locus-tag	class	description
Achr_10	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
Achr_1000	COG2132	Multicopper oxidase
Achr_10050	COG1104	cysteine desulfurase activity
Achr_10070	COG0316	Belongs to the HesB IscA family
Achr_10080	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
Achr_10090	COG0443	Heat shock 70 kDa protein
Achr_10120	COG0105	UTP biosynthetic process
Achr_10160	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
Achr_10170	COG0124	histidyl-tRNA synthetase
Achr_1020	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
Achr_10200	COG1160	GTP binding
Achr_10220	COG0436	Aminotransferase
Achr_10230	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
Achr_10270	COG3647	Membrane
Achr_10280	COG2356	endonuclease I
Achr_10290	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
Achr_1030	COG0408	coproporphyrinogen oxidase activity
Achr_10330	COG4993	Dehydrogenase
Achr_10350	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
Achr_10370	COG0371	Dehydrogenase
Achr_10380	COG2909	trisaccharide binding
Achr_10460	COG0739	heme binding
Achr_10480	COG1570	exodeoxyribonuclease VII activity
Achr_1050	COG0009	L-threonylcarbamoyladenylate synthase
Achr_10500	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
Achr_10510	COG0210	DNA helicase
Achr_10550	COG2132	Multicopper oxidase
Achr_10560	COG0590	tRNA wobble adenosine to inosine editing
Achr_10570	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
Achr_1060	COG0758	DNA mediated transformation
Achr_10600	COG1376	ErfK ybiS ycfS ynhG family protein
Achr_10600	COG1388	LysM domain
Achr_10610	COG2816	NAD+ diphosphatase activity
Achr_10640	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
Achr_10650	COG4536	flavin adenine dinucleotide binding
Achr_10670	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
Achr_10680	COG0228	four-way junction DNA binding
Achr_10690	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
Achr_1070	COG1652	LysM domain
Achr_10700	COG0336	Belongs to the RNA methyltransferase TrmD family
Achr_10710	COG0335	large ribosomal subunit rRNA binding
Achr_10780	COG1607	acyl-coa hydrolase
Achr_1080	COG0242	peptide deformylase activity
Achr_10800	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
Achr_10840	COG1804	L-carnitine dehydratase bile acid-inducible protein F
Achr_10860	COG4681	YaeQ
Achr_10880	COG1902	pentaerythritol trinitrate reductase activity
Achr_10900	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
Achr_10910	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
Achr_10960	COG1073	alpha beta
Achr_110	COG1686	Belongs to the peptidase S11 family
Achr_1100	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
Achr_11000	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
Achr_11010	COG0563	adenylate kinase activity
Achr_11020	COG1214	PFAM Peptidase M22, glycoprotease
Achr_11040	COG0742	ribosomal rna small subunit methyltransferase
Achr_11060	COG1131	(ABC) transporter
Achr_1110	COG0569	domain protein
Achr_11110	COG2226	methyltransferase
Achr_11120	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
Achr_11140	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
Achr_11150	COG0745	RESPONSE REGULATOR receiver
Achr_11160	COG2205	protein histidine kinase activity
Achr_11180	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
Achr_11190	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
Achr_11200	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
Achr_11210	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
Achr_11250	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
Achr_11260	COG2171	N-acyltransferase activity
Achr_11270	COG1393	Belongs to the ArsC family
Achr_1130	COG2818	Glycosylase
Achr_11320	COG0025	NhaP-type Na H and K H
Achr_11340	COG0436	Aminotransferase
Achr_11350	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
Achr_11360	COG0024	Methionine aminopeptidase
Achr_11380	COG0052	Belongs to the universal ribosomal protein uS2 family
Achr_11390	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
Achr_11400	COG0528	UMP kinase activity
Achr_11410	COG0233	cytoplasmic translational termination
Achr_11420	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
Achr_11440	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
Achr_11490	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
Achr_1150	COG0751	glycine-tRNA ligase activity
Achr_11500	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
Achr_11510	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
Achr_11520	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
Achr_11540	COG0825	malonyl-CoA metabolic process
Achr_11560	COG0504	CTP synthase activity
Achr_11570	COG2877	3-deoxy-8-phosphooctulonate synthase activity
Achr_1160	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
Achr_11600	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
Achr_11610	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
Achr_11620	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
Achr_11630	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
Achr_11640	COG0585	pseudouridine synthase activity
Achr_11650	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
Achr_11660	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
Achr_11710	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
Achr_11720	COG1546	Belongs to the CinA family
Achr_11730	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
Achr_11740	COG2137	regulation of response to DNA damage stimulus
Achr_11760	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
Achr_11770	COG3957	D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase
Achr_11810	COG0583	DNA-binding transcription factor activity
Achr_11840	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
Achr_11840	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
Achr_11850	COG3706	GGDEF domain
Achr_11870	COG0589	response to stress
Achr_1190	COG2837	iron assimilation
Achr_11900	COG0714	Associated with various cellular activities
Achr_11950	COG2925	Exonuclease
Achr_11970	COG0788	formyltetrahydrofolate deformylase activity
Achr_11980	COG0583	DNA-binding transcription factor activity
Achr_11990	COG3485	protocatechuate 3,4-dioxygenase
Achr_12000	COG3485	protocatechuate 3,4-dioxygenase
Achr_12010	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
Achr_12020	COG1414	Transcriptional regulator
Achr_12030	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
Achr_12040	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
Achr_12050	COG0183	Belongs to the thiolase family
Achr_12070	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
Achr_12080	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
Achr_12090	COG0656	L-ascorbic acid biosynthetic process
Achr_1210	COG2814	Major facilitator Superfamily
Achr_12140	COG1309	transcriptional regulator
Achr_12150	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
Achr_12160	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
Achr_12190	COG0582	viral genome integration into host DNA
Achr_1220	COG0318	PFAM AMP-dependent synthetase and ligase
Achr_1220	COG0204	Acyl-transferase
Achr_12360	COG1902	pentaerythritol trinitrate reductase activity
Achr_12380	COG3124	Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP
Achr_12450	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
Achr_12460	COG0693	protein deglycase activity
Achr_12470	COG2308	Evidence 4 Homologs of previously reported genes of
Achr_12500	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
Achr_12560	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
Achr_12570	COG2205	protein histidine kinase activity
Achr_12570	COG0784	Response regulator, receiver
Achr_12570	COG5002	protein histidine kinase activity
Achr_12600	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
Achr_12640	COG0500	methyltransferase
Achr_12680	COG3956	TIGRFAM MazG family protein
Achr_12690	COG3122	Protein conserved in bacteria
Achr_12710	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
Achr_12720	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
Achr_12740	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
Achr_12750	COG0628	permease
Achr_12760	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
Achr_12800	COG1295	ribonuclease BN
Achr_12850	COG0442	prolyl-tRNA aminoacylation
Achr_12870	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
Achr_12890	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
Achr_12910	COG2255	four-way junction helicase activity
Achr_12920	COG0824	Thioesterase
Achr_12980	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
Achr_12990	COG0602	queuosine metabolic process
Achr_13000	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
Achr_13030	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
Achr_13040	COG4783	chaperone-mediated protein folding
Achr_13050	COG0425	Belongs to the sulfur carrier protein TusA family
Achr_13060	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
Achr_13090	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
Achr_13100	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
Achr_13180	COG3174	membrane
Achr_13190	COG2205	protein histidine kinase activity
Achr_13230	COG0545	Peptidyl-prolyl cis-trans isomerase
Achr_13240	COG3339	Conserved Protein
Achr_13290	COG1362	aminopeptidase activity
Achr_13300	COG0564	pseudouridine synthase activity
Achr_13310	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
Achr_13320	COG2894	cell division
Achr_13330	COG0850	regulation of cytokinetic process
Achr_13350	COG1560	Kdo2-lipid A biosynthetic process
Achr_13360	COG2853	Lipoprotein
Achr_13430	COG3162	membrane
Achr_13440	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
Achr_13450	COG1253	flavin adenine dinucleotide binding
Achr_13470	COG3089	Belongs to the UPF0270 family
Achr_13490	COG1363	Peptidase, m42
Achr_13510	COG0367	asparagine synthase
Achr_13520	COG1846	Transcriptional regulator
Achr_13530	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
Achr_13530	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
Achr_13600	COG0271	Belongs to the BolA IbaG family
Achr_13750	COG2154	pterin-4-alpha-carbinolamine dehydratase
Achr_13840	COG2301	Belongs to the HpcH HpaI aldolase family
Achr_13850	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
Achr_13870	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
Achr_1390	COG3411	Ferredoxin
Achr_13910	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
Achr_13920	COG0527	aspartate kinase activity
Achr_13930	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
Achr_13970	COG2239	Acts as a magnesium transporter
Achr_14030	COG0745	RESPONSE REGULATOR receiver
Achr_14050	COG0800	Aldolase
Achr_14070	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
Achr_14100	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
Achr_14170	COG0135	phosphoribosylanthranilate isomerase activity
Achr_14180	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
Achr_14190	COG0285	dihydrofolate synthase activity
Achr_14220	COG1286	toxin biosynthetic process
Achr_14330	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
Achr_14340	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
Achr_14350	COG0705	Rhomboid family
Achr_14410	COG0745	RESPONSE REGULATOR receiver
Achr_14420	COG0642	Histidine kinase
Achr_14440	COG2900	Belongs to the SlyX family
Achr_14460	COG3139	Protein of unknown function (DUF1315)
Achr_14480	COG0308	aminopeptidase N
Achr_14490	COG0427	acetyl-CoA hydrolase
Achr_14560	COG0714	Associated with various cellular activities
Achr_14640	COG0675	Transposase, IS605 OrfB family
Achr_14660	COG0167	dihydroorotate dehydrogenase activity
Achr_14670	COG3130	regulation of translation
Achr_14690	COG0116	Belongs to the methyltransferase superfamily
Achr_14690	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
Achr_14700	COG2027	D-alanyl-D-alanine carboxypeptidase
Achr_14770	COG1525	nuclease
Achr_14830	COG1857	crispr-associated protein
Achr_14860	COG1203	CRISPR-associated helicase, Cas3
Achr_14890	COG1857	crispr-associated protein
Achr_14920	COG1518	maintenance of DNA repeat elements
Achr_14930	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
Achr_14990	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
Achr_150	COG0252	asparaginase activity
Achr_15010	COG0513	Belongs to the DEAD box helicase family
Achr_15020	COG4301	Catalyzes the SAM-dependent triple methylation of the alpha-amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine
Achr_15030	COG1262	PFAM Formylglycine-generating sulfatase enzyme
Achr_15040	COG5265	(ABC) transporter
Achr_15050	COG0583	DNA-binding transcription factor activity
Achr_15080	COG0326	Molecular chaperone. Has ATPase activity
Achr_15170	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
Achr_15190	COG4659	FMN binding
Achr_15200	COG4658	electron transport chain
Achr_15220	COG2878	Part of a membrane complex involved in electron transport
Achr_15230	COG4657	Part of a membrane complex involved in electron transport
Achr_15240	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
Achr_15240	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
Achr_15250	COG0489	protein tyrosine kinase activity
Achr_15320	COG0717	Belongs to the dCTP deaminase family
Achr_15360	COG1566	PFAM secretion protein HlyD family protein
Achr_15450	COG3012	SEC-C Motif Domain Protein
Achr_15490	COG1199	ATP-dependent helicase activity
Achr_15500	COG1320	monovalent cation:proton antiporter activity
Achr_15550	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
Achr_15550	COG2111	Na H antiporter
Achr_15580	COG2885	chlorophyll binding
Achr_15590	COG0259	pyridoxamine-phosphate oxidase activity
Achr_15620	COG3416	Protein conserved in bacteria
Achr_15630	COG2824	Alkylphosphonate utilization operon protein PhnA
Achr_15700	COG0217	transcriptional regulatory protein
Achr_15710	COG2274	protein secretion by the type I secretion system
Achr_15780	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
Achr_15800	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
Achr_15810	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
Achr_15850	COG0826	peptidase U32
Achr_15930	COG2226	methyltransferase
Achr_15940	COG1943	Transposase
Achr_15970	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
Achr_15980	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
Achr_15980	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
Achr_16020	COG3091	SprT-like family
Achr_16050	COG0037	tRNA processing
Achr_16080	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
Achr_1610	COG0523	cobalamin synthesis protein
Achr_16110	COG0791	NLP P60 protein
Achr_16120	COG0791	NLP P60 protein
Achr_16130	COG0519	Catalyzes the synthesis of GMP from XMP
Achr_16140	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
Achr_16160	COG4206	TonB-dependent receptor
Achr_16190	COG1797	cobyrinic acid a,c-diamide synthase activity
Achr_16200	COG0778	Nitroreductase
Achr_16210	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
Achr_16230	COG1492	cobalamin metabolic process
Achr_16250	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
Achr_16260	COG0406	alpha-ribazole phosphatase activity
Achr_16270	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
Achr_16340	COG1621	beta-fructofuranosidase activity
Achr_16360	COG3100	YcgL domain-containing protein
Achr_16380	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
Achr_1640	COG1607	acyl-coa hydrolase
Achr_16410	COG2983	Belongs to the UPF0260 family
Achr_16430	COG2703	oxygen carrier activity
Achr_16440	COG1295	ribonuclease BN
Achr_16470	COG0121	glutamine amidotransferase
Achr_16490	COG0542	response to heat
Achr_16500	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
Achr_16530	COG2832	Protein of unknown function (DUF454)
Achr_16550	COG0514	ATP-dependent DNA helicase (RecQ)
Achr_1660	COG1283	sodium-dependent phosphate transmembrane transporter activity
Achr_16620	COG2853	Lipoprotein
Achr_16630	COG0745	RESPONSE REGULATOR receiver
Achr_16650	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
Achr_16660	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
Achr_16750	COG4737	Cytotoxic translational repressor of toxin-antitoxin stability system
Achr_1680	COG1764	response to oxidative stress
Achr_16860	COG3781	membrane
Achr_16880	COG4208	sulfate ABC transporter
Achr_16900	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
Achr_16940	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
Achr_16990	COG2011	ABC-type metal ion transport system permease component
Achr_17000	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
Achr_17080	COG1335	isochorismatase
Achr_17090	COG0583	DNA-binding transcription factor activity
Achr_17100	COG2814	Major facilitator Superfamily
Achr_17110	COG0640	Transcriptional regulator
Achr_17120	COG1902	pentaerythritol trinitrate reductase activity
Achr_17130	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
Achr_17150	COG0235	Class ii aldolase
Achr_17180	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
Achr_1720	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
Achr_17200	COG1929	Belongs to the glycerate kinase type-1 family
Achr_17210	COG1116	anion transmembrane transporter activity
Achr_17240	COG1960	acyl-CoA dehydrogenase activity
Achr_1730	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
Achr_17300	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
Achr_17320	COG2175	clavaminate synthase activity
Achr_17340	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
Achr_17350	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
Achr_17360	COG4221	oxidoreductase activity
Achr_17390	COG3133	Outer membrane lipoprotein
Achr_1740	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
Achr_17400	COG2111	Na H antiporter
Achr_17400	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
Achr_17410	COG1006	Multisubunit Na H antiporter MnhC subunit
Achr_17420	COG0651	ATP synthesis coupled electron transport
Achr_17440	COG2212	antiporter activity
Achr_17450	COG1320	monovalent cation:proton antiporter activity
Achr_17550	COG3639	organic phosphonate transmembrane transporter activity
Achr_17570	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
Achr_17590	COG3622	Belongs to the hyi family
Achr_17600	COG2207	Transcriptional regulator
Achr_17610	COG0402	S-adenosylhomocysteine deaminase activity
Achr_17630	COG2030	dehydratase
Achr_17640	COG0318	PFAM AMP-dependent synthetase and ligase
Achr_17670	COG1442	glycosyl transferase family 8
Achr_17670	COG1216	Glycosyl transferase, family 2
Achr_17680	COG1216	Glycosyl transferase, family 2
Achr_17680	COG1442	glycosyl transferase family 8
Achr_17690	COG1216	Glycosyl transferase, family 2
Achr_17690	COG1442	glycosyl transferase family 8
Achr_17770	COG0463	Glycosyl transferase, family 2
Achr_17780	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
Achr_17800	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
Achr_17810	COG0438	transferase activity, transferring glycosyl groups
Achr_17850	COG0438	transferase activity, transferring glycosyl groups
Achr_17860	COG0438	transferase activity, transferring glycosyl groups
Achr_17890	COG0463	Glycosyl transferase, family 2
Achr_17930	COG1132	(ABC) transporter
Achr_17940	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
Achr_17950	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
Achr_17960	COG0489	protein tyrosine kinase activity
Achr_17960	COG3206	protein involved in exopolysaccharide biosynthesis
Achr_17990	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
Achr_18000	COG3123	guanosine phosphorylase activity
Achr_18040	COG2009	succinate dehydrogenase
Achr_18050	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
Achr_18120	COG0045	succinate-CoA ligase (ADP-forming) activity
Achr_18150	COG0697	spore germination
Achr_18160	COG2233	PERMEase
Achr_18180	COG4172	Belongs to the ABC transporter superfamily
Achr_18190	COG4239	(ABC) transporter, permease
Achr_18200	COG4174	ABC transporter (Permease)
Achr_18230	COG0741	lytic transglycosylase activity
Achr_18230	COG1388	LysM domain
Achr_18240	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
Achr_18260	COG0328	RNA-DNA hybrid ribonuclease activity
Achr_18270	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
Achr_18280	COG1982	Orn Lys Arg decarboxylase major
Achr_18330	COG0577	efflux transmembrane transporter activity
Achr_18330	COG1136	(ABC) transporter
Achr_18380	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
Achr_18400	COG0500	methyltransferase
Achr_18430	COG0820	rRNA (adenine-C2-)-methyltransferase activity
Achr_18440	COG0513	Belongs to the DEAD box helicase family
Achr_18610	COG1234	tRNA 3'-trailer cleavage
Achr_18700	COG2165	general secretion pathway protein
Achr_18730	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
Achr_18740	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
Achr_18760	COG4191	Histidine kinase
Achr_18780	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
Achr_18800	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
Achr_18820	COG1621	beta-fructofuranosidase activity
Achr_18850	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
Achr_18880	COG2885	chlorophyll binding
Achr_18890	COG0708	Exodeoxyribonuclease III
Achr_18910	COG0729	surface antigen
Achr_18920	COG2911	Protein conserved in bacteria
Achr_18930	COG1115	amino acid carrier protein
Achr_18980	COG1538	Outer membrane efflux protein
Achr_19020	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
Achr_19020	COG0316	Belongs to the HesB IscA family
Achr_19050	COG1968	undecaprenyl-diphosphatase activity
Achr_19060	COG1278	Cold shock
Achr_19080	COG0488	(ABC) transporter
Achr_19100	COG2135	peptidase activity
Achr_19150	COG1459	type II secretion system
Achr_19170	COG0741	lytic transglycosylase activity
Achr_19180	COG0720	synthase
Achr_19200	COG0745	RESPONSE REGULATOR receiver
Achr_19220	COG1007	ATP synthesis coupled electron transport
Achr_19250	COG0713	ATP synthesis coupled electron transport
Achr_19270	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
Achr_19280	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
Achr_1930	COG4943	cyclic-guanylate-specific phosphodiesterase activity
Achr_19320	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
Achr_19320	COG0649	NAD binding
Achr_19330	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
Achr_19340	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
Achr_19380	COG2153	protein acetylation
Achr_19390	COG2850	peptidyl-arginine hydroxylation
Achr_1940	COG3023	N-Acetylmuramoyl-L-alanine amidase
Achr_19410	COG2915	High frequency lysogenization protein hflD homolog
Achr_19420	COG0482	sulfurtransferase activity
Achr_19450	COG1278	Cold shock
Achr_19460	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
Achr_19470	COG0542	response to heat
Achr_19480	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
Achr_19490	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
Achr_19500	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
Achr_19510	COG0492	ferredoxin-NADP+ reductase activity
Achr_19530	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
Achr_19540	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
Achr_19550	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
Achr_19570	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
Achr_19570	COG1648	precorrin-2 dehydrogenase activity
Achr_19580	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
Achr_19590	COG2920	part of a sulfur-relay system
Achr_19660	COG0366	Alpha amylase catalytic
Achr_19670	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
Achr_19680	COG4580	involved in the transport of maltose and maltodextrins
Achr_19690	COG0166	Belongs to the GPI family
Achr_19720	COG1063	alcohol dehydrogenase
Achr_19790	COG3046	protein related to deoxyribodipyrimidine photolyase
Achr_1980	COG0218	Necessary for normal cell division and for the maintenance of normal septation
Achr_19800	COG2205	protein histidine kinase activity
Achr_19810	COG0745	RESPONSE REGULATOR receiver
Achr_19820	COG3158	transport of potassium into the cell
Achr_19850	COG0583	DNA-binding transcription factor activity
Achr_19860	COG0604	alcohol dehydrogenase
Achr_19880	COG0392	lysyltransferase activity
Achr_19890	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
Achr_1990	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
Achr_19900	COG3568	Endonuclease Exonuclease Phosphatase
Achr_19970	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
Achr_19980	COG0297	glycogen (starch) synthase activity
Achr_200	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
Achr_20000	COG0659	secondary active sulfate transmembrane transporter activity
Achr_20090	COG0322	excinuclease ABC activity
Achr_20140	COG0582	viral genome integration into host DNA
Achr_2020	COG0583	DNA-binding transcription factor activity
Achr_20210	COG2026	Addiction module toxin, RelE StbE family
Achr_20230	COG2356	endonuclease I
Achr_20240	COG2932	Transcriptional regulator
