Achr_10	SM00382	ATPases associated with a variety of cellular activities
Achr_10	SM00760	Bacterial dnaA protein helix-turn-helix domain
Achr_10000	SM01126	Achr_10000
Achr_10080	SM00271	DnaJ molecular chaperone homology domain
Achr_10120	SM00562	Achr_10120
Achr_10140	SM00028	Tetratricopeptide repeats
Achr_10190	SM00564	beta-propeller repeat
Achr_10260	SM00903	Flavin reductase like domain
Achr_10290	SM00917	LeuA allosteric (dimerisation) domain
Achr_10330	SM00564	beta-propeller repeat
Achr_10380	SM00421	helix_turn_helix, Lux Regulon
Achr_1040	SM00829	Enoylreductase
Achr_10520	SM00116	Domain in cystathionine beta-synthase and other proteins.
Achr_10520	SM01240	Achr_10520
Achr_10570	SM00062	Bacterial periplasmic substrate-binding proteins
Achr_10580	SM01211	Achr_10580
Achr_10650	SM00116	Domain in cystathionine beta-synthase and other proteins.
Achr_10650	SM01091	Transporter associated domain
Achr_10670	SM00382	ATPases associated with a variety of cellular activities
Achr_10670	SM00962	SRP54-type protein, GTPase domain
Achr_10670	SM00963	SRP54-type protein, helical bundle domain
Achr_10850	SM00267	diguanylate cyclase
Achr_10860	SM01322	Achr_10860
Achr_10900	SM00937	Achr_10900
Achr_10940	SM01154	Achr_10940
Achr_10980	SM00506	Appr-1"-p processing enzyme
Achr_11060	SM00382	ATPases associated with a variety of cellular activities
Achr_11090	SM00357	Cold shock protein domain
Achr_11150	SM00448	cheY-homologous receiver domain
Achr_11150	SM00862	Transcriptional regulatory protein, C terminal
Achr_11160	SM00387	Histidine kinase-like ATPases
Achr_11160	SM00388	His Kinase A (phosphoacceptor) domain
Achr_11350	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
Achr_11450	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
Achr_11470	SM00935	Outer membrane protein (OmpH-like)
Achr_11530	SM00481	DNA polymerase alpha chain like domain
Achr_11550	SM00977	TilS substrate C-terminal domain
Achr_11580	SM01192	Achr_11580
Achr_11580	SM01193	Achr_11580
Achr_11610	SM00829	Enoylreductase
Achr_11680	SM00257	Lysin motif
Achr_1170	SM00563	Phosphate acyltransferases
Achr_11710	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
Achr_11710	SM00534	ATPase domain of DNA mismatch repair MUTS family
Achr_11730	SM00382	ATPases associated with a variety of cellular activities
Achr_11760	SM00849	Metallo-beta-lactamase superfamily
Achr_11760	SM01027	Beta-Casp domain
Achr_11790	SM01144	Achr_11790
Achr_11800	SM00421	helix_turn_helix, Lux Regulon
Achr_11800	SM00448	cheY-homologous receiver domain
Achr_11850	SM00267	diguanylate cyclase
Achr_11900	SM00382	ATPases associated with a variety of cellular activities
Achr_11950	SM00479	Achr_11950
Achr_12020	SM00346	helix_turn_helix isocitrate lyase regulation
Achr_12030	SM00882	Coenzyme A transferase
Achr_12040	SM00882	Coenzyme A transferase
Achr_12060	SM00998	Adenylosuccinate lyase C-terminus
Achr_1220	SM00563	Phosphate acyltransferases
Achr_1230	SM00530	Helix-turn-helix XRE-family like proteins 
Achr_12330	SM00052	Putative diguanylate phosphodiesterase
Achr_12330	SM00267	diguanylate cyclase
Achr_12370	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
Achr_12390	SM00563	Phosphate acyltransferases
Achr_12410	SM00849	Metallo-beta-lactamase superfamily
Achr_12500	SM00729	Elongator protein 3, MiaB family, Radical SAM
Achr_12570	SM00073	Histidine Phosphotransfer domain
Achr_12570	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
Achr_12570	SM00387	Histidine kinase-like ATPases
Achr_12570	SM00388	His Kinase A (phosphoacceptor) domain
Achr_12570	SM00448	cheY-homologous receiver domain
Achr_12600	SM00954	Region found in RelA / SpoT proteins
Achr_12610	SM00448	cheY-homologous receiver domain
Achr_12610	SM00862	Transcriptional regulatory protein, C terminal
Achr_12620	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
Achr_12620	SM00388	His Kinase A (phosphoacceptor) domain
Achr_12860	SM00834	Putative regulatory protein
Achr_12900	SM00278	Helix-hairpin-helix DNA-binding motif class 1
Achr_12910	SM00382	ATPases associated with a variety of cellular activities
Achr_12980	SM00028	Tetratricopeptide repeats
Achr_13080	SM01130	Achr_13080
Achr_13190	SM00387	Histidine kinase-like ATPases
Achr_13190	SM00388	His Kinase A (phosphoacceptor) domain
Achr_13190	SM00448	cheY-homologous receiver domain
Achr_13250	SM00530	Helix-turn-helix XRE-family like proteins 
Achr_13270	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
Achr_13270	SM00245	tail specific protease
Achr_13280	SM00829	Enoylreductase
Achr_13450	SM00116	Domain in cystathionine beta-synthase and other proteins.
Achr_13450	SM01091	Transporter associated domain
Achr_13480	SM00387	Histidine kinase-like ATPases
Achr_13480	SM00388	His Kinase A (phosphoacceptor) domain
Achr_13480	SM00448	cheY-homologous receiver domain
Achr_13520	SM00347	helix_turn_helix multiple antibiotic resistance protein
Achr_13620	SM00382	ATPases associated with a variety of cellular activities
Achr_13660	SM00749	bacterial OsmY and nodulation domain
Achr_13860	SM00342	helix_turn_helix, arabinose operon control protein
Achr_13910	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
Achr_13970	SM00116	Domain in cystathionine beta-synthase and other proteins.
Achr_13970	SM00924	MgtE intracellular N domain
Achr_13990	SM01230	Achr_13990
Achr_140	SM01001	AIR carboxylase
Achr_14010	SM00382	ATPases associated with a variety of cellular activities
Achr_14030	SM00331	Sigma factor PP2C-like phosphatases
Achr_14030	SM00448	cheY-homologous receiver domain
Achr_14040	SM00073	Histidine Phosphotransfer domain
Achr_14120	SM01329	Achr_14120
Achr_14130	SM00859	Semialdehyde dehydrogenase, NAD binding domain
Achr_14140	SM00859	Semialdehyde dehydrogenase, NAD binding domain
Achr_14380	SM01236	Achr_14380
Achr_14390	SM00822	Achr_14390
Achr_14410	SM00448	cheY-homologous receiver domain
Achr_14410	SM00862	Transcriptional regulatory protein, C terminal
Achr_14420	SM00387	Histidine kinase-like ATPases
Achr_14420	SM00388	His Kinase A (phosphoacceptor) domain
Achr_14450	SM00357	Cold shock protein domain
Achr_1450	SM00382	ATPases associated with a variety of cellular activities
Achr_14520	SM00028	Tetratricopeptide repeats
Achr_14530	SM00327	von Willebrand factor (vWF) type A domain
Achr_14690	SM00981	Achr_14690
Achr_14720	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
Achr_14770	SM00318	Staphylococcal nuclease homologues
Achr_14800	SM00490	helicase superfamily c-terminal domain
Achr_14850	SM01101	Achr_14850
Achr_14860	SM00487	DEAD-like helicases superfamily
Achr_14860	SM00490	helicase superfamily c-terminal domain
Achr_14910	SM01101	Achr_14910
Achr_150	SM00870	Achr_150
Achr_15010	SM00487	DEAD-like helicases superfamily
Achr_15010	SM00490	helicase superfamily c-terminal domain
Achr_15040	SM00382	ATPases associated with a variety of cellular activities
Achr_15080	SM00387	Histidine kinase-like ATPases
Achr_15170	SM00478	endonuclease III
Achr_15170	SM00525	Achr_15170
Achr_15190	SM00900	Achr_15190
Achr_15300	SM01240	Achr_15300
Achr_15430	SM00769	Water Stress and Hypersensitive response
Achr_15490	SM00491	Achr_15490
Achr_1560	SM00382	ATPases associated with a variety of cellular activities
Achr_1560	SM00994	ClpX C4-type zinc finger
Achr_1560	SM01086	C-terminal, D2-small domain, of ClpB protein
Achr_15710	SM00382	ATPases associated with a variety of cellular activities
Achr_15730	SM00736	Dystroglycan-type cadherin-like domains.
