_26565	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
AL072_26575	COG3260	NADH ubiquinone oxidoreductase 20
AL072_26580	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AL072_26585	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
AL072_26585	COG3261	NADH dehydrogenase
AL072_26590	COG0651	ATP synthesis coupled electron transport
AL072_26595	COG4237	Hydrogenase 4 membrane
AL072_26600	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
AL072_26605	COG0650	Formate hydrogenlyase subunit 4
AL072_26610	COG0651	ATP synthesis coupled electron transport
AL072_26615	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
AL072_26620	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
AL072_26625	COG3383	formate dehydrogenase (NAD+) activity
AL072_26635	COG0583	DNA-binding transcription factor activity
AL072_26660	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
AL072_26675	COG1012	belongs to the aldehyde dehydrogenase family
AL072_26680	COG1028	Short-chain dehydrogenase reductase Sdr
AL072_26685	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AL072_26690	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
AL072_26695	COG4221	oxidoreductase activity
AL072_26705	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AL072_26715	COG4521	taurine ABC transporter
AL072_26720	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AL072_26725	COG1320	monovalent cation:proton antiporter activity
AL072_26730	COG2212	antiporter activity
AL072_26735	COG1863	multisubunit Na H antiporter MnhE subunit
AL072_26740	COG0651	ATP synthesis coupled electron transport
AL072_26745	COG1006	Multisubunit Na H antiporter MnhC subunit
AL072_26750	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
AL072_26750	COG2111	Na H antiporter
AL072_26755	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
AL072_26765	COG4191	Histidine kinase
AL072_26770	COG4566	intracellular signal transduction
AL072_26775	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
AL072_26795	COG0318	PFAM AMP-dependent synthetase and ligase
AL072_26800	COG1960	acyl-CoA dehydrogenase activity
AL072_26805	COG5285	phytanoyl-CoA dioxygenase
AL072_26830	COG0583	DNA-binding transcription factor activity
AL072_26835	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AL072_26840	COG4948	Mandelate Racemase Muconate Lactonizing
AL072_26850	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
AL072_26855	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
AL072_26860	COG2223	nitrite transmembrane transporter activity
AL072_26875	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AL072_26880	COG0697	spore germination
AL072_26890	COG1454	alcohol dehydrogenase
AL072_26890	COG1012	belongs to the aldehyde dehydrogenase family
AL072_26910	COG3474	cytochrome
AL072_26920	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AL072_26935	COG0459	protein refolding
AL072_27000	COG1129	ABC transporter
AL072_27000	COG0842	Transport permease protein
AL072_27005	COG1131	(ABC) transporter
AL072_27015	COG0189	ligase activity
AL072_27025	COG1795	PFAM Formaldehyde-activating enzyme (Fae)
AL072_27050	COG2037	Catalyzes the transfer of a formyl group from 5-formyl tetrahydromethanopterin (5-formyl-H(4)MPT) to methanofuran (MFR) so as to produce formylmethanofuran (formyl-MFR) and tetrahydromethanopterin (H(4)MPT)
AL072_27055	COG1229	Formylmethanofuran dehydrogenase subunit A
AL072_27060	COG1029	Formylmethanofuran dehydrogenase, subunit B
AL072_27070	COG0702	epimerase
AL072_27075	COG3252	Catalyzes the hydrolysis of methenyl-H(4)MPT( ) to 5- formyl-H(4)MPT
AL072_27115	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AL072_27125	COG1172	Belongs to the binding-protein-dependent transport system permease family
AL072_27130	COG1172	Belongs to the binding-protein-dependent transport system permease family
AL072_27135	COG1129	ABC transporter
AL072_27140	COG1879	ABC-type sugar transport system periplasmic component
AL072_27145	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
AL072_27150	COG1349	DNA-binding transcription factor activity
AL072_27155	COG1024	Enoyl-CoA hydratase
AL072_27160	COG0183	Belongs to the thiolase family
AL072_27165	COG3956	TIGRFAM MazG family protein
AL072_27175	COG2814	Major facilitator Superfamily
AL072_27185	COG2116	formate transmembrane transporter activity