Achr_20280	COG3756	Protein conserved in bacteria
Achr_2030	COG0439	Biotin carboxylase
Achr_2040	COG5016	pyruvate
Achr_2040	COG0511	ligase activity, forming carbon-carbon bonds
Achr_20450	COG4386	tail sheath protein
Achr_2050	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
Achr_20520	COG3299	homolog of phage Mu protein gp47
Achr_20580	COG1960	acyl-CoA dehydrogenase activity
Achr_20590	COG1250	3-hydroxyacyl-CoA dehydrogenase
Achr_2060	COG3360	Dodecin
Achr_20600	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
Achr_20620	COG0318	PFAM AMP-dependent synthetase and ligase
Achr_20630	COG4191	Histidine kinase
Achr_2070	COG1132	(ABC) transporter
Achr_20740	COG2226	methyltransferase
Achr_20790	COG1309	transcriptional regulator
Achr_20810	COG4566	intracellular signal transduction
Achr_20820	COG1309	transcriptional regulator
Achr_20830	COG1752	Esterase of the alpha-beta hydrolase superfamily
Achr_20880	COG0069	glutamate synthase activity
Achr_2090	COG0133	tryptophan synthase activity
Achr_20900	COG1960	acyl-CoA dehydrogenase activity
Achr_20910	COG0183	Belongs to the thiolase family
Achr_20920	COG1250	3-hydroxyacyl-CoA dehydrogenase
Achr_20930	COG1250	3-hydroxyacyl-CoA dehydrogenase
Achr_20960	COG1960	acyl-CoA dehydrogenase activity
Achr_20970	COG1960	acyl-CoA dehydrogenase activity
Achr_20980	COG1024	Enoyl-CoA hydratase
Achr_2100	COG0159	tryptophan synthase activity
Achr_21020	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
Achr_21070	COG0071	Belongs to the small heat shock protein (HSP20) family
Achr_21080	COG0459	protein refolding
Achr_21090	COG0589	response to stress
Achr_21100	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
Achr_21130	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
Achr_21140	COG1529	Aldehyde oxidase and xanthine dehydrogenase
Achr_21140	COG2010	Cytochrome c
Achr_21160	COG0583	DNA-binding transcription factor activity
Achr_21200	COG2304	oxidoreductase activity
Achr_21230	COG2217	Heavy metal translocating P-type atpase
Achr_21260	COG0431	NADPH-dependent FMN reductase
Achr_21270	COG0640	Transcriptional regulator
Achr_21280	COG0798	PFAM Bile acid sodium symporter
Achr_21310	COG0701	Predicted permease
Achr_21330	COG0183	Belongs to the thiolase family
Achr_21350	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
Achr_21350	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
Achr_21360	COG1760	l-serine dehydratase
Achr_21370	COG0404	The glycine cleavage system catalyzes the degradation of glycine
Achr_21410	COG0410	ABC transporter
Achr_21440	COG0559	Belongs to the binding-protein-dependent transport system permease family
Achr_21480	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
Achr_21510	COG2826	transposase and inactivated derivatives, IS30 family
Achr_21560	COG3706	GGDEF domain
Achr_21580	COG5642	Protein of unknown function (DUF2384)
Achr_2160	COG0484	heat shock protein binding
Achr_21600	COG2986	histidine ammonia-lyase
Achr_21610	COG0402	S-adenosylhomocysteine deaminase activity
Achr_21700	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
Achr_21700	COG0574	Belongs to the PEP-utilizing enzyme family
Achr_21720	COG1611	Belongs to the LOG family
Achr_2180	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
Achr_2180	COG0116	Belongs to the methyltransferase superfamily
Achr_21800	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
Achr_21820	COG1609	Transcriptional regulator
Achr_21840	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
Achr_21900	COG0246	Mannitol dehydrogenase
Achr_220	COG3712	iron ion homeostasis
Achr_22060	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
Achr_22150	COG1216	Glycosyl transferase, family 2
Achr_22150	COG0463	Glycosyl transferase, family 2
Achr_22200	COG3064	Membrane
Achr_22260	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
Achr_22270	COG4580	involved in the transport of maltose and maltodextrins
Achr_22290	COG0148	phosphopyruvate hydratase activity
Achr_22310	COG0469	pyruvate kinase activity
Achr_22320	COG0800	Aldolase
Achr_22340	COG1737	Transcriptional regulator
Achr_22360	COG1609	Transcriptional regulator
Achr_22390	COG3550	peptidyl-serine autophosphorylation
Achr_22410	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
Achr_22420	COG2706	6-phosphogluconolactonase activity
Achr_22460	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
Achr_22480	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
Achr_22500	COG0616	signal peptide processing
Achr_22530	COG2816	NAD+ diphosphatase activity
Achr_2270	COG3237	CsbD-like
Achr_22700	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
Achr_22730	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
Achr_22750	COG4229	Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene)
Achr_22770	COG0235	Class ii aldolase
Achr_22790	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
Achr_22850	COG0302	gtp cyclohydrolase
Achr_22860	COG5394	Polyhydroxyalkanoate synthesis repressor PhaR
Achr_22890	COG1028	Short-chain dehydrogenase reductase Sdr
Achr_22910	COG3243	poly(R)-hydroxyalkanoic acid synthase
Achr_22920	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
Achr_22940	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
Achr_22950	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
Achr_22970	COG0544	peptidyl-prolyl cis-trans isomerase activity
Achr_2300	COG2982	Protein involved in outer membrane biogenesis
Achr_23010	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
Achr_23020	COG0215	cysteine-tRNA ligase activity
Achr_23030	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
Achr_23040	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
Achr_23050	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
Achr_23100	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
Achr_23110	COG2201	protein-glutamate methylesterase activity
Achr_23130	COG0436	Aminotransferase
Achr_23170	COG2223	nitrite transmembrane transporter activity
Achr_23180	COG0515	serine threonine protein kinase
Achr_23180	COG2815	serine threonine protein kinase
Achr_23190	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
Achr_2320	COG0778	Nitroreductase
Achr_23200	COG2146	nitrite reductase [NAD(P)H] activity
Achr_23210	COG0243	molybdopterin cofactor binding
Achr_23250	COG0668	transmembrane transport
Achr_23270	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
Achr_23290	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
Achr_2330	COG0577	efflux transmembrane transporter activity
Achr_2330	COG1136	(ABC) transporter
Achr_23340	COG1802	Transcriptional regulator
Achr_23370	COG0189	ligase activity
Achr_23420	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
Achr_23490	COG4181	ATPase activity
Achr_23500	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
Achr_23530	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
Achr_23540	COG0084	hydrolase, TatD family'
Achr_23560	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
Achr_23570	COG1469	GTP cyclohydrolase I activity
Achr_23610	COG0714	Associated with various cellular activities
Achr_23660	COG3409	Peptidoglycan-binding domain 1 protein
Achr_23660	COG3267	Type II secretory pathway component ExeA
Achr_2380	COG0366	Alpha amylase catalytic
Achr_23800	COG0783	Belongs to the Dps family
Achr_23810	COG0753	catalase activity
Achr_23860	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
Achr_23860	COG1918	ferrous iron import across plasma membrane
Achr_23870	COG2217	Heavy metal translocating P-type atpase
Achr_23920	COG1595	DNA-templated transcription, initiation
Achr_23930	COG3712	iron ion homeostasis
Achr_23940	COG4774	siderophore transport
Achr_23950	COG0625	glutathione transferase activity
Achr_23960	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
Achr_23970	COG3585	molybdate ion transport
Achr_24000	COG3265	gluconokinase activity
Achr_24040	COG0667	Aldo Keto reductase
Achr_24050	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
Achr_24070	COG1529	Aldehyde oxidase and xanthine dehydrogenase
Achr_24090	COG0402	S-adenosylhomocysteine deaminase activity
Achr_2410	COG1943	Transposase
Achr_24100	COG0318	PFAM AMP-dependent synthetase and ligase
Achr_24120	COG4566	intracellular signal transduction
Achr_24130	COG0675	Transposase, IS605 OrfB family
Achr_24200	COG0765	amino acid transport
Achr_24220	COG1126	abc transporter atp-binding protein
Achr_24230	COG4266	Belongs to the allantoicase family
Achr_24240	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
Achr_24280	COG1024	Enoyl-CoA hydratase
Achr_24330	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
Achr_24340	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
Achr_24350	COG1045	serine acetyltransferase
Achr_24380	COG0515	serine threonine protein kinase
Achr_24380	COG2815	serine threonine protein kinase
Achr_2440	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
Achr_24420	COG0675	Transposase, IS605 OrfB family
Achr_24430	COG4647	ligase activity
Achr_24440	COG0146	N-methylhydantoinase B acetone carboxylase alpha subunit
Achr_24450	COG0145	ligase activity
Achr_24470	COG4396	Host-nuclease inhibitor protein Gam
Achr_24480	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
Achr_24570	COG0776	regulation of translation
Achr_24580	COG0072	phenylalanine-tRNA ligase activity
Achr_24590	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
Achr_24600	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
Achr_24610	COG0291	Belongs to the bacterial ribosomal protein bL35 family
Achr_24630	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
Achr_24660	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
Achr_2470	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
Achr_24730	COG1053	succinate dehydrogenase
Achr_24740	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
Achr_24750	COG1414	Transcriptional regulator
Achr_24760	COG0679	Auxin Efflux Carrier
Achr_24770	COG0564	pseudouridine synthase activity
Achr_24790	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
Achr_2480	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
Achr_24800	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
Achr_24840	COG1555	photosystem II stabilization
Achr_24860	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
Achr_24920	COG3278	Belongs to the heme-copper respiratory oxidase family
Achr_24950	COG2010	Cytochrome c
Achr_24960	COG0348	domain, Protein
Achr_25020	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
Achr_25040	COG1294	oxidase, subunit
Achr_25070	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
Achr_25080	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
Achr_25090	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
Achr_25180	COG0673	inositol 2-dehydrogenase activity
Achr_25250	COG3181	Tripartite tricarboxylate transporter family receptor
Achr_25280	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
Achr_25290	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
Achr_25300	COG3115	cell septum assembly
Achr_25320	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
Achr_25330	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
Achr_25390	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
Achr_25440	COG0455	bacterial-type flagellum organization
Achr_25450	COG2032	superoxide dismutase activity
Achr_25500	COG1116	anion transmembrane transporter activity
Achr_25510	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
Achr_25520	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
Achr_25530	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
Achr_25540	COG0431	NADPH-dependent FMN reductase
Achr_25550	COG0450	alkyl hydroperoxide reductase
Achr_25560	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
Achr_25630	COG0477	Major facilitator Superfamily
Achr_25640	COG2204	response regulator
Achr_25650	COG4191	Histidine kinase
Achr_25660	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
Achr_25670	COG1403	HNH endonuclease
Achr_2570	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
Achr_25710	COG1278	Cold shock
Achr_25780	COG3002	Belongs to the UPF0753 family
Achr_25790	COG4067	protein conserved in archaea
Achr_25790	COG0189	ligase activity
Achr_2580	COG0346	lactoylglutathione lyase activity
Achr_25820	COG0642	Histidine kinase
Achr_25840	COG3642	lipopolysaccharide core region biosynthetic process
Achr_25890	COG0738	Major facilitator superfamily
Achr_25900	COG0166	Belongs to the GPI family
Achr_25930	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
