locus-tag class description JNE42_00005 PF00308 Bacterial dnaA protein JNE42_00005 PF08299 Bacterial dnaA protein helix-turn-helix JNE42_00005 PF11638 DnaA N-terminal domain JNE42_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain JNE42_00010 PF02767 DNA polymerase III beta subunit, central domain JNE42_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain JNE42_00020 PF02463 RecF/RecN/SMC N terminal domain JNE42_00025 PF04025 Domain of unknown function (DUF370) JNE42_00030 PF01751 Toprim domain JNE42_00030 PF00204 DNA gyrase B JNE42_00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JNE42_00030 PF00986 DNA gyrase B subunit, carboxyl terminus JNE42_00035 PF00521 DNA gyrase/topoisomerase IV, subunit A JNE42_00035 PF03989 DNA gyrase C-terminal domain, beta-propeller JNE42_00065 PF14175 YaaC-like Protein JNE42_00070 PF00478 IMP dehydrogenase / GMP reductase domain JNE42_00070 PF00571 CBS domain JNE42_00075 PF07943 Penicillin-binding protein 5, C-terminal domain JNE42_00075 PF00768 D-alanyl-D-alanine carboxypeptidase JNE42_00080 PF00392 Bacterial regulatory proteins, gntR family JNE42_00080 PF00155 Aminotransferase class I and II JNE42_00085 PF01680 SOR/SNZ family JNE42_00090 PF01174 SNO glutamine amidotransferase family JNE42_00095 PF02403 Seryl-tRNA synthetase N-terminal domain JNE42_00095 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JNE42_00100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JNE42_00110 PF01712 Deoxynucleoside kinase JNE42_00115 PF01712 Deoxynucleoside kinase JNE42_00120 PF01476 LysM domain JNE42_00120 PF00704 Glycosyl hydrolases family 18 JNE42_00125 PF00857 Isochorismatase family JNE42_00130 PF14437 MafB19-like deaminase JNE42_00140 PF12169 DNA polymerase III subunits gamma and tau domain III JNE42_00145 PF02575 YbaB/EbfC DNA-binding family JNE42_00150 PF13662 Toprim domain JNE42_00150 PF02132 RecR protein JNE42_00155 PF10704 Protein of unknown function (DUF2508) JNE42_00160 PF07441 SigmaK-factor processing regulatory protein BofA JNE42_00190 PF10764 Inhibitor of sigma-G Gin JNE42_00195 PF10112 5-bromo-4-chloroindolyl phosphate hydrolysis protein JNE42_00200 PF05816 Toxic anion resistance protein (TelA) JNE42_00205 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain JNE42_00205 PF01276 Orn/Lys/Arg decarboxylase, major domain JNE42_00210 PF02223 Thymidylate kinase JNE42_00215 PF06153 Cyclic-di-AMP receptor JNE42_00220 PF03885 Protein of unknown function (DUF327) JNE42_00225 PF09115 DNA polymerase III, delta subunit, C terminal JNE42_00230 PF04468 PSP1 C-terminal conserved region JNE42_00235 PF06156 Initiation control protein YabA JNE42_00240 PF05175 Methyltransferase small domain JNE42_00245 PF01541 GIY-YIG catalytic domain JNE42_00250 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JNE42_00255 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin JNE42_00255 PF18277 AbrB C-terminal domain JNE42_00260 PF08264 Anticodon-binding domain of tRNA JNE42_00260 PF09334 tRNA synthetases class I (M) JNE42_00260 PF01588 Putative tRNA binding domain JNE42_00265 PF01026 TatD related DNase JNE42_00270 PF07501 G5 domain JNE42_00270 PF03990 G5-linked-Ubiquitin-like domain JNE42_00270 PF06725 3D domain JNE42_00275 PF13662 Toprim domain JNE42_00275 PF13331 Domain of unknown function (DUF4093) JNE42_00280 PF00398 Ribosomal RNA adenine dimethylase JNE42_00290 PF05582 YabG peptidase U57 JNE42_00295 PF06257 Biofilm formation stimulator VEG JNE42_00300 PF00269 Small, acid-soluble spore proteins, alpha/beta type JNE42_00305 PF08544 GHMP kinases C terminal JNE42_00305 PF00288 GHMP kinases N terminal domain JNE42_00310 PF09182 Bacterial purine repressor, N-terminal JNE42_00310 PF00156 Phosphoribosyl transferase domain JNE42_00315 PF01042 Endoribonuclease L-PSP JNE42_00320 PF04026 SpoVG JNE42_00325 PF00483 Nucleotidyl transferase JNE42_00325 PF00132 Bacterial transferase hexapeptide (six repeats) JNE42_00330 PF14572 Phosphoribosyl synthetase-associated domain JNE42_00330 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JNE42_00335 PF14693 Ribosomal protein TL5, C-terminal domain JNE42_00335 PF01386 Ribosomal L25p family JNE42_00340 PF01195 Peptidyl-tRNA hydrolase JNE42_00345 PF10955 Protein of unknown function (DUF2757) JNE42_00350 PF03461 TRCF domain JNE42_00350 PF02559 CarD-like/TRCF domain JNE42_00350 PF00270 DEAD/DEAH box helicase JNE42_00350 PF00271 Helicase conserved C-terminal domain JNE42_00350 PF17757 UvrB interaction domain JNE42_00355 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin JNE42_00355 PF15714 Stage V sporulation protein T C-terminal, transcription factor JNE42_00360 PF01943 Polysaccharide biosynthesis protein JNE42_00360 PF14667 Polysaccharide biosynthesis C-terminal domain JNE42_00365 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JNE42_00365 PF03819 MazG nucleotide pyrophosphohydrolase domain JNE42_00370 PF01479 S4 domain JNE42_00375 PF07873 YabP family JNE42_00380 PF09578 Spore cortex protein YabQ (Spore_YabQ) JNE42_00385 PF04977 Septum formation initiator JNE42_00390 PF00575 S1 RNA binding domain JNE42_00405 PF07228 Stage II sporulation protein E (SpoIIE) JNE42_00410 PF00092 von Willebrand factor type A domain JNE42_00415 PF00069 Protein kinase domain JNE42_00420 PF01171 PP-loop family JNE42_00420 PF09179 TilS substrate binding domain JNE42_00420 PF11734 TilS substrate C-terminal domain JNE42_00425 PF00156 Phosphoribosyl transferase domain JNE42_00430 PF01434 Peptidase family M41 JNE42_00430 PF06480 FtsH Extracellular JNE42_00430 PF17862 AAA+ lid domain JNE42_00430 PF00004 ATPase family associated with various cellular activities (AAA) JNE42_00435 PF03309 Type III pantothenate kinase JNE42_00440 PF01430 Hsp33 protein JNE42_00445 PF13145 PPIC-type PPIASE domain JNE42_00450 PF00291 Pyridoxal-phosphate dependent enzyme JNE42_00455 PF00425 chorismate binding enzyme JNE42_00455 PF04715 Anthranilate synthase component I, N terminal region JNE42_00460 PF00117 Glutamine amidotransferase class-I JNE42_00465 PF01063 Amino-transferase class IV JNE42_00470 PF00809 Pterin binding enzyme JNE42_00475 PF02152 Dihydroneopterin aldolase JNE42_00480 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JNE42_00485 PF01381 Helix-turn-helix JNE42_00490 PF01207 Dihydrouridine synthase (Dus) JNE42_00495 PF00152 tRNA synthetases class II (D, K and N) JNE42_00495 PF01336 OB-fold nucleic acid binding domain JNE42_00575 PF17727 CtsR C-terminal dimerization domain JNE42_00575 PF05848 CtsR N-terminal HTH domain JNE42_00580 PF02151 UvrB/uvrC motif JNE42_00585 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain JNE42_00590 PF07724 AAA domain (Cdc48 subfamily) JNE42_00590 PF00004 ATPase family associated with various cellular activities (AAA) JNE42_00590 PF02861 Clp amino terminal domain, pathogenicity island component JNE42_00590 PF17871 AAA lid domain JNE42_00590 PF10431 C-terminal, D2-small domain, of ClpB protein JNE42_00595 PF18073 Rubredoxin metal binding domain JNE42_00600 PF10635 DisA bacterial checkpoint controller linker region JNE42_00600 PF02457 DisA bacterial checkpoint controller nucleotide-binding JNE42_00610 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase JNE42_00615 PF02542 YgbB family JNE42_00620 PF00749 tRNA synthetases class I (E and Q), catalytic domain JNE42_00625 PF06426 Serine acetyltransferase, N-terminal JNE42_00625 PF00132 Bacterial transferase hexapeptide (six repeats) JNE42_00630 PF01406 tRNA synthetases class I (C) catalytic domain JNE42_00630 PF09190 DALR domain JNE42_00635 PF00636 Ribonuclease III domain JNE42_00640 PF00588 SpoU rRNA Methylase family JNE42_00640 PF08032 RNA 2'-O ribose methyltransferase substrate binding JNE42_00645 PF05991 YacP-like NYN domain JNE42_00650 PF04542 Sigma-70 region 2 JNE42_00650 PF08281 Sigma-70, region 4 JNE42_00655 PF00471 Ribosomal protein L33 JNE42_00660 PF00584 SecE/Sec61-gamma subunits of protein translocation complex JNE42_00665 PF02357 Transcription termination factor nusG JNE42_00665 PF00467 KOW motif JNE42_00670 PF00298 Ribosomal protein L11, RNA binding domain JNE42_00670 PF03946 Ribosomal protein L11, N-terminal domain JNE42_00675 PF00687 Ribosomal protein L1p/L10e family JNE42_00680 PF00466 Ribosomal protein L10 JNE42_00685 PF00542 Ribosomal protein L7/L12 C-terminal domain JNE42_00685 PF16320 Ribosomal protein L7/L12 dimerisation domain JNE42_00690 PF05175 Methyltransferase small domain JNE42_00695 PF00562 RNA polymerase Rpb2, domain 6 JNE42_00695 PF10385 RNA polymerase beta subunit external 1 domain JNE42_00695 PF04565 RNA polymerase Rpb2, domain 3 JNE42_00695 PF04563 RNA polymerase beta subunit JNE42_00695 PF04560 RNA polymerase Rpb2, domain 7 JNE42_00695 PF04561 RNA polymerase Rpb2, domain 2 JNE42_00700 PF00623 RNA polymerase Rpb1, domain 2 JNE42_00700 PF04983 RNA polymerase Rpb1, domain 3 JNE42_00700 PF04997 RNA polymerase Rpb1, domain 1 JNE42_00700 PF05000 RNA polymerase Rpb1, domain 4 JNE42_00700 PF04998 RNA polymerase Rpb1, domain 5 JNE42_00705 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family JNE42_00710 PF00164 Ribosomal protein S12/S23 JNE42_00715 PF00177 Ribosomal protein S7p/S5e JNE42_00720 PF14492 Elongation Factor G, domain II JNE42_00720 PF00679 Elongation factor G C-terminus JNE42_00720 PF00009 Elongation factor Tu GTP binding domain JNE42_00720 PF03764 Elongation factor G, domain IV JNE42_00720 PF03144 Elongation factor Tu domain 2 JNE42_00725 PF00009 Elongation factor Tu GTP binding domain JNE42_00725 PF03144 Elongation factor Tu domain 2 JNE42_00725 PF03143 Elongation factor Tu C-terminal domain JNE42_00730 PF12146 Serine aminopeptidase, S33 JNE42_00735 PF00338 Ribosomal protein S10p/S20e JNE42_00740 PF00297 Ribosomal protein L3 JNE42_00745 PF00573 Ribosomal protein L4/L1 family JNE42_00750 PF00276 Ribosomal protein L23 JNE42_00755 PF03947 Ribosomal Proteins L2, C-terminal domain JNE42_00755 PF00181 Ribosomal Proteins L2, RNA binding domain JNE42_00760 PF00203 Ribosomal protein S19 JNE42_00765 PF00237 Ribosomal protein L22p/L17e JNE42_00770 PF00189 Ribosomal protein S3, C-terminal domain JNE42_00770 PF07650 KH domain JNE42_00775 PF00252 Ribosomal protein L16p/L10e JNE42_00780 PF00831 Ribosomal L29 protein JNE42_00785 PF00366 Ribosomal protein S17 JNE42_00790 PF00238 Ribosomal protein L14p/L23e JNE42_00795 PF00467 KOW motif JNE42_00795 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JNE42_00800 PF00673 ribosomal L5P family C-terminus JNE42_00800 PF00281 Ribosomal protein L5 JNE42_00805 PF00253 Ribosomal protein S14p/S29e JNE42_00810 PF00410 Ribosomal protein S8 JNE42_00815 PF00347 Ribosomal protein L6 JNE42_00820 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JNE42_00825 PF00333 Ribosomal protein S5, N-terminal domain JNE42_00825 PF03719 Ribosomal protein S5, C-terminal domain JNE42_00830 PF00327 Ribosomal protein L30p/L7e JNE42_00835 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JNE42_00840 PF00344 SecY translocase JNE42_00845 PF05191 Adenylate kinase, active site lid JNE42_00850 PF00557 Metallopeptidase family M24 JNE42_00855 PF01176 Translation initiation factor 1A / IF-1 JNE42_00860 PF00444 Ribosomal protein L36 JNE42_00865 PF00416 Ribosomal protein S13/S18 JNE42_00870 PF00411 Ribosomal protein S11 JNE42_00875 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain JNE42_00875 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain JNE42_00875 PF01000 RNA polymerase Rpb3/RpoA insert domain JNE42_00880 PF01196 Ribosomal protein L17 JNE42_00885 PF00005 ABC transporter JNE42_00890 PF00005 ABC transporter JNE42_00895 PF02361 Cobalt transport protein JNE42_00900 PF01416 tRNA pseudouridine synthase JNE42_00905 PF00572 Ribosomal protein L13 JNE42_00910 PF00380 Ribosomal protein S9/S16 JNE42_00935 PF13302 Acetyltransferase (GNAT) domain JNE42_00955 PF10730 Protein of unknown function (DUF2521) JNE42_00960 PF01520 N-acetylmuramoyl-L-alanine amidase JNE42_00965 PF10609 NUBPL iron-transfer P-loop NTPase JNE42_00970 PF17898 Spore germination GerD central core domain JNE42_00975 PF14089 KinB-signalling pathway activation in sporulation JNE42_00980 PF01522 Polysaccharide deacetylase JNE42_01010 PF14659 Phage integrase, N-terminal SAM-like domain JNE42_01010 PF00589 Phage integrase family JNE42_01015 PF06114 IrrE N-terminal-like domain JNE42_01025 PF01381 Helix-turn-helix JNE42_01055 PF09466 Hypothetical protein Yqai JNE42_01085 PF03796 DnaB-like helicase C terminal domain JNE42_01085 PF00772 DnaB-like helicase N terminal domain JNE42_01115 PF17356 Phage-like element PBSX protein XtrA JNE42_01205 PF04466 Phage terminase large subunit JNE42_01205 PF17288 Terminase RNAseH like domain JNE42_01210 PF04860 Phage portal protein JNE42_01215 PF04233 Phage Mu protein F like protein JNE42_01220 PF14550 Putative phage serine protease XkdF JNE42_01225 PF05065 Phage capsid family JNE42_01230 PF14553 YqbF, hypothetical protein domain JNE42_01235 PF11436 Protein of unknown function (DUF3199) JNE42_01240 PF12206 Domain of unknown function (DUF3599) JNE42_01245 PF04883 Bacteriophage HK97-gp10, putative tail-component JNE42_01260 PF04984 Phage tail sheath protein subtilisin-like domain JNE42_01260 PF17482 Phage tail sheath C-terminal domain JNE42_01260 PF17481 Phage tail sheath protein beta-sandwich domain JNE42_01265 PF09393 Phage tail tube protein JNE42_01275 PF08890 Phage XkdN-like tail assembly chaperone protein, TAC JNE42_01280 PF01464 Transglycosylase SLT domain JNE42_01280 PF01464 Transglycosylase SLT domain JNE42_01285 PF01476 LysM domain JNE42_01295 PF10844 Protein of unknown function (DUF2577) JNE42_01300 PF10934 Protein of unknown function (DUF2634) JNE42_01305 PF04865 Baseplate J-like protein JNE42_01310 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) JNE42_01335 PF10960 BhlA holin family JNE42_01340 PF04688 SPP1 phage holin JNE42_01345 PF01471 Putative peptidoglycan binding domain JNE42_01345 PF01510 N-acetylmuramoyl-L-alanine amidase JNE42_01355 PF08863 YolD-like protein JNE42_01360 PF13176 Tetratricopeptide repeat JNE42_01360 PF18801 response regulator aspartate phosphatase H, N terminal JNE42_01370 PF00916 Sulfate permease family JNE42_01370 PF01740 STAS domain JNE42_01375 PF01758 Sodium Bile acid symporter family JNE42_01380 PF07075 Protein of unknown function (DUF1343) JNE42_01385 PF00933 Glycosyl hydrolase family 3 N terminal domain JNE42_01385 PF01915 Glycosyl hydrolase family 3 C-terminal domain JNE42_01390 PF00144 Beta-lactamase JNE42_01395 PF02378 Phosphotransferase system, EIIC JNE42_01395 PF00367 phosphotransferase system, EIIB JNE42_01400 PF01380 SIS domain JNE42_01400 PF01418 Helix-turn-helix domain, rpiR family JNE42_01405 PF13580 SIS domain JNE42_01435 PF00491 Arginase family JNE42_01440 PF04542 Sigma-70 region 2 JNE42_01440 PF08281 Sigma-70, region 4 JNE42_01445 PF13490 Putative zinc-finger JNE42_01450 PF02457 DisA bacterial checkpoint controller nucleotide-binding JNE42_01455 PF07949 YbbR-like protein JNE42_01460 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JNE42_01460 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JNE42_01460 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JNE42_01460 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JNE42_01465 PF01380 SIS domain JNE42_01470 PF02463 RecF/RecN/SMC N terminal domain JNE42_01475 PF13361 UvrD-like helicase C-terminal domain JNE42_01475 PF00580 UvrD/REP helicase N-terminal domain JNE42_01495 PF13732 Domain of unknown function (DUF4162) JNE42_01495 PF00005 ABC transporter JNE42_01505 PF00005 ABC transporter JNE42_01510 PF00005 ABC transporter JNE42_01510 PF02687 FtsX-like permease family JNE42_01510 PF12704 MacB-like periplasmic core domain JNE42_01515 PF03551 Transcriptional regulator PadR-like family JNE42_01515 PF10400 Virulence activator alpha C-term JNE42_01525 PF00005 ABC transporter JNE42_01540 PF13905 Thioredoxin-like JNE42_01550 PF00501 AMP-binding enzyme JNE42_01550 PF13193 AMP-binding enzyme C-terminal domain JNE42_01550 PF00668 Condensation domain JNE42_01550 PF00550 Phosphopantetheine attachment site JNE42_01555 PF04235 Protein of unknown function (DUF418) JNE42_01565 PF00005 ABC transporter JNE42_01575 PF01381 Helix-turn-helix JNE42_01585 PF00561 alpha/beta hydrolase fold JNE42_01590 PF12833 Helix-turn-helix domain JNE42_01595 PF17922 Tetracyclin repressor-like, C-terminal domain JNE42_01595 PF00440 Bacterial regulatory proteins, tetR family JNE42_01610 PF00324 Amino acid permease JNE42_01615 PF03009 Glycerophosphoryl diester phosphodiesterase family JNE42_01620 PF07690 Major Facilitator Superfamily JNE42_01630 PF03190 Protein of unknown function, DUF255 JNE42_01640 PF00109 Beta-ketoacyl synthase, N-terminal domain JNE42_01640 PF02801 Beta-ketoacyl synthase, C-terminal domain JNE42_01675 PF02583 Metal-sensitive transcriptional repressor JNE42_01680 PF13686 DsrE/DsrF/DrsH-like family JNE42_01690 PF00581 Rhodanese-like domain JNE42_01690 PF01206 Sulfurtransferase TusA JNE42_01695 PF00581 Rhodanese-like domain JNE42_01695 PF00753 Metallo-beta-lactamase superfamily JNE42_01700 PF01206 Sulfurtransferase TusA JNE42_01705 PF01925 Sulfite exporter TauE/SafE JNE42_01715 PF09180 Prolyl-tRNA synthetase, C-terminal JNE42_01715 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JNE42_01715 PF03129 Anticodon binding domain JNE42_01720 PF07690 Major Facilitator Superfamily JNE42_01735 PF01047 MarR family JNE42_01740 PF04463 Protein of unknown function (DUF523) JNE42_01750 PF00248 Aldo/keto reductase family JNE42_01755 PF00465 Iron-containing alcohol dehydrogenase JNE42_01760 PF00581 Rhodanese-like domain JNE42_01760 PF17773 UPF0176 acylphosphatase like domain JNE42_01760 PF12368 Rhodanase C-terminal JNE42_01765 PF13520 Amino acid permease JNE42_01775 PF03123 CAT RNA binding domain JNE42_01775 PF00874 PRD domain JNE42_01780 PF00367 phosphotransferase system, EIIB JNE42_01780 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JNE42_01780 PF02378 Phosphotransferase system, EIIC JNE42_01785 PF00232 Glycosyl hydrolase family 1 JNE42_01810 PF08279 HTH domain JNE42_01810 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JNE42_01810 PF05043 Mga helix-turn-helix domain JNE42_01810 PF00874 PRD domain JNE42_01815 PF00480 ROK family JNE42_01820 PF09261 Alpha mannosidase middle domain JNE42_01820 PF01074 Glycosyl hydrolases family 38 N-terminal domain JNE42_01820 PF07748 Glycosyl hydrolases family 38 C-terminal domain JNE42_01830 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JNE42_01835 PF00381 PTS HPr component phosphorylation site JNE42_01835 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JNE42_01840 PF17936 Bacterial Ig domain JNE42_01840 PF00082 Subtilase family JNE42_01855 PF00324 Amino acid permease JNE42_01860 PF02574 Homocysteine S-methyltransferase JNE42_01865 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JNE42_01865 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JNE42_01870 PF03551 Transcriptional regulator PadR-like family JNE42_01885 PF07690 Major Facilitator Superfamily JNE42_01890 PF00583 Acetyltransferase (GNAT) family JNE42_01905 PF00082 Subtilase family JNE42_01910 PF01425 Amidase JNE42_01915 PF00440 Bacterial regulatory proteins, tetR family JNE42_01920 PF07883 Cupin domain JNE42_01925 PF08240 Alcohol dehydrogenase GroES-like domain JNE42_01925 PF13823 Alcohol dehydrogenase GroES-associated JNE42_01925 PF00107 Zinc-binding dehydrogenase JNE42_01930 PF01047 MarR family JNE42_01935 PF13193 AMP-binding enzyme C-terminal domain JNE42_01935 PF00501 AMP-binding enzyme JNE42_01940 PF13520 Amino acid permease JNE42_01950 PF00561 alpha/beta hydrolase fold JNE42_01955 PF01235 Sodium:alanine symporter family JNE42_01960 PF04960 Glutaminase JNE42_01965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JNE42_01970 PF08664 YcbB domain JNE42_01970 PF00072 Response regulator receiver domain JNE42_01975 PF05225 helix-turn-helix, Psq domain JNE42_01975 PF02810 SEC-C motif JNE42_01980 PF11611 Domain of unknown function (DUF4352) JNE42_01980 PF17118 Domain of unknown function (DUF5105) JNE42_01985 PF00248 Aldo/keto reductase family JNE42_01990 PF14501 GHKL domain JNE42_01995 PF04397 LytTr DNA-binding domain JNE42_01995 PF00072 Response regulator receiver domain JNE42_02000 PF00005 ABC transporter JNE42_02005 PF12679 ABC-2 family transporter protein JNE42_02015 PF11611 Domain of unknown function (DUF4352) JNE42_02015 PF17118 Domain of unknown function (DUF5105) JNE42_02020 PF07486 Cell Wall Hydrolase JNE42_02035 PF00296 Luciferase-like monooxygenase JNE42_02040 PF02342 TerD domain JNE42_02045 PF02342 TerD domain JNE42_02050 PF02342 TerD domain JNE42_02055 PF03741 Integral membrane protein TerC family JNE42_02080 PF14266 Putative component of 'biosynthetic module' JNE42_02085 PF05816 Toxic anion resistance protein (TelA) JNE42_02090 PF00005 ABC transporter JNE42_02090 PF00571 CBS domain JNE42_02095 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_02100 PF04069 Substrate binding domain of ABC-type glycine betaine transport system JNE42_02115 PF07687 Peptidase dimerisation domain JNE42_02115 PF01546 Peptidase family M20/M25/M40 JNE42_02120 PF03606 C4-dicarboxylate anaerobic carrier JNE42_02125 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JNE42_02125 PF00056 lactate/malate dehydrogenase, NAD binding domain JNE42_02130 PF02652 L-lactate permease JNE42_02135 PF00356 Bacterial regulatory proteins, lacI family JNE42_02140 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JNE42_02145 PF05116 Sucrose-6F-phosphate phosphohydrolase JNE42_02150 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JNE42_02150 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JNE42_02155 PF07690 Major Facilitator Superfamily JNE42_02160 PF01810 LysE type translocator JNE42_02170 PF10852 Protein of unknown function (DUF2651) JNE42_02175 PF08892 YqcI/YcgG family JNE42_02180 PF00324 Amino acid permease JNE42_02185 PF09347 Domain of unknown function (DUF1989) JNE42_02190 PF02540 NAD synthase JNE42_02205 PF13181 Tetratricopeptide repeat JNE42_02205 PF18801 response regulator aspartate phosphatase H, N terminal JNE42_02220 PF00171 Aldehyde dehydrogenase family JNE42_02225 PF01487 Type I 3-dehydroquinase JNE42_02230 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JNE42_02230 PF00205 Thiamine pyrophosphate enzyme, central domain JNE42_02230 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JNE42_02240 PF02515 CoA-transferase family III JNE42_02245 PF07690 Major Facilitator Superfamily JNE42_02255 PF01614 Bacterial transcriptional regulator JNE42_02255 PF09339 IclR helix-turn-helix domain JNE42_02260 PF01202 Shikimate kinase JNE42_02265 PF00701 Dihydrodipicolinate synthetase family JNE42_02270 PF00356 Bacterial regulatory proteins, lacI family JNE42_02275 PF07690 Major Facilitator Superfamily JNE42_02280 PF08241 Methyltransferase domain JNE42_02285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JNE42_02285 PF03466 LysR substrate binding domain JNE42_02290 PF00795 Carbon-nitrogen hydrolase JNE42_02295 PF05448 Acetyl xylan esterase (AXE1) JNE42_02305 PF10127 RNA repair pathway DNA polymerase beta family JNE42_02310 PF01619 Proline dehydrogenase JNE42_02315 PF00171 Aldehyde dehydrogenase family JNE42_02320 PF13556 PucR C-terminal helix-turn-helix domain JNE42_02320 PF17853 GGDEF-like domain JNE42_02325 PF02040 Arsenical pump membrane protein JNE42_02330 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_02335 PF00497 Bacterial extracellular solute-binding proteins, family 3 JNE42_02340 PF10925 Protein of unknown function (DUF2680) JNE42_02345 PF12706 Beta-lactamase superfamily domain JNE42_02350 PF01037 Lrp/AsnC ligand binding domain JNE42_02355 PF02522 Aminoglycoside 3-N-acetyltransferase JNE42_02360 PF11033 Competence protein J (ComJ) JNE42_02365 PF00672 HAMP domain JNE42_02365 PF17202 Single cache domain 3 JNE42_02365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JNE42_02370 PF14040 Deoxyribonuclease NucA/NucB JNE42_02375 PF01968 Hydantoinase/oxoprolinase JNE42_02375 PF05378 Hydantoinase/oxoprolinase N-terminal region JNE42_02390 PF08402 TOBE domain JNE42_02390 PF00005 ABC transporter JNE42_02395 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_02400 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_02405 PF00550 Phosphopantetheine attachment site JNE42_02405 PF13193 AMP-binding enzyme C-terminal domain JNE42_02405 PF00501 AMP-binding enzyme JNE42_02405 PF00668 Condensation domain JNE42_02410 PF13193 AMP-binding enzyme C-terminal domain JNE42_02410 PF00501 AMP-binding enzyme JNE42_02410 PF00668 Condensation domain JNE42_02410 PF00550 Phosphopantetheine attachment site JNE42_02415 PF00975 Thioesterase domain JNE42_02415 PF00550 Phosphopantetheine attachment site JNE42_02415 PF00668 Condensation domain JNE42_02415 PF13193 AMP-binding enzyme C-terminal domain JNE42_02415 PF00501 AMP-binding enzyme JNE42_02420 PF13193 AMP-binding