AL072_27190	COG0148	phosphopyruvate hydratase activity
AL072_27200	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
AL072_27205	COG0697	spore germination
AL072_27235	COG0625	glutathione transferase activity
AL072_27240	COG0583	DNA-binding transcription factor activity
AL072_27245	COG1028	Short-chain dehydrogenase reductase Sdr
AL072_27255	COG0583	DNA-binding transcription factor activity
AL072_27260	COG0300	oxidoreductase activity
AL072_27305	COG0402	S-adenosylhomocysteine deaminase activity
AL072_27310	COG1116	anion transmembrane transporter activity
AL072_27315	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AL072_27325	COG1802	Transcriptional regulator
AL072_27335	COG1177	transmembrane transport
AL072_27340	COG1176	ABC-type spermidine putrescine transport system, permease component I
AL072_27380	COG0251	oxidation-reduction process
AL072_27390	COG0251	oxidation-reduction process
AL072_27405	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AL072_27410	COG0765	amino acid transport
AL072_27415	COG1126	abc transporter atp-binding protein
AL072_27420	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AL072_27425	COG4566	intracellular signal transduction
AL072_27430	COG4566	intracellular signal transduction
AL072_27435	COG4191	Histidine kinase
AL072_27440	COG0840	transmembrane signaling receptor activity
AL072_27445	COG0546	phosphoglycolate phosphatase activity
AL072_27455	COG0243	molybdopterin cofactor binding
AL072_27475	COG0300	oxidoreductase activity
AL072_27480	COG0179	Fumarylacetoacetate (FAA) hydrolase
AL072_27485	COG1802	Transcriptional regulator
AL072_27515	COG1216	Glycosyl transferase, family 2
AL072_27515	COG0438	transferase activity, transferring glycosyl groups
AL072_27540	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
AL072_27595	COG0477	Major facilitator Superfamily
AL072_27605	COG3967	Belongs to the short-chain dehydrogenases reductases (SDR) family
AL072_27620	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
AL072_27640	COG0406	alpha-ribazole phosphatase activity
AL072_27660	COG1028	Short-chain dehydrogenase reductase Sdr
AL072_27670	COG0318	PFAM AMP-dependent synthetase and ligase
AL072_27680	COG1414	Transcriptional regulator
AL072_27695	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
AL072_27700	COG0066	3-isopropylmalate dehydratase activity
AL072_27715	COG0559	Belongs to the binding-protein-dependent transport system permease family
AL072_27730	COG0410	ABC transporter
AL072_27735	COG0277	FAD linked oxidase domain protein
AL072_27750	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
AL072_27755	COG0840	transmembrane signaling receptor activity
AL072_27760	COG0588	phosphoglycerate mutase activity
AL072_27780	COG1918	ferrous iron import across plasma membrane
AL072_27780	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
AL072_27810	COG1321	iron dependent repressor
AL072_27815	COG1914	H( )-stimulated, divalent metal cation uptake system
AL072_27825	COG0644	oxidoreductase
AL072_27830	COG4566	intracellular signal transduction
AL072_27835	COG4566	intracellular signal transduction
AL072_27845	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
AL072_27865	COG4977	sequence-specific DNA binding
AL072_27885	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AL072_27910	COG2855	membrane
AL072_27945	COG1393	Belongs to the ArsC family
AL072_27950	COG0798	PFAM Bile acid sodium symporter
AL072_27955	COG0431	NADPH-dependent FMN reductase
AL072_27970	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
AL072_27985	COG0683	leucine binding
AL072_27990	COG4191	Histidine kinase
AL072_27995	COG4566	intracellular signal transduction
AL072_28000	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
AL072_28005	COG4654	Cytochrome c, class I
AL072_28025	COG2010	Cytochrome c
AL072_28050	COG4372	Transposase
AL072_28055	COG3436	PFAM IS66 Orf2 family protein
AL072_28095	COG1522	sequence-specific DNA binding
AL072_28100	COG2271	Major facilitator Superfamily
AL072_28105	COG1028	Short-chain dehydrogenase reductase Sdr
AL072_28115	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
AL072_28115	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
AL072_28130	COG0564	pseudouridine synthase activity
AL072_28135	COG0784	Response regulator, receiver
AL072_28135	COG2205	protein histidine kinase activity