Achr_25950	COG3829	transcription factor binding
Achr_25950	COG3290	protein histidine kinase activity
Achr_25960	COG2610	gluconate transmembrane transporter activity
Achr_25970	COG1028	Short-chain dehydrogenase reductase Sdr
Achr_25980	COG2031	fatty acid transporter
Achr_26010	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
Achr_26040	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
Achr_26050	COG0438	transferase activity, transferring glycosyl groups
Achr_26070	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
Achr_26080	COG1943	Transposase
Achr_26100	COG0732	type I restriction modification DNA specificity domain
Achr_26140	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
Achr_26150	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
Achr_26180	COG2133	pyrroloquinoline quinone binding
Achr_26200	COG4221	oxidoreductase activity
Achr_26250	COG1063	alcohol dehydrogenase
Achr_26270	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Achr_26280	COG0842	Transport permease protein
Achr_26280	COG1129	ABC transporter
Achr_26290	COG0842	Transport permease protein
Achr_26330	COG0583	DNA-binding transcription factor activity
Achr_26340	COG1621	beta-fructofuranosidase activity
Achr_26350	COG0427	acetyl-CoA hydrolase
Achr_26360	COG0427	acetyl-CoA hydrolase
Achr_26400	COG1960	acyl-CoA dehydrogenase activity
Achr_26410	COG1024	Enoyl-CoA hydratase
Achr_26410	COG1250	3-hydroxyacyl-CoA dehydrogenase
Achr_26420	COG0183	Belongs to the thiolase family
Achr_26440	COG2814	Major facilitator Superfamily
Achr_26470	COG4115	mRNA cleavage
Achr_26480	COG2161	toxin-antitoxin pair type II binding
Achr_26510	COG1643	Atp-dependent helicase
Achr_26520	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
Achr_26530	COG0438	transferase activity, transferring glycosyl groups
Achr_26580	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
Achr_26600	COG0438	transferase activity, transferring glycosyl groups
Achr_26630	COG0438	transferase activity, transferring glycosyl groups
Achr_26630	COG1216	Glycosyl transferase, family 2
Achr_26680	COG1091	dTDP-4-dehydrorhamnose reductase activity
Achr_2670	COG0149	triose-phosphate isomerase activity
Achr_26740	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
Achr_26760	COG0463	Glycosyl transferase, family 2
Achr_26840	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Achr_26860	COG0438	transferase activity, transferring glycosyl groups
Achr_26890	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
Achr_26910	COG0776	regulation of translation
Achr_26930	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
Achr_26940	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
Achr_26970	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
Achr_26990	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
Achr_270	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
Achr_27000	COG0402	S-adenosylhomocysteine deaminase activity
Achr_27010	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
Achr_27020	COG0546	phosphoglycolate phosphatase activity
Achr_27030	COG1028	Short-chain dehydrogenase reductase Sdr
Achr_27050	COG0800	Aldolase
Achr_2710	COG2132	Multicopper oxidase
Achr_27100	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
Achr_27110	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
Achr_27120	COG0009	L-threonylcarbamoyladenylate synthase
Achr_27130	COG0613	PHP domain protein
Achr_27140	COG2917	probably involved in intracellular septation
Achr_27150	COG2350	Protein conserved in bacteria
Achr_27160	COG0745	RESPONSE REGULATOR receiver
Achr_27180	COG0642	Histidine kinase
Achr_27190	COG0778	Nitroreductase
Achr_2720	COG2132	Multicopper oxidase
Achr_27210	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
Achr_27220	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
Achr_27220	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
Achr_27250	COG0842	Transport permease protein
Achr_27260	COG1131	(ABC) transporter
Achr_27320	COG2255	four-way junction helicase activity
Achr_27330	COG2205	protein histidine kinase activity
Achr_27330	COG3437	response regulator, receiver
Achr_27330	COG3850	Histidine kinase
Achr_27330	COG4999	Histidine kinase
Achr_27340	COG0386	Belongs to the glutathione peroxidase family
Achr_27350	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
Achr_27360	COG0436	Aminotransferase
Achr_2740	COG0861	Integral membrane protein TerC family
Achr_27400	COG0500	methyltransferase
Achr_27460	COG0625	glutathione transferase activity
Achr_27470	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
Achr_2750	COG2851	Citrate transporter
Achr_27500	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
Achr_27520	COG0730	response to heat
Achr_27530	COG0583	DNA-binding transcription factor activity
Achr_27540	COG1846	Transcriptional regulator
Achr_27550	COG1764	response to oxidative stress
Achr_27600	COG3135	benzoate transporter
Achr_27640	COG5002	protein histidine kinase activity
Achr_2770	COG0583	DNA-binding transcription factor activity
Achr_27740	COG2814	Major facilitator Superfamily
Achr_27750	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
Achr_27760	COG4569	acetaldehyde dehydrogenase (acetylating) activity
Achr_27770	COG3971	2-oxopent-4-enoate hydratase activity
Achr_27780	COG1414	Transcriptional regulator
Achr_27790	COG2267	carboxylic ester hydrolase activity
Achr_2780	COG1053	succinate dehydrogenase
Achr_27800	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
Achr_27820	COG1355	regulation of microtubule-based process
Achr_27860	COG0084	hydrolase, TatD family'
Achr_27890	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
Achr_27900	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
Achr_27920	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
Achr_27930	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
Achr_27960	COG0416	fatty acid biosynthetic process
Achr_27970	COG0333	Belongs to the bacterial ribosomal protein bL32 family
Achr_27980	COG1399	metal-binding, possibly nucleic acid-binding protein
Achr_27990	COG0424	maF-like protein
Achr_2800	COG0583	DNA-binding transcription factor activity
Achr_28000	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
Achr_28000	COG0616	signal peptide processing
Achr_28010	COG0546	phosphoglycolate phosphatase activity
Achr_28030	COG1530	ribonuclease E activity
Achr_28040	COG0812	UDP-N-acetylmuramate dehydrogenase activity
Achr_28050	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
Achr_28060	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
Achr_28070	COG2835	tetraacyldisaccharide 4'-kinase activity
Achr_28080	COG1663	tetraacyldisaccharide 4'-kinase activity
Achr_28090	COG0848	biopolymer transport protein
Achr_2810	COG2828	Protein conserved in bacteria
Achr_28100	COG0811	peptide transport
Achr_28110	COG2333	competence protein COMEC
Achr_28110	COG0658	competence protein
Achr_28130	COG4591	ABC-type transport system involved in lipoprotein release permease component
Achr_28140	COG1136	(ABC) transporter
Achr_28150	COG4591	ABC-type transport system involved in lipoprotein release permease component
Achr_28160	COG0584	glycerophosphoryl diester phosphodiesterase
Achr_28170	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
Achr_28190	COG1477	protein flavinylation
Achr_2820	COG2851	Citrate transporter
Achr_28240	COG1805	sodium ion transport
Achr_28270	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
Achr_28290	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
Achr_2830	COG0861	Integral membrane protein TerC family
Achr_28330	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
Achr_28390	COG0183	Belongs to the thiolase family
Achr_28400	COG1024	Enoyl-CoA hydratase
Achr_28400	COG1250	3-hydroxyacyl-CoA dehydrogenase
Achr_28470	COG1960	acyl-CoA dehydrogenase activity
Achr_28480	COG0183	Belongs to the thiolase family
Achr_28500	COG1012	belongs to the aldehyde dehydrogenase family
Achr_28510	COG1024	Enoyl-CoA hydratase
Achr_28530	COG2814	Major facilitator Superfamily
Achr_28540	COG0589	response to stress
Achr_28590	COG0303	'Molybdopterin
Achr_28600	COG0521	Mo-molybdopterin cofactor biosynthetic process
Achr_28630	COG2433	Pfam Transposase IS66
Achr_28640	COG3436	PFAM IS66 Orf2 family protein
Achr_28710	COG0137	argininosuccinate synthase activity
Achr_28720	COG0418	dihydroorotase activity
Achr_28730	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
Achr_28740	COG2906	2 iron, 2 sulfur cluster binding
Achr_28760	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
Achr_28780	COG3842	ATPase activity
Achr_2880	COG1960	acyl-CoA dehydrogenase activity
Achr_28810	COG2267	carboxylic ester hydrolase activity
Achr_28830	COG0583	DNA-binding transcription factor activity
Achr_28850	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
Achr_28850	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
Achr_28850	COG0506	proline dehydrogenase activity
Achr_28870	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
Achr_28890	COG2226	methyltransferase
Achr_2890	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
Achr_28900	COG0500	methyltransferase
Achr_28920	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
Achr_28940	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
Achr_28950	COG0571	ribonuclease III activity
Achr_28970	COG0481	GTPase activity
Achr_28980	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
Achr_28990	COG3086	response to oxidative stress
Achr_290	COG2189	Belongs to the N(4) N(6)-methyltransferase family
Achr_2900	COG1024	Enoyl-CoA hydratase
Achr_29120	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
Achr_29130	COG1024	Enoyl-CoA hydratase
Achr_29180	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
Achr_29200	COG3030	protein affecting phage T7 exclusion by the F plasmid
Achr_29220	COG1028	Short-chain dehydrogenase reductase Sdr
Achr_29250	COG1666	GTP binding
Achr_29270	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
Achr_29270	COG4191	Histidine kinase
Achr_29280	COG2096	Adenosyltransferase
Achr_29290	COG0494	nUDIX hydrolase
Achr_29310	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
Achr_29320	COG0653	protein targeting
Achr_29340	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
Achr_29380	COG1181	Belongs to the D-alanine--D-alanine ligase family
Achr_29390	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
Achr_2940	COG3180	Ammonia monooxygenase
Achr_29400	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
Achr_29410	COG0772	Belongs to the SEDS family
Achr_29420	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
Achr_29430	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
Achr_29440	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
Achr_29450	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
Achr_29480	COG0275	rRNA processing
Achr_29490	COG2001	Belongs to the MraZ family
Achr_29520	COG3107	peptidoglycan biosynthetic process
Achr_29530	COG0792	nuclease activity
Achr_29540	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
Achr_29550	COG2823	Periplasmic or secreted lipoprotein
Achr_29570	COG2969	positive regulation of protein catabolic process
Achr_29580	COG0625	glutathione transferase activity
Achr_29590	COG2857	Cytochrome c1
Achr_29600	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
Achr_29610	COG0723	plastoquinol--plastocyanin reductase activity
Achr_29630	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Achr_29640	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
Achr_29650	COG1515	deoxyribonuclease V activity
Achr_29660	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
Achr_29710	COG0175	sulfate reduction
Achr_29730	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
Achr_29740	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
Achr_29760	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
Achr_29770	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
Achr_29810	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
Achr_29820	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
Achr_29830	COG1127	ABC transporter
Achr_29850	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
Achr_29870	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
Achr_29880	COG1137	ATPase activity
Achr_29920	COG1660	Displays ATPase and GTPase activities
Achr_29940	COG0312	modulator of DNA gyrase
Achr_29950	COG3028	Belongs to the UPF0307 family
Achr_29960	COG0312	modulator of DNA gyrase
Achr_29970	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
Achr_29990	COG1530	ribonuclease E activity