Achr_15790	SM00028	Tetratricopeptide repeats
Achr_15920	SM01321	Achr_15920
Achr_15940	SM01321	Achr_15940
Achr_15980	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
Achr_16020	SM00731	SprT homologues.
Achr_16260	SM00855	Phosphoglycerate mutase family
Achr_16310	SM00450	Rhodanese Homology Domain
Achr_16340	SM00640	Glycosyl hydrolases family 32
Achr_16350	SM00341	Helicase and RNase D C-terminal
Achr_16350	SM00474	3'-5' exonuclease
Achr_16370	SM00345	helix_turn_helix gluconate operon transcriptional repressor
Achr_16370	SM00895	Achr_16370
Achr_16380	SM01130	Achr_16380
Achr_16400	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
Achr_16490	SM00382	ATPases associated with a variety of cellular activities
Achr_16520	SM01144	Achr_16520
Achr_16550	SM00341	Helicase and RNase D C-terminal
Achr_16550	SM00487	DEAD-like helicases superfamily
Achr_16550	SM00490	helicase superfamily c-terminal domain
Achr_16550	SM00956	Achr_16550
Achr_16560	SM00347	helix_turn_helix multiple antibiotic resistance protein
Achr_16600	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
Achr_16630	SM00331	Sigma factor PP2C-like phosphatases
Achr_16630	SM00448	cheY-homologous receiver domain
Achr_16760	SM00530	Helix-turn-helix XRE-family like proteins 
Achr_16870	SM00382	ATPases associated with a variety of cellular activities
Achr_16930	SM00382	ATPases associated with a variety of cellular activities
Achr_16940	SM00062	Bacterial periplasmic substrate-binding proteins
Achr_17000	SM00382	ATPases associated with a variety of cellular activities
Achr_17000	SM00930	Achr_17000
Achr_17110	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
Achr_17130	SM00062	Bacterial periplasmic substrate-binding proteins
Achr_17140	SM00062	Bacterial periplasmic substrate-binding proteins
Achr_17150	SM01007	Class II Aldolase and Adducin N-terminal domain
Achr_17210	SM00382	ATPases associated with a variety of cellular activities
Achr_17250	SM00530	Helix-turn-helix XRE-family like proteins 
Achr_17300	SM00450	Rhodanese Homology Domain
Achr_17340	SM00382	ATPases associated with a variety of cellular activities
Achr_17360	SM00822	Achr_17360
Achr_1740	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
Achr_1740	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
Achr_17480	SM00382	ATPases associated with a variety of cellular activities
Achr_17490	SM00382	ATPases associated with a variety of cellular activities
Achr_17560	SM00382	ATPases associated with a variety of cellular activities
Achr_17600	SM00342	helix_turn_helix, arabinose operon control protein
Achr_17900	SM00984	UDP binding domain
Achr_17930	SM00382	ATPases associated with a variety of cellular activities
Achr_17950	SM00984	UDP binding domain
Achr_17970	SM00226	Low molecular weight phosphatase family
Achr_18010	SM00479	Achr_18010
Achr_18090	SM00861	Transketolase, pyrimidine binding domain
Achr_18130	SM00881	CoA binding domain
Achr_18180	SM00382	ATPases associated with a variety of cellular activities
Achr_1820	SM01126	Achr_1820
Achr_18230	SM00257	Lysin motif
Achr_18240	SM00849	Metallo-beta-lactamase superfamily
Achr_18270	SM00479	Achr_18270
Achr_18290	SM00822	Achr_18290
Achr_18290	SM00825	Beta-ketoacyl synthase
Achr_18290	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
Achr_18330	SM00382	ATPases associated with a variety of cellular activities
Achr_18380	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
Achr_18440	SM00487	DEAD-like helicases superfamily
Achr_18440	SM00490	helicase superfamily c-terminal domain
Achr_18530	SM01018	B12 binding domain
Achr_18620	SM00448	cheY-homologous receiver domain
Achr_18680	SM00965	Secretin and TonB N terminus short domain
Achr_18720	SM00825	Beta-ketoacyl synthase
Achr_18750	SM00855	Phosphoglycerate mutase family
Achr_18760	SM00387	Histidine kinase-like ATPases
Achr_18760	SM00388	His Kinase A (phosphoacceptor) domain
Achr_18770	SM00382	ATPases associated with a variety of cellular activities
Achr_18770	SM00448	cheY-homologous receiver domain
Achr_1880	SM00849	Metallo-beta-lactamase superfamily
Achr_18820	SM00640	Glycosyl hydrolases family 32
Achr_18860	SM00382	ATPases associated with a variety of cellular activities
Achr_19060	SM00357	Cold shock protein domain
Achr_19080	SM00382	ATPases associated with a variety of cellular activities
Achr_19130	SM00052	Putative diguanylate phosphodiesterase
Achr_19130	SM00267	diguanylate cyclase
Achr_19200	SM00448	cheY-homologous receiver domain
Achr_19200	SM00862	Transcriptional regulatory protein, C terminal
Achr_19210	SM00387	Histidine kinase-like ATPases
Achr_19290	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
Achr_19290	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
Achr_1930	SM00052	Putative diguanylate phosphodiesterase
Achr_19300	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
Achr_19390	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
Achr_1940	SM00644	Achr_1940
Achr_19450	SM00357	Cold shock protein domain
Achr_19470	SM00382	ATPases associated with a variety of cellular activities
Achr_19470	SM01086	C-terminal, D2-small domain, of ClpB protein
Achr_19480	SM00316	Ribosomal protein S1-like RNA-binding domain
Achr_19520	SM00843	Achr_19520
Achr_19540	SM00382	ATPases associated with a variety of cellular activities
Achr_19650	SM00642	Alpha-amylase domain
Achr_19660	SM00642	Alpha-amylase domain
Achr_19670	SM00642	Alpha-amylase domain
Achr_19710	SM00342	helix_turn_helix, arabinose operon control protein
Achr_19720	SM00829	Enoylreductase
Achr_19760	SM00422	helix_turn_helix, mercury resistance
Achr_19800	SM00387	Histidine kinase-like ATPases
Achr_19800	SM00388	His Kinase A (phosphoacceptor) domain
Achr_19810	SM00448	cheY-homologous receiver domain
Achr_19810	SM00862	Transcriptional regulatory protein, C terminal
Achr_19860	SM00829	Enoylreductase
Achr_19890	SM00155	Phospholipase D. Active site motifs.
Achr_19910	SM00829	Enoylreductase
Achr_19920	SM00116	Domain in cystathionine beta-synthase and other proteins.
Achr_19930	SM00642	Alpha-amylase domain
Achr_19950	SM00642	Alpha-amylase domain
Achr_19970	SM00642	Alpha-amylase domain
Achr_20	SM00480	DNA polymerase III beta subunit
Achr_20080	SM00421	helix_turn_helix, Lux Regulon
Achr_20080	SM00448	cheY-homologous receiver domain
Achr_20090	SM00278	Helix-hairpin-helix DNA-binding motif class 1
Achr_20090	SM00465	GIY-YIG type nucleases (URI domain)
Achr_20240	SM00530	Helix-turn-helix XRE-family like proteins 
Achr_20270	SM01040	BRO family, N-terminal domain
Achr_2030	SM00878	Biotin carboxylase C-terminal domain
Achr_20310	SM00990	Achr_20310
Achr_20340	SM00530	Helix-turn-helix XRE-family like proteins 
Achr_20630	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
Achr_20630	SM00091	PAS domain
Achr_20630	SM00387	Histidine kinase-like ATPases
Achr_20630	SM00388	His Kinase A (phosphoacceptor) domain
Achr_2070	SM00382	ATPases associated with a variety of cellular activities
Achr_20810	SM00421	helix_turn_helix, Lux Regulon
Achr_20810	SM00448	cheY-homologous receiver domain
Achr_20940	SM00893	Electron transfer flavoprotein domain
Achr_20950	SM00893	Electron transfer flavoprotein domain
Achr_210	SM00965	Secretin and TonB N terminus short domain
Achr_2110	SM00966	SpoVT / AbrB like domain 
Achr_21100	SM00072	Guanylate kinase homologues.