AL072_28140	COG1741	Belongs to the pirin family
AL072_28155	COG0745	RESPONSE REGULATOR receiver
AL072_28160	COG2198	Histidine kinase
AL072_28160	COG0643	Histidine kinase
AL072_28165	COG0835	chemotaxis
AL072_28170	COG0840	transmembrane signaling receptor activity
AL072_28185	COG2201	protein-glutamate methylesterase activity
AL072_28195	COG3768	UPF0283 membrane protein
AL072_28200	COG3106	COG3106 Predicted ATPase
AL072_28240	COG0559	Belongs to the binding-protein-dependent transport system permease family
AL072_28255	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AL072_28265	COG1917	Cupin 2, conserved barrel domain protein
AL072_28265	COG4977	sequence-specific DNA binding
AL072_28275	COG0840	transmembrane signaling receptor activity
AL072_28285	COG2205	protein histidine kinase activity
AL072_28290	COG0745	RESPONSE REGULATOR receiver
AL072_28320	COG1024	Enoyl-CoA hydratase
AL072_28325	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
AL072_28330	COG1960	acyl-CoA dehydrogenase activity
AL072_28335	COG0183	Belongs to the thiolase family
AL072_28340	COG1960	acyl-CoA dehydrogenase activity
AL072_28355	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
AL072_28365	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
AL072_28375	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
AL072_28405	COG1766	The M ring may be actively involved in energy transduction
AL072_28415	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
AL072_28420	COG1338	Plays a role in the flagellum-specific transport system
AL072_28430	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
AL072_28445	COG0745	RESPONSE REGULATOR receiver
AL072_28450	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AL072_28460	COG5443	negative regulation of bacterial-type flagellum assembly
AL072_28490	COG1157	protein secretion by the type III secretion system
AL072_28500	COG1558	bacterial-type flagellum-dependent cell motility
AL072_28505	COG1677	Flagellar hook-basal body complex protein FliE
AL072_28510	COG1987	bacterial-type flagellum assembly
AL072_28530	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
AL072_28540	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
AL072_28545	COG0569	domain protein
AL072_28550	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
AL072_28600	COG1116	anion transmembrane transporter activity
AL072_28605	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AL072_28610	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AL072_28615	COG1250	3-hydroxyacyl-CoA dehydrogenase
AL072_28620	COG0351	phosphomethylpyrimidine kinase
AL072_28625	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AL072_28675	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
AL072_28680	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
AL072_28685	COG1127	ABC transporter
AL072_28690	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
AL072_28690	COG3218	ABC-type transport auxiliary lipoprotein component
AL072_28710	COG2202	Pas domain
AL072_28710	COG2205	protein histidine kinase activity
AL072_28720	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
AL072_28750	COG0521	Mo-molybdopterin cofactor biosynthetic process
AL072_28755	COG0741	lytic transglycosylase activity
AL072_28760	COG1573	uracil-dna glycosylase
AL072_28775	COG3283	Transcriptional regulator of aromatic amino acids metabolism
AL072_28780	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AL072_28795	COG1139	Iron-sulfur cluster binding protein
AL072_28800	COG0247	lactate metabolic process
AL072_28810	COG2186	Transcriptional regulator
AL072_28820	COG2204	response regulator
AL072_28835	COG0372	Belongs to the citrate synthase family
AL072_28850	COG0784	Response regulator, receiver
AL072_28850	COG2205	protein histidine kinase activity
AL072_28855	COG0477	Major facilitator Superfamily
AL072_28860	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AL072_28875	COG1737	Transcriptional regulator
AL072_28880	COG0179	Fumarylacetoacetate (FAA) hydrolase
AL072_28895	COG3604	Transcriptional regulator
AL072_28910	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
AL072_28925	COG3290	protein histidine kinase activity
AL072_28925	COG3829	transcription factor binding
AL072_28930	COG1312	Catalyzes the dehydration of D-mannonate
AL072_28935	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