enzyme C-terminal domain JNE42_02420 PF00501 AMP-binding enzyme JNE42_02420 PF00550 Phosphopantetheine attachment site JNE42_02420 PF00668 Condensation domain JNE42_02425 PF00668 Condensation domain JNE42_02425 PF13193 AMP-binding enzyme C-terminal domain JNE42_02425 PF00550 Phosphopantetheine attachment site JNE42_02425 PF00501 AMP-binding enzyme JNE42_02430 PF00975 Thioesterase domain JNE42_02435 PF00005 ABC transporter JNE42_02445 PF00892 EamA-like transporter family JNE42_02450 PF00392 Bacterial regulatory proteins, gntR family JNE42_02450 PF00155 Aminotransferase class I and II JNE42_02455 PF01648 4'-phosphopantetheinyl transferase superfamily JNE42_02460 PF06445 GyrI-like small molecule binding domain JNE42_02460 PF12833 Helix-turn-helix domain JNE42_02475 PF00005 ABC transporter JNE42_02480 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_02485 PF00497 Bacterial extracellular solute-binding proteins, family 3 JNE42_02490 PF01738 Dienelactone hydrolase family JNE42_02495 PF00324 Amino acid permease JNE42_02500 PF00854 POT family JNE42_02505 PF13229 Right handed beta helix region JNE42_02505 PF12708 Pectate lyase superfamily protein JNE42_02510 PF00296 Luciferase-like monooxygenase JNE42_02515 PF00583 Acetyltransferase (GNAT) family JNE42_02520 PF00497 Bacterial extracellular solute-binding proteins, family 3 JNE42_02525 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_02530 PF00005 ABC transporter JNE42_02535 PF07687 Peptidase dimerisation domain JNE42_02535 PF01546 Peptidase family M20/M25/M40 JNE42_02540 PF03972 MmgE/PrpD family JNE42_02550 PF00072 Response regulator receiver domain JNE42_02550 PF00486 Transcriptional regulatory protein, C terminal JNE42_02555 PF00672 HAMP domain JNE42_02555 PF00512 His Kinase A (phospho-acceptor) domain JNE42_02555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JNE42_02560 PF01740 STAS domain JNE42_02560 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain JNE42_02565 PF00696 Amino acid kinase family JNE42_02565 PF13840 ACT domain JNE42_02570 PF07690 Major Facilitator Superfamily JNE42_02575 PF00440 Bacterial regulatory proteins, tetR family JNE42_02585 PF01022 Bacterial regulatory protein, arsR family JNE42_02590 PF00392 Bacterial regulatory proteins, gntR family JNE42_02590 PF00155 Aminotransferase class I and II JNE42_02595 PF00202 Aminotransferase class-III JNE42_02600 PF13520 Amino acid permease JNE42_02605 PF00171 Aldehyde dehydrogenase family JNE42_02610 PF02525 Flavodoxin-like fold JNE42_02615 PF07987 Domain of unkown function (DUF1775) JNE42_02620 PF13115 YtkA-like JNE42_02620 PF04234 CopC domain JNE42_02620 PF05425 Copper resistance protein D JNE42_02625 PF02378 Phosphotransferase system, EIIC JNE42_02625 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JNE42_02630 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JNE42_02635 PF01232 Mannitol dehydrogenase Rossmann domain JNE42_02635 PF08125 Mannitol dehydrogenase C-terminal domain JNE42_02640 PF02743 Cache domain JNE42_02640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JNE42_02640 PF00672 HAMP domain JNE42_02675 PF12681 Glyoxalase-like domain JNE42_02680 PF05901 Excalibur calcium-binding domain JNE42_02705 PF18801 response regulator aspartate phosphatase H, N terminal JNE42_02710 PF03746 LamB/YcsF family JNE42_02715 PF01566 Natural resistance-associated macrophage protein JNE42_02720 PF07286 Protein of unknown function (DUF1445) JNE42_02725 PF02682 Carboxyltransferase domain, subdomain C and D JNE42_02730 PF02626 Carboxyltransferase domain, subdomain A and B JNE42_02735 PF01614 Bacterial transcriptional regulator JNE42_02735 PF09339 IclR helix-turn-helix domain JNE42_02740 PF02525 Flavodoxin-like fold JNE42_02745 PF13472 GDSL-like Lipase/Acylhydrolase family JNE42_02755 PF08279 HTH domain JNE42_02755 PF05043 Mga helix-turn-helix domain JNE42_02755 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JNE42_02755 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JNE42_02755 PF00874 PRD domain JNE42_02760 PF13649 Methyltransferase domain JNE42_02770 PF16242 Pyridoxamine 5'-phosphate oxidase like JNE42_02790 PF12823 Domain of unknown function (DUF3817) JNE42_02795 PF01131 DNA topoisomerase JNE42_02795 PF01751 Toprim domain JNE42_02805 PF00990 Diguanylate cyclase, GGDEF domain JNE42_02810 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) JNE42_02820 PF03170 Bacterial cellulose synthase subunit JNE42_02825 PF13520 Amino acid permease JNE42_02830 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JNE42_02830 PF00205 Thiamine pyrophosphate enzyme, central domain JNE42_02830 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JNE42_02855 PF18593 CdiI immunity protein JNE42_02880 PF13302 Acetyltransferase (GNAT) domain JNE42_02885 PF01566 Natural resistance-associated macrophage protein JNE42_02890 PF04226 Transglycosylase associated protein JNE42_02895 PF12787 EcsC protein family JNE42_02900 PF03480 Bacterial extracellular solute-binding protein, family 7 JNE42_02905 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain JNE42_02905 PF17203 Single cache domain 3 JNE42_02905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JNE42_02910 PF00072 Response regulator receiver domain JNE42_02910 PF08279 HTH domain JNE42_02915 PF00375 Sodium:dicarboxylate symporter family JNE42_02920 PF01594 AI-2E family transporter JNE42_02925 PF00375 Sodium:dicarboxylate symporter family JNE42_02930 PF00005 ABC transporter JNE42_02945 PF13040 Fur-regulated basic protein B JNE42_02950 PF00085 Thioredoxin JNE42_02955 PF07478 D-ala D-ala ligase C-terminus JNE42_02955 PF01820 D-ala D-ala ligase N-terminus JNE42_02960 PF01225 Mur ligase family, catalytic domain JNE42_02960 PF02875 Mur ligase family, glutamate ligase domain JNE42_02960 PF08245 Mur ligase middle domain JNE42_02965 PF12146 Serine aminopeptidase, S33 JNE42_02975 PF00270 DEAD/DEAH box helicase JNE42_02975 PF00271 Helicase conserved C-terminal domain JNE42_02980 PF03703 Bacterial PH domain JNE42_02985 PF03703 Bacterial PH domain JNE42_02990 PF01694 Rhomboid family JNE42_02995 PF01648 4'-phosphopantetheinyl transferase superfamily JNE42_03005 PF01168 Alanine racemase, N-terminal domain JNE42_03005 PF00842 Alanine racemase, C-terminal domain JNE42_03010 PF01402 Ribbon-helix-helix protein, copG family JNE42_03015 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system JNE42_03020 PF01740 STAS domain JNE42_03020 PF08678 Rsbr N terminal JNE42_03025 PF01740 STAS domain JNE42_03030 PF13581 Histidine kinase-like ATPase domain JNE42_03035 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain JNE42_03035 PF07228 Stage II sporulation protein E (SpoIIE) JNE42_03040 PF01740 STAS domain JNE42_03045 PF13581 Histidine kinase-like ATPase domain JNE42_03050 PF04542 Sigma-70 region 2 JNE42_03050 PF04545 Sigma-70, region 4 JNE42_03050 PF04539 Sigma-70 region 3 JNE42_03055 PF07228 Stage II sporulation protein E (SpoIIE) JNE42_03060 PF09371 Tex-like protein N-terminal domain JNE42_03060 PF00575 S1 RNA binding domain JNE42_03060 PF16921 Tex protein YqgF-like domain JNE42_03060 PF17674 HHH domain JNE42_03070 PF17283 SprT-like zinc ribbon domain JNE42_03070 PF10263 SprT-like family JNE42_03075 PF00676 Dehydrogenase E1 component JNE42_03080 PF02780 Transketolase, C-terminal domain JNE42_03080 PF02779 Transketolase, pyrimidine binding domain JNE42_03085 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JNE42_03085 PF00364 Biotin-requiring enzyme JNE42_03085 PF02817 e3 binding domain JNE42_03090 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JNE42_03090 PF07992 Pyridine nucleotide-disulphide oxidoreductase JNE42_03095 PF01590 GAF domain JNE42_03095 PF02954 Bacterial regulatory protein, Fis family JNE42_03095 PF00158 Sigma-54 interaction domain JNE42_03140 PF00313 'Cold-shock' DNA-binding domain JNE42_03145 PF02559 CarD-like/TRCF domain JNE42_03150 PF08240 Alcohol dehydrogenase GroES-like domain JNE42_03150 PF00107 Zinc-binding dehydrogenase JNE42_03155 PF13411 MerR HTH family regulatory protein JNE42_03160 PF00722 Glycosyl hydrolases family 16 JNE42_03165 PF00440 Bacterial regulatory proteins, tetR family JNE42_03170 PF07690 Major Facilitator Superfamily JNE42_03175 PF07859 alpha/beta hydrolase fold JNE42_03185 PF00106 short chain dehydrogenase JNE42_03195 PF17763 Glutaminase/Asparaginase C-terminal domain JNE42_03195 PF00710 Asparaginase, N-terminal JNE42_03215 PF16925 Tetracyclin repressor-like, C-terminal domain JNE42_03215 PF00440 Bacterial regulatory proteins, tetR family JNE42_03220 PF07690 Major Facilitator Superfamily JNE42_03225 PF01757 Acyltransferase family JNE42_03230 PF03176 MMPL family JNE42_03235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JNE42_03235 PF07730 Histidine kinase JNE42_03240 PF00196 Bacterial regulatory proteins, luxR family JNE42_03240 PF00072 Response regulator receiver domain JNE42_03255 PF12746 GNAT acetyltransferase JNE42_03270 PF00583 Acetyltransferase (GNAT) family JNE42_03275 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JNE42_03285 PF00440 Bacterial regulatory proteins, tetR family JNE42_03290 PF01872 RibD C-terminal domain JNE42_03295 PF01047 MarR family JNE42_03300 PF00881 Nitroreductase family JNE42_03315 PF07883 Cupin domain JNE42_03315 PF01381 Helix-turn-helix JNE42_03320 PF01810 LysE type translocator JNE42_03325 PF00583 Acetyltransferase (GNAT) family JNE42_03335 PF01596 O-methyltransferase JNE42_03345 PF03591 AzlC protein JNE42_03350 PF00892 EamA-like transporter family JNE42_03360 PF00375 Sodium:dicarboxylate symporter family JNE42_03400 PF02769 AIR synthase related protein, C-terminal domain JNE42_03400 PF00586 AIR synthase related protein, N-terminal domain JNE42_03405 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE JNE42_03410 PF00814 Glycoprotease family JNE42_03415 PF00583 Acetyltransferase (GNAT) family JNE42_03420 PF00814 Glycoprotease family JNE42_03425 PF16326 ABC transporter C-terminal domain JNE42_03425 PF12848 ABC transporter JNE42_03425 PF00005 ABC transporter JNE42_03430 PF01967 MoaC family JNE42_03435 PF02629 CoA binding domain JNE42_03435 PF06971 Putative DNA-binding protein N-terminus JNE42_03440 PF02416 mttA/Hcf106 family JNE42_03445 PF00902 Sec-independent protein translocase protein (TatC) JNE42_03455 PF14146 Domain of unknown function (DUF4305) JNE42_03460 PF02517 CPBP intramembrane metalloprotease JNE42_03465 PF00166 Chaperonin 10 Kd subunit JNE42_03470 PF00118 TCP-1/cpn60 chaperonin family JNE42_03500 PF03330 Lytic transglycolase JNE42_03505 PF07676 WD40-like Beta Propeller Repeat JNE42_03515 PF07731 Multicopper oxidase JNE42_03515 PF07732 Multicopper oxidase JNE42_03515 PF00394 Multicopper oxidase JNE42_03520 PF00324 Amino acid permease JNE42_03525 PF16916 Dimerisation domain of Zinc Transporter JNE42_03525 PF01545 Cation efflux family JNE42_03530 PF17863 AAA lid domain JNE42_03530 PF07726 ATPase family associated with various cellular activities (AAA) JNE42_03535 PF01882 Protein of unknown function DUF58 JNE42_03540 PF01841 Transglutaminase-like superfamily JNE42_03540 PF13559 Domain of unknown function (DUF4129) JNE42_03540 PF11992 Domain of unknown function (DUF3488) JNE42_03545 PF00958 GMP synthase C terminal domain JNE42_03545 PF00117 Glutamine amidotransferase class-I JNE42_03545 PF02540 NAD synthase JNE42_03550 PF04073 Aminoacyl-tRNA editing domain JNE42_03555 PF12833 Helix-turn-helix domain JNE42_03560 PF00682 HMGL-like JNE42_03560 PF08502 LeuA allosteric (dimerisation) domain JNE42_03580 PF00082 Subtilase family JNE42_03585 PF13302 Acetyltransferase (GNAT) domain JNE42_03600 PF04542 Sigma-70 region 2 JNE42_03600 PF08281 Sigma-70, region 4 JNE42_03610 PF07690 Major Facilitator Superfamily JNE42_03615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JNE42_03615 PF03466 LysR substrate binding domain JNE42_03620 PF00860 Permease family JNE42_03630 PF10055 Uncharacterized small protein (DUF2292) JNE42_03640 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JNE42_03645 PF14044 NETI protein JNE42_03650 PF00731 AIR carboxylase JNE42_03655 PF02222 ATP-grasp domain JNE42_03655 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain JNE42_03660 PF10397 Adenylosuccinate lyase C-terminus JNE42_03660 PF00206 Lyase JNE42_03665 PF01259 SAICAR synthetase JNE42_03670 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase JNE42_03680 PF00586 AIR synthase related protein, N-terminal domain JNE42_03680 PF02769 AIR synthase related protein, C-terminal domain JNE42_03680 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain JNE42_03685 PF00156 Phosphoribosyl transferase domain JNE42_03690 PF02769 AIR synthase related protein, C-terminal domain JNE42_03690 PF00586 AIR synthase related protein, N-terminal domain JNE42_03695 PF00551 Formyl transferase JNE42_03700 PF01808 AICARFT/IMPCHase bienzyme JNE42_03700 PF02142 MGS-like domain JNE42_03705 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain JNE42_03705 PF02843 Phosphoribosylglycinamide synthetase, C domain JNE42_03705 PF02844 Phosphoribosylglycinamide synthetase, N domain JNE42_03725 PF00202 Aminotransferase class-III JNE42_03730 PF01144 Coenzyme A transferase JNE42_03735 PF01144 Coenzyme A transferase JNE42_03740 PF01546 Peptidase family M20/M25/M40 JNE42_03740 PF07687 Peptidase dimerisation domain JNE42_03745 PF11127 Protein of unknown function (DUF2892) JNE42_03750 PF01979 Amidohydrolase family JNE42_03750 PF13382 Adenine deaminase C-terminal domain JNE42_03755 PF01371 Trp repressor protein JNE42_03760 PF01381 Helix-turn-helix JNE42_03765 PF01645 Conserved region in glutamate synthase JNE42_03780 PF01884 PcrB family JNE42_03785 PF13361 UvrD-like helicase C-terminal domain JNE42_03785 PF00580 UvrD/REP helicase N-terminal domain JNE42_03790 PF12826 Helix-hairpin-helix motif JNE42_03790 PF01653 NAD-dependent DNA ligase adenylation domain JNE42_03790 PF03120 NAD-dependent DNA ligase OB-fold domain JNE42_03790 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JNE42_03790 PF00533 BRCA1 C Terminus (BRCT) domain JNE42_03795 PF07537 CamS sex pheromone cAM373 precursor JNE42_03800 PF01636 Phosphotransferase enzyme family JNE42_03805 PF02308 MgtC family JNE42_03810 PF00474 Sodium:solute symporter family JNE42_03815 PF02686 Glu-tRNAGln amidotransferase C subunit JNE42_03820 PF01425 Amidase JNE42_03825 PF02934 GatB/GatE catalytic domain JNE42_03825 PF02637 GatB domain JNE42_03830 PF00440 Bacterial regulatory proteins, tetR family JNE42_03835 PF00873 AcrB/AcrD/AcrF family JNE42_03845 PF01156 Inosine-uridine preferring nucleoside hydrolase JNE42_03850 PF00781 Diacylglycerol kinase catalytic domain JNE42_03855 PF01938 TRAM domain JNE42_03855 PF05958 tRNA (Uracil-5-)-methyltransferase JNE42_03890 PF04740 LXG domain of WXG superfamily JNE42_03890 PF14449 Pre-toxin TG JNE42_03895 PF01207 Dihydrouridine synthase (Dus) JNE42_03910 PF02082 Transcriptional regulator JNE42_03915 PF07992 Pyridine nucleotide-disulphide oxidoreductase JNE42_03925 PF13021 Domain of unknown function (DUF3885) JNE42_03930 PF11975 Family 4 glycosyl hydrolase C-terminal domain JNE42_03930 PF02056 Family 4 glycosyl hydrolase JNE42_03935 PF01380 SIS domain JNE42_03935 PF01418 Helix-turn-helix domain, rpiR family JNE42_03940 PF07690 Major Facilitator Superfamily JNE42_03950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JNE42_03950 PF03466 LysR substrate binding domain JNE42_03960 PF13037 Domain of unknown function (DUF3898) JNE42_03960 PF13039 Protein of unknown function (DUF3900) JNE42_03970 PF00483 Nucleotidyl transferase JNE42_03975 PF16363 GDP-mannose 4,6 dehydratase JNE42_03980 PF03407 Nucleotide-diphospho-sugar transferase JNE42_03985 PF00535 Glycosyl transferase family 2 JNE42_03990 PF03407 Nucleotide-diphospho-sugar transferase JNE42_03995 PF07690 Major Facilitator Superfamily JNE42_04000 PF00905 Penicillin binding protein transpeptidase domain JNE42_04000 PF03717 Penicillin-binding Protein dimerisation domain JNE42_04000 PF05223 NTF2-like N-terminal transpeptidase domain JNE42_04005 PF00939 Sodium:sulfate symporter transmembrane region JNE42_04020 PF00011 Hsp20/alpha crystallin family JNE42_04035 PF13520 Amino acid permease JNE42_04040 PF00535 Glycosyl transferase family 2 JNE42_04040 PF13181 Tetratricopeptide repeat JNE42_04045 PF16326 ABC transporter C-terminal domain JNE42_04045 PF12848 ABC transporter JNE42_04045 PF00005 ABC transporter JNE42_04050 PF02649 Type I GTP cyclohydrolase folE2 JNE42_04055 PF13411 MerR HTH family regulatory protein JNE42_04060 PF07690 Major Facilitator Superfamily JNE42_04065 PF12848 ABC transporter JNE42_04065 PF00005 ABC transporter JNE42_04070 PF00271 Helicase conserved C-terminal domain JNE42_04070 PF00270 DEAD/DEAH box helicase JNE42_04075 PF00107 Zinc-binding dehydrogenase JNE42_04075 PF16884 N-terminal domain of oxidoreductase JNE42_04080 PF11486 Protein of unknown function (DUF3212) JNE42_04085 PF11181 Heat induced stress protein YflT JNE42_04095 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JNE42_04095 PF00925 GTP cyclohydrolase II JNE42_04100 PF03781 Sulfatase-modifying factor enzyme 1 JNE42_04110 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JNE42_04110 PF01872 RibD C-terminal domain JNE42_04120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JNE42_04120 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain JNE42_04125 PF12431 Transcriptional regulator JNE42_04125 PF08279 HTH domain JNE42_04125 PF00072 Response regulator receiver domain JNE42_04130 PF03401 Tripartite tricarboxylate transporter family receptor JNE42_04135 PF03600 Citrate transporter JNE42_04145 PF05870 Phenolic acid decarboxylase (PAD) JNE42_04150 PF03551 Transcriptional regulator PadR-like family JNE42_04150 PF10400 Virulence activator alpha C-term JNE42_04155 PF02898 Nitric oxide synthase, oxygenase domain JNE42_04165 PF00708 Acylphosphatase JNE42_04170 PF03475 3-alpha domain JNE42_04170 PF03473 MOSC domain JNE42_04175 PF11121 Protein of unknown function (DUF2639) JNE42_04185 PF00557 Metallopeptidase family M24 JNE42_04190 PF00367 phosphotransferase system, EIIB JNE42_04190 PF02378 Phosphotransferase system, EIIC JNE42_04195 PF05675 Protein of unknown function (DUF817) JNE42_04205 PF14172 Domain of unknown function (DUF4309) JNE42_04210 PF00884 Sulfatase JNE42_04215 PF00282 Pyridoxal-dependent decarboxylase conserved domain JNE42_04220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JNE42_04220 PF00672 HAMP domain JNE42_04225 PF09350 Domain of unknown function (DUF1992) JNE42_04230 PF00367 phosphotransferase system, EIIB JNE42_04230 PF02378 Phosphotransferase system, EIIC JNE42_04235 PF16657 Maltogenic Amylase, C-terminal domain JNE42_04235 PF00128 Alpha amylase, catalytic domain JNE42_04240 PF00392 Bacterial regulatory proteins, gntR family JNE42_04240 PF07702 UTRA domain JNE42_04250 PF00149 Calcineurin-like phosphoesterase JNE42_04250 PF02872 5'-nucleotidase, C-terminal domain JNE42_04255 PF01965 DJ-1/PfpI family JNE42_04260 PF06569 Protein of unknown function (DUF1128) JNE42_04265 PF01235 Sodium:alanine symporter family JNE42_04270 PF01451 Low molecular weight phosphotyrosine protein phosphatase JNE42_04280 PF03631 Virulence factor BrkB JNE42_04285 PF07690 Major Facilitator Superfamily JNE42_04295 PF01699 Sodium/calcium exchanger protein JNE42_04300 PF14167 YfkD-like protein JNE42_04305 PF01709 Transcriptional regulator JNE42_04315 PF00924 Mechanosensitive ion channel JNE42_04320 PF04055 Radical SAM superfamily JNE42_04320 PF08756 YfkB-like domain JNE42_04330 PF01522 Polysaccharide deacetylase JNE42_04335 PF10898 Protein of unknown function (DUF2716) JNE42_04340 PF01544 CorA-like Mg2+ transporter protein JNE42_04350 PF00730 HhH-GPD superfamily base excision DNA repair protein JNE42_04355 PF05958 tRNA (Uracil-5-)-methyltransferase JNE42_04355 PF01938 TRAM domain JNE42_04380 PF07739 TipAS antibiotic-recognition domain JNE42_04380 PF13411 MerR HTH family regulatory protein JNE42_04385 PF07690 Major Facilitator Superfamily JNE42_04435 PF00893 Small Multidrug Resistance protein JNE42_04440 PF00893 Small Multidrug Resistance protein JNE42_04445 PF00440 Bacterial regulatory proteins, tetR family JNE42_04445 PF17934 Tetracyclin repressor-like, C-terminal domain JNE42_04460 PF00657 GDSL-like Lipase/Acylhydrolase JNE42_04465 PF07992 Pyridine nucleotide-disulphide oxidoreductase JNE42_04470 PF12833 Helix-turn-helix domain JNE42_04470 PF02805 Metal binding domain of Ada JNE42_04475 PF01497 Periplasmic binding protein JNE42_04480 PF00005 ABC transporter JNE42_04480 PF00664 ABC transporter transmembrane region JNE42_04485 PF02694 Uncharacterised BCR, YnfA/UPF0060 family JNE42_04490 PF04545 Sigma-70, region 4 JNE42_04490 PF04542 Sigma-70 region 2 JNE42_04505 PF00107 Zinc-binding dehydrogenase JNE42_04505 PF08240 Alcohol dehydrogenase GroES-like domain JNE42_04510 PF12867 DinB superfamily JNE42_04520 PF01047 MarR family JNE42_04525 PF03706 Lysylphosphatidylglycerol synthase TM region JNE42_04525 PF09924 Uncharacterised conserved protein (DUF2156) JNE42_04540 PF18801 response regulator aspartate phosphatase H, N terminal JNE42_04545 PF00881 Nitroreductase family JNE42_04560 PF08338 Domain of unknown function (DUF1731) JNE42_04560 PF01370 NAD dependent epimerase/dehydratase family JNE42_04565 PF02631 RecX family JNE42_04570 PF08838 Protein of unknown function (DUF1811) JNE42_04580 PF08176 Small acid-soluble spore protein K family JNE42_04585 PF14043 WVELL protein JNE42_04590 PF00535 Glycosyl transferase family 2 JNE42_04595 PF09586 Bacterial membrane protein YfhO JNE42_04600 PF01494 FAD binding domain JNE42_04615 PF00190 Cupin JNE42_04620 PF12841 YvrJ protein family JNE42_04625 PF04545 Sigma-70, region 4 JNE42_04635 PF04307 LexA-binding, inner membrane-associated putative hydrolase JNE42_04640 PF14815 NUDIX domain JNE42_04640 PF00730 HhH-GPD superfamily base excision DNA repair protein JNE42_04655 PF04259 Small, acid-soluble spore protein, gamma-type JNE42_04665 PF04167 Protein of unknown function (DUF402) JNE42_04670 PF00005 ABC transporter JNE42_04670 PF00664 ABC transporter transmembrane region JNE42_04675 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JNE42_04675 PF00005 ABC transporter JNE42_04680 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JNE42_04680 PF00005 ABC transporter JNE42_04685 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JNE42_04690 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_04695 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_04695 PF12911 N-terminal TM domain of oligopeptide transport permease C JNE42_04700 PF06081 Aromatic acid exporter family member 1 JNE42_04705 PF00202 Aminotransferase class-III JNE42_04710 PF00578 AhpC/TSA family JNE42_04715 PF01475 Ferric uptake regulator family JNE42_04720 PF11023 Zinc-ribbon containing domain JNE42_04725 PF14540 Nucleotidyltransferase-like JNE42_04725 PF18576 Helix-turn-helix domain JNE42_04865 PF00884 Sulfatase JNE42_04870 PF10502 Signal peptidase, peptidase S26 JNE42_04875 PF01053 Cys/Met metabolism PLP-dependent enzyme JNE42_04880 PF13040 Fur-regulated basic protein B JNE42_04890 PF00005 ABC transporter JNE42_04925 PF08331 Domain of unknown function (DUF1730) JNE42_04930 PF12671 Putative amidase domain JNE42_04935 PF00588 SpoU rRNA Methylase family JNE42_04940 PF08298 PrkA AAA domain JNE42_04940 PF06798 PrkA serine protein kinase C-terminal domain JNE42_04945 PF04285 Protein of unknown function (DUF444) JNE42_04955 PF07690 Major Facilitator Superfamily JNE42_04960 PF03358 NADPH-dependent FMN reductase JNE42_04970 PF00313 'Cold-shock' DNA-binding domain JNE42_04975 PF00990 Diguanylate cyclase, GGDEF domain JNE42_04975 PF07694 5TMR of 5TMR-LYT JNE42_04990 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) JNE42_05000 PF07875 Coat F domain JNE42_05005 PF13188 PAS domain JNE42_05005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JNE42_05005 PF00512 His Kinase A (phospho-acceptor) domain JNE42_05005 PF00989 PAS fold JNE42_05005 PF13426 PAS domain JNE42_05010 PF00746 LPXTG cell wall anchor motif JNE42_05010 PF00149 Calcineurin-like phosphoesterase JNE42_05010 PF00565 Staphylococcal nuclease homologue JNE42_05010 PF02872 5'-nucleotidase, C-terminal domain JNE42_05015 PF04203 Sortase domain JNE42_05020 PF01479 S4 domain JNE42_05020 PF00849 RNA pseudouridylate synthase JNE42_05030 PF13419 Haloacid dehalogenase-like hydrolase JNE42_05035 PF00583 Acetyltransferase (GNAT) family JNE42_05035 PF00795 Carbon-nitrogen hydrolase JNE42_05055 PF13556 PucR C-terminal helix-turn-helix domain JNE42_05055 PF17853 GGDEF-like domain JNE42_05055 PF05651 Putative sugar diacid recognition JNE42_05060 PF00202 Aminotransferase class-III JNE42_05065 PF04309 Glycerol-3-phosphate responsive antiterminator JNE42_05070 PF00230 Major intrinsic protein JNE42_05075 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JNE42_05075 