Achr_21110	SM00318	Staphylococcal nuclease homologues
Achr_21140	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
Achr_21230	SM00746	metallochaperone-like domain
Achr_21250	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Achr_21270	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
Achr_21290	SM00382	ATPases associated with a variety of cellular activities
Achr_21340	SM00382	ATPases associated with a variety of cellular activities
Achr_21390	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
Achr_21410	SM00382	ATPases associated with a variety of cellular activities
Achr_21420	SM00382	ATPases associated with a variety of cellular activities
Achr_21520	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
Achr_21560	SM00267	diguanylate cyclase
Achr_21590	SM00953	Achr_21590
Achr_2160	SM00271	DnaJ molecular chaperone homology domain
Achr_21820	SM00354	helix_turn _helix lactose operon repressor
Achr_21890	SM00342	helix_turn_helix, arabinose operon control protein
Achr_2200	SM00198	SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains.
Achr_22020	SM00487	DEAD-like helicases superfamily
Achr_22240	SM00769	Water Stress and Hypersensitive response
Achr_22260	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
Achr_22260	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
Achr_22260	SM00493	Achr_22260
Achr_22290	SM01192	Achr_22290
Achr_22290	SM01193	Achr_22290
Achr_22360	SM00354	helix_turn _helix lactose operon repressor
Achr_22510	SM00855	Phosphoglycerate mutase family
Achr_22620	SM00858	Achr_22620
Achr_22770	SM01007	Class II Aldolase and Adducin N-terminal domain
Achr_22840	SM00463	Small MutS-related domain
Achr_22880	SM00342	helix_turn_helix, arabinose operon control protein
Achr_22890	SM00822	Achr_22890
Achr_22930	SM00411	bacterial (prokaryotic) histone like domain
Achr_22940	SM00382	ATPases associated with a variety of cellular activities
Achr_22940	SM00464	Found in ATP-dependent protease La (LON)
Achr_22950	SM00382	ATPases associated with a variety of cellular activities
Achr_22950	SM00994	ClpX C4-type zinc finger
Achr_22950	SM01086	C-terminal, D2-small domain, of ClpB protein
Achr_23020	SM00840	Achr_23020
Achr_23110	SM00448	cheY-homologous receiver domain
Achr_23110	SM01012	Achr_23110
Achr_23140	SM00364	Leucine-rich repeats, bacterial type
Achr_23140	SM00369	Leucine-rich repeats, typical (most populated) subfamily
Achr_23180	SM00220	Serine/Threonine protein kinases, catalytic domain
Achr_23180	SM00331	Sigma factor PP2C-like phosphatases
Achr_23180	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
Achr_23210	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
Achr_2330	SM00382	ATPases associated with a variety of cellular activities
Achr_23340	SM00345	helix_turn_helix gluconate operon transcriptional repressor
Achr_23340	SM00895	Achr_23340
Achr_23490	SM00382	ATPases associated with a variety of cellular activities
Achr_23530	SM00062	Bacterial periplasmic substrate-binding proteins
Achr_23550	SM00833	Cobalamin synthesis protein cobW C-terminal domain
Achr_23590	SM00460	Transglutaminase/protease-like homologues
Achr_23640	SM00831	Cation transporter/ATPase, N-terminus
Achr_23660	SM00382	ATPases associated with a variety of cellular activities
Achr_23720	SM00823	Phosphopantetheine attachment site
Achr_23720	SM00824	Thioesterase
Achr_23780	SM00267	diguanylate cyclase
Achr_2380	SM00642	Alpha-amylase domain
Achr_23810	SM01060	Achr_23810
Achr_23860	SM00899	Achr_23860
Achr_23940	SM00965	Secretin and TonB N terminus short domain
Achr_24060	SM01092	CO dehydrogenase flavoprotein C-terminal domain
Achr_24070	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
Achr_2410	SM01321	Achr_2410
Achr_24120	SM00091	PAS domain
Achr_24120	SM00421	helix_turn_helix, Lux Regulon
Achr_24180	SM00345	helix_turn_helix gluconate operon transcriptional repressor
Achr_24180	SM00895	Achr_24180
Achr_24190	SM00062	Bacterial periplasmic substrate-binding proteins
Achr_24220	SM00382	ATPases associated with a variety of cellular activities
Achr_24360	SM00450	Rhodanese Homology Domain
Achr_24370	SM00240	Forkhead associated domain
Achr_24380	SM00220	Serine/Threonine protein kinases, catalytic domain
Achr_24390	SM00331	Sigma factor PP2C-like phosphatases
Achr_24390	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
Achr_24400	SM00382	ATPases associated with a variety of cellular activities
Achr_24460	SM00028	Tetratricopeptide repeats
Achr_24520	SM01126	Achr_24520
Achr_24560	SM00422	helix_turn_helix, mercury resistance
Achr_24570	SM00411	bacterial (prokaryotic) histone like domain
Achr_24580	SM00873	B3/4 domain
Achr_24580	SM00874	tRNA synthetase B5 domain
Achr_24580	SM00896	Ferredoxin-fold anticodon binding domain
Achr_24630	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
Achr_24750	SM00346	helix_turn_helix isocitrate lyase regulation
Achr_2480	SM00382	ATPases associated with a variety of cellular activities
Achr_24810	SM00487	DEAD-like helicases superfamily
Achr_24810	SM00490	helicase superfamily c-terminal domain
Achr_25010	SM00729	Elongator protein 3, MiaB family, Radical SAM
Achr_25020	SM00100	Cyclic nucleotide-monophosphate binding domain
Achr_25020	SM00419	helix_turn_helix, cAMP Regulatory protein
Achr_25070	SM00493	Achr_25070
Achr_25090	SM00382	ATPases associated with a variety of cellular activities
Achr_25160	SM01126	Achr_25160
Achr_25190	SM00346	helix_turn_helix isocitrate lyase regulation
Achr_25280	SM00487	DEAD-like helicases superfamily
Achr_25280	SM00490	helicase superfamily c-terminal domain
Achr_25290	SM00278	Helix-hairpin-helix DNA-binding motif class 1
Achr_25290	SM00292	breast cancer carboxy-terminal domain
Achr_25290	SM00532	Ligase N family
Achr_25300	SM00771	ZipA, C-terminal domain (FtsZ-binding)
Achr_25310	SM00968	SMC proteins Flexible Hinge Domain
Achr_25320	SM00729	Elongator protein 3, MiaB family, Radical SAM
Achr_25350	SM00028	Tetratricopeptide repeats
Achr_25430	SM00382	ATPases associated with a variety of cellular activities
Achr_25500	SM00382	ATPases associated with a variety of cellular activities
Achr_25530	SM00062	Bacterial periplasmic substrate-binding proteins
Achr_25570	SM00382	ATPases associated with a variety of cellular activities
Achr_25640	SM00382	ATPases associated with a variety of cellular activities
Achr_25640	SM00448	cheY-homologous receiver domain
Achr_25650	SM00387	Histidine kinase-like ATPases
Achr_25650	SM00388	His Kinase A (phosphoacceptor) domain
Achr_25660	SM00487	DEAD-like helicases superfamily
Achr_25660	SM00490	helicase superfamily c-terminal domain
Achr_25670	SM00507	HNH nucleases
Achr_25710	SM00357	Cold shock protein domain
Achr_25810	SM00448	cheY-homologous receiver domain
Achr_25810	SM00862	Transcriptional regulatory protein, C terminal
Achr_25820	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
Achr_25820	SM00387	Histidine kinase-like ATPases
Achr_25820	SM00388	His Kinase A (phosphoacceptor) domain
Achr_25950	SM00091	PAS domain
Achr_25950	SM00382	ATPases associated with a variety of cellular activities
Achr_25970	SM00822	Achr_25970
Achr_25990	SM00882	Coenzyme A transferase
Achr_2600	SM00857	Resolvase, N terminal domain
Achr_26000	SM00882	Coenzyme A transferase