AL072_28945	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
AL072_28950	COG1063	alcohol dehydrogenase
AL072_28955	COG0246	Mannitol dehydrogenase
AL072_28960	COG1802	Transcriptional regulator
AL072_28965	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
AL072_29010	COG3920	Histidine kinase
AL072_29025	COG1032	radical SAM domain protein
AL072_29045	COG2801	Transposase and inactivated derivatives
AL072_29050	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
AL072_29060	COG0573	inorganic phosphate transmembrane transporter activity
AL072_29065	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
AL072_29075	COG0625	glutathione transferase activity
AL072_29080	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AL072_29120	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AL072_29140	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AL072_29145	COG1116	anion transmembrane transporter activity
AL072_29245	COG4397	Mu-like prophage major head subunit gpT
AL072_29270	COG4373	Mu-like prophage FluMu protein gp28
AL072_29285	COG0640	Transcriptional regulator
AL072_29415	COG0598	Magnesium transport protein CorA
AL072_29425	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
AL072_29440	COG2814	Major facilitator Superfamily
AL072_29455	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AL072_29475	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AL072_29495	COG1538	Outer membrane efflux protein
AL072_29515	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
AL072_29535	COG2197	response regulator
AL072_29540	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
AL072_29540	COG2885	chlorophyll binding
AL072_29575	COG0411	ABC transporter
AL072_29595	COG1940	carbohydrate kinase activity
AL072_29615	COG0463	Glycosyl transferase, family 2
AL072_29635	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AL072_29635	COG4191	Histidine kinase
AL072_29640	COG1238	metal cluster binding
AL072_29665	COG1858	cytochrome C peroxidase
AL072_29680	COG4191	Histidine kinase
AL072_29695	COG0840	transmembrane signaling receptor activity
AL072_29705	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
AL072_29730	COG3842	ATPase activity
AL072_29735	COG3842	ATPase activity
AL072_29745	COG1349	DNA-binding transcription factor activity
AL072_29750	COG0516	GMP reductase activity
AL072_29760	COG1529	Aldehyde oxidase and xanthine dehydrogenase
AL072_29760	COG2010	Cytochrome c
AL072_29775	COG0305	Participates in initiation and elongation during chromosome replication
AL072_29780	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
AL072_29785	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
AL072_29790	COG1127	ABC transporter
AL072_29795	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
AL072_29805	COG3772	lysozyme
AL072_29900	COG0616	signal peptide processing
AL072_29910	COG4626	Terminase
AL072_29910	COG1802	Transcriptional regulator
AL072_30030	COG0582	viral genome integration into host DNA
AL072_30050	COG2249	NAD(P)H dehydrogenase (quinone) activity
AL072_30055	COG2723	6-phospho-beta-galactosidase activity
AL072_30070	COG2086	electron transfer activity
AL072_30080	COG1250	3-hydroxyacyl-CoA dehydrogenase
AL072_30110	COG1609	Transcriptional regulator
AL072_30115	COG3608	succinylglutamate desuccinylase aspartoacylase
AL072_30120	COG0251	oxidation-reduction process
AL072_30135	COG4597	amino acid ABC transporter
AL072_30140	COG0765	amino acid transport
AL072_30170	COG4178	(ABC) transporter
AL072_30175	COG4993	Dehydrogenase
AL072_30200	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AL072_30205	COG2169	Transcriptional regulator
AL072_30205	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
AL072_30235	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
AL072_30245	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AL072_30250	COG0840	transmembrane signaling receptor activity
AL072_30285	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
AL072_30295	COG0411	ABC transporter
AL072_30310	COG0154	amidase activity
AL072_30315	COG1960	acyl-CoA dehydrogenase activity
AL072_30330	COG4638	Rieske (2fe-2S)
AL072_30340	COG1028	Short-chain dehydrogenase reductase Sdr
AL072_30350	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AL072_30360	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AL072_30365	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AL072_30380	COG1309	transcriptional regulator
