locus-tag class description NMH04_00005 PF00308 Bacterial dnaA protein NMH04_00005 PF08299 Bacterial dnaA protein helix-turn-helix NMH04_00005 PF11638 DnaA N-terminal domain NMH04_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain NMH04_00010 PF02767 DNA polymerase III beta subunit, central domain NMH04_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain NMH04_00020 PF02463 RecF/RecN/SMC N terminal domain NMH04_00025 PF04025 Domain of unknown function (DUF370) NMH04_00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMH04_00030 PF01751 Toprim domain NMH04_00030 PF00204 DNA gyrase B NMH04_00030 PF00986 DNA gyrase B subunit, carboxyl terminus NMH04_00035 PF03989 DNA gyrase C-terminal domain, beta-propeller NMH04_00035 PF00521 DNA gyrase/topoisomerase IV, subunit A NMH04_00065 PF14175 YaaC-like Protein NMH04_00070 PF00571 CBS domain NMH04_00070 PF00478 IMP dehydrogenase / GMP reductase domain NMH04_00075 PF07943 Penicillin-binding protein 5, C-terminal domain NMH04_00075 PF00768 D-alanyl-D-alanine carboxypeptidase NMH04_00085 PF00155 Aminotransferase class I and II NMH04_00085 PF00392 Bacterial regulatory proteins, gntR family NMH04_00090 PF01680 SOR/SNZ family NMH04_00095 PF01174 SNO glutamine amidotransferase family NMH04_00100 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NMH04_00100 PF02403 Seryl-tRNA synthetase N-terminal domain NMH04_00115 PF01712 Deoxynucleoside kinase NMH04_00120 PF01712 Deoxynucleoside kinase NMH04_00125 PF00704 Glycosyl hydrolases family 18 NMH04_00125 PF01476 LysM domain NMH04_00130 PF00857 Isochorismatase family NMH04_00135 PF14437 MafB19-like deaminase NMH04_00145 PF12169 DNA polymerase III subunits gamma and tau domain III NMH04_00150 PF02575 YbaB/EbfC DNA-binding family NMH04_00155 PF02132 RecR protein NMH04_00155 PF13662 Toprim domain NMH04_00160 PF10704 Protein of unknown function (DUF2508) NMH04_00165 PF07441 SigmaK-factor processing regulatory protein BofA NMH04_00195 PF10764 Inhibitor of sigma-G Gin NMH04_00200 PF10112 5-bromo-4-chloroindolyl phosphate hydrolysis protein NMH04_00205 PF05816 Toxic anion resistance protein (TelA) NMH04_00210 PF01276 Orn/Lys/Arg decarboxylase, major domain NMH04_00210 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain NMH04_00215 PF02223 Thymidylate kinase NMH04_00220 PF06153 Cyclic-di-AMP receptor NMH04_00225 PF03885 Protein of unknown function (DUF327) NMH04_00230 PF09115 DNA polymerase III, delta subunit, C terminal NMH04_00235 PF04468 PSP1 C-terminal conserved region NMH04_00240 PF06156 Initiation control protein YabA NMH04_00245 PF05175 Methyltransferase small domain NMH04_00250 PF01541 GIY-YIG catalytic domain NMH04_00255 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NMH04_00260 PF18277 AbrB C-terminal domain NMH04_00260 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin NMH04_00265 PF08264 Anticodon-binding domain of tRNA NMH04_00265 PF09334 tRNA synthetases class I (M) NMH04_00265 PF01588 Putative tRNA binding domain NMH04_00270 PF01026 TatD related DNase NMH04_00275 PF06725 3D domain NMH04_00275 PF03990 G5-linked-Ubiquitin-like domain NMH04_00275 PF07501 G5 domain NMH04_00280 PF13331 Domain of unknown function (DUF4093) NMH04_00280 PF13662 Toprim domain NMH04_00285 PF00398 Ribosomal RNA adenine dimethylase NMH04_00290 PF05582 YabG peptidase U57 NMH04_00295 PF06257 Biofilm formation stimulator VEG NMH04_00300 PF00269 Small, acid-soluble spore proteins, alpha/beta type NMH04_00305 PF08544 GHMP kinases C terminal NMH04_00305 PF00288 GHMP kinases N terminal domain NMH04_00310 PF00156 Phosphoribosyl transferase domain NMH04_00310 PF09182 Bacterial purine repressor, N-terminal NMH04_00315 PF01042 Endoribonuclease L-PSP NMH04_00320 PF04026 SpoVG NMH04_00325 PF00132 Bacterial transferase hexapeptide (six repeats) NMH04_00325 PF00483 Nucleotidyl transferase NMH04_00330 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NMH04_00330 PF14572 Phosphoribosyl synthetase-associated domain NMH04_00335 PF01386 Ribosomal L25p family NMH04_00335 PF14693 Ribosomal protein TL5, C-terminal domain NMH04_00340 PF01195 Peptidyl-tRNA hydrolase NMH04_00345 PF10955 Protein of unknown function (DUF2757) NMH04_00350 PF02559 CarD-like/TRCF domain NMH04_00350 PF00270 DEAD/DEAH box helicase NMH04_00350 PF00271 Helicase conserved C-terminal domain NMH04_00350 PF03461 TRCF domain NMH04_00350 PF17757 UvrB interaction domain NMH04_00355 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin NMH04_00355 PF15714 Stage V sporulation protein T C-terminal, transcription factor NMH04_00360 PF14667 Polysaccharide biosynthesis C-terminal domain NMH04_00360 PF01943 Polysaccharide biosynthesis protein NMH04_00365 PF03819 MazG nucleotide pyrophosphohydrolase domain NMH04_00365 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NMH04_00370 PF01479 S4 domain NMH04_00375 PF07873 YabP family NMH04_00380 PF09578 Spore cortex protein YabQ (Spore_YabQ) NMH04_00385 PF04977 Septum formation initiator NMH04_00390 PF00575 S1 RNA binding domain NMH04_00405 PF07228 Stage II sporulation protein E (SpoIIE) NMH04_00410 PF00092 von Willebrand factor type A domain NMH04_00415 PF00069 Protein kinase domain NMH04_00420 PF11734 TilS substrate C-terminal domain NMH04_00420 PF01171 PP-loop family NMH04_00420 PF09179 TilS substrate binding domain NMH04_00425 PF00156 Phosphoribosyl transferase domain NMH04_00430 PF00004 ATPase family associated with various cellular activities (AAA) NMH04_00430 PF17862 AAA+ lid domain NMH04_00430 PF06480 FtsH Extracellular NMH04_00430 PF01434 Peptidase family M41 NMH04_00435 PF03309 Type III pantothenate kinase NMH04_00440 PF01430 Hsp33 protein NMH04_00445 PF13145 PPIC-type PPIASE domain NMH04_00450 PF00291 Pyridoxal-phosphate dependent enzyme NMH04_00455 PF00425 chorismate binding enzyme NMH04_00455 PF04715 Anthranilate synthase component I, N terminal region NMH04_00460 PF00117 Glutamine amidotransferase class-I NMH04_00465 PF01063 Amino-transferase class IV NMH04_00470 PF00809 Pterin binding enzyme NMH04_00475 PF02152 Dihydroneopterin aldolase NMH04_00480 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NMH04_00485 PF01381 Helix-turn-helix NMH04_00490 PF01207 Dihydrouridine synthase (Dus) NMH04_00495 PF01336 OB-fold nucleic acid binding domain NMH04_00495 PF00152 tRNA synthetases class II (D, K and N) NMH04_00575 PF05848 CtsR N-terminal HTH domain NMH04_00575 PF17727 CtsR C-terminal dimerization domain NMH04_00580 PF02151 UvrB/uvrC motif NMH04_00585 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain NMH04_00590 PF00004 ATPase family associated with various cellular activities (AAA) NMH04_00590 PF07724 AAA domain (Cdc48 subfamily) NMH04_00590 PF17871 AAA lid domain NMH04_00590 PF02861 Clp amino terminal domain, pathogenicity island component NMH04_00590 PF10431 C-terminal, D2-small domain, of ClpB protein NMH04_00595 PF18073 Rubredoxin metal binding domain NMH04_00600 PF10635 DisA bacterial checkpoint controller linker region NMH04_00600 PF02457 DisA bacterial checkpoint controller nucleotide-binding NMH04_00610 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NMH04_00615 PF02542 YgbB family NMH04_00620 PF00749 tRNA synthetases class I (E and Q), catalytic domain NMH04_00625 PF00132 Bacterial transferase hexapeptide (six repeats) NMH04_00625 PF06426 Serine acetyltransferase, N-terminal NMH04_00630 PF09190 DALR domain NMH04_00630 PF01406 tRNA synthetases class I (C) catalytic domain NMH04_00635 PF00636 Ribonuclease III domain NMH04_00640 PF00588 SpoU rRNA Methylase family NMH04_00640 PF08032 RNA 2'-O ribose methyltransferase substrate binding NMH04_00645 PF05991 YacP-like NYN domain NMH04_00650 PF08281 Sigma-70, region 4 NMH04_00650 PF04542 Sigma-70 region 2 NMH04_00655 PF00471 Ribosomal protein L33 NMH04_00660 PF00584 SecE/Sec61-gamma subunits of protein translocation complex NMH04_00665 PF02357 Transcription termination factor nusG NMH04_00665 PF00467 KOW motif NMH04_00670 PF00298 Ribosomal protein L11, RNA binding domain NMH04_00670 PF03946 Ribosomal protein L11, N-terminal domain NMH04_00675 PF00687 Ribosomal protein L1p/L10e family NMH04_00680 PF00466 Ribosomal protein L10 NMH04_00685 PF00542 Ribosomal protein L7/L12 C-terminal domain NMH04_00685 PF16320 Ribosomal protein L7/L12 dimerisation domain NMH04_00690 PF05175 Methyltransferase small domain NMH04_00695 PF10385 RNA polymerase beta subunit external 1 domain NMH04_00695 PF04560 RNA polymerase Rpb2, domain 7 NMH04_00695 PF00562 RNA polymerase Rpb2, domain 6 NMH04_00695 PF04561 RNA polymerase Rpb2, domain 2 NMH04_00695 PF04563 RNA polymerase beta subunit NMH04_00695 PF04565 RNA polymerase Rpb2, domain 3 NMH04_00700 PF04998 RNA polymerase Rpb1, domain 5 NMH04_00700 PF04997 RNA polymerase Rpb1, domain 1 NMH04_00700 PF00623 RNA polymerase Rpb1, domain 2 NMH04_00700 PF04983 RNA polymerase Rpb1, domain 3 NMH04_00700 PF05000 RNA polymerase Rpb1, domain 4 NMH04_00705 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family NMH04_00710 PF00164 Ribosomal protein S12/S23 NMH04_00715 PF00177 Ribosomal protein S7p/S5e NMH04_00720 PF03144 Elongation factor Tu domain 2 NMH04_00720 PF00009 Elongation factor Tu GTP binding domain NMH04_00720 PF03764 Elongation factor G, domain IV NMH04_00720 PF00679 Elongation factor G C-terminus NMH04_00720 PF14492 Elongation Factor G, domain II NMH04_00725 PF00009 Elongation factor Tu GTP binding domain NMH04_00725 PF03144 Elongation factor Tu domain 2 NMH04_00725 PF03143 Elongation factor Tu C-terminal domain NMH04_00730 PF12146 Serine aminopeptidase, S33 NMH04_00735 PF00338 Ribosomal protein S10p/S20e NMH04_00740 PF00297 Ribosomal protein L3 NMH04_00745 PF00573 Ribosomal protein L4/L1 family NMH04_00750 PF00276 Ribosomal protein L23 NMH04_00755 PF00181 Ribosomal Proteins L2, RNA binding domain NMH04_00755 PF03947 Ribosomal Proteins L2, C-terminal domain NMH04_00760 PF00203 Ribosomal protein S19 NMH04_00765 PF00237 Ribosomal protein L22p/L17e NMH04_00770 PF07650 KH domain NMH04_00770 PF00189 Ribosomal protein S3, C-terminal domain NMH04_00775 PF00252 Ribosomal protein L16p/L10e NMH04_00780 PF00831 Ribosomal L29 protein NMH04_00785 PF00366 Ribosomal protein S17 NMH04_00790 PF00238 Ribosomal protein L14p/L23e NMH04_00795 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NMH04_00795 PF00467 KOW motif NMH04_00800 PF00281 Ribosomal protein L5 NMH04_00800 PF00673 ribosomal L5P family C-terminus NMH04_00805 PF00253 Ribosomal protein S14p/S29e NMH04_00810 PF00410 Ribosomal protein S8 NMH04_00815 PF00347 Ribosomal protein L6 NMH04_00820 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NMH04_00825 PF00333 Ribosomal protein S5, N-terminal domain NMH04_00825 PF03719 Ribosomal protein S5, C-terminal domain NMH04_00830 PF00327 Ribosomal protein L30p/L7e NMH04_00835 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NMH04_00840 PF00344 SecY translocase NMH04_00845 PF05191 Adenylate kinase, active site lid NMH04_00850 PF00557 Metallopeptidase family M24 NMH04_00855 PF01176 Translation initiation factor 1A / IF-1 NMH04_00860 PF00444 Ribosomal protein L36 NMH04_00865 PF00416 Ribosomal protein S13/S18 NMH04_00870 PF00411 Ribosomal protein S11 NMH04_00875 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NMH04_00875 PF01000 RNA polymerase Rpb3/RpoA insert domain NMH04_00875 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NMH04_00880 PF01196 Ribosomal protein L17 NMH04_00885 PF00005 ABC transporter NMH04_00890 PF00005 ABC transporter NMH04_00895 PF02361 Cobalt transport protein NMH04_00900 PF01416 tRNA pseudouridine synthase NMH04_00905 PF00572 Ribosomal protein L13 NMH04_00910 PF00380 Ribosomal protein S9/S16 NMH04_00915 PF13302 Acetyltransferase (GNAT) domain NMH04_00935 PF10730 Protein of unknown function (DUF2521) NMH04_00940 PF01520 N-acetylmuramoyl-L-alanine amidase NMH04_00945 PF10609 NUBPL iron-transfer P-loop NTPase NMH04_00950 PF17898 Spore germination GerD central core domain NMH04_00955 PF14089 KinB-signalling pathway activation in sporulation NMH04_00960 PF01522 Polysaccharide deacetylase NMH04_00990 PF01740 STAS domain NMH04_00990 PF00916 Sulfate permease family NMH04_00995 PF01758 Sodium Bile acid symporter family NMH04_01000 PF07075 Protein of unknown function (DUF1343) NMH04_01005 PF01915 Glycosyl hydrolase family 3 C-terminal domain NMH04_01005 PF00933 Glycosyl hydrolase family 3 N terminal domain NMH04_01010 PF00144 Beta-lactamase NMH04_01015 PF00367 phosphotransferase system, EIIB NMH04_01015 PF02378 Phosphotransferase system, EIIC NMH04_01020 PF01418 Helix-turn-helix domain, rpiR family NMH04_01020 PF01380 SIS domain NMH04_01025 PF13580 SIS domain NMH04_01055 PF00491 Arginase family NMH04_01060 PF04542 Sigma-70 region 2 NMH04_01060 PF08281 Sigma-70, region 4 NMH04_01065 PF13490 Putative zinc-finger NMH04_01070 PF02457 DisA bacterial checkpoint controller nucleotide-binding NMH04_01075 PF07949 YbbR-like protein NMH04_01080 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NMH04_01080 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NMH04_01080 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NMH04_01080 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NMH04_01085 PF01380 SIS domain NMH04_01100 PF00005 ABC transporter NMH04_01100 PF13732 Domain of unknown function (DUF4162) NMH04_01110 PF00005 ABC transporter NMH04_01115 PF00005 ABC transporter NMH04_01115 PF02687 FtsX-like permease family NMH04_01115 PF12704 MacB-like periplasmic core domain NMH04_01120 PF10400 Virulence activator alpha C-term NMH04_01120 PF03551 Transcriptional regulator PadR-like family NMH04_01130 PF00005 ABC transporter NMH04_01145 PF13905 Thioredoxin-like NMH04_01155 PF00668 Condensation domain NMH04_01155 PF00550 Phosphopantetheine attachment site NMH04_01155 PF00501 AMP-binding enzyme NMH04_01155 PF13193 AMP-binding enzyme C-terminal domain NMH04_01155 PF07993 Male sterility protein NMH04_01160 PF04235 Protein of unknown function (DUF418) NMH04_01170 PF00005 ABC transporter NMH04_01180 PF01381 Helix-turn-helix NMH04_01190 PF00561 alpha/beta hydrolase fold NMH04_01195 PF12833 Helix-turn-helix domain NMH04_01200 PF00440 Bacterial regulatory proteins, tetR family NMH04_01200 PF17922 Tetracyclin repressor-like, C-terminal domain NMH04_01215 PF00324 Amino acid permease NMH04_01220 PF03009 Glycerophosphoryl diester phosphodiesterase family NMH04_01225 PF07690 Major Facilitator Superfamily NMH04_01235 PF03190 Protein of unknown function, DUF255 NMH04_01250 PF00109 Beta-ketoacyl synthase, N-terminal domain NMH04_01250 PF02801 Beta-ketoacyl synthase, C-terminal domain NMH04_01270 PF02583 Metal-sensitive transcriptional repressor NMH04_01275 PF13686 DsrE/DsrF/DrsH-like family NMH04_01285 PF01206 Sulfurtransferase TusA NMH04_01285 PF00581 Rhodanese-like domain NMH04_01290 PF00753 Metallo-beta-lactamase superfamily NMH04_01290 PF00581 Rhodanese-like domain NMH04_01295 PF01206 Sulfurtransferase TusA NMH04_01300 PF01925 Sulfite exporter TauE/SafE NMH04_01310 PF03129 Anticodon binding domain NMH04_01310 PF09180 Prolyl-tRNA synthetase, C-terminal NMH04_01310 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NMH04_01315 PF07690 Major Facilitator Superfamily NMH04_01330 PF01047 MarR family NMH04_01335 PF04463 Protein of unknown function (DUF523) NMH04_01345 PF00248 Aldo/keto reductase family NMH04_01350 PF00465 Iron-containing alcohol dehydrogenase NMH04_01355 PF17773 UPF0176 acylphosphatase like domain NMH04_01355 PF12368 Rhodanase C-terminal NMH04_01355 PF00581 Rhodanese-like domain NMH04_01360 PF13520 Amino acid permease NMH04_01370 PF00874 PRD domain NMH04_01370 PF03123 CAT RNA binding domain NMH04_01375 PF00367 phosphotransferase system, EIIB NMH04_01375 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NMH04_01375 PF02378 Phosphotransferase system, EIIC NMH04_01380 PF00232 Glycosyl hydrolase family 1 NMH04_01395 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NMH04_01395 PF00874 PRD domain NMH04_01395 PF05043 Mga helix-turn-helix domain NMH04_01395 PF08279 HTH domain NMH04_01400 PF00480 ROK family NMH04_01405 PF01074 Glycosyl hydrolases family 38 N-terminal domain NMH04_01405 PF07748 Glycosyl hydrolases family 38 C-terminal domain NMH04_01405 PF09261 Alpha mannosidase middle domain NMH04_01415 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NMH04_01420 PF00381 PTS HPr component phosphorylation site NMH04_01420 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NMH04_01425 PF17936 Bacterial Ig domain NMH04_01425 PF00082 Subtilase family NMH04_01440 PF00324 Amino acid permease NMH04_01445 PF02574 Homocysteine S-methyltransferase NMH04_01450 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 NMH04_01450 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NMH04_01455 PF03551 Transcriptional regulator PadR-like family NMH04_01470 PF07690 Major Facilitator Superfamily NMH04_01475 PF00583 Acetyltransferase (GNAT) family NMH04_01490 PF00082 Subtilase family NMH04_01495 PF01425 Amidase NMH04_01500 PF00440 Bacterial regulatory proteins, tetR family NMH04_01505 PF07883 Cupin domain NMH04_01510 PF00107 Zinc-binding dehydrogenase NMH04_01510 PF08240 Alcohol dehydrogenase GroES-like domain NMH04_01510 PF13823 Alcohol dehydrogenase GroES-associated NMH04_01515 PF01047 MarR family NMH04_01520 PF00501 AMP-binding enzyme NMH04_01520 PF13193 AMP-binding enzyme C-terminal domain NMH04_01525 PF13520 Amino acid permease NMH04_01535 PF00561 alpha/beta hydrolase fold NMH04_01540 PF01235 Sodium:alanine symporter family NMH04_01545 PF04960 Glutaminase NMH04_01550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMH04_01555 PF08664 YcbB domain NMH04_01555 PF00072 Response regulator receiver domain NMH04_01560 PF02810 SEC-C motif NMH04_01560 PF05225 helix-turn-helix, Psq domain NMH04_01565 PF17118 Domain of unknown function (DUF5105) NMH04_01565 PF11611 Domain of unknown function (DUF4352) NMH04_01570 PF00248 Aldo/keto reductase family NMH04_01575 PF14501 GHKL domain NMH04_01580 PF04397 LytTr DNA-binding domain NMH04_01580 PF00072 Response regulator receiver domain NMH04_01585 PF00005 ABC transporter NMH04_01590 PF12679 ABC-2 family transporter protein NMH04_01600 PF17118 Domain of unknown function (DUF5105) NMH04_01600 PF11611 Domain of unknown function (DUF4352) NMH04_01605 PF07486 Cell Wall Hydrolase NMH04_01620 PF00296 Luciferase-like monooxygenase NMH04_01625 PF02342 TerD domain NMH04_01630 PF02342 TerD domain NMH04_01635 PF02342 TerD domain NMH04_01640 PF03741 Integral membrane protein TerC family NMH04_01665 PF14266 Putative component of 'biosynthetic module' NMH04_01670 PF05816 Toxic anion resistance protein (TelA) NMH04_01675 PF00571 CBS domain NMH04_01675 PF00005 ABC transporter NMH04_01680 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_01685 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NMH04_01700 PF01546 Peptidase family M20/M25/M40 NMH04_01700 PF07687 Peptidase dimerisation domain NMH04_01705 PF03606 C4-dicarboxylate anaerobic carrier NMH04_01710 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NMH04_01710 PF00056 lactate/malate dehydrogenase, NAD binding domain NMH04_01715 PF02652 L-lactate permease NMH04_01720 PF00356 Bacterial regulatory proteins, lacI family NMH04_01725 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NMH04_01730 PF05116 Sucrose-6F-phosphate phosphohydrolase NMH04_01735 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NMH04_01735 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NMH04_01740 PF07690 Major Facilitator Superfamily NMH04_01745 PF01810 LysE type translocator NMH04_01760 PF08892 YqcI/YcgG family NMH04_01765 PF00324 Amino acid permease NMH04_01770 PF09347 Domain of unknown function (DUF1989) NMH04_01775 PF02540 NAD synthase NMH04_01790 PF18801 response regulator aspartate phosphatase H, N terminal NMH04_01790 PF13181 Tetratricopeptide repeat NMH04_01795 PF14040 Deoxyribonuclease NucA/NucB NMH04_01805 PF00171 Aldehyde dehydrogenase family NMH04_01810 PF01487 Type I 3-dehydroquinase NMH04_01815 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NMH04_01815 PF00205 Thiamine pyrophosphate enzyme, central domain NMH04_01815 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NMH04_01825 PF02515 CoA-transferase family III NMH04_01830 PF07690 Major Facilitator Superfamily NMH04_01840 PF09339 IclR helix-turn-helix domain NMH04_01840 PF01614 Bacterial transcriptional regulator NMH04_01845 PF01202 Shikimate kinase NMH04_01850 PF00701 Dihydrodipicolinate synthetase family NMH04_01855 PF00356 Bacterial regulatory proteins, lacI family NMH04_01860 PF07690 Major Facilitator Superfamily NMH04_01865 PF08241 Methyltransferase domain NMH04_01870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMH04_01870 PF03466 LysR substrate binding domain NMH04_01875 PF00795 Carbon-nitrogen hydrolase NMH04_01880 PF05448 Acetyl xylan esterase (AXE1) NMH04_01890 PF10127 RNA repair pathway DNA polymerase beta family NMH04_01895 PF01619 Proline dehydrogenase NMH04_01900 PF00171 Aldehyde dehydrogenase family NMH04_01905 PF17853 GGDEF-like domain NMH04_01905 PF13556 PucR C-terminal helix-turn-helix domain NMH04_01910 PF02040 Arsenical pump membrane protein NMH04_01915 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_01920 PF00497 Bacterial extracellular solute-binding proteins, family 3 NMH04_01925 PF10925 Protein of unknown function (DUF2680) NMH04_01930 PF12706 Beta-lactamase superfamily domain NMH04_01935 PF01037 Lrp/AsnC ligand binding domain NMH04_01940 PF02522 Aminoglycoside 3-N-acetyltransferase NMH04_01945 PF11033 Competence protein J (ComJ) NMH04_01950 PF00672 HAMP domain NMH04_01950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMH04_01950 PF17202 Single cache domain 3 NMH04_01955 PF14040 Deoxyribonuclease NucA/NucB NMH04_01960 PF05378 Hydantoinase/oxoprolinase N-terminal region NMH04_01960 PF01968 Hydantoinase/oxoprolinase NMH04_01975 PF00005 ABC transporter NMH04_01975 PF08402 TOBE domain NMH04_01980 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_01985 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_01990 PF13193 AMP-binding enzyme C-terminal domain NMH04_01990 PF00668 Condensation domain NMH04_01990 PF00501 AMP-binding enzyme NMH04_01990 PF00550 Phosphopantetheine attachment site NMH04_01995 PF00501 AMP-binding enzyme NMH04_01995 PF13193 AMP-binding enzyme C-terminal domain NMH04_01995 PF00668 Condensation domain NMH04_01995 PF00550 Phosphopantetheine attachment site NMH04_02000 PF00975 Thioesterase domain NMH04_02000 PF00501 AMP-binding enzyme NMH04_02000 PF13193 AMP-binding enzyme C-terminal domain NMH04_02000 PF00550 Phosphopantetheine attachment site NMH04_02000 PF00668 Condensation domain NMH04_02005 PF00550 Phosphopantetheine attachment site NMH04_02005 PF00668 Condensation domain NMH04_02005 PF13193 AMP-binding enzyme C-terminal domain NMH04_02005 PF00501 AMP-binding enzyme NMH04_02010 PF00550 Phosphopantetheine attachment site NMH04_02010 PF13193 AMP-binding enzyme C-terminal domain NMH04_02010 PF00501 AMP-binding enzyme NMH04_02010 PF00668 Condensation domain NMH04_02015 PF00975 Thioesterase domain NMH04_02020 PF00892 EamA-like transporter family NMH04_02025 PF00155 Aminotransferase class I and II NMH04_02025 PF00392 Bacterial regulatory proteins, gntR family NMH04_02030 PF01648 4'-phosphopantetheinyl transferase superfamily NMH04_02035 PF12833 Helix-turn-helix domain NMH04_02035 PF06445 GyrI-like small molecule binding domain NMH04_02050 PF02872 5'-nucleotidase, C-terminal domain NMH04_02050 PF00149 Calcineurin-like phosphoesterase NMH04_02055 PF04203 Sortase domain NMH04_02060 PF18277 AbrB C-terminal domain NMH04_02060 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin NMH04_02065 PF00005 ABC transporter NMH04_02070 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_02075 PF00497 Bacterial extracellular solute-binding proteins, family 3 NMH04_02080 PF01738 Dienelactone hydrolase family NMH04_02085 PF00324 Amino acid permease NMH04_02090 PF00854 POT family NMH04_02095 PF13229 Right handed beta helix region NMH04_02095 PF12708 Pectate lyase superfamily protein NMH04_02100 PF00296 Luciferase-like monooxygenase NMH04_02105 PF00583 Acetyltransferase (GNAT) family NMH04_02110 PF00497 Bacterial extracellular solute-binding proteins, family 3 NMH04_02115 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_02120 PF00005 ABC transporter NMH04_02125 PF01546 Peptidase family M20/M25/M40 NMH04_02125 PF07687 Peptidase dimerisation domain NMH04_02130 PF03972 MmgE/PrpD family NMH04_02140 PF00486 Transcriptional regulatory protein, C terminal NMH04_02140 PF00072 Response regulator receiver domain NMH04_02145 PF00512 His Kinase A (phospho-acceptor) domain NMH04_02145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMH04_02145 PF00672 HAMP domain NMH04_02150 PF01740 STAS domain NMH04_02150 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain NMH04_02155 PF13840 ACT domain NMH04_02155 PF00696 Amino acid kinase family NMH04_02160 PF07690 Major Facilitator Superfamily NMH04_02165 PF00440 Bacterial regulatory proteins, tetR family NMH04_02175 PF01022 Bacterial regulatory protein, arsR family NMH04_02185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMH04_02185 PF03466 LysR substrate binding domain NMH04_02190 PF00155 Aminotransferase class I and II NMH04_02190 PF00392 Bacterial regulatory proteins, gntR family NMH04_02195 PF00202 Aminotransferase class-III NMH04_02200 PF13520 Amino acid permease NMH04_02205 PF00171 Aldehyde dehydrogenase family NMH04_02210 PF02525 Flavodoxin-like fold NMH04_02215 PF07987 Domain of unkown function (DUF1775) NMH04_02220 PF13115 YtkA-like NMH04_02220 PF05425 Copper resistance protein D NMH04_02220 PF04234 CopC domain NMH04_02225 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NMH04_02225 PF02378 Phosphotransferase system, EIIC NMH04_02230 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NMH04_02235 PF01232 Mannitol dehydrogenase Rossmann domain NMH04_02235 PF08125 Mannitol dehydrogenase C-terminal domain NMH04_02240 PF00672 HAMP domain NMH04_02240 PF02743 Cache domain NMH04_02240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMH04_02275 PF12681 Glyoxalase-like domain NMH04_02280 PF05901 Excalibur calcium-binding domain NMH04_02300 PF18801 response regulator aspartate phosphatase H, N terminal NMH04_02305 PF03746 LamB/YcsF family NMH04_02310 PF01566 Natural resistance-associated macrophage protein NMH04_02315 PF07286 Protein of unknown function (DUF1445) NMH04_02320 PF02682 Carboxyltransferase domain, subdomain C and D NMH04_02325 PF02626 Carboxyltransferase domain, subdomain A and B NMH04_02330 PF09339 IclR helix-turn-helix domain NMH04_02330 PF01614 Bacterial transcriptional regulator NMH04_02335 PF02525 Flavodoxin-like fold NMH04_02340 PF13472 GDSL-like