Achr_30	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
Achr_30000	COG0424	maF-like protein
Achr_30010	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
Achr_30020	COG1792	Involved in formation and maintenance of cell shape
Achr_30030	COG1077	Cell shape determining protein MreB Mrl
Achr_30040	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
Achr_30050	COG0154	amidase activity
Achr_30060	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
Achr_30070	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
Achr_30100	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
Achr_30130	COG0747	negative chemotaxis
Achr_30140	COG0601	transmembrane transport
Achr_30150	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
Achr_30160	COG0444	Belongs to the ABC transporter superfamily
Achr_30170	COG4608	Belongs to the ABC transporter superfamily
Achr_30180	COG1984	allophanate hydrolase subunit 2
Achr_30190	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
Achr_3020	COG0528	UMP kinase activity
Achr_30220	COG4774	siderophore transport
Achr_30230	COG3128	pkhd-type hydroxylase
Achr_30260	COG0019	diaminopimelate decarboxylase activity
Achr_30270	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
Achr_30290	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
Achr_30290	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
Achr_30290	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
Achr_3030	COG0528	UMP kinase activity
Achr_30300	COG1105	Belongs to the carbohydrate kinase PfkB family
Achr_30310	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
Achr_30310	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
Achr_30320	COG1609	Transcriptional regulator
Achr_30350	COG0084	hydrolase, TatD family'
Achr_30370	COG3023	N-Acetylmuramoyl-L-alanine amidase
Achr_30420	COG4456	Virulence-associated protein
Achr_30450	COG1943	Transposase
Achr_30490	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
Achr_30500	COG0237	dephospho-CoA kinase activity
Achr_30570	COG1252	NADH dehydrogenase
Achr_30680	COG1278	Cold shock
Achr_3070	COG1136	(ABC) transporter
Achr_30700	COG0795	lipopolysaccharide-transporting ATPase activity
Achr_30710	COG0795	lipopolysaccharide-transporting ATPase activity
Achr_30720	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
Achr_30770	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
Achr_30780	COG1253	flavin adenine dinucleotide binding
Achr_30800	COG0419	ATPase involved in DNA repair
Achr_30820	COG0420	3'-5' exonuclease activity
Achr_30830	COG1028	Short-chain dehydrogenase reductase Sdr
Achr_30850	COG0583	DNA-binding transcription factor activity
Achr_30860	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
Achr_30870	COG3081	Nucleoid-associated protein
Achr_30890	COG2827	Endonuclease containing a URI domain
Achr_30950	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
Achr_30960	COG0315	cyclic pyranopterin monophosphate synthase activity
Achr_30970	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
Achr_30990	COG3022	response to hydroperoxide
Achr_31020	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
Achr_31070	COG2204	response regulator
Achr_31090	COG3685	Protein conserved in bacteria
Achr_31100	COG1028	Short-chain dehydrogenase reductase Sdr
Achr_31120	COG2323	membrane
Achr_31130	COG1271	oxidase subunit
Achr_31140	COG1294	oxidase, subunit
Achr_3120	COG1012	belongs to the aldehyde dehydrogenase family
Achr_3130	COG0596	Alpha beta hydrolase
Achr_31310	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
Achr_3140	COG0322	excinuclease ABC activity
Achr_31430	COG3719	Belongs to the RNase T2 family
Achr_31440	COG0583	DNA-binding transcription factor activity
Achr_31450	COG1253	flavin adenine dinucleotide binding
Achr_31480	COG1024	Enoyl-CoA hydratase
Achr_31500	COG1024	Enoyl-CoA hydratase
Achr_31510	COG1960	acyl-CoA dehydrogenase activity
Achr_31520	COG0583	DNA-binding transcription factor activity
Achr_31550	COG0848	biopolymer transport protein
Achr_31570	COG2205	protein histidine kinase activity
Achr_31580	COG0745	RESPONSE REGULATOR receiver
Achr_31660	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
Achr_31660	COG4651	solute:proton antiporter activity
Achr_3170	COG0667	Aldo Keto reductase
Achr_31700	COG4774	siderophore transport
Achr_31770	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
Achr_31810	COG3052	prosthetic group binding
Achr_31820	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
Achr_31850	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
Achr_31880	COG1858	cytochrome C peroxidase
Achr_31920	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
Achr_31950	COG0628	permease
Achr_31970	COG2267	carboxylic ester hydrolase activity
Achr_320	COG2189	Belongs to the N(4) N(6)-methyltransferase family
Achr_32060	COG2814	Major facilitator Superfamily
Achr_32070	COG1309	transcriptional regulator
Achr_3210	COG3909	cytochrome
Achr_32110	COG0123	including yeast histone deacetylase and acetoin utilization protein
Achr_32130	COG0513	Belongs to the DEAD box helicase family
Achr_32150	COG1643	Atp-dependent helicase
Achr_32170	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
Achr_32190	COG1522	sequence-specific DNA binding
Achr_32220	COG4302	ethanolamine ammonia-lyase activity
Achr_32230	COG4303	Ethanolamine ammonia lyase large subunit
Achr_32240	COG0829	nickel cation binding
Achr_32250	COG0831	urea catabolic process
Achr_32260	COG0832	Belongs to the urease beta subunit family
Achr_32270	COG0804	urea catabolic process
Achr_32330	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
Achr_32340	COG0830	nickel cation binding
Achr_32350	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
Achr_32360	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
Achr_32380	COG4772	TonB-dependent receptor
Achr_32400	COG4264	IucA IucC family
Achr_32410	COG2814	Major facilitator Superfamily
Achr_32430	COG0019	diaminopimelate decarboxylase activity
Achr_32440	COG1960	acyl-CoA dehydrogenase activity
Achr_32460	COG0351	phosphomethylpyrimidine kinase
Achr_32470	COG0352	thiamine-phosphate diphosphorylase activity
Achr_32480	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
Achr_32530	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Achr_32560	COG1702	phosphate starvation-inducible protein PhoH
Achr_32570	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
Achr_32580	COG4535	Mg2 and Co2 transporter CorC
Achr_32590	COG0815	Transfers the fatty acyl group on membrane lipoproteins
Achr_3260	COG3706	GGDEF domain
Achr_3260	COG0745	RESPONSE REGULATOR receiver
Achr_32600	COG1434	Gram-negative-bacterium-type cell wall biogenesis
Achr_32620	COG0495	leucyl-tRNA aminoacylation
Achr_32700	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
Achr_32740	COG4569	acetaldehyde dehydrogenase (acetylating) activity
Achr_3280	COG0640	Transcriptional regulator
Achr_32800	COG2814	Major facilitator Superfamily
Achr_32880	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Achr_32910	COG2951	lytic endotransglycosylase activity
Achr_32930	COG3385	transposase activity
Achr_32950	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
Achr_32960	COG0321	lipoyl(octanoyl) transferase activity
Achr_32970	COG2921	Belongs to the UPF0250 family
Achr_32980	COG1686	Belongs to the peptidase S11 family
Achr_33000	COG2951	lytic endotransglycosylase activity
Achr_33010	COG0772	Belongs to the SEDS family
Achr_33020	COG0768	penicillin binding
Achr_33030	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
Achr_33050	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
Achr_33060	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
Achr_33070	COG0586	Pfam SNARE associated Golgi protein
Achr_3310	COG0174	glutamine synthetase
Achr_33100	COG1346	cytolysis
Achr_33120	COG0702	epimerase
Achr_3320	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
Achr_33200	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
Achr_33210	COG0675	Transposase, IS605 OrfB family
Achr_33220	COG3284	Transcriptional regulator
Achr_33230	COG1012	belongs to the aldehyde dehydrogenase family
Achr_33240	COG1454	alcohol dehydrogenase
Achr_33260	COG3228	Belongs to the MtfA family
Achr_3330	COG0174	glutamine synthetase
Achr_33310	COG5001	Diguanylate cyclase
Achr_33310	COG3300	MHYT domain
Achr_33320	COG1722	exodeoxyribonuclease VII activity
Achr_33330	COG0142	geranyltranstransferase activity
Achr_33340	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
Achr_33370	COG2252	PERMEase
Achr_33380	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
Achr_33410	COG2321	neutral zinc metallopeptidase
Achr_33430	COG1946	Acyl-CoA thioesterase
Achr_33450	COG2813	Specifically methylates the guanine in position
Achr_33510	COG0305	Participates in initiation and elongation during chromosome replication
Achr_33520	COG0359	binds to the 23S rRNA
Achr_33540	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
Achr_33550	COG0360	Binds together with S18 to 16S ribosomal RNA
Achr_33570	COG0557	exoribonuclease II activity
Achr_3360	COG4737	Cytotoxic translational repressor of toxin-antitoxin stability system
Achr_33600	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
Achr_33610	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
Achr_33630	COG0330	HflC and HflK could
Achr_33640	COG0330	HflC and HflK could
Achr_33650	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
Achr_33660	COG1923	regulation of RNA biosynthetic process
Achr_33670	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
Achr_33680	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
Achr_33690	COG0860	N-Acetylmuramoyl-L-alanine amidase
Achr_33700	COG0802	atpase or kinase
Achr_33710	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
Achr_33710	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
Achr_33730	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
Achr_33740	COG1162	GTPase activity
Achr_33760	COG0688	phosphatidylethanolamine metabolic process
Achr_33770	COG5002	protein histidine kinase activity
Achr_33770	COG5001	Diguanylate cyclase
Achr_33780	COG1063	alcohol dehydrogenase
Achr_33810	COG3766	membrane
Achr_33830	COG0754	glutathionylspermidine amidase activity
Achr_33880	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
Achr_33890	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
Achr_3390	COG3842	ATPase activity
Achr_33910	COG0765	amino acid transport
Achr_33920	COG0765	amino acid transport
Achr_33930	COG1126	abc transporter atp-binding protein
Achr_33960	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
Achr_3400	COG1176	ABC-type spermidine putrescine transport system, permease component I
Achr_34030	COG2162	N-hydroxyarylamine O-acetyltransferase activity
Achr_34050	COG4178	(ABC) transporter
Achr_34070	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
Achr_34080	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
Achr_3410	COG1177	transmembrane transport
Achr_34170	COG0659	secondary active sulfate transmembrane transporter activity
Achr_34180	COG0589	response to stress
Achr_3420	COG0625	glutathione transferase activity
Achr_34200	COG0534	Mate efflux family protein
Achr_34210	COG1166	arginine decarboxylase activity
Achr_34220	COG0023	Translation Initiation Factor
Achr_34250	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
Achr_34320	COG2264	protein methyltransferase activity
Achr_34360	COG0138	bifunctional purine biosynthesis protein purh
Achr_34390	COG0443	Heat shock 70 kDa protein
Achr_34410	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
Achr_34430	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
Achr_34450	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
Achr_34460	COG3577	Aspartyl protease
Achr_34480	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
Achr_3450	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
Achr_34510	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
Achr_34550	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
Achr_34550	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
Achr_34560	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
Achr_34580	COG2264	protein methyltransferase activity
Achr_34590	COG3118	belongs to the thioredoxin family
Achr_34620	COG4181	ATPase activity
Achr_34670	COG0848	biopolymer transport protein
Achr_34680	COG0811	peptide transport
Achr_34690	COG0811	peptide transport
Achr_34710	COG3047	cAMP biosynthetic process
Achr_34720	COG3047	cAMP biosynthetic process