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JNE42_05080 PF16901 C-terminal domain of alpha-glycerophosphate oxidase JNE42_05080 PF01266 FAD dependent oxidoreductase JNE42_05085 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JNE42_05085 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JNE42_05085 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JNE42_05085 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JNE42_05090 PF07730 Histidine kinase JNE42_05090 PF13185 GAF domain JNE42_05095 PF00196 Bacterial regulatory proteins, luxR family JNE42_05095 PF00072 Response regulator receiver domain JNE42_05100 PF14148 YhdB-like protein JNE42_05105 PF13028 Protein of unknown function (DUF3889) JNE42_05110 PF06628 Catalase-related immune-responsive JNE42_05110 PF00199 Catalase JNE42_05115 PF02082 Transcriptional regulator JNE42_05120 PF00175 Oxidoreductase NAD-binding domain JNE42_05120 PF00042 Globin JNE42_05120 PF00970 Oxidoreductase FAD-binding domain JNE42_05125 PF04293 SpoVR like protein JNE42_05130 PF00245 Alkaline phosphatase JNE42_05135 PF01476 LysM domain JNE42_05135 PF00877 NlpC/P60 family JNE42_05140 PF13520 Amino acid permease JNE42_05145 PF17453 Sigma-M inhibitor JNE42_05150 PF13800 Sigma factor regulator N-terminal JNE42_05150 PF13791 Sigma factor regulator C-terminal JNE42_05155 PF08281 Sigma-70, region 4 JNE42_05155 PF04542 Sigma-70 region 2 JNE42_05160 PF01553 Acyltransferase JNE42_05165 PF03471 Transporter associated domain JNE42_05165 PF00571 CBS domain JNE42_05165 PF01595 Cyclin M transmembrane N-terminal domain JNE42_05170 PF13411 MerR HTH family regulatory protein JNE42_05175 PF00571 CBS domain JNE42_05175 PF01595 Cyclin M transmembrane N-terminal domain JNE42_05175 PF03471 Transporter associated domain JNE42_05185 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JNE42_05190 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JNE42_05195 PF03009 Glycerophosphoryl diester phosphodiesterase family JNE42_05200 PF17444 Uncharacterized YhdX-like JNE42_05205 PF00924 Mechanosensitive ion channel JNE42_05210 PF02146 Sir2 family JNE42_05215 PF01522 Polysaccharide deacetylase JNE42_05220 PF01063 Amino-transferase class IV JNE42_05225 PF00582 Universal stress protein family JNE42_05230 PF00005 ABC transporter JNE42_05230 PF00664 ABC transporter transmembrane region JNE42_05235 PF00005 ABC transporter JNE42_05235 PF00664 ABC transporter transmembrane region JNE42_05240 PF13460 NAD(P)H-binding JNE42_05245 PF00269 Small, acid-soluble spore proteins, alpha/beta type JNE42_05250 PF00005 ABC transporter JNE42_05250 PF17912 MalK OB fold domain JNE42_05250 PF03459 TOBE domain JNE42_05255 PF13556 PucR C-terminal helix-turn-helix domain JNE42_05260 PF17277 Family of unknown function (DUF5342) JNE42_05265 PF14398 YheC/D like ATP-grasp JNE42_05270 PF14398 YheC/D like ATP-grasp JNE42_05275 PF04286 Protein of unknown function (DUF445) JNE42_05280 PF06133 Control of competence regulator ComK, YlbF/YmcA JNE42_05290 PF04055 Radical SAM superfamily JNE42_05295 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) JNE42_05300 PF00999 Sodium/hydrogen exchanger family JNE42_05305 PF02080 TrkA-C domain JNE42_05315 PF00378 Enoyl-CoA hydratase/isomerase JNE42_05320 PF14120 YhzD-like protein JNE42_05325 PF00149 Calcineurin-like phosphoesterase JNE42_05330 PF13514 AAA domain JNE42_05335 PF01966 HD domain JNE42_05340 PF14147 Sporulation protein YhaL JNE42_05350 PF09680 Family of unknown function JNE42_05355 PF09680 Family of unknown function JNE42_05360 PF11667 Putative zincin peptidase JNE42_05365 PF08963 Protein of unknown function (DUF1878) JNE42_05370 PF01047 MarR family JNE42_05375 PF12732 YtxH-like protein JNE42_05385 PF17099 Tryptophan transporter TrpP JNE42_05390 PF00266 Aminotransferase class-V JNE42_05395 PF01230 HIT domain JNE42_05400 PF00005 ABC transporter JNE42_05405 PF05975 Bacterial ABC transporter protein EcsB JNE42_05410 PF12787 EcsC protein family JNE42_05415 PF07687 Peptidase dimerisation domain JNE42_05415 PF01546 Peptidase family M20/M25/M40 JNE42_05425 PF03992 Antibiotic biosynthesis monooxygenase JNE42_05430 PF00905 Penicillin binding protein transpeptidase domain JNE42_05430 PF00912 Transglycosylase JNE42_05435 PF01208 Uroporphyrinogen decarboxylase (URO-D) JNE42_05440 PF00762 Ferrochelatase JNE42_05445 PF01593 Flavin containing amine oxidoreductase JNE42_05450 PF17932 Tetracyclin repressor-like, C-terminal domain JNE42_05450 PF00440 Bacterial regulatory proteins, tetR family JNE42_05460 PF05343 M42 glutamyl aminopeptidase JNE42_05465 PF00375 Sodium:dicarboxylate symporter family JNE42_05470 PF14149 YhfH-like protein JNE42_05475 PF12706 Beta-lactamase superfamily domain JNE42_05480 PF10437 Bacterial lipoate protein ligase C-terminus JNE42_05480 PF03099 Biotin/lipoate A/B protein ligase family JNE42_05485 PF00501 AMP-binding enzyme JNE42_05485 PF13193 AMP-binding enzyme C-terminal domain JNE42_05495 PF01435 Peptidase family M48 JNE42_05495 PF16491 CAAX prenyl protease N-terminal, five membrane helices JNE42_05500 PF05922 Peptidase inhibitor I9 JNE42_05500 PF00082 Subtilase family JNE42_05505 PF00300 Histidine phosphatase superfamily (branch 1) JNE42_05510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JNE42_05515 PF00355 Rieske [2Fe-2S] domain JNE42_05515 PF01266 FAD dependent oxidoreductase JNE42_05525 PF08858 IDEAL domain JNE42_05530 PF06338 ComK protein JNE42_05535 PF14031 Putative serine dehydratase domain JNE42_05535 PF01168 Alanine racemase, N-terminal domain JNE42_05545 PF00155 Aminotransferase class I and II JNE42_05545 PF00392 Bacterial regulatory proteins, gntR family JNE42_05550 PF07690 Major Facilitator Superfamily JNE42_05555 PF01337 Barstar (barnase inhibitor) JNE42_05560 PF01032 FecCD transport family JNE42_05565 PF01032 FecCD transport family JNE42_05570 PF00005 ABC transporter JNE42_05575 PF01497 Periplasmic binding protein JNE42_05580 PF03816 Cell envelope-related transcriptional attenuator domain JNE42_05595 PF09335 SNARE associated Golgi protein JNE42_05600 PF10502 Signal peptidase, peptidase S26 JNE42_05605 PF05145 Transition state regulatory protein AbrB JNE42_05620 PF07681 DoxX JNE42_05625 PF02915 Rubrerythrin JNE42_05630 PF12705 PD-(D/E)XK nuclease superfamily JNE42_05635 PF00580 UvrD/REP helicase N-terminal domain JNE42_05635 PF13361 UvrD-like helicase C-terminal domain JNE42_05635 PF12705 PD-(D/E)XK nuclease superfamily JNE42_05640 PF00149 Calcineurin-like phosphoesterase JNE42_05640 PF12320 Type 5 capsule protein repressor C-terminal domain JNE42_05645 PF13476 AAA domain JNE42_05655 PF10676 Spore germination protein gerPA/gerPF JNE42_05660 PF10970 Spore germination protein GerPE JNE42_05670 PF10737 Spore germination protein GerPC JNE42_05675 PF10803 Spore germination GerPB JNE42_05680 PF10676 Spore germination protein gerPA/gerPF JNE42_05690 PF08757 CotH kinase protein JNE42_05695 PF01557 Fumarylacetoacetate (FAA) hydrolase family JNE42_05700 PF07457 Protein of unknown function (DUF1516) JNE42_05705 PF10949 Protein of unknown function (DUF2777) JNE42_05710 PF00733 Asparagine synthase JNE42_05710 PF13537 Glutamine amidotransferase domain JNE42_05715 PF01593 Flavin containing amine oxidoreductase JNE42_05720 PF01593 Flavin containing amine oxidoreductase JNE42_05730 PF01554 MatE JNE42_05735 PF02311 AraC-like ligand binding domain JNE42_05735 PF12833 Helix-turn-helix domain JNE42_05755 PF00202 Aminotransferase class-III JNE42_05760 PF00282 Pyridoxal-dependent decarboxylase conserved domain JNE42_05765 PF04183 IucA / IucC family JNE42_05765 PF06276 Ferric iron reductase FhuF-like transporter JNE42_05775 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) JNE42_05780 PF04183 IucA / IucC family JNE42_05780 PF06276 Ferric iron reductase FhuF-like transporter JNE42_05795 PF02310 B12 binding domain JNE42_05795 PF00809 Pterin binding enzyme JNE42_05795 PF02965 Vitamin B12 dependent methionine synthase, activation domain JNE42_05795 PF02607 B12 binding domain JNE42_05795 PF02574 Homocysteine S-methyltransferase JNE42_05800 PF02219 Methylenetetrahydrofolate reductase JNE42_05800 PF02574 Homocysteine S-methyltransferase JNE42_05805 PF04461 Protein of unknown function (DUF520) JNE42_05810 PF17783 CvfB-like winged helix domain JNE42_05810 PF13509 S1 domain JNE42_05815 PF02608 ABC transporter substrate-binding protein PnrA-like JNE42_05820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JNE42_05820 PF00672 HAMP domain JNE42_05820 PF02743 Cache domain JNE42_05825 PF02645 Uncharacterised protein, DegV family COG1307 JNE42_05830 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JNE42_05830 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JNE42_05835 PF12690 Intracellular proteinase inhibitor JNE42_05840 PF12758 Protein of unknown function (DUF3813) JNE42_05855 PF00326 Prolyl oligopeptidase family JNE42_05860 PF01883 Iron-sulfur cluster assembly protein JNE42_05865 PF01565 FAD binding domain JNE42_05870 PF07690 Major Facilitator Superfamily JNE42_05875 PF01118 Semialdehyde dehydrogenase, NAD binding domain JNE42_05875 PF02774 Semialdehyde dehydrogenase, dimerisation domain JNE42_05880 PF01960 ArgJ family JNE42_05885 PF00696 Amino acid kinase family JNE42_05890 PF00202 Aminotransferase class-III JNE42_05895 PF00117 Glutamine amidotransferase class-I JNE42_05895 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain JNE42_05900 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JNE42_05900 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JNE42_05905 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JNE42_05905 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JNE42_05910 PF14168 YjzC-like protein JNE42_05915 PF07690 Major Facilitator Superfamily JNE42_05920 PF11151 Protein of unknown function (DUF2929) JNE42_05935 PF02608 ABC transporter substrate-binding protein PnrA-like JNE42_05940 PF10815 ComZ JNE42_05950 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JNE42_05950 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JNE42_05955 PF00109 Beta-ketoacyl synthase, N-terminal domain JNE42_05955 PF02801 Beta-ketoacyl synthase, C-terminal domain JNE42_05960 PF10026 Predicted Zn-dependent protease (DUF2268) JNE42_05965 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JNE42_05965 PF00005 ABC transporter JNE42_05970 PF00005 ABC transporter JNE42_05970 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JNE42_05975 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JNE42_05980 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_05985 PF12911 N-terminal TM domain of oligopeptide transport permease C JNE42_05985 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_05990 PF12227 Protein of unknown function (DUF3603) JNE42_05995 PF00579 tRNA synthetases class I (W and Y) JNE42_06000 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JNE42_06005 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_06010 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_06010 PF12911 N-terminal TM domain of oligopeptide transport permease C JNE42_06015 PF00005 ABC transporter JNE42_06015 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JNE42_06020 PF00005 ABC transporter JNE42_06020 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JNE42_06030 PF13508 Acetyltransferase (GNAT) domain JNE42_06035 PF03960 ArsC family JNE42_06040 PF03741 Integral membrane protein TerC family JNE42_06045 PF05389 Negative regulator of genetic competence (MecA) JNE42_06050 PF13396 Phospholipase_D-nuclease N-terminal JNE42_06050 PF13091 PLD-like domain JNE42_06060 PF01432 Peptidase family M3 JNE42_06060 PF08439 Oligopeptidase F JNE42_06075 PF01152 Bacterial-like globin JNE42_06080 PF01464 Transglycosylase SLT domain JNE42_06085 PF01928 CYTH domain JNE42_06095 PF04607 Region found in RelA / SpoT proteins JNE42_06100 PF01513 ATP-NAD kinase JNE42_06105 PF00849 RNA pseudouridylate synthase JNE42_06110 PF00149 Calcineurin-like phosphoesterase JNE42_06115 PF02254 TrkA-N domain JNE42_06115 PF00999 Sodium/hydrogen exchanger family JNE42_06115 PF02080 TrkA-C domain JNE42_06120 PF03070 TENA/THI-4/PQQC family JNE42_06125 PF02581 Thiamine monophosphate synthase JNE42_06130 PF01266 FAD dependent oxidoreductase JNE42_06135 PF02597 ThiS family JNE42_06140 PF05690 Thiazole biosynthesis protein ThiG JNE42_06145 PF00899 ThiF family JNE42_06150 PF08543 Phosphomethylpyrimidine kinase JNE42_06160 PF14153 Spore coat protein CotO JNE42_06165 PF10612 Spore coat protein Z JNE42_06170 PF10612 Spore coat protein Z JNE42_06175 PF07552 Spore Coat Protein X and V domain JNE42_06185 PF07552 Spore Coat Protein X and V domain JNE42_06190 PF07098 Protein of unknown function (DUF1360) JNE42_06205 PF14069 Stage VI sporulation protein F JNE42_06210 PF00580 UvrD/REP helicase N-terminal domain JNE42_06210 PF13361 UvrD-like helicase C-terminal domain JNE42_06220 PF13673 Acetyltransferase (GNAT) domain JNE42_06230 PF00756 Putative esterase JNE42_06235 PF01053 Cys/Met metabolism PLP-dependent enzyme JNE42_06240 PF01053 Cys/Met metabolism PLP-dependent enzyme JNE42_06250 PF02899 Phage integrase, N-terminal SAM-like domain JNE42_06250 PF00589 Phage integrase family JNE42_06350 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit JNE42_06370 PF07690 Major Facilitator Superfamily JNE42_06375 PF00701 Dihydrodipicolinate synthetase family JNE42_06380 PF03466 LysR substrate binding domain JNE42_06380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JNE42_06390 PF00302 Chloramphenicol acetyltransferase JNE42_06395 PF13176 Tetratricopeptide repeat JNE42_06395 PF18801 response regulator aspartate phosphatase H, N terminal JNE42_06410 PF10852 Protein of unknown function (DUF2651) JNE42_06415 PF01636 Phosphotransferase enzyme family JNE42_06420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JNE42_06420 PF03466 LysR substrate binding domain JNE42_06425 PF01177 Asp/Glu/Hydantoin racemase JNE42_06440 PF03466 LysR substrate binding domain JNE42_06440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JNE42_06445 PF07690 Major Facilitator Superfamily JNE42_06475 PF01168 Alanine racemase, N-terminal domain JNE42_06475 PF00842 Alanine racemase, C-terminal domain JNE42_06480 PF00107 Zinc-binding dehydrogenase JNE42_06480 PF08240 Alcohol dehydrogenase GroES-like domain JNE42_06485 PF00440 Bacterial regulatory proteins, tetR family JNE42_06495 PF00669 Bacterial flagellin N-terminal helical region JNE42_06495 PF00700 Bacterial flagellin C-terminal helical region JNE42_06500 PF00700 Bacterial flagellin C-terminal helical region JNE42_06500 PF00669 Bacterial flagellin N-terminal helical region JNE42_06505 PF01494 FAD binding domain JNE42_06520 PF05908 Poly-gamma-glutamate hydrolase JNE42_06525 PF06114 IrrE N-terminal-like domain JNE42_06530 PF01471 Putative peptidoglycan binding domain JNE42_06530 PF01476 LysM domain JNE42_06530 PF01510 N-acetylmuramoyl-L-alanine amidase JNE42_06535 PF14185 Antitoxin SpoIISB, type II toxin-antitoxin system JNE42_06540 PF14171 Toxin SpoIISA, type II toxin-antitoxin system JNE42_06545 PF01384 Phosphate transporter family JNE42_06550 PF01865 Protein of unknown function DUF47 JNE42_06570 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_06575 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_06580 PF17850 CysA C-terminal regulatory domain JNE42_06580 PF00005 ABC transporter JNE42_06580 PF12857 TOBE-like domain JNE42_06590 PF03611 PTS system sugar-specific permease component JNE42_06605 PF00107 Zinc-binding dehydrogenase JNE42_06605 PF08240 Alcohol dehydrogenase GroES-like domain JNE42_06610 PF00676 Dehydrogenase E1 component JNE42_06615 PF00364 Biotin-requiring enzyme JNE42_06615 PF02779 Transketolase, pyrimidine binding domain JNE42_06615 PF02780 Transketolase, C-terminal domain JNE42_06620 PF02817 e3 binding domain JNE42_06620 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JNE42_06620 PF00364 Biotin-requiring enzyme JNE42_06625 PF07992 Pyridine nucleotide-disulphide oxidoreductase JNE42_06625 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JNE42_06640 PF04198 Putative sugar-binding domain JNE42_06650 PF13520 Amino acid permease JNE42_06655 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JNE42_06660 PF13180 PDZ domain JNE42_06665 PF03807 NADP oxidoreductase coenzyme F420-dependent JNE42_06665 PF14748 Pyrroline-5-carboxylate reductase dimerisation JNE42_06670 PF04951 D-aminopeptidase JNE42_06675 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_06680 PF12911 N-terminal TM domain of oligopeptide transport permease C JNE42_06680 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_06685 PF00005 ABC transporter JNE42_06685 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JNE42_06690 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JNE42_06695 PF17676 LD-carboxypeptidase C-terminal domain JNE42_06695 PF02016 LD-carboxypeptidase N-terminal domain JNE42_06700 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JNE42_06700 PF13378 Enolase C-terminal domain-like JNE42_06705 PF00877 NlpC/P60 family JNE42_06710 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JNE42_06710 PF00005 ABC transporter JNE42_06720 PF03061 Thioesterase superfamily JNE42_06725 PF03551 Transcriptional regulator PadR-like family JNE42_06740 PF13302 Acetyltransferase (GNAT) domain JNE42_06745 PF02805 Metal binding domain of Ada JNE42_06745 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JNE42_06745 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JNE42_06745 PF12833 Helix-turn-helix domain JNE42_06750 PF00893 Small Multidrug Resistance protein JNE42_06755 PF00893 Small Multidrug Resistance protein JNE42_06765 PF01842 ACT domain JNE42_06765 PF00551 Formyl transferase JNE42_06770 PF01472 PUA domain JNE42_06770 PF00696 Amino acid kinase family JNE42_06775 PF00171 Aldehyde dehydrogenase family JNE42_06780 PF18801 response regulator aspartate phosphatase H, N terminal JNE42_06790 PF02566 OsmC-like protein JNE42_06795 PF01047 MarR family JNE42_06800 PF02566 OsmC-like protein JNE42_06805 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JNE42_06810 PF08267 Cobalamin-independent synthase, N-terminal domain JNE42_06810 PF01717 Cobalamin-independent synthase, Catalytic domain JNE42_06815 PF00082 Subtilase family JNE42_06830 PF00486 Transcriptional regulatory protein, C terminal JNE42_06830 PF00072 Response regulator receiver domain JNE42_06835 PF00672 HAMP domain JNE42_06835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JNE42_06835 PF00512 His Kinase A (phospho-acceptor) domain JNE42_06840 PF03413 Peptidase propeptide and YPEB domain JNE42_06845 PF03413 Peptidase propeptide and YPEB domain JNE42_06855 PF00571 CBS domain JNE42_06855 PF03448 MgtE intracellular N domain JNE42_06855 PF01769 Divalent cation transporter JNE42_06865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JNE42_06865 PF03466 LysR substrate binding domain JNE42_06875 PF13411 MerR HTH family regulatory protein JNE42_06890 PF01047 MarR family JNE42_06895 PF00990 Diguanylate cyclase, GGDEF domain JNE42_06895 PF00563 EAL domain JNE42_06895 PF03707 Bacterial signalling protein N terminal repeat JNE42_06900 PF09335 SNARE associated Golgi protein JNE42_06905 PF03741 Integral membrane protein TerC family JNE42_06910 PF04542 Sigma-70 region 2 JNE42_06915 PF12791 Anti-sigma factor N-terminus JNE42_06920 PF00269 Small, acid-soluble spore proteins, alpha/beta type JNE42_06925 PF08876 Domain of unknown function (DUF1836) JNE42_06930 PF01435 Peptidase family M48 JNE42_06935 PF02386 Cation transport protein JNE42_06940 PF04239 Protein of unknown function (DUF421) JNE42_06955 PF01757 Acyltransferase family JNE42_06960 PF13426 PAS domain JNE42_06960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JNE42_06960 PF00512 His Kinase A (phospho-acceptor) domain JNE42_06960 PF13188 PAS domain JNE42_06960 PF00989 PAS fold JNE42_06965 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JNE42_06965 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JNE42_06970 PF01008 Initiation factor 2 subunit family JNE42_06975 PF01636 Phosphotransferase enzyme family JNE42_06980 PF00155 Aminotransferase class I and II JNE42_06985 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain JNE42_06985 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain JNE42_06995 PF00596 Class II Aldolase and Adducin N-terminal domain JNE42_07000 PF03079 ARD/ARD' family JNE42_07005 PF09388 Spo0E like sporulation regulatory protein JNE42_07010 PF00512 His Kinase A (phospho-acceptor) domain JNE42_07010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JNE42_07010 PF02743 Cache domain JNE42_07015 PF01047 MarR family JNE42_07020 PF00691 OmpA family JNE42_07020 PF13677 Membrane MotB of proton-channel complex MotA/MotB JNE42_07025 PF01618 MotA/TolQ/ExbB proton channel family JNE42_07035 PF10431 C-terminal, D2-small domain, of ClpB protein JNE42_07035 PF17871 AAA lid domain JNE42_07035 PF07724 AAA domain (Cdc48 subfamily) JNE42_07035 PF00004 ATPase family associated with various cellular activities (AAA) JNE42_07045 PF06508 Queuosine biosynthesis protein QueC JNE42_07050 PF01242 6-pyruvoyl tetrahydropterin synthase JNE42_07055 PF04055 Radical SAM superfamily JNE42_07060 PF14489 QueF-like protein JNE42_07070 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) JNE42_07080 PF07486 Cell Wall Hydrolase JNE42_07085 PF01943 Polysaccharide biosynthesis protein JNE42_07090 PF00578 AhpC/TSA family JNE42_07100 PF00557 Metallopeptidase family M24 JNE42_07100 PF01321 Creatinase/Prolidase N-terminal domain JNE42_07105 PF00356 Bacterial regulatory proteins, lacI family JNE42_07105 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JNE42_07110 PF00874 PRD domain JNE42_07110 PF03123 CAT RNA binding domain JNE42_07115 PF02378 Phosphotransferase system, EIIC JNE42_07115 PF00367 phosphotransferase system, EIIB JNE42_07115 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JNE42_07120 PF00381 PTS HPr component phosphorylation site JNE42_07125 PF05524 PEP-utilising enzyme, N-terminal JNE42_07125 PF02896 PEP-utilising enzyme, TIM barrel domain JNE42_07125 PF00391 PEP-utilising enzyme, mobile domain JNE42_07130 PF11132 Transcriptional regulator protein (SplA) JNE42_07140 PF02743 Cache domain JNE42_07140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JNE42_07140 PF00672 HAMP domain JNE42_07145 PF00106 short chain dehydrogenase JNE42_07150 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JNE42_07150 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JNE42_07155 PF00188 Cysteine-rich secretory protein family JNE42_07160 PF03717 Penicillin-binding Protein dimerisation domain JNE42_07160 PF00905 Penicillin binding protein transpeptidase domain JNE42_07165 PF08447 PAS fold JNE42_07165 PF00989 PAS fold JNE42_07165 PF00512 His Kinase A (phospho-acceptor) domain JNE42_07165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JNE42_07170 PF00155 Aminotransferase class I and II JNE42_07175 PF16916 Dimerisation domain of Zinc Transporter JNE42_07175 PF01545 Cation efflux family JNE42_07185 PF06271 RDD family JNE42_07195 PF01584 CheW-like domain JNE42_07195 PF00072 Response regulator receiver domain JNE42_07200 PF14177 YkyB-like protein JNE42_07215 PF07690 Major Facilitator Superfamily JNE42_07220 PF03734 L,D-transpeptidase catalytic domain JNE42_07220 PF01476 LysM domain JNE42_07225 PF10518 TAT (twin-arginine translocation) pathway signal sequence JNE42_07225 PF00149 Calcineurin-like phosphoesterase JNE42_07235 PF00563 EAL domain JNE42_07235 PF10388 EAL-domain associated signalling protein domain JNE42_07240 PF05067 Manganese containing catalase JNE42_07245 PF08796 Protein of unknown function (DUF1797) JNE42_07250 PF04308 Ribonuclease H-like JNE42_07255 PF14156 Antirepressor AbbA JNE42_07265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JNE42_07265 PF03466 LysR substrate binding domain JNE42_07275 PF00258 Flavodoxin JNE42_07285 PF00258 Flavodoxin JNE42_07290 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal JNE42_07290 PF00132 Bacterial transferase hexapeptide (six repeats) JNE42_07290 PF14602 Hexapeptide repeat of succinyl-transferase JNE42_07295 PF01546 Peptidase family M20/M25/M40 JNE42_07295 PF07687 Peptidase dimerisation domain JNE42_07300 PF03698 Uncharacterised protein family (UPF0180) JNE42_07305 PF00924 Mechanosensitive ion channel JNE42_07310 PF10417 C-terminal domain of 1-Cys peroxiredoxin JNE42_07310 PF00578 AhpC/TSA family JNE42_07315 PF00578 AhpC/TSA family JNE42_07330 PF12804 MobA-like NTP transferase domain JNE42_07335 PF00899 ThiF family JNE42_07340 PF03454 MoeA C-terminal region (domain IV) JNE42_07340 PF00994 Probable molybdopterin binding domain JNE42_07340 PF03453 MoeA N-terminal region (domain I and II) JNE42_07345 PF03205 Molybdopterin guanine dinucleotide synthesis protein B JNE42_07350 PF02391 MoaE protein JNE42_07355 PF02597 ThiS