Lipase/Acylhydrolase family NMH04_02350 PF00874 PRD domain NMH04_02350 PF08279 HTH domain NMH04_02350 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NMH04_02350 PF05043 Mga helix-turn-helix domain NMH04_02350 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NMH04_02355 PF13649 Methyltransferase domain NMH04_02365 PF16242 Pyridoxamine 5'-phosphate oxidase like NMH04_02385 PF12823 Domain of unknown function (DUF3817) NMH04_02390 PF00392 Bacterial regulatory proteins, gntR family NMH04_02390 PF07729 FCD domain NMH04_02395 PF12833 Helix-turn-helix domain NMH04_02395 PF02311 AraC-like ligand binding domain NMH04_02400 PF00892 EamA-like transporter family NMH04_02405 PF00180 Isocitrate/isopropylmalate dehydrogenase NMH04_02410 PF01751 Toprim domain NMH04_02410 PF01131 DNA topoisomerase NMH04_02420 PF00990 Diguanylate cyclase, GGDEF domain NMH04_02425 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) NMH04_02435 PF03170 Bacterial cellulose synthase subunit NMH04_02440 PF13520 Amino acid permease NMH04_02445 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NMH04_02445 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NMH04_02445 PF00205 Thiamine pyrophosphate enzyme, central domain NMH04_02450 PF14410 HNH/ENDO VII superfamily nuclease with conserved GHE residues NMH04_02450 PF14449 Pre-toxin TG NMH04_02450 PF04740 LXG domain of WXG superfamily NMH04_02480 PF13302 Acetyltransferase (GNAT) domain NMH04_02485 PF01566 Natural resistance-associated macrophage protein NMH04_02490 PF04226 Transglycosylase associated protein NMH04_02495 PF12787 EcsC protein family NMH04_02500 PF03480 Bacterial extracellular solute-binding protein, family 7 NMH04_02505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMH04_02505 PF17203 Single cache domain 3 NMH04_02505 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain NMH04_02510 PF08279 HTH domain NMH04_02510 PF00072 Response regulator receiver domain NMH04_02515 PF00375 Sodium:dicarboxylate symporter family NMH04_02520 PF01594 AI-2E family transporter NMH04_02525 PF00375 Sodium:dicarboxylate symporter family NMH04_02530 PF00005 ABC transporter NMH04_02545 PF13040 Fur-regulated basic protein B NMH04_02550 PF00085 Thioredoxin NMH04_02555 PF07478 D-ala D-ala ligase C-terminus NMH04_02555 PF01820 D-ala D-ala ligase N-terminus NMH04_02560 PF08245 Mur ligase middle domain NMH04_02560 PF02875 Mur ligase family, glutamate ligase domain NMH04_02560 PF01225 Mur ligase family, catalytic domain NMH04_02565 PF12146 Serine aminopeptidase, S33 NMH04_02575 PF00270 DEAD/DEAH box helicase NMH04_02575 PF00271 Helicase conserved C-terminal domain NMH04_02580 PF03703 Bacterial PH domain NMH04_02585 PF03703 Bacterial PH domain NMH04_02590 PF01694 Rhomboid family NMH04_02595 PF01648 4'-phosphopantetheinyl transferase superfamily NMH04_02605 PF00842 Alanine racemase, C-terminal domain NMH04_02605 PF01168 Alanine racemase, N-terminal domain NMH04_02610 PF01402 Ribbon-helix-helix protein, copG family NMH04_02615 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system NMH04_02620 PF08678 Rsbr N terminal NMH04_02620 PF01740 STAS domain NMH04_02625 PF01740 STAS domain NMH04_02630 PF13581 Histidine kinase-like ATPase domain NMH04_02635 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain NMH04_02635 PF07228 Stage II sporulation protein E (SpoIIE) NMH04_02640 PF01740 STAS domain NMH04_02645 PF13581 Histidine kinase-like ATPase domain NMH04_02650 PF04542 Sigma-70 region 2 NMH04_02650 PF04539 Sigma-70 region 3 NMH04_02650 PF04545 Sigma-70, region 4 NMH04_02655 PF07228 Stage II sporulation protein E (SpoIIE) NMH04_02660 PF16921 Tex protein YqgF-like domain NMH04_02660 PF00575 S1 RNA binding domain NMH04_02660 PF09371 Tex-like protein N-terminal domain NMH04_02660 PF17674 HHH domain NMH04_02670 PF10263 SprT-like family NMH04_02670 PF17283 SprT-like zinc ribbon domain NMH04_02675 PF00676 Dehydrogenase E1 component NMH04_02680 PF02779 Transketolase, pyrimidine binding domain NMH04_02680 PF02780 Transketolase, C-terminal domain NMH04_02685 PF02817 e3 binding domain NMH04_02685 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NMH04_02685 PF00364 Biotin-requiring enzyme NMH04_02690 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMH04_02690 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NMH04_02695 PF02954 Bacterial regulatory protein, Fis family NMH04_02695 PF00158 Sigma-54 interaction domain NMH04_02695 PF01590 GAF domain NMH04_02735 PF14659 Phage integrase, N-terminal SAM-like domain NMH04_02735 PF00589 Phage integrase family NMH04_02740 PF06114 IrrE N-terminal-like domain NMH04_02745 PF01381 Helix-turn-helix NMH04_02765 PF06125 Bacterial protein of unknown function (DUF961) NMH04_02775 PF18106 Rolling Circle replication initiation protein N-terminal domain NMH04_02775 PF02486 Replication initiation factor NMH04_02830 PF00437 Type II/IV secretion system protein NMH04_02860 PF12642 Conjugative transposon protein TcpC NMH04_02870 PF12648 TcpE family NMH04_02885 PF00877 NlpC/P60 family NMH04_02895 PF18801 response regulator aspartate phosphatase H, N terminal NMH04_02910 PF00440 Bacterial regulatory proteins, tetR family NMH04_02915 PF00364 Biotin-requiring enzyme NMH04_02915 PF00561 alpha/beta hydrolase fold NMH04_02920 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NMH04_02925 PF00106 short chain dehydrogenase NMH04_02930 PF00106 short chain dehydrogenase NMH04_02930 PF00561 alpha/beta hydrolase fold NMH04_02935 PF00107 Zinc-binding dehydrogenase NMH04_02935 PF08240 Alcohol dehydrogenase GroES-like domain NMH04_02940 PF00313 'Cold-shock' DNA-binding domain NMH04_02945 PF02559 CarD-like/TRCF domain NMH04_02950 PF00107 Zinc-binding dehydrogenase NMH04_02950 PF08240 Alcohol dehydrogenase GroES-like domain NMH04_02955 PF13411 MerR HTH family regulatory protein NMH04_02960 PF00722 Glycosyl hydrolases family 16 NMH04_02965 PF00440 Bacterial regulatory proteins, tetR family NMH04_02970 PF07690 Major Facilitator Superfamily NMH04_02975 PF07859 alpha/beta hydrolase fold NMH04_02985 PF00106 short chain dehydrogenase NMH04_02995 PF00710 Asparaginase, N-terminal NMH04_02995 PF17763 Glutaminase/Asparaginase C-terminal domain NMH04_03000 PF12697 Alpha/beta hydrolase family NMH04_03015 PF16925 Tetracyclin repressor-like, C-terminal domain NMH04_03015 PF00440 Bacterial regulatory proteins, tetR family NMH04_03020 PF07690 Major Facilitator Superfamily NMH04_03025 PF01757 Acyltransferase family NMH04_03030 PF03176 MMPL family NMH04_03035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMH04_03035 PF07730 Histidine kinase NMH04_03040 PF00196 Bacterial regulatory proteins, luxR family NMH04_03040 PF00072 Response regulator receiver domain NMH04_03070 PF00583 Acetyltransferase (GNAT) family NMH04_03075 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NMH04_03085 PF00440 Bacterial regulatory proteins, tetR family NMH04_03090 PF01872 RibD C-terminal domain NMH04_03095 PF01047 MarR family NMH04_03100 PF00881 Nitroreductase family NMH04_03115 PF07883 Cupin domain NMH04_03115 PF01381 Helix-turn-helix NMH04_03120 PF01810 LysE type translocator NMH04_03125 PF00583 Acetyltransferase (GNAT) family NMH04_03135 PF01596 O-methyltransferase NMH04_03145 PF03591 AzlC protein NMH04_03150 PF00892 EamA-like transporter family NMH04_03160 PF00375 Sodium:dicarboxylate symporter family NMH04_03200 PF00586 AIR synthase related protein, N-terminal domain NMH04_03200 PF02769 AIR synthase related protein, C-terminal domain NMH04_03205 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NMH04_03210 PF00814 Glycoprotease family NMH04_03215 PF00583 Acetyltransferase (GNAT) family NMH04_03220 PF00814 Glycoprotease family NMH04_03225 PF00005 ABC transporter NMH04_03225 PF12848 ABC transporter NMH04_03225 PF16326 ABC transporter C-terminal domain NMH04_03230 PF01967 MoaC family NMH04_03235 PF06971 Putative DNA-binding protein N-terminus NMH04_03235 PF02629 CoA binding domain NMH04_03240 PF02416 mttA/Hcf106 family NMH04_03245 PF00902 Sec-independent protein translocase protein (TatC) NMH04_03255 PF14146 Domain of unknown function (DUF4305) NMH04_03260 PF02517 CPBP intramembrane metalloprotease NMH04_03265 PF00166 Chaperonin 10 Kd subunit NMH04_03270 PF00118 TCP-1/cpn60 chaperonin family NMH04_03275 PF01047 MarR family NMH04_03280 PF00583 Acetyltransferase (GNAT) family NMH04_03285 PF04299 Putative FMN-binding domain NMH04_03315 PF03330 Lytic transglycolase NMH04_03320 PF07676 WD40-like Beta Propeller Repeat NMH04_03330 PF00394 Multicopper oxidase NMH04_03330 PF07732 Multicopper oxidase NMH04_03330 PF07731 Multicopper oxidase NMH04_03335 PF00324 Amino acid permease NMH04_03340 PF01545 Cation efflux family NMH04_03340 PF16916 Dimerisation domain of Zinc Transporter NMH04_03345 PF07726 ATPase family associated with various cellular activities (AAA) NMH04_03345 PF17863 AAA lid domain NMH04_03350 PF01882 Protein of unknown function DUF58 NMH04_03355 PF01841 Transglutaminase-like superfamily NMH04_03355 PF13559 Domain of unknown function (DUF4129) NMH04_03355 PF11992 Domain of unknown function (DUF3488) NMH04_03360 PF00117 Glutamine amidotransferase class-I NMH04_03360 PF00958 GMP synthase C terminal domain NMH04_03360 PF02540 NAD synthase NMH04_03365 PF04073 Aminoacyl-tRNA editing domain NMH04_03370 PF12833 Helix-turn-helix domain NMH04_03375 PF08502 LeuA allosteric (dimerisation) domain NMH04_03375 PF00682 HMGL-like NMH04_03380 PF12833 Helix-turn-helix domain NMH04_03405 PF00072 Response regulator receiver domain NMH04_03405 PF04397 LytTr DNA-binding domain NMH04_03410 PF13302 Acetyltransferase (GNAT) domain NMH04_03425 PF08281 Sigma-70, region 4 NMH04_03425 PF04542 Sigma-70 region 2 NMH04_03435 PF07690 Major Facilitator Superfamily NMH04_03440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMH04_03440 PF03466 LysR substrate binding domain NMH04_03445 PF00860 Permease family NMH04_03455 PF10055 Uncharacterized small protein (DUF2292) NMH04_03465 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NMH04_03470 PF14044 NETI protein NMH04_03475 PF00731 AIR carboxylase NMH04_03480 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain NMH04_03480 PF02222 ATP-grasp domain NMH04_03485 PF00206 Lyase NMH04_03485 PF10397 Adenylosuccinate lyase C-terminus NMH04_03490 PF01259 SAICAR synthetase NMH04_03495 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase NMH04_03505 PF00586 AIR synthase related protein, N-terminal domain NMH04_03505 PF02769 AIR synthase related protein, C-terminal domain NMH04_03505 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NMH04_03510 PF00156 Phosphoribosyl transferase domain NMH04_03515 PF00586 AIR synthase related protein, N-terminal domain NMH04_03515 PF02769 AIR synthase related protein, C-terminal domain NMH04_03520 PF00551 Formyl transferase NMH04_03525 PF01808 AICARFT/IMPCHase bienzyme NMH04_03525 PF02142 MGS-like domain NMH04_03530 PF02844 Phosphoribosylglycinamide synthetase, N domain NMH04_03530 PF02843 Phosphoribosylglycinamide synthetase, C domain NMH04_03530 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NMH04_03550 PF00202 Aminotransferase class-III NMH04_03555 PF01144 Coenzyme A transferase NMH04_03560 PF01144 Coenzyme A transferase NMH04_03565 PF01546 Peptidase family M20/M25/M40 NMH04_03565 PF07687 Peptidase dimerisation domain NMH04_03570 PF11127 Protein of unknown function (DUF2892) NMH04_03575 PF01979 Amidohydrolase family NMH04_03575 PF13382 Adenine deaminase C-terminal domain NMH04_03580 PF01371 Trp repressor protein NMH04_03590 PF01645 Conserved region in glutamate synthase NMH04_03605 PF01884 PcrB family NMH04_03610 PF00580 UvrD/REP helicase N-terminal domain NMH04_03610 PF13361 UvrD-like helicase C-terminal domain NMH04_03615 PF00533 BRCA1 C Terminus (BRCT) domain NMH04_03615 PF01653 NAD-dependent DNA ligase adenylation domain NMH04_03615 PF03120 NAD-dependent DNA ligase OB-fold domain NMH04_03615 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NMH04_03615 PF12826 Helix-hairpin-helix motif NMH04_03620 PF07537 CamS sex pheromone cAM373 precursor NMH04_03625 PF01636 Phosphotransferase enzyme family NMH04_03630 PF02308 MgtC family NMH04_03635 PF00474 Sodium:solute symporter family NMH04_03640 PF02686 Glu-tRNAGln amidotransferase C subunit NMH04_03645 PF01425 Amidase NMH04_03650 PF02934 GatB/GatE catalytic domain NMH04_03650 PF02637 GatB domain NMH04_03655 PF00440 Bacterial regulatory proteins, tetR family NMH04_03660 PF00873 AcrB/AcrD/AcrF family NMH04_03665 PF01156 Inosine-uridine preferring nucleoside hydrolase NMH04_03670 PF00781 Diacylglycerol kinase catalytic domain NMH04_03675 PF05958 tRNA (Uracil-5-)-methyltransferase NMH04_03675 PF01938 TRAM domain NMH04_03685 PF14449 Pre-toxin TG NMH04_03685 PF04740 LXG domain of WXG superfamily NMH04_03690 PF01207 Dihydrouridine synthase (Dus) NMH04_03705 PF02082 Transcriptional regulator NMH04_03710 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMH04_03720 PF13021 Domain of unknown function (DUF3885) NMH04_03725 PF02056 Family 4 glycosyl hydrolase NMH04_03725 PF11975 Family 4 glycosyl hydrolase C-terminal domain NMH04_03730 PF01380 SIS domain NMH04_03730 PF01418 Helix-turn-helix domain, rpiR family NMH04_03735 PF07690 Major Facilitator Superfamily NMH04_03745 PF03466 LysR substrate binding domain NMH04_03745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMH04_03755 PF13037 Domain of unknown function (DUF3898) NMH04_03755 PF13039 Protein of unknown function (DUF3900) NMH04_03765 PF00483 Nucleotidyl transferase NMH04_03770 PF16363 GDP-mannose 4,6 dehydratase NMH04_03775 PF03407 Nucleotide-diphospho-sugar transferase NMH04_03780 PF00535 Glycosyl transferase family 2 NMH04_03785 PF03407 Nucleotide-diphospho-sugar transferase NMH04_03790 PF07690 Major Facilitator Superfamily NMH04_03795 PF00905 Penicillin binding protein transpeptidase domain NMH04_03795 PF05223 NTF2-like N-terminal transpeptidase domain NMH04_03795 PF03717 Penicillin-binding Protein dimerisation domain NMH04_03800 PF00939 Sodium:sulfate symporter transmembrane region NMH04_03815 PF00011 Hsp20/alpha crystallin family NMH04_03830 PF13520 Amino acid permease NMH04_03835 PF00535 Glycosyl transferase family 2 NMH04_03835 PF13181 Tetratricopeptide repeat NMH04_03840 PF00005 ABC transporter NMH04_03840 PF16326 ABC transporter C-terminal domain NMH04_03840 PF12848 ABC transporter NMH04_03845 PF02649 Type I GTP cyclohydrolase folE2 NMH04_03850 PF13411 MerR HTH family regulatory protein NMH04_03855 PF07690 Major Facilitator Superfamily NMH04_03860 PF00005 ABC transporter NMH04_03860 PF12848 ABC transporter NMH04_03865 PF00271 Helicase conserved C-terminal domain NMH04_03865 PF00270 DEAD/DEAH box helicase NMH04_03870 PF16884 N-terminal domain of oxidoreductase NMH04_03870 PF00107 Zinc-binding dehydrogenase NMH04_03875 PF11486 Protein of unknown function (DUF3212) NMH04_03880 PF11181 Heat induced stress protein YflT NMH04_03890 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NMH04_03890 PF00925 GTP cyclohydrolase II NMH04_03895 PF03781 Sulfatase-modifying factor enzyme 1 NMH04_03905 PF01872 RibD C-terminal domain NMH04_03905 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NMH04_03915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMH04_03915 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain NMH04_03920 PF12431 Transcriptional regulator NMH04_03920 PF08279 HTH domain NMH04_03920 PF00072 Response regulator receiver domain NMH04_03925 PF03401 Tripartite tricarboxylate transporter family receptor NMH04_03930 PF03600 Citrate transporter NMH04_03940 PF05870 Phenolic acid decarboxylase (PAD) NMH04_03945 PF10400 Virulence activator alpha C-term NMH04_03945 PF03551 Transcriptional regulator PadR-like family NMH04_03950 PF02898 Nitric oxide synthase, oxygenase domain NMH04_03960 PF00708 Acylphosphatase NMH04_03965 PF03475 3-alpha domain NMH04_03965 PF03473 MOSC domain NMH04_03970 PF11121 Protein of unknown function (DUF2639) NMH04_03980 PF00557 Metallopeptidase family M24 NMH04_03985 PF00367 phosphotransferase system, EIIB NMH04_03985 PF02378 Phosphotransferase system, EIIC NMH04_03990 PF05675 Protein of unknown function (DUF817) NMH04_04000 PF14172 Domain of unknown function (DUF4309) NMH04_04005 PF00884 Sulfatase NMH04_04010 PF00282 Pyridoxal-dependent decarboxylase conserved domain NMH04_04015 PF00672 HAMP domain NMH04_04015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMH04_04020 PF09350 Domain of unknown function (DUF1992) NMH04_04025 PF02378 Phosphotransferase system, EIIC NMH04_04025 PF00367 phosphotransferase system, EIIB NMH04_04030 PF16657 Maltogenic Amylase, C-terminal domain NMH04_04030 PF00128 Alpha amylase, catalytic domain NMH04_04035 PF00392 Bacterial regulatory proteins, gntR family NMH04_04035 PF07702 UTRA domain NMH04_04045 PF02872 5'-nucleotidase, C-terminal domain NMH04_04045 PF00149 Calcineurin-like phosphoesterase NMH04_04050 PF01965 DJ-1/PfpI family NMH04_04055 PF06569 Protein of unknown function (DUF1128) NMH04_04060 PF01235 Sodium:alanine symporter family NMH04_04065 PF01451 Low molecular weight phosphotyrosine protein phosphatase NMH04_04075 PF03631 Virulence factor BrkB NMH04_04080 PF07690 Major Facilitator Superfamily NMH04_04090 PF01699 Sodium/calcium exchanger protein NMH04_04095 PF14167 YfkD-like protein NMH04_04100 PF01709 Transcriptional regulator NMH04_04110 PF00924 Mechanosensitive ion channel NMH04_04115 PF04055 Radical SAM superfamily NMH04_04115 PF08756 YfkB-like domain NMH04_04125 PF01522 Polysaccharide deacetylase NMH04_04135 PF01544 CorA-like Mg2+ transporter protein NMH04_04145 PF00730 HhH-GPD superfamily base excision DNA repair protein NMH04_04150 PF01938 TRAM domain NMH04_04150 PF05958 tRNA (Uracil-5-)-methyltransferase NMH04_04180 PF13411 MerR HTH family regulatory protein NMH04_04180 PF07739 TipAS antibiotic-recognition domain NMH04_04185 PF07690 Major Facilitator Superfamily NMH04_04235 PF00893 Small Multidrug Resistance protein NMH04_04240 PF00893 Small Multidrug Resistance protein NMH04_04245 PF17934 Tetracyclin repressor-like, C-terminal domain NMH04_04245 PF00440 Bacterial regulatory proteins, tetR family NMH04_04260 PF00657 GDSL-like Lipase/Acylhydrolase NMH04_04265 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMH04_04270 PF02805 Metal binding domain of Ada NMH04_04270 PF12833 Helix-turn-helix domain NMH04_04275 PF01497 Periplasmic binding protein NMH04_04280 PF00664 ABC transporter transmembrane region NMH04_04280 PF00005 ABC transporter NMH04_04285 PF02694 Uncharacterised BCR, YnfA/UPF0060 family NMH04_04290 PF04542 Sigma-70 region 2 NMH04_04290 PF04545 Sigma-70, region 4 NMH04_04305 PF08240 Alcohol dehydrogenase GroES-like domain NMH04_04305 PF00107 Zinc-binding dehydrogenase NMH04_04310 PF12867 DinB superfamily NMH04_04320 PF01047 MarR family NMH04_04325 PF03706 Lysylphosphatidylglycerol synthase TM region NMH04_04325 PF09924 Uncharacterised conserved protein (DUF2156) NMH04_04340 PF18801 response regulator aspartate phosphatase H, N terminal NMH04_04345 PF00881 Nitroreductase family NMH04_04360 PF08338 Domain of unknown function (DUF1731) NMH04_04360 PF01370 NAD dependent epimerase/dehydratase family NMH04_04365 PF02631 RecX family NMH04_04370 PF08838 Protein of unknown function (DUF1811) NMH04_04380 PF08176 Small acid-soluble spore protein K family NMH04_04385 PF14043 WVELL protein NMH04_04390 PF00535 Glycosyl transferase family 2 NMH04_04395 PF09586 Bacterial membrane protein YfhO NMH04_04400 PF01494 FAD binding domain NMH04_04415 PF00190 Cupin NMH04_04420 PF12841 YvrJ protein family NMH04_04425 PF04545 Sigma-70, region 4 NMH04_04470 PF04307 LexA-binding, inner membrane-associated putative hydrolase NMH04_04475 PF00730 HhH-GPD superfamily base excision DNA repair protein NMH04_04475 PF14815 NUDIX domain NMH04_04500 PF04167 Protein of unknown function (DUF402) NMH04_04505 PF00664 ABC transporter transmembrane region NMH04_04505 PF00005 ABC transporter NMH04_04510 PF00005 ABC transporter NMH04_04510 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NMH04_04515 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NMH04_04515 PF00005 ABC transporter NMH04_04520 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NMH04_04525 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_04530 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_04530 PF12911 N-terminal TM domain of oligopeptide transport permease C NMH04_04535 PF06081 Aromatic acid exporter family member 1 NMH04_04540 PF00202 Aminotransferase class-III NMH04_04545 PF00578 AhpC/TSA family NMH04_04550 PF01475 Ferric uptake regulator family NMH04_04555 PF11023 Zinc-ribbon containing domain NMH04_04560 PF14540 Nucleotidyltransferase-like NMH04_04560 PF18576 Helix-turn-helix domain NMH04_04700 PF00884 Sulfatase NMH04_04705 PF10502 Signal peptidase, peptidase S26 NMH04_04710 PF01053 Cys/Met metabolism PLP-dependent enzyme NMH04_04715 PF13040 Fur-regulated basic protein B NMH04_04725 PF00005 ABC transporter NMH04_04760 PF08331 Domain of unknown function (DUF1730) NMH04_04765 PF12671 Putative amidase domain NMH04_04770 PF00588 SpoU rRNA Methylase family NMH04_04775 PF06798 PrkA serine protein kinase C-terminal domain NMH04_04775 PF08298 PrkA AAA domain NMH04_04780 PF04285 Protein of unknown function (DUF444) NMH04_04790 PF07690 Major Facilitator Superfamily NMH04_04795 PF03358 NADPH-dependent FMN reductase NMH04_04805 PF00313 'Cold-shock' DNA-binding domain NMH04_04810 PF07694 5TMR of 5TMR-LYT NMH04_04810 PF00990 Diguanylate cyclase, GGDEF domain NMH04_04825 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) NMH04_04835 PF07875 Coat F domain NMH04_04840 PF13426 PAS domain NMH04_04840 PF00989 PAS fold NMH04_04840 PF00512 His Kinase A (phospho-acceptor) domain NMH04_04840 PF13188 PAS domain NMH04_04840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMH04_04845 PF02872 5'-nucleotidase, C-terminal domain NMH04_04845 PF00746 LPXTG cell wall anchor motif NMH04_04845 PF00149 Calcineurin-like phosphoesterase NMH04_04845 PF00565 Staphylococcal nuclease homologue NMH04_04850 PF04203 Sortase domain NMH04_04855 PF01479 S4 domain NMH04_04855 PF00849 RNA pseudouridylate synthase NMH04_04865 PF13419 Haloacid dehalogenase-like hydrolase NMH04_04870 PF00583 Acetyltransferase (GNAT) family NMH04_04870 PF00795 Carbon-nitrogen hydrolase NMH04_04890 PF17853 GGDEF-like domain NMH04_04890 PF13556 PucR C-terminal helix-turn-helix domain NMH04_04890 PF05651 Putative sugar diacid recognition NMH04_04895 PF00202 Aminotransferase class-III NMH04_04900 PF04309 Glycerol-3-phosphate responsive antiterminator NMH04_04905 PF00230 Major intrinsic protein NMH04_04910 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NMH04_04910 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NMH04_04915 PF01266 FAD dependent oxidoreductase NMH04_04915 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NMH04_04920 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NMH04_04920 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NMH04_04920 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NMH04_04920 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NMH04_04925 PF13185 GAF domain NMH04_04925 PF07730 Histidine kinase NMH04_04930 PF00196 Bacterial regulatory proteins, luxR family NMH04_04930 PF00072 Response regulator receiver domain NMH04_04935 PF14148 YhdB-like protein NMH04_04940 PF13028 Protein of unknown function (DUF3889) NMH04_04945 PF06628 Catalase-related immune-responsive NMH04_04945 PF00199 Catalase NMH04_04950 PF02082 Transcriptional regulator NMH04_04955 PF00970 Oxidoreductase FAD-binding domain NMH04_04955 PF00175 Oxidoreductase NAD-binding domain NMH04_04955 PF00042 Globin NMH04_04960 PF04293 SpoVR like protein NMH04_04965 PF00245 Alkaline phosphatase NMH04_04970 PF00877 NlpC/P60 family NMH04_04970 PF01476 LysM domain NMH04_04975 PF17453 Sigma-M inhibitor NMH04_04980 PF13791 Sigma factor regulator C-terminal NMH04_04980 PF13800 Sigma factor regulator N-terminal NMH04_04985 PF08281 Sigma-70, region 4 NMH04_04985 PF04542 Sigma-70 region 2 NMH04_04990 PF01553 Acyltransferase NMH04_04995 PF01595 Cyclin M transmembrane N-terminal domain NMH04_04995 PF00571 CBS domain NMH04_04995 PF03471 Transporter associated domain NMH04_05000 PF13411 MerR HTH family regulatory protein NMH04_05005 PF01595 Cyclin M transmembrane N-terminal domain NMH04_05005 PF03471 Transporter associated domain NMH04_05005 PF00571 CBS domain NMH04_05015 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NMH04_05020 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NMH04_05025 PF03009 Glycerophosphoryl diester phosphodiesterase family NMH04_05030 PF17444 Uncharacterized YhdX-like NMH04_05035 PF00924 Mechanosensitive ion channel NMH04_05040 PF02146 Sir2 family NMH04_05045 PF01522 Polysaccharide deacetylase NMH04_05050 PF01063 Amino-transferase class IV NMH04_05055 PF00582 Universal stress protein family NMH04_05060 PF00005 ABC transporter NMH04_05060 PF00664 ABC transporter transmembrane region NMH04_05065 PF00664 ABC transporter transmembrane region NMH04_05065 PF00005 ABC transporter NMH04_05070 PF13460 NAD(P)H-binding NMH04_05075 PF00269 Small, acid-soluble spore proteins, alpha/beta type NMH04_05080 PF03459 TOBE domain NMH04_05080 PF17912 MalK OB fold domain NMH04_05080 PF00005 ABC transporter NMH04_05085 PF13556 PucR C-terminal helix-turn-helix domain NMH04_05090 PF17277 Family of unknown function (DUF5342) NMH04_05095 PF14398 YheC/D like ATP-grasp NMH04_05100 PF14398 YheC/D like ATP-grasp NMH04_05105 PF04286 Protein of unknown function (DUF445) NMH04_05110 PF06133 Control of competence regulator ComK, YlbF/YmcA NMH04_05120 PF04055 Radical SAM superfamily NMH04_05125 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) NMH04_05130 PF00999 Sodium/hydrogen exchanger family NMH04_05135 PF02080 TrkA-C domain NMH04_05145 PF00378 Enoyl-CoA hydratase/isomerase NMH04_05150 PF14120 YhzD-like protein NMH04_05155 PF00149 Calcineurin-like phosphoesterase NMH04_05160 PF13514 AAA domain NMH04_05165 PF01966 HD domain NMH04_05170 PF14147 Sporulation protein YhaL NMH04_05180 PF09680 Family of unknown function NMH04_05185 PF09680 Family of unknown function NMH04_05195 PF11667 Putative zincin peptidase NMH04_05200 PF08963 Protein of unknown function (DUF1878) NMH04_05205 PF01047 MarR family NMH04_05210 PF12732 YtxH-like protein NMH04_05220 PF17099 Tryptophan transporter TrpP NMH04_05225 PF00266 Aminotransferase class-V NMH04_05230 PF01230 HIT domain NMH04_05235 PF00005 ABC transporter NMH04_05240 PF05975 Bacterial ABC transporter protein EcsB NMH04_05245 PF12787 EcsC protein family NMH04_05250 PF01546 Peptidase family M20/M25/M40 NMH04_05250 PF07687 Peptidase dimerisation domain NMH04_05260 PF03992 Antibiotic