Achr_34730	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
Achr_34750	COG1028	Short-chain dehydrogenase reductase Sdr
Achr_34760	COG0583	DNA-binding transcription factor activity
Achr_34780	COG2814	Major facilitator Superfamily
Achr_34800	COG0203	ribosomal protein L17
Achr_34810	COG0202	RNA polymerase activity
Achr_34820	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
Achr_34830	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
Achr_34840	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
Achr_34860	COG0257	Belongs to the bacterial ribosomal protein bL36 family
Achr_34880	COG0200	Binds to the 23S rRNA
Achr_3490	COG0676	glucose-6-phosphate 1-epimerase activity
Achr_34900	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
Achr_34920	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
Achr_34940	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
Achr_34960	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
Achr_34970	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
Achr_34980	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
Achr_34990	COG0255	Belongs to the universal ribosomal protein uL29 family
Achr_3500	COG1607	acyl-coa hydrolase
Achr_35000	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
Achr_35010	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
Achr_35030	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
Achr_35040	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
Achr_35050	COG0089	rRNA binding
Achr_35060	COG0088	Forms part of the polypeptide exit tunnel
Achr_35070	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
Achr_35080	COG0051	transcription antitermination factor activity, RNA binding
Achr_35110	COG0049	tRNA binding
Achr_35120	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
Achr_35140	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
Achr_35150	COG0085	RNA polymerase activity
Achr_35170	COG0222	ribosome binding
Achr_35190	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
Achr_35200	COG0081	regulation of translation
Achr_35210	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
Achr_3530	COG0573	inorganic phosphate transmembrane transporter activity
Achr_35300	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
Achr_35310	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
Achr_35310	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
Achr_35320	COG1289	transmembrane transporter activity
Achr_35350	COG2354	Protein conserved in bacteria
Achr_35370	COG1451	nucleotide metabolic process
Achr_35380	COG1349	DNA-binding transcription factor activity
Achr_35390	COG0673	inositol 2-dehydrogenase activity
Achr_35400	COG4702	Belongs to the UPF0303 family
Achr_35430	COG0126	phosphoglycerate kinase activity
Achr_35450	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
Achr_35460	COG2226	methyltransferase
Achr_35470	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
Achr_35500	COG0494	nUDIX hydrolase
Achr_35510	COG1011	Hydrolase
Achr_35570	COG1028	Short-chain dehydrogenase reductase Sdr
Achr_35590	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
Achr_3560	COG0739	heme binding
Achr_35620	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
Achr_3570	COG1253	flavin adenine dinucleotide binding
Achr_35710	COG0463	Glycosyl transferase, family 2
Achr_35720	COG1215	transferase activity, transferring glycosyl groups
Achr_35730	COG0726	polysaccharide deacetylase
Achr_35800	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
Achr_35810	COG0189	ligase activity
Achr_35810	COG4067	protein conserved in archaea
Achr_35820	COG0189	ligase activity
Achr_35840	COG0745	RESPONSE REGULATOR receiver
Achr_35880	COG0457	Tetratricopeptide repeat
Achr_35900	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
Achr_35910	COG2183	response to ionizing radiation
Achr_35930	COG2918	glutathione biosynthetic process
Achr_35950	COG0366	Alpha amylase catalytic
Achr_35950	COG5263	repeat protein
Achr_3600	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
Achr_36020	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
Achr_36030	COG1459	type II secretion system
Achr_36070	COG4795	General secretion pathway protein
Achr_36080	COG3156	type II secretion system protein K
Achr_36170	COG3447	MASE1 domain protein
Achr_36170	COG5002	protein histidine kinase activity
Achr_36170	COG5001	Diguanylate cyclase
Achr_36190	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
Achr_36190	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
Achr_36210	COG0306	phosphate transporter
Achr_36220	COG1392	Phosphate transport regulator
Achr_36230	COG3025	triphosphatase activity
Achr_36250	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
Achr_36290	COG3132	Protein of unknown function, DUF480
Achr_36300	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
Achr_36310	COG1127	ABC transporter
Achr_36320	COG3218	ABC-type transport auxiliary lipoprotein component
Achr_36320	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
Achr_36360	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
Achr_36370	COG0583	DNA-binding transcription factor activity
Achr_36390	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
Achr_36400	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
Achr_36430	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
Achr_36440	COG4942	peptidase
Achr_36450	COG0793	Belongs to the peptidase S41A family
Achr_36460	COG0107	imidazoleglycerol-phosphate synthase activity
Achr_36470	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
Achr_36480	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
Achr_36490	COG0131	Imidazoleglycerol-phosphate dehydratase
Achr_3650	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
Achr_36530	COG1194	a g-specific adenine glycosylase
Achr_36540	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
Achr_3660	COG0583	DNA-binding transcription factor activity
Achr_36600	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
Achr_36600	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
Achr_36630	COG1178	ABC-type Fe3 transport system permease component
Achr_36650	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
Achr_36660	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
Achr_36670	COG0006	proline dipeptidase activity
Achr_36680	COG3079	Belongs to the UPF0149 family
Achr_3670	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
Achr_36710	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
Achr_36750	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
Achr_36790	COG0248	Ppx GppA phosphatase
Achr_36800	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
Achr_36820	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
Achr_36830	COG1671	Belongs to the UPF0178 family
Achr_36840	COG0672	)-iron permease
Achr_36850	COG1280	lysine exporter protein (LysE YggA)
Achr_36860	COG0861	Integral membrane protein TerC family
Achr_36880	COG0488	(ABC) transporter
Achr_36970	COG0165	Argininosuccinate lyase
Achr_36980	COG0598	Magnesium transport protein CorA
Achr_370	COG0659	secondary active sulfate transmembrane transporter activity
Achr_37010	COG1965	Belongs to the frataxin family
Achr_37040	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
Achr_37060	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
Achr_37070	COG0546	phosphoglycolate phosphatase activity
Achr_37100	COG0432	Pfam Uncharacterised protein family UPF0047
Achr_37110	COG0004	ammonium transporteR
Achr_37120	COG0347	Belongs to the P(II) protein family
Achr_37140	COG0606	chelatase, subunit chli
Achr_37170	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
Achr_37180	COG0606	chelatase, subunit chli
Achr_37210	COG0583	DNA-binding transcription factor activity
Achr_37230	COG1741	Belongs to the pirin family
Achr_37270	COG0753	catalase activity
Achr_37290	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
Achr_3730	COG1683	Conserved Protein
Achr_37330	COG0251	oxidation-reduction process
Achr_37340	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
Achr_37360	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
Achr_37370	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
Achr_37390	COG1012	belongs to the aldehyde dehydrogenase family
Achr_3740	COG3180	Ammonia monooxygenase
Achr_37400	COG0267	Belongs to the bacterial ribosomal protein bL33 family
Achr_37410	COG0227	Belongs to the bacterial ribosomal protein bL28 family
Achr_37420	COG0235	Class ii aldolase
Achr_37430	COG0747	negative chemotaxis
Achr_37450	COG2177	Part of the ABC transporter FtsEX involved in
Achr_37460	COG2884	Cell division ATP-binding protein ftsE
Achr_37470	COG0552	protein localization to endoplasmic reticulum
Achr_37480	COG0612	Peptidase, M16
Achr_37490	COG0612	Peptidase, M16
Achr_37500	COG0742	ribosomal rna small subunit methyltransferase
Achr_37510	COG0429	hydrolase of the alpha beta-hydrolase fold
Achr_37520	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
Achr_3760	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
Achr_37740	COG1396	sequence-specific DNA binding
Achr_37750	COG3550	peptidyl-serine autophosphorylation
Achr_3780	COG0277	FAD linked oxidase domain protein
Achr_37820	COG0583	DNA-binding transcription factor activity
Achr_3790	COG0179	Fumarylacetoacetate (FAA) hydrolase
Achr_37940	COG2864	formate dehydrogenase
Achr_37950	COG0437	4 iron, 4 sulfur cluster binding
Achr_37960	COG0243	molybdopterin cofactor binding
Achr_37960	COG3383	formate dehydrogenase (NAD+) activity
Achr_37970	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
Achr_3800	COG3204	pilus organization
Achr_38060	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
Achr_38080	COG0738	Major facilitator superfamily
Achr_3810	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
Achr_38100	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
Achr_38110	COG2721	sulfolactate sulfo-lyase activity
Achr_38120	COG2271	Major facilitator Superfamily
Achr_38130	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
Achr_38140	COG2186	Transcriptional regulator
Achr_38150	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
Achr_38180	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
Achr_38190	COG0513	Belongs to the DEAD box helicase family
Achr_3820	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
Achr_38210	COG2353	YceI-like domain
Achr_38220	COG3038	cytochrome b561
Achr_38250	COG1385	rRNA (uridine-N3-)-methyltransferase activity
Achr_38290	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
Achr_38370	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
Achr_38390	COG0540	Belongs to the ATCase OTCase family
Achr_38480	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
Achr_38490	COG2813	Specifically methylates the guanine in position
Achr_38490	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
Achr_3850	COG0494	nUDIX hydrolase
Achr_38510	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
Achr_38520	COG0635	Involved in the biosynthesis of porphyrin-containing compound
Achr_38530	COG0220	tRNA (guanine-N7-)-methyltransferase activity
Achr_38540	COG2022	thiamine diphosphate biosynthetic process
Achr_38560	COG2363	Small membrane protein
Achr_38570	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
Achr_38580	COG2003	Belongs to the UPF0758 family
Achr_38590	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
Achr_3860	COG3605	phosphoenolpyruvate-protein phosphotransferase activity
Achr_38600	COG0756	dUTP diphosphatase activity
Achr_38620	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
Achr_38640	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
Achr_38650	COG0708	Exodeoxyribonuclease III
Achr_38670	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
Achr_38680	COG1561	YicC-like family, N-terminal region
Achr_3870	COG3706	GGDEF domain
Achr_38710	COG1758	RNA polymerase activity
Achr_38720	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
Achr_38800	COG1120	ATPase activity
Achr_38830	COG2366	antibiotic biosynthetic process
Achr_3890	COG0069	glutamate synthase activity
Achr_38950	COG3251	PFAM MbtH domain protein
Achr_38960	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Achr_38990	COG3486	L-lysine 6-monooxygenase (NADPH) activity
Achr_3900	COG0730	response to heat
Achr_3910	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
Achr_3920	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
Achr_3930	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
Achr_39310	COG4149	molybdate abc transporter