family JNE42_07370 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JNE42_07375 PF00005 ABC transporter JNE42_07380 PF02687 FtsX-like permease family JNE42_07380 PF12704 MacB-like periplasmic core domain JNE42_07385 PF08220 DeoR-like helix-turn-helix domain JNE42_07385 PF00455 DeoR C terminal sensor domain JNE42_07390 PF00294 pfkB family carbohydrate kinase JNE42_07395 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JNE42_07395 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JNE42_07400 PF10502 Signal peptidase, peptidase S26 JNE42_07410 PF12848 ABC transporter JNE42_07410 PF00005 ABC transporter JNE42_07415 PF02073 Thermophilic metalloprotease (M29) JNE42_07420 PF17447 Uncharacterized YkpC-like JNE42_07430 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin JNE42_07430 PF18277 AbrB C-terminal domain JNE42_07435 PF00512 His Kinase A (phospho-acceptor) domain JNE42_07435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JNE42_07435 PF00989 PAS fold JNE42_07440 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like JNE42_07445 PF02254 TrkA-N domain JNE42_07445 PF02080 TrkA-C domain JNE42_07450 PF01979 Amidohydrolase family JNE42_07450 PF13382 Adenine deaminase C-terminal domain JNE42_07455 PF17770 Ribonuclease J C-terminal domain JNE42_07455 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JNE42_07455 PF00753 Metallo-beta-lactamase superfamily JNE42_07460 PF07288 Protein of unknown function (DUF1447) JNE42_07470 PF01327 Polypeptide deformylase JNE42_07485 PF00676 Dehydrogenase E1 component JNE42_07490 PF02779 Transketolase, pyrimidine binding domain JNE42_07490 PF02780 Transketolase, C-terminal domain JNE42_07495 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JNE42_07495 PF00364 Biotin-requiring enzyme JNE42_07495 PF02817 e3 binding domain JNE42_07500 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JNE42_07500 PF07992 Pyridine nucleotide-disulphide oxidoreductase JNE42_07510 PF13790 SR1 protein JNE42_07515 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain JNE42_07515 PF01276 Orn/Lys/Arg decarboxylase, major domain JNE42_07520 PF05256 Uncharacterised protein family (UPF0223) JNE42_07525 PF06335 Protein of unknown function (DUF1054) JNE42_07535 PF00459 Inositol monophosphatase family JNE42_07550 PF08281 Sigma-70, region 4 JNE42_07550 PF04542 Sigma-70 region 2 JNE42_07555 PF13490 Putative zinc-finger JNE42_07570 PF14492 Elongation Factor G, domain II JNE42_07570 PF00009 Elongation factor Tu GTP binding domain JNE42_07570 PF03144 Elongation factor Tu domain 2 JNE42_07570 PF00679 Elongation factor G C-terminus JNE42_07575 PF14036 YlaH-like protein JNE42_07580 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) JNE42_07585 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) JNE42_07590 PF02562 PhoH-like protein JNE42_07590 PF13638 PIN domain JNE42_07600 PF04960 Glutaminase JNE42_07605 PF07408 Protein of unknown function (DUF1507) JNE42_07610 PF01098 Cell cycle protein JNE42_07615 PF02785 Biotin carboxylase C-terminal domain JNE42_07615 PF00364 Biotin-requiring enzyme JNE42_07615 PF00289 Biotin carboxylase, N-terminal domain JNE42_07615 PF02436 Conserved carboxylase domain JNE42_07615 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JNE42_07615 PF00682 HMGL-like JNE42_07620 PF00875 DNA photolyase JNE42_07620 PF03441 FAD binding domain of DNA photolyase JNE42_07625 PF02628 Cytochrome oxidase assembly protein JNE42_07630 PF01040 UbiA prenyltransferase family JNE42_07635 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JNE42_07635 PF02790 Cytochrome C oxidase subunit II, transmembrane domain JNE42_07635 PF00034 Cytochrome c JNE42_07640 PF00115 Cytochrome C and Quinol oxidase polypeptide I JNE42_07645 PF00510 Cytochrome c oxidase subunit III JNE42_07650 PF03626 Prokaryotic Cytochrome C oxidase subunit IV JNE42_07655 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) JNE42_07660 PF08868 YugN-like family JNE42_07665 PF00571 CBS domain JNE42_07670 PF14504 CAP-associated N-terminal JNE42_07670 PF00188 Cysteine-rich secretory protein family JNE42_07675 PF14071 Putative coat protein JNE42_07680 PF14003 YlbE-like protein JNE42_07690 PF06133 Control of competence regulator ComK, YlbF/YmcA JNE42_07695 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) JNE42_07705 PF01467 Cytidylyltransferase-like JNE42_07710 PF07670 Nucleoside recognition JNE42_07715 PF01734 Patatin-like phospholipase JNE42_07720 PF05362 Lon protease (S16) C-terminal proteolytic domain JNE42_07720 PF13180 PDZ domain JNE42_07725 PF05636 HIGH Nucleotidyl Transferase JNE42_07730 PF02620 Large ribosomal RNA subunit accumulation protein YceD JNE42_07735 PF01783 Ribosomal L32p protein family JNE42_07745 PF00583 Acetyltransferase (GNAT) family JNE42_07750 PF02558 Ketopantoate reductase PanE/ApbA JNE42_07750 PF08546 Ketopantoate reductase PanE/ApbA C terminal JNE42_07755 PF10079 Bacillithiol biosynthesis BshC JNE42_07760 PF02381 MraZ protein, putative antitoxin-like JNE42_07765 PF01795 MraW methylase family JNE42_07775 PF00905 Penicillin binding protein transpeptidase domain JNE42_07775 PF03717 Penicillin-binding Protein dimerisation domain JNE42_07775 PF03793 PASTA domain JNE42_07780 PF03793 PASTA domain JNE42_07780 PF00905 Penicillin binding protein transpeptidase domain JNE42_07780 PF03717 Penicillin-binding Protein dimerisation domain JNE42_07785 PF01225 Mur ligase family, catalytic domain JNE42_07785 PF02875 Mur ligase family, glutamate ligase domain JNE42_07785 PF08245 Mur ligase middle domain JNE42_07790 PF00953 Glycosyl transferase family 4 JNE42_07790 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 JNE42_07795 PF02875 Mur ligase family, glutamate ligase domain JNE42_07795 PF08245 Mur ligase middle domain JNE42_07800 PF01098 Cell cycle protein JNE42_07805 PF04101 Glycosyltransferase family 28 C-terminal domain JNE42_07805 PF03033 Glycosyltransferase family 28 N-terminal domain JNE42_07810 PF01565 FAD binding domain JNE42_07810 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JNE42_07815 PF08478 POTRA domain, FtsQ-type JNE42_07820 PF05949 Bacterial protein of unknown function (DUF881) JNE42_07825 PF05949 Bacterial protein of unknown function (DUF881) JNE42_07830 PF06947 Protein of unknown function (DUF1290) JNE42_07835 PF02491 SHS2 domain inserted in FTSA JNE42_07840 PF00091 Tubulin/FtsZ family, GTPase domain JNE42_07840 PF12327 FtsZ family, C-terminal domain JNE42_07845 PF05922 Peptidase inhibitor I9 JNE42_07845 PF00082 Subtilase family JNE42_07850 PF03419 Sporulation factor SpoIIGA JNE42_07855 PF04545 Sigma-70, region 4 JNE42_07855 PF04542 Sigma-70 region 2 JNE42_07860 PF04545 Sigma-70, region 4 JNE42_07860 PF04539 Sigma-70 region 3 JNE42_07860 PF04542 Sigma-70 region 2 JNE42_07865 PF04198 Putative sugar-binding domain JNE42_07880 PF03608 PTS system enzyme II sorbitol-specific factor JNE42_07885 PF07663 Sorbitol phosphotransferase enzyme II C-terminus JNE42_07885 PF03612 Sorbitol phosphotransferase enzyme II N-terminus JNE42_07890 PF03829 PTS system glucitol/sorbitol-specific IIA component JNE42_07895 PF00005 ABC transporter JNE42_07900 PF05239 PRC-barrel domain JNE42_07905 PF02578 Multi-copper polyphenol oxidoreductase laccase JNE42_07910 PF01168 Alanine racemase, N-terminal domain JNE42_07915 PF04472 Cell division protein SepF JNE42_07920 PF02325 YGGT family JNE42_07925 PF17774 Putative RNA-binding domain in YlmH JNE42_07925 PF01479 S4 domain JNE42_07930 PF05103 DivIVA protein JNE42_07935 PF00133 tRNA synthetases class I (I, L, M and V) JNE42_07935 PF08264 Anticodon-binding domain of tRNA JNE42_07940 PF01258 Prokaryotic dksA/traR C4-type zinc finger JNE42_07945 PF01252 Signal peptidase (SPase) II JNE42_07950 PF00849 RNA pseudouridylate synthase JNE42_07950 PF01479 S4 domain JNE42_07955 PF00156 Phosphoribosyl transferase domain JNE42_07960 PF00860 Permease family JNE42_07965 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JNE42_07965 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JNE42_07970 PF01979 Amidohydrolase family JNE42_07975 PF00117 Glutamine amidotransferase class-I JNE42_07975 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain JNE42_07980 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JNE42_07980 PF02142 MGS-like domain JNE42_07980 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JNE42_07985 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B JNE42_07990 PF01180 Dihydroorotate dehydrogenase JNE42_07995 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JNE42_08000 PF00156 Phosphoribosyl transferase domain JNE42_08010 PF01507 Phosphoadenosine phosphosulfate reductase family JNE42_08015 PF01384 Phosphate transporter family JNE42_08020 PF01747 ATP-sulfurylase JNE42_08020 PF14306 PUA-like domain JNE42_08030 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JNE42_08035 PF01903 CbiX JNE42_08045 PF05670 NFACT protein RNA binding domain JNE42_08050 PF00690 Cation transporter/ATPase, N-terminus JNE42_08050 PF00689 Cation transporting ATPase, C-terminus JNE42_08055 PF03755 YicC-like family, N-terminal region JNE42_08055 PF08340 Domain of unknown function (DUF1732) JNE42_08060 PF04025 Domain of unknown function (DUF370) JNE42_08065 PF00625 Guanylate kinase JNE42_08070 PF01192 RNA polymerase Rpb6 JNE42_08075 PF04127 DNA / pantothenate metabolism flavoprotein JNE42_08075 PF02441 Flavoprotein JNE42_08080 PF00271 Helicase conserved C-terminal domain JNE42_08080 PF17764 3′ DNA-binding domain (3′BD) JNE42_08080 PF18319 PriA DNA helicase Cys-rich region (CRR) domain JNE42_08080 PF04851 Type III restriction enzyme, res subunit JNE42_08080 PF18074 Primosomal protein N C-terminal domain JNE42_08085 PF01327 Polypeptide deformylase JNE42_08090 PF00551 Formyl transferase JNE42_08090 PF02911 Formyl transferase, C-terminal domain JNE42_08095 PF01029 NusB family JNE42_08095 PF01189 16S rRNA methyltransferase RsmB/F JNE42_08100 PF04055 Radical SAM superfamily JNE42_08110 PF00069 Protein kinase domain JNE42_08110 PF03793 PASTA domain JNE42_08115 PF16745 RsgA N-terminal domain JNE42_08115 PF03193 RsgA GTPase JNE42_08120 PF00834 Ribulose-phosphate 3 epimerase family JNE42_08125 PF04263 Thiamin pyrophosphokinase, catalytic domain JNE42_08125 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain JNE42_08130 PF08183 Stage V sporulation protein family JNE42_08135 PF00830 Ribosomal L28 family JNE42_08140 PF03780 Asp23 family, cell envelope-related function JNE42_08145 PF02734 DAK2 domain JNE42_08145 PF13684 Dihydroxyacetone kinase family JNE42_08150 PF03315 Serine dehydratase beta chain JNE42_08150 PF01842 ACT domain JNE42_08155 PF03313 Serine dehydratase alpha chain JNE42_08160 PF00271 Helicase conserved C-terminal domain JNE42_08160 PF00270 DEAD/DEAH box helicase JNE42_08160 PF17191 RecG wedge domain JNE42_08170 PF02504 Fatty acid synthesis protein JNE42_08175 PF00698 Acyl transferase domain JNE42_08185 PF00550 Phosphopantetheine attachment site JNE42_08190 PF14622 Ribonuclease-III-like JNE42_08190 PF00035 Double-stranded RNA binding motif JNE42_08195 PF06470 SMC proteins Flexible Hinge Domain JNE42_08195 PF02463 RecF/RecN/SMC N terminal domain JNE42_08200 PF02881 SRP54-type protein, helical bundle domain JNE42_08200 PF00448 SRP54-type protein, GTPase domain JNE42_08205 PF04297 Putative helix-turn-helix protein, YlxM / p13 like JNE42_08210 PF00448 SRP54-type protein, GTPase domain JNE42_08210 PF02881 SRP54-type protein, helical bundle domain JNE42_08210 PF02978 Signal peptide binding domain JNE42_08215 PF00886 Ribosomal protein S16 JNE42_08225 PF11068 YlqD protein JNE42_08230 PF01782 RimM N-terminal domain JNE42_08230 PF05239 PRC-barrel domain JNE42_08235 PF01746 tRNA (Guanine-1)-methyltransferase JNE42_08240 PF01245 Ribosomal protein L19 JNE42_08245 PF01926 50S ribosome-binding GTPase JNE42_08250 PF01351 Ribonuclease HII JNE42_08260 PF01312 FlhB HrpN YscU SpaS Family JNE42_08265 PF08442 ATP-grasp domain JNE42_08265 PF00549 CoA-ligase JNE42_08270 PF00549 CoA-ligase JNE42_08270 PF02629 CoA binding domain JNE42_08275 PF02481 DNA recombination-mediator protein A JNE42_08280 PF01131 DNA topoisomerase JNE42_08280 PF01396 Topoisomerase DNA binding C4 zinc finger JNE42_08280 PF01751 Toprim domain JNE42_08285 PF01134 Glucose inhibited division protein A JNE42_08290 PF00589 Phage integrase family JNE42_08290 PF02899 Phage integrase, N-terminal SAM-like domain JNE42_08295 PF00227 Proteasome subunit JNE42_08300 PF00004 ATPase family associated with various cellular activities (AAA) JNE42_08300 PF10431 C-terminal, D2-small domain, of ClpB protein JNE42_08300 PF07724 AAA domain (Cdc48 subfamily) JNE42_08305 PF08222 CodY helix-turn-helix domain JNE42_08305 PF06018 CodY GAF-like domain JNE42_08310 PF00460 Flagella basal body rod protein JNE42_08315 PF00460 Flagella basal body rod protein JNE42_08315 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JNE42_08320 PF02049 Flagellar hook-basal body complex protein FliE JNE42_08325 PF08345 Flagellar M-ring protein C-terminal JNE42_08325 PF01514 Secretory protein of YscJ/FliF family JNE42_08330 PF14842 FliG N-terminal domain JNE42_08330 PF14841 FliG middle domain JNE42_08330 PF01706 FliG C-terminal domain JNE42_08335 PF02108 Flagellar assembly protein FliH JNE42_08340 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JNE42_08340 PF02874 ATP synthase alpha/beta family, beta-barrel domain JNE42_08340 PF18269 T3SS EscN ATPase C-terminal domain JNE42_08345 PF02050 Flagellar FliJ protein JNE42_08350 PF03448 MgtE intracellular N domain JNE42_08355 PF02120 Flagellar hook-length control protein FliK JNE42_08360 PF03963 Flagellar hook capping protein - N-terminal region JNE42_08365 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JNE42_08365 PF00460 Flagella basal body rod protein JNE42_08370 PF06289 Flagellar and Swarming motility proteins JNE42_08375 PF03748 Flagellar basal body-associated protein FliL JNE42_08380 PF02154 Flagellar motor switch protein FliM JNE42_08380 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JNE42_08385 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JNE42_08385 PF04509 CheC-like family JNE42_08390 PF00072 Response regulator receiver domain JNE42_08395 PF04347 Flagellar biosynthesis protein, FliO JNE42_08400 PF00813 FliP family JNE42_08405 PF01313 Bacterial export proteins, family 3 JNE42_08410 PF01311 Bacterial export proteins, family 1 JNE42_08415 PF01312 FlhB HrpN YscU SpaS Family JNE42_08420 PF00771 FHIPEP family JNE42_08425 PF00448 SRP54-type protein, GTPase domain JNE42_08430 PF10609 NUBPL iron-transfer P-loop NTPase JNE42_08435 PF01339 CheB methylesterase JNE42_08435 PF00072 Response regulator receiver domain JNE42_08440 PF01627 Hpt domain JNE42_08440 PF02895 Signal transducing histidine kinase, homodimeric domain JNE42_08440 PF01584 CheW-like domain JNE42_08440 PF07194 P2 response regulator binding domain JNE42_08440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JNE42_08445 PF01584 CheW-like domain JNE42_08450 PF04509 CheC-like family JNE42_08455 PF03975 CheD chemotactic sensory transduction JNE42_08460 PF04542 Sigma-70 region 2 JNE42_08460 PF04545 Sigma-70, region 4 JNE42_08460 PF04539 Sigma-70 region 3 JNE42_08470 PF00318 Ribosomal protein S2 JNE42_08475 PF00889 Elongation factor TS JNE42_08480 PF00696 Amino acid kinase family JNE42_08485 PF01765 Ribosome recycling factor JNE42_08490 PF01255 Putative undecaprenyl diphosphate synthase JNE42_08500 PF13288 DXP reductoisomerase C-terminal domain JNE42_08500 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase JNE42_08500 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain JNE42_08505 PF17820 PDZ domain JNE42_08505 PF02163 Peptidase family M50 JNE42_08510 PF04073 Aminoacyl-tRNA editing domain JNE42_08510 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JNE42_08510 PF03129 Anticodon binding domain JNE42_08515 PF14480 DNA polymerase III polC-type N-terminus I JNE42_08515 PF00929 Exonuclease JNE42_08515 PF02811 PHP domain JNE42_08515 PF14579 Helix-hairpin-helix motif JNE42_08515 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JNE42_08515 PF11490 DNA polymerase III polC-type N-terminus II JNE42_08515 PF07733 Bacterial DNA polymerase III alpha NTPase domain JNE42_08520 PF00759 Glycosyl hydrolase family 9 JNE42_08520 PF00942 Cellulose binding domain JNE42_08525 PF02011 Glycosyl hydrolase family 48 JNE42_08525 PF00759 Glycosyl hydrolase family 9 JNE42_08525 PF00942 Cellulose binding domain JNE42_08530 PF00331 Glycosyl hydrolase family 10 JNE42_08530 PF12791 Anti-sigma factor N-terminus JNE42_08540 PF02576 RimP N-terminal domain JNE42_08540 PF17384 RimP C-terminal SH3 domain JNE42_08545 PF00575 S1 RNA binding domain JNE42_08545 PF08529 NusA N-terminal domain JNE42_08545 PF13184 NusA-like KH domain JNE42_08550 PF04296 Protein of unknown function (DUF448) JNE42_08555 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family JNE42_08560 PF00009 Elongation factor Tu GTP binding domain JNE42_08560 PF04760 Translation initiation factor IF-2, N-terminal region JNE42_08560 PF11987 Translation-initiation factor 2 JNE42_08565 PF04456 Protein of unknown function (DUF503) JNE42_08570 PF02033 Ribosome-binding factor A JNE42_08575 PF16198 tRNA pseudouridylate synthase B C-terminal domain JNE42_08575 PF01509 TruB family pseudouridylate synthase (N terminal domain) JNE42_08580 PF01687 Riboflavin kinase JNE42_08580 PF06574 FAD synthetase JNE42_08585 PF00312 Ribosomal protein S15 JNE42_08590 PF03725 3' exoribonuclease family, domain 2 JNE42_08590 PF00575 S1 RNA binding domain JNE42_08590 PF01138 3' exoribonuclease family, domain 1 JNE42_08590 PF00013 KH domain JNE42_08590 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JNE42_08595 PF01522 Polysaccharide deacetylase JNE42_08600 PF05193 Peptidase M16 inactive domain JNE42_08600 PF00675 Insulinase (Peptidase family M16) JNE42_08610 PF05239 PRC-barrel domain JNE42_08615 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JNE42_08615 PF16924 Dipicolinate synthase subunit A N-terminal domain JNE42_08620 PF02441 Flavoprotein JNE42_08625 PF01118 Semialdehyde dehydrogenase, NAD binding domain JNE42_08625 PF02774 Semialdehyde dehydrogenase, dimerisation domain JNE42_08630 PF13840 ACT domain JNE42_08630 PF00696 Amino acid kinase family JNE42_08635 PF00701 Dihydrodipicolinate synthetase family JNE42_08640 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JNE42_08640 PF00753 Metallo-beta-lactamase superfamily JNE42_08640 PF17770 Ribonuclease J C-terminal domain JNE42_08645 PF00574 Clp protease JNE42_08650 PF14035 YlzJ-like protein JNE42_08655 PF01580 FtsK/SpoIIIE family JNE42_08655 PF09397 Ftsk gamma domain JNE42_08655 PF17854 FtsK alpha domain JNE42_08660 PF07702 UTRA domain JNE42_08660 PF00392 Bacterial regulatory proteins, gntR family JNE42_08665 PF07690 Major Facilitator Superfamily JNE42_08670 PF03176 MMPL family JNE42_08675 PF05193 Peptidase M16 inactive domain JNE42_08680 PF05193 Peptidase M16 inactive domain JNE42_08680 PF00675 Insulinase (Peptidase family M16) JNE42_08690 PF03176 MMPL family JNE42_08700 PF11588 Protein of unknown function (DUF3243) JNE42_08705 PF11868 Protein of unknown function (DUF3388) JNE42_08710 PF13464 Domain of unknown function (DUF4115) JNE42_08715 PF01066 CDP-alcohol phosphatidyltransferase JNE42_08720 PF00994 Probable molybdopterin binding domain JNE42_08720 PF02464 Competence-damaged protein JNE42_08720 PF18146 Damage-inducible protein CinA KH domain JNE42_08725 PF00154 recA bacterial DNA recombination protein JNE42_08730 PF01966 HD domain JNE42_08730 PF00013 KH domain JNE42_08730 PF12072 Domain of unknown function (DUF3552) JNE42_08735 PF13277 YmdB-like protein JNE42_08740 PF04232 Stage V sporulation protein S (SpoVS) JNE42_08745 PF00873 AcrB/AcrD/AcrF family JNE42_08750 PF00107 Zinc-binding dehydrogenase JNE42_08750 PF08240 Alcohol dehydrogenase GroES-like domain JNE42_08755 PF00155 Aminotransferase class I and II JNE42_08765 PF00919 Uncharacterized protein family UPF0004 JNE42_08765 PF01938 TRAM domain JNE42_08765 PF04055 Radical SAM superfamily JNE42_08770 PF06133 Control of competence regulator ComK, YlbF/YmcA JNE42_08775 PF10628 Outer spore coat protein E (CotE) JNE42_08780 PF05190 MutS family domain IV JNE42_08780 PF00488 MutS domain V JNE42_08780 PF01624 MutS domain I JNE42_08780 PF05188 MutS domain II JNE42_08780 PF05192 MutS domain III JNE42_08785 PF08676 MutL C terminal dimerisation domain JNE42_08785 PF01119 DNA mismatch repair protein, C-terminal domain JNE42_08800 PF17735 Biofilm surface layer A JNE42_08810 PF02559 CarD-like/TRCF domain JNE42_08815 PF05908 Poly-gamma-glutamate hydrolase JNE42_08820 PF17874 MalT-like TPR region JNE42_08820 PF18801 response regulator aspartate phosphatase H, N terminal JNE42_08825 PF00082 Subtilase family JNE42_08830 PF05908 Poly-gamma-glutamate hydrolase JNE42_08835 PF02566 OsmC-like protein JNE42_08840 PF00893 Small Multidrug Resistance protein JNE42_08845 PF00893 Small Multidrug Resistance protein JNE42_08860 PF12788 YmaF family JNE42_08870 PF17209 Hfq protein JNE42_08885 PF07972 NrdI Flavodoxin like JNE42_08890 PF08343 Ribonucleotide reductase N-terminal JNE42_08890 PF00317 Ribonucleotide reductase, all-alpha domain JNE42_08890 PF02867 Ribonucleotide reductase, barrel domain JNE42_08895 PF00268 Ribonucleotide reductase, small chain JNE42_08905 PF01520 N-acetylmuramoyl-L-alanine amidase JNE42_08905 PF05036 Sporulation related domain JNE42_08910 PF00004 ATPase family associated with various cellular activities (AAA) JNE42_08910 PF17866 AAA lid domain JNE42_08915 PF01926 50S ribosome-binding GTPase JNE42_08915 PF13167 GTP-binding GTPase N-terminal JNE42_08915 PF16360 GTP-binding GTPase Middle Region JNE42_08920 PF06838 Methionine gamma-lyase JNE42_08925 PF13411 MerR HTH family regulatory protein JNE42_08930 PF00120 Glutamine synthetase, catalytic domain JNE42_08930 PF03951 Glutamine synthetase, beta-Grasp domain JNE42_08950 PF00293 NUDIX domain JNE42_08955 PF18801 response regulator aspartate phosphatase H, N terminal JNE42_08975 PF04740 LXG domain of WXG superfamily JNE42_08980 PF04634 Protein of unknown function, DUF600 JNE42_08995 PF01569 PAP2 superfamily JNE42_09000 PF08818 Domain of unknown function (DU1801) JNE42_09020 PF18801 response regulator aspartate phosphatase H, N terminal JNE42_09030 PF06912 Protein of unknown function (DUF1275) JNE42_09035 PF01068 ATP dependent DNA ligase domain JNE42_09040 PF02735 Ku70/Ku80 beta-barrel domain JNE42_09045 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) JNE42_09055 PF02082 Transcriptional regulator JNE42_09060 PF05368 NmrA-like family JNE42_09070 PF02754 Cysteine-rich domain JNE42_09075 PF11870 Domain of unknown function (DUF3390) JNE42_09075 PF02589 LUD domain JNE42_09075 PF13183 4Fe-4S dicluster domain JNE42_09080 PF02589 LUD domain JNE42_09100 PF04239 Protein of unknown function (DUF421) JNE42_09105 PF00440 Bacterial regulatory proteins, tetR family JNE42_09105 PF16295 Tetracyclin repressor-like, C-terminal domain JNE42_09110 PF00667 FAD binding domain JNE42_09110 PF00258 Flavodoxin JNE42_09110 PF00175 Oxidoreductase NAD-binding domain JNE42_09110 PF00067 Cytochrome P450 JNE42_09115 PF00089 Trypsin JNE42_09120 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase JNE42_09125 PF14040 Deoxyribonuclease NucA/NucB JNE42_09130 PF01740 STAS domain JNE42_09135 PF16800 IseA DL-endopeptidase inhibitor JNE42_09145 PF01726 LexA DNA binding domain JNE42_09145 PF00717 Peptidase S24-like JNE42_09150 PF01476 LysM domain JNE42_09155 PF00239 Resolvase, N terminal domain JNE42_09160 PF05979 Bacterial protein of unknown function (DUF896) JNE42_09165 PF00456 Transketolase, thiamine diphosphate binding domain JNE42_09165 PF02780 Transketolase, C-terminal domain JNE42_09165 PF02779 Transketolase, pyrimidine binding domain JNE42_09170 PF10747 Sporulation inhibitor of replication protein SirA JNE42_09175 PF03672 Uncharacterised protein family (UPF0154) JNE42_09180 PF09388 Spo0E like sporulation regulatory protein JNE42_09185 PF02683 Cytochrome C biogenesis protein transmembrane region JNE42_09190 PF07301 Protein of unknown function (DUF1453) JNE42_09195 PF11084 Protein of unknown function (DUF2621) JNE42_09205 PF08179 Small acid-soluble spore protein P family JNE42_09215 PF00694 Aconitase C-terminal domain JNE42_09215 PF00330 Aconitase family (aconitate hydratase) JNE42_09220 PF00578 AhpC/TSA family JNE42_09225 PF13040 Fur-regulated basic protein B JNE42_09230 PF08177 Small acid-soluble spore protein N family JNE42_09240 PF03061 Thioesterase superfamily JNE42_09250 PF01521 Iron-sulphur cluster biosynthesis JNE42_09255 PF02660 Glycerol-3-phosphate acyltransferase JNE42_09260 PF13380 CoA binding domain JNE42_09265 PF01751 Toprim domain JNE42_09265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JNE42_09265 PF00986 DNA gyrase B subunit, carboxyl terminus JNE42_09265 PF00204 