Achr_26010	SM00849	Metallo-beta-lactamase superfamily
Achr_26070	SM00487	DEAD-like helicases superfamily
Achr_26080	SM01321	Achr_26080
Achr_26190	SM00363	S4 RNA-binding domain
Achr_26200	SM00822	Achr_26200
Achr_26250	SM00829	Enoylreductase
Achr_26280	SM00382	ATPases associated with a variety of cellular activities
Achr_26340	SM00640	Glycosyl hydrolases family 32
Achr_26380	SM00893	Electron transfer flavoprotein domain
Achr_26390	SM00893	Electron transfer flavoprotein domain
Achr_26430	SM00342	helix_turn_helix, arabinose operon control protein
Achr_26500	SM00347	helix_turn_helix multiple antibiotic resistance protein
Achr_26510	SM00382	ATPases associated with a variety of cellular activities
Achr_26510	SM00487	DEAD-like helicases superfamily
Achr_26510	SM00490	helicase superfamily c-terminal domain
Achr_26510	SM00847	Helicase associated domain (HA2)  Add an annotation
Achr_26650	SM00984	UDP binding domain
Achr_26800	SM00382	ATPases associated with a variety of cellular activities
Achr_26850	SM00382	ATPases associated with a variety of cellular activities
Achr_26880	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
Achr_26890	SM00849	Metallo-beta-lactamase superfamily
Achr_26890	SM01027	Beta-Casp domain
Achr_26910	SM00411	bacterial (prokaryotic) histone like domain
Achr_26920	SM00316	Ribosomal protein S1-like RNA-binding domain
Achr_26960	SM00830	Chorismate mutase type II
Achr_26980	SM00434	DNA Topoisomerase IV
Achr_270	SM00487	DEAD-like helicases superfamily
Achr_270	SM00490	helicase superfamily c-terminal domain
Achr_27040	SM00363	S4 RNA-binding domain
Achr_27130	SM00481	DNA polymerase alpha chain like domain
Achr_27160	SM00448	cheY-homologous receiver domain
Achr_27160	SM00862	Transcriptional regulatory protein, C terminal
Achr_27180	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
Achr_27180	SM00387	Histidine kinase-like ATPases
Achr_27180	SM00388	His Kinase A (phosphoacceptor) domain
Achr_27230	SM00448	cheY-homologous receiver domain
Achr_27230	SM00862	Transcriptional regulatory protein, C terminal
Achr_27240	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
Achr_27240	SM00387	Histidine kinase-like ATPases
Achr_27240	SM00388	His Kinase A (phosphoacceptor) domain
Achr_27260	SM00382	ATPases associated with a variety of cellular activities
Achr_27330	SM00387	Histidine kinase-like ATPases
Achr_27330	SM00388	His Kinase A (phosphoacceptor) domain
Achr_27330	SM00448	cheY-homologous receiver domain
Achr_27410	SM00487	DEAD-like helicases superfamily
Achr_27410	SM00490	helicase superfamily c-terminal domain
Achr_27540	SM00347	helix_turn_helix multiple antibiotic resistance protein
Achr_27560	SM00841	Elongation factor P, C-terminal
Achr_27560	SM01185	Achr_27560
Achr_27610	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
Achr_27630	SM00448	cheY-homologous receiver domain
Achr_27640	SM00116	Domain in cystathionine beta-synthase and other proteins.
Achr_27640	SM00387	Histidine kinase-like ATPases
Achr_27680	SM00062	Bacterial periplasmic substrate-binding proteins
Achr_27690	SM00893	Electron transfer flavoprotein domain
Achr_27700	SM00893	Electron transfer flavoprotein domain
Achr_27760	SM00859	Semialdehyde dehydrogenase, NAD binding domain
Achr_27780	SM00346	helix_turn_helix isocitrate lyase regulation
Achr_27800	SM00903	Flavin reductase like domain
Achr_27920	SM00825	Beta-ketoacyl synthase
Achr_27940	SM00822	Achr_27940
Achr_27950	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
Achr_28020	SM00363	S4 RNA-binding domain
Achr_28030	SM00316	Ribosomal protein S1-like RNA-binding domain
Achr_28050	SM00226	Low molecular weight phosphatase family
Achr_28110	SM00849	Metallo-beta-lactamase superfamily
Achr_28140	SM00382	ATPases associated with a variety of cellular activities
Achr_28230	SM00900	Achr_28230
Achr_28260	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Achr_28270	SM00487	DEAD-like helicases superfamily
Achr_28270	SM00490	helicase superfamily c-terminal domain
Achr_28270	SM00982	Achr_28270
Achr_28270	SM01058	CarD-like/TRCF domain
Achr_28370	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
Achr_28370	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
Achr_28370	SM00493	Achr_28370
Achr_28410	SM00347	helix_turn_helix multiple antibiotic resistance protein
Achr_28420	SM00342	helix_turn_helix, arabinose operon control protein
Achr_28450	SM00893	Electron transfer flavoprotein domain
Achr_28460	SM00893	Electron transfer flavoprotein domain
Achr_28560	SM00382	ATPases associated with a variety of cellular activities
Achr_28580	SM00046	Diacylglycerol kinase catalytic domain (presumed)
Achr_28590	SM00852	Probable molybdopterin binding domain
Achr_28600	SM00852	Probable molybdopterin binding domain
Achr_28730	SM00479	Achr_28730
Achr_28780	SM00382	ATPases associated with a variety of cellular activities
Achr_28870	SM00382	ATPases associated with a variety of cellular activities
Achr_28870	SM00464	Found in ATP-dependent protease La (LON)
Achr_28950	SM00358	Double-stranded RNA binding motif
Achr_28950	SM00535	Ribonuclease III family
Achr_28980	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
Achr_29060	SM00507	HNH nucleases
Achr_2910	SM00878	Biotin carboxylase C-terminal domain
Achr_29120	SM00986	Uracil DNA glycosylase superfamily
Achr_29120	SM00987	UreE urease accessory protein, C-terminal domain 
Achr_29140	SM00363	S4 RNA-binding domain
Achr_29160	SM00507	HNH nucleases
Achr_29180	SM00883	Chaperonin 10 Kd subunit
Achr_29220	SM00822	Achr_29220
Achr_29270	SM00091	PAS domain
Achr_29270	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
Achr_29270	SM00387	Histidine kinase-like ATPases
Achr_29270	SM00388	His Kinase A (phosphoacceptor) domain
Achr_29320	SM00957	SecA DEAD-like domain
Achr_29320	SM00958	SecA preprotein cross-linking domain
Achr_29350	SM00864	Tubulin/FtsZ family, GTPase domain
Achr_29350	SM00865	Tubulin/FtsZ family, C-terminal domain
Achr_29360	SM00842	Cell division protein FtsA
Achr_29550	SM00749	bacterial OsmY and nodulation domain
Achr_29620	SM01126	Achr_29620
Achr_29730	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
Achr_29830	SM00382	ATPases associated with a variety of cellular activities
Achr_29840	SM00116	Domain in cystathionine beta-synthase and other proteins.
Achr_29880	SM00382	ATPases associated with a variety of cellular activities
Achr_2990	SM00448	cheY-homologous receiver domain
Achr_2990	SM00862	Transcriptional regulatory protein, C terminal
Achr_29990	SM00316	Ribosomal protein S1-like RNA-binding domain
Achr_3000	SM00387	Histidine kinase-like ATPases
Achr_3000	SM00388	His Kinase A (phosphoacceptor) domain
Achr_30060	SM00845	GatB domain
Achr_30100	SM00448	cheY-homologous receiver domain
Achr_30110	SM00387	Histidine kinase-like ATPases
Achr_30110	SM00388	His Kinase A (phosphoacceptor) domain
Achr_30160	SM00382	ATPases associated with a variety of cellular activities
Achr_30170	SM00382	ATPases associated with a variety of cellular activities
Achr_30180	SM00797	Allophanate hydrolase subunit 2
Achr_30190	SM00796	Allophanate hydrolase subunit 1
Achr_30230	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
Achr_30240	SM00671	Sel1-like repeats.