biosynthesis monooxygenase NMH04_05265 PF00905 Penicillin binding protein transpeptidase domain NMH04_05265 PF00912 Transglycosylase NMH04_05270 PF01208 Uroporphyrinogen decarboxylase (URO-D) NMH04_05275 PF00762 Ferrochelatase NMH04_05280 PF01593 Flavin containing amine oxidoreductase NMH04_05285 PF17932 Tetracyclin repressor-like, C-terminal domain NMH04_05285 PF00440 Bacterial regulatory proteins, tetR family NMH04_05295 PF05343 M42 glutamyl aminopeptidase NMH04_05300 PF00375 Sodium:dicarboxylate symporter family NMH04_05305 PF14149 YhfH-like protein NMH04_05310 PF12706 Beta-lactamase superfamily domain NMH04_05315 PF03099 Biotin/lipoate A/B protein ligase family NMH04_05315 PF10437 Bacterial lipoate protein ligase C-terminus NMH04_05320 PF13193 AMP-binding enzyme C-terminal domain NMH04_05320 PF00501 AMP-binding enzyme NMH04_05330 PF01435 Peptidase family M48 NMH04_05330 PF16491 CAAX prenyl protease N-terminal, five membrane helices NMH04_05335 PF05922 Peptidase inhibitor I9 NMH04_05335 PF00082 Subtilase family NMH04_05340 PF00300 Histidine phosphatase superfamily (branch 1) NMH04_05345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMH04_05350 PF00355 Rieske [2Fe-2S] domain NMH04_05350 PF01266 FAD dependent oxidoreductase NMH04_05360 PF08858 IDEAL domain NMH04_05365 PF06338 ComK protein NMH04_05370 PF14031 Putative serine dehydratase domain NMH04_05370 PF01168 Alanine racemase, N-terminal domain NMH04_05380 PF00155 Aminotransferase class I and II NMH04_05380 PF00392 Bacterial regulatory proteins, gntR family NMH04_05385 PF07690 Major Facilitator Superfamily NMH04_05390 PF01337 Barstar (barnase inhibitor) NMH04_05395 PF01032 FecCD transport family NMH04_05400 PF01032 FecCD transport family NMH04_05405 PF00005 ABC transporter NMH04_05410 PF01497 Periplasmic binding protein NMH04_05415 PF03816 Cell envelope-related transcriptional attenuator domain NMH04_05430 PF09335 SNARE associated Golgi protein NMH04_05435 PF10502 Signal peptidase, peptidase S26 NMH04_05440 PF05145 Transition state regulatory protein AbrB NMH04_05455 PF07681 DoxX NMH04_05460 PF02915 Rubrerythrin NMH04_05465 PF12705 PD-(D/E)XK nuclease superfamily NMH04_05470 PF13361 UvrD-like helicase C-terminal domain NMH04_05470 PF12705 PD-(D/E)XK nuclease superfamily NMH04_05470 PF00580 UvrD/REP helicase N-terminal domain NMH04_05475 PF00149 Calcineurin-like phosphoesterase NMH04_05475 PF12320 Type 5 capsule protein repressor C-terminal domain NMH04_05480 PF13476 AAA domain NMH04_05490 PF10676 Spore germination protein gerPA/gerPF NMH04_05495 PF10970 Spore germination protein GerPE NMH04_05505 PF10737 Spore germination protein GerPC NMH04_05510 PF10803 Spore germination GerPB NMH04_05515 PF10676 Spore germination protein gerPA/gerPF NMH04_05525 PF08757 CotH kinase protein NMH04_05535 PF01557 Fumarylacetoacetate (FAA) hydrolase family NMH04_05540 PF07457 Protein of unknown function (DUF1516) NMH04_05545 PF10949 Protein of unknown function (DUF2777) NMH04_05550 PF00733 Asparagine synthase NMH04_05550 PF13537 Glutamine amidotransferase domain NMH04_05555 PF01593 Flavin containing amine oxidoreductase NMH04_05560 PF01593 Flavin containing amine oxidoreductase NMH04_05570 PF01554 MatE NMH04_05575 PF12833 Helix-turn-helix domain NMH04_05575 PF02311 AraC-like ligand binding domain NMH04_05595 PF00202 Aminotransferase class-III NMH04_05600 PF00282 Pyridoxal-dependent decarboxylase conserved domain NMH04_05605 PF06276 Ferric iron reductase FhuF-like transporter NMH04_05605 PF04183 IucA / IucC family NMH04_05615 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) NMH04_05620 PF04183 IucA / IucC family NMH04_05620 PF06276 Ferric iron reductase FhuF-like transporter NMH04_05640 PF02607 B12 binding domain NMH04_05640 PF02965 Vitamin B12 dependent methionine synthase, activation domain NMH04_05640 PF00809 Pterin binding enzyme NMH04_05640 PF02574 Homocysteine S-methyltransferase NMH04_05640 PF02310 B12 binding domain NMH04_05645 PF02574 Homocysteine S-methyltransferase NMH04_05645 PF02219 Methylenetetrahydrofolate reductase NMH04_05650 PF04461 Protein of unknown function (DUF520) NMH04_05655 PF17783 CvfB-like winged helix domain NMH04_05655 PF13509 S1 domain NMH04_05660 PF02608 ABC transporter substrate-binding protein PnrA-like NMH04_05665 PF02743 Cache domain NMH04_05665 PF00672 HAMP domain NMH04_05665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMH04_05670 PF02645 Uncharacterised protein, DegV family COG1307 NMH04_05675 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 NMH04_05675 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NMH04_05680 PF12690 Intracellular proteinase inhibitor NMH04_05685 PF12758 Protein of unknown function (DUF3813) NMH04_05700 PF00326 Prolyl oligopeptidase family NMH04_05705 PF01883 Iron-sulfur cluster assembly protein NMH04_05715 PF01118 Semialdehyde dehydrogenase, NAD binding domain NMH04_05715 PF02774 Semialdehyde dehydrogenase, dimerisation domain NMH04_05720 PF01960 ArgJ family NMH04_05725 PF00696 Amino acid kinase family NMH04_05730 PF00202 Aminotransferase class-III NMH04_05735 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NMH04_05735 PF00117 Glutamine amidotransferase class-I NMH04_05740 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NMH04_05740 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NMH04_05745 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NMH04_05745 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NMH04_05750 PF14168 YjzC-like protein NMH04_05755 PF07690 Major Facilitator Superfamily NMH04_05760 PF11151 Protein of unknown function (DUF2929) NMH04_05775 PF02608 ABC transporter substrate-binding protein PnrA-like NMH04_05780 PF10815 ComZ NMH04_05790 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NMH04_05790 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NMH04_05795 PF00109 Beta-ketoacyl synthase, N-terminal domain NMH04_05795 PF02801 Beta-ketoacyl synthase, C-terminal domain NMH04_05800 PF10026 Predicted Zn-dependent protease (DUF2268) NMH04_05805 PF00005 ABC transporter NMH04_05805 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NMH04_05810 PF00005 ABC transporter NMH04_05810 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NMH04_05815 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NMH04_05820 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_05825 PF12911 N-terminal TM domain of oligopeptide transport permease C NMH04_05825 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_05830 PF12227 Protein of unknown function (DUF3603) NMH04_05835 PF00579 tRNA synthetases class I (W and Y) NMH04_05840 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NMH04_05845 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_05850 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_05850 PF12911 N-terminal TM domain of oligopeptide transport permease C NMH04_05855 PF00005 ABC transporter NMH04_05855 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NMH04_05860 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NMH04_05860 PF00005 ABC transporter NMH04_05870 PF13508 Acetyltransferase (GNAT) domain NMH04_05875 PF03960 ArsC family NMH04_05880 PF03741 Integral membrane protein TerC family NMH04_05885 PF05389 Negative regulator of genetic competence (MecA) NMH04_05890 PF13091 PLD-like domain NMH04_05890 PF13396 Phospholipase_D-nuclease N-terminal NMH04_05900 PF01432 Peptidase family M3 NMH04_05900 PF08439 Oligopeptidase F NMH04_05915 PF01152 Bacterial-like globin NMH04_05920 PF01464 Transglycosylase SLT domain NMH04_05925 PF01928 CYTH domain NMH04_05935 PF04607 Region found in RelA / SpoT proteins NMH04_05940 PF01513 ATP-NAD kinase NMH04_05945 PF00849 RNA pseudouridylate synthase NMH04_05950 PF00149 Calcineurin-like phosphoesterase NMH04_05955 PF02254 TrkA-N domain NMH04_05955 PF00999 Sodium/hydrogen exchanger family NMH04_05955 PF02080 TrkA-C domain NMH04_05960 PF03070 TENA/THI-4/PQQC family NMH04_05965 PF02581 Thiamine monophosphate synthase NMH04_05970 PF01266 FAD dependent oxidoreductase NMH04_05975 PF02597 ThiS family NMH04_05980 PF05690 Thiazole biosynthesis protein ThiG NMH04_05985 PF00899 ThiF family NMH04_05990 PF08543 Phosphomethylpyrimidine kinase NMH04_06000 PF14153 Spore coat protein CotO NMH04_06005 PF10612 Spore coat protein Z NMH04_06010 PF10612 Spore coat protein Z NMH04_06015 PF07552 Spore Coat Protein X and V domain NMH04_06025 PF07552 Spore Coat Protein X and V domain NMH04_06030 PF07098 Protein of unknown function (DUF1360) NMH04_06045 PF14069 Stage VI sporulation protein F NMH04_06050 PF00580 UvrD/REP helicase N-terminal domain NMH04_06050 PF13361 UvrD-like helicase C-terminal domain NMH04_06060 PF13673 Acetyltransferase (GNAT) domain NMH04_06070 PF00756 Putative esterase NMH04_06075 PF01053 Cys/Met metabolism PLP-dependent enzyme NMH04_06080 PF01053 Cys/Met metabolism PLP-dependent enzyme NMH04_06150 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NMH04_06165 PF06713 Bacterial PH domain NMH04_06175 PF18801 response regulator aspartate phosphatase H, N terminal NMH04_06175 PF13176 Tetratricopeptide repeat NMH04_06205 PF00302 Chloramphenicol acetyltransferase NMH04_06230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMH04_06230 PF03466 LysR substrate binding domain NMH04_06235 PF01177 Asp/Glu/Hydantoin racemase NMH04_06250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMH04_06250 PF03466 LysR substrate binding domain NMH04_06255 PF07690 Major Facilitator Superfamily NMH04_06260 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NMH04_06260 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMH04_06290 PF00842 Alanine racemase, C-terminal domain NMH04_06290 PF01168 Alanine racemase, N-terminal domain NMH04_06295 PF08240 Alcohol dehydrogenase GroES-like domain NMH04_06295 PF00107 Zinc-binding dehydrogenase NMH04_06315 PF00700 Bacterial flagellin C-terminal helical region NMH04_06315 PF00669 Bacterial flagellin N-terminal helical region NMH04_06320 PF00700 Bacterial flagellin C-terminal helical region NMH04_06320 PF00669 Bacterial flagellin N-terminal helical region NMH04_06325 PF00700 Bacterial flagellin C-terminal helical region NMH04_06325 PF00669 Bacterial flagellin N-terminal helical region NMH04_06330 PF00700 Bacterial flagellin C-terminal helical region NMH04_06330 PF00669 Bacterial flagellin N-terminal helical region NMH04_06335 PF01494 FAD binding domain NMH04_06350 PF05908 Poly-gamma-glutamate hydrolase NMH04_06355 PF06114 IrrE N-terminal-like domain NMH04_06360 PF01510 N-acetylmuramoyl-L-alanine amidase NMH04_06360 PF01476 LysM domain NMH04_06360 PF01471 Putative peptidoglycan binding domain NMH04_06365 PF14185 Antitoxin SpoIISB, type II toxin-antitoxin system NMH04_06370 PF14171 Toxin SpoIISA, type II toxin-antitoxin system NMH04_06375 PF01384 Phosphate transporter family NMH04_06380 PF01865 Protein of unknown function DUF47 NMH04_06400 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_06405 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_06410 PF00005 ABC transporter NMH04_06410 PF17850 CysA C-terminal regulatory domain NMH04_06410 PF12857 TOBE-like domain NMH04_06420 PF03611 PTS system sugar-specific permease component NMH04_06435 PF08240 Alcohol dehydrogenase GroES-like domain NMH04_06435 PF00107 Zinc-binding dehydrogenase NMH04_06440 PF00676 Dehydrogenase E1 component NMH04_06445 PF00364 Biotin-requiring enzyme NMH04_06445 PF02779 Transketolase, pyrimidine binding domain NMH04_06445 PF02780 Transketolase, C-terminal domain NMH04_06450 PF00364 Biotin-requiring enzyme NMH04_06450 PF02817 e3 binding domain NMH04_06450 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NMH04_06455 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMH04_06455 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NMH04_06470 PF04198 Putative sugar-binding domain NMH04_06480 PF13520 Amino acid permease NMH04_06485 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NMH04_06495 PF13180 PDZ domain NMH04_06500 PF03807 NADP oxidoreductase coenzyme F420-dependent NMH04_06500 PF14748 Pyrroline-5-carboxylate reductase dimerisation NMH04_06505 PF04951 D-aminopeptidase NMH04_06510 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_06515 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_06515 PF12911 N-terminal TM domain of oligopeptide transport permease C NMH04_06520 PF00005 ABC transporter NMH04_06520 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NMH04_06525 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NMH04_06530 PF02016 LD-carboxypeptidase N-terminal domain NMH04_06530 PF17676 LD-carboxypeptidase C-terminal domain NMH04_06535 PF13378 Enolase C-terminal domain-like NMH04_06535 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NMH04_06540 PF00877 NlpC/P60 family NMH04_06545 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NMH04_06545 PF00005 ABC transporter NMH04_06555 PF03061 Thioesterase superfamily NMH04_06560 PF03551 Transcriptional regulator PadR-like family NMH04_06575 PF13302 Acetyltransferase (GNAT) domain NMH04_06580 PF02805 Metal binding domain of Ada NMH04_06580 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NMH04_06580 PF12833 Helix-turn-helix domain NMH04_06580 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NMH04_06585 PF00893 Small Multidrug Resistance protein NMH04_06590 PF00893 Small Multidrug Resistance protein NMH04_06600 PF01842 ACT domain NMH04_06600 PF00551 Formyl transferase NMH04_06605 PF00696 Amino acid kinase family NMH04_06605 PF01472 PUA domain NMH04_06610 PF00171 Aldehyde dehydrogenase family NMH04_06615 PF18801 response regulator aspartate phosphatase H, N terminal NMH04_06625 PF02566 OsmC-like protein NMH04_06630 PF01047 MarR family NMH04_06635 PF02566 OsmC-like protein NMH04_06640 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NMH04_06645 PF08267 Cobalamin-independent synthase, N-terminal domain NMH04_06645 PF01717 Cobalamin-independent synthase, Catalytic domain NMH04_06650 PF00082 Subtilase family NMH04_06665 PF00486 Transcriptional regulatory protein, C terminal NMH04_06665 PF00072 Response regulator receiver domain NMH04_06670 PF00672 HAMP domain NMH04_06670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMH04_06670 PF00512 His Kinase A (phospho-acceptor) domain NMH04_06675 PF03413 Peptidase propeptide and YPEB domain NMH04_06680 PF03413 Peptidase propeptide and YPEB domain NMH04_06690 PF00571 CBS domain NMH04_06690 PF01769 Divalent cation transporter NMH04_06690 PF03448 MgtE intracellular N domain NMH04_06700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMH04_06700 PF03466 LysR substrate binding domain NMH04_06710 PF13411 MerR HTH family regulatory protein NMH04_06725 PF01047 MarR family NMH04_06730 PF00990 Diguanylate cyclase, GGDEF domain NMH04_06730 PF03707 Bacterial signalling protein N terminal repeat NMH04_06730 PF00563 EAL domain NMH04_06735 PF09335 SNARE associated Golgi protein NMH04_06745 PF04542 Sigma-70 region 2 NMH04_06750 PF12791 Anti-sigma factor N-terminus NMH04_06755 PF00269 Small, acid-soluble spore proteins, alpha/beta type NMH04_06760 PF08876 Domain of unknown function (DUF1836) NMH04_06765 PF01435 Peptidase family M48 NMH04_06770 PF02386 Cation transport protein NMH04_06775 PF04239 Protein of unknown function (DUF421) NMH04_06790 PF01757 Acyltransferase family NMH04_06795 PF13426 PAS domain NMH04_06795 PF13188 PAS domain NMH04_06795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMH04_06795 PF00512 His Kinase A (phospho-acceptor) domain NMH04_06795 PF00989 PAS fold NMH04_06800 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NMH04_06800 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NMH04_06805 PF01008 Initiation factor 2 subunit family NMH04_06810 PF01636 Phosphotransferase enzyme family NMH04_06815 PF00155 Aminotransferase class I and II NMH04_06820 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain NMH04_06820 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain NMH04_06830 PF00596 Class II Aldolase and Adducin N-terminal domain NMH04_06835 PF03079 ARD/ARD' family NMH04_06840 PF09388 Spo0E like sporulation regulatory protein NMH04_06845 PF00512 His Kinase A (phospho-acceptor) domain NMH04_06845 PF02743 Cache domain NMH04_06845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMH04_06850 PF01047 MarR family NMH04_06855 PF13677 Membrane MotB of proton-channel complex MotA/MotB NMH04_06855 PF00691 OmpA family NMH04_06860 PF01618 MotA/TolQ/ExbB proton channel family NMH04_06865 PF00004 ATPase family associated with various cellular activities (AAA) NMH04_06865 PF17871 AAA lid domain NMH04_06865 PF10431 C-terminal, D2-small domain, of ClpB protein NMH04_06865 PF07724 AAA domain (Cdc48 subfamily) NMH04_06875 PF06508 Queuosine biosynthesis protein QueC NMH04_06880 PF01242 6-pyruvoyl tetrahydropterin synthase NMH04_06885 PF04055 Radical SAM superfamily NMH04_06890 PF14489 QueF-like protein NMH04_06900 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) NMH04_06910 PF07486 Cell Wall Hydrolase NMH04_06915 PF01943 Polysaccharide biosynthesis protein NMH04_06920 PF00578 AhpC/TSA family NMH04_06930 PF01321 Creatinase/Prolidase N-terminal domain NMH04_06930 PF00557 Metallopeptidase family M24 NMH04_06935 PF00356 Bacterial regulatory proteins, lacI family NMH04_06935 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NMH04_06940 PF03123 CAT RNA binding domain NMH04_06940 PF00874 PRD domain NMH04_06945 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NMH04_06945 PF00367 phosphotransferase system, EIIB NMH04_06945 PF02378 Phosphotransferase system, EIIC NMH04_06950 PF00381 PTS HPr component phosphorylation site NMH04_06955 PF02896 PEP-utilising enzyme, TIM barrel domain NMH04_06955 PF00391 PEP-utilising enzyme, mobile domain NMH04_06955 PF05524 PEP-utilising enzyme, N-terminal NMH04_06960 PF11132 Transcriptional regulator protein (SplA) NMH04_06970 PF00672 HAMP domain NMH04_06970 PF02743 Cache domain NMH04_06970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMH04_06975 PF00106 short chain dehydrogenase NMH04_06980 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NMH04_06980 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NMH04_06985 PF00188 Cysteine-rich secretory protein family NMH04_06990 PF03717 Penicillin-binding Protein dimerisation domain NMH04_06990 PF00905 Penicillin binding protein transpeptidase domain NMH04_06995 PF08447 PAS fold NMH04_06995 PF00989 PAS fold NMH04_06995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMH04_06995 PF00512 His Kinase A (phospho-acceptor) domain NMH04_07000 PF00155 Aminotransferase class I and II NMH04_07005 PF01545 Cation efflux family NMH04_07005 PF16916 Dimerisation domain of Zinc Transporter NMH04_07015 PF06271 RDD family NMH04_07025 PF01584 CheW-like domain NMH04_07025 PF00072 Response regulator receiver domain NMH04_07030 PF14177 YkyB-like protein NMH04_07045 PF07690 Major Facilitator Superfamily NMH04_07050 PF03734 L,D-transpeptidase catalytic domain NMH04_07050 PF01476 LysM domain NMH04_07055 PF00149 Calcineurin-like phosphoesterase NMH04_07055 PF10518 TAT (twin-arginine translocation) pathway signal sequence NMH04_07065 PF00563 EAL domain NMH04_07065 PF10388 EAL-domain associated signalling protein domain NMH04_07070 PF05067 Manganese containing catalase NMH04_07075 PF08796 Protein of unknown function (DUF1797) NMH04_07080 PF04308 Ribonuclease H-like NMH04_07085 PF14156 Antirepressor AbbA NMH04_07095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMH04_07095 PF03466 LysR substrate binding domain NMH04_07105 PF00258 Flavodoxin NMH04_07115 PF00258 Flavodoxin NMH04_07120 PF14602 Hexapeptide repeat of succinyl-transferase NMH04_07120 PF00132 Bacterial transferase hexapeptide (six repeats) NMH04_07120 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal NMH04_07125 PF07687 Peptidase dimerisation domain NMH04_07125 PF01546 Peptidase family M20/M25/M40 NMH04_07130 PF03698 Uncharacterised protein family (UPF0180) NMH04_07135 PF00924 Mechanosensitive ion channel NMH04_07140 PF10417 C-terminal domain of 1-Cys peroxiredoxin NMH04_07140 PF00578 AhpC/TSA family NMH04_07145 PF00578 AhpC/TSA family NMH04_07160 PF12804 MobA-like NTP transferase domain NMH04_07165 PF00899 ThiF family NMH04_07170 PF00994 Probable molybdopterin binding domain NMH04_07170 PF03454 MoeA C-terminal region (domain IV) NMH04_07170 PF03453 MoeA N-terminal region (domain I and II) NMH04_07175 PF03205 Molybdopterin guanine dinucleotide synthesis protein B NMH04_07180 PF02391 MoaE protein NMH04_07185 PF02597 ThiS family NMH04_07200 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NMH04_07205 PF00005 ABC transporter NMH04_07210 PF12704 MacB-like periplasmic core domain NMH04_07210 PF02687 FtsX-like permease family NMH04_07215 PF00455 DeoR C terminal sensor domain NMH04_07215 PF08220 DeoR-like helix-turn-helix domain NMH04_07220 PF00294 pfkB family carbohydrate kinase NMH04_07225 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NMH04_07225 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NMH04_07230 PF10502 Signal peptidase, peptidase S26 NMH04_07240 PF00005 ABC transporter NMH04_07240 PF12848 ABC transporter NMH04_07245 PF02073 Thermophilic metalloprotease (M29) NMH04_07250 PF17447 Uncharacterized YkpC-like NMH04_07260 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin NMH04_07260 PF18277 AbrB C-terminal domain NMH04_07265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMH04_07265 PF00512 His Kinase A (phospho-acceptor) domain NMH04_07265 PF00989 PAS fold NMH04_07270 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like NMH04_07275 PF02080 TrkA-C domain NMH04_07275 PF02254 TrkA-N domain NMH04_07280 PF13382 Adenine deaminase C-terminal domain NMH04_07280 PF01979 Amidohydrolase family NMH04_07285 PF00753 Metallo-beta-lactamase superfamily NMH04_07285 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain NMH04_07285 PF17770 Ribonuclease J C-terminal domain NMH04_07290 PF07288 Protein of unknown function (DUF1447) NMH04_07300 PF01327 Polypeptide deformylase NMH04_07315 PF00676 Dehydrogenase E1 component NMH04_07320 PF02779 Transketolase, pyrimidine binding domain NMH04_07320 PF02780 Transketolase, C-terminal domain NMH04_07325 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NMH04_07325 PF00364 Biotin-requiring enzyme NMH04_07325 PF02817 e3 binding domain NMH04_07330 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMH04_07330 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NMH04_07340 PF13790 SR1 protein NMH04_07345 PF01276 Orn/Lys/Arg decarboxylase, major domain NMH04_07345 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain NMH04_07350 PF05256 Uncharacterised protein family (UPF0223) NMH04_07355 PF06335 Protein of unknown function (DUF1054) NMH04_07365 PF00459 Inositol monophosphatase family NMH04_07380 PF08281 Sigma-70, region 4 NMH04_07380 PF04542 Sigma-70 region 2 NMH04_07385 PF13490 Putative zinc-finger NMH04_07400 PF00679 Elongation factor G C-terminus NMH04_07400 PF14492 Elongation Factor G, domain II NMH04_07400 PF00009 Elongation factor Tu GTP binding domain NMH04_07400 PF03144 Elongation factor Tu domain 2 NMH04_07405 PF14036 YlaH-like protein NMH04_07410 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) NMH04_07415 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) NMH04_07420 PF02562 PhoH-like protein NMH04_07420 PF13638 PIN domain NMH04_07430 PF04960 Glutaminase NMH04_07435 PF07408 Protein of unknown function (DUF1507) NMH04_07440 PF01098 Cell cycle protein NMH04_07445 PF02436 Conserved carboxylase domain NMH04_07445 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NMH04_07445 PF02785 Biotin carboxylase C-terminal domain NMH04_07445 PF00682 HMGL-like NMH04_07445 PF00289 Biotin carboxylase, N-terminal domain NMH04_07445 PF00364 Biotin-requiring enzyme NMH04_07450 PF00875 DNA photolyase NMH04_07450 PF03441 FAD binding domain of DNA photolyase NMH04_07455 PF02628 Cytochrome oxidase assembly protein NMH04_07460 PF01040 UbiA prenyltransferase family NMH04_07465 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NMH04_07465 PF02790 Cytochrome C oxidase subunit II, transmembrane domain NMH04_07465 PF00034 Cytochrome c NMH04_07470 PF00115 Cytochrome C and Quinol oxidase polypeptide I NMH04_07475 PF00510 Cytochrome c oxidase subunit III NMH04_07480 PF03626 Prokaryotic Cytochrome C oxidase subunit IV NMH04_07485 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) NMH04_07490 PF08868 YugN-like family NMH04_07495 PF00571 CBS domain NMH04_07500 PF00188 Cysteine-rich secretory protein family NMH04_07500 PF14504 CAP-associated N-terminal NMH04_07505 PF14071 Putative coat protein NMH04_07510 PF14003 YlbE-like protein NMH04_07520 PF06133 Control of competence regulator ComK, YlbF/YmcA NMH04_07525 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) NMH04_07535 PF01467 Cytidylyltransferase-like NMH04_07540 PF07670 Nucleoside recognition NMH04_07545 PF01734 Patatin-like phospholipase NMH04_07550 PF05362 Lon protease (S16) C-terminal proteolytic domain NMH04_07550 PF13180 PDZ domain NMH04_07555 PF05636 HIGH Nucleotidyl Transferase NMH04_07560 PF02620 Large ribosomal RNA subunit accumulation protein YceD NMH04_07565 PF01783 Ribosomal L32p protein family NMH04_07575 PF00583 Acetyltransferase (GNAT) family NMH04_07580 PF02558 Ketopantoate reductase PanE/ApbA NMH04_07580 PF08546 Ketopantoate reductase PanE/ApbA C terminal NMH04_07585 PF10079 Bacillithiol biosynthesis BshC NMH04_07590 PF02381 MraZ protein, putative antitoxin-like NMH04_07595 PF01795 MraW methylase family NMH04_07605 PF03793 PASTA domain NMH04_07605 PF03717 Penicillin-binding Protein dimerisation domain NMH04_07605 PF00905 Penicillin binding protein transpeptidase domain NMH04_07610 PF03793 PASTA domain NMH04_07610 PF03717 Penicillin-binding Protein dimerisation domain NMH04_07610 PF00905 Penicillin binding protein transpeptidase domain NMH04_07615 PF01225 Mur ligase family, catalytic domain NMH04_07615 PF02875 Mur ligase family, glutamate ligase domain NMH04_07615 PF08245 Mur ligase middle domain NMH04_07620 PF00953 Glycosyl transferase family 4 NMH04_07620 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 NMH04_07625 PF02875 Mur ligase family, glutamate ligase domain NMH04_07625 PF08245 Mur ligase middle domain NMH04_07630 PF01098 Cell cycle protein NMH04_07635 PF04101 Glycosyltransferase family 28 C-terminal domain NMH04_07635 PF03033 Glycosyltransferase family 28 N-terminal domain NMH04_07640 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NMH04_07640 PF01565 FAD binding domain NMH04_07645 PF08478 POTRA domain, FtsQ-type NMH04_07650 PF05949 Bacterial protein of unknown function (DUF881) NMH04_07655 PF05949 Bacterial protein of unknown function (DUF881) NMH04_07660 