DNA gyrase B JNE42_09270 PF03989 DNA gyrase C-terminal domain, beta-propeller JNE42_09270 PF00521 DNA gyrase/topoisomerase IV, subunit A JNE42_09280 PF07690 Major Facilitator Superfamily JNE42_09285 PF00180 Isocitrate/isopropylmalate dehydrogenase JNE42_09290 PF14602 Hexapeptide repeat of succinyl-transferase JNE42_09290 PF12464 Maltose acetyltransferase JNE42_09305 PF01323 DSBA-like thioredoxin domain JNE42_09310 PF02525 Flavodoxin-like fold JNE42_09320 PF00440 Bacterial regulatory proteins, tetR family JNE42_09325 PF02525 Flavodoxin-like fold JNE42_09330 PF01638 HxlR-like helix-turn-helix JNE42_09335 PF00291 Pyridoxal-phosphate dependent enzyme JNE42_09340 PF01042 Endoribonuclease L-PSP JNE42_09355 PF01494 FAD binding domain JNE42_09375 PF13411 MerR HTH family regulatory protein JNE42_09385 PF00512 His Kinase A (phospho-acceptor) domain JNE42_09385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JNE42_09390 PF00072 Response regulator receiver domain JNE42_09390 PF00486 Transcriptional regulatory protein, C terminal JNE42_09395 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain JNE42_09395 PF17189 Glycosyl hydrolase family 30 beta sandwich domain JNE42_09400 PF03422 Carbohydrate binding module (family 6) JNE42_09400 PF04616 Glycosyl hydrolases family 43 JNE42_09405 PF00171 Aldehyde dehydrogenase family JNE42_09410 PF02056 Family 4 glycosyl hydrolase JNE42_09410 PF11975 Family 4 glycosyl hydrolase C-terminal domain JNE42_09415 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_09420 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_09425 PF01547 Bacterial extracellular solute-binding protein JNE42_09430 PF00356 Bacterial regulatory proteins, lacI family JNE42_09435 PF00834 Ribulose-phosphate 3 epimerase family JNE42_09450 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JNE42_09455 PF18593 CdiI immunity protein JNE42_09465 PF14410 HNH/ENDO VII superfamily nuclease with conserved GHE residues JNE42_09465 PF04740 LXG domain of WXG superfamily JNE42_09465 PF14449 Pre-toxin TG JNE42_09470 PF01047 MarR family JNE42_09475 PF07690 Major Facilitator Superfamily JNE42_09480 PF01116 Fructose-bisphosphate aldolase class-II JNE42_09485 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JNE42_09485 PF02378 Phosphotransferase system, EIIC JNE42_09485 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JNE42_09490 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JNE42_09490 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JNE42_09495 PF00294 pfkB family carbohydrate kinase JNE42_09500 PF01418 Helix-turn-helix domain, rpiR family JNE42_09500 PF01380 SIS domain JNE42_09505 PF13091 PLD-like domain JNE42_09525 PF00171 Aldehyde dehydrogenase family JNE42_09530 PF00089 Trypsin JNE42_09540 PF00667 FAD binding domain JNE42_09540 PF00258 Flavodoxin JNE42_09540 PF00175 Oxidoreductase NAD-binding domain JNE42_09545 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JNE42_09545 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JNE42_09550 PF00501 AMP-binding enzyme JNE42_09550 PF13193 AMP-binding enzyme C-terminal domain JNE42_09550 PF16177 Acetyl-coenzyme A synthetase N-terminus JNE42_09555 PF01039 Carboxyl transferase domain JNE42_09560 PF00378 Enoyl-CoA hydratase/isomerase JNE42_09565 PF00682 HMGL-like JNE42_09570 PF00364 Biotin-requiring enzyme JNE42_09575 PF02785 Biotin carboxylase C-terminal domain JNE42_09575 PF00289 Biotin carboxylase, N-terminal domain JNE42_09575 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JNE42_09580 PF13193 AMP-binding enzyme C-terminal domain JNE42_09580 PF00501 AMP-binding enzyme JNE42_09585 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JNE42_09585 PF02770 Acyl-CoA dehydrogenase, middle domain JNE42_09585 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JNE42_09590 PF02638 Glycosyl hydrolase-like 10 JNE42_09595 PF13350 Tyrosine phosphatase family JNE42_09600 PF00455 DeoR C terminal sensor domain JNE42_09600 PF08220 DeoR-like helix-turn-helix domain JNE42_09605 PF14552 Tautomerase enzyme JNE42_09615 PF05651 Putative sugar diacid recognition JNE42_09615 PF17853 GGDEF-like domain JNE42_09615 PF13556 PucR C-terminal helix-turn-helix domain JNE42_09620 PF01565 FAD binding domain JNE42_09620 PF02913 FAD linked oxidases, C-terminal domain JNE42_09625 PF02754 Cysteine-rich domain JNE42_09625 PF13183 4Fe-4S dicluster domain JNE42_09630 PF03323 Bacillus/Clostridium GerA spore germination protein JNE42_09635 PF03845 Spore germination protein JNE42_09645 PF12728 Helix-turn-helix domain JNE42_09650 PF04138 GtrA-like protein JNE42_09655 PF00483 Nucleotidyl transferase JNE42_09660 PF09335 SNARE associated Golgi protein JNE42_09665 PF02602 Uroporphyrinogen-III synthase HemD JNE42_09675 PF00296 Luciferase-like monooxygenase JNE42_09690 PF01554 MatE JNE42_09695 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family JNE42_09700 PF01095 Pectinesterase JNE42_09705 PF04239 Protein of unknown function (DUF421) JNE42_09710 PF00355 Rieske [2Fe-2S] domain JNE42_09715 PF18267 Rubredoxin NAD+ reductase C-terminal domain JNE42_09715 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JNE42_09715 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JNE42_09715 PF07992 Pyridine nucleotide-disulphide oxidoreductase JNE42_09715 PF04324 BFD-like [2Fe-2S] binding domain JNE42_09720 PF01568 Molydopterin dinucleotide binding domain JNE42_09720 PF00384 Molybdopterin oxidoreductase JNE42_09720 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JNE42_09725 PF07992 Pyridine nucleotide-disulphide oxidoreductase JNE42_09725 PF18267 Rubredoxin NAD+ reductase C-terminal domain JNE42_09725 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JNE42_09725 PF04324 BFD-like [2Fe-2S] binding domain JNE42_09730 PF07690 Major Facilitator Superfamily JNE42_09735 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JNE42_09735 PF07992 Pyridine nucleotide-disulphide oxidoreductase JNE42_09740 PF01645 Conserved region in glutamate synthase JNE42_09740 PF04898 Glutamate synthase central domain JNE42_09740 PF01493 GXGXG motif JNE42_09740 PF00310 Glutamine amidotransferases class-II JNE42_09745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JNE42_09745 PF03466 LysR substrate binding domain JNE42_09750 PF00005 ABC transporter JNE42_09750 PF00664 ABC transporter transmembrane region JNE42_09755 PF00664 ABC transporter transmembrane region JNE42_09755 PF00005 ABC transporter JNE42_09760 PF13411 MerR HTH family regulatory protein JNE42_09760 PF06445 GyrI-like small molecule binding domain JNE42_09765 PF00583 Acetyltransferase (GNAT) family JNE42_09775 PF13302 Acetyltransferase (GNAT) domain JNE42_09780 PF00171 Aldehyde dehydrogenase family JNE42_09785 PF00696 Amino acid kinase family JNE42_09785 PF01472 PUA domain JNE42_09790 PF03807 NADP oxidoreductase coenzyme F420-dependent JNE42_09790 PF14748 Pyrroline-5-carboxylate reductase dimerisation JNE42_09795 PF00067 Cytochrome P450 JNE42_09800 PF01568 Molydopterin dinucleotide binding domain JNE42_09800 PF00384 Molybdopterin oxidoreductase JNE42_09800 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JNE42_09805 PF00457 Glycosyl hydrolases family 11 JNE42_09810 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JNE42_09810 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JNE42_09815 PF01261 Xylose isomerase-like TIM barrel JNE42_09820 PF00480 ROK family JNE42_09825 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain JNE42_09825 PF04616 Glycosyl hydrolases family 43 JNE42_09835 PF01588 Putative tRNA binding domain JNE42_09845 PF14158 YndJ-like protein JNE42_09850 PF13761 Domain of unknown function (DUF4166) JNE42_09860 PF00440 Bacterial regulatory proteins, tetR family JNE42_09860 PF13305 Tetracyclin repressor-like, C-terminal domain JNE42_09865 PF00753 Metallo-beta-lactamase superfamily JNE42_09870 PF06445 GyrI-like small molecule binding domain JNE42_09875 PF08279 HTH domain JNE42_09875 PF13280 WYL domain JNE42_09885 PF01022 Bacterial regulatory protein, arsR family JNE42_09890 PF00324 Amino acid permease JNE42_09905 PF03972 MmgE/PrpD family JNE42_09910 PF00285 Citrate synthase, C-terminal domain JNE42_09915 PF04238 Protein of unknown function (DUF420) JNE42_09925 PF06725 3D domain JNE42_09925 PF01476 LysM domain JNE42_09930 PF16124 RecQ zinc-binding JNE42_09930 PF00570 HRDC domain JNE42_09930 PF00271 Helicase conserved C-terminal domain JNE42_09930 PF00270 DEAD/DEAH box helicase JNE42_09930 PF09382 RQC domain JNE42_09940 PF01258 Prokaryotic dksA/traR C4-type zinc finger JNE42_09950 PF08000 Bacterial PH domain JNE42_09965 PF00171 Aldehyde dehydrogenase family JNE42_09970 PF13249 Squalene-hopene cyclase N-terminal domain JNE42_09970 PF13243 Squalene-hopene cyclase C-terminal domain JNE42_09975 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JNE42_09975 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JNE42_09980 PF01758 Sodium Bile acid symporter family JNE42_09985 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JNE42_09985 PF00364 Biotin-requiring enzyme JNE42_09985 PF02817 e3 binding domain JNE42_09990 PF00676 Dehydrogenase E1 component JNE42_09990 PF02779 Transketolase, pyrimidine binding domain JNE42_09990 PF16870 2-oxoglutarate dehydrogenase C-terminal JNE42_09990 PF16078 2-oxoglutarate dehydrogenase N-terminus JNE42_09995 PF00092 von Willebrand factor type A domain JNE42_10000 PF07728 AAA domain (dynein-related subfamily) JNE42_10005 PF00080 Copper/zinc superoxide dismutase (SODC) JNE42_10005 PF13627 Prokaryotic lipoprotein-attachment site JNE42_10010 PF01476 LysM domain JNE42_10010 PF00877 NlpC/P60 family JNE42_10015 PF10372 Bacterial membrane-spanning protein N-terminus JNE42_10015 PF02457 DisA bacterial checkpoint controller nucleotide-binding JNE42_10020 PF01554 MatE JNE42_10025 PF02585 GlcNAc-PI de-N-acetylase JNE42_10030 PF08830 Protein of unknown function (DUF1806) JNE42_10040 PF00892 EamA-like transporter family JNE42_10055 PF01638 HxlR-like helix-turn-helix JNE42_10060 PF00881 Nitroreductase family JNE42_10065 PF11755 Protein of unknown function (DUF3311) JNE42_10070 PF00474 Sodium:solute symporter family JNE42_10075 PF04072 Leucine carboxyl methyltransferase JNE42_10080 PF01471 Putative peptidoglycan binding domain JNE42_10080 PF17820 PDZ domain JNE42_10080 PF03572 Peptidase family S41 JNE42_10085 PF08241 Methyltransferase domain JNE42_10095 PF02557 D-alanyl-D-alanine carboxypeptidase JNE42_10100 PF01048 Phosphorylase superfamily JNE42_10105 PF14191 YodL-like JNE42_10110 PF01569 PAP2 superfamily JNE42_10115 PF14162 YozD-like protein JNE42_10130 PF06855 YozE SAM-like fold JNE42_10135 PF14122 YokU-like protein, putative antitoxin JNE42_10140 PF12544 Lysine-2,3-aminomutase JNE42_10145 PF00158 Sigma-54 interaction domain JNE42_10145 PF02954 Bacterial regulatory protein, Fis family JNE42_10145 PF13426 PAS domain JNE42_10150 PF00535 Glycosyl transferase family 2 JNE42_10165 PF12996 DUF based on E. rectale Gene description (DUF3880) JNE42_10175 PF02719 Polysaccharide biosynthesis protein JNE42_10180 PF01641 SelR domain JNE42_10185 PF01625 Peptide methionine sulfoxide reductase JNE42_10190 PF01047 MarR family JNE42_10205 PF17431 Uncharacterized YmpT-like JNE42_10210 PF09911 Uncharacterized protein conserved in bacteria (DUF2140) JNE42_10215 PF13472 GDSL-like Lipase/Acylhydrolase family JNE42_10220 PF02630 SCO1/SenC JNE42_10225 PF02645 Uncharacterised protein, DegV family COG1307 JNE42_10230 PF10751 Protein of unknown function (DUF2535) JNE42_10235 PF00585 C-terminal regulatory domain of Threonine dehydratase JNE42_10235 PF00291 Pyridoxal-phosphate dependent enzyme JNE42_10240 PF00158 Sigma-54 interaction domain JNE42_10240 PF08461 Ribonuclease R winged-helix domain JNE42_10245 PF03006 Haemolysin-III related JNE42_10255 PF00186 Dihydrofolate reductase JNE42_10260 PF00303 Thymidylate synthase JNE42_10265 PF04608 Phosphatidylglycerophosphatase A JNE42_10270 PF14005 YpjP-like protein JNE42_10275 PF04445 Putative SAM-dependent methyltransferase JNE42_10280 PF06491 Disulphide isomerase JNE42_10285 PF00920 Dehydratase family JNE42_10290 PF13769 Virulence factor JNE42_10290 PF08712 Scaffold protein Nfu/NifU N terminal JNE42_10295 PF01966 HD domain JNE42_10300 PF00255 Glutathione peroxidase JNE42_10305 PF01268 Formate--tetrahydrofolate ligase JNE42_10310 PF04204 Homoserine O-succinyltransferase JNE42_10315 PF00534 Glycosyl transferases group 1 JNE42_10315 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase JNE42_10325 PF00313 'Cold-shock' DNA-binding domain JNE42_10335 PF10782 Zinc-finger JNE42_10340 PF13456 Reverse transcriptase-like JNE42_10345 PF02592 Putative vitamin uptake transporter JNE42_10350 PF13456 Reverse transcriptase-like JNE42_10360 PF01367 5'-3' exonuclease, C-terminal SAM fold JNE42_10360 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JNE42_10370 PF00350 Dynamin family JNE42_10380 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family JNE42_10385 PF00195 Chalcone and stilbene synthases, N-terminal domain JNE42_10385 PF02797 Chalcone and stilbene synthases, C-terminal domain JNE42_10390 PF01522 Polysaccharide deacetylase JNE42_10395 PF00860 Permease family JNE42_10405 PF02074 Carboxypeptidase Taq (M32) metallopeptidase JNE42_10410 PF13307 Helicase C-terminal domain JNE42_10420 PF02926 THUMP domain JNE42_10420 PF01170 Putative RNA methylase family UPF0020 JNE42_10430 PF05103 DivIVA protein JNE42_10435 PF06908 YspA SLOG family JNE42_10440 PF11122 Inner spore coat protein D JNE42_10445 PF13482 RNase_H superfamily JNE42_10450 PF09369 Domain of unknown function (DUF1998) JNE42_10450 PF00271 Helicase conserved C-terminal domain JNE42_10450 PF00270 DEAD/DEAH box helicase JNE42_10455 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JNE42_10460 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JNE42_10475 PF14179 YppG-like protein JNE42_10495 PF10720 Protein of unknown function (DUF2515) JNE42_10500 PF03838 Recombination protein U JNE42_10505 PF00912 Transglycosylase JNE42_10505 PF00905 Penicillin binding protein transpeptidase domain JNE42_10515 PF10576 Iron-sulfur binding domain of endonuclease III JNE42_10515 PF00633 Helix-hairpin-helix motif JNE42_10515 PF00730 HhH-GPD superfamily base excision DNA repair protein JNE42_10520 PF07261 Replication initiation and membrane attachment JNE42_10525 PF01336 OB-fold nucleic acid binding domain JNE42_10525 PF00152 tRNA synthetases class II (D, K and N) JNE42_10530 PF17881 Domain of unknown function (DUF5590) JNE42_10530 PF03413 Peptidase propeptide and YPEB domain JNE42_10535 PF14084 Protein of unknown function (DUF4264) JNE42_10540 PF13307 Helicase C-terminal domain JNE42_10540 PF04851 Type III restriction enzyme, res subunit JNE42_10540 PF00929 Exonuclease JNE42_10545 PF02261 Aspartate decarboxylase JNE42_10550 PF02569 Pantoate-beta-alanine ligase JNE42_10555 PF02548 Ketopantoate hydroxymethyltransferase JNE42_10560 PF03099 Biotin/lipoate A/B protein ligase family JNE42_10560 PF02237 Biotin protein ligase C terminal domain JNE42_10560 PF08279 HTH domain JNE42_10565 PF12627 Probable RNA and SrmB- binding site of polymerase A JNE42_10565 PF13735 tRNA nucleotidyltransferase domain 2 putative JNE42_10565 PF01743 Poly A polymerase head domain JNE42_10570 PF13439 Glycosyltransferase Family 4 JNE42_10570 PF00534 Glycosyl transferases group 1 JNE42_10575 PF02585 GlcNAc-PI de-N-acetylase JNE42_10580 PF02142 MGS-like domain JNE42_10585 PF05173 Dihydrodipicolinate reductase, C-terminus JNE42_10585 PF01113 Dihydrodipicolinate reductase, N-terminus JNE42_10590 PF03819 MazG nucleotide pyrophosphohydrolase domain JNE42_10595 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JNE42_10595 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JNE42_10600 PF09577 Sporulation protein YpjB (SpoYpjB) JNE42_10605 PF07187 Protein of unknown function (DUF1405) JNE42_10610 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JNE42_10610 PF00032 Cytochrome b(C-terminal)/b6/petD JNE42_10615 PF00033 Cytochrome b/b6/petB JNE42_10620 PF00355 Rieske [2Fe-2S] domain JNE42_10625 PF10673 Protein of unknown function (DUF2487) JNE42_10630 PF08858 IDEAL domain JNE42_10630 PF08864 UPF0302 domain JNE42_10640 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JNE42_10645 PF02153 Prephenate dehydrogenase JNE42_10645 PF01842 ACT domain JNE42_10650 PF00155 Aminotransferase class I and II JNE42_10655 PF00290 Tryptophan synthase alpha chain JNE42_10660 PF00291 Pyridoxal-phosphate dependent enzyme JNE42_10665 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase JNE42_10670 PF00218 Indole-3-glycerol phosphate synthase JNE42_10675 PF02885 Glycosyl transferase family, helical bundle domain JNE42_10675 PF00591 Glycosyl transferase family, a/b domain JNE42_10680 PF04715 Anthranilate synthase component I, N terminal region JNE42_10680 PF00425 chorismate binding enzyme JNE42_10685 PF07736 Chorismate mutase type I JNE42_10690 PF01761 3-dehydroquinate synthase JNE42_10695 PF01264 Chorismate synthase JNE42_10700 PF03705 CheR methyltransferase, all-alpha domain JNE42_10700 PF01739 CheR methyltransferase, SAM binding domain JNE42_10705 PF00334 Nucleoside diphosphate kinase JNE42_10710 PF00348 Polyprenyl synthetase JNE42_10715 PF01209 ubiE/COQ5 methyltransferase family JNE42_10720 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 JNE42_10725 PF02081 Tryptophan RNA-binding attenuator protein JNE42_10730 PF01227 GTP cyclohydrolase I JNE42_10735 PF00216 Bacterial DNA-binding protein JNE42_10740 PF09547 Stage IV sporulation protein A (spore_IV_A) JNE42_10750 PF10966 Protein of unknown function (DUF2768) JNE42_10755 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JNE42_10755 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JNE42_10760 PF01926 50S ribosome-binding GTPase JNE42_10760 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JNE42_10770 PF14045 YIEGIA protein JNE42_10780 PF14140 YpzI-like protein JNE42_10785 PF01070 FMN-dependent dehydrogenase JNE42_10790 PF00575 S1 RNA binding domain JNE42_10795 PF02224 Cytidylate kinase JNE42_10800 PF17313 Family of unknown function (DUF5359) JNE42_10805 PF07238 PilZ domain JNE42_10805 PF12945 Flagellar protein YcgR JNE42_10810 PF14620 YpeB sporulation JNE42_10810 PF03413 Peptidase propeptide and YPEB domain JNE42_10815 PF07486 Cell Wall Hydrolase JNE42_10815 PF01471 Putative peptidoglycan binding domain JNE42_10820 PF13367 PrsW family intramembrane metalloprotease JNE42_10830 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JNE42_10830 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JNE42_10835 PF05389 Negative regulator of genetic competence (MecA) JNE42_10840 PF00149 Calcineurin-like phosphoesterase JNE42_10845 PF10864 Protein of unknown function (DUF2663) JNE42_10850 PF01476 LysM domain JNE42_10855 PF02517 CPBP intramembrane metalloprotease JNE42_10860 PF00270 DEAD/DEAH box helicase JNE42_10860 PF00271 Helicase conserved C-terminal domain JNE42_10865 PF14493 Helix-turn-helix domain JNE42_10875 PF12822 ECF transporter, substrate-specific component JNE42_10880 PF01842 ACT domain JNE42_10880 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JNE42_10880 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JNE42_10885 PF01551 Peptidase family M23 JNE42_10885 PF01476 LysM domain JNE42_10895 PF04542 Sigma-70 region 2 JNE42_10895 PF08281 Sigma-70, region 4 JNE42_10900 PF00512 His Kinase A (phospho-acceptor) domain JNE42_10900 PF00672 HAMP domain JNE42_10900 PF00989 PAS fold JNE42_10900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JNE42_10900 PF18698 Histidine kinase sensor domain JNE42_10905 PF00486 Transcriptional regulatory protein, C terminal JNE42_10905 PF00072 Response regulator receiver domain JNE42_10910 PF01578 Cytochrome C assembly protein JNE42_10915 PF05140 ResB-like family JNE42_10920 PF00578 AhpC/TSA family JNE42_10925 PF01479 S4 domain JNE42_10925 PF00849 RNA pseudouridylate synthase JNE42_10930 PF07670 Nucleoside recognition JNE42_10935 PF07670 Nucleoside recognition JNE42_10940 PF00768 D-alanyl-D-alanine carboxypeptidase JNE42_10940 PF07943 Penicillin-binding protein 5, C-terminal domain JNE42_10950 PF13047 Protein of unknown function (DUF3907) JNE42_10955 PF04079 Segregation and condensation complex subunit ScpB JNE42_10960 PF02616 Segregation and condensation protein ScpA JNE42_10970 PF03745 Domain of unknown function (DUF309) JNE42_10975 PF00583 Acetyltransferase (GNAT) family JNE42_10980 PF00885 6,7-dimethyl-8-ribityllumazine synthase JNE42_10985 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JNE42_10985 PF00925 GTP cyclohydrolase II JNE42_10990 PF00677 Lumazine binding domain JNE42_11010 PF07690 Major Facilitator Superfamily JNE42_11015 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JNE42_11020 PF06207 Protein of unknown function (DUF1002) JNE42_11025 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JNE42_11025 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JNE42_11030 PF03323 Bacillus/Clostridium GerA spore germination protein JNE42_11035 PF14097 Stage V sporulation protein AE1 JNE42_11040 PF03862 SpoVAC/SpoVAEB sporulation membrane protein JNE42_11045 PF07451 Stage V sporulation protein AD (SpoVAD) JNE42_11050 PF03862 SpoVAC/SpoVAEB sporulation membrane protein JNE42_11055 PF13782 Stage V sporulation protein AB JNE42_11060 PF12164 Stage V sporulation protein AA JNE42_11065 PF04542 Sigma-70 region 2 JNE42_11065 PF04539 Sigma-70 region 3 JNE42_11065 PF04545 Sigma-70, region 4 JNE42_11070 PF13581 Histidine kinase-like ATPase domain JNE42_11075 PF01740 STAS domain JNE42_11080 PF00768 D-alanyl-D-alanine carboxypeptidase JNE42_11080 PF07943 Penicillin-binding protein 5, C-terminal domain JNE42_11085 PF01048 Phosphorylase superfamily JNE42_11090 PF01676 Metalloenzyme superfamily JNE42_11095 PF00589 Phage integrase family JNE42_11095 PF02899 Phage integrase, N-terminal SAM-like domain JNE42_11100 PF14004 Protein of unknown function (DUF4227) JNE42_11105 PF01475 Ferric uptake regulator family JNE42_11110 PF01944 Stage II sporulation protein M JNE42_11115 PF05922 Peptidase inhibitor I9 JNE42_11115 PF00082 Subtilase family JNE42_11125 PF13673 Acetyltransferase (GNAT) domain JNE42_11135 PF00293 NUDIX domain JNE42_11140 PF00248 Aldo/keto reductase family JNE42_11155 PF12146 Serine aminopeptidase, S33 JNE42_11160 PF18801 response regulator aspartate phosphatase H, N terminal JNE42_11165 PF10827 Protein of unknown function (DUF2552) JNE42_11170 PF01521 Iron-sulphur cluster biosynthesis JNE42_11175 PF03330 Lytic transglycolase JNE42_11180 PF04229 GrpB protein JNE42_11180 PF13673 Acetyltransferase (GNAT) domain JNE42_11185 PF00583 Acetyltransferase (GNAT) family JNE42_11190 PF10787 Uncharacterised protein from bacillus cereus group JNE42_11195 PF11799 impB/mucB/samB family C-terminal domain JNE42_11195 PF00817 impB/mucB/samB family JNE42_11200 PF08863 YolD-like protein JNE42_11205 PF07690 Major Facilitator Superfamily JNE42_11210 PF00485 Phosphoribulokinase / Uridine kinase family JNE42_11215 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JNE42_11215 PF07992 Pyridine nucleotide-disulphide oxidoreductase JNE42_11225 PF00106 short chain dehydrogenase JNE42_11230 PF00753 Metallo-beta-lactamase superfamily JNE42_11235 PF14748 Pyrroline-5-carboxylate reductase dimerisation JNE42_11235 PF03807 NADP oxidoreductase coenzyme F420-dependent JNE42_11245 PF01546 Peptidase family M20/M25/M40 JNE42_11250 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JNE42_11255 PF12146 Serine aminopeptidase, S33 JNE42_11260 PF12897 Alanine-glyoxylate amino-transferase JNE42_11265 PF12706 Beta-lactamase superfamily domain JNE42_11270 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain JNE42_11270 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain JNE42_11275 PF00392 Bacterial regulatory proteins, gntR family JNE42_11275 PF07702 UTRA domain JNE42_11280 PF00232 Glycosyl hydrolase family 1 JNE42_11285 PF02378 Phosphotransferase system, EIIC JNE42_11290 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit JNE42_11295 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JNE42_11310 PF06800 Sugar transport protein JNE42_11315 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain JNE42_11315 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JNE42_11320 PF00817 impB/mucB/samB family JNE42_11320 PF11798 IMS family HHH motif JNE42_11320 PF11799 impB/mucB/samB family C-terminal domain JNE42_11330 PF02096 60Kd inner membrane protein JNE42_11335 PF01584 CheW-like domain JNE42_11340 PF07687 Peptidase dimerisation domain JNE42_11340 PF01546 Peptidase family M20/M25/M40 JNE42_11345 PF01039 Carboxyl transferase domain JNE42_11360 PF03734 L,D-transpeptidase catalytic domain JNE42_11365 PF06081 Aromatic acid exporter family member 1 JNE42_11365 PF11728 Putative aromatic acid exporter C-terminal domain JNE42_11370 