Achr_30280	SM01321	Achr_30280
Achr_30320	SM00354	helix_turn _helix lactose operon repressor
Achr_30340	SM00984	UDP binding domain
Achr_30370	SM00644	Achr_30370
Achr_30420	SM00966	SpoVT / AbrB like domain 
Achr_30450	SM01321	Achr_30450
Achr_30610	SM00382	ATPases associated with a variety of cellular activities
Achr_30610	SM01086	C-terminal, D2-small domain, of ClpB protein
Achr_30680	SM00357	Cold shock protein domain
Achr_3070	SM00382	ATPases associated with a variety of cellular activities
Achr_30760	SM00052	Putative diguanylate phosphodiesterase
Achr_30760	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
Achr_30760	SM00267	diguanylate cyclase
Achr_30780	SM01091	Transporter associated domain
Achr_30930	SM00487	DEAD-like helicases superfamily
Achr_30930	SM00490	helicase superfamily c-terminal domain
Achr_30970	SM00670	Large family of predicted nucleotide-binding domains
Achr_31070	SM00382	ATPases associated with a variety of cellular activities
Achr_31070	SM00448	cheY-homologous receiver domain
Achr_31100	SM00822	Achr_31100
Achr_31180	SM00984	UDP binding domain
Achr_31210	SM00671	Sel1-like repeats.
Achr_31230	SM00710	Parallel beta-helix repeats
Achr_31230	SM00722	Domain present in carbohydrate binding proteins and sugar hydrolses
Achr_31310	SM00487	DEAD-like helicases superfamily
Achr_31310	SM00490	helicase superfamily c-terminal domain
Achr_31380	SM00861	Transketolase, pyrimidine binding domain
Achr_3140	SM00465	GIY-YIG type nucleases (URI domain)
Achr_31400	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
Achr_31420	SM01057	Eukaryotic-type carbonic anhydrase
Achr_31450	SM00116	Domain in cystathionine beta-synthase and other proteins.
Achr_31570	SM00387	Histidine kinase-like ATPases
Achr_31570	SM00388	His Kinase A (phosphoacceptor) domain
Achr_31580	SM00448	cheY-homologous receiver domain
Achr_31580	SM00862	Transcriptional regulatory protein, C terminal
Achr_31630	SM00893	Electron transfer flavoprotein domain
Achr_31640	SM00893	Electron transfer flavoprotein domain
Achr_31770	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
Achr_31850	SM00905	Dihydroneopterin aldolase
Achr_31880	SM01235	Achr_31880
Achr_31980	SM00857	Resolvase, N terminal domain
Achr_32010	SM00857	Resolvase, N terminal domain
Achr_32090	SM00422	helix_turn_helix, mercury resistance
Achr_32130	SM00487	DEAD-like helicases superfamily
Achr_32130	SM00490	helicase superfamily c-terminal domain
Achr_32150	SM00487	DEAD-like helicases superfamily
Achr_32150	SM00490	helicase superfamily c-terminal domain
Achr_32150	SM00847	Helicase associated domain (HA2)  Add an annotation
Achr_32190	SM00344	helix_turn_helix ASNC type
Achr_32330	SM00988	UreE urease accessory protein, N-terminal domain
Achr_3240	SM00052	Putative diguanylate phosphodiesterase
Achr_3240	SM00091	PAS domain
Achr_3240	SM00267	diguanylate cyclase
Achr_32490	SM00671	Sel1-like repeats.
Achr_3250	SM00052	Putative diguanylate phosphodiesterase
Achr_3250	SM00091	PAS domain
Achr_3250	SM00267	diguanylate cyclase
Achr_32540	SM00091	PAS domain
Achr_32540	SM00421	helix_turn_helix, Lux Regulon
Achr_32550	SM00729	Elongator protein 3, MiaB family, Radical SAM
Achr_32580	SM00116	Domain in cystathionine beta-synthase and other proteins.
Achr_32580	SM01091	Transporter associated domain
Achr_3260	SM00091	PAS domain
Achr_3260	SM00267	diguanylate cyclase
Achr_32670	SM00318	Staphylococcal nuclease homologues
Achr_32740	SM00859	Semialdehyde dehydrogenase, NAD binding domain
Achr_3280	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
Achr_32850	SM00342	helix_turn_helix, arabinose operon control protein
Achr_32940	SM01126	Achr_32940
Achr_32950	SM00729	Elongator protein 3, MiaB family, Radical SAM
Achr_32980	SM00936	Penicillin-binding protein 5, C-terminal domain 
Achr_33070	SM00014	Acid phosphatase homologues
Achr_33080	SM00642	Alpha-amylase domain
Achr_33090	SM00464	Found in ATP-dependent protease La (LON)
Achr_3310	SM01230	Achr_3310
Achr_33150	SM00382	ATPases associated with a variety of cellular activities
Achr_33160	SM00267	diguanylate cyclase
Achr_33220	SM00382	ATPases associated with a variety of cellular activities
Achr_33250	SM00829	Enoylreductase
Achr_3330	SM01230	Achr_3330
Achr_33310	SM00052	Putative diguanylate phosphodiesterase
Achr_33310	SM00091	PAS domain
Achr_33310	SM00267	diguanylate cyclase
Achr_33310	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
Achr_33340	SM00861	Transketolase, pyrimidine binding domain
Achr_33460	SM01005	Alanine racemase, C-terminal domain
Achr_33470	SM00729	Elongator protein 3, MiaB family, Radical SAM
Achr_33560	SM00967	RNA 2'-O ribose methyltransferase substrate binding
Achr_33570	SM00316	Ribosomal protein S1-like RNA-binding domain
Achr_33570	SM00357	Cold shock protein domain
Achr_33570	SM00955	Achr_33570
Achr_33600	SM00788	Adenylosuccinate synthetase
Achr_33630	SM00244	prohibitin homologues
Achr_33640	SM00244	prohibitin homologues
Achr_33680	SM00853	MutL C terminal dimerisation domain
Achr_33680	SM01340	Achr_33680
Achr_33690	SM00257	Lysin motif
Achr_33690	SM00646	Achr_33690
Achr_3370	SM00530	Helix-turn-helix XRE-family like proteins 
Achr_33730	SM00479	Achr_33730
Achr_33750	SM00450	Rhodanese Homology Domain
Achr_33770	SM00052	Putative diguanylate phosphodiesterase
Achr_33770	SM00091	PAS domain
Achr_33770	SM00267	diguanylate cyclase
Achr_33780	SM00829	Enoylreductase
Achr_33870	SM00822	Achr_33870
Achr_3390	SM00382	ATPases associated with a variety of cellular activities
Achr_33900	SM00062	Bacterial periplasmic substrate-binding proteins
Achr_33930	SM00382	ATPases associated with a variety of cellular activities
Achr_33940	SM00870	Achr_33940
Achr_340	SM00642	Alpha-amylase domain
Achr_34090	SM00346	helix_turn_helix isocitrate lyase regulation
Achr_34310	SM00878	Biotin carboxylase C-terminal domain
Achr_34310	SM01209	Achr_34310
Achr_34360	SM00798	AICARFT/IMPCHase bienzyme
Achr_34360	SM00851	MGS-like domain
Achr_34370	SM01209	Achr_34370
Achr_34370	SM01210	Achr_34370
Achr_34380	SM00387	Histidine kinase-like ATPases
Achr_34380	SM00388	His Kinase A (phosphoacceptor) domain
Achr_34380	SM00448	cheY-homologous receiver domain
Achr_3450	SM00248	ankyrin repeats
Achr_3450	SM00450	Rhodanese Homology Domain
Achr_34620	SM00382	ATPases associated with a variety of cellular activities
Achr_34750	SM00822	Achr_34750
Achr_34810	SM00662	RNA polymerases D
Achr_34820	SM00363	S4 RNA-binding domain
Achr_34820	SM01390	Achr_34820
Achr_34960	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
Achr_34970	SM01374	Achr_34970
Achr_35010	SM00322	K homology RNA-binding domain
Achr_35040	SM01382	Achr_35040
Achr_35040	SM01383	Achr_35040
Achr_35080	SM01403	Achr_35080
Achr_35100	SM00838	Elongation factor G C-terminus
Achr_35100	SM00889	Elongation factor G, domain IV
Achr_35140	SM00663	RNA polymerase I subunit A N-terminus
Achr_35210	SM00649	Ribosomal protein L11/L12
Achr_35220	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
Achr_35220	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
Achr_35380	SM00420	helix_turn_helix, Deoxyribose operon repressor
Achr_35380	SM01134	Achr_35380
Achr_3540	SM00382	ATPases associated with a variety of cellular activities
Achr_35440	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Achr_35450	SM00861	Transketolase, pyrimidine binding domain
Achr_35460	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
Achr_35480	SM00825	Beta-ketoacyl synthase
Achr_35530	SM00155	Phospholipase D. Active site motifs.