AL072_30385	COG2814	Major facilitator Superfamily
AL072_30390	COG0765	amino acid transport
AL072_30395	COG0765	amino acid transport
AL072_30400	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AL072_30405	COG1126	abc transporter atp-binding protein
AL072_30410	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AL072_30415	COG1609	Transcriptional regulator
AL072_30445	COG1192	Involved in chromosome partitioning
AL072_30450	COG1475	DNA binding
AL072_30460	COG0583	DNA-binding transcription factor activity
AL072_30465	COG0318	PFAM AMP-dependent synthetase and ligase
AL072_30475	COG3275	phosphorelay sensor kinase activity
AL072_30480	COG3279	Response regulator of the LytR AlgR family
AL072_30485	COG1794	racemase activity, acting on amino acids and derivatives
AL072_30490	COG1295	ribonuclease BN
AL072_30505	COG1966	Carbon starvation protein
AL072_30515	COG0583	DNA-binding transcription factor activity
AL072_30520	COG2851	Citrate transporter
AL072_30540	COG0642	Histidine kinase
AL072_30545	COG0745	RESPONSE REGULATOR receiver
AL072_30555	COG0861	Integral membrane protein TerC family
AL072_30585	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
AL072_30590	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
AL072_30605	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
AL072_30610	COG1845	cytochrome c oxidase, subunit III
AL072_30615	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
AL072_30620	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
AL072_30625	COG0477	Major facilitator Superfamily
AL072_30660	COG1335	isochorismatase
AL072_30665	COG2309	aminopeptidase activity
AL072_30670	COG0596	Alpha beta hydrolase
AL072_30675	COG3473	Maleate cis-trans isomerase
AL072_30680	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AL072_30690	COG0411	ABC transporter
AL072_30700	COG0559	Belongs to the binding-protein-dependent transport system permease family
AL072_30705	COG0683	leucine binding
AL072_30710	COG1988	membrane-bound metal-dependent
AL072_30715	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AL072_30735	COG2198	Histidine kinase
AL072_30735	COG0784	Response regulator, receiver
AL072_30735	COG5002	protein histidine kinase activity
AL072_30755	COG0411	ABC transporter
AL072_30795	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
AL072_30800	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AL072_30805	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
AL072_30820	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
AL072_30825	COG0583	DNA-binding transcription factor activity
AL072_30850	COG0667	Aldo Keto reductase
AL072_30855	COG2272	Belongs to the type-B carboxylesterase lipase family
AL072_30880	COG1073	alpha beta
AL072_30900	COG0667	Aldo Keto reductase
AL072_30905	COG0656	L-ascorbic acid biosynthetic process
AL072_30965	COG0129	dihydroxy-acid dehydratase activity
AL072_30975	COG4214	carbohydrate transport
AL072_30980	COG1129	ABC transporter
AL072_31015	COG1879	ABC-type sugar transport system periplasmic component
AL072_31020	COG1129	ABC transporter
AL072_31025	COG1172	Belongs to the binding-protein-dependent transport system permease family
AL072_31030	COG1172	Belongs to the binding-protein-dependent transport system permease family
AL072_31065	COG0501	Belongs to the peptidase M48B family
AL072_31080	COG0754	glutathionylspermidine amidase activity
AL072_31090	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
AL072_31095	COG1056	cytidyltransferase-related domain
AL072_31095	COG1051	belongs to the nudix hydrolase family
AL072_31165	COG1122	ATPase activity
AL072_31175	COG1268	BioY protein
AL072_31180	COG0840	transmembrane signaling receptor activity
AL072_31190	COG0656	L-ascorbic acid biosynthetic process
AL072_31195	COG4221	oxidoreductase activity
AL072_31205	COG2202	Pas domain
AL072_31205	COG3920	Histidine kinase
AL072_31220	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AL072_31225	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AL072_31235	COG0243	molybdopterin cofactor binding
AL072_31240	COG1648	precorrin-2 dehydrogenase activity
AL072_31240	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
AL072_31265	COG3243	poly(R)-hydroxyalkanoic acid synthase
AL072_31270	COG0784	Response regulator, receiver