PF00005 ABC transporter JNE42_11375 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_11380 PF00497 Bacterial extracellular solute-binding proteins, family 3 JNE42_11385 PF06491 Disulphide isomerase JNE42_11390 PF00781 Diacylglycerol kinase catalytic domain JNE42_11400 PF02817 e3 binding domain JNE42_11400 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JNE42_11400 PF00364 Biotin-requiring enzyme JNE42_11405 PF02779 Transketolase, pyrimidine binding domain JNE42_11405 PF02780 Transketolase, C-terminal domain JNE42_11410 PF00676 Dehydrogenase E1 component JNE42_11415 PF07992 Pyridine nucleotide-disulphide oxidoreductase JNE42_11415 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JNE42_11420 PF00871 Acetokinase family JNE42_11425 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JNE42_11425 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JNE42_11430 PF01515 Phosphate acetyl/butaryl transferase JNE42_11435 PF00158 Sigma-54 interaction domain JNE42_11435 PF00989 PAS fold JNE42_11435 PF02954 Bacterial regulatory protein, Fis family JNE42_11440 PF11118 Protein of unknown function (DUF2627) JNE42_11445 PF03009 Glycerophosphoryl diester phosphodiesterase family JNE42_11450 PF18801 response regulator aspartate phosphatase H, N terminal JNE42_11455 PF00072 Response regulator receiver domain JNE42_11455 PF08769 Sporulation initiation factor Spo0A C terminal JNE42_11460 PF17820 PDZ domain JNE42_11460 PF05580 SpoIVB peptidase S55 JNE42_11465 PF13476 AAA domain JNE42_11470 PF01316 Arginine repressor, DNA binding domain JNE42_11470 PF02863 Arginine repressor, C-terminal domain JNE42_11475 PF01479 S4 domain JNE42_11475 PF01728 FtsJ-like methyltransferase JNE42_11480 PF02779 Transketolase, pyrimidine binding domain JNE42_11480 PF02780 Transketolase, C-terminal domain JNE42_11480 PF13292 1-deoxy-D-xylulose-5-phosphate synthase JNE42_11485 PF00348 Polyprenyl synthetase JNE42_11490 PF02609 Exonuclease VII small subunit JNE42_11495 PF13742 OB-fold nucleic acid binding domain JNE42_11495 PF02601 Exonuclease VII, large subunit JNE42_11500 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JNE42_11500 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JNE42_11505 PF01029 NusB family JNE42_11510 PF03780 Asp23 family, cell envelope-related function JNE42_11515 PF00289 Biotin carboxylase, N-terminal domain JNE42_11515 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JNE42_11515 PF02785 Biotin carboxylase C-terminal domain JNE42_11520 PF00364 Biotin-requiring enzyme JNE42_11525 PF12685 SpoIIIAH-like protein JNE42_11535 PF09581 Stage III sporulation protein AF (Spore_III_AF) JNE42_11540 PF09546 Stage III sporulation protein AE (spore_III_AE) JNE42_11545 PF06686 Stage III sporulation protein AC/AD protein family JNE42_11550 PF06686 Stage III sporulation protein AC/AD protein family JNE42_11555 PF09548 Stage III sporulation protein AB (spore_III_AB) JNE42_11565 PF10942 Protein of unknown function (DUF2619) JNE42_11570 PF09285 Elongation factor P, C-terminal JNE42_11570 PF01132 Elongation factor P (EF-P) OB domain JNE42_11570 PF08207 Elongation factor P (EF-P) KOW-like domain JNE42_11575 PF01321 Creatinase/Prolidase N-terminal domain JNE42_11575 PF00557 Metallopeptidase family M24 JNE42_11580 PF01220 Dehydroquinase class II JNE42_11585 PF11085 Conserved membrane protein YqhR JNE42_11590 PF07136 Protein of unknown function (DUF1385) JNE42_11600 PF01734 Patatin-like phospholipase JNE42_11605 PF01325 Iron dependent repressor, N-terminal DNA binding domain JNE42_11605 PF02742 Iron dependent repressor, metal binding and dimerisation domain JNE42_11610 PF03099 Biotin/lipoate A/B protein ligase family JNE42_11615 PF00581 Rhodanese-like domain JNE42_11620 PF02347 Glycine cleavage system P-protein JNE42_11625 PF02347 Glycine cleavage system P-protein JNE42_11630 PF01571 Aminomethyltransferase folate-binding domain JNE42_11630 PF08669 Glycine cleavage T-protein C-terminal barrel domain JNE42_11635 PF00176 SNF2 family N-terminal domain JNE42_11635 PF00271 Helicase conserved C-terminal domain JNE42_11640 PF11079 Bacterial protein YqhG of unknown function JNE42_11650 PF08671 Anti-repressor SinI JNE42_11650 PF01381 Helix-turn-helix JNE42_11655 PF12389 Camelysin metallo-endopeptidase JNE42_11670 PF13028 Protein of unknown function (DUF3889) JNE42_11675 PF14038 YqzE-like protein JNE42_11695 PF07963 Prokaryotic N-terminal methylation motif JNE42_11700 PF07963 Prokaryotic N-terminal methylation motif JNE42_11705 PF00482 Type II secretion system (T2SS), protein F JNE42_11710 PF00437 Type II/IV secretion system protein JNE42_11715 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain JNE42_11715 PF01740 STAS domain JNE42_11725 PF03960 ArsC family JNE42_11730 PF11117 Protein of unknown function (DUF2626) JNE42_11735 PF00753 Metallo-beta-lactamase superfamily JNE42_11740 PF10958 Protein of unknown function (DUF2759) JNE42_11745 PF01910 Thiamine-binding protein JNE42_11750 PF07690 Major Facilitator Superfamily JNE42_11755 PF00246 Zinc carboxypeptidase JNE42_11760 PF00884 Sulfatase JNE42_11765 PF00480 ROK family JNE42_11770 PF06014 Bacterial protein of unknown function (DUF910) JNE42_11775 PF01694 Rhomboid family JNE42_11790 PF01812 5-formyltetrahydrofolate cyclo-ligase family JNE42_11795 PF00471 Ribosomal protein L33 JNE42_11810 PF00005 ABC transporter JNE42_11815 PF00005 ABC transporter JNE42_11820 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_11825 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_11830 PF12849 PBP superfamily domain JNE42_11835 PF03717 Penicillin-binding Protein dimerisation domain JNE42_11835 PF00905 Penicillin binding protein transpeptidase domain JNE42_11840 PF07690 Major Facilitator Superfamily JNE42_11845 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JNE42_11845 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JNE42_11850 PF04306 Protein of unknown function (DUF456) JNE42_11855 PF06691 Protein of unknown function (DUF1189) JNE42_11860 PF13302 Acetyltransferase (GNAT) domain JNE42_11870 PF04551 GcpE protein JNE42_11885 PF00480 ROK family JNE42_11890 PF01475 Ferric uptake regulator family JNE42_11895 PF00950 ABC 3 transport family JNE42_11900 PF00005 ABC transporter JNE42_11905 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JNE42_11905 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JNE42_11910 PF11116 Protein of unknown function (DUF2624) JNE42_11915 PF01261 Xylose isomerase-like TIM barrel JNE42_11920 PF00270 DEAD/DEAH box helicase JNE42_11920 PF00271 Helicase conserved C-terminal domain JNE42_11930 PF02401 LytB protein JNE42_11940 PF01784 NIF3 (NGG1p interacting factor 3) JNE42_11945 PF04816 tRNA (adenine(22)-N(1))-methyltransferase JNE42_11950 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JNE42_11955 PF04539 Sigma-70 region 3 JNE42_11955 PF04545 Sigma-70, region 4 JNE42_11955 PF00140 Sigma-70 factor, region 1.2 JNE42_11955 PF04542 Sigma-70 region 2 JNE42_11955 PF03979 Sigma-70 factor, region 1.1 JNE42_11960 PF10410 DnaB-helicase binding domain of primase JNE42_11960 PF01807 CHC2 zinc finger JNE42_11960 PF08275 DNA primase catalytic core, N-terminal domain JNE42_11965 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 JNE42_11970 PF03618 Kinase/pyrophosphorylase JNE42_11975 PF08279 HTH domain JNE42_11975 PF00571 CBS domain JNE42_11980 PF02092 Glycyl-tRNA synthetase beta subunit JNE42_11985 PF02091 Glycyl-tRNA synthetase alpha subunit JNE42_11990 PF11967 Recombination protein O N terminal JNE42_11990 PF02565 Recombination protein O C terminal JNE42_11995 PF14006 YqzL-like protein JNE42_12000 PF01926 50S ribosome-binding GTPase JNE42_12000 PF07650 KH domain JNE42_12005 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JNE42_12010 PF01219 Prokaryotic diacylglycerol kinase JNE42_12015 PF02130 Uncharacterized protein family UPF0054 JNE42_12020 PF07698 7TM receptor with intracellular HD hydrolase JNE42_12020 PF07697 7TM-HD extracellular JNE42_12020 PF01966 HD domain JNE42_12025 PF02562 PhoH-like protein JNE42_12030 PF06898 Putative stage IV sporulation protein YqfD JNE42_12035 PF07873 YabP family JNE42_12045 PF12127 SigmaW regulon antibacterial JNE42_12050 PF01957 NfeD-like C-terminal, partner-binding JNE42_12050 PF01972 Serine dehydrogenase proteinase JNE42_12055 PF09424 Yqey-like protein JNE42_12060 PF01165 Ribosomal protein S21 JNE42_12065 PF02690 Na+/Pi-cotransporter JNE42_12070 PF01938 TRAM domain JNE42_12070 PF00919 Uncharacterized protein family UPF0004 JNE42_12070 PF04055 Radical SAM superfamily JNE42_12075 PF04452 RNA methyltransferase JNE42_12085 PF00226 DnaJ domain JNE42_12085 PF01556 DnaJ C terminal domain JNE42_12085 PF00684 DnaJ central domain JNE42_12090 PF00012 Hsp70 protein JNE42_12095 PF01025 GrpE JNE42_12100 PF01628 HrcA protein C terminal domain JNE42_12105 PF04055 Radical SAM superfamily JNE42_12105 PF06969 HemN C-terminal domain JNE42_12110 PF06421 GTP-binding protein LepA C-terminus JNE42_12110 PF03144 Elongation factor Tu domain 2 JNE42_12110 PF00009 Elongation factor Tu GTP binding domain JNE42_12110 PF00679 Elongation factor G C-terminus JNE42_12115 PF12438 Protein of unknown function (DUF3679) JNE42_12120 PF07454 Stage II sporulation protein P (SpoIIP) JNE42_12125 PF03418 Germination protease JNE42_12130 PF01649 Ribosomal protein S20 JNE42_12135 PF06144 DNA polymerase III, delta subunit JNE42_12140 PF14141 YqzM-like protein JNE42_12145 PF03772 Competence protein JNE42_12145 PF13567 Domain of unknown function (DUF4131) JNE42_12145 PF00753 Metallo-beta-lactamase superfamily JNE42_12150 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JNE42_12155 PF10531 SLBB domain JNE42_12160 PF03807 NADP oxidoreductase coenzyme F420-dependent JNE42_12160 PF14748 Pyrroline-5-carboxylate reductase dimerisation JNE42_12165 PF13649 Methyltransferase domain JNE42_12175 PF01966 HD domain JNE42_12180 PF01467 Cytidylyltransferase-like JNE42_12185 PF01985 CRS1 / YhbY (CRM) domain JNE42_12190 PF01488 Shikimate / quinate 5-dehydrogenase JNE42_12190 PF18317 Shikimate 5'-dehydrogenase C-terminal domain JNE42_12190 PF08501 Shikimate dehydrogenase substrate binding domain JNE42_12195 PF01926 50S ribosome-binding GTPase JNE42_12205 PF08970 Sporulation inhibitor A JNE42_12215 PF00657 GDSL-like Lipase/Acylhydrolase JNE42_12220 PF01522 Polysaccharide deacetylase JNE42_12225 PF13176 Tetratricopeptide repeat JNE42_12225 PF18801 response regulator aspartate phosphatase H, N terminal JNE42_12230 PF04545 Sigma-70, region 4 JNE42_12230 PF04542 Sigma-70 region 2 JNE42_12245 PF00293 NUDIX domain JNE42_12245 PF13344 Haloacid dehalogenase-like hydrolase JNE42_12250 PF11738 Protein of unknown function (DUF3298) JNE42_12250 PF13739 Deacetylase PdaC JNE42_12250 PF01522 Polysaccharide deacetylase JNE42_12265 PF09221 Bacteriocin class IId cyclical uberolysin-like JNE42_12285 PF00005 ABC transporter JNE42_12305 PF00083 Sugar (and other) transporter JNE42_12310 PF02610 L-arabinose isomerase JNE42_12310 PF11762 L-arabinose isomerase C-terminal domain JNE42_12315 PF00596 Class II Aldolase and Adducin N-terminal domain JNE42_12325 PF00392 Bacterial regulatory proteins, gntR family JNE42_12345 PF01380 SIS domain JNE42_12350 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JNE42_12355 PF01638 HxlR-like helix-turn-helix JNE42_12360 PF07859 alpha/beta hydrolase fold JNE42_12365 PF14176 YxiJ-like protein JNE42_12395 PF00905 Penicillin binding protein transpeptidase domain JNE42_12400 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JNE42_12400 PF08028 Acyl-CoA dehydrogenase, C-terminal domain JNE42_12400 PF02770 Acyl-CoA dehydrogenase, middle domain JNE42_12405 PF00005 ABC transporter JNE42_12410 PF00497 Bacterial extracellular solute-binding proteins, family 3 JNE42_12415 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_12420 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_12425 PF08240 Alcohol dehydrogenase GroES-like domain JNE42_12425 PF00107 Zinc-binding dehydrogenase JNE42_12440 PF00465 Iron-containing alcohol dehydrogenase JNE42_12445 PF01235 Sodium:alanine symporter family JNE42_12450 PF03466 LysR substrate binding domain JNE42_12450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JNE42_12455 PF00107 Zinc-binding dehydrogenase JNE42_12455 PF08240 Alcohol dehydrogenase GroES-like domain JNE42_12460 PF08241 Methyltransferase domain JNE42_12475 PF09501 Probable sporulation protein (Bac_small_yrzI) JNE42_12480 PF14143 YrhC-like protein JNE42_12485 PF01053 Cys/Met metabolism PLP-dependent enzyme JNE42_12490 PF00291 Pyridoxal-phosphate dependent enzyme JNE42_12495 PF01048 Phosphorylase superfamily JNE42_12500 PF13649 Methyltransferase domain JNE42_12505 PF10750 Protein of unknown function (DUF2536) JNE42_12510 PF07423 Domain of unknown function (DUF1510) JNE42_12515 PF00905 Penicillin binding protein transpeptidase domain JNE42_12515 PF03717 Penicillin-binding Protein dimerisation domain JNE42_12520 PF01272 Transcription elongation factor, GreA/GreB, C-term JNE42_12520 PF03449 Transcription elongation factor, N-terminal JNE42_12525 PF00485 Phosphoribulokinase / Uridine kinase family JNE42_12530 PF16325 Peptidase family U32 C-terminal domain JNE42_12530 PF01136 Peptidase family U32 JNE42_12535 PF01136 Peptidase family U32 JNE42_12540 PF01596 O-methyltransferase JNE42_12545 PF02618 YceG-like family JNE42_12550 PF00108 Thiolase, N-terminal domain JNE42_12550 PF02803 Thiolase, C-terminal domain JNE42_12555 PF00501 AMP-binding enzyme JNE42_12555 PF13193 AMP-binding enzyme C-terminal domain JNE42_12560 PF02632 BioY family JNE42_12565 PF06949 Protein of unknown function (DUF1292) JNE42_12570 PF03652 Holliday junction resolvase JNE42_12575 PF06135 IreB regulatory phosphoprotein JNE42_12580 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JNE42_12580 PF01411 tRNA synthetases class II (A) JNE42_12580 PF02272 DHHA1 domain JNE42_12585 PF01594 AI-2E family transporter JNE42_12590 PF00005 ABC transporter JNE42_12595 PF00497 Bacterial extracellular solute-binding proteins, family 3 JNE42_12600 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_12605 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_12620 PF05239 PRC-barrel domain JNE42_12625 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain JNE42_12625 PF14490 Helix-hairpin-helix containing domain JNE42_12625 PF13538 UvrD-like helicase C-terminal domain JNE42_12630 PF13181 Tetratricopeptide repeat JNE42_12630 PF07719 Tetratricopeptide repeat JNE42_12640 PF00266 Aminotransferase class-V JNE42_12645 PF02082 Transcriptional regulator JNE42_12650 PF12002 MgsA AAA+ ATPase C terminal JNE42_12650 PF05496 Holliday junction DNA helicase RuvB P-loop domain JNE42_12650 PF16193 AAA C-terminal domain JNE42_12655 PF00899 ThiF family JNE42_12665 PF02938 GAD domain JNE42_12665 PF00152 tRNA synthetases class II (D, K and N) JNE42_12665 PF01336 OB-fold nucleic acid binding domain JNE42_12670 PF13393 Histidyl-tRNA synthetase JNE42_12670 PF03129 Anticodon binding domain JNE42_12680 PF08239 Bacterial SH3 domain JNE42_12680 PF01520 N-acetylmuramoyl-L-alanine amidase JNE42_12685 PF02580 D-Tyr-tRNA(Tyr) deacylase JNE42_12690 PF13291 ACT domain JNE42_12690 PF04607 Region found in RelA / SpoT proteins JNE42_12690 PF02824 TGS domain JNE42_12695 PF00156 Phosphoribosyl transferase domain JNE42_12700 PF10141 Single-strand DNA-specific exonuclease, C terminal domain JNE42_12700 PF17768 RecJ OB domain JNE42_12700 PF02272 DHHA1 domain JNE42_12700 PF01368 DHH family JNE42_12705 PF06305 Lipopolysaccharide assembly protein A domain JNE42_12710 PF02080 TrkA-C domain JNE42_12720 PF07549 SecD/SecF GG Motif JNE42_12720 PF02355 Protein export membrane protein JNE42_12725 PF13797 Post-transcriptional regulator JNE42_12730 PF14667 Polysaccharide biosynthesis C-terminal domain JNE42_12730 PF01943 Polysaccharide biosynthesis protein JNE42_12735 PF04239 Protein of unknown function (DUF421) JNE42_12740 PF12670 Protein of unknown function (DUF3792) JNE42_12745 PF02699 Preprotein translocase subunit JNE42_12750 PF01702 Queuine tRNA-ribosyltransferase JNE42_12755 PF02547 Queuosine biosynthesis protein JNE42_12760 PF11146 Protein of unknown function (DUF2905) JNE42_12765 PF05491 RuvB C-terminal winged helix domain JNE42_12765 PF05496 Holliday junction DNA helicase RuvB P-loop domain JNE42_12765 PF17864 RuvB AAA lid domain JNE42_12770 PF01330 RuvA N terminal domain JNE42_12770 PF07499 RuvA, C-terminal domain JNE42_12775 PF08977 Bypass of Forespore C, N terminal JNE42_12775 PF08955 BofC C-terminal domain JNE42_12795 PF01964 Radical SAM ThiC family JNE42_12795 PF13667 ThiC-associated domain JNE42_12805 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) JNE42_12810 PF01476 LysM domain JNE42_12815 PF02445 Quinolinate synthetase A protein JNE42_12820 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain JNE42_12820 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain JNE42_12825 PF00890 FAD binding domain JNE42_12825 PF02910 Fumarate reductase flavoprotein C-term JNE42_12830 PF00266 Aminotransferase class-V JNE42_12835 PF08279 HTH domain JNE42_12835 PF02829 3H domain JNE42_12840 PF00800 Prephenate dehydratase JNE42_12840 PF01842 ACT domain JNE42_12845 PF01842 ACT domain JNE42_12850 PF01018 GTP1/OBG JNE42_12850 PF09269 Domain of unknown function (DUF1967) JNE42_12850 PF01926 50S ribosome-binding GTPase JNE42_12855 PF14682 Sporulation initiation phospho-transferase B, C-terminal JNE42_12855 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain JNE42_12860 PF01016 Ribosomal L27 protein JNE42_12865 PF04327 Cysteine protease Prp JNE42_12870 PF00829 Ribosomal prokaryotic L21 protein JNE42_12875 PF02163 Peptidase family M50 JNE42_12880 PF01551 Peptidase family M23 JNE42_12885 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JNE42_12890 PF03775 Septum formation inhibitor MinC, C-terminal domain JNE42_12895 PF04093 rod shape-determining protein MreD JNE42_12900 PF04085 rod shape-determining protein MreC JNE42_12910 PF04002 RadC-like JAB domain JNE42_12915 PF02545 Maf-like protein JNE42_12925 PF01478 Type IV leader peptidase family JNE42_12925 PF06750 Bacterial Peptidase A24 N-terminal domain JNE42_12930 PF02875 Mur ligase family, glutamate ligase domain JNE42_12930 PF08245 Mur ligase middle domain JNE42_12935 PF00133 tRNA synthetases class I (I, L, M and V) JNE42_12935 PF10458 Valyl tRNA synthetase tRNA binding arm JNE42_12935 PF08264 Anticodon-binding domain of tRNA JNE42_12950 PF01476 LysM domain JNE42_12955 PF00202 Aminotransferase class-III JNE42_12960 PF00490 Delta-aminolevulinic acid dehydratase JNE42_12965 PF02602 Uroporphyrinogen-III synthase HemD JNE42_12970 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain JNE42_12970 PF03900 Porphobilinogen deaminase, C-terminal domain JNE42_12975 PF01578 Cytochrome C assembly protein JNE42_12980 PF01488 Shikimate / quinate 5-dehydrogenase JNE42_12980 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain JNE42_12980 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain JNE42_13005 PF01926 50S ribosome-binding GTPase JNE42_13010 PF00004 ATPase family associated with various cellular activities (AAA) JNE42_13010 PF05362 Lon protease (S16) C-terminal proteolytic domain JNE42_13010 PF02190 ATP-dependent protease La (LON) substrate-binding domain JNE42_13015 PF05362 Lon protease (S16) C-terminal proteolytic domain JNE42_13015 PF00004 ATPase family associated with various cellular activities (AAA) JNE42_13020 PF07724 AAA domain (Cdc48 subfamily) JNE42_13020 PF06689 ClpX C4-type zinc finger JNE42_13020 PF10431 C-terminal, D2-small domain, of ClpB protein JNE42_13025 PF05697 Bacterial trigger factor protein (TF) JNE42_13025 PF05698 Bacterial trigger factor protein (TF) C-terminus JNE42_13025 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JNE42_13035 PF00694 Aconitase C-terminal domain JNE42_13040 PF00330 Aconitase family (aconitate hydratase) JNE42_13045 PF00180 Isocitrate/isopropylmalate dehydrogenase JNE42_13050 PF00682 HMGL-like JNE42_13050 PF08502 LeuA allosteric (dimerisation) domain JNE42_13055 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain JNE42_13055 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain JNE42_13060 PF01842 ACT domain JNE42_13060 PF10369 Small subunit of acetolactate synthase JNE42_13065 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JNE42_13065 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JNE42_13065 PF00205 Thiamine pyrophosphate enzyme, central domain JNE42_13070 PF01063 Amino-transferase class IV JNE42_13075 PF10282 Lactonase, 7-bladed beta-propeller JNE42_13080 PF06803 Protein of unknown function (DUF1232) JNE42_13085 PF04914 DltD protein JNE42_13090 PF00550 Phosphopantetheine attachment site JNE42_13095 PF03062 MBOAT, membrane-bound O-acyltransferase family JNE42_13100 PF00501 AMP-binding enzyme JNE42_13100 PF13193 AMP-binding enzyme C-terminal domain JNE42_13105 PF12459 D-Ala-teichoic acid biosynthesis protein JNE42_13130 PF00145 C-5 cytosine-specific DNA methylase JNE42_13140 PF12850 Calcineurin-like phosphoesterase superfamily domain JNE42_13145 PF01725 Ham1 family JNE42_13150 PF03725 3' exoribonuclease family, domain 2 JNE42_13150 PF01138 3' exoribonuclease family, domain 1 JNE42_13155 PF10646 Sporulation and spore germination JNE42_13160 PF01177 Asp/Glu/Hydantoin racemase JNE42_13165 PF01047 MarR family JNE42_13170 PF00196 Bacterial regulatory proteins, luxR family JNE42_13175 PF03600 Citrate transporter JNE42_13180 PF03466 LysR substrate binding domain JNE42_13180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JNE42_13185 PF04303 PrpF protein JNE42_13190 PF03099 Biotin/lipoate A/B protein ligase family JNE42_13190 PF02237 Biotin protein ligase C terminal domain JNE42_13195 PF03061 Thioesterase superfamily JNE42_13200 PF13183 4Fe-4S dicluster domain JNE42_13200 PF13085 2Fe-2S iron-sulfur cluster binding domain JNE42_13205 PF02910 Fumarate reductase flavoprotein C-term JNE42_13205 PF00890 FAD binding domain JNE42_13210 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JNE42_13215 PF10702 Protein of unknown function (DUF2507) JNE42_13220 PF00696 Amino acid kinase family JNE42_13220 PF01842 ACT domain JNE42_13220 PF13840 ACT domain JNE42_13225 PF08459 UvrC Helix-hairpin-helix N-terminal JNE42_13225 PF01541 GIY-YIG catalytic domain JNE42_13225 PF02151 UvrB/uvrC motif JNE42_13230 PF00085 Thioredoxin JNE42_13235 PF06964 Alpha-L-arabinofuranosidase C-terminal domain JNE42_13240 PF01012 Electron transfer flavoprotein domain JNE42_13240 PF00766 Electron transfer flavoprotein FAD-binding domain JNE42_13245 PF01012 Electron transfer flavoprotein domain JNE42_13250 PF00378 Enoyl-CoA hydratase/isomerase JNE42_13255 PF00440 Bacterial regulatory proteins, tetR family JNE42_13255 PF08359 YsiA-like protein, C-terminal region JNE42_13260 PF13193 AMP-binding enzyme C-terminal domain JNE42_13260 PF00501 AMP-binding enzyme JNE42_13270 PF03994 Domain of Unknown Function (DUF350) JNE42_13275 PF01713 Smr domain JNE42_13275 PF00488 MutS domain V JNE42_13280 PF14716 Helix-hairpin-helix domain JNE42_13280 PF14791 DNA polymerase beta thumb JNE42_13280 PF02811 PHP domain JNE42_13285 PF02674 Colicin V production protein JNE42_13290 PF05164 Cell division protein ZapA JNE42_13295 PF11858 Domain of unknown function (DUF3378) JNE42_13295 PF01351 Ribonuclease HII JNE42_13300 PF03483 B3/4 domain JNE42_13300 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JNE42_13300 PF01588 Putative tRNA binding domain JNE42_13300 PF03484 tRNA synthetase B5 domain JNE42_13300 PF03147 Ferredoxin-fold anticodon binding domain JNE42_13305 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JNE42_13305 PF01409 tRNA synthetases class II core domain (F) JNE42_13310 PF00588 SpoU rRNA Methylase family JNE42_13310 PF08032 RNA 2'-O ribose methyltransferase substrate binding JNE42_13315 PF14098 Small, acid-soluble spore protein I JNE42_13325 PF05343 M42 glutamyl aminopeptidase JNE42_13335 PF06961 Protein of unknown function (DUF1294) JNE42_13340 PF00453 Ribosomal protein L20 JNE42_13345 PF01632 Ribosomal protein L35 JNE42_13350 PF00707 Translation initiation factor IF-3, C-terminal domain JNE42_13350 PF05198 Translation initiation factor IF-3, N-terminal domain JNE42_13365 PF13419 Haloacid dehalogenase-like hydrolase JNE42_13370 PF08447 PAS fold JNE42_13370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JNE42_13370 PF13426 PAS domain JNE42_13375 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JNE42_13375 PF03129 Anticodon binding domain JNE42_13375 PF02824 TGS domain JNE42_13375 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JNE42_13380 PF08812 YtxC-like family JNE42_13385 PF09335 SNARE associated Golgi protein JNE42_13390 PF01695 IstB-like ATP binding protein JNE42_13390 PF07319 Primosomal protein DnaI N-terminus JNE42_13395 PF07261 Replication initiation and membrane