Achr_35590	SM00825	Beta-ketoacyl synthase
Achr_35630	SM00984	UDP binding domain
Achr_3570	SM00116	Domain in cystathionine beta-synthase and other proteins.
Achr_3570	SM01091	Transporter associated domain
Achr_3580	SM00091	PAS domain
Achr_3580	SM00387	Histidine kinase-like ATPases
Achr_3580	SM00388	His Kinase A (phosphoacceptor) domain
Achr_35800	SM00363	S4 RNA-binding domain
Achr_35830	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
Achr_35830	SM00387	Histidine kinase-like ATPases
Achr_35830	SM00388	His Kinase A (phosphoacceptor) domain
Achr_35840	SM00448	cheY-homologous receiver domain
Achr_35840	SM00862	Transcriptional regulatory protein, C terminal
Achr_35880	SM00028	Tetratricopeptide repeats
Achr_3590	SM00448	cheY-homologous receiver domain
Achr_3590	SM00862	Transcriptional regulatory protein, C terminal
Achr_35910	SM00316	Ribosomal protein S1-like RNA-binding domain
Achr_35910	SM00732	Likely ribonuclease with RNase H fold.
Achr_35950	SM00642	Alpha-amylase domain
Achr_360	SM00947	Carbonic anhydrase
Achr_36020	SM00382	ATPases associated with a variety of cellular activities
Achr_36170	SM00267	diguanylate cyclase
Achr_36180	SM00342	helix_turn_helix, arabinose operon control protein
Achr_36230	SM01118	Achr_36230
Achr_36250	SM00382	ATPases associated with a variety of cellular activities
Achr_3630	SM00411	bacterial (prokaryotic) histone like domain
Achr_36310	SM00382	ATPases associated with a variety of cellular activities
Achr_36350	SM00382	ATPases associated with a variety of cellular activities
Achr_36420	SM00450	Rhodanese Homology Domain
Achr_36450	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
Achr_36450	SM00245	tail specific protease
Achr_3650	SM00487	DEAD-like helicases superfamily
Achr_3650	SM00490	helicase superfamily c-terminal domain
Achr_36530	SM00478	endonuclease III
Achr_36560	SM01126	Achr_36560
Achr_36670	SM01011	Aminopeptidase P, N-terminal domain
Achr_36760	SM00357	Cold shock protein domain
Achr_36760	SM00382	ATPases associated with a variety of cellular activities
Achr_36760	SM00959	Rho termination factor, N-terminal domain
Achr_36810	SM01004	Delta-aminolevulinic acid dehydratase
Achr_36880	SM00382	ATPases associated with a variety of cellular activities
Achr_36960	SM00448	cheY-homologous receiver domain
Achr_36960	SM00850	LytTr DNA-binding domain
Achr_37010	SM01219	Achr_37010
Achr_37120	SM00938	Nitrogen regulatory protein P-II
Achr_37160	SM00857	Resolvase, N terminal domain
Achr_37170	SM00857	Resolvase, N terminal domain
Achr_37180	SM00382	ATPases associated with a variety of cellular activities
Achr_37190	SM00244	prohibitin homologues
Achr_3720	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
Achr_37270	SM01060	Achr_37270
Achr_37310	SM00530	Helix-turn-helix XRE-family like proteins 
Achr_37320	SM01005	Alanine racemase, C-terminal domain
Achr_37350	SM00344	helix_turn_helix ASNC type
Achr_37370	SM00155	Phospholipase D. Active site motifs.
Achr_37420	SM01007	Class II Aldolase and Adducin N-terminal domain
Achr_37460	SM00382	ATPases associated with a variety of cellular activities
Achr_37470	SM00382	ATPases associated with a variety of cellular activities
Achr_37470	SM00962	SRP54-type protein, GTPase domain
Achr_37470	SM00963	SRP54-type protein, helical bundle domain
Achr_37740	SM00530	Helix-turn-helix XRE-family like proteins 
Achr_37920	SM00729	Elongator protein 3, MiaB family, Radical SAM
Achr_37960	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
Achr_38000	SM00387	Histidine kinase-like ATPases
Achr_38000	SM00388	His Kinase A (phosphoacceptor) domain
Achr_38010	SM00382	ATPases associated with a variety of cellular activities
Achr_38010	SM00448	cheY-homologous receiver domain
Achr_38110	SM00858	Achr_38110
Achr_38130	SM01130	Achr_38130
Achr_38140	SM00345	helix_turn_helix gluconate operon transcriptional repressor
Achr_38140	SM00895	Achr_38140
Achr_38150	SM00532	Ligase N family
Achr_38170	SM00996	S-adenosyl-L-homocysteine hydrolase
Achr_38170	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
Achr_38190	SM00487	DEAD-like helicases superfamily
Achr_38190	SM00490	helicase superfamily c-terminal domain
Achr_38210	SM00867	YceI-like domain 
Achr_38260	SM00260	Two component signalling adaptor domain
Achr_38280	SM00073	Histidine Phosphotransfer domain
Achr_38280	SM00260	Two component signalling adaptor domain
Achr_38280	SM00387	Histidine kinase-like ATPases
Achr_38280	SM00448	cheY-homologous receiver domain
Achr_38280	SM01231	Achr_38280
Achr_38290	SM00138	Methyltransferase, chemotaxis proteins 
Achr_38300	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
Achr_38310	SM00260	Two component signalling adaptor domain
Achr_38320	SM00448	cheY-homologous receiver domain
Achr_38330	SM00448	cheY-homologous receiver domain
Achr_38370	SM00732	Likely ribonuclease with RNase H fold.
Achr_38430	SM00382	ATPases associated with a variety of cellular activities
Achr_38520	SM00729	Elongator protein 3, MiaB family, Radical SAM
Achr_3860	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
Achr_38690	SM00072	Guanylate kinase homologues.