PF06947 Protein of unknown function (DUF1290) NMH04_07665 PF02491 SHS2 domain inserted in FTSA NMH04_07670 PF00091 Tubulin/FtsZ family, GTPase domain NMH04_07670 PF12327 FtsZ family, C-terminal domain NMH04_07675 PF05922 Peptidase inhibitor I9 NMH04_07675 PF00082 Subtilase family NMH04_07680 PF03419 Sporulation factor SpoIIGA NMH04_07685 PF04542 Sigma-70 region 2 NMH04_07685 PF04545 Sigma-70, region 4 NMH04_07690 PF04542 Sigma-70 region 2 NMH04_07690 PF04539 Sigma-70 region 3 NMH04_07690 PF04545 Sigma-70, region 4 NMH04_07695 PF04198 Putative sugar-binding domain NMH04_07710 PF03608 PTS system enzyme II sorbitol-specific factor NMH04_07715 PF03612 Sorbitol phosphotransferase enzyme II N-terminus NMH04_07715 PF07663 Sorbitol phosphotransferase enzyme II C-terminus NMH04_07720 PF03829 PTS system glucitol/sorbitol-specific IIA component NMH04_07725 PF00005 ABC transporter NMH04_07730 PF05239 PRC-barrel domain NMH04_07735 PF02578 Multi-copper polyphenol oxidoreductase laccase NMH04_07740 PF01168 Alanine racemase, N-terminal domain NMH04_07745 PF04472 Cell division protein SepF NMH04_07750 PF02325 YGGT family NMH04_07755 PF01479 S4 domain NMH04_07755 PF17774 Putative RNA-binding domain in YlmH NMH04_07760 PF05103 DivIVA protein NMH04_07765 PF08264 Anticodon-binding domain of tRNA NMH04_07765 PF00133 tRNA synthetases class I (I, L, M and V) NMH04_07770 PF01258 Prokaryotic dksA/traR C4-type zinc finger NMH04_07775 PF01252 Signal peptidase (SPase) II NMH04_07780 PF00849 RNA pseudouridylate synthase NMH04_07780 PF01479 S4 domain NMH04_07785 PF00156 Phosphoribosyl transferase domain NMH04_07790 PF00860 Permease family NMH04_07795 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NMH04_07795 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NMH04_07800 PF01979 Amidohydrolase family NMH04_07805 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NMH04_07805 PF00117 Glutamine amidotransferase class-I NMH04_07810 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NMH04_07810 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NMH04_07810 PF02142 MGS-like domain NMH04_07815 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NMH04_07820 PF01180 Dihydroorotate dehydrogenase NMH04_07825 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NMH04_07830 PF00156 Phosphoribosyl transferase domain NMH04_07840 PF01507 Phosphoadenosine phosphosulfate reductase family NMH04_07845 PF01384 Phosphate transporter family NMH04_07850 PF01747 ATP-sulfurylase NMH04_07850 PF14306 PUA-like domain NMH04_07860 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NMH04_07865 PF01903 CbiX NMH04_07875 PF05670 NFACT protein RNA binding domain NMH04_07880 PF00689 Cation transporting ATPase, C-terminus NMH04_07880 PF00690 Cation transporter/ATPase, N-terminus NMH04_07885 PF03755 YicC-like family, N-terminal region NMH04_07885 PF08340 Domain of unknown function (DUF1732) NMH04_07890 PF04025 Domain of unknown function (DUF370) NMH04_07895 PF00625 Guanylate kinase NMH04_07900 PF01192 RNA polymerase Rpb6 NMH04_07905 PF04127 DNA / pantothenate metabolism flavoprotein NMH04_07905 PF02441 Flavoprotein NMH04_07910 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NMH04_07910 PF18074 Primosomal protein N C-terminal domain NMH04_07910 PF17764 3′ DNA-binding domain (3′BD) NMH04_07910 PF00271 Helicase conserved C-terminal domain NMH04_07910 PF04851 Type III restriction enzyme, res subunit NMH04_07915 PF01327 Polypeptide deformylase NMH04_07920 PF02911 Formyl transferase, C-terminal domain NMH04_07920 PF00551 Formyl transferase NMH04_07925 PF01029 NusB family NMH04_07925 PF01189 16S rRNA methyltransferase RsmB/F NMH04_07930 PF04055 Radical SAM superfamily NMH04_07940 PF03793 PASTA domain NMH04_07940 PF00069 Protein kinase domain NMH04_07945 PF03193 RsgA GTPase NMH04_07945 PF16745 RsgA N-terminal domain NMH04_07950 PF00834 Ribulose-phosphate 3 epimerase family NMH04_07955 PF04263 Thiamin pyrophosphokinase, catalytic domain NMH04_07955 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain NMH04_07960 PF08183 Stage V sporulation protein family NMH04_07965 PF00830 Ribosomal L28 family NMH04_07970 PF03780 Asp23 family, cell envelope-related function NMH04_07975 PF02734 DAK2 domain NMH04_07975 PF13684 Dihydroxyacetone kinase family NMH04_07980 PF01842 ACT domain NMH04_07980 PF03315 Serine dehydratase beta chain NMH04_07985 PF03313 Serine dehydratase alpha chain NMH04_07990 PF17191 RecG wedge domain NMH04_07990 PF00270 DEAD/DEAH box helicase NMH04_07990 PF00271 Helicase conserved C-terminal domain NMH04_08000 PF02504 Fatty acid synthesis protein NMH04_08005 PF00698 Acyl transferase domain NMH04_08015 PF00550 Phosphopantetheine attachment site NMH04_08020 PF00035 Double-stranded RNA binding motif NMH04_08020 PF14622 Ribonuclease-III-like NMH04_08025 PF06470 SMC proteins Flexible Hinge Domain NMH04_08025 PF02463 RecF/RecN/SMC N terminal domain NMH04_08030 PF00448 SRP54-type protein, GTPase domain NMH04_08030 PF02881 SRP54-type protein, helical bundle domain NMH04_08035 PF04297 Putative helix-turn-helix protein, YlxM / p13 like NMH04_08040 PF02978 Signal peptide binding domain NMH04_08040 PF02881 SRP54-type protein, helical bundle domain NMH04_08040 PF00448 SRP54-type protein, GTPase domain NMH04_08045 PF00886 Ribosomal protein S16 NMH04_08055 PF11068 YlqD protein NMH04_08060 PF05239 PRC-barrel domain NMH04_08060 PF01782 RimM N-terminal domain NMH04_08065 PF01746 tRNA (Guanine-1)-methyltransferase NMH04_08070 PF01245 Ribosomal protein L19 NMH04_08075 PF01926 50S ribosome-binding GTPase NMH04_08080 PF01351 Ribonuclease HII NMH04_08090 PF01312 FlhB HrpN YscU SpaS Family NMH04_08095 PF08442 ATP-grasp domain NMH04_08095 PF00549 CoA-ligase NMH04_08100 PF02629 CoA binding domain NMH04_08100 PF00549 CoA-ligase NMH04_08105 PF02481 DNA recombination-mediator protein A NMH04_08110 PF01751 Toprim domain NMH04_08110 PF01131 DNA topoisomerase NMH04_08110 PF01396 Topoisomerase DNA binding C4 zinc finger NMH04_08115 PF01134 Glucose inhibited division protein A NMH04_08120 PF00589 Phage integrase family NMH04_08120 PF02899 Phage integrase, N-terminal SAM-like domain NMH04_08125 PF00227 Proteasome subunit NMH04_08130 PF00004 ATPase family associated with various cellular activities (AAA) NMH04_08130 PF07724 AAA domain (Cdc48 subfamily) NMH04_08130 PF10431 C-terminal, D2-small domain, of ClpB protein NMH04_08135 PF06018 CodY GAF-like domain NMH04_08135 PF08222 CodY helix-turn-helix domain NMH04_08140 PF00460 Flagella basal body rod protein NMH04_08145 PF00460 Flagella basal body rod protein NMH04_08145 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NMH04_08150 PF02049 Flagellar hook-basal body complex protein FliE NMH04_08155 PF01514 Secretory protein of YscJ/FliF family NMH04_08155 PF08345 Flagellar M-ring protein C-terminal NMH04_08160 PF14842 FliG N-terminal domain NMH04_08160 PF01706 FliG C-terminal domain NMH04_08160 PF14841 FliG middle domain NMH04_08165 PF02108 Flagellar assembly protein FliH NMH04_08170 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NMH04_08170 PF02874 ATP synthase alpha/beta family, beta-barrel domain NMH04_08170 PF18269 T3SS EscN ATPase C-terminal domain NMH04_08175 PF02050 Flagellar FliJ protein NMH04_08180 PF03448 MgtE intracellular N domain NMH04_08185 PF02120 Flagellar hook-length control protein FliK NMH04_08190 PF03963 Flagellar hook capping protein - N-terminal region NMH04_08195 PF00460 Flagella basal body rod protein NMH04_08195 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NMH04_08200 PF06289 Flagellar and Swarming motility proteins NMH04_08205 PF03748 Flagellar basal body-associated protein FliL NMH04_08210 PF02154 Flagellar motor switch protein FliM NMH04_08210 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NMH04_08215 PF04509 CheC-like family NMH04_08215 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NMH04_08220 PF00072 Response regulator receiver domain NMH04_08225 PF04347 Flagellar biosynthesis protein, FliO NMH04_08230 PF00813 FliP family NMH04_08235 PF01313 Bacterial export proteins, family 3 NMH04_08240 PF01311 Bacterial export proteins, family 1 NMH04_08245 PF01312 FlhB HrpN YscU SpaS Family NMH04_08250 PF00771 FHIPEP family NMH04_08255 PF00448 SRP54-type protein, GTPase domain NMH04_08260 PF10609 NUBPL iron-transfer P-loop NTPase NMH04_08265 PF00072 Response regulator receiver domain NMH04_08265 PF01339 CheB methylesterase NMH04_08270 PF01627 Hpt domain NMH04_08270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMH04_08270 PF02895 Signal transducing histidine kinase, homodimeric domain NMH04_08270 PF01584 CheW-like domain NMH04_08270 PF07194 P2 response regulator binding domain NMH04_08275 PF01584 CheW-like domain NMH04_08280 PF04509 CheC-like family NMH04_08285 PF03975 CheD chemotactic sensory transduction NMH04_08290 PF04542 Sigma-70 region 2 NMH04_08290 PF04539 Sigma-70 region 3 NMH04_08290 PF04545 Sigma-70, region 4 NMH04_08300 PF00318 Ribosomal protein S2 NMH04_08305 PF00889 Elongation factor TS NMH04_08310 PF00696 Amino acid kinase family NMH04_08315 PF01765 Ribosome recycling factor NMH04_08320 PF01255 Putative undecaprenyl diphosphate synthase NMH04_08330 PF13288 DXP reductoisomerase C-terminal domain NMH04_08330 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NMH04_08330 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain NMH04_08335 PF02163 Peptidase family M50 NMH04_08335 PF17820 PDZ domain NMH04_08340 PF04073 Aminoacyl-tRNA editing domain NMH04_08340 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NMH04_08340 PF03129 Anticodon binding domain NMH04_08345 PF07733 Bacterial DNA polymerase III alpha NTPase domain NMH04_08345 PF11490 DNA polymerase III polC-type N-terminus II NMH04_08345 PF02811 PHP domain NMH04_08345 PF00929 Exonuclease NMH04_08345 PF14480 DNA polymerase III polC-type N-terminus I NMH04_08345 PF14579 Helix-hairpin-helix motif NMH04_08345 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NMH04_08350 PF00942 Cellulose binding domain NMH04_08350 PF00759 Glycosyl hydrolase family 9 NMH04_08355 PF00942 Cellulose binding domain NMH04_08355 PF02011 Glycosyl hydrolase family 48 NMH04_08355 PF00759 Glycosyl hydrolase family 9 NMH04_08360 PF00331 Glycosyl hydrolase family 10 NMH04_08360 PF12791 Anti-sigma factor N-terminus NMH04_08370 PF02576 RimP N-terminal domain NMH04_08370 PF17384 RimP C-terminal SH3 domain NMH04_08375 PF13184 NusA-like KH domain NMH04_08375 PF08529 NusA N-terminal domain NMH04_08375 PF00575 S1 RNA binding domain NMH04_08380 PF04296 Protein of unknown function (DUF448) NMH04_08385 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family NMH04_08390 PF04760 Translation initiation factor IF-2, N-terminal region NMH04_08390 PF11987 Translation-initiation factor 2 NMH04_08390 PF00009 Elongation factor Tu GTP binding domain NMH04_08395 PF04456 Protein of unknown function (DUF503) NMH04_08400 PF02033 Ribosome-binding factor A NMH04_08405 PF16198 tRNA pseudouridylate synthase B C-terminal domain NMH04_08405 PF01509 TruB family pseudouridylate synthase (N terminal domain) NMH04_08410 PF01687 Riboflavin kinase NMH04_08410 PF06574 FAD synthetase NMH04_08415 PF00312 Ribosomal protein S15 NMH04_08420 PF00013 KH domain NMH04_08420 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NMH04_08420 PF01138 3' exoribonuclease family, domain 1 NMH04_08420 PF03725 3' exoribonuclease family, domain 2 NMH04_08420 PF00575 S1 RNA binding domain NMH04_08425 PF01522 Polysaccharide deacetylase NMH04_08430 PF05193 Peptidase M16 inactive domain NMH04_08430 PF00675 Insulinase (Peptidase family M16) NMH04_08435 PF00550 Phosphopantetheine attachment site NMH04_08445 PF00664 ABC transporter transmembrane region NMH04_08445 PF00005 ABC transporter NMH04_08450 PF00664 ABC transporter transmembrane region NMH04_08450 PF00005 ABC transporter NMH04_08480 PF00144 Beta-lactamase NMH04_08485 PF01941 S-adenosylmethionine synthetase (AdoMet synthetase) NMH04_08490 PF00334 Nucleoside diphosphate kinase NMH04_08520 PF01658 Myo-inositol-1-phosphate synthase NMH04_08540 PF02655 ATP-grasp domain NMH04_08545 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NMH04_08545 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NMH04_08565 PF13537 Glutamine amidotransferase domain NMH04_08565 PF00733 Asparagine synthase NMH04_08570 PF05239 PRC-barrel domain NMH04_08575 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NMH04_08575 PF16924 Dipicolinate synthase subunit A N-terminal domain NMH04_08580 PF02441 Flavoprotein NMH04_08585 PF01118 Semialdehyde dehydrogenase, NAD binding domain NMH04_08585 PF02774 Semialdehyde dehydrogenase, dimerisation domain NMH04_08590 PF00696 Amino acid kinase family NMH04_08590 PF13840 ACT domain NMH04_08595 PF00701 Dihydrodipicolinate synthetase family NMH04_08600 PF17770 Ribonuclease J C-terminal domain NMH04_08600 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain NMH04_08600 PF00753 Metallo-beta-lactamase superfamily NMH04_08605 PF00574 Clp protease NMH04_08610 PF14035 YlzJ-like protein NMH04_08615 PF01580 FtsK/SpoIIIE family NMH04_08615 PF09397 Ftsk gamma domain NMH04_08615 PF17854 FtsK alpha domain NMH04_08620 PF07702 UTRA domain NMH04_08620 PF00392 Bacterial regulatory proteins, gntR family NMH04_08625 PF07690 Major Facilitator Superfamily NMH04_08630 PF03176 MMPL family NMH04_08635 PF05193 Peptidase M16 inactive domain NMH04_08640 PF00675 Insulinase (Peptidase family M16) NMH04_08640 PF05193 Peptidase M16 inactive domain NMH04_08650 PF03176 MMPL family NMH04_08660 PF11588 Protein of unknown function (DUF3243) NMH04_08665 PF11868 Protein of unknown function (DUF3388) NMH04_08670 PF13464 Domain of unknown function (DUF4115) NMH04_08675 PF01066 CDP-alcohol phosphatidyltransferase NMH04_08680 PF00994 Probable molybdopterin binding domain NMH04_08680 PF18146 Damage-inducible protein CinA KH domain NMH04_08680 PF02464 Competence-damaged protein NMH04_08685 PF00154 recA bacterial DNA recombination protein NMH04_08690 PF00013 KH domain NMH04_08690 PF01966 HD domain NMH04_08690 PF12072 Domain of unknown function (DUF3552) NMH04_08695 PF13277 YmdB-like protein NMH04_08700 PF04232 Stage V sporulation protein S (SpoVS) NMH04_08705 PF00873 AcrB/AcrD/AcrF family NMH04_08710 PF00107 Zinc-binding dehydrogenase NMH04_08710 PF08240 Alcohol dehydrogenase GroES-like domain NMH04_08715 PF00155 Aminotransferase class I and II NMH04_08720 PF00919 Uncharacterized protein family UPF0004 NMH04_08720 PF01938 TRAM domain NMH04_08720 PF04055 Radical SAM superfamily NMH04_08725 PF06133 Control of competence regulator ComK, YlbF/YmcA NMH04_08730 PF10628 Outer spore coat protein E (CotE) NMH04_08735 PF00488 MutS domain V NMH04_08735 PF01624 MutS domain I NMH04_08735 PF05188 MutS domain II NMH04_08735 PF05190 MutS family domain IV NMH04_08735 PF05192 MutS domain III NMH04_08740 PF01119 DNA mismatch repair protein, C-terminal domain NMH04_08740 PF08676 MutL C terminal dimerisation domain NMH04_08745 PF00589 Phage integrase family NMH04_08745 PF14659 Phage integrase, N-terminal SAM-like domain NMH04_08755 PF01381 Helix-turn-helix NMH04_08770 PF09669 Phage regulatory protein Rha (Phage_pRha) NMH04_08770 PF03374 Phage antirepressor protein KilAC domain NMH04_08815 PF00772 DnaB-like helicase N terminal domain NMH04_08815 PF03796 DnaB-like helicase C terminal domain NMH04_08915 PF01464 Transglycosylase SLT domain NMH04_08955 PF10960 BhlA holin family NMH04_08960 PF04688 SPP1 phage holin NMH04_08965 PF01510 N-acetylmuramoyl-L-alanine amidase NMH04_08965 PF01471 Putative peptidoglycan binding domain NMH04_08980 PF18801 response regulator aspartate phosphatase H, N terminal NMH04_08995 PF17735 Biofilm surface layer A NMH04_09005 PF02559 CarD-like/TRCF domain NMH04_09010 PF05908 Poly-gamma-glutamate hydrolase NMH04_09015 PF18801 response regulator aspartate phosphatase H, N terminal NMH04_09020 PF00082 Subtilase family NMH04_09025 PF05908 Poly-gamma-glutamate hydrolase NMH04_09030 PF02566 OsmC-like protein NMH04_09035 PF00893 Small Multidrug Resistance protein NMH04_09040 PF00893 Small Multidrug Resistance protein NMH04_09055 PF12788 YmaF family NMH04_09065 PF17209 Hfq protein NMH04_09080 PF07972 NrdI Flavodoxin like NMH04_09085 PF00317 Ribonucleotide reductase, all-alpha domain NMH04_09085 PF02867 Ribonucleotide reductase, barrel domain NMH04_09085 PF08343 Ribonucleotide reductase N-terminal NMH04_09090 PF00268 Ribonucleotide reductase, small chain NMH04_09100 PF05036 Sporulation related domain NMH04_09100 PF01520 N-acetylmuramoyl-L-alanine amidase NMH04_09105 PF17866 AAA lid domain NMH04_09105 PF00004 ATPase family associated with various cellular activities (AAA) NMH04_09110 PF16360 GTP-binding GTPase Middle Region NMH04_09110 PF01926 50S ribosome-binding GTPase NMH04_09110 PF13167 GTP-binding GTPase N-terminal NMH04_09115 PF06838 Methionine gamma-lyase NMH04_09120 PF13411 MerR HTH family regulatory protein NMH04_09125 PF00120 Glutamine synthetase, catalytic domain NMH04_09125 PF03951 Glutamine synthetase, beta-Grasp domain NMH04_09130 PF14449 Pre-toxin TG NMH04_09130 PF14410 HNH/ENDO VII superfamily nuclease with conserved GHE residues NMH04_09130 PF04740 LXG domain of WXG superfamily NMH04_09170 PF00293 NUDIX domain NMH04_09200 PF18801 response regulator aspartate phosphatase H, N terminal NMH04_09210 PF04740 LXG domain of WXG superfamily NMH04_09215 PF04634 Protein of unknown function, DUF600 NMH04_09230 PF01569 PAP2 superfamily NMH04_09235 PF08818 Domain of unknown function (DU1801) NMH04_09255 PF18801 response regulator aspartate phosphatase H, N terminal NMH04_09265 PF06912 Protein of unknown function (DUF1275) NMH04_09270 PF01068 ATP dependent DNA ligase domain NMH04_09275 PF02735 Ku70/Ku80 beta-barrel domain NMH04_09280 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) NMH04_09290 PF02082 Transcriptional regulator NMH04_09295 PF05368 NmrA-like family NMH04_09325 PF00005 ABC transporter NMH04_09330 PF02754 Cysteine-rich domain NMH04_09335 PF11870 Domain of unknown function (DUF3390) NMH04_09335 PF13183 4Fe-4S dicluster domain NMH04_09335 PF02589 LUD domain NMH04_09340 PF02589 LUD domain NMH04_09360 PF04239 Protein of unknown function (DUF421) NMH04_09365 PF00440 Bacterial regulatory proteins, tetR family NMH04_09365 PF16295 Tetracyclin repressor-like, C-terminal domain NMH04_09370 PF00258 Flavodoxin NMH04_09370 PF00667 FAD binding domain NMH04_09370 PF00067 Cytochrome P450 NMH04_09370 PF00175 Oxidoreductase NAD-binding domain NMH04_09375 PF00089 Trypsin NMH04_09380 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase NMH04_09385 PF14040 Deoxyribonuclease NucA/NucB NMH04_09390 PF01740 STAS domain NMH04_09395 PF16800 IseA DL-endopeptidase inhibitor NMH04_09405 PF01726 LexA DNA binding domain NMH04_09405 PF00717 Peptidase S24-like NMH04_09410 PF01476 LysM domain NMH04_09415 PF00239 Resolvase, N terminal domain NMH04_09420 PF05979 Bacterial protein of unknown function (DUF896) NMH04_09425 PF02779 Transketolase, pyrimidine binding domain NMH04_09425 PF02780 Transketolase, C-terminal domain NMH04_09425 PF00456 Transketolase, thiamine diphosphate binding domain NMH04_09430 PF10747 Sporulation inhibitor of replication protein SirA NMH04_09435 PF03672 Uncharacterised protein family (UPF0154) NMH04_09440 PF09388 Spo0E like sporulation regulatory protein NMH04_09445 PF02683 Cytochrome C biogenesis protein transmembrane region NMH04_09450 PF07301 Protein of unknown function (DUF1453) NMH04_09455 PF11084 Protein of unknown function (DUF2621) NMH04_09465 PF08179 Small acid-soluble spore protein P family NMH04_09475 PF00330 Aconitase family (aconitate hydratase) NMH04_09475 PF00694 Aconitase C-terminal domain NMH04_09480 PF00578 AhpC/TSA family NMH04_09485 PF13040 Fur-regulated basic protein B NMH04_09490 PF08177 Small acid-soluble spore protein N family NMH04_09500 PF03061 Thioesterase superfamily NMH04_09510 PF01521 Iron-sulphur cluster biosynthesis NMH04_09515 PF02660 Glycerol-3-phosphate acyltransferase NMH04_09520 PF13380 CoA binding domain NMH04_09525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMH04_09525 PF01751 Toprim domain NMH04_09525 PF00204 DNA gyrase B NMH04_09525 PF00986 DNA gyrase B subunit, carboxyl terminus NMH04_09530 PF03989 DNA gyrase C-terminal domain, beta-propeller NMH04_09530 PF00521 DNA gyrase/topoisomerase IV, subunit A NMH04_09540 PF07690 Major Facilitator Superfamily NMH04_09545 PF00180 Isocitrate/isopropylmalate dehydrogenase NMH04_09555 PF01451 Low molecular weight phosphotyrosine protein phosphatase NMH04_09560 PF02040 Arsenical pump membrane protein NMH04_09565 PF01022 Bacterial regulatory protein, arsR family NMH04_09575 PF00291 Pyridoxal-phosphate dependent enzyme NMH04_09580 PF01042 Endoribonuclease L-PSP NMH04_09590 PF00440 Bacterial regulatory proteins, tetR family NMH04_09595 PF01494 FAD binding domain NMH04_09615 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NMH04_09620 PF07859 alpha/beta hydrolase fold NMH04_09620 PF00934 PE family NMH04_09625 PF13411 MerR HTH family regulatory protein NMH04_09635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMH04_09635 PF00512 His Kinase A (phospho-acceptor) domain NMH04_09640 PF00072 Response regulator receiver domain NMH04_09640 PF00486 Transcriptional regulatory protein, C terminal NMH04_09645 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain NMH04_09645 PF17189 Glycosyl hydrolase family 30 beta sandwich domain NMH04_09650 PF03422 Carbohydrate binding module (family 6) NMH04_09650 PF04616 Glycosyl hydrolases family 43 NMH04_09655 PF00171 Aldehyde dehydrogenase family NMH04_09660 PF02056 Family 4 glycosyl hydrolase NMH04_09660 PF11975 Family 4 glycosyl hydrolase C-terminal domain NMH04_09665 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_09670 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_09675 PF01547 Bacterial extracellular solute-binding protein NMH04_09680 PF00356 Bacterial regulatory proteins, lacI family NMH04_09685 PF00834 Ribulose-phosphate 3 epimerase family NMH04_09700 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NMH04_09705 PF00583 Acetyltransferase (GNAT) family NMH04_09710 PF00392 Bacterial regulatory proteins, gntR family NMH04_09710 PF00155 Aminotransferase class I and II NMH04_09715 PF18593 CdiI immunity protein NMH04_09730 PF01047 MarR family NMH04_09735 PF07690 Major Facilitator Superfamily NMH04_09740 PF01116 Fructose-bisphosphate aldolase class-II NMH04_09745 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NMH04_09745 PF02378 Phosphotransferase system, EIIC NMH04_09745 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NMH04_09750 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NMH04_09750 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NMH04_09755 PF00294 pfkB family carbohydrate kinase NMH04_09760 PF01380 SIS domain NMH04_09760 PF01418 Helix-turn-helix domain, rpiR family NMH04_09765 PF13091 PLD-like domain NMH04_09785 PF00171 Aldehyde dehydrogenase family NMH04_09790 PF00258 Flavodoxin NMH04_09790 PF00175 Oxidoreductase NAD-binding domain NMH04_09790 PF00667 FAD binding domain NMH04_09795 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NMH04_09795 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NMH04_09805 PF16177 Acetyl-coenzyme A synthetase N-terminus NMH04_09805 PF00501 AMP-binding enzyme NMH04_09805 PF13193 AMP-binding enzyme C-terminal domain NMH04_09810 PF01039 Carboxyl transferase domain NMH04_09815 PF00378 Enoyl-CoA hydratase/isomerase NMH04_09820 PF00682 HMGL-like NMH04_09825 PF00364 Biotin-requiring enzyme NMH04_09830 PF02785 Biotin carboxylase C-terminal domain NMH04_09830 PF00289 Biotin carboxylase, N-terminal domain NMH04_09830 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NMH04_09835 PF13193 AMP-binding enzyme C-terminal domain NMH04_09835 PF00501 AMP-binding enzyme NMH04_09840 PF02770 Acyl-CoA dehydrogenase, middle domain NMH04_09840 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NMH04_09840 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NMH04_09845 PF02638 Glycosyl hydrolase-like 10 NMH04_09850 PF13350 Tyrosine phosphatase family NMH04_09855 PF08220 DeoR-like helix-turn-helix domain NMH04_09855 PF00455 DeoR C terminal sensor domain NMH04_09860 PF14552 Tautomerase enzyme NMH04_09870 PF13556 PucR C-terminal helix-turn-helix domain NMH04_09870 PF05651 Putative sugar diacid recognition NMH04_09870 PF17853 GGDEF-like domain NMH04_09875 PF02913 FAD linked oxidases, C-terminal domain NMH04_09875 PF01565 FAD binding domain NMH04_09880 PF02754 Cysteine-rich domain NMH04_09880 PF13183 4Fe-4S dicluster domain NMH04_09885 PF03323 Bacillus/Clostridium GerA spore germination protein NMH04_09890 PF03845 Spore germination protein NMH04_09900 PF12728 Helix-turn-helix domain NMH04_09905 PF04138 GtrA-like protein NMH04_09910 PF00483 Nucleotidyl transferase NMH04_09915 PF09335 SNARE associated Golgi protein NMH04_09920 PF02602 Uroporphyrinogen-III synthase HemD NMH04_09930 PF00296 Luciferase-like monooxygenase NMH04_09950 PF01554 MatE NMH04_09955 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family NMH04_09960 PF01095 Pectinesterase NMH04_09965 PF04239 Protein of unknown function (DUF421) NMH04_09970 PF00355 Rieske [2Fe-2S] domain NMH04_09975 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NMH04_09975 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NMH04_09975 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMH04_09975 PF18267 Rubredoxin NAD+ reductase C-terminal domain NMH04_09975 PF04324 BFD-like [2Fe-2S] binding domain NMH04_09980 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NMH04_09980 PF00384 Molybdopterin oxidoreductase NMH04_09980 PF01568 Molydopterin dinucleotide binding domain NMH04_09985 PF04324 BFD-like [2Fe-2S] binding domain NMH04_09985 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NMH04_09985 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMH04_09985 PF18267 Rubredoxin NAD+ reductase C-terminal domain NMH04_09990 PF07690 Major Facilitator Superfamily NMH04_09995 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMH04_09995 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NMH04_10000 PF01645 Conserved region in glutamate synthase NMH04_10000 PF01493 GXGXG motif NMH04_10000 PF00310 Glutamine amidotransferases class-II NMH04_10000 PF04898 Glutamate synthase central domain NMH04_10005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMH04_10005 PF03466 LysR substrate binding domain NMH04_10010 PF00664 ABC transporter transmembrane region NMH04_10010 PF00005 ABC transporter NMH04_10015 PF00664 ABC transporter transmembrane region NMH04_10015 PF00005 ABC transporter NMH04_10020 PF06445 GyrI-like small molecule binding domain NMH04_10020 PF13411 MerR HTH family regulatory