attachment JNE42_13400 PF03477 ATP cone domain JNE42_13410 PF02675 S-adenosylmethionine decarboxylase JNE42_13415 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JNE42_13415 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JNE42_13420 PF01121 Dephospho-CoA kinase JNE42_13425 PF02659 Putative manganese efflux pump JNE42_13430 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JNE42_13430 PF06827 Zinc finger found in FPG and IleRS JNE42_13430 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JNE42_13435 PF01367 5'-3' exonuclease, C-terminal SAM fold JNE42_13435 PF00476 DNA polymerase family A JNE42_13435 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JNE42_13440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JNE42_13440 PF00512 His Kinase A (phospho-acceptor) domain JNE42_13440 PF00989 PAS fold JNE42_13440 PF16736 Single Cache-like JNE42_13445 PF00486 Transcriptional regulatory protein, C terminal JNE42_13445 PF00072 Response regulator receiver domain JNE42_13450 PF00056 lactate/malate dehydrogenase, NAD binding domain JNE42_13450 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JNE42_13455 PF00180 Isocitrate/isopropylmalate dehydrogenase JNE42_13460 PF00285 Citrate synthase, C-terminal domain JNE42_13465 PF04284 Protein of unknown function (DUF441) JNE42_13470 PF01594 AI-2E family transporter JNE42_13475 PF04186 FxsA cytoplasmic membrane protein JNE42_13480 PF02887 Pyruvate kinase, alpha/beta domain JNE42_13480 PF00391 PEP-utilising enzyme, mobile domain JNE42_13480 PF00224 Pyruvate kinase, barrel domain JNE42_13485 PF00365 Phosphofructokinase JNE42_13490 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit JNE42_13495 PF01039 Carboxyl transferase domain JNE42_13495 PF17848 Acetyl-coA carboxylase zinc finger domain JNE42_13500 PF00390 Malic enzyme, N-terminal domain JNE42_13500 PF03949 Malic enzyme, NAD binding domain JNE42_13505 PF01336 OB-fold nucleic acid binding domain JNE42_13505 PF02811 PHP domain JNE42_13505 PF14579 Helix-hairpin-helix motif JNE42_13505 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JNE42_13505 PF07733 Bacterial DNA polymerase III alpha NTPase domain JNE42_13510 PF14034 Sporulation protein YtrH JNE42_13525 PF02272 DHHA1 domain JNE42_13525 PF01368 DHH family JNE42_13530 PF14007 YtpI-like protein JNE42_13535 PF07085 DRTGG domain JNE42_13535 PF00571 CBS domain JNE42_13535 PF03061 Thioesterase superfamily JNE42_13535 PF00392 Bacterial regulatory proteins, gntR family JNE42_13555 PF14698 Argininosuccinate lyase C-terminal JNE42_13555 PF00206 Lyase JNE42_13560 PF00764 Arginosuccinate synthase JNE42_13565 PF00994 Probable molybdopterin binding domain JNE42_13570 PF00871 Acetokinase family JNE42_13575 PF02384 N-6 DNA Methylase JNE42_13580 PF08534 Redoxin JNE42_13585 PF09579 Sporulation protein YtfJ (Spore_YtfJ) JNE42_13590 PF11167 Protein of unknown function (DUF2953) JNE42_13595 PF06271 RDD family JNE42_13600 PF01343 Peptidase family S49 JNE42_13605 PF01513 ATP-NAD kinase JNE42_13610 PF00271 Helicase conserved C-terminal domain JNE42_13610 PF00270 DEAD/DEAH box helicase JNE42_13610 PF03880 DbpA RNA binding domain JNE42_13615 PF00487 Fatty acid desaturase JNE42_13620 PF07730 Histidine kinase JNE42_13625 PF00196 Bacterial regulatory proteins, luxR family JNE42_13625 PF00072 Response regulator receiver domain JNE42_13630 PF01497 Periplasmic binding protein JNE42_13635 PF00486 Transcriptional regulatory protein, C terminal JNE42_13635 PF00072 Response regulator receiver domain JNE42_13640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JNE42_13645 PF00005 ABC transporter JNE42_13650 PF02687 FtsX-like permease family JNE42_13655 PF01979 Amidohydrolase family JNE42_13660 PF02525 Flavodoxin-like fold JNE42_13680 PF01810 LysE type translocator JNE42_13685 PF00501 AMP-binding enzyme JNE42_13685 PF13193 AMP-binding enzyme C-terminal domain JNE42_13690 PF00269 Small, acid-soluble spore proteins, alpha/beta type JNE42_13695 PF02568 Thiamine biosynthesis protein (ThiI) JNE42_13695 PF02926 THUMP domain JNE42_13700 PF00266 Aminotransferase class-V JNE42_13705 PF05525 Branched-chain amino acid transport protein JNE42_13710 PF05525 Branched-chain amino acid transport protein JNE42_13715 PF06160 Septation ring formation regulator, EzrA JNE42_13720 PF02811 PHP domain JNE42_13725 PF00440 Bacterial regulatory proteins, tetR family JNE42_13730 PF13185 GAF domain JNE42_13735 PF01479 S4 domain JNE42_13735 PF00163 Ribosomal protein S4/S9 N-terminal domain JNE42_13745 PF00857 Isochorismatase family JNE42_13755 PF01674 Lipase (class 2) JNE42_13760 PF03992 Antibiotic biosynthesis monooxygenase JNE42_13765 PF00579 tRNA synthetases class I (W and Y) JNE42_13765 PF01479 S4 domain JNE42_13770 PF13193 AMP-binding enzyme C-terminal domain JNE42_13770 PF00501 AMP-binding enzyme JNE42_13775 PF00583 Acetyltransferase (GNAT) family JNE42_13780 PF00571 CBS domain JNE42_13785 PF00850 Histone deacetylase domain JNE42_13790 PF00356 Bacterial regulatory proteins, lacI family JNE42_13795 PF00793 DAHP synthetase I family JNE42_13795 PF01817 Chorismate mutase type II JNE42_13800 PF11009 Protein of unknown function (DUF2847) JNE42_13805 PF12732 YtxH-like protein JNE42_13810 PF06103 Bacterial protein of unknown function (DUF948) JNE42_13815 PF08245 Mur ligase middle domain JNE42_13815 PF01225 Mur ligase family, catalytic domain JNE42_13815 PF02875 Mur ligase family, glutamate ligase domain JNE42_13820 PF01580 FtsK/SpoIIIE family JNE42_13820 PF09397 Ftsk gamma domain JNE42_13820 PF17854 FtsK alpha domain JNE42_13825 PF01588 Putative tRNA binding domain JNE42_13825 PF14794 Domain of unknown function (DUF4479) JNE42_13830 PF07285 Protein of unknown function (DUF1444) JNE42_13835 PF00085 Thioredoxin JNE42_13845 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ JNE42_13850 PF05343 M42 glutamyl aminopeptidase JNE42_13855 PF03413 Peptidase propeptide and YPEB domain JNE42_13860 PF03949 Malic enzyme, NAD binding domain JNE42_13860 PF00390 Malic enzyme, N-terminal domain JNE42_13865 PF00753 Metallo-beta-lactamase superfamily JNE42_13870 PF02390 Putative methyltransferase JNE42_13875 PF14165 YtzH-like protein JNE42_13880 PF01636 Phosphotransferase enzyme family JNE42_13885 PF00781 Diacylglycerol kinase catalytic domain JNE42_13900 PF00291 Pyridoxal-phosphate dependent enzyme JNE42_13905 PF03575 Peptidase family S51 JNE42_13910 PF01546 Peptidase family M20/M25/M40 JNE42_13915 PF00860 Permease family JNE42_13920 PF08220 DeoR-like helix-turn-helix domain JNE42_13925 PF01479 S4 domain JNE42_13925 PF00849 RNA pseudouridylate synthase JNE42_13930 PF01943 Polysaccharide biosynthesis protein JNE42_13930 PF14667 Polysaccharide biosynthesis C-terminal domain JNE42_13945 PF02028 BCCT, betaine/carnitine/choline family transporter JNE42_13950 PF03691 Uncharacterised protein family (UPF0167) JNE42_13955 PF10957 Sporulation protein Cse60 JNE42_13960 PF00581 Rhodanese-like domain JNE42_13965 PF04854 Protein of unknown function, DUF624 JNE42_13970 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JNE42_13970 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JNE42_13980 PF07470 Glycosyl Hydrolase Family 88 JNE42_13985 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_13990 PF12833 Helix-turn-helix domain JNE42_13990 PF17853 GGDEF-like domain JNE42_13995 PF01638 HxlR-like helix-turn-helix JNE42_14000 PF07690 Major Facilitator Superfamily JNE42_14005 PF00248 Aldo/keto reductase family JNE42_14010 PF13416 Bacterial extracellular solute-binding protein JNE42_14015 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_14020 PF01370 NAD dependent epimerase/dehydratase family JNE42_14025 PF01738 Dienelactone hydrolase family JNE42_14030 PF08264 Anticodon-binding domain of tRNA JNE42_14030 PF00133 tRNA synthetases class I (I, L, M and V) JNE42_14030 PF13603 Leucyl-tRNA synthetase, Domain 2 JNE42_14030 PF09334 tRNA synthetases class I (M) JNE42_14035 PF14074 Protein of unknown function (DUF4257) JNE42_14040 PF01740 STAS domain JNE42_14040 PF13426 PAS domain JNE42_14045 PF04791 LMBR1-like membrane protein JNE42_14050 PF02687 FtsX-like permease family JNE42_14050 PF12704 MacB-like periplasmic core domain JNE42_14055 PF00005 ABC transporter JNE42_14065 PF00005 ABC transporter JNE42_14070 PF00392 Bacterial regulatory proteins, gntR family JNE42_14085 PF10732 Protein of unknown function (DUF2524) JNE42_14090 PF04055 Radical SAM superfamily JNE42_14090 PF16199 Radical_SAM C-terminal domain JNE42_14095 PF06962 Putative rRNA methylase JNE42_14105 PF10776 Protein of unknown function (DUF2600) JNE42_14110 PF12146 Serine aminopeptidase, S33 JNE42_14115 PF00132 Bacterial transferase hexapeptide (six repeats) JNE42_14120 PF13537 Glutamine amidotransferase domain JNE42_14120 PF00733 Asparagine synthase JNE42_14125 PF02772 S-adenosylmethionine synthetase, central domain JNE42_14125 PF00438 S-adenosylmethionine synthetase, N-terminal domain JNE42_14125 PF02773 S-adenosylmethionine synthetase, C-terminal domain JNE42_14130 PF01293 Phosphoenolpyruvate carboxykinase JNE42_14135 PF10763 Protein of unknown function (DUF2584) JNE42_14140 PF00326 Prolyl oligopeptidase family JNE42_14145 PF01593 Flavin containing amine oxidoreductase JNE42_14150 PF00535 Glycosyl transferase family 2 JNE42_14170 PF00005 ABC transporter JNE42_14175 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_14180 PF00293 NUDIX domain JNE42_14185 PF02342 TerD domain JNE42_14200 PF05105 Bacteriophage holin family JNE42_14210 PF00210 Ferritin-like domain JNE42_14220 PF13115 YtkA-like JNE42_14225 PF02664 S-Ribosylhomocysteinase (LuxS) JNE42_14230 PF01809 Putative membrane protein insertion efficiency factor JNE42_14235 PF00484 Carbonic anhydrase JNE42_14240 PF01297 Zinc-uptake complex component A periplasmic JNE42_14240 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment JNE42_14245 PF01197 Ribosomal protein L31 JNE42_14250 PF01654 Cytochrome bd terminal oxidase subunit I JNE42_14255 PF02322 Cytochrome bd terminal oxidase subunit II JNE42_14260 PF07561 Domain of Unknown Function (DUF1540) JNE42_14270 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JNE42_14270 PF13378 Enolase C-terminal domain-like JNE42_14275 PF13193 AMP-binding enzyme C-terminal domain JNE42_14275 PF00501 AMP-binding enzyme JNE42_14280 PF00378 Enoyl-CoA hydratase/isomerase JNE42_14285 PF00561 alpha/beta hydrolase fold JNE42_14290 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JNE42_14290 PF16582 Middle domain of thiamine pyrophosphate JNE42_14290 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JNE42_14295 PF00425 chorismate binding enzyme JNE42_14300 PF01040 UbiA prenyltransferase family JNE42_14305 PF01258 Prokaryotic dksA/traR C4-type zinc finger JNE42_14310 PF03073 TspO/MBR family JNE42_14435 PF09515 Thiamine transporter protein (Thia_YuaJ) JNE42_14440 PF00583 Acetyltransferase (GNAT) family JNE42_14445 PF06803 Protein of unknown function (DUF1232) JNE42_14450 PF01098 Cell cycle protein JNE42_14455 PF01098 Cell cycle protein JNE42_14460 PF15975 Flotillin JNE42_14460 PF01145 SPFH domain / Band 7 family JNE42_14470 PF12867 DinB superfamily JNE42_14475 PF00465 Iron-containing alcohol dehydrogenase JNE42_14480 PF00171 Aldehyde dehydrogenase family JNE42_14500 PF13411 MerR HTH family regulatory protein JNE42_14500 PF06445 GyrI-like small molecule binding domain JNE42_14505 PF00583 Acetyltransferase (GNAT) family JNE42_14510 PF01471 Putative peptidoglycan binding domain JNE42_14510 PF01510 N-acetylmuramoyl-L-alanine amidase JNE42_14515 PF04688 SPP1 phage holin JNE42_14520 PF10960 BhlA holin family JNE42_14545 PF09693 Phage uncharacterised protein (Phage_XkdX) JNE42_14550 PF09636 XkdW protein JNE42_14565 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) JNE42_14570 PF04865 Baseplate J-like protein JNE42_14575 PF10934 Protein of unknown function (DUF2634) JNE42_14580 PF10844 Protein of unknown function (DUF2577) JNE42_14590 PF01476 LysM domain JNE42_14595 PF01464 Transglycosylase SLT domain JNE42_14595 PF01464 Transglycosylase SLT domain JNE42_14605 PF08890 Phage XkdN-like tail assembly chaperone protein, TAC JNE42_14615 PF09393 Phage tail tube protein JNE42_14620 PF17482 Phage tail sheath C-terminal domain JNE42_14620 PF17481 Phage tail sheath protein beta-sandwich domain JNE42_14620 PF04984 Phage tail sheath protein subtilisin-like domain JNE42_14635 PF04883 Bacteriophage HK97-gp10, putative tail-component JNE42_14640 PF12206 Domain of unknown function (DUF3599) JNE42_14645 PF11436 Protein of unknown function (DUF3199) JNE42_14650 PF05065 Phage capsid family JNE42_14655 PF14550 Putative phage serine protease XkdF JNE42_14660 PF04860 Phage portal protein JNE42_14665 PF04466 Phage terminase large subunit JNE42_14665 PF17288 Terminase RNAseH like domain JNE42_14670 PF10668 Phage terminase small subunit JNE42_14675 PF08281 Sigma-70, region 4 JNE42_14680 PF17356 Phage-like element PBSX protein XtrA JNE42_14685 PF05866 Endodeoxyribonuclease RusA JNE42_14705 PF01381 Helix-turn-helix JNE42_14715 PF04055 Radical SAM superfamily JNE42_14715 PF06968 Biotin and Thiamin Synthesis associated domain JNE42_14725 PF02673 Bacitracin resistance protein BacA JNE42_14730 PF01594 AI-2E family transporter JNE42_14740 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JNE42_14740 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JNE42_14745 PF01965 DJ-1/PfpI family JNE42_14750 PF00672 HAMP domain JNE42_14750 PF02743 Cache domain JNE42_14750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JNE42_14755 PF02743 Cache domain JNE42_14755 PF00672 HAMP domain JNE42_14755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JNE42_14760 PF00672 HAMP domain JNE42_14760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JNE42_14760 PF02743 Cache domain JNE42_14765 PF00672 HAMP domain JNE42_14765 PF02743 Cache domain JNE42_14765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JNE42_14780 PF03060 Nitronate monooxygenase JNE42_14785 PF01894 Uncharacterised protein family UPF0047 JNE42_14790 PF03471 Transporter associated domain JNE42_14790 PF01595 Cyclin M transmembrane N-terminal domain JNE42_14790 PF00571 CBS domain JNE42_14795 PF04298 Putative neutral zinc metallopeptidase JNE42_14805 PF07885 Ion channel JNE42_14805 PF02254 TrkA-N domain JNE42_14810 PF08868 YugN-like family JNE42_14820 PF00342 Phosphoglucose isomerase JNE42_14825 PF00465 Iron-containing alcohol dehydrogenase JNE42_14830 PF00465 Iron-containing alcohol dehydrogenase JNE42_14835 PF04070 Domain of unknown function (DUF378) JNE42_14840 PF00575 S1 RNA binding domain JNE42_14845 PF00155 Aminotransferase class I and II JNE42_14850 PF01037 Lrp/AsnC ligand binding domain JNE42_14855 PF08386 TAP-like protein JNE42_14855 PF00561 alpha/beta hydrolase fold JNE42_14860 PF08958 Domain of unknown function (DUF1871) JNE42_14865 PF00155 Aminotransferase class I and II JNE42_14870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JNE42_14870 PF00512 His Kinase A (phospho-acceptor) domain JNE42_14880 PF08810 Kinase associated protein B JNE42_14885 PF00929 Exonuclease JNE42_14890 PF07690 Major Facilitator Superfamily JNE42_14895 PF00912 Transglycosylase JNE42_14895 PF00905 Penicillin binding protein transpeptidase domain JNE42_14900 PF04134 Protein of unknown function, DUF393 JNE42_14905 PF17328 Family of unknown function (DUF5366) JNE42_14910 PF00989 PAS fold JNE42_14910 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain JNE42_14910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JNE42_14910 PF17203 Single cache domain 3 JNE42_14915 PF00072 Response regulator receiver domain JNE42_14920 PF02608 ABC transporter substrate-binding protein PnrA-like JNE42_14925 PF00005 ABC transporter JNE42_14930 PF02653 Branched-chain amino acid transport system / permease component JNE42_14935 PF02653 Branched-chain amino acid transport system / permease component JNE42_14940 PF03390 2-hydroxycarboxylate transporter family JNE42_14950 PF13244 Domain of unknown function (DUF4040) JNE42_14950 PF00361 Proton-conducting membrane transporter JNE42_14950 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JNE42_14955 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter JNE42_14960 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JNE42_14965 PF00361 Proton-conducting membrane transporter JNE42_14970 PF01899 Na+/H+ ion antiporter subunit JNE42_14975 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) JNE42_14980 PF03334 Na+/H+ antiporter subunit JNE42_14985 PF03061 Thioesterase superfamily JNE42_14990 PF00196 Bacterial regulatory proteins, luxR family JNE42_14990 PF00072 Response regulator receiver domain JNE42_14995 PF07730 Histidine kinase JNE42_14995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JNE42_15005 PF00348 Polyprenyl synthetase JNE42_15010 PF08181 DegQ (SacQ) family JNE42_15020 PF00563 EAL domain JNE42_15020 PF08668 HDOD domain JNE42_15025 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain JNE42_15025 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain JNE42_15025 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family JNE42_15030 PF00857 Isochorismatase family JNE42_15035 PF07997 Protein of unknown function (DUF1694) JNE42_15040 PF14166 YueH-like protein JNE42_15045 PF10676 Spore germination protein gerPA/gerPF JNE42_15050 PF10676 Spore germination protein gerPA/gerPF JNE42_15055 PF01594 AI-2E family transporter JNE42_15060 PF10842 Protein of unknown function (DUF2642) JNE42_15070 PF01966 HD domain JNE42_15075 PF00106 short chain dehydrogenase JNE42_15080 PF17355 Family of unknown function (DUF5383) JNE42_15090 PF01580 FtsK/SpoIIIE family JNE42_15090 PF12538 DNA transporter JNE42_15095 PF10140 WXG100 protein secretion system (Wss), protein YukC JNE42_15100 PF08817 WXG100 protein secretion system (Wss), protein YukD JNE42_15105 PF06013 Proteins of 100 residues with WXG JNE42_15110 PF13556 PucR C-terminal helix-turn-helix domain JNE42_15110 PF17853 GGDEF-like domain JNE42_15110 PF06018 CodY GAF-like domain JNE42_15115 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JNE42_15115 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JNE42_15120 PF02632 BioY family JNE42_15125 PF13726 Na+-H+ antiporter family JNE42_15125 PF03553 Na+/H+ antiporter family JNE42_15130 PF00883 Cytosol aminopeptidase family, catalytic domain JNE42_15130 PF02789 Cytosol aminopeptidase family, N-terminal domain JNE42_15135 PF02681 Divergent PAP2 family JNE42_15140 PF06725 3D domain JNE42_15145 PF14068 Putative membrane protein JNE42_15150 PF17302 Family of unknown function (DUF5351) JNE42_15155 PF07992 Pyridine nucleotide-disulphide oxidoreductase JNE42_15160 PF07992 Pyridine nucleotide-disulphide oxidoreductase JNE42_15175 PF13411 MerR HTH family regulatory protein JNE42_15175 PF07739 TipAS antibiotic-recognition domain JNE42_15180 PF10026 Predicted Zn-dependent protease (DUF2268) JNE42_15185 PF01521 Iron-sulphur cluster biosynthesis JNE42_15190 PF01678 Diaminopimelate epimerase JNE42_15195 PF07293 Protein of unknown function (DUF1450) JNE42_15200 PF07992 Pyridine nucleotide-disulphide oxidoreductase JNE42_15210 PF07315 Protein of unknown function (DUF1462) JNE42_15215 PF01106 NifU-like domain JNE42_15220 PF00326 Prolyl oligopeptidase family JNE42_15220 PF07676 WD40-like Beta Propeller Repeat JNE42_15225 PF08544 GHMP kinases C terminal JNE42_15225 PF00288 GHMP kinases N terminal domain JNE42_15230 PF00291 Pyridoxal-phosphate dependent enzyme JNE42_15235 PF01842 ACT domain JNE42_15235 PF00742 Homoserine dehydrogenase JNE42_15235 PF03447 Homoserine dehydrogenase, NAD binding domain JNE42_15240 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JNE42_15240 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JNE42_15250 PF04608 Phosphatidylglycerophosphatase A JNE42_15255 PF13344 Haloacid dehalogenase-like hydrolase JNE42_15260 PF01934 Protein of unknown function DUF86 JNE42_15265 PF06265 Protein of unknown function (DUF1027) JNE42_15270 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) JNE42_15275 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family JNE42_15275 PF04055 Radical SAM superfamily JNE42_15280 PF01551 Peptidase family M23 JNE42_15290 PF10903 Protein of unknown function (DUF2691) JNE42_15295 PF09560 Sporulation protein YunB (Spo_YunB) JNE42_15300 PF08827 Domain of unknown function (DUF1805) JNE42_15305 PF02872 5'-nucleotidase, C-terminal domain JNE42_15310 PF01904 Protein of unknown function DUF72 JNE42_15315 PF17853 GGDEF-like domain JNE42_15315 PF13556 PucR C-terminal helix-turn-helix domain JNE42_15315 PF07905 Purine catabolism regulatory protein-like family JNE42_15320 PF00190 Cupin JNE42_15325 PF07690 Major Facilitator Superfamily JNE42_15330 PF00266 Aminotransferase class-V JNE42_15335 PF04231 Endonuclease I JNE42_15345 PF01032 FecCD transport family JNE42_15350 PF01032 FecCD transport family JNE42_15355 PF01497 Periplasmic binding protein JNE42_15365 PF07859 alpha/beta hydrolase fold JNE42_15370 PF06146 Phosphate-starvation-inducible E JNE42_15375 PF00512 His Kinase A (phospho-acceptor) domain JNE42_15380 PF00486 Transcriptional regulatory protein, C terminal JNE42_15380 PF00072 Response regulator receiver domain JNE42_15385 PF04235 Protein of unknown function (DUF418) JNE42_15400 PF02525 Flavodoxin-like fold JNE42_15405 PF01370 NAD dependent epimerase/dehydratase family JNE42_15410 PF18665 Tetracyclin repressor-like, C-terminal domain JNE42_15410 PF00440 Bacterial regulatory proteins, tetR family JNE42_15420 PF13021 Domain of unknown function (DUF3885) JNE42_15425 PF01458 Uncharacterized protein family (UPF0051) JNE42_15430 PF01592 NifU-like N terminal domain JNE42_15435 PF00266 Aminotransferase class-V JNE42_15440 PF01458 Uncharacterized protein family (UPF0051) JNE42_15445 PF00005 ABC transporter JNE42_15455 PF02627 Carboxymuconolactone decarboxylase family JNE42_15460 PF03180 NLPA lipoprotein JNE42_15465 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_15470 PF00005 ABC transporter JNE42_15470 PF09383 NIL domain JNE42_15475 PF02036 SCP-2 sterol transfer family JNE42_15480 PF00085 Thioredoxin JNE42_15485 PF01751 Toprim domain JNE42_15490 PF10830 Protein of unknown function (DUF2553) JNE42_15495 PF01597 Glycine cleavage H-protein JNE42_15500 PF03960 ArsC family JNE42_15505 PF02770 Acyl-CoA dehydrogenase, middle domain JNE42_15505 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JNE42_15505 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JNE42_15510 PF02803 Thiolase, C-terminal domain JNE42_15510 PF00108 Thiolase, N-terminal domain JNE42_15515 PF00378 Enoyl-CoA hydratase/isomerase JNE42_15515 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JNE42_15515 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JNE42_15520 PF14115 YuzL-like protein JNE42_15530 PF07875 Coat F domain JNE42_15535 PF10835 Protein of unknown function (DUF2573) JNE42_15540 PF00005 ABC transporter JNE42_15550 PF00106 short chain dehydrogenase JNE42_15555 PF13180 PDZ domain JNE42_15560 PF00072 Response regulator receiver domain JNE42_15560 PF00486 Transcriptional regulatory protein, C terminal JNE42_15565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JNE42_15565 PF00512 His Kinase A (phospho-acceptor) domain JNE42_15565 PF00672 HAMP domain JNE42_15575 PF00440 Bacterial regulatory proteins, tetR family JNE42_15580 PF10415 Fumarase C C-terminus JNE42_15580 PF00206 Lyase JNE42_15585 PF13113 Protein of unknown function (DUF3970) JNE42_15590 PF03323 Bacillus/Clostridium GerA spore germination protein JNE42_15595 PF03845 Spore germination protein JNE42_15600 PF05504 Spore germination B3/ GerAC like, C-terminal JNE42_15610 PF00196 Bacterial regulatory proteins, luxR family JNE42_15610 PF00072 Response regulator receiver domain JNE42_15615 PF07730 Histidine kinase JNE42_15615 PF00672 HAMP domain JNE42_15615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JNE42_15620 PF09922 Cell wall-active antibiotics response 4TMS YvqF JNE42_15630 PF04012 PspA/IM30 family JNE42_15640 PF01923 Cobalamin adenosyltransferase JNE42_15645 PF00005 ABC transporter JNE42_15650 PF01032 FecCD transport family JNE42_15655 PF01497 Periplasmic binding protein JNE42_15660 PF00295 Glycosyl hydrolases family 28 JNE42_15665 PF08666 SAF domain JNE42_15665 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus JNE42_15670 PF08125 Mannitol dehydrogenase C-terminal domain JNE42_15670 PF01232 Mannitol dehydrogenase Rossmann domain JNE42_15675 PF00356 Bacterial regulatory proteins, lacI family JNE42_15680 PF02614 Glucuronate isomerase JNE42_15685 PF00512 His Kinase A (phospho-acceptor) domain JNE42_15685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JNE42_15690 PF00486 Transcriptional regulatory protein, C terminal JNE42_15690 PF00072 Response regulator receiver domain JNE42_15695 PF00005 ABC transporter JNE42_15700 PF01032 FecCD transport family