Achr_3870	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
Achr_3870	SM00091	PAS domain
Achr_3870	SM00267	diguanylate cyclase
Achr_38710	SM01409	Achr_38710
Achr_38720	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
Achr_38720	SM00954	Region found in RelA / SpoT proteins
Achr_38750	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
Achr_38750	SM00382	ATPases associated with a variety of cellular activities
Achr_38800	SM00382	ATPases associated with a variety of cellular activities
Achr_38820	SM00382	ATPases associated with a variety of cellular activities
Achr_38880	SM00823	Phosphopantetheine attachment site
Achr_38880	SM00824	Thioesterase
Achr_38890	SM00823	Phosphopantetheine attachment site
Achr_38900	SM00823	Phosphopantetheine attachment site
Achr_38910	SM00822	Achr_38910
Achr_38910	SM00823	Phosphopantetheine attachment site
Achr_38910	SM00825	Beta-ketoacyl synthase
Achr_38910	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
Achr_38920	SM00823	Phosphopantetheine attachment site
Achr_38950	SM00923	MbtH-like protein
Achr_39010	SM00923	MbtH-like protein
Achr_39100	SM00382	ATPases associated with a variety of cellular activities
Achr_39230	SM00382	ATPases associated with a variety of cellular activities
Achr_39280	SM00382	ATPases associated with a variety of cellular activities
Achr_39370	SM00900	Achr_39370
Achr_39420	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
Achr_39420	SM00091	PAS domain
Achr_39420	SM00387	Histidine kinase-like ATPases
Achr_39430	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
Achr_39430	SM00382	ATPases associated with a variety of cellular activities
Achr_39440	SM00729	Elongator protein 3, MiaB family, Radical SAM
Achr_39480	SM00450	Rhodanese Homology Domain
Achr_39500	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
Achr_39500	SM00382	ATPases associated with a variety of cellular activities
Achr_39550	SM00710	Parallel beta-helix repeats
Achr_39550	SM00722	Domain present in carbohydrate binding proteins and sugar hydrolses
Achr_39560	SM00710	Parallel beta-helix repeats
Achr_39560	SM00722	Domain present in carbohydrate binding proteins and sugar hydrolses
Achr_39570	SM00710	Parallel beta-helix repeats
Achr_39570	SM00722	Domain present in carbohydrate binding proteins and sugar hydrolses
Achr_39590	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
Achr_39620	SM00346	helix_turn_helix isocitrate lyase regulation
Achr_39710	SM00342	helix_turn_helix, arabinose operon control protein
Achr_39740	SM00342	helix_turn_helix, arabinose operon control protein
Achr_39780	SM00822	Achr_39780
Achr_39810	SM00642	Alpha-amylase domain
Achr_39840	SM00642	Alpha-amylase domain
Achr_39870	SM00346	helix_turn_helix isocitrate lyase regulation
Achr_39950	SM00052	Putative diguanylate phosphodiesterase
Achr_39950	SM00267	diguanylate cyclase
Achr_39960	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
Achr_39960	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
Achr_39970	SM00855	Phosphoglycerate mutase family
Achr_39990	SM00880	Achr_39990
Achr_40	SM00387	Histidine kinase-like ATPases
Achr_40	SM00433	TopoisomeraseII
Achr_4000	SM00387	Histidine kinase-like ATPases
Achr_4000	SM00388	His Kinase A (phosphoacceptor) domain
Achr_40180	SM00640	Glycosyl hydrolases family 32
Achr_40190	SM00642	Alpha-amylase domain
Achr_40200	SM00354	helix_turn _helix lactose operon repressor
Achr_40210	SM00382	ATPases associated with a variety of cellular activities
Achr_40420	SM00420	helix_turn_helix, Deoxyribose operon repressor
Achr_40420	SM01134	Achr_40420
Achr_40510	SM00382	ATPases associated with a variety of cellular activities
Achr_40520	SM00327	von Willebrand factor (vWF) type A domain
Achr_40570	SM00382	ATPases associated with a variety of cellular activities
Achr_40640	SM00382	ATPases associated with a variety of cellular activities
Achr_4070	SM00953	Achr_4070
Achr_40720	SM00470	ParB-like nuclease domain
Achr_40750	SM01228	Achr_40750
Achr_40780	SM01234	Achr_40780
Achr_4110	SM00382	ATPases associated with a variety of cellular activities
Achr_4130	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
Achr_4140	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
Achr_4170	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
Achr_4170	SM01232	Achr_4170
Achr_4290	SM00460	Transglutaminase/protease-like homologues
Achr_4310	SM00460	Transglutaminase/protease-like homologues
Achr_4340	SM00100	Cyclic nucleotide-monophosphate binding domain
Achr_4500	SM00965	Secretin and TonB N terminus short domain
Achr_4550	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
Achr_4550	SM00382	ATPases associated with a variety of cellular activities
Achr_4630	SM00419	helix_turn_helix, cAMP Regulatory protein
Achr_4650	SM00400	zinc finger
Achr_4650	SM00493	Achr_4650
Achr_4650	SM00766	DNA primase DnaG DnaB-binding
Achr_4680	SM01207	Achr_4680
Achr_4690	SM00905	Dihydroneopterin aldolase
Achr_4710	SM00450	Rhodanese Homology Domain
Achr_4740	SM00849	Metallo-beta-lactamase superfamily
Achr_4750	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
Achr_4780	SM00763	PrkA AAA domain
Achr_4790	SM00450	Rhodanese Homology Domain
Achr_4820	SM00650	Ribosomal RNA adenine dimethylases
Achr_4880	SM00271	DnaJ molecular chaperone homology domain
Achr_490	SM00829	Enoylreductase
Achr_4980	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
Achr_4980	SM00387	Histidine kinase-like ATPases
Achr_4980	SM00388	His Kinase A (phosphoacceptor) domain
Achr_4990	SM00448	cheY-homologous receiver domain
Achr_4990	SM00862	Transcriptional regulatory protein, C terminal
Achr_5030	SM00028	Tetratricopeptide repeats
Achr_5130	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
Achr_5210	SM00854	Bacterial capsule synthesis protein PGA_cap
Achr_5240	SM01400	Achr_5240
Achr_530	SM00382	ATPases associated with a variety of cellular activities
Achr_5320	SM00861	Transketolase, pyrimidine binding domain
Achr_5410	SM00100	Cyclic nucleotide-monophosphate binding domain
Achr_5410	SM00419	helix_turn_helix, cAMP Regulatory protein
Achr_5470	SM00859	Semialdehyde dehydrogenase, NAD binding domain
Achr_560	SM00460	Transglutaminase/protease-like homologues
Achr_5640	SM00244	prohibitin homologues
Achr_5650	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
Achr_5650	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
Achr_5690	SM00267	diguanylate cyclase
Achr_570	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
Achr_5750	SM00563	Phosphate acyltransferases
Achr_5780	SM00479	Achr_5780
Achr_5790	SM00116	Domain in cystathionine beta-synthase and other proteins.