Achr_39350	COG2914	Belongs to the UPF0125 (RnfH) family
Achr_39360	COG4660	Part of a membrane complex involved in electron transport
Achr_39410	COG4657	Part of a membrane complex involved in electron transport
Achr_39490	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
Achr_3950	COG0584	glycerophosphoryl diester phosphodiesterase
Achr_39500	COG3604	Transcriptional regulator
Achr_39520	COG2116	formate transmembrane transporter activity
Achr_39530	COG2271	Major facilitator Superfamily
Achr_39540	COG0450	alkyl hydroperoxide reductase
Achr_39590	COG4948	Mandelate Racemase Muconate Lactonizing
Achr_39600	COG0800	Aldolase
Achr_39620	COG1414	Transcriptional regulator
Achr_39630	COG0469	pyruvate kinase activity
Achr_39660	COG1902	pentaerythritol trinitrate reductase activity
Achr_39670	COG0667	Aldo Keto reductase
Achr_39690	COG1335	isochorismatase
Achr_39720	COG2801	Transposase and inactivated derivatives
Achr_39740	COG2207	Transcriptional regulator
Achr_39760	COG1486	melibiose metabolic process
Achr_39770	COG2211	Major facilitator Superfamily
Achr_39790	COG3386	PFAM SMP-30 Gluconolaconase
Achr_39810	COG0366	Alpha amylase catalytic
Achr_39830	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
Achr_39860	COG0667	Aldo Keto reductase
Achr_39900	COG1538	Outer membrane efflux protein
Achr_39910	COG1250	3-hydroxyacyl-CoA dehydrogenase
Achr_39960	COG0840	transmembrane signaling receptor activity
Achr_400	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
Achr_4000	COG2205	protein histidine kinase activity
Achr_40000	COG0754	glutathionylspermidine amidase activity
Achr_40020	COG3766	membrane
Achr_40090	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
Achr_40100	COG1074	ATP-dependent DNA helicase activity
Achr_40110	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
Achr_40140	COG1272	protein, Hemolysin III
Achr_40150	COG1082	Xylose isomerase domain protein TIM barrel
Achr_40270	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
Achr_40280	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
Achr_40310	COG2995	paraquat-inducible protein a
Achr_40320	COG2995	paraquat-inducible protein a
Achr_40330	COG3008	intermembrane lipid transfer
Achr_40330	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
Achr_40350	COG0628	permease
Achr_40390	COG2081	HI0933 family
Achr_40400	COG1944	ATP diphosphatase activity
Achr_40410	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
Achr_40420	COG1349	DNA-binding transcription factor activity
Achr_40440	COG3012	SEC-C Motif Domain Protein
Achr_40450	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
Achr_40480	COG0747	negative chemotaxis
Achr_40490	COG0601	transmembrane transport
Achr_40500	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
Achr_40510	COG4172	Belongs to the ABC transporter superfamily
Achr_40550	COG1262	PFAM Formylglycine-generating sulfatase enzyme
Achr_40630	COG0355	proton-transporting ATP synthase activity, rotational mechanism
Achr_40640	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
Achr_40650	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
Achr_40660	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
Achr_40670	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
Achr_40680	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
Achr_4070	COG5654	RES domain protein
Achr_40700	COG0356	it plays a direct role in the translocation of protons across the membrane
Achr_40720	COG1475	DNA binding
Achr_40730	COG1192	Involved in chromosome partitioning
Achr_40740	COG0357	Ribosomal RNA small subunit methyltransferase G
Achr_40770	COG0706	membrane insertase activity
Achr_40780	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
Achr_40790	COG0594	ribonuclease P activity
Achr_4080	COG5642	Protein of unknown function (DUF2384)
Achr_40800	COG0230	Belongs to the bacterial ribosomal protein bL34 family
Achr_4090	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
Achr_4100	COG0842	Transport permease protein
Achr_4110	COG1131	(ABC) transporter
Achr_4140	COG0840	transmembrane signaling receptor activity
Achr_4160	COG0693	protein deglycase activity
Achr_4170	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
Achr_4220	COG0210	DNA helicase
Achr_4250	COG0247	lactate metabolic process
Achr_4270	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
Achr_4350	COG0543	2 iron, 2 sulfur cluster binding
Achr_4360	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
Achr_4390	COG2194	sulfuric ester hydrolase activity
Achr_4450	COG1151	hydroxylamine reductase activity
Achr_4490	COG2814	Major facilitator Superfamily
Achr_4500	COG4772	TonB-dependent receptor
Achr_4510	COG3712	iron ion homeostasis
Achr_4520	COG1595	DNA-templated transcription, initiation
Achr_4560	COG1546	Belongs to the CinA family
Achr_4590	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
Achr_460	COG1612	heme a metabolic process
Achr_4640	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
Achr_4650	COG0358	DNA primase activity
Achr_4660	COG0828	Belongs to the bacterial ribosomal protein bS21 family
Achr_4670	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
Achr_4680	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
Achr_4690	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
Achr_470	COG0109	protoheme IX farnesyltransferase activity
Achr_4750	COG0617	tRNA 3'-terminal CCA addition
Achr_4760	COG2719	SpoVR family
Achr_4770	COG2718	Belongs to the UPF0229 family
Achr_4780	COG2766	serine protein kinase
Achr_4790	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
Achr_4800	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
Achr_4810	COG2967	ApaG domain
Achr_4820	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
Achr_4850	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
Achr_4880	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
Achr_4890	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
Achr_4900	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
Achr_4920	COG0583	DNA-binding transcription factor activity
Achr_4930	COG2249	NAD(P)H dehydrogenase (quinone) activity
Achr_4980	COG2205	protein histidine kinase activity
Achr_4990	COG0745	RESPONSE REGULATOR receiver
Achr_500	COG4085	toxin activity
Achr_500	COG1525	nuclease
Achr_500	COG0737	Belongs to the 5'-nucleotidase family
Achr_5050	COG0583	DNA-binding transcription factor activity
Achr_5130	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
Achr_5180	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
Achr_5180	COG2169	Transcriptional regulator
Achr_520	COG1108	ABC-type Mn2 Zn2 transport systems permease components
Achr_5200	COG2249	NAD(P)H dehydrogenase (quinone) activity
Achr_5230	COG1335	isochorismatase
Achr_5240	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
Achr_5260	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
Achr_5270	COG1902	pentaerythritol trinitrate reductase activity
Achr_5280	COG0667	Aldo Keto reductase
Achr_5290	COG1309	transcriptional regulator
Achr_530	COG1121	(ABC) transporter
Achr_5300	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
Achr_5310	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
Achr_5320	COG0022	dehydrogenase e1 component
Achr_5320	COG0508	dehydrogenase complex catalyzes the overall conversion of
Achr_5380	COG0512	Glutamine amidotransferase of anthranilate synthase
Achr_5390	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
Achr_540	COG0735	belongs to the Fur family
Achr_5400	COG0134	indole-3-glycerol-phosphate synthase activity
Achr_5420	COG1765	OsmC-like protein
Achr_5430	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
Achr_5440	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
Achr_5450	COG0537	adenosine 5'-monophosphoramidase activity
Achr_5470	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
Achr_5480	COG0316	Belongs to the HesB IscA family
Achr_5490	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
Achr_550	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
Achr_5500	COG0739	heme binding
Achr_5520	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
Achr_5550	COG2963	transposase activity
Achr_5560	COG2801	Transposase and inactivated derivatives
Achr_560	COG1305	Transglutaminase-like
Achr_5640	COG0330	HflC and HflK could
Achr_5650	COG0686	Belongs to the AlaDH PNT family
Achr_5660	COG1309	transcriptional regulator
Achr_5680	COG0625	glutathione transferase activity
Achr_5700	COG2814	Major facilitator Superfamily
Achr_5750	COG0204	Acyl-transferase
Achr_5770	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
Achr_5780	COG2176	DNA-directed DNA polymerase activity
Achr_5810	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
Achr_5830	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
Achr_5840	COG1040	competence protein
Achr_5860	COG0156	8-amino-7-oxononanoate synthase activity
Achr_5870	COG0596	Alpha beta hydrolase
Achr_5890	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
Achr_5900	COG0204	Acyl-transferase
Achr_5910	COG4589	Belongs to the CDS family
Achr_5950	COG0716	FMN binding
Achr_5960	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
Achr_6030	COG3237	CsbD-like
Achr_6040	COG1960	acyl-CoA dehydrogenase activity
Achr_6050	COG0450	alkyl hydroperoxide reductase
Achr_6070	COG3852	Histidine kinase
Achr_6110	COG0301	tRNA thio-modification
Achr_6110	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
Achr_6150	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
Achr_6250	COG0058	SHG alpha-glucan phosphorylase activity
Achr_6260	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
Achr_6310	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
Achr_6340	COG1490	D-aminoacyl-tRNA deacylase activity
Achr_640	COG5499	transcription regulator containing HTH domain
Achr_6420	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
Achr_6430	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
Achr_6460	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
Achr_650	COG4680	protein conserved in bacteria
Achr_6500	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
Achr_6510	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
Achr_6530	COG0018	arginyl-trna synthetase
Achr_6540	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
Achr_6550	COG0254	rRNA binding
Achr_6580	COG0281	malic enzyme
Achr_660	COG2945	thiolester hydrolase activity
Achr_660	COG0596	Alpha beta hydrolase
Achr_6650	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
Achr_6660	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
Achr_6680	COG0070	glutamate synthase
Achr_6680	COG0069	glutamate synthase activity
Achr_6680	COG0067	glutamate synthase
Achr_6690	COG0493	'glutamate synthase
Achr_6710	COG2814	Major facilitator Superfamily
Achr_6720	COG0583	DNA-binding transcription factor activity
Achr_6730	COG1192	Involved in chromosome partitioning
Achr_6750	COG3118	belongs to the thioredoxin family
Achr_6760	COG0730	response to heat
Achr_6780	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
Achr_6790	COG1196	nuclear chromosome segregation
Achr_6790	COG3264	Mechanosensitive ion channel
Achr_6800	COG3263	regulation of cellular component size
Achr_6810	COG1942	4-Oxalocrotonate Tautomerase
Achr_6830	COG0583	DNA-binding transcription factor activity
Achr_6840	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
Achr_6850	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
Achr_6900	COG0859	PFAM glycosyl transferase family 9
Achr_6910	COG0859	PFAM glycosyl transferase family 9
Achr_6920	COG0438	transferase activity, transferring glycosyl groups
Achr_6960	COG2192	nodulation
Achr_6970	COG0438	transferase activity, transferring glycosyl groups
Achr_7000	COG1442	glycosyl transferase family 8
Achr_7010	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
Achr_7040	COG1132	(ABC) transporter
Achr_7080	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
Achr_7080	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
Achr_7090	COG2755	lipolytic protein G-D-S-L family
Achr_7090	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
Achr_7110	COG0667	Aldo Keto reductase
Achr_7130	COG1519	Transferase
Achr_7140	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
Achr_7160	COG0494	nUDIX hydrolase
Achr_7200	COG1215	transferase activity, transferring glycosyl groups
Achr_7230	COG3660	Nucleoside-diphosphate-sugar epimerase
Achr_7300	COG0795	lipopolysaccharide-transporting ATPase activity
Achr_7330	COG0456	acetyltransferase
Achr_7340	COG0318	PFAM AMP-dependent synthetase and ligase