JNE42_15705 PF01032 FecCD transport family JNE42_15710 PF01497 Periplasmic binding protein JNE42_15715 PF13520 Amino acid permease JNE42_15720 PF09575 Small spore protein J (Spore_SspJ) JNE42_15730 PF04307 LexA-binding, inner membrane-associated putative hydrolase JNE42_15735 PF00884 Sulfatase JNE42_15745 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_15750 PF00248 Aldo/keto reductase family JNE42_15755 PF00480 ROK family JNE42_15760 PF00999 Sodium/hydrogen exchanger family JNE42_15765 PF03458 UPF0126 domain JNE42_15770 PF02600 Disulfide bond formation protein DsbB JNE42_15775 PF13462 Thioredoxin JNE42_15780 PF00403 Heavy-metal-associated domain JNE42_15785 PF00005 ABC transporter JNE42_15790 PF00950 ABC 3 transport family JNE42_15795 PF01297 Zinc-uptake complex component A periplasmic JNE42_15805 PF00440 Bacterial regulatory proteins, tetR family JNE42_15805 PF13977 BetI-type transcriptional repressor, C-terminal JNE42_15810 PF00072 Response regulator receiver domain JNE42_15810 PF08664 YcbB domain JNE42_15815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JNE42_15820 PF00206 Lyase JNE42_15820 PF10415 Fumarase C C-terminus JNE42_15825 PF00375 Sodium:dicarboxylate symporter family JNE42_15835 PF00403 Heavy-metal-associated domain JNE42_15840 PF00403 Heavy-metal-associated domain JNE42_15845 PF02583 Metal-sensitive transcriptional repressor JNE42_15865 PF11867 Domain of unknown function (DUF3387) JNE42_15865 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) JNE42_15865 PF18766 SWI2/SNF2 ATPase JNE42_15870 PF01420 Type I restriction modification DNA specificity domain JNE42_15875 PF02384 N-6 DNA Methylase JNE42_15885 PF01668 SmpB protein JNE42_15890 PF00773 RNB domain JNE42_15890 PF08206 Ribonuclease B OB domain JNE42_15890 PF00575 S1 RNA binding domain JNE42_15890 PF17876 Cold shock domain JNE42_15895 PF12146 Serine aminopeptidase, S33 JNE42_15900 PF03840 Preprotein translocase SecG subunit JNE42_15905 PF18277 AbrB C-terminal domain JNE42_15905 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin JNE42_15910 PF01381 Helix-turn-helix JNE42_15925 PF01638 HxlR-like helix-turn-helix JNE42_15930 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_15935 PF04069 Substrate binding domain of ABC-type glycine betaine transport system JNE42_15940 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_15945 PF00005 ABC transporter JNE42_15945 PF00571 CBS domain JNE42_15950 PF12802 MarR family JNE42_15955 PF01914 MarC family integral membrane protein JNE42_15965 PF00583 Acetyltransferase (GNAT) family JNE42_15985 PF00005 ABC transporter JNE42_15995 PF00113 Enolase, C-terminal TIM barrel domain JNE42_15995 PF03952 Enolase, N-terminal domain JNE42_16000 PF01676 Metalloenzyme superfamily JNE42_16000 PF06415 BPG-independent PGAM N-terminus (iPGM_N) JNE42_16005 PF00121 Triosephosphate isomerase JNE42_16010 PF00162 Phosphoglycerate kinase JNE42_16015 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JNE42_16015 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JNE42_16020 PF04198 Putative sugar-binding domain JNE42_16025 PF00324 Amino acid permease JNE42_16030 PF00202 Aminotransferase class-III JNE42_16035 PF13426 PAS domain JNE42_16035 PF02954 Bacterial regulatory protein, Fis family JNE42_16035 PF00158 Sigma-54 interaction domain JNE42_16040 PF07729 FCD domain JNE42_16040 PF00392 Bacterial regulatory proteins, gntR family JNE42_16045 PF04552 Sigma-54, DNA binding domain JNE42_16045 PF00309 Sigma-54 factor, Activator interacting domain (AID) JNE42_16045 PF04963 Sigma-54 factor, core binding domain JNE42_16050 PF09628 YvfG protein JNE42_16055 PF01554 MatE JNE42_16060 PF00005 ABC transporter JNE42_16060 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JNE42_16065 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JNE42_16065 PF00005 ABC transporter JNE42_16070 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_16075 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_16080 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JNE42_16085 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JNE42_16090 PF00132 Bacterial transferase hexapeptide (six repeats) JNE42_16090 PF17836 PglD N-terminal domain JNE42_16095 PF02397 Bacterial sugar transferase JNE42_16100 PF01943 Polysaccharide biosynthesis protein JNE42_16100 PF14667 Polysaccharide biosynthesis C-terminal domain JNE42_16105 PF04230 Polysaccharide pyruvyl transferase JNE42_16110 PF00535 Glycosyl transferase family 2 JNE42_16120 PF13439 Glycosyltransferase Family 4 JNE42_16120 PF00534 Glycosyl transferases group 1 JNE42_16125 PF00535 Glycosyl transferase family 2 JNE42_16130 PF13439 Glycosyltransferase Family 4 JNE42_16130 PF00534 Glycosyl transferases group 1 JNE42_16135 PF02719 Polysaccharide biosynthesis protein JNE42_16140 PF13614 AAA domain JNE42_16145 PF02706 Chain length determinant protein JNE42_16150 PF08671 Anti-repressor SinI JNE42_16150 PF01381 Helix-turn-helix JNE42_16160 PF01497 Periplasmic binding protein JNE42_16165 PF01032 FecCD transport family JNE42_16170 PF01032 FecCD transport family JNE42_16175 PF01522 Polysaccharide deacetylase JNE42_16175 PF13739 Deacetylase PdaC JNE42_16175 PF11738 Protein of unknown function (DUF3298) JNE42_16180 PF12848 ABC transporter JNE42_16180 PF00005 ABC transporter JNE42_16185 PF00005 ABC transporter JNE42_16190 PF00005 ABC transporter JNE42_16195 PF12911 N-terminal TM domain of oligopeptide transport permease C JNE42_16195 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_16200 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_16205 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JNE42_16210 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase JNE42_16215 PF01497 Periplasmic binding protein JNE42_16230 PF00574 Clp protease JNE42_16235 PF03641 Possible lysine decarboxylase JNE42_16240 PF03819 MazG nucleotide pyrophosphohydrolase domain JNE42_16245 PF00916 Sulfate permease family JNE42_16245 PF01740 STAS domain JNE42_16250 PF00484 Carbonic anhydrase JNE42_16255 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JNE42_16255 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JNE42_16260 PF00545 ribonuclease JNE42_16265 PF00797 N-acetyltransferase JNE42_16270 PF00381 PTS HPr component phosphorylation site JNE42_16275 PF14527 WhiA LAGLIDADG-like domain JNE42_16275 PF02650 WhiA C-terminal HTH domain JNE42_16275 PF10298 WhiA N-terminal LAGLIDADG-like domain JNE42_16280 PF01933 Uncharacterised protein family UPF0052 JNE42_16285 PF03668 P-loop ATPase protein family JNE42_16290 PF00293 NUDIX domain JNE42_16295 PF07992 Pyridine nucleotide-disulphide oxidoreductase JNE42_16300 PF00877 NlpC/P60 family JNE42_16310 PF01502 Phosphoribosyl-AMP cyclohydrolase JNE42_16310 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase JNE42_16315 PF00977 Histidine biosynthesis protein JNE42_16320 PF00977 Histidine biosynthesis protein JNE42_16325 PF00117 Glutamine amidotransferase class-I JNE42_16330 PF00475 Imidazoleglycerol-phosphate dehydratase JNE42_16335 PF00815 Histidinol dehydrogenase JNE42_16340 PF01634 ATP phosphoribosyltransferase JNE42_16345 PF13393 Histidyl-tRNA synthetase JNE42_16350 PF13529 Peptidase_C39 like family JNE42_16355 PF13460 NAD(P)H-binding JNE42_16360 PF02082 Transcriptional regulator JNE42_16365 PF14602 Hexapeptide repeat of succinyl-transferase JNE42_16370 PF13419 Haloacid dehalogenase-like hydrolase JNE42_16375 PF07670 Nucleoside recognition JNE42_16380 PF01790 Prolipoprotein diacylglyceryl transferase JNE42_16385 PF02603 HPr Serine kinase N terminus JNE42_16385 PF07475 HPr Serine kinase C-terminal domain JNE42_16390 PF01979 Amidohydrolase family JNE42_16395 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JNE42_16400 PF07702 UTRA domain JNE42_16400 PF00392 Bacterial regulatory proteins, gntR family JNE42_16405 PF00149 Calcineurin-like phosphoesterase JNE42_16410 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV JNE42_16415 PF04024 PspC domain JNE42_16420 PF13349 Putative adhesin JNE42_16435 PF00005 ABC transporter JNE42_16435 PF17755 UvrA DNA-binding domain JNE42_16435 PF17760 UvrA interaction domain JNE42_16440 PF04851 Type III restriction enzyme, res subunit JNE42_16440 PF17757 UvrB interaction domain JNE42_16440 PF12344 Ultra-violet resistance protein B JNE42_16440 PF02151 UvrB/uvrC motif JNE42_16440 PF00271 Helicase conserved C-terminal domain JNE42_16445 PF09964 Uncharacterized protein conserved in bacteria (DUF2198) JNE42_16450 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JNE42_16450 PF00391 PEP-utilising enzyme, mobile domain JNE42_16455 PF00440 Bacterial regulatory proteins, tetR family JNE42_16460 PF07690 Major Facilitator Superfamily JNE42_16470 PF00072 Response regulator receiver domain JNE42_16470 PF00486 Transcriptional regulatory protein, C terminal JNE42_16475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JNE42_16475 PF00989 PAS fold JNE42_16475 PF00672 HAMP domain JNE42_16475 PF18698 Histidine kinase sensor domain JNE42_16475 PF00512 His Kinase A (phospho-acceptor) domain JNE42_16480 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase JNE42_16485 PF00535 Glycosyl transferase family 2 JNE42_16490 PF00324 Amino acid permease JNE42_16495 PF00881 Nitroreductase family JNE42_16500 PF01638 HxlR-like helix-turn-helix JNE42_16505 PF17820 PDZ domain JNE42_16510 PF17423 Swarming motility protein JNE42_16515 PF17820 PDZ domain JNE42_16515 PF03572 Peptidase family S41 JNE42_16515 PF01471 Putative peptidoglycan binding domain JNE42_16520 PF01925 Sulfite exporter TauE/SafE JNE42_16525 PF00877 NlpC/P60 family JNE42_16530 PF02687 FtsX-like permease family JNE42_16530 PF18075 FtsX extracellular domain JNE42_16535 PF00005 ABC transporter JNE42_16540 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JNE42_16545 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JNE42_16545 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JNE42_16565 PF02810 SEC-C motif JNE42_16565 PF07517 SecA DEAD-like domain JNE42_16565 PF01043 SecA preprotein cross-linking domain JNE42_16565 PF07516 SecA Wing and Scaffold domain JNE42_16570 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus JNE42_16570 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JNE42_16575 PF00672 HAMP domain JNE42_16575 PF02743 Cache domain JNE42_16575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JNE42_16590 PF02561 Flagellar protein FliS JNE42_16595 PF07195 Flagellar hook-associated protein 2 C-terminus JNE42_16595 PF02465 Flagellar hook-associated protein 2 N-terminus JNE42_16595 PF07196 Flagellin hook IN motif JNE42_16600 PF03646 FlaG protein JNE42_16605 PF02599 Global regulator protein family JNE42_16610 PF02623 FliW protein JNE42_16620 PF00700 Bacterial flagellin C-terminal helical region JNE42_16620 PF00669 Bacterial flagellin N-terminal helical region JNE42_16625 PF00460 Flagella basal body rod protein JNE42_16625 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JNE42_16630 PF05130 FlgN protein JNE42_16650 PF10719 Late competence development protein ComFB JNE42_16655 PF00271 Helicase conserved C-terminal domain JNE42_16655 PF04851 Type III restriction enzyme, res subunit JNE42_16660 PF02645 Uncharacterised protein, DegV family COG1307 JNE42_16665 PF00072 Response regulator receiver domain JNE42_16665 PF00196 Bacterial regulatory proteins, luxR family JNE42_16670 PF05384 Sensor protein DegS JNE42_16670 PF07730 Histidine kinase JNE42_16670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JNE42_16675 PF01205 Uncharacterized protein family UPF0029 JNE42_16675 PF09186 Domain of unknown function (DUF1949) JNE42_16685 PF00953 Glycosyl transferase family 4 JNE42_16695 PF00535 Glycosyl transferase family 2 JNE42_16700 PF02706 Chain length determinant protein JNE42_16705 PF04932 O-Antigen ligase JNE42_16710 PF16363 GDP-mannose 4,6 dehydratase JNE42_16715 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JNE42_16715 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JNE42_16715 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JNE42_16720 PF00534 Glycosyl transferases group 1 JNE42_16720 PF13439 Glycosyltransferase Family 4 JNE42_16725 PF01943 Polysaccharide biosynthesis protein JNE42_16725 PF14667 Polysaccharide biosynthesis C-terminal domain JNE42_16730 PF02397 Bacterial sugar transferase JNE42_16740 PF04122 Putative cell wall binding repeat 2 JNE42_16740 PF01520 N-acetylmuramoyl-L-alanine amidase JNE42_16745 PF04122 Putative cell wall binding repeat 2 JNE42_16745 PF01520 N-acetylmuramoyl-L-alanine amidase JNE42_16750 PF04122 Putative cell wall binding repeat 2 JNE42_16750 PF08486 Stage II sporulation protein JNE42_16760 PF03816 Cell envelope-related transcriptional attenuator domain JNE42_16765 PF02350 UDP-N-acetylglucosamine 2-epimerase JNE42_16770 PF00483 Nucleotidyl transferase JNE42_16775 PF00005 ABC transporter JNE42_16780 PF01061 ABC-2 type transporter JNE42_16785 PF00535 Glycosyl transferase family 2 JNE42_16790 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JNE42_16795 PF07478 D-ala D-ala ligase C-terminus JNE42_16795 PF01820 D-ala D-ala ligase N-terminus JNE42_16800 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase JNE42_16800 PF00535 Glycosyl transferase family 2 JNE42_16805 PF16363 GDP-mannose 4,6 dehydratase JNE42_16810 PF00483 Nucleotidyl transferase JNE42_16815 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase JNE42_16825 PF01467 Cytidylyltransferase-like JNE42_16830 PF03808 Glycosyl transferase WecB/TagA/CpsF family JNE42_16835 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase JNE42_16840 PF08239 Bacterial SH3 domain JNE42_16840 PF05036 Sporulation related domain JNE42_16840 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JNE42_16845 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase JNE42_16850 PF01238 Phosphomannose isomerase type I JNE42_16855 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_16860 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_16865 PF01547 Bacterial extracellular solute-binding protein JNE42_16870 PF00196 Bacterial regulatory proteins, luxR family JNE42_16870 PF00072 Response regulator receiver domain JNE42_16875 PF02743 Cache domain JNE42_16875 PF00672 HAMP domain JNE42_16875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JNE42_16875 PF06580 Histidine kinase JNE42_16885 PF00583 Acetyltransferase (GNAT) family JNE42_16890 PF01081 KDPG and KHG aldolase JNE42_16895 PF00294 pfkB family carbohydrate kinase JNE42_16900 PF00356 Bacterial regulatory proteins, lacI family JNE42_16905 PF04962 KduI/IolB family JNE42_16915 PF03323 Bacillus/Clostridium GerA spore germination protein JNE42_16920 PF03845 Spore germination protein JNE42_16925 PF05504 Spore germination B3/ GerAC like, C-terminal JNE42_16930 PF00534 Glycosyl transferases group 1 JNE42_16930 PF00535 Glycosyl transferase family 2 JNE42_16935 PF00083 Sugar (and other) transporter JNE42_16940 PF03816 Cell envelope-related transcriptional attenuator domain JNE42_16950 PF00877 NlpC/P60 family JNE42_16960 PF09587 Bacterial capsule synthesis protein PGA_cap JNE42_16965 PF14102 Capsule biosynthesis CapC JNE42_16970 PF08245 Mur ligase middle domain JNE42_16975 PF03323 Bacillus/Clostridium GerA spore germination protein JNE42_16985 PF05504 Spore germination B3/ GerAC like, C-terminal JNE42_16990 PF00356 Bacterial regulatory proteins, lacI family JNE42_16995 PF00294 pfkB family carbohydrate kinase JNE42_17000 PF05025 RbsD / FucU transport protein family JNE42_17005 PF00005 ABC transporter JNE42_17010 PF02653 Branched-chain amino acid transport system / permease component JNE42_17015 PF13407 Periplasmic binding protein domain JNE42_17020 PF01613 Flavin reductase like domain JNE42_17025 PF03466 LysR substrate binding domain JNE42_17025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JNE42_17030 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JNE42_17030 PF00205 Thiamine pyrophosphate enzyme, central domain JNE42_17030 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JNE42_17035 PF03306 Alpha-acetolactate decarboxylase JNE42_17040 PF01037 Lrp/AsnC ligand binding domain JNE42_17040 PF13404 AsnC-type helix-turn-helix domain JNE42_17045 PF02417 Chromate transporter JNE42_17050 PF02417 Chromate transporter JNE42_17055 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JNE42_17055 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JNE42_17055 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JNE42_17065 PF04434 SWIM zinc finger JNE42_17070 PF00176 SNF2 family N-terminal domain JNE42_17070 PF00271 Helicase conserved C-terminal domain JNE42_17070 PF12419 SNF2 Helicase protein JNE42_17075 PF13426 PAS domain JNE42_17075 PF01740 STAS domain JNE42_17090 PF14183 YwpF-like protein JNE42_17095 PF01741 Large-conductance mechanosensitive channel, MscL JNE42_17100 PF07977 FabA-like domain JNE42_17105 PF18801 response regulator aspartate phosphatase H, N terminal JNE42_17110 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JNE42_17110 PF00460 Flagella basal body rod protein JNE42_17115 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JNE42_17115 PF00460 Flagella basal body rod protein JNE42_17125 PF12116 Stage III sporulation protein D JNE42_17130 PF01047 MarR family JNE42_17135 PF07690 Major Facilitator Superfamily JNE42_17140 PF01569 PAP2 superfamily JNE42_17145 PF07690 Major Facilitator Superfamily JNE42_17150 PF00497 Bacterial extracellular solute-binding proteins, family 3 JNE42_17155 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_17160 PF00005 ABC transporter JNE42_17165 PF00909 Ammonium Transporter Family JNE42_17170 PF00543 Nitrogen regulatory protein P-II JNE42_17175 PF01551 Peptidase family M23 JNE42_17180 PF00583 Acetyltransferase (GNAT) family JNE42_17190 PF00471 Ribosomal protein L33 JNE42_17195 PF02492 CobW/HypB/UreG, nucleotide-binding domain JNE42_17195 PF07683 Cobalamin synthesis protein cobW C-terminal domain JNE42_17200 PF00253 Ribosomal protein S14p/S29e JNE42_17205 PF06463 Molybdenum Cofactor Synthesis C JNE42_17205 PF04055 Radical SAM superfamily JNE42_17210 PF02634 FdhD/NarQ family JNE42_17215 PF07690 Major Facilitator Superfamily JNE42_17220 PF00384 Molybdopterin oxidoreductase JNE42_17225 PF00092 von Willebrand factor type A domain JNE42_17230 PF00092 von Willebrand factor type A domain JNE42_17235 PF08486 Stage II sporulation protein JNE42_17240 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JNE42_17245 PF08680 TATA-box binding JNE42_17250 PF06612 Protein of unknown function (DUF1146) JNE42_17260 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain JNE42_17260 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain JNE42_17265 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JNE42_17265 PF02874 ATP synthase alpha/beta family, beta-barrel domain JNE42_17270 PF00231 ATP synthase JNE42_17275 PF02874 ATP synthase alpha/beta family, beta-barrel domain JNE42_17275 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JNE42_17275 PF00306 ATP synthase alpha/beta chain, C terminal domain JNE42_17280 PF00213 ATP synthase delta (OSCP) subunit JNE42_17285 PF00430 ATP synthase B/B' CF(0) JNE42_17290 PF00137 ATP synthase subunit C JNE42_17295 PF00119 ATP synthase A chain JNE42_17300 PF03899 ATP synthase I chain JNE42_17310 PF00464 Serine hydroxymethyltransferase JNE42_17315 PF04260 Protein of unknown function (DUF436) JNE42_17320 PF02502 Ribose/Galactose Isomerase JNE42_17325 PF01451 Low molecular weight phosphotyrosine protein phosphatase JNE42_17330 PF02659 Putative manganese efflux pump JNE42_17335 PF03481 Putative GTP-binding controlling metal-binding JNE42_17335 PF01300 Telomere recombination JNE42_17345 PF09551 Stage II sporulation protein R (spore_II_R) JNE42_17355 PF17827 PrmC N-terminal domain JNE42_17355 PF05175 Methyltransferase small domain JNE42_17360 PF03462 PCRF domain JNE42_17360 PF00472 RF-1 domain JNE42_17365 PF13411 MerR HTH family regulatory protein JNE42_17375 PF03547 Membrane transport protein JNE42_17380 PF03949 Malic enzyme, NAD binding domain JNE42_17380 PF00390 Malic enzyme, N-terminal domain JNE42_17385 PF00265 Thymidine kinase JNE42_17390 PF01197 Ribosomal protein L31 JNE42_17395 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JNE42_17395 PF07498 Rho termination factor, N-terminal domain JNE42_17395 PF07497 Rho termination factor, RNA-binding domain JNE42_17400 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded JNE42_17405 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JNE42_17410 PF00923 Transaldolase/Fructose-6-phosphate aldolase JNE42_17415 PF01116 Fructose-bisphosphate aldolase class-II JNE42_17420 PF00072 Response regulator receiver domain JNE42_17425 PF10740 Domain of unknown function (DUF2529) JNE42_17430 PF06418 CTP synthase N-terminus JNE42_17430 PF00117 Glutamine amidotransferase class-I JNE42_17435 PF05066 HB1, ASXL, restriction endonuclease HTH domain JNE42_17450 PF02770 Acyl-CoA dehydrogenase, middle domain JNE42_17450 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JNE42_17450 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JNE42_17455 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JNE42_17455 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JNE42_17455 PF02770 Acyl-CoA dehydrogenase, middle domain JNE42_17460 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JNE42_17460 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JNE42_17465 PF02803 Thiolase, C-terminal domain JNE42_17465 PF00108 Thiolase, N-terminal domain JNE42_17470 PF13183 4Fe-4S dicluster domain JNE42_17470 PF02754 Cysteine-rich domain JNE42_17475 PF13091 PLD-like domain JNE42_17480 PF03851 UV-endonuclease UvdE JNE42_17490 PF02016 LD-carboxypeptidase N-terminal domain JNE42_17490 PF17676 LD-carboxypeptidase C-terminal domain JNE42_17495 PF00005 ABC transporter JNE42_17495 PF00664 ABC transporter transmembrane region JNE42_17500 PF13396 Phospholipase_D-nuclease N-terminal JNE42_17500 PF13091 PLD-like domain JNE42_17505 PF17676 LD-carboxypeptidase C-terminal domain JNE42_17505 PF02016 LD-carboxypeptidase N-terminal domain JNE42_17515 PF05746 DALR anticodon binding domain JNE42_17515 PF03485 Arginyl tRNA synthetase N terminal domain JNE42_17515 PF00750 tRNA synthetases class I (R) JNE42_17520 PF09148 Domain of unknown function (DUF1934) JNE42_17530 PF00491 Arginase family JNE42_17535 PF17284 Spermidine synthase tetramerisation domain JNE42_17540 PF00912 Transglycosylase JNE42_17540 PF00905 Penicillin binding protein transpeptidase domain JNE42_17545 PF08741 YwhD family JNE42_17550 PF02163 Peptidase family M50 JNE42_17555 PF01361 Tautomerase enzyme JNE42_17565 PF00296 Luciferase-like monooxygenase JNE42_17570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JNE42_17570 PF03466 LysR substrate binding domain JNE42_17575 PF03358 NADPH-dependent FMN reductase JNE42_17580 PF00296 Luciferase-like monooxygenase JNE42_17585 PF00462 Glutaredoxin JNE42_17590 PF00583 Acetyltransferase (GNAT) family JNE42_17595 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_17605 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_17610 PF00005 ABC transporter JNE42_17620 PF01966 HD domain JNE42_17625 PF07293 Protein of unknown function (DUF1450) JNE42_17640 PF07238 PilZ domain JNE42_17640 PF00535 Glycosyl transferase family 2 JNE42_17650 PF03099 Biotin/lipoate A/B protein ligase family JNE42_17675 PF14449 Pre-toxin TG JNE42_17675 PF04740 LXG domain of WXG superfamily JNE42_17715 PF03737 Aldolase/RraA JNE42_17725 PF01515 Phosphate acetyl/butaryl transferase JNE42_17730 PF06778 Chlorite dismutase JNE42_17740 PF01037 Lrp/AsnC ligand binding domain JNE42_17745 PF07690 Major Facilitator Superfamily JNE42_17755 PF07883 Cupin domain JNE42_17770 PF00155 Aminotransferase class I and II JNE42_17780 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase JNE42_17785 PF04321 RmlD substrate binding domain JNE42_17790 PF16363 GDP-mannose 4,6 dehydratase JNE42_17795 PF00483 Nucleotidyl transferase JNE42_17800 PF04101 Glycosyltransferase family 28 C-terminal domain JNE42_17805 PF02348 Cytidylyltransferase JNE42_17810 PF03102 NeuB family JNE42_17810 PF08666 SAF domain JNE42_17815 PF00583 Acetyltransferase (GNAT) family JNE42_17820 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JNE42_17825 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase JNE42_17830 PF00535 Glycosyl transferase family 2 JNE42_17840 PF09671 Spore coat protein (Spore_GerQ) JNE42_17850 PF04241 Protein of unknown function (DUF423) JNE42_17855 PF00860 Permease family JNE42_17860 PF17261 Family of unknown function (DUF5327) JNE42_17865 PF00171 Aldehyde dehydrogenase family JNE42_17870 PF03167 Uracil DNA glycosylase superfamily JNE42_17875 PF00535 Glycosyl transferase family 2 JNE42_17885 PF08543 Phosphomethylpyrimidine kinase JNE42_17900 PF08244 Glycosyl hydrolases family 32 C terminal JNE42_17900 PF00251 