AL072_31270	COG4191	Histidine kinase
AL072_31310	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AL072_31350	COG1108	ABC-type Mn2 Zn2 transport systems permease components
AL072_31355	COG1121	(ABC) transporter
AL072_31365	COG4774	siderophore transport
AL072_31375	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AL072_31380	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
AL072_31385	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
AL072_31405	COG1706	bacterial-type flagellum-dependent cell motility
AL072_31415	COG1256	bacterial-type flagellum assembly
AL072_31420	COG1749	Flagellar hook protein flgE
AL072_31425	COG1360	Flagellar Motor Protein
AL072_31430	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
AL072_31440	COG4786	Flagellar basal body rod
AL072_31445	COG4786	Flagellar basal body rod
AL072_31465	COG1192	Involved in chromosome partitioning
AL072_31550	COG0463	Glycosyl transferase, family 2
AL072_31560	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
AL072_31565	COG2264	protein methyltransferase activity
AL072_31570	COG0438	transferase activity, transferring glycosyl groups
AL072_31570	COG0297	glycogen (starch) synthase activity
AL072_31650	COG3335	DDE superfamily endonuclease
AL072_31680	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
AL072_31690	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
AL072_31710	COG0438	transferase activity, transferring glycosyl groups
AL072_31715	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AL072_31760	COG1032	radical SAM domain protein
AL072_31765	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AL072_31790	COG0574	Belongs to the PEP-utilizing enzyme family
AL072_31790	COG3848	Pyruvate phosphate dikinase
AL072_31795	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
AL072_31840	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
AL072_31850	COG0022	dehydrogenase e1 component
AL072_31855	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
AL072_31865	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
AL072_32000	COG0675	Transposase, IS605 OrfB family
AL072_32065	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
AL072_32085	COG0107	imidazoleglycerol-phosphate synthase activity
AL072_32090	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
AL072_32135	COG4122	O-methyltransferase activity
AL072_32165	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
AL072_32210	COG1487	ribonuclease activity
AL072_32225	COG4638	Rieske (2fe-2S)
AL072_32295	COG0463	Glycosyl transferase, family 2
AL072_32325	COG2801	Transposase and inactivated derivatives
AL072_32350	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
AL072_32355	COG1086	Polysaccharide biosynthesis protein
AL072_32370	COG1132	(ABC) transporter
AL072_32385	COG0662	Cupin 2, conserved barrel domain protein
AL072_32385	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
AL072_32395	COG2274	protein secretion by the type I secretion system
AL072_32400	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AL072_32420	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AL072_32425	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
AL072_32440	COG1091	dTDP-4-dehydrorhamnose reductase activity
AL072_32445	COG1088	dTDP-glucose 4,6-dehydratase activity
AL072_32450	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
AL072_32455	COG0438	transferase activity, transferring glycosyl groups
AL072_32455	COG1216	Glycosyl transferase, family 2
AL072_32470	COG0175	sulfate reduction
AL072_32475	COG2895	sulfate adenylyltransferase (ATP) activity
AL072_32475	COG0529	Catalyzes the synthesis of activated sulfate
AL072_32495	COG0457	Tetratricopeptide repeat
AL072_32495	COG0859	PFAM glycosyl transferase family 9
AL072_32515	COG3416	Protein conserved in bacteria
AL072_32535	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
AL072_32545	COG1686	Belongs to the peptidase S11 family
AL072_32555	COG0789	Transcriptional regulator
AL072_32560	COG2217	Heavy metal translocating P-type atpase
AL072_32575	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
AL072_32660	COG1192	Involved in chromosome partitioning
AL072_32685	COG3436	PFAM IS66 Orf2 family protein
AL072_32690	COG2433	Pfam Transposase IS66
AL072_32905	COG1475	DNA binding
AL072_33065	COG4974	Belongs to the 'phage' integrase family