protein NMH04_10025 PF00583 Acetyltransferase (GNAT) family NMH04_10030 PF00171 Aldehyde dehydrogenase family NMH04_10035 PF00696 Amino acid kinase family NMH04_10035 PF01472 PUA domain NMH04_10040 PF03807 NADP oxidoreductase coenzyme F420-dependent NMH04_10040 PF14748 Pyrroline-5-carboxylate reductase dimerisation NMH04_10045 PF00067 Cytochrome P450 NMH04_10050 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NMH04_10050 PF00384 Molybdopterin oxidoreductase NMH04_10050 PF01568 Molydopterin dinucleotide binding domain NMH04_10055 PF00457 Glycosyl hydrolases family 11 NMH04_10060 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NMH04_10060 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NMH04_10065 PF01261 Xylose isomerase-like TIM barrel NMH04_10070 PF00480 ROK family NMH04_10075 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain NMH04_10075 PF04616 Glycosyl hydrolases family 43 NMH04_10085 PF01588 Putative tRNA binding domain NMH04_10095 PF14158 YndJ-like protein NMH04_10100 PF13761 Domain of unknown function (DUF4166) NMH04_10110 PF13305 Tetracyclin repressor-like, C-terminal domain NMH04_10110 PF00440 Bacterial regulatory proteins, tetR family NMH04_10115 PF00753 Metallo-beta-lactamase superfamily NMH04_10120 PF06445 GyrI-like small molecule binding domain NMH04_10125 PF08279 HTH domain NMH04_10125 PF13280 WYL domain NMH04_10135 PF01022 Bacterial regulatory protein, arsR family NMH04_10140 PF00324 Amino acid permease NMH04_10155 PF03972 MmgE/PrpD family NMH04_10160 PF00285 Citrate synthase, C-terminal domain NMH04_10165 PF04238 Protein of unknown function (DUF420) NMH04_10175 PF06725 3D domain NMH04_10175 PF01476 LysM domain NMH04_10180 PF00270 DEAD/DEAH box helicase NMH04_10180 PF00271 Helicase conserved C-terminal domain NMH04_10180 PF00570 HRDC domain NMH04_10180 PF16124 RecQ zinc-binding NMH04_10180 PF09382 RQC domain NMH04_10190 PF01258 Prokaryotic dksA/traR C4-type zinc finger NMH04_10200 PF08000 Bacterial PH domain NMH04_10215 PF00171 Aldehyde dehydrogenase family NMH04_10220 PF13243 Squalene-hopene cyclase C-terminal domain NMH04_10220 PF13249 Squalene-hopene cyclase N-terminal domain NMH04_10225 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NMH04_10225 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NMH04_10230 PF01758 Sodium Bile acid symporter family NMH04_10235 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NMH04_10235 PF00364 Biotin-requiring enzyme NMH04_10235 PF02817 e3 binding domain NMH04_10240 PF16078 2-oxoglutarate dehydrogenase N-terminus NMH04_10240 PF00676 Dehydrogenase E1 component NMH04_10240 PF16870 2-oxoglutarate dehydrogenase C-terminal NMH04_10240 PF02779 Transketolase, pyrimidine binding domain NMH04_10245 PF00092 von Willebrand factor type A domain NMH04_10250 PF07728 AAA domain (dynein-related subfamily) NMH04_10255 PF13627 Prokaryotic lipoprotein-attachment site NMH04_10255 PF00080 Copper/zinc superoxide dismutase (SODC) NMH04_10260 PF01476 LysM domain NMH04_10260 PF00877 NlpC/P60 family NMH04_10265 PF02457 DisA bacterial checkpoint controller nucleotide-binding NMH04_10265 PF10372 Bacterial membrane-spanning protein N-terminus NMH04_10270 PF01554 MatE NMH04_10275 PF02585 GlcNAc-PI de-N-acetylase NMH04_10280 PF08830 Protein of unknown function (DUF1806) NMH04_10290 PF00892 EamA-like transporter family NMH04_10305 PF01638 HxlR-like helix-turn-helix NMH04_10310 PF00881 Nitroreductase family NMH04_10315 PF11755 Protein of unknown function (DUF3311) NMH04_10320 PF00474 Sodium:solute symporter family NMH04_10325 PF17820 PDZ domain NMH04_10325 PF03572 Peptidase family S41 NMH04_10325 PF01471 Putative peptidoglycan binding domain NMH04_10330 PF08241 Methyltransferase domain NMH04_10340 PF02557 D-alanyl-D-alanine carboxypeptidase NMH04_10345 PF01048 Phosphorylase superfamily NMH04_10355 PF01569 PAP2 superfamily NMH04_10360 PF14162 YozD-like protein NMH04_10370 PF06855 YozE SAM-like fold NMH04_10375 PF14122 YokU-like protein, putative antitoxin NMH04_10380 PF12544 Lysine-2,3-aminomutase NMH04_10385 PF00158 Sigma-54 interaction domain NMH04_10385 PF13426 PAS domain NMH04_10385 PF02954 Bacterial regulatory protein, Fis family NMH04_10390 PF00535 Glycosyl transferase family 2 NMH04_10405 PF12996 DUF based on E. rectale Gene description (DUF3880) NMH04_10415 PF02719 Polysaccharide biosynthesis protein NMH04_10420 PF01641 SelR domain NMH04_10425 PF01625 Peptide methionine sulfoxide reductase NMH04_10430 PF01047 MarR family NMH04_10445 PF17431 Uncharacterized YmpT-like NMH04_10450 PF09911 Uncharacterized protein conserved in bacteria (DUF2140) NMH04_10455 PF13472 GDSL-like Lipase/Acylhydrolase family NMH04_10460 PF02630 SCO1/SenC NMH04_10465 PF02645 Uncharacterised protein, DegV family COG1307 NMH04_10470 PF10751 Protein of unknown function (DUF2535) NMH04_10475 PF00291 Pyridoxal-phosphate dependent enzyme NMH04_10475 PF00585 C-terminal regulatory domain of Threonine dehydratase NMH04_10480 PF08461 Ribonuclease R winged-helix domain NMH04_10480 PF00158 Sigma-54 interaction domain NMH04_10485 PF03006 Haemolysin-III related NMH04_10495 PF00186 Dihydrofolate reductase NMH04_10500 PF00303 Thymidylate synthase NMH04_10505 PF04608 Phosphatidylglycerophosphatase A NMH04_10510 PF14005 YpjP-like protein NMH04_10515 PF04445 Putative SAM-dependent methyltransferase NMH04_10520 PF06491 Disulphide isomerase NMH04_10525 PF00920 Dehydratase family NMH04_10530 PF13769 Virulence factor NMH04_10530 PF08712 Scaffold protein Nfu/NifU N terminal NMH04_10535 PF01966 HD domain NMH04_10540 PF00255 Glutathione peroxidase NMH04_10545 PF01268 Formate--tetrahydrofolate ligase NMH04_10550 PF04204 Homoserine O-succinyltransferase NMH04_10555 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase NMH04_10555 PF00534 Glycosyl transferases group 1 NMH04_10565 PF00313 'Cold-shock' DNA-binding domain NMH04_10575 PF10782 Zinc-finger NMH04_10580 PF13456 Reverse transcriptase-like NMH04_10585 PF02592 Putative vitamin uptake transporter NMH04_10590 PF13456 Reverse transcriptase-like NMH04_10600 PF01367 5'-3' exonuclease, C-terminal SAM fold NMH04_10600 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NMH04_10610 PF00350 Dynamin family NMH04_10615 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family NMH04_10620 PF02797 Chalcone and stilbene synthases, C-terminal domain NMH04_10620 PF00195 Chalcone and stilbene synthases, N-terminal domain NMH04_10625 PF13673 Acetyltransferase (GNAT) domain NMH04_10625 PF04229 GrpB protein NMH04_10630 PF01522 Polysaccharide deacetylase NMH04_10635 PF00860 Permease family NMH04_10645 PF02074 Carboxypeptidase Taq (M32) metallopeptidase NMH04_10650 PF13307 Helicase C-terminal domain NMH04_10660 PF02926 THUMP domain NMH04_10660 PF01170 Putative RNA methylase family UPF0020 NMH04_10670 PF05103 DivIVA protein NMH04_10675 PF06908 YspA SLOG family NMH04_10680 PF11122 Inner spore coat protein D NMH04_10685 PF13482 RNase_H superfamily NMH04_10690 PF00271 Helicase conserved C-terminal domain NMH04_10690 PF09369 Domain of unknown function (DUF1998) NMH04_10690 PF00270 DEAD/DEAH box helicase NMH04_10695 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NMH04_10700 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NMH04_10710 PF14179 YppG-like protein NMH04_10730 PF10720 Protein of unknown function (DUF2515) NMH04_10735 PF03838 Recombination protein U NMH04_10740 PF00905 Penicillin binding protein transpeptidase domain NMH04_10740 PF00912 Transglycosylase NMH04_10750 PF00730 HhH-GPD superfamily base excision DNA repair protein NMH04_10750 PF00633 Helix-hairpin-helix motif NMH04_10750 PF10576 Iron-sulfur binding domain of endonuclease III NMH04_10755 PF07261 Replication initiation and membrane attachment NMH04_10760 PF00152 tRNA synthetases class II (D, K and N) NMH04_10760 PF01336 OB-fold nucleic acid binding domain NMH04_10765 PF03413 Peptidase propeptide and YPEB domain NMH04_10765 PF17881 Domain of unknown function (DUF5590) NMH04_10770 PF14084 Protein of unknown function (DUF4264) NMH04_10775 PF13307 Helicase C-terminal domain NMH04_10775 PF00929 Exonuclease NMH04_10775 PF04851 Type III restriction enzyme, res subunit NMH04_10780 PF02261 Aspartate decarboxylase NMH04_10785 PF02569 Pantoate-beta-alanine ligase NMH04_10790 PF02548 Ketopantoate hydroxymethyltransferase NMH04_10795 PF02237 Biotin protein ligase C terminal domain NMH04_10795 PF08279 HTH domain NMH04_10795 PF03099 Biotin/lipoate A/B protein ligase family NMH04_10800 PF01743 Poly A polymerase head domain NMH04_10800 PF12627 Probable RNA and SrmB- binding site of polymerase A NMH04_10800 PF13735 tRNA nucleotidyltransferase domain 2 putative NMH04_10805 PF13439 Glycosyltransferase Family 4 NMH04_10805 PF00534 Glycosyl transferases group 1 NMH04_10810 PF02585 GlcNAc-PI de-N-acetylase NMH04_10815 PF02142 MGS-like domain NMH04_10820 PF05173 Dihydrodipicolinate reductase, C-terminus NMH04_10820 PF01113 Dihydrodipicolinate reductase, N-terminus NMH04_10825 PF03819 MazG nucleotide pyrophosphohydrolase domain NMH04_10830 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NMH04_10830 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 NMH04_10835 PF09577 Sporulation protein YpjB (SpoYpjB) NMH04_10840 PF07187 Protein of unknown function (DUF1405) NMH04_10845 PF00032 Cytochrome b(C-terminal)/b6/petD NMH04_10845 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NMH04_10850 PF00033 Cytochrome b/b6/petB NMH04_10855 PF00355 Rieske [2Fe-2S] domain NMH04_10860 PF10673 Protein of unknown function (DUF2487) NMH04_10865 PF08864 UPF0302 domain NMH04_10865 PF08858 IDEAL domain NMH04_10875 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NMH04_10880 PF01842 ACT domain NMH04_10880 PF02153 Prephenate dehydrogenase NMH04_10885 PF00155 Aminotransferase class I and II NMH04_10890 PF00290 Tryptophan synthase alpha chain NMH04_10895 PF00291 Pyridoxal-phosphate dependent enzyme NMH04_10900 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NMH04_10905 PF00218 Indole-3-glycerol phosphate synthase NMH04_10910 PF02885 Glycosyl transferase family, helical bundle domain NMH04_10910 PF00591 Glycosyl transferase family, a/b domain NMH04_10915 PF04715 Anthranilate synthase component I, N terminal region NMH04_10915 PF00425 chorismate binding enzyme NMH04_10920 PF07736 Chorismate mutase type I NMH04_10925 PF01761 3-dehydroquinate synthase NMH04_10930 PF01264 Chorismate synthase NMH04_10935 PF01739 CheR methyltransferase, SAM binding domain NMH04_10935 PF03705 CheR methyltransferase, all-alpha domain NMH04_10940 PF00334 Nucleoside diphosphate kinase NMH04_10945 PF00348 Polyprenyl synthetase NMH04_10950 PF01209 ubiE/COQ5 methyltransferase family NMH04_10955 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 NMH04_10960 PF02081 Tryptophan RNA-binding attenuator protein NMH04_10965 PF01227 GTP cyclohydrolase I NMH04_10970 PF00216 Bacterial DNA-binding protein NMH04_10975 PF09547 Stage IV sporulation protein A (spore_IV_A) NMH04_10985 PF10966 Protein of unknown function (DUF2768) NMH04_10990 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NMH04_10990 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NMH04_10995 PF01926 50S ribosome-binding GTPase NMH04_10995 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NMH04_11005 PF14045 YIEGIA protein NMH04_11015 PF14140 YpzI-like protein NMH04_11020 PF01070 FMN-dependent dehydrogenase NMH04_11025 PF00575 S1 RNA binding domain NMH04_11030 PF02224 Cytidylate kinase NMH04_11035 PF17313 Family of unknown function (DUF5359) NMH04_11040 PF07238 PilZ domain NMH04_11040 PF12945 Flagellar protein YcgR NMH04_11045 PF03413 Peptidase propeptide and YPEB domain NMH04_11045 PF14620 YpeB sporulation NMH04_11050 PF07486 Cell Wall Hydrolase NMH04_11050 PF01471 Putative peptidoglycan binding domain NMH04_11055 PF13367 PrsW family intramembrane metalloprotease NMH04_11065 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NMH04_11065 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NMH04_11070 PF05389 Negative regulator of genetic competence (MecA) NMH04_11075 PF00149 Calcineurin-like phosphoesterase NMH04_11080 PF10864 Protein of unknown function (DUF2663) NMH04_11085 PF01476 LysM domain NMH04_11090 PF02517 CPBP intramembrane metalloprotease NMH04_11095 PF00270 DEAD/DEAH box helicase NMH04_11095 PF00271 Helicase conserved C-terminal domain NMH04_11100 PF14493 Helix-turn-helix domain NMH04_11110 PF12822 ECF transporter, substrate-specific component NMH04_11115 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NMH04_11115 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NMH04_11115 PF01842 ACT domain NMH04_11120 PF01476 LysM domain NMH04_11120 PF01551 Peptidase family M23 NMH04_11130 PF04542 Sigma-70 region 2 NMH04_11130 PF08281 Sigma-70, region 4 NMH04_11135 PF18698 Histidine kinase sensor domain NMH04_11135 PF00989 PAS fold NMH04_11135 PF00512 His Kinase A (phospho-acceptor) domain NMH04_11135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMH04_11135 PF00672 HAMP domain NMH04_11140 PF00072 Response regulator receiver domain NMH04_11140 PF00486 Transcriptional regulatory protein, C terminal NMH04_11145 PF01578 Cytochrome C assembly protein NMH04_11150 PF05140 ResB-like family NMH04_11155 PF00578 AhpC/TSA family NMH04_11160 PF01479 S4 domain NMH04_11160 PF00849 RNA pseudouridylate synthase NMH04_11165 PF07670 Nucleoside recognition NMH04_11170 PF07670 Nucleoside recognition NMH04_11175 PF00768 D-alanyl-D-alanine carboxypeptidase NMH04_11175 PF07943 Penicillin-binding protein 5, C-terminal domain NMH04_11185 PF13047 Protein of unknown function (DUF3907) NMH04_11190 PF04079 Segregation and condensation complex subunit ScpB NMH04_11195 PF02616 Segregation and condensation protein ScpA NMH04_11205 PF03745 Domain of unknown function (DUF309) NMH04_11210 PF00583 Acetyltransferase (GNAT) family NMH04_11215 PF00885 6,7-dimethyl-8-ribityllumazine synthase NMH04_11225 PF00677 Lumazine binding domain NMH04_11245 PF07690 Major Facilitator Superfamily NMH04_11250 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NMH04_11255 PF06207 Protein of unknown function (DUF1002) NMH04_11260 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NMH04_11260 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NMH04_11265 PF03323 Bacillus/Clostridium GerA spore germination protein NMH04_11270 PF14097 Stage V sporulation protein AE1 NMH04_11275 PF03862 SpoVAC/SpoVAEB sporulation membrane protein NMH04_11280 PF07451 Stage V sporulation protein AD (SpoVAD) NMH04_11285 PF03862 SpoVAC/SpoVAEB sporulation membrane protein NMH04_11290 PF13782 Stage V sporulation protein AB NMH04_11295 PF12164 Stage V sporulation protein AA NMH04_11300 PF04539 Sigma-70 region 3 NMH04_11300 PF04545 Sigma-70, region 4 NMH04_11300 PF04542 Sigma-70 region 2 NMH04_11305 PF13581 Histidine kinase-like ATPase domain NMH04_11310 PF01740 STAS domain NMH04_11315 PF07943 Penicillin-binding protein 5, C-terminal domain NMH04_11315 PF00768 D-alanyl-D-alanine carboxypeptidase NMH04_11320 PF01048 Phosphorylase superfamily NMH04_11325 PF01676 Metalloenzyme superfamily NMH04_11330 PF02899 Phage integrase, N-terminal SAM-like domain NMH04_11330 PF00589 Phage integrase family NMH04_11335 PF14004 Protein of unknown function (DUF4227) NMH04_11340 PF01475 Ferric uptake regulator family NMH04_11345 PF01944 Stage II sporulation protein M NMH04_11350 PF00082 Subtilase family NMH04_11350 PF05922 Peptidase inhibitor I9 NMH04_11360 PF13673 Acetyltransferase (GNAT) domain NMH04_11370 PF00293 NUDIX domain NMH04_11375 PF00248 Aldo/keto reductase family NMH04_11385 PF12146 Serine aminopeptidase, S33 NMH04_11390 PF18801 response regulator aspartate phosphatase H, N terminal NMH04_11395 PF10827 Protein of unknown function (DUF2552) NMH04_11400 PF01521 Iron-sulphur cluster biosynthesis NMH04_11405 PF03330 Lytic transglycolase NMH04_11410 PF13673 Acetyltransferase (GNAT) domain NMH04_11410 PF04229 GrpB protein NMH04_11415 PF00583 Acetyltransferase (GNAT) family NMH04_11420 PF10787 Uncharacterised protein from bacillus cereus group NMH04_11425 PF00817 impB/mucB/samB family NMH04_11425 PF11799 impB/mucB/samB family C-terminal domain NMH04_11430 PF08863 YolD-like protein NMH04_11435 PF07690 Major Facilitator Superfamily NMH04_11440 PF00485 Phosphoribulokinase / Uridine kinase family NMH04_11445 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NMH04_11445 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMH04_11455 PF00106 short chain dehydrogenase NMH04_11460 PF00753 Metallo-beta-lactamase superfamily NMH04_11465 PF03807 NADP oxidoreductase coenzyme F420-dependent NMH04_11465 PF14748 Pyrroline-5-carboxylate reductase dimerisation NMH04_11485 PF04055 Radical SAM superfamily NMH04_11490 PF01546 Peptidase family M20/M25/M40 NMH04_11495 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NMH04_11500 PF12146 Serine aminopeptidase, S33 NMH04_11505 PF12897 Alanine-glyoxylate amino-transferase NMH04_11510 PF12706 Beta-lactamase superfamily domain NMH04_11515 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain NMH04_11515 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain NMH04_11520 PF00392 Bacterial regulatory proteins, gntR family NMH04_11520 PF07702 UTRA domain NMH04_11525 PF00232 Glycosyl hydrolase family 1 NMH04_11530 PF02378 Phosphotransferase system, EIIC NMH04_11535 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit NMH04_11540 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NMH04_11555 PF06800 Sugar transport protein NMH04_11560 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain NMH04_11560 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NMH04_11565 PF00817 impB/mucB/samB family NMH04_11565 PF11799 impB/mucB/samB family C-terminal domain NMH04_11565 PF11798 IMS family HHH motif NMH04_11575 PF02096 60Kd inner membrane protein NMH04_11580 PF01584 CheW-like domain NMH04_11585 PF07687 Peptidase dimerisation domain NMH04_11585 PF01546 Peptidase family M20/M25/M40 NMH04_11590 PF01039 Carboxyl transferase domain NMH04_11605 PF03734 L,D-transpeptidase catalytic domain NMH04_11610 PF06081 Aromatic acid exporter family member 1 NMH04_11610 PF11728 Putative aromatic acid exporter C-terminal domain NMH04_11615 PF00005 ABC transporter NMH04_11620 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_11625 PF00497 Bacterial extracellular solute-binding proteins, family 3 NMH04_11630 PF06491 Disulphide isomerase NMH04_11635 PF00781 Diacylglycerol kinase catalytic domain NMH04_11645 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NMH04_11645 PF02817 e3 binding domain NMH04_11645 PF00364 Biotin-requiring enzyme NMH04_11650 PF02779 Transketolase, pyrimidine binding domain NMH04_11650 PF02780 Transketolase, C-terminal domain NMH04_11655 PF00676 Dehydrogenase E1 component NMH04_11660 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NMH04_11660 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMH04_11665 PF00871 Acetokinase family NMH04_11670 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NMH04_11670 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NMH04_11675 PF01515 Phosphate acetyl/butaryl transferase NMH04_11680 PF00158 Sigma-54 interaction domain NMH04_11680 PF00989 PAS fold NMH04_11680 PF02954 Bacterial regulatory protein, Fis family NMH04_11685 PF11118 Protein of unknown function (DUF2627) NMH04_11690 PF03009 Glycerophosphoryl diester phosphodiesterase family NMH04_11695 PF18801 response regulator aspartate phosphatase H, N terminal NMH04_11705 PF17820 PDZ domain NMH04_11705 PF05580 SpoIVB peptidase S55 NMH04_11710 PF13476 AAA domain NMH04_11715 PF01316 Arginine repressor, DNA binding domain NMH04_11715 PF02863 Arginine repressor, C-terminal domain NMH04_11720 PF01728 FtsJ-like methyltransferase NMH04_11720 PF01479 S4 domain NMH04_11725 PF02780 Transketolase, C-terminal domain NMH04_11725 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NMH04_11725 PF02779 Transketolase, pyrimidine binding domain NMH04_11730 PF00348 Polyprenyl synthetase NMH04_11735 PF02609 Exonuclease VII small subunit NMH04_11740 PF02601 Exonuclease VII, large subunit NMH04_11740 PF13742 OB-fold nucleic acid binding domain NMH04_11745 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NMH04_11745 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NMH04_11750 PF01029 NusB family NMH04_11755 PF03780 Asp23 family, cell envelope-related function NMH04_11760 PF00289 Biotin carboxylase, N-terminal domain NMH04_11760 PF02785 Biotin carboxylase C-terminal domain NMH04_11760 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NMH04_11765 PF00364 Biotin-requiring enzyme NMH04_11770 PF12685 SpoIIIAH-like protein NMH04_11780 PF09581 Stage III sporulation protein AF (Spore_III_AF) NMH04_11785 PF09546 Stage III sporulation protein AE (spore_III_AE) NMH04_11790 PF06686 Stage III sporulation protein AC/AD protein family NMH04_11795 PF06686 Stage III sporulation protein AC/AD protein family NMH04_11800 PF09548 Stage III sporulation protein AB (spore_III_AB) NMH04_11810 PF10942 Protein of unknown function (DUF2619) NMH04_11815 PF01132 Elongation factor P (EF-P) OB domain NMH04_11815 PF08207 Elongation factor P (EF-P) KOW-like domain NMH04_11815 PF09285 Elongation factor P, C-terminal NMH04_11820 PF01321 Creatinase/Prolidase N-terminal domain NMH04_11820 PF00557 Metallopeptidase family M24 NMH04_11825 PF01220 Dehydroquinase class II NMH04_11830 PF11085 Conserved membrane protein YqhR NMH04_11835 PF07136 Protein of unknown function (DUF1385) NMH04_11845 PF01734 Patatin-like phospholipase NMH04_11850 PF02742 Iron dependent repressor, metal binding and dimerisation domain NMH04_11850 PF01325 Iron dependent repressor, N-terminal DNA binding domain NMH04_11855 PF03099 Biotin/lipoate A/B protein ligase family NMH04_11860 PF00581 Rhodanese-like domain NMH04_11865 PF02347 Glycine cleavage system P-protein NMH04_11870 PF02347 Glycine cleavage system P-protein NMH04_11875 PF01571 Aminomethyltransferase folate-binding domain NMH04_11875 PF08669 Glycine cleavage T-protein C-terminal barrel domain NMH04_11880 PF00271 Helicase conserved C-terminal domain NMH04_11880 PF00176 SNF2 family N-terminal domain NMH04_11885 PF11079 Bacterial protein YqhG of unknown function NMH04_11895 PF01381 Helix-turn-helix NMH04_11895 PF08671 Anti-repressor SinI NMH04_11900 PF12389 Camelysin metallo-endopeptidase NMH04_11915 PF13028 Protein of unknown function (DUF3889) NMH04_11920 PF14038 YqzE-like protein NMH04_11940 PF07963 Prokaryotic N-terminal methylation motif NMH04_11945 PF07963 Prokaryotic N-terminal methylation motif NMH04_11950 PF00482 Type II secretion system (T2SS), protein F NMH04_11955 PF00437 Type II/IV secretion system protein NMH04_11960 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain NMH04_11960 PF01740 STAS domain NMH04_11970 PF03960 ArsC family NMH04_11975 PF11117 Protein of unknown function (DUF2626) NMH04_11980 PF00753 Metallo-beta-lactamase superfamily NMH04_11985 PF10958 Protein of unknown function (DUF2759) NMH04_11995 PF01910 Thiamine-binding protein NMH04_12000 PF07690 Major Facilitator Superfamily NMH04_12005 PF00246 Zinc carboxypeptidase NMH04_12010 PF00884 Sulfatase NMH04_12015 PF00480 ROK family NMH04_12020 PF06014 Bacterial protein of unknown function (DUF910) NMH04_12025 PF01694 Rhomboid family NMH04_12040 PF01812 5-formyltetrahydrofolate cyclo-ligase family NMH04_12045 PF00471 Ribosomal protein L33 NMH04_12060 PF00005 ABC transporter NMH04_12065 PF00005 ABC transporter NMH04_12070 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_12075 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_12080 PF12849 PBP superfamily domain NMH04_12085 PF03717 Penicillin-binding Protein dimerisation domain NMH04_12085 PF00905 Penicillin binding protein transpeptidase domain NMH04_12090 PF07690 Major Facilitator Superfamily NMH04_12095 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NMH04_12095 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NMH04_12100 PF04306 Protein of unknown function (DUF456) NMH04_12105 PF06691 Protein of unknown function (DUF1189) NMH04_12110 PF13302 Acetyltransferase (GNAT) domain NMH04_12120 PF04551 GcpE protein NMH04_12135 PF00480 ROK family NMH04_12140 PF01475 Ferric uptake regulator family NMH04_12145 PF00950 ABC 3 transport family NMH04_12150 PF00005 ABC transporter NMH04_12155 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NMH04_12155 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 NMH04_12160 PF11116 Protein of unknown function (DUF2624) NMH04_12165 PF01261 Xylose isomerase-like TIM barrel NMH04_12170 PF00270 DEAD/DEAH box helicase NMH04_12170 PF00271 Helicase conserved C-terminal domain NMH04_12180 PF02401 LytB protein NMH04_12185 PF01784 NIF3 (NGG1p interacting factor 3) NMH04_12190 PF04816 tRNA (adenine(22)-N(1))-methyltransferase NMH04_12195 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NMH04_12200 PF03979 Sigma-70 factor, region 1.1 NMH04_12200 PF04545 Sigma-70, region 4 NMH04_12200 PF04539 Sigma-70 region 3 NMH04_12200 PF04542 Sigma-70 region 2 NMH04_12200 PF00140 Sigma-70 factor, region 1.2 NMH04_12205 PF10410 DnaB-helicase binding domain of primase NMH04_12205 PF08275 DNA primase catalytic core, N-terminal domain NMH04_12205 PF01807 CHC2 zinc finger NMH04_12210 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 NMH04_12215 PF03618 Kinase/pyrophosphorylase NMH04_12220 PF08279 HTH domain NMH04_12220 PF00571 CBS domain NMH04_12225 PF02092 Glycyl-tRNA synthetase beta subunit NMH04_12230 PF02091 Glycyl-tRNA synthetase alpha subunit NMH04_12235 PF02565 Recombination protein O C terminal NMH04_12235 PF11967 Recombination protein O N terminal NMH04_12240 PF14006 YqzL-like protein NMH04_12245 PF07650 KH domain NMH04_12245 PF01926 50S ribosome-binding GTPase NMH04_12250 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NMH04_12255 PF01219 Prokaryotic diacylglycerol kinase NMH04_12260 PF02130 Uncharacterized protein family UPF0054 NMH04_12265 PF07698 7TM receptor with intracellular HD hydrolase NMH04_12265 PF07697 7TM-HD extracellular NMH04_12265 PF01966 HD domain NMH04_12270 PF02562 PhoH-like protein NMH04_12275 PF06898 Putative stage IV sporulation protein YqfD NMH04_12280 PF07873 YabP family NMH04_12290 PF12127 SigmaW regulon antibacterial NMH04_12295 PF01957 NfeD-like C-terminal, partner-binding NMH04_12295 PF01972 Serine dehydrogenase proteinase NMH04_12300 PF09424 Yqey-like protein NMH04_12305 PF01165 Ribosomal protein S21 NMH04_12310 PF02690 Na+/Pi-cotransporter NMH04_12315 PF01938 TRAM domain NMH04_12315 PF00919 Uncharacterized protein family UPF0004 NMH04_12315 PF04055 Radical SAM superfamily NMH04_12320 PF04452 RNA methyltransferase NMH04_12330 PF00226 DnaJ domain NMH04_12330 PF01556 DnaJ C terminal domain NMH04_12330 PF00684 