Achr_7360	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
Achr_7370	COG0156	8-amino-7-oxononanoate synthase activity
Achr_7380	COG1132	(ABC) transporter
Achr_740	COG0210	DNA helicase
Achr_7440	COG2823	Periplasmic or secreted lipoprotein
Achr_7450	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
Achr_7460	COG3150	esterase
Achr_7510	COG1741	Belongs to the pirin family
Achr_7520	COG2205	protein histidine kinase activity
Achr_7550	COG1139	Iron-sulfur cluster binding protein
Achr_7560	COG0247	lactate metabolic process
Achr_7570	COG1620	l-lactate permease
Achr_7580	COG2186	Transcriptional regulator
Achr_7590	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
Achr_7610	COG2914	Belongs to the UPF0125 (RnfH) family
Achr_7620	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
Achr_7640	COG0497	DNA recombination
Achr_7650	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
Achr_7660	COG0443	Heat shock 70 kDa protein
Achr_7670	COG0484	heat shock protein binding
Achr_7680	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
Achr_7740	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
Achr_7750	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
Achr_7760	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
Achr_7770	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
Achr_7780	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
Achr_7810	COG0779	Required for maturation of 30S ribosomal subunits
Achr_7820	COG0195	Participates in both transcription termination and antitermination
Achr_7830	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
Achr_7840	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
Achr_7870	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
Achr_7880	COG1185	polyribonucleotide nucleotidyltransferase activity
Achr_790	COG1857	crispr-associated protein
Achr_7920	COG0166	Belongs to the GPI family
Achr_7930	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
Achr_7940	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
Achr_7950	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
Achr_7970	COG0617	tRNA 3'-terminal CCA addition
Achr_8000	COG4191	Histidine kinase
Achr_8020	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
Achr_8030	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
Achr_8040	COG0436	Aminotransferase
Achr_8050	COG1489	DNA binding
Achr_8070	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
Achr_810	COG1518	maintenance of DNA repeat elements
Achr_8120	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
Achr_8140	COG3098	single-species biofilm formation
Achr_8160	COG0028	Belongs to the TPP enzyme family
Achr_8180	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
Achr_8190	COG1183	phosphatidylcholine synthase activity
Achr_820	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
Achr_8260	COG2995	paraquat-inducible protein a
Achr_8270	COG2995	paraquat-inducible protein a
Achr_8280	COG3008	intermembrane lipid transfer
Achr_8290	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
Achr_830	COG0529	Catalyzes the synthesis of activated sulfate
Achr_8310	COG0456	acetyltransferase
Achr_8340	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
Achr_8390	COG4983	Phage plasmid primase, P4 family domain protein
Achr_8460	COG3657	addiction module killer protein
Achr_8470	COG3636	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
Achr_8560	COG0582	viral genome integration into host DNA
Achr_8630	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
Achr_8650	COG3135	benzoate transporter
Achr_8660	COG0583	DNA-binding transcription factor activity
Achr_8680	COG0659	secondary active sulfate transmembrane transporter activity
Achr_870	COG3706	GGDEF domain
Achr_8720	COG1063	alcohol dehydrogenase
Achr_8740	COG0022	dehydrogenase e1 component
Achr_8750	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
Achr_8760	COG3199	ATP-NAD kinase
Achr_8770	COG1028	Short-chain dehydrogenase reductase Sdr
Achr_8780	COG3284	Transcriptional regulator
Achr_8790	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
Achr_8800	COG5424	Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ
Achr_8820	COG0535	radical SAM domain protein
Achr_8840	COG1025	Belongs to the peptidase M16 family
Achr_890	COG0700	Nucleoside recognition
Achr_8900	COG4942	peptidase
Achr_8920	COG0193	aminoacyl-tRNA hydrolase activity
Achr_8930	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
Achr_8970	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
Achr_900	COG0655	NAD(P)H dehydrogenase (quinone) activity
Achr_9010	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
Achr_9030	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
Achr_9040	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
Achr_9050	COG0415	Belongs to the DNA photolyase family
Achr_9060	COG0789	Transcriptional regulator
Achr_9080	COG3380	Catalyzes the oxidation of the 1,2-dihydro- and 1,6- dihydro- isomeric forms of beta-NAD(P) back to beta-NAD(P) . May serve to protect primary metabolism dehydrogenases from inhibition by the 1,2-dihydro- and 1,6-dihydro-beta-NAD(P) isomers
Achr_9090	COG1090	epimerase
Achr_910	COG3706	GGDEF domain
Achr_910	COG0745	RESPONSE REGULATOR receiver
Achr_9100	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
Achr_9110	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
Achr_9200	COG2135	peptidase activity
Achr_9210	COG0501	Belongs to the peptidase M48B family
Achr_9220	COG2119	membrane
Achr_9230	COG2119	membrane
Achr_9240	COG2813	Specifically methylates the guanine in position
Achr_9250	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
Achr_9270	COG2989	Protein conserved in bacteria
Achr_9290	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
Achr_9300	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
Achr_9300	COG2885	chlorophyll binding
Achr_9320	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
Achr_9350	COG0386	Belongs to the glutathione peroxidase family
Achr_9360	COG1970	mechanosensitive ion channel activity
Achr_9370	COG0523	cobalamin synthesis protein
Achr_9380	COG2879	small protein
Achr_9390	COG1966	Carbon starvation protein
Achr_9420	COG2020	methyltransferase activity
Achr_9460	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
Achr_9470	COG0488	(ABC) transporter
Achr_9560	COG1067	ATP-dependent peptidase activity
Achr_9580	COG2862	Uncharacterized protein family, UPF0114
Achr_9590	COG0545	Peptidyl-prolyl cis-trans isomerase
Achr_9600	COG0142	geranyltranstransferase activity
Achr_9610	COG0261	This protein binds to 23S rRNA in the presence of protein L20
Achr_9620	COG0211	Belongs to the bacterial ribosomal protein bL27 family
Achr_9630	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
Achr_9640	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
Achr_9650	COG3045	CreA protein
Achr_9660	COG0268	Binds directly to 16S ribosomal RNA
Achr_9670	COG0728	peptidoglycan biosynthetic process
Achr_9680	COG0196	riboflavin kinase activity
Achr_9690	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
Achr_9700	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
Achr_9710	COG1047	Peptidyl-prolyl cis-trans
Achr_9720	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
Achr_9790	COG4969	Belongs to the N-Me-Phe pilin family
Achr_980	COG1285	pathogenesis
Achr_9800	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
Achr_9840	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
Achr_9840	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
Achr_9920	COG0582	viral genome integration into host DNA
Achr_9940	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
Achr_9950	COG0343	queuine tRNA-ribosyltransferase activity
Achr_9960	COG1862	Preprotein translocase
Achr_a70	COG2337	Toxic component of a toxin-antitoxin (TA) module
Achr_b10	COG3077	Addiction module antitoxin, RelB DinJ family
Achr_c200	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
Achr_c310	COG4804	nuclease activity
Achr_c340	COG3041	Addiction module toxin RelE StbE family
Achr_c370	COG1196	nuclear chromosome segregation
Achr_c390	COG3436	PFAM IS66 Orf2 family protein
Achr_c410	COG4372	Transposase
Achr_c520	COG3451	type IV secretory pathway VirB4
Achr_c530	COG5268	conjugation
Achr_c540	COG3838	Conjugal transfer protein Trbc
Achr_c550	COG4962	Type ii secretion system protein e
Achr_d100	COG1752	Esterase of the alpha-beta hydrolase superfamily
Achr_d180	COG0582	viral genome integration into host DNA
Achr_d300	COG1741	Belongs to the pirin family
Achr_d380	COG3706	GGDEF domain
Achr_d40	COG0084	hydrolase, TatD family'
Achr_d520	COG4735	regulation of single-species biofilm formation
Achr_d550	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
Achr_d610	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
Achr_e140	COG0745	RESPONSE REGULATOR receiver
Achr_e190	COG3220	belongs to the UPF0276 family
Achr_e240	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
Achr_e250	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
Achr_e320	COG1192	Involved in chromosome partitioning
Achr_e330	COG1475	DNA binding
Achr_e340	COG1741	Belongs to the pirin family
Achr_e390	COG1475	DNA binding
Achr_e560	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
Achr_e570	COG0582	viral genome integration into host DNA
Achr_e590	COG2808	Putative FMN-binding domain
Achr_e80	COG0248	Ppx GppA phosphatase
Achr_e90	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
Achr_f1010	COG1475	DNA binding
Achr_f1020	COG1192	Involved in chromosome partitioning
Achr_f1040	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
Achr_f1050	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
Achr_f110	COG0582	viral genome integration into host DNA
Achr_f1150	COG1061	Type III restriction enzyme res subunit
Achr_f1160	COG0210	DNA helicase
Achr_f1180	COG1741	Belongs to the pirin family
Achr_f130	COG4319	ketosteroid isomerase
Achr_f1300	COG2826	transposase and inactivated derivatives, IS30 family
Achr_f1430	COG2336	PFAM SpoVT AbrB
Achr_f1440	COG2337	Toxic component of a toxin-antitoxin (TA) module
Achr_f150	COG1028	Short-chain dehydrogenase reductase Sdr
Achr_f170	COG1733	regulation of RNA biosynthetic process
Achr_f1720	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
Achr_f1730	COG2356	endonuclease I
Achr_f1750	COG4453	Protein conserved in bacteria
Achr_f1760	COG0583	DNA-binding transcription factor activity
Achr_f1780	COG2814	Major facilitator Superfamily
Achr_f1810	COG1196	nuclear chromosome segregation
Achr_f210	COG0039	L-malate dehydrogenase activity
Achr_f2100	COG1475	DNA binding
Achr_f2140	COG4615	Cyclic peptide transporter
Achr_f2180	COG4774	siderophore transport
Achr_f2200	COG3486	L-lysine 6-monooxygenase (NADPH) activity
Achr_f2210	COG0675	Transposase, IS605 OrfB family
Achr_f2220	COG1234	tRNA 3'-trailer cleavage
Achr_f2230	COG0483	inositol monophosphate 1-phosphatase activity
Achr_f2340	COG1028	Short-chain dehydrogenase reductase Sdr
Achr_f2350	COG3386	PFAM SMP-30 Gluconolaconase
Achr_f2360	COG4221	oxidoreductase activity
Achr_f2420	COG0667	Aldo Keto reductase
Achr_f2490	COG2356	endonuclease I
Achr_f2520	COG0583	DNA-binding transcription factor activity
Achr_f2540	COG2814	Major facilitator Superfamily
Achr_f2550	COG0583	DNA-binding transcription factor activity
Achr_f2560	COG2814	Major facilitator Superfamily
Achr_f2580	COG0583	DNA-binding transcription factor activity
Achr_f2620	COG0583	DNA-binding transcription factor activity
Achr_f2630	COG3293	Transposase
Achr_f270	COG1609	Transcriptional regulator
Achr_f280	COG4771	TonB-dependent receptor
Achr_f30	COG1028	Short-chain dehydrogenase reductase Sdr
Achr_f300	COG0667	Aldo Keto reductase
Achr_f310	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
Achr_f390	COG0583	DNA-binding transcription factor activity
Achr_f420	COG1028	Short-chain dehydrogenase reductase Sdr
Achr_f430	COG2814	Major facilitator Superfamily
Achr_f450	COG1028	Short-chain dehydrogenase reductase Sdr
Achr_f470	COG1902	pentaerythritol trinitrate reductase activity
Achr_f500	COG1335	isochorismatase
Achr_f560	COG1574	metal-dependent hydrolase with the TIM-barrel fold
Achr_f570	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
Achr_f690	COG1240	Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX
Achr_f690	COG1239	Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX
Achr_f740	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
Achr_f830	COG1028	Short-chain dehydrogenase reductase Sdr
Achr_f850	COG0583	DNA-binding transcription factor activity