Achr_5850	SM00729	Elongator protein 3, MiaB family, Radical SAM
Achr_5850	SM00876	Biotin and Thiamin Synthesis associated domain
Achr_5900	SM00563	Phosphate acyltransferases
Achr_5940	SM00090	RIO-like kinase
Achr_6000	SM00100	Cyclic nucleotide-monophosphate binding domain
Achr_6000	SM00419	helix_turn_helix, cAMP Regulatory protein
Achr_6020	SM00749	bacterial OsmY and nodulation domain
Achr_6060	SM00382	ATPases associated with a variety of cellular activities
Achr_6060	SM00448	cheY-homologous receiver domain
Achr_6070	SM00091	PAS domain
Achr_6070	SM00387	Histidine kinase-like ATPases
Achr_6070	SM00388	His Kinase A (phosphoacceptor) domain
Achr_6100	SM01230	Achr_6100
Achr_6110	SM00981	Achr_6110
Achr_640	SM00530	Helix-turn-helix XRE-family like proteins 
Achr_6500	SM00382	ATPases associated with a variety of cellular activities
Achr_6500	SM01086	C-terminal, D2-small domain, of ClpB protein
Achr_6530	SM00836	DALR anticodon binding domain
Achr_6530	SM01016	Arginyl tRNA synthetase N terminal dom
Achr_6540	SM00487	DEAD-like helicases superfamily
Achr_6540	SM00490	helicase superfamily c-terminal domain
Achr_6560	SM00318	Staphylococcal nuclease homologues
Achr_6580	SM00919	Malic enzyme, NAD binding domain
Achr_6580	SM01274	Achr_6580
Achr_6600	SM00842	Cell division protein FtsA
Achr_6640	SM00965	Secretin and TonB N terminus short domain
Achr_6800	SM01091	Transporter associated domain
Achr_690	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
Achr_690	SM00474	3'-5' exonuclease
Achr_690	SM00475	5'-3' exonuclease
Achr_690	SM00482	DNA polymerase A domain
Achr_70	SM00028	Tetratricopeptide repeats
Achr_70	SM00327	von Willebrand factor (vWF) type A domain
Achr_7040	SM00382	ATPases associated with a variety of cellular activities
Achr_7180	SM00267	diguanylate cyclase
Achr_7180	SM01079	Achr_7180
Achr_730	SM00052	Putative diguanylate phosphodiesterase
Achr_730	SM00267	diguanylate cyclase
Achr_7380	SM00382	ATPases associated with a variety of cellular activities
Achr_7440	SM00749	bacterial OsmY and nodulation domain
Achr_7470	SM00387	Histidine kinase-like ATPases
Achr_7470	SM00433	TopoisomeraseII
Achr_7490	SM00434	DNA Topoisomerase IV
Achr_750	SM00487	DEAD-like helicases superfamily
Achr_750	SM00490	helicase superfamily c-terminal domain
Achr_7520	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
Achr_7520	SM00387	Histidine kinase-like ATPases
Achr_7520	SM00388	His Kinase A (phosphoacceptor) domain
Achr_7580	SM00345	helix_turn_helix gluconate operon transcriptional repressor
Achr_7580	SM00895	Achr_7580
Achr_7670	SM00271	DnaJ molecular chaperone homology domain
Achr_7700	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
Achr_7710	SM00851	MGS-like domain
Achr_7710	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
Achr_7730	SM01103	Achr_7730
Achr_7750	SM00382	ATPases associated with a variety of cellular activities
Achr_780	SM01101	Achr_780
Achr_7820	SM00316	Ribosomal protein S1-like RNA-binding domain
Achr_7870	SM01387	Achr_7870
Achr_7880	SM00316	Ribosomal protein S1-like RNA-binding domain
Achr_7880	SM00322	K homology RNA-binding domain
Achr_7990	SM00382	ATPases associated with a variety of cellular activities
Achr_7990	SM00448	cheY-homologous receiver domain
Achr_8000	SM00091	PAS domain
Achr_8000	SM00387	Histidine kinase-like ATPases
Achr_8000	SM00388	His Kinase A (phosphoacceptor) domain
Achr_8080	SM00382	ATPases associated with a variety of cellular activities
Achr_8290	SM00917	LeuA allosteric (dimerisation) domain
Achr_860	SM00978	Achr_860
Achr_870	SM00267	diguanylate cyclase
Achr_8720	SM00829	Enoylreductase
Achr_8740	SM00861	Transketolase, pyrimidine binding domain
Achr_8770	SM00822	Achr_8770
Achr_8780	SM00091	PAS domain
Achr_8780	SM00382	ATPases associated with a variety of cellular activities
Achr_880	SM00860	SMI1 / KNR4 family
Achr_8820	SM00729	Elongator protein 3, MiaB family, Radical SAM
Achr_8940	SM01400	Achr_8940
Achr_8990	SM00028	Tetratricopeptide repeats
Achr_9010	SM00937	Achr_9010
Achr_9060	SM00422	helix_turn_helix, mercury resistance
Achr_910	SM00267	diguanylate cyclase
Achr_9290	SM00849	Metallo-beta-lactamase superfamily
Achr_9370	SM00833	Cobalamin synthesis protein cobW C-terminal domain
Achr_9400	SM00387	Histidine kinase-like ATPases
Achr_9400	SM01049	Achr_9400
Achr_9410	SM00421	helix_turn_helix, Lux Regulon
Achr_9410	SM00448	cheY-homologous receiver domain
Achr_9430	SM00382	ATPases associated with a variety of cellular activities
Achr_9470	SM00382	ATPases associated with a variety of cellular activities
Achr_9640	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
Achr_9680	SM00904	Riboflavin kinase
Achr_9810	SM00382	ATPases associated with a variety of cellular activities
Achr_9810	SM00448	cheY-homologous receiver domain
Achr_9820	SM00387	Histidine kinase-like ATPases
Achr_9820	SM00388	His Kinase A (phosphoacceptor) domain
Achr_9960	SM01323	Achr_9960
Achr_c10	SM00530	Helix-turn-helix XRE-family like proteins 
Achr_c200	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
Achr_c200	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
Achr_c200	SM00493	Achr_c200
Achr_c220	SM00493	Achr_c220
Achr_c230	SM00530	Helix-turn-helix XRE-family like proteins 
Achr_c280	SM00857	Resolvase, N terminal domain
Achr_c290	SM00487	DEAD-like helicases superfamily
Achr_c330	SM00411	bacterial (prokaryotic) histone like domain
Achr_c360	SM00857	Resolvase, N terminal domain
Achr_c420	SM00953	Achr_c420
Achr_c520	SM00382	ATPases associated with a variety of cellular activities
Achr_c80	SM00470	ParB-like nuclease domain
Achr_d190	SM00530	Helix-turn-helix XRE-family like proteins 
Achr_d230	SM00670	Large family of predicted nucleotide-binding domains
Achr_d310	SM00829	Enoylreductase
Achr_d330	SM00530	Helix-turn-helix XRE-family like proteins 
Achr_d380	SM00267	diguanylate cyclase
Achr_d430	SM00411	bacterial (prokaryotic) histone like domain
Achr_d540	SM00382	ATPases associated with a variety of cellular activities
Achr_d550	SM00487	DEAD-like helicases superfamily
Achr_e140	SM00448	cheY-homologous receiver domain
Achr_e140	SM00862	Transcriptional regulatory protein, C terminal
Achr_e150	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
Achr_e150	SM00387	Histidine kinase-like ATPases
Achr_e150	SM00388	His Kinase A (phosphoacceptor) domain
Achr_e330	SM00470	ParB-like nuclease domain
Achr_e390	SM00470	ParB-like nuclease domain
Achr_e520	SM00953	Achr_e520
Achr_e550	SM00830	Chorismate mutase type II
Achr_e600	SM00345	helix_turn_helix gluconate operon transcriptional repressor
Achr_e630	SM00411	bacterial (prokaryotic) histone like domain
Achr_e950	SM00642	Alpha-amylase domain
Achr_f1010	SM00470	ParB-like nuclease domain
Achr_f1150	SM00487	DEAD-like helicases superfamily
Achr_f1150	SM00490	helicase superfamily c-terminal domain
Achr_f1190	SM00829	Enoylreductase
Achr_f1250	SM00382	ATPases associated with a variety of cellular activities
Achr_f1270	SM00327	von Willebrand factor (vWF) type A domain
Achr_f1430	SM00966	SpoVT / AbrB like domain 
Achr_f1540	SM00342	helix_turn_helix, arabinose operon control protein
Achr_f1630	SM00953	Achr_f1630
Achr_f1800	SM00487	DEAD-like helicases superfamily
Achr_f1800	SM00490	helicase superfamily c-terminal domain
Achr_f1860	SM00953	Achr_f1860
Achr_f1880	SM00411	bacterial (prokaryotic) histone like domain
Achr_f1960	SM00487	DEAD-like helicases superfamily
Achr_f20	SM00953	Achr_f20
Achr_f2100	SM00470	ParB-like nuclease domain
Achr_f2140	SM00382	ATPases associated with a variety of cellular activities
Achr_f2150	SM00923	MbtH-like protein
Achr_f2160	SM00823	Phosphopantetheine attachment site
Achr_f2170	SM00823	Phosphopantetheine attachment site
Achr_f2170	SM00824	Thioesterase
Achr_f2190	SM01006	Siderophore biosynthesis protein domain
Achr_f2260	SM00411	bacterial (prokaryotic) histone like domain
Achr_f2270	SM00953	Achr_f2270
Achr_f2360	SM00822	Achr_f2360
Achr_f2590	SM00849	Metallo-beta-lactamase superfamily
Achr_f260	SM01321	Achr_f260
Achr_f2650	SM00342	helix_turn_helix, arabinose operon control protein
Achr_f270	SM00354	helix_turn _helix lactose operon repressor
Achr_f30	SM00822	Achr_f30
Achr_f310	SM00062	Bacterial periplasmic substrate-binding proteins
Achr_f420	SM00822	Achr_f420
Achr_f440	SM00829	Enoylreductase
Achr_f50	SM00411	bacterial (prokaryotic) histone like domain
Achr_f510	SM00342	helix_turn_helix, arabinose operon control protein
Achr_f520	SM00862	Transcriptional regulatory protein, C terminal
Achr_f530	SM00342	helix_turn_helix, arabinose operon control protein
Achr_f660	SM00833	Cobalamin synthesis protein cobW C-terminal domain
Achr_f680	SM00382	ATPases associated with a variety of cellular activities