DnaJ central domain NMH04_12335 PF00012 Hsp70 protein NMH04_12340 PF01025 GrpE NMH04_12345 PF01628 HrcA protein C terminal domain NMH04_12350 PF06969 HemN C-terminal domain NMH04_12350 PF04055 Radical SAM superfamily NMH04_12355 PF00679 Elongation factor G C-terminus NMH04_12355 PF00009 Elongation factor Tu GTP binding domain NMH04_12355 PF03144 Elongation factor Tu domain 2 NMH04_12355 PF06421 GTP-binding protein LepA C-terminus NMH04_12360 PF12438 Protein of unknown function (DUF3679) NMH04_12365 PF07454 Stage II sporulation protein P (SpoIIP) NMH04_12370 PF03418 Germination protease NMH04_12375 PF01649 Ribosomal protein S20 NMH04_12380 PF06144 DNA polymerase III, delta subunit NMH04_12385 PF14141 YqzM-like protein NMH04_12390 PF03772 Competence protein NMH04_12390 PF13567 Domain of unknown function (DUF4131) NMH04_12390 PF00753 Metallo-beta-lactamase superfamily NMH04_12395 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NMH04_12400 PF10531 SLBB domain NMH04_12405 PF03807 NADP oxidoreductase coenzyme F420-dependent NMH04_12405 PF14748 Pyrroline-5-carboxylate reductase dimerisation NMH04_12410 PF13649 Methyltransferase domain NMH04_12420 PF01966 HD domain NMH04_12425 PF01467 Cytidylyltransferase-like NMH04_12430 PF01985 CRS1 / YhbY (CRM) domain NMH04_12435 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NMH04_12435 PF01488 Shikimate / quinate 5-dehydrogenase NMH04_12435 PF08501 Shikimate dehydrogenase substrate binding domain NMH04_12440 PF01926 50S ribosome-binding GTPase NMH04_12450 PF08970 Sporulation inhibitor A NMH04_12460 PF00657 GDSL-like Lipase/Acylhydrolase NMH04_12465 PF01522 Polysaccharide deacetylase NMH04_12470 PF13176 Tetratricopeptide repeat NMH04_12470 PF18801 response regulator aspartate phosphatase H, N terminal NMH04_12475 PF04542 Sigma-70 region 2 NMH04_12475 PF04545 Sigma-70, region 4 NMH04_12490 PF13344 Haloacid dehalogenase-like hydrolase NMH04_12490 PF00293 NUDIX domain NMH04_12495 PF11738 Protein of unknown function (DUF3298) NMH04_12495 PF13739 Deacetylase PdaC NMH04_12495 PF01522 Polysaccharide deacetylase NMH04_12510 PF09221 Bacteriocin class IId cyclical uberolysin-like NMH04_12530 PF00005 ABC transporter NMH04_12550 PF00083 Sugar (and other) transporter NMH04_12555 PF11762 L-arabinose isomerase C-terminal domain NMH04_12555 PF02610 L-arabinose isomerase NMH04_12560 PF00596 Class II Aldolase and Adducin N-terminal domain NMH04_12570 PF00392 Bacterial regulatory proteins, gntR family NMH04_12580 PF01047 MarR family NMH04_12590 PF01380 SIS domain NMH04_12595 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NMH04_12600 PF01638 HxlR-like helix-turn-helix NMH04_12605 PF07859 alpha/beta hydrolase fold NMH04_12660 PF00440 Bacterial regulatory proteins, tetR family NMH04_12670 PF00905 Penicillin binding protein transpeptidase domain NMH04_12675 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NMH04_12675 PF02770 Acyl-CoA dehydrogenase, middle domain NMH04_12675 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NMH04_12680 PF00005 ABC transporter NMH04_12685 PF00497 Bacterial extracellular solute-binding proteins, family 3 NMH04_12690 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_12695 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_12700 PF05067 Manganese containing catalase NMH04_12705 PF00107 Zinc-binding dehydrogenase NMH04_12705 PF08240 Alcohol dehydrogenase GroES-like domain NMH04_12720 PF00465 Iron-containing alcohol dehydrogenase NMH04_12725 PF01235 Sodium:alanine symporter family NMH04_12730 PF03466 LysR substrate binding domain NMH04_12730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMH04_12735 PF08240 Alcohol dehydrogenase GroES-like domain NMH04_12735 PF00107 Zinc-binding dehydrogenase NMH04_12740 PF08241 Methyltransferase domain NMH04_12755 PF09501 Probable sporulation protein (Bac_small_yrzI) NMH04_12760 PF14143 YrhC-like protein NMH04_12765 PF01053 Cys/Met metabolism PLP-dependent enzyme NMH04_12770 PF00291 Pyridoxal-phosphate dependent enzyme NMH04_12775 PF01048 Phosphorylase superfamily NMH04_12780 PF13649 Methyltransferase domain NMH04_12785 PF10750 Protein of unknown function (DUF2536) NMH04_12790 PF07423 Domain of unknown function (DUF1510) NMH04_12795 PF03717 Penicillin-binding Protein dimerisation domain NMH04_12795 PF00905 Penicillin binding protein transpeptidase domain NMH04_12800 PF01272 Transcription elongation factor, GreA/GreB, C-term NMH04_12800 PF03449 Transcription elongation factor, N-terminal NMH04_12805 PF00485 Phosphoribulokinase / Uridine kinase family NMH04_12810 PF16325 Peptidase family U32 C-terminal domain NMH04_12810 PF01136 Peptidase family U32 NMH04_12815 PF01136 Peptidase family U32 NMH04_12820 PF01596 O-methyltransferase NMH04_12825 PF02618 YceG-like family NMH04_12830 PF02803 Thiolase, C-terminal domain NMH04_12830 PF00108 Thiolase, N-terminal domain NMH04_12835 PF00501 AMP-binding enzyme NMH04_12835 PF13193 AMP-binding enzyme C-terminal domain NMH04_12840 PF02632 BioY family NMH04_12845 PF06949 Protein of unknown function (DUF1292) NMH04_12850 PF03652 Holliday junction resolvase NMH04_12855 PF06135 IreB regulatory phosphoprotein NMH04_12860 PF02272 DHHA1 domain NMH04_12860 PF01411 tRNA synthetases class II (A) NMH04_12860 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NMH04_12865 PF01594 AI-2E family transporter NMH04_12870 PF00005 ABC transporter NMH04_12875 PF00497 Bacterial extracellular solute-binding proteins, family 3 NMH04_12880 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_12885 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_12900 PF05239 PRC-barrel domain NMH04_12905 PF14490 Helix-hairpin-helix containing domain NMH04_12905 PF13538 UvrD-like helicase C-terminal domain NMH04_12905 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain NMH04_12910 PF13181 Tetratricopeptide repeat NMH04_12910 PF07719 Tetratricopeptide repeat NMH04_12920 PF00266 Aminotransferase class-V NMH04_12925 PF02082 Transcriptional regulator NMH04_12930 PF16193 AAA C-terminal domain NMH04_12930 PF05496 Holliday junction DNA helicase RuvB P-loop domain NMH04_12930 PF12002 MgsA AAA+ ATPase C terminal NMH04_12935 PF00899 ThiF family NMH04_12945 PF01336 OB-fold nucleic acid binding domain NMH04_12945 PF00152 tRNA synthetases class II (D, K and N) NMH04_12945 PF02938 GAD domain NMH04_12950 PF13393 Histidyl-tRNA synthetase NMH04_12950 PF03129 Anticodon binding domain NMH04_12960 PF08239 Bacterial SH3 domain NMH04_12960 PF01520 N-acetylmuramoyl-L-alanine amidase NMH04_12965 PF02580 D-Tyr-tRNA(Tyr) deacylase NMH04_12970 PF13291 ACT domain NMH04_12970 PF04607 Region found in RelA / SpoT proteins NMH04_12970 PF02824 TGS domain NMH04_12975 PF00156 Phosphoribosyl transferase domain NMH04_12980 PF10141 Single-strand DNA-specific exonuclease, C terminal domain NMH04_12980 PF01368 DHH family NMH04_12980 PF02272 DHHA1 domain NMH04_12980 PF17768 RecJ OB domain NMH04_12985 PF06305 Lipopolysaccharide assembly protein A domain NMH04_12990 PF02080 TrkA-C domain NMH04_12995 PF02355 Protein export membrane protein NMH04_12995 PF07549 SecD/SecF GG Motif NMH04_13000 PF13797 Post-transcriptional regulator NMH04_13005 PF01943 Polysaccharide biosynthesis protein NMH04_13005 PF14667 Polysaccharide biosynthesis C-terminal domain NMH04_13010 PF04239 Protein of unknown function (DUF421) NMH04_13015 PF12670 Protein of unknown function (DUF3792) NMH04_13020 PF02699 Preprotein translocase subunit NMH04_13025 PF01702 Queuine tRNA-ribosyltransferase NMH04_13030 PF02547 Queuosine biosynthesis protein NMH04_13035 PF11146 Protein of unknown function (DUF2905) NMH04_13040 PF05496 Holliday junction DNA helicase RuvB P-loop domain NMH04_13040 PF17864 RuvB AAA lid domain NMH04_13040 PF05491 RuvB C-terminal winged helix domain NMH04_13045 PF07499 RuvA, C-terminal domain NMH04_13045 PF01330 RuvA N terminal domain NMH04_13050 PF08977 Bypass of Forespore C, N terminal NMH04_13050 PF08955 BofC C-terminal domain NMH04_13070 PF01964 Radical SAM ThiC family NMH04_13070 PF13667 ThiC-associated domain NMH04_13080 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) NMH04_13090 PF02445 Quinolinate synthetase A protein NMH04_13095 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain NMH04_13095 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NMH04_13100 PF00890 FAD binding domain NMH04_13100 PF02910 Fumarate reductase flavoprotein C-term NMH04_13105 PF00266 Aminotransferase class-V NMH04_13110 PF02829 3H domain NMH04_13110 PF08279 HTH domain NMH04_13115 PF01842 ACT domain NMH04_13115 PF00800 Prephenate dehydratase NMH04_13120 PF01842 ACT domain NMH04_13125 PF01926 50S ribosome-binding GTPase NMH04_13125 PF01018 GTP1/OBG NMH04_13125 PF09269 Domain of unknown function (DUF1967) NMH04_13130 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain NMH04_13130 PF14682 Sporulation initiation phospho-transferase B, C-terminal NMH04_13135 PF01016 Ribosomal L27 protein NMH04_13140 PF04327 Cysteine protease Prp NMH04_13145 PF00829 Ribosomal prokaryotic L21 protein NMH04_13150 PF02163 Peptidase family M50 NMH04_13155 PF01551 Peptidase family M23 NMH04_13160 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NMH04_13165 PF03775 Septum formation inhibitor MinC, C-terminal domain NMH04_13170 PF04093 rod shape-determining protein MreD NMH04_13175 PF04085 rod shape-determining protein MreC NMH04_13185 PF04002 RadC-like JAB domain NMH04_13190 PF02545 Maf-like protein NMH04_13200 PF06750 Bacterial Peptidase A24 N-terminal domain NMH04_13200 PF01478 Type IV leader peptidase family NMH04_13205 PF02875 Mur ligase family, glutamate ligase domain NMH04_13205 PF08245 Mur ligase middle domain NMH04_13210 PF08264 Anticodon-binding domain of tRNA NMH04_13210 PF00133 tRNA synthetases class I (I, L, M and V) NMH04_13210 PF10458 Valyl tRNA synthetase tRNA binding arm NMH04_13225 PF01476 LysM domain NMH04_13230 PF00202 Aminotransferase class-III NMH04_13235 PF00490 Delta-aminolevulinic acid dehydratase NMH04_13240 PF02602 Uroporphyrinogen-III synthase HemD NMH04_13245 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NMH04_13245 PF03900 Porphobilinogen deaminase, C-terminal domain NMH04_13250 PF01578 Cytochrome C assembly protein NMH04_13255 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain NMH04_13255 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NMH04_13255 PF01488 Shikimate / quinate 5-dehydrogenase NMH04_13280 PF01926 50S ribosome-binding GTPase NMH04_13285 PF00004 ATPase family associated with various cellular activities (AAA) NMH04_13285 PF05362 Lon protease (S16) C-terminal proteolytic domain NMH04_13285 PF02190 ATP-dependent protease La (LON) substrate-binding domain NMH04_13290 PF05362 Lon protease (S16) C-terminal proteolytic domain NMH04_13290 PF00004 ATPase family associated with various cellular activities (AAA) NMH04_13295 PF07724 AAA domain (Cdc48 subfamily) NMH04_13295 PF06689 ClpX C4-type zinc finger NMH04_13295 PF10431 C-terminal, D2-small domain, of ClpB protein NMH04_13300 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NMH04_13300 PF05698 Bacterial trigger factor protein (TF) C-terminus NMH04_13300 PF05697 Bacterial trigger factor protein (TF) NMH04_13310 PF00694 Aconitase C-terminal domain NMH04_13315 PF00330 Aconitase family (aconitate hydratase) NMH04_13320 PF00180 Isocitrate/isopropylmalate dehydrogenase NMH04_13325 PF00682 HMGL-like NMH04_13325 PF08502 LeuA allosteric (dimerisation) domain NMH04_13330 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain NMH04_13330 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain NMH04_13335 PF10369 Small subunit of acetolactate synthase NMH04_13335 PF01842 ACT domain NMH04_13340 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NMH04_13340 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NMH04_13340 PF00205 Thiamine pyrophosphate enzyme, central domain NMH04_13345 PF01063 Amino-transferase class IV NMH04_13350 PF10282 Lactonase, 7-bladed beta-propeller NMH04_13355 PF06803 Protein of unknown function (DUF1232) NMH04_13360 PF04914 DltD protein NMH04_13365 PF00550 Phosphopantetheine attachment site NMH04_13370 PF03062 MBOAT, membrane-bound O-acyltransferase family NMH04_13375 PF13193 AMP-binding enzyme C-terminal domain NMH04_13375 PF00501 AMP-binding enzyme NMH04_13380 PF12459 D-Ala-teichoic acid biosynthesis protein NMH04_13400 PF00145 C-5 cytosine-specific DNA methylase NMH04_13410 PF12850 Calcineurin-like phosphoesterase superfamily domain NMH04_13415 PF01725 Ham1 family NMH04_13420 PF01138 3' exoribonuclease family, domain 1 NMH04_13420 PF03725 3' exoribonuclease family, domain 2 NMH04_13425 PF10646 Sporulation and spore germination NMH04_13430 PF01177 Asp/Glu/Hydantoin racemase NMH04_13435 PF01047 MarR family NMH04_13440 PF00196 Bacterial regulatory proteins, luxR family NMH04_13445 PF03600 Citrate transporter NMH04_13450 PF03466 LysR substrate binding domain NMH04_13450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMH04_13455 PF04303 PrpF protein NMH04_13460 PF02237 Biotin protein ligase C terminal domain NMH04_13460 PF03099 Biotin/lipoate A/B protein ligase family NMH04_13465 PF03061 Thioesterase superfamily NMH04_13470 PF13085 2Fe-2S iron-sulfur cluster binding domain NMH04_13470 PF13183 4Fe-4S dicluster domain NMH04_13475 PF00890 FAD binding domain NMH04_13475 PF02910 Fumarate reductase flavoprotein C-term NMH04_13480 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NMH04_13485 PF10702 Protein of unknown function (DUF2507) NMH04_13490 PF00696 Amino acid kinase family NMH04_13490 PF13840 ACT domain NMH04_13490 PF01842 ACT domain NMH04_13495 PF08459 UvrC Helix-hairpin-helix N-terminal NMH04_13495 PF01541 GIY-YIG catalytic domain NMH04_13495 PF02151 UvrB/uvrC motif NMH04_13500 PF00085 Thioredoxin NMH04_13505 PF06964 Alpha-L-arabinofuranosidase C-terminal domain NMH04_13510 PF01012 Electron transfer flavoprotein domain NMH04_13510 PF00766 Electron transfer flavoprotein FAD-binding domain NMH04_13515 PF01012 Electron transfer flavoprotein domain NMH04_13520 PF00378 Enoyl-CoA hydratase/isomerase NMH04_13525 PF00440 Bacterial regulatory proteins, tetR family NMH04_13525 PF08359 YsiA-like protein, C-terminal region NMH04_13530 PF13193 AMP-binding enzyme C-terminal domain NMH04_13530 PF00501 AMP-binding enzyme NMH04_13540 PF03994 Domain of Unknown Function (DUF350) NMH04_13545 PF01713 Smr domain NMH04_13545 PF00488 MutS domain V NMH04_13550 PF14791 DNA polymerase beta thumb NMH04_13550 PF14716 Helix-hairpin-helix domain NMH04_13550 PF02811 PHP domain NMH04_13555 PF02674 Colicin V production protein NMH04_13560 PF05164 Cell division protein ZapA NMH04_13565 PF11858 Domain of unknown function (DUF3378) NMH04_13565 PF01351 Ribonuclease HII NMH04_13570 PF03484 tRNA synthetase B5 domain NMH04_13570 PF03483 B3/4 domain NMH04_13570 PF03147 Ferredoxin-fold anticodon binding domain NMH04_13570 PF01588 Putative tRNA binding domain NMH04_13570 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NMH04_13575 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NMH04_13575 PF01409 tRNA synthetases class II core domain (F) NMH04_13580 PF00588 SpoU rRNA Methylase family NMH04_13580 PF08032 RNA 2'-O ribose methyltransferase substrate binding NMH04_13585 PF14098 Small, acid-soluble spore protein I NMH04_13590 PF13722 5TM C-terminal transporter carbon starvation CstA NMH04_13590 PF02554 Carbon starvation protein CstA NMH04_13595 PF05343 M42 glutamyl aminopeptidase NMH04_13605 PF06961 Protein of unknown function (DUF1294) NMH04_13610 PF00453 Ribosomal protein L20 NMH04_13615 PF01632 Ribosomal protein L35 NMH04_13620 PF05198 Translation initiation factor IF-3, N-terminal domain NMH04_13620 PF00707 Translation initiation factor IF-3, C-terminal domain NMH04_13625 PF04172 LrgB-like family NMH04_13630 PF03788 LrgA family NMH04_13635 PF00072 Response regulator receiver domain NMH04_13635 PF04397 LytTr DNA-binding domain NMH04_13640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMH04_13640 PF07694 5TMR of 5TMR-LYT NMH04_13640 PF06580 Histidine kinase NMH04_13645 PF13419 Haloacid dehalogenase-like hydrolase NMH04_13650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMH04_13650 PF08447 PAS fold NMH04_13650 PF13426 PAS domain NMH04_13655 PF03129 Anticodon binding domain NMH04_13655 PF02824 TGS domain NMH04_13655 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NMH04_13655 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NMH04_13660 PF08812 YtxC-like family NMH04_13665 PF09335 SNARE associated Golgi protein NMH04_13670 PF01695 IstB-like ATP binding protein NMH04_13670 PF07319 Primosomal protein DnaI N-terminus NMH04_13675 PF07261 Replication initiation and membrane attachment NMH04_13680 PF03477 ATP cone domain NMH04_13690 PF02675 S-adenosylmethionine decarboxylase NMH04_13695 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NMH04_13695 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NMH04_13700 PF01121 Dephospho-CoA kinase NMH04_13705 PF02659 Putative manganese efflux pump NMH04_13710 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NMH04_13710 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NMH04_13710 PF06827 Zinc finger found in FPG and IleRS NMH04_13715 PF01367 5'-3' exonuclease, C-terminal SAM fold NMH04_13715 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NMH04_13715 PF00476 DNA polymerase family A NMH04_13720 PF16736 Single Cache-like NMH04_13720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMH04_13720 PF00989 PAS fold NMH04_13720 PF00512 His Kinase A (phospho-acceptor) domain NMH04_13725 PF00072 Response regulator receiver domain NMH04_13725 PF00486 Transcriptional regulatory protein, C terminal NMH04_13730 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NMH04_13730 PF00056 lactate/malate dehydrogenase, NAD binding domain NMH04_13735 PF00180 Isocitrate/isopropylmalate dehydrogenase NMH04_13740 PF00285 Citrate synthase, C-terminal domain NMH04_13745 PF04284 Protein of unknown function (DUF441) NMH04_13750 PF01594 AI-2E family transporter NMH04_13755 PF04186 FxsA cytoplasmic membrane protein NMH04_13760 PF00391 PEP-utilising enzyme, mobile domain NMH04_13760 PF00224 Pyruvate kinase, barrel domain NMH04_13760 PF02887 Pyruvate kinase, alpha/beta domain NMH04_13765 PF00365 Phosphofructokinase NMH04_13770 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NMH04_13775 PF01039 Carboxyl transferase domain NMH04_13775 PF17848 Acetyl-coA carboxylase zinc finger domain NMH04_13780 PF00390 Malic enzyme, N-terminal domain NMH04_13780 PF03949 Malic enzyme, NAD binding domain NMH04_13785 PF01336 OB-fold nucleic acid binding domain NMH04_13785 PF02811 PHP domain NMH04_13785 PF14579 Helix-hairpin-helix motif NMH04_13785 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NMH04_13785 PF07733 Bacterial DNA polymerase III alpha NTPase domain NMH04_13790 PF14034 Sporulation protein YtrH NMH04_13805 PF02272 DHHA1 domain NMH04_13805 PF01368 DHH family NMH04_13810 PF14007 YtpI-like protein NMH04_13815 PF00571 CBS domain NMH04_13815 PF00392 Bacterial regulatory proteins, gntR family NMH04_13815 PF03061 Thioesterase superfamily NMH04_13815 PF07085 DRTGG domain NMH04_13835 PF14698 Argininosuccinate lyase C-terminal NMH04_13835 PF00206 Lyase NMH04_13840 PF00764 Arginosuccinate synthase NMH04_13845 PF00994 Probable molybdopterin binding domain NMH04_13850 PF00871 Acetokinase family NMH04_13855 PF02384 N-6 DNA Methylase NMH04_13860 PF08534 Redoxin NMH04_13865 PF09579 Sporulation protein YtfJ (Spore_YtfJ) NMH04_13870 PF11167 Protein of unknown function (DUF2953) NMH04_13875 PF06271 RDD family NMH04_13880 PF01343 Peptidase family S49 NMH04_13885 PF01513 ATP-NAD kinase NMH04_13890 PF03880 DbpA RNA binding domain NMH04_13890 PF00270 DEAD/DEAH box helicase NMH04_13890 PF00271 Helicase conserved C-terminal domain NMH04_13895 PF00487 Fatty acid desaturase NMH04_13900 PF07730 Histidine kinase NMH04_13905 PF00196 Bacterial regulatory proteins, luxR family NMH04_13905 PF00072 Response regulator receiver domain NMH04_13910 PF01497 Periplasmic binding protein NMH04_13915 PF00486 Transcriptional regulatory protein, C terminal NMH04_13915 PF00072 Response regulator receiver domain NMH04_13920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMH04_13925 PF01098 Cell cycle protein NMH04_13930 PF03551 Transcriptional regulator PadR-like family NMH04_13935 PF00005 ABC transporter NMH04_13940 PF02687 FtsX-like permease family NMH04_13945 PF01979 Amidohydrolase family NMH04_13950 PF02525 Flavodoxin-like fold NMH04_13970 PF01810 LysE type translocator NMH04_13990 PF00501 AMP-binding enzyme NMH04_13990 PF13193 AMP-binding enzyme C-terminal domain NMH04_13995 PF00269 Small, acid-soluble spore proteins, alpha/beta type NMH04_14000 PF02926 THUMP domain NMH04_14000 PF02568 Thiamine biosynthesis protein (ThiI) NMH04_14005 PF00266 Aminotransferase class-V NMH04_14010 PF05525 Branched-chain amino acid transport protein NMH04_14015 PF05525 Branched-chain amino acid transport protein NMH04_14020 PF06160 Septation ring formation regulator, EzrA NMH04_14025 PF02811 PHP domain NMH04_14030 PF00440 Bacterial regulatory proteins, tetR family NMH04_14035 PF13185 GAF domain NMH04_14040 PF01479 S4 domain NMH04_14040 PF00163 Ribosomal protein S4/S9 N-terminal domain NMH04_14055 PF00857 Isochorismatase family NMH04_14065 PF01674 Lipase (class 2) NMH04_14070 PF03992 Antibiotic biosynthesis monooxygenase NMH04_14075 PF00579 tRNA synthetases class I (W and Y) NMH04_14075 PF01479 S4 domain NMH04_14080 PF13193 AMP-binding enzyme C-terminal domain NMH04_14080 PF00501 AMP-binding enzyme NMH04_14085 PF00583 Acetyltransferase (GNAT) family NMH04_14090 PF00571 CBS domain NMH04_14095 PF00850 Histone deacetylase domain NMH04_14100 PF00356 Bacterial regulatory proteins, lacI family NMH04_14105 PF01817 Chorismate mutase type II NMH04_14105 PF00793 DAHP synthetase I family NMH04_14110 PF11009 Protein of unknown function (DUF2847) NMH04_14115 PF12732 YtxH-like protein NMH04_14120 PF06103 Bacterial protein of unknown function (DUF948) NMH04_14125 PF01225 Mur ligase family, catalytic domain NMH04_14125 PF02875 Mur ligase family, glutamate ligase domain NMH04_14125 PF08245 Mur ligase middle domain NMH04_14130 PF09397 Ftsk gamma domain NMH04_14130 PF17854 FtsK alpha domain NMH04_14130 PF01580 FtsK/SpoIIIE family NMH04_14135 PF14794 Domain of unknown function (DUF4479) NMH04_14135 PF01588 Putative tRNA binding domain NMH04_14140 PF07285 Protein of unknown function (DUF1444) NMH04_14145 PF00085 Thioredoxin NMH04_14155 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ NMH04_14160 PF05343 M42 glutamyl aminopeptidase NMH04_14165 PF03413 Peptidase propeptide and YPEB domain NMH04_14170 PF00390 Malic enzyme, N-terminal domain NMH04_14170 PF03949 Malic enzyme, NAD binding domain NMH04_14175 PF00753 Metallo-beta-lactamase superfamily NMH04_14180 PF02390 Putative methyltransferase NMH04_14185 PF14165 YtzH-like protein NMH04_14190 PF01636 Phosphotransferase enzyme family NMH04_14195 PF00781 Diacylglycerol kinase catalytic domain NMH04_14210 PF00291 Pyridoxal-phosphate dependent enzyme NMH04_14215 PF03575 Peptidase family S51 NMH04_14220 PF01546 Peptidase family M20/M25/M40 NMH04_14225 PF00860 Permease family NMH04_14230 PF08220 DeoR-like helix-turn-helix domain NMH04_14235 PF00849 RNA pseudouridylate synthase NMH04_14235 PF01479 S4 domain NMH04_14240 PF14667 Polysaccharide biosynthesis C-terminal domain NMH04_14240 PF01943 Polysaccharide biosynthesis protein NMH04_14255 PF02028 BCCT, betaine/carnitine/choline family transporter NMH04_14260 PF03691 Uncharacterised protein family (UPF0167) NMH04_14265 PF10957 Sporulation protein Cse60 NMH04_14270 PF00581 Rhodanese-like domain NMH04_14275 PF04854 Protein of unknown function, DUF624 NMH04_14280 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NMH04_14280 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NMH04_14290 PF07470 Glycosyl Hydrolase Family 88 NMH04_14295 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_14300 PF17853 GGDEF-like domain NMH04_14300 PF12833 Helix-turn-helix domain NMH04_14305 PF01638 HxlR-like helix-turn-helix NMH04_14310 PF07690 Major Facilitator Superfamily NMH04_14315 PF00248 Aldo/keto reductase family NMH04_14320 PF13416 Bacterial extracellular solute-binding protein NMH04_14325 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_14330 PF01370 NAD dependent epimerase/dehydratase family NMH04_14335 PF01738 Dienelactone hydrolase family NMH04_14340 PF08264 Anticodon-binding domain of tRNA NMH04_14340 PF00133 tRNA synthetases class I (I, L, M and V) NMH04_14340 PF13603 Leucyl-tRNA synthetase, Domain 2 NMH04_14340 PF09334 tRNA synthetases class I (M) NMH04_14345 PF14074 Protein of unknown function (DUF4257) NMH04_14360 PF04791 LMBR1-like membrane protein NMH04_14365 PF02687 FtsX-like permease family NMH04_14365 PF12704 MacB-like periplasmic core domain NMH04_14370 PF00005 ABC transporter NMH04_14380 PF00005 ABC transporter NMH04_14385 PF00392 Bacterial regulatory proteins, gntR family NMH04_14400 PF10732 Protein of unknown function (DUF2524) NMH04_14405 PF04055 Radical SAM superfamily NMH04_14405 PF16199 Radical_SAM C-terminal domain NMH04_14410 PF06962 Putative rRNA methylase NMH04_14415 PF07070 SpoOM protein NMH04_14420 PF10776 Protein of unknown function (DUF2600) NMH04_14425 PF12146 Serine aminopeptidase, S33 NMH04_14430 PF00132 Bacterial transferase hexapeptide (six repeats) NMH04_14435 PF00733 Asparagine synthase NMH04_14435 PF13537 Glutamine amidotransferase domain NMH04_14440 PF02773 S-adenosylmethionine synthetase, C-terminal domain NMH04_14440 PF02772 S-adenosylmethionine synthetase, central domain NMH04_14440 PF00438 S-adenosylmethionine synthetase, N-terminal domain NMH04_14445 PF01293 Phosphoenolpyruvate carboxykinase NMH04_14450 PF10763 Protein of unknown function (DUF2584) NMH04_14455 PF00326 Prolyl oligopeptidase family NMH04_14460 PF01593 Flavin containing amine oxidoreductase NMH04_14465 PF00535 Glycosyl transferase family 2 NMH04_14485 PF00005 ABC transporter NMH04_14490 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_14495 PF00293 NUDIX domain NMH04_14500 PF02342 TerD domain NMH04_14515 PF05105 Bacteriophage holin family NMH04_14525 PF00210 Ferritin-like domain NMH04_14535 PF13115 YtkA-like NMH04_14540 PF02664 S-Ribosylhomocysteinase (LuxS) NMH04_14545 PF01809 Putative membrane protein insertion efficiency factor NMH04_14550 PF00484 Carbonic anhydrase NMH04_14555 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment NMH04_14555 PF01297 Zinc-uptake complex component A periplasmic NMH04_14560 PF01197 Ribosomal protein L31 NMH04_14565 PF01654 Cytochrome bd terminal oxidase subunit I NMH04_14570 PF02322 Cytochrome bd terminal oxidase subunit II NMH04_14575 PF07561 Domain of Unknown Function (DUF1540) NMH04_14585 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NMH04_14585 PF13378 Enolase C-terminal domain-like NMH04_14590 PF13193 AMP-binding enzyme C-terminal domain NMH04_14590 PF00501 AMP-binding enzyme NMH04_14595 PF00378 Enoyl-CoA hydratase/isomerase NMH04_14600 PF00561 alpha/beta hydrolase fold NMH04_14605 PF16582 Middle domain of thiamine pyrophosphate NMH04_14605 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NMH04_14605 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NMH04_14610 PF00425 chorismate binding enzyme NMH04_14615 PF01040 UbiA prenyltransferase family NMH04_14620 PF01258 Prokaryotic dksA/traR C4-type zinc finger NMH04_14625 PF03073 TspO/MBR family NMH04_14750 PF09515 Thiamine transporter protein (Thia_YuaJ) NMH04_14755 PF00583 Acetyltransferase (GNAT) family NMH04_14760 PF06803 Protein of unknown function (DUF1232) NMH04_14765 PF01098 Cell cycle protein NMH04_14770 PF01098 Cell cycle protein NMH04_14775 PF15975 Flotillin NMH04_14775 PF01145 SPFH domain / Band 7 family NMH04_14785 PF12867 DinB superfamily NMH04_14790 PF00465 Iron-containing alcohol dehydrogenase NMH04_14795 PF00171 Aldehyde dehydrogenase family NMH04_14815 PF01471 Putative peptidoglycan binding domain NMH04_14815 PF01510 N-acetylmuramoyl-L-alanine amidase NMH04_14820 PF04688 SPP1 phage holin NMH04_14825 PF10960 BhlA holin family NMH04_14850 PF09693 Phage uncharacterised protein (Phage_XkdX) NMH04_14855 PF09636 XkdW protein NMH04_14870 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) NMH04_14875 PF04865 Baseplate J-like protein NMH04_14880 PF10934 Protein of unknown function (DUF2634) NMH04_14885 PF10844 Protein of unknown function (DUF2577) NMH04_14895 PF01476 LysM domain NMH04_14900 PF01464 Transglycosylase SLT domain NMH04_14900 PF01464 Transglycosylase SLT domain NMH04_14910 PF08890 Phage XkdN-like tail assembly chaperone protein, TAC NMH04_14920 PF09393 Phage tail tube protein NMH04_14925 PF17482 Phage tail sheath C-terminal domain NMH04_14925 PF04984 Phage tail sheath protein subtilisin-like domain NMH04_14925 PF17481 Phage tail sheath protein beta-sandwich domain NMH04_14940 PF04883 Bacteriophage HK97-gp10, putative tail-component NMH04_14945 PF12206 Domain of unknown function (DUF3599) NMH04_14950 PF11436 Protein of unknown function (DUF3199) NMH04_14955 PF05065 Phage capsid family NMH04_14960 PF14550 Putative phage serine protease XkdF NMH04_14965 PF04860 Phage portal protein NMH04_14970 PF17288 Terminase RNAseH like domain NMH04_14970 PF04466 Phage terminase large subunit NMH04_14975 PF10668 Phage terminase small subunit NMH04_14980 PF08281 Sigma-70, region 4 NMH04_14985 PF17356 Phage-like element PBSX protein XtrA NMH04_14990 PF05866 Endodeoxyribonuclease RusA NMH04_15010 PF01381 Helix-turn-helix NMH04_15020 PF06968 Biotin and Thiamin Synthesis associated domain NMH04_15020 PF04055 Radical SAM superfamily NMH04_15030 PF02673 Bacitracin resistance protein BacA NMH04_15035 PF01594 AI-2E family transporter NMH04_15045 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NMH04_15045 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NMH04_15050 PF01965 DJ-1/PfpI family NMH04_15055 PF00672 HAMP domain NMH04_15055 PF02743 Cache domain NMH04_15055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMH04_15060 PF02743 Cache domain NMH04_15060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMH04_15060 PF00672 HAMP domain NMH04_15065 PF00672 HAMP domain NMH04_15065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMH04_15065 PF02743 Cache domain NMH04_15070 PF02743 Cache domain NMH04_15070 PF00672 HAMP domain NMH04_15070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMH04_15085 PF03060 Nitronate monooxygenase NMH04_15090 PF01894 Uncharacterised protein family UPF0047 NMH04_15095 PF01595 Cyclin M transmembrane N-terminal domain NMH04_15095 PF00571 CBS domain NMH04_15095 PF03471 Transporter associated domain NMH04_15100 PF04298 Putative neutral zinc metallopeptidase NMH04_15110 PF02254 TrkA-N domain NMH04_15110 PF07885 Ion channel NMH04_15115 PF08868 YugN-like family NMH04_15125 PF00342 Phosphoglucose isomerase NMH04_15130 PF00465 Iron-containing alcohol dehydrogenase NMH04_15135 PF00465 Iron-containing alcohol dehydrogenase NMH04_15140 PF04070 Domain of unknown function (DUF378) NMH04_15145 PF00575 S1 RNA binding domain NMH04_15150 PF00155 Aminotransferase class I and II NMH04_15155 PF01037 Lrp/AsnC ligand binding domain NMH04_15160 PF00561 alpha/beta hydrolase fold NMH04_15160 PF08386 TAP-like protein NMH04_15165 PF08958 Domain of unknown function (DUF1871) NMH04_15170 PF00155 Aminotransferase class I and II NMH04_15175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMH04_15175 PF00512 His Kinase A (phospho-acceptor) domain NMH04_15185 PF08810 Kinase associated protein B NMH04_15190 PF00929 Exonuclease NMH04_15195 PF07690 Major Facilitator Superfamily NMH04_15200 PF00912 Transglycosylase NMH04_15200 PF00905 Penicillin binding protein transpeptidase domain NMH04_15205 PF04134 Protein of unknown function, DUF393 NMH04_15210 PF17328 Family of unknown function (DUF5366) NMH04_15215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMH04_15215 PF00989 PAS fold NMH04_15215 PF17203 Single cache domain 3 NMH04_15215 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain NMH04_15220 PF00072 Response regulator receiver domain NMH04_15225 PF02608 ABC transporter substrate-binding protein PnrA-like NMH04_15230 PF00005 ABC transporter NMH04_15235 PF02653 Branched-chain amino acid transport system / permease component NMH04_15240 PF02653 Branched-chain amino acid transport system / permease component NMH04_15245 PF03390 2-hydroxycarboxylate transporter family NMH04_15255 PF13244 Domain of unknown function (DUF4040) NMH04_15255 PF00361 Proton-conducting membrane transporter NMH04_15255 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NMH04_15260 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter NMH04_15265 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NMH04_15270 PF00361 Proton-conducting membrane transporter NMH04_15275 PF01899 Na+/H+ ion antiporter subunit NMH04_15280 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) NMH04_15285 PF03334 Na+/H+ antiporter subunit NMH04_15290 PF03061 Thioesterase superfamily NMH04_15295 PF00196 Bacterial regulatory proteins, luxR family NMH04_15295 PF00072 Response regulator receiver domain NMH04_15300 PF07730 Histidine kinase NMH04_15300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMH04_15310 PF00348 Polyprenyl synthetase NMH04_15315 PF08181 DegQ (SacQ) family NMH04_15325 PF00563 EAL domain NMH04_15325 PF08668 HDOD domain NMH04_15330 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NMH04_15330 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain NMH04_15330 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NMH04_15335 PF00857 Isochorismatase family NMH04_15340 PF07997 Protein of unknown function (DUF1694) NMH04_15345 PF14166 YueH-like protein NMH04_15350 PF10676 Spore germination protein gerPA/gerPF NMH04_15355 PF10676 Spore germination protein gerPA/gerPF NMH04_15360 PF01594 AI-2E family transporter NMH04_15365 PF10842 Protein of unknown function (DUF2642) NMH04_15375 PF01966 HD domain NMH04_15380 PF00106 short chain dehydrogenase NMH04_15385 PF17355 Family of unknown function (DUF5383) NMH04_15395 PF01580 FtsK/SpoIIIE family NMH04_15395 PF12538 DNA transporter NMH04_15400 PF10140 WXG100 protein secretion system (Wss), protein YukC NMH04_15405 PF08817 WXG100 protein secretion system (Wss), protein YukD NMH04_15410 PF06013 Proteins of 100 residues with WXG NMH04_15415 PF06018 CodY GAF-like domain NMH04_15415 PF17853 GGDEF-like domain NMH04_15415 PF13556 PucR C-terminal helix-turn-helix domain NMH04_15420 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NMH04_15420 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NMH04_15425 PF02632 BioY family NMH04_15430 PF13726 Na+-H+ antiporter family NMH04_15430 PF03553 Na+/H+ antiporter family NMH04_15435 PF00883 Cytosol aminopeptidase family, catalytic domain NMH04_15435 PF02789 Cytosol aminopeptidase family, N-terminal domain NMH04_15440 PF02681 Divergent PAP2 family NMH04_15445 PF06725 3D domain NMH04_15450 PF14068 Putative membrane protein NMH04_15455 PF17302 Family of unknown function (DUF5351) NMH04_15460 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMH04_15465 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMH04_15480 PF01521 Iron-sulphur cluster biosynthesis NMH04_15485 PF01678 Diaminopimelate epimerase NMH04_15490 PF07293 Protein of unknown function (DUF1450) NMH04_15495 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMH04_15505 PF07315 Protein of unknown function (DUF1462) NMH04_15515 PF00326 Prolyl oligopeptidase family NMH04_15515 PF07676 WD40-like Beta Propeller Repeat NMH04_15520 PF08544 GHMP kinases C terminal NMH04_15520 PF00288 GHMP kinases N terminal domain NMH04_15525 PF00291 Pyridoxal-phosphate dependent enzyme NMH04_15530 PF03447 Homoserine dehydrogenase, NAD binding domain NMH04_15530 PF00742 Homoserine dehydrogenase NMH04_15530 PF01842 ACT domain NMH04_15535 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NMH04_15535 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NMH04_15545 PF04608 Phosphatidylglycerophosphatase A NMH04_15550 PF13344 Haloacid dehalogenase-like hydrolase NMH04_15555 PF01934 Protein of unknown function DUF86 NMH04_15560 PF06265 Protein of unknown function (DUF1027) NMH04_15565 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) NMH04_15570 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family NMH04_15570 PF04055 Radical SAM superfamily NMH04_15575 PF01551 Peptidase family M23 NMH04_15585 PF10903 Protein of unknown function (DUF2691) NMH04_15590 PF09560 Sporulation protein YunB (Spo_YunB) NMH04_15595 PF08827 Domain of unknown function (DUF1805) NMH04_15600 PF02872 5'-nucleotidase, C-terminal domain NMH04_15605 PF01904 Protein of unknown function DUF72 NMH04_15610 PF07905 Purine catabolism regulatory protein-like family NMH04_15610 PF17853 GGDEF-like domain NMH04_15610 PF13556 PucR C-terminal helix-turn-helix domain NMH04_15615 PF00190 Cupin NMH04_15620 PF07690 Major Facilitator Superfamily NMH04_15625 PF00266 Aminotransferase class-V NMH04_15630 PF04231 Endonuclease I NMH04_15645 PF01032 FecCD transport family NMH04_15650 PF01032 FecCD transport family NMH04_15655 PF01497 Periplasmic binding protein NMH04_15665 PF07859 alpha/beta hydrolase fold NMH04_15670 PF06146 Phosphate-starvation-inducible E NMH04_15675 PF00512 His Kinase A (phospho-acceptor) domain NMH04_15680 PF00486 Transcriptional regulatory protein, C terminal NMH04_15680 PF00072 Response regulator receiver domain NMH04_15685 PF04235 Protein of unknown function (DUF418) NMH04_15695 PF02525 Flavodoxin-like fold NMH04_15700 PF01370 NAD dependent epimerase/dehydratase family NMH04_15705 PF18665 Tetracyclin repressor-like, C-terminal domain NMH04_15705 PF00440 Bacterial regulatory proteins, tetR family NMH04_15710 PF01458 Uncharacterized protein family (UPF0051) NMH04_15715 PF01592 NifU-like N terminal domain NMH04_15720 PF00266 Aminotransferase class-V NMH04_15725 PF01458 Uncharacterized protein family (UPF0051) NMH04_15730 PF00005 ABC transporter NMH04_15740 PF02627 Carboxymuconolactone decarboxylase family NMH04_15745 PF03180 NLPA lipoprotein NMH04_15750 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_15755 PF00005 ABC transporter NMH04_15755 PF09383 NIL domain NMH04_15760 PF02036 SCP-2 sterol transfer family NMH04_15765 PF00085 Thioredoxin NMH04_15770 PF01751 Toprim domain NMH04_15775 PF10830 Protein of unknown function (DUF2553) NMH04_15780 PF01597 Glycine cleavage H-protein NMH04_15785 PF03960 ArsC family NMH04_15790 PF02770 Acyl-CoA dehydrogenase, middle domain NMH04_15790 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NMH04_15790 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NMH04_15795 PF02803 Thiolase, C-terminal domain NMH04_15795 PF00108 Thiolase, N-terminal domain NMH04_15800 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NMH04_15800 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NMH04_15800 PF00378 Enoyl-CoA hydratase/isomerase NMH04_15805 PF14115 YuzL-like protein NMH04_15815 PF07875 Coat F domain NMH04_15820 PF10835 Protein of unknown function (DUF2573) NMH04_15825 PF00005 ABC transporter NMH04_15835 PF00106 short chain dehydrogenase NMH04_15840 PF13180 PDZ domain NMH04_15845 PF00072 Response regulator receiver domain NMH04_15845 PF00486 Transcriptional regulatory protein, C terminal NMH04_15850 PF00672 HAMP domain NMH04_15850 PF00512 His Kinase A (phospho-acceptor) domain NMH04_15850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMH04_15860 PF00440 Bacterial regulatory proteins, tetR family NMH04_15865 PF00206 Lyase NMH04_15865 PF10415 Fumarase C C-terminus NMH04_15870 PF13113 Protein of unknown function (DUF3970) NMH04_15875 PF03323 Bacillus/Clostridium GerA spore germination protein NMH04_15880 PF03845 Spore germination protein NMH04_15885 PF05504 Spore germination B3/ GerAC like, C-terminal NMH04_15895 PF00196 Bacterial regulatory proteins, luxR family NMH04_15895 PF00072 Response regulator receiver domain NMH04_15900 PF00672 HAMP domain NMH04_15900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMH04_15900 PF07730 Histidine kinase NMH04_15905 PF09922 Cell wall-active antibiotics response 4TMS YvqF NMH04_15915 PF04012 PspA/IM30 family NMH04_15925 PF01923 Cobalamin adenosyltransferase NMH04_15930 PF00005 ABC transporter NMH04_15935 PF01032 FecCD transport family NMH04_15940 PF01497 Periplasmic binding protein NMH04_15945 PF00295 Glycosyl hydrolases family 28 NMH04_15950 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus NMH04_15950 PF08666 SAF domain NMH04_15955 PF01232 Mannitol dehydrogenase Rossmann domain NMH04_15955 PF08125 Mannitol dehydrogenase C-terminal domain NMH04_15960 PF00356 Bacterial regulatory proteins, lacI family NMH04_15965 PF02614 Glucuronate isomerase NMH04_15970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMH04_15970 PF00512 His Kinase A (phospho-acceptor) domain NMH04_15975 PF00486 Transcriptional regulatory protein, C terminal NMH04_15975 PF00072 Response regulator receiver domain NMH04_15980 PF00005 ABC transporter NMH04_15985 PF01032 FecCD transport family NMH04_15990 PF01032 FecCD transport family NMH04_15995 PF01497 Periplasmic binding protein NMH04_16000 PF13520 Amino acid permease NMH04_16005 PF09575 Small spore protein J (Spore_SspJ) NMH04_16015 PF04307 LexA-binding, inner membrane-associated putative hydrolase NMH04_16020 PF00884 Sulfatase NMH04_16030 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_16035 PF00248 Aldo/keto reductase family NMH04_16040 PF00480 ROK family NMH04_16045 PF00999 Sodium/hydrogen exchanger family NMH04_16050 PF03458 UPF0126 domain NMH04_16055 PF02600 Disulfide bond formation protein DsbB NMH04_16060 PF13462 Thioredoxin NMH04_16065 PF00403 Heavy-metal-associated domain NMH04_16070 PF00005 ABC transporter NMH04_16075 PF00950 ABC 3 transport family NMH04_16080 PF01297 Zinc-uptake complex component A periplasmic NMH04_16090 PF00440 Bacterial regulatory proteins, tetR family NMH04_16090 PF13977 BetI-type transcriptional repressor, C-terminal NMH04_16095 PF00072 Response regulator receiver domain NMH04_16095 PF08664 YcbB domain NMH04_16100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMH04_16105 PF10415 Fumarase C C-terminus NMH04_16105 PF00206 Lyase NMH04_16110 PF00375 Sodium:dicarboxylate symporter family NMH04_16120 PF00403 Heavy-metal-associated domain NMH04_16125 PF00403 Heavy-metal-associated domain NMH04_16130 PF02583 Metal-sensitive transcriptional repressor NMH04_16140 PF00990 Diguanylate cyclase, GGDEF domain NMH04_16140 PF00072 Response regulator receiver domain NMH04_16150 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase NMH04_16150 PF00535 Glycosyl transferase family 2 NMH04_16160 PF01668 SmpB protein NMH04_16165 PF17876 Cold shock domain NMH04_16165 PF08206 Ribonuclease B OB domain NMH04_16165 PF00773 RNB domain NMH04_16165 PF00575 S1 RNA binding domain NMH04_16170 PF12146 Serine aminopeptidase, S33 NMH04_16175 PF03840 Preprotein translocase SecG subunit NMH04_16180 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin NMH04_16180 PF18277 AbrB C-terminal domain NMH04_16185 PF01381 Helix-turn-helix NMH04_16200 PF01638 HxlR-like helix-turn-helix NMH04_16205 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_16210 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NMH04_16215 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_16220 PF00005 ABC transporter NMH04_16220 PF00571 CBS domain NMH04_16225 PF12802 MarR family NMH04_16230 PF01914 MarC family integral membrane protein NMH04_16240 PF00583 Acetyltransferase (GNAT) family NMH04_16260 PF00005 ABC transporter NMH04_16270 PF00113 Enolase, C-terminal TIM barrel domain NMH04_16270 PF03952 Enolase, N-terminal domain NMH04_16275 PF01676 Metalloenzyme superfamily NMH04_16275 PF06415 BPG-independent PGAM N-terminus (iPGM_N) NMH04_16280 PF00121 Triosephosphate isomerase NMH04_16285 PF00162 Phosphoglycerate kinase NMH04_16290 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NMH04_16290 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NMH04_16295 PF04198 Putative sugar-binding domain NMH04_16300 PF00324 Amino acid permease NMH04_16305 PF00202 Aminotransferase class-III NMH04_16310 PF02954 Bacterial regulatory protein, Fis family NMH04_16310 PF13426 PAS domain NMH04_16310 PF00158 Sigma-54 interaction domain NMH04_16315 PF00392 Bacterial regulatory proteins, gntR family NMH04_16315 PF07729 FCD domain NMH04_16320 PF00309 Sigma-54 factor, Activator interacting domain (AID) NMH04_16320 PF04963 Sigma-54 factor, core binding domain NMH04_16320 PF04552 Sigma-54, DNA binding domain NMH04_16325 PF09628 YvfG protein NMH04_16330 PF01554 MatE NMH04_16335 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NMH04_16335 PF00005 ABC transporter NMH04_16340 PF00005 ABC transporter NMH04_16340 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NMH04_16345 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_16350 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_16355 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NMH04_16360 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NMH04_16365 PF00132 Bacterial transferase hexapeptide (six repeats) NMH04_16365 PF17836 PglD N-terminal domain NMH04_16370 PF02397 Bacterial sugar transferase NMH04_16375 PF14667 Polysaccharide biosynthesis C-terminal domain NMH04_16375 PF01943 Polysaccharide biosynthesis protein NMH04_16380 PF04230 Polysaccharide pyruvyl transferase NMH04_16385 PF00535 Glycosyl transferase family 2 NMH04_16395 PF13439 Glycosyltransferase Family 4 NMH04_16395 PF00534 Glycosyl transferases group 1 NMH04_16400 PF00535 Glycosyl transferase family 2 NMH04_16405 PF13439 Glycosyltransferase Family 4 NMH04_16405 PF00534 Glycosyl transferases group 1 NMH04_16410 PF02719 Polysaccharide biosynthesis protein NMH04_16415 PF13614 AAA domain NMH04_16420 PF02706 Chain length determinant protein NMH04_16425 PF01381 Helix-turn-helix NMH04_16425 PF08671 Anti-repressor SinI NMH04_16435 PF01497 Periplasmic binding protein NMH04_16440 PF01032 FecCD transport family NMH04_16445 PF01032 FecCD transport family NMH04_16450 PF13739 Deacetylase PdaC NMH04_16450 PF01522 Polysaccharide deacetylase NMH04_16450 PF11738 Protein of unknown function (DUF3298) NMH04_16455 PF12848 ABC transporter NMH04_16455 PF00005 ABC transporter NMH04_16460 PF00005 ABC transporter NMH04_16465 PF00005 ABC transporter NMH04_16470 PF12911 N-terminal TM domain of oligopeptide transport permease C NMH04_16470 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_16475 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_16480 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NMH04_16485 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase NMH04_16490 PF01497 Periplasmic binding protein NMH04_16505 PF00574 Clp protease NMH04_16510 PF03641 Possible lysine decarboxylase NMH04_16515 PF03819 MazG nucleotide pyrophosphohydrolase domain NMH04_16520 PF00916 Sulfate permease family NMH04_16520 PF01740 STAS domain NMH04_16525 PF00484 Carbonic anhydrase NMH04_16530 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NMH04_16530 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NMH04_16535 PF00545 ribonuclease NMH04_16540 PF00375 Sodium:dicarboxylate symporter family NMH04_16545 PF00266 Aminotransferase class-V NMH04_16550 PF01418 Helix-turn-helix domain, rpiR family NMH04_16550 PF01380 SIS domain NMH04_16555 PF00797 N-acetyltransferase NMH04_16560 PF00381 PTS HPr component phosphorylation site NMH04_16565 PF10298 WhiA N-terminal LAGLIDADG-like domain NMH04_16565 PF14527 WhiA LAGLIDADG-like domain NMH04_16565 PF02650 WhiA C-terminal HTH domain NMH04_16570 PF01933 Uncharacterised protein family UPF0052 NMH04_16575 PF03668 P-loop ATPase protein family NMH04_16580 PF00293 NUDIX domain NMH04_16585 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMH04_16590 PF00877 NlpC/P60 family NMH04_16600 PF01502 Phosphoribosyl-AMP cyclohydrolase NMH04_16600 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase NMH04_16605 PF00977 Histidine biosynthesis protein NMH04_16610 PF00977 Histidine biosynthesis protein NMH04_16615 PF00117 Glutamine amidotransferase class-I NMH04_16620 PF00475 Imidazoleglycerol-phosphate dehydratase NMH04_16625 PF00815 Histidinol dehydrogenase NMH04_16630 PF01634 ATP phosphoribosyltransferase NMH04_16635 PF13393 Histidyl-tRNA synthetase NMH04_16640 PF13529 Peptidase_C39 like family NMH04_16645 PF13460 NAD(P)H-binding NMH04_16650 PF02082 Transcriptional regulator NMH04_16655 PF14602 Hexapeptide repeat of succinyl-transferase NMH04_16660 PF13419 Haloacid dehalogenase-like hydrolase NMH04_16665 PF07670 Nucleoside recognition NMH04_16670 PF01790 Prolipoprotein diacylglyceryl transferase NMH04_16675 PF07475 HPr Serine kinase C-terminal domain NMH04_16675 PF02603 HPr Serine kinase N terminus NMH04_16680 PF01979 Amidohydrolase family NMH04_16685 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase NMH04_16690 PF07702 UTRA domain NMH04_16690 PF00392 Bacterial regulatory proteins, gntR family NMH04_16695 PF00149 Calcineurin-like phosphoesterase NMH04_16700 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV NMH04_16705 PF04024 PspC domain NMH04_16710 PF13349 Putative adhesin NMH04_16725 PF00005 ABC transporter NMH04_16725 PF17755 UvrA DNA-binding domain NMH04_16725 PF17760 UvrA interaction domain NMH04_16730 PF00271 Helicase conserved C-terminal domain NMH04_16730 PF04851 Type III restriction enzyme, res subunit NMH04_16730 PF12344 Ultra-violet resistance protein B NMH04_16730 PF17757 UvrB interaction domain NMH04_16730 PF02151 UvrB/uvrC motif NMH04_16735 PF09964 Uncharacterized protein conserved in bacteria (DUF2198) NMH04_16740 PF00391 PEP-utilising enzyme, mobile domain NMH04_16740 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NMH04_16745 PF00440 Bacterial regulatory proteins, tetR family NMH04_16750 PF07690 Major Facilitator Superfamily NMH04_16760 PF00072 Response regulator receiver domain NMH04_16760 PF00486 Transcriptional regulatory protein, C terminal NMH04_16765 PF00989 PAS fold NMH04_16765 PF00512 His Kinase A (phospho-acceptor) domain NMH04_16765 PF18698 Histidine kinase sensor domain NMH04_16765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMH04_16765 PF00672 HAMP domain NMH04_16770 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase NMH04_16775 PF00535 Glycosyl transferase family 2 NMH04_16780 PF00324 Amino acid permease NMH04_16785 PF00881 Nitroreductase family NMH04_16790 PF01638 HxlR-like helix-turn-helix NMH04_16795 PF17820 PDZ domain NMH04_16800 PF17423 Swarming motility protein NMH04_16805 PF17820 PDZ domain NMH04_16805 PF03572 Peptidase family S41 NMH04_16805 PF01471 Putative peptidoglycan binding domain NMH04_16810 PF01925 Sulfite exporter TauE/SafE NMH04_16815 PF00877 NlpC/P60 family NMH04_16820 PF18075 FtsX extracellular domain NMH04_16820 PF02687 FtsX-like permease family NMH04_16825 PF00005 ABC transporter NMH04_16830 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NMH04_16835 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 NMH04_16835 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NMH04_16855 PF07517 SecA DEAD-like domain NMH04_16855 PF01043 SecA preprotein cross-linking domain NMH04_16855 PF07516 SecA Wing and Scaffold domain NMH04_16855 PF02810 SEC-C motif NMH04_16860 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus NMH04_16860 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NMH04_16865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMH04_16865 PF00672 HAMP domain NMH04_16865 PF02743 Cache domain NMH04_16880 PF02561 Flagellar protein FliS NMH04_16885 PF02465 Flagellar hook-associated protein 2 N-terminus NMH04_16885 PF07195 Flagellar hook-associated protein 2 C-terminus NMH04_16885 PF07196 Flagellin hook IN motif NMH04_16890 PF03646 FlaG protein NMH04_16895 PF02599 Global regulator protein family NMH04_16900 PF02623 FliW protein NMH04_16910 PF00700 Bacterial flagellin C-terminal helical region NMH04_16910 PF00669 Bacterial flagellin N-terminal helical region NMH04_16915 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NMH04_16915 PF00460 Flagella basal body rod protein NMH04_16920 PF05130 FlgN protein NMH04_16940 PF10719 Late competence development protein ComFB NMH04_16945 PF00271 Helicase conserved C-terminal domain NMH04_16945 PF04851 Type III restriction enzyme, res subunit NMH04_16950 PF02645 Uncharacterised protein, DegV family COG1307 NMH04_16955 PF00196 Bacterial regulatory proteins, luxR family NMH04_16955 PF00072 Response regulator receiver domain NMH04_16960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMH04_16960 PF05384 Sensor protein DegS NMH04_16960 PF07730 Histidine kinase NMH04_16965 PF09186 Domain of unknown function (DUF1949) NMH04_16965 PF01205 Uncharacterized protein family UPF0029 NMH04_16970 PF03816 Cell envelope-related transcriptional attenuator domain NMH04_16975 PF00953 Glycosyl transferase family 4 NMH04_16985 PF00535 Glycosyl transferase family 2 NMH04_16990 PF02706 Chain length determinant protein NMH04_16995 PF04932 O-Antigen ligase NMH04_17000 PF16363 GDP-mannose 4,6 dehydratase NMH04_17005 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NMH04_17005 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NMH04_17005 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NMH04_17010 PF13439 Glycosyltransferase Family 4 NMH04_17010 PF00534 Glycosyl transferases group 1 NMH04_17015 PF14667 Polysaccharide biosynthesis C-terminal domain NMH04_17015 PF01943 Polysaccharide biosynthesis protein NMH04_17020 PF02397 Bacterial sugar transferase NMH04_17030 PF01520 N-acetylmuramoyl-L-alanine amidase NMH04_17030 PF04122 Putative cell wall binding repeat 2 NMH04_17035 PF01520 N-acetylmuramoyl-L-alanine amidase NMH04_17035 PF04122 Putative cell wall binding repeat 2 NMH04_17040 PF08486 Stage II sporulation protein NMH04_17040 PF04122 Putative cell wall binding repeat 2 NMH04_17050 PF03816 Cell envelope-related transcriptional attenuator domain NMH04_17055 PF02350 UDP-N-acetylglucosamine 2-epimerase NMH04_17060 PF00483 Nucleotidyl transferase NMH04_17065 PF00005 ABC transporter NMH04_17070 PF01061 ABC-2 type transporter NMH04_17075 PF00535 Glycosyl transferase family 2 NMH04_17085 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NMH04_17085 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NMH04_17085 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NMH04_17110 PF01467 Cytidylyltransferase-like NMH04_17115 PF03808 Glycosyl transferase WecB/TagA/CpsF family NMH04_17120 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase NMH04_17125 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase NMH04_17125 PF08239 Bacterial SH3 domain NMH04_17125 PF05036 Sporulation related domain NMH04_17135 PF01238 Phosphomannose isomerase type I NMH04_17140 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_17145 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_17150 PF01547 Bacterial extracellular solute-binding protein NMH04_17155 PF00196 Bacterial regulatory proteins, luxR family NMH04_17155 PF00072 Response regulator receiver domain NMH04_17160 PF02743 Cache domain NMH04_17160 PF00672 HAMP domain NMH04_17160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMH04_17160 PF06580 Histidine kinase NMH04_17170 PF00583 Acetyltransferase (GNAT) family NMH04_17175 PF01081 KDPG and KHG aldolase NMH04_17180 PF00294 pfkB family carbohydrate kinase NMH04_17185 PF00356 Bacterial regulatory proteins, lacI family NMH04_17190 PF04962 KduI/IolB family NMH04_17200 PF03323 Bacillus/Clostridium GerA spore germination protein NMH04_17205 PF03845 Spore germination protein NMH04_17210 PF05504 Spore germination B3/ GerAC like, C-terminal NMH04_17215 PF00534 Glycosyl transferases group 1 NMH04_17215 PF00535 Glycosyl transferase family 2 NMH04_17220 PF00083 Sugar (and other) transporter NMH04_17225 PF03816 Cell envelope-related transcriptional attenuator domain NMH04_17235 PF00877 NlpC/P60 family NMH04_17245 PF09587 Bacterial capsule synthesis protein PGA_cap NMH04_17250 PF14102 Capsule biosynthesis CapC NMH04_17255 PF08245 Mur ligase middle domain NMH04_17260 PF03323 Bacillus/Clostridium GerA spore germination protein NMH04_17270 PF05504 Spore germination B3/ GerAC like, C-terminal NMH04_17275 PF00356 Bacterial regulatory proteins, lacI family NMH04_17280 PF00294 pfkB family carbohydrate kinase NMH04_17285 PF05025 RbsD / FucU transport protein family NMH04_17290 PF00005 ABC transporter NMH04_17295 PF02653 Branched-chain amino acid transport system / permease component NMH04_17300 PF13407 Periplasmic binding protein domain NMH04_17305 PF01613 Flavin reductase like domain NMH04_17310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMH04_17310 PF03466 LysR substrate binding domain NMH04_17315 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NMH04_17315 PF00205 Thiamine pyrophosphate enzyme, central domain NMH04_17315 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NMH04_17320 PF03306 Alpha-acetolactate decarboxylase NMH04_17325 PF01037 Lrp/AsnC ligand binding domain NMH04_17325 PF13404 AsnC-type helix-turn-helix domain NMH04_17330 PF02417 Chromate transporter NMH04_17335 PF02417 Chromate transporter NMH04_17340 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NMH04_17340 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NMH04_17340 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NMH04_17350 PF04434 SWIM zinc finger NMH04_17355 PF12419 SNF2 Helicase protein NMH04_17355 PF00176 SNF2 family N-terminal domain NMH04_17355 PF00271 Helicase conserved C-terminal domain NMH04_17360 PF13426 PAS domain NMH04_17360 PF01740 STAS domain NMH04_17375 PF14183 YwpF-like protein NMH04_17380 PF01741 Large-conductance mechanosensitive channel, MscL NMH04_17385 PF07977 FabA-like domain NMH04_17390 PF18801 response regulator aspartate phosphatase H, N terminal NMH04_17395 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NMH04_17395 PF00460 Flagella basal body rod protein NMH04_17400 PF00460 Flagella basal body rod protein NMH04_17400 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NMH04_17410 PF12116 Stage III sporulation protein D NMH04_17415 PF01047 MarR family NMH04_17420 PF07690 Major Facilitator Superfamily NMH04_17425 PF01569 PAP2 superfamily NMH04_17430 PF07690 Major Facilitator Superfamily NMH04_17435 PF00497 Bacterial extracellular solute-binding proteins, family 3 NMH04_17440 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_17445 PF00005 ABC transporter NMH04_17450 PF00909 Ammonium Transporter Family NMH04_17455 PF00543 Nitrogen regulatory protein P-II NMH04_17460 PF01551 Peptidase family M23 NMH04_17465 PF00583 Acetyltransferase (GNAT) family NMH04_17475 PF00471 Ribosomal protein L33 NMH04_17480 PF07683 Cobalamin synthesis protein cobW C-terminal domain NMH04_17480 PF02492 CobW/HypB/UreG, nucleotide-binding domain NMH04_17485 PF00253 Ribosomal protein S14p/S29e NMH04_17490 PF04055 Radical SAM superfamily NMH04_17490 PF06463 Molybdenum Cofactor Synthesis C NMH04_17495 PF02634 FdhD/NarQ family NMH04_17500 PF07690 Major Facilitator Superfamily NMH04_17505 PF00384 Molybdopterin oxidoreductase NMH04_17505 PF18364 Molybdopterin oxidoreductase N-terminal domain NMH04_17505 PF01568 Molydopterin dinucleotide binding domain NMH04_17510 PF00092 von Willebrand factor type A domain NMH04_17515 PF00092 von Willebrand factor type A domain NMH04_17520 PF08486 Stage II sporulation protein NMH04_17525 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NMH04_17530 PF08680 TATA-box binding NMH04_17535 PF06612 Protein of unknown function (DUF1146) NMH04_17545 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain NMH04_17545 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NMH04_17550 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NMH04_17550 PF02874 ATP synthase alpha/beta family, beta-barrel domain NMH04_17555 PF00231 ATP synthase NMH04_17560 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NMH04_17560 PF02874 ATP synthase alpha/beta family, beta-barrel domain NMH04_17560 PF00306 ATP synthase alpha/beta chain, C terminal domain NMH04_17565 PF00213 ATP synthase delta (OSCP) subunit NMH04_17570 PF00430 ATP synthase B/B' CF(0) NMH04_17575 PF00137 ATP synthase subunit C NMH04_17580 PF00119 ATP synthase A chain NMH04_17585 PF03899 ATP synthase I chain NMH04_17595 PF00464 Serine hydroxymethyltransferase NMH04_17600 PF04260 Protein of unknown function (DUF436) NMH04_17605 PF02502 Ribose/Galactose Isomerase NMH04_17610 PF01451 Low molecular weight phosphotyrosine protein phosphatase NMH04_17615 PF02659 Putative manganese efflux pump NMH04_17620 PF03481 Putative GTP-binding controlling metal-binding NMH04_17620 PF01300 Telomere recombination NMH04_17630 PF09551 Stage II sporulation protein R (spore_II_R) NMH04_17640 PF05175 Methyltransferase small domain NMH04_17640 PF17827 PrmC N-terminal domain NMH04_17645 PF00472 RF-1 domain NMH04_17645 PF03462 PCRF domain NMH04_17650 PF13411 MerR HTH family regulatory protein NMH04_17655 PF03547 Membrane transport protein NMH04_17660 PF00390 Malic enzyme, N-terminal domain NMH04_17660 PF03949 Malic enzyme, NAD binding domain NMH04_17665 PF00265 Thymidine kinase NMH04_17670 PF01197 Ribosomal protein L31 NMH04_17675 PF07497 Rho termination factor, RNA-binding domain NMH04_17675 PF07498 Rho termination factor, N-terminal domain NMH04_17675 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NMH04_17680 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded NMH04_17685 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NMH04_17690 PF00923 Transaldolase/Fructose-6-phosphate aldolase NMH04_17695 PF01116 Fructose-bisphosphate aldolase class-II NMH04_17700 PF00072 Response regulator receiver domain NMH04_17705 PF10740 Domain of unknown function (DUF2529) NMH04_17710 PF06418 CTP synthase N-terminus NMH04_17710 PF00117 Glutamine amidotransferase class-I NMH04_17715 PF05066 HB1, ASXL, restriction endonuclease HTH domain NMH04_17730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NMH04_17730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NMH04_17730 PF02770 Acyl-CoA dehydrogenase, middle domain NMH04_17735 PF02770 Acyl-CoA dehydrogenase, middle domain NMH04_17735 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NMH04_17735 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NMH04_17740 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NMH04_17740 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NMH04_17745 PF02803 Thiolase, C-terminal domain NMH04_17745 PF00108 Thiolase, N-terminal domain NMH04_17750 PF02754 Cysteine-rich domain NMH04_17750 PF13183 4Fe-4S dicluster domain NMH04_17755 PF13091 PLD-like domain NMH04_17770 PF02016 LD-carboxypeptidase N-terminal domain NMH04_17770 PF17676 LD-carboxypeptidase C-terminal domain NMH04_17775 PF00664 ABC transporter transmembrane region NMH04_17775 PF00005 ABC transporter NMH04_17780 PF13091 PLD-like domain NMH04_17780 PF13396 Phospholipase_D-nuclease N-terminal NMH04_17785 PF02016 LD-carboxypeptidase N-terminal domain NMH04_17785 PF17676 LD-carboxypeptidase C-terminal domain NMH04_17790 PF03485 Arginyl tRNA synthetase N terminal domain NMH04_17790 PF05746 DALR anticodon binding domain NMH04_17790 PF00750 tRNA synthetases class I (R) NMH04_17795 PF09148 Domain of unknown function (DUF1934) NMH04_17805 PF00491 Arginase family NMH04_17810 PF17284 Spermidine synthase tetramerisation domain NMH04_17815 PF00905 Penicillin binding protein transpeptidase domain NMH04_17815 PF00912 Transglycosylase NMH04_17820 PF08741 YwhD family NMH04_17825 PF02163 Peptidase family M50 NMH04_17830 PF01361 Tautomerase enzyme NMH04_17845 PF01966 HD domain NMH04_17850 PF07293 Protein of unknown function (DUF1450) NMH04_17870 PF03099 Biotin/lipoate A/B protein ligase family NMH04_17895 PF14449 Pre-toxin TG NMH04_17895 PF04740 LXG domain of WXG superfamily NMH04_17925 PF03737 Aldolase/RraA NMH04_17935 PF01515 Phosphate acetyl/butaryl transferase NMH04_17940 PF06778 Chlorite dismutase NMH04_17945 PF07690 Major Facilitator Superfamily NMH04_17950 PF01037 Lrp/AsnC ligand binding domain NMH04_17955 PF07690 Major Facilitator Superfamily NMH04_17965 PF07883 Cupin domain NMH04_17980 PF00155 Aminotransferase class I and II NMH04_17990 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase NMH04_17995 PF04321 RmlD substrate binding domain NMH04_18000 PF16363 GDP-mannose 4,6 dehydratase NMH04_18005 PF00483 Nucleotidyl transferase NMH04_18010 PF04101 Glycosyltransferase family 28 C-terminal domain NMH04_18015 PF02348 Cytidylyltransferase NMH04_18020 PF08666 SAF domain NMH04_18020 PF03102 NeuB family NMH04_18025 PF00583 Acetyltransferase (GNAT) family NMH04_18030 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NMH04_18035 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase NMH04_18040 PF00535 Glycosyl transferase family 2 NMH04_18050 PF09671 Spore coat protein (Spore_GerQ) NMH04_18060 PF04241 Protein of unknown function (DUF423) NMH04_18065 PF00860 Permease family NMH04_18070 PF17261 Family of unknown function (DUF5327) NMH04_18075 PF00171 Aldehyde dehydrogenase family NMH04_18080 PF03167 Uracil DNA glycosylase superfamily NMH04_18085 PF00535 Glycosyl transferase family 2 NMH04_18095 PF08543 Phosphomethylpyrimidine kinase NMH04_18125 PF00251 Glycosyl hydrolases family 32 N-terminal domain NMH04_18125 PF08244 Glycosyl hydrolases family 32 C terminal NMH04_18130 PF00367 phosphotransferase system, EIIB NMH04_18130 PF02378 Phosphotransferase system, EIIC NMH04_18135 PF00874 PRD domain NMH04_18135 PF03123 CAT RNA binding domain NMH04_18145 PF05922 Peptidase inhibitor I9 NMH04_18145 PF02225 PA domain NMH04_18145 PF00082 Subtilase family NMH04_18145 PF13860 FlgD Ig-like domain NMH04_18155 PF00296 Luciferase-like monooxygenase NMH04_18160 PF00881 Nitroreductase family NMH04_18165 PF01098 Cell cycle protein NMH04_18170 PF17368 Spore morphogenesis and germination YwcE NMH04_18175 PF03626 Prokaryotic Cytochrome C oxidase subunit IV NMH04_18180 PF00510 Cytochrome c oxidase subunit III NMH04_18185 PF00115 Cytochrome C and Quinol oxidase polypeptide I NMH04_18190 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NMH04_18190 PF02790 Cytochrome C oxidase subunit II, transmembrane domain NMH04_18200 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain NMH04_18200 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain NMH04_18205 PF16363 GDP-mannose 4,6 dehydratase NMH04_18210 PF10509 Galactokinase galactose-binding signature NMH04_18210 PF08544 GHMP kinases C terminal NMH04_18210 PF00288 GHMP kinases N terminal domain NMH04_18225 PF04138 GtrA-like protein NMH04_18245 PF04341 Protein of unknown function, DUF485 NMH04_18250 PF00474 Sodium:solute symporter family NMH04_18275 PF02581 Thiamine monophosphate synthase NMH04_18280 PF02110 Hydroxyethylthiazole kinase family NMH04_18285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMH04_18285 PF03466 LysR substrate binding domain NMH04_18290 PF03788 LrgA family NMH04_18295 PF04172 LrgB-like family NMH04_18300 PF10672 S-adenosylmethionine-dependent methyltransferase NMH04_18300 PF17785 PUA-like domain NMH04_18305 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NMH04_18325 PF00005 ABC transporter NMH04_18330 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_18335 PF00497 Bacterial extracellular solute-binding proteins, family 3 NMH04_18340 PF18801 response regulator aspartate phosphatase H, N terminal NMH04_18350 PF04607 Region found in RelA / SpoT proteins NMH04_18355 PF02653 Branched-chain amino acid transport system / permease component NMH04_18360 PF00005 ABC transporter NMH04_18365 PF13407 Periplasmic binding protein domain NMH04_18370 PF13229 Right handed beta helix region NMH04_18375 PF01063 Amino-transferase class IV NMH04_18385 PF02056 Family 4 glycosyl hydrolase NMH04_18385 PF11975 Family 4 glycosyl hydrolase C-terminal domain NMH04_18390 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit NMH04_18395 PF02378 Phosphotransferase system, EIIC NMH04_18400 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NMH04_18405 PF08279 HTH domain NMH04_18405 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NMH04_18405 PF00874 PRD domain NMH04_18405 PF05043 Mga helix-turn-helix domain NMH04_18425 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NMH04_18425 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NMH04_18440 PF04542 Sigma-70 region 2 NMH04_18440 PF08281 Sigma-70, region 4 NMH04_18445 PF00544 Pectate lyase NMH04_18450 PF00664 ABC transporter transmembrane region NMH04_18450 PF00005 ABC transporter NMH04_18455 PF00005 ABC transporter NMH04_18455 PF00664 ABC transporter transmembrane region NMH04_18460 PF02322 Cytochrome bd terminal oxidase subunit II NMH04_18465 PF01654 Cytochrome bd terminal oxidase subunit I NMH04_18470 PF03992 Antibiotic biosynthesis monooxygenase NMH04_18480 PF01032 FecCD transport family NMH04_18485 PF01497 Periplasmic binding protein NMH04_18490 PF04203 Sortase domain NMH04_18495 PF00005 ABC transporter NMH04_18500 PF01032 FecCD transport family NMH04_18505 PF01497 Periplasmic binding protein NMH04_18515 PF05031 Iron Transport-associated domain NMH04_18520 PF05031 Iron Transport-associated domain NMH04_18525 PF01638 HxlR-like helix-turn-helix NMH04_18530 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NMH04_18535 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NMH04_18535 PF00925 GTP cyclohydrolase II NMH04_18540 PF01872 RibD C-terminal domain NMH04_18540 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NMH04_18550 PF01522 Polysaccharide deacetylase NMH04_18555 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit NMH04_18560 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NMH04_18565 PF00232 Glycosyl hydrolase family 1 NMH04_18570 PF03786 D-mannonate dehydratase (UxuA) NMH04_18575 PF02378 Phosphotransferase system, EIIC NMH04_18580 PF00874 PRD domain NMH04_18580 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NMH04_18580 PF08279 HTH domain NMH04_18580 PF05043 Mga helix-turn-helix domain NMH04_18605 PF03553 Na+/H+ antiporter family NMH04_18610 PF10415 Fumarase C C-terminus NMH04_18610 PF00206 Lyase NMH04_18615 PF17763 Glutaminase/Asparaginase C-terminal domain NMH04_18615 PF00710 Asparaginase, N-terminal NMH04_18620 PF01381 Helix-turn-helix NMH04_18630 PF17353 Family of unknown function (DUF5381) NMH04_18645 PF06013 Proteins of 100 residues with WXG NMH04_18650 PF01546 Peptidase family M20/M25/M40 NMH04_18650 PF07687 Peptidase dimerisation domain NMH04_18665 PF01418 Helix-turn-helix domain, rpiR family NMH04_18665 PF01380 SIS domain NMH04_18670 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NMH04_18670 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NMH04_18680 PF02447 GntP family permease NMH04_18685 PF01717 Cobalamin-independent synthase, Catalytic domain NMH04_18690 PF08007 Cupin superfamily protein NMH04_18705 PF00232 Glycosyl hydrolase family 1 NMH04_18710 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NMH04_18710 PF00367 phosphotransferase system, EIIB NMH04_18710 PF02378 Phosphotransferase system, EIIC NMH04_18715 PF00874 PRD domain NMH04_18715 PF03123 CAT RNA binding domain NMH04_18720 PF09234 Domain of unknown function (DUF1963) NMH04_18730 PF02361 Cobalt transport protein NMH04_18735 PF00005 ABC transporter NMH04_18740 PF09819 ABC-type cobalt transport system, permease component NMH04_18745 PF03070 TENA/THI-4/PQQC family NMH04_18775 PF05547 Immune inhibitor A peptidase M6 NMH04_18775 PF00801 PKD domain NMH04_18780 PF03992 Antibiotic biosynthesis monooxygenase NMH04_18785 PF00881 Nitroreductase family NMH04_18790 PF01047 MarR family NMH04_18795 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain NMH04_18795 PF02885 Glycosyl transferase family, helical bundle domain NMH04_18795 PF00591 Glycosyl transferase family, a/b domain NMH04_18800 PF07662 Na+ dependent nucleoside transporter C-terminus NMH04_18800 PF01773 Na+ dependent nucleoside transporter N-terminus NMH04_18805 PF01791 DeoC/LacD family aldolase NMH04_18810 PF04198 Putative sugar-binding domain NMH04_18820 PF01757 Acyltransferase family NMH04_18825 PF07690 Major Facilitator Superfamily NMH04_18830 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain NMH04_18830 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NMH04_18830 PF01488 Shikimate / quinate 5-dehydrogenase NMH04_18835 PF13649 Methyltransferase domain NMH04_18840 PF00072 Response regulator receiver domain NMH04_18840 PF00196 Bacterial regulatory proteins, luxR family NMH04_18850 PF13411 MerR HTH family regulatory protein NMH04_18855 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NMH04_18860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMH04_18865 PF00324 Amino acid permease NMH04_18870 PF08713 DNA alkylation repair enzyme NMH04_18875 PF02447 GntP family permease NMH04_18880 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NMH04_18880 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NMH04_18885 PF01380 SIS domain NMH04_18885 PF01418 Helix-turn-helix domain, rpiR family NMH04_18890 PF01156 Inosine-uridine preferring nucleoside hydrolase NMH04_18930 PF03466 LysR substrate binding domain NMH04_18930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMH04_18935 PF00356 Bacterial regulatory proteins, lacI family NMH04_18940 PF13416 Bacterial extracellular solute-binding protein NMH04_18945 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_18950 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_18955 PF07745 Glycosyl hydrolase family 53 NMH04_18960 PF02449 Beta-galactosidase NMH04_18960 PF08533 Beta-galactosidase C-terminal domain NMH04_18960 PF08532 Beta-galactosidase trimerisation domain NMH04_18980 PF00005 ABC transporter NMH04_18995 PF03600 Citrate transporter NMH04_19005 PF12679 ABC-2 family transporter protein NMH04_19010 PF00005 ABC transporter NMH04_19015 PF08274 PhnA Zinc-Ribbon NMH04_19015 PF03831 PhnA domain NMH04_19020 PF02595 Glycerate kinase family NMH04_19025 PF02447 GntP family permease NMH04_19030 PF05651 Putative sugar diacid recognition NMH04_19030 PF17853 GGDEF-like domain NMH04_19030 PF13556 PucR C-terminal helix-turn-helix domain NMH04_19035 PF17922 Tetracyclin repressor-like, C-terminal domain NMH04_19035 PF00440 Bacterial regulatory proteins, tetR family NMH04_19040 PF07690 Major Facilitator Superfamily NMH04_19050 PF00005 ABC transporter NMH04_19055 PF18801 response regulator aspartate phosphatase H, N terminal NMH04_19060 PF00874 PRD domain NMH04_19060 PF03123 CAT RNA binding domain NMH04_19065 PF00232 Glycosyl hydrolase family 1 NMH04_19070 PF00367 phosphotransferase system, EIIB NMH04_19070 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NMH04_19070 PF02378 Phosphotransferase system, EIIC NMH04_19095 PF00293 NUDIX domain NMH04_19110 PF00324 Amino acid permease NMH04_19115 PF00356 Bacterial regulatory proteins, lacI family NMH04_19120 PF07690 Major Facilitator Superfamily NMH04_19125 PF08501 Shikimate dehydrogenase substrate binding domain NMH04_19125 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NMH04_19130 PF07690 Major Facilitator Superfamily NMH04_19150 PF04740 LXG domain of WXG superfamily NMH04_19150 PF14410 HNH/ENDO VII superfamily nuclease with conserved GHE residues NMH04_19150 PF14449 Pre-toxin TG NMH04_19165 PF00232 Glycosyl hydrolase family 1 NMH04_19170 PF00367 phosphotransferase system, EIIB NMH04_19170 PF02378 Phosphotransferase system, EIIC NMH04_19170 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NMH04_19175 PF00392 Bacterial regulatory proteins, gntR family NMH04_19175 PF07702 UTRA domain NMH04_19185 PF02567 Phenazine biosynthesis-like protein NMH04_19190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMH04_19190 PF03466 LysR substrate binding domain NMH04_19210 PF00027 Cyclic nucleotide-binding domain NMH04_19210 PF13545 Crp-like helix-turn-helix domain NMH04_19225 PF16123 Hydroxyacylglutathione hydrolase C-terminus NMH04_19225 PF00753 Metallo-beta-lactamase superfamily NMH04_19240 PF02590 Predicted SPOUT methyltransferase NMH04_19245 PF14116 YyzF-like protein NMH04_19250 PF02361 Cobalt transport protein NMH04_19255 PF12558 ATP-binding cassette cobalt transporter NMH04_19255 PF00005 ABC transporter NMH04_19260 PF07155 ECF-type riboflavin transporter, S component NMH04_19275 PF00005 ABC transporter NMH04_19280 PF00583 Acetyltransferase (GNAT) family NMH04_19285 PF13180 PDZ domain NMH04_19290 PF00753 Metallo-beta-lactamase superfamily NMH04_19295 PF09648 YycH protein NMH04_19300 PF07435 YycH protein NMH04_19305 PF00672 HAMP domain NMH04_19305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMH04_19305 PF00512 His Kinase A (phospho-acceptor) domain NMH04_19305 PF13426 PAS domain NMH04_19310 PF00072 Response regulator receiver domain NMH04_19310 PF00486 Transcriptional regulatory protein, C terminal NMH04_19335 PF00578 AhpC/TSA family NMH04_19345 PF04235 Protein of unknown function (DUF418) NMH04_19350 PF00709 Adenylosuccinate synthetase NMH04_19355 PF00440 Bacterial regulatory proteins, tetR family NMH04_19360 PF00067 Cytochrome P450 NMH04_19365 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NMH04_19370 PF03796 DnaB-like helicase C terminal domain NMH04_19370 PF00772 DnaB-like helicase N terminal domain NMH04_19375 PF16226 Domain of unknown function (DUF4885) NMH04_19385 PF00756 Putative esterase NMH04_19390 PF00106 short chain dehydrogenase NMH04_19395 PF00425 chorismate binding enzyme NMH04_19400 PF13193 AMP-binding enzyme C-terminal domain NMH04_19400 PF00501 AMP-binding enzyme NMH04_19405 PF00550 Phosphopantetheine attachment site NMH04_19405 PF00857 Isochorismatase family NMH04_19410 PF00550 Phosphopantetheine attachment site NMH04_19410 PF00668 Condensation domain NMH04_19410 PF00501 AMP-binding enzyme NMH04_19410 PF00975 Thioesterase domain NMH04_19410 PF13193 AMP-binding enzyme C-terminal domain NMH04_19415 PF03621 MbtH-like protein NMH04_19420 PF01497 Periplasmic binding protein NMH04_19420 PF12833 Helix-turn-helix domain NMH04_19425 PF01497 Periplasmic binding protein NMH04_19430 PF00756 Putative esterase NMH04_19435 PF14174 YycC-like protein NMH04_19440 PF07690 Major Facilitator Superfamily NMH04_19445 PF03948 Ribosomal protein L9, C-terminal domain NMH04_19445 PF01281 Ribosomal protein L9, N-terminal domain NMH04_19450 PF01368 DHH family NMH04_19450 PF02272 DHHA1 domain NMH04_19455 PF09991 Predicted membrane protein (DUF2232) NMH04_19460 PF01368 DHH family NMH04_19460 PF02833 DHHA2 domain NMH04_19465 PF13739 Deacetylase PdaC NMH04_19465 PF11738 Protein of unknown function (DUF3298) NMH04_19470 PF08281 Sigma-70, region 4 NMH04_19470 PF04542 Sigma-70 region 2 NMH04_19480 PF06628 Catalase-related immune-responsive NMH04_19480 PF00199 Catalase NMH04_19485 PF03358 NADPH-dependent FMN reductase NMH04_19490 PF01738 Dienelactone hydrolase family NMH04_19495 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NMH04_19500 PF00528 Binding-protein-dependent transport system inner membrane component NMH04_19505 PF00005 ABC transporter NMH04_19505 PF00571 CBS domain NMH04_19510 PF01084 Ribosomal protein S18 NMH04_19515 PF00436 Single-strand binding protein family NMH04_19520 PF01250 Ribosomal protein S6 NMH04_19525 PF01926 50S ribosome-binding GTPase NMH04_19525 PF06071 Protein of unknown function (DUF933) NMH04_19530 PF06107 Bacterial protein of unknown function (DUF951) NMH04_19550 PF06866 Protein of unknown function (DUF1256) NMH04_19555 PF17762 HTH domain found in ParB protein NMH04_19555 PF02195 ParB-like nuclease domain NMH04_19560 PF13614 AAA domain NMH04_19570 PF02195 ParB-like nuclease domain NMH04_19570 PF17762 HTH domain found in ParB protein NMH04_19575 PF02527 rRNA small subunit methyltransferase G NMH04_19580 PF01134 Glucose inhibited division protein A NMH04_19580 PF13932 GidA associated domain NMH04_19585 PF01926 50S ribosome-binding GTPase NMH04_19585 PF12631 MnmE helical domain NMH04_19585 PF10396 GTP-binding protein TrmE N-terminus NMH04_19590 PF14804 Jag N-terminus NMH04_19590 PF01424 R3H domain NMH04_19595 PF02096 60Kd inner membrane protein NMH04_19600 PF00825 Ribonuclease P NMH04_19605 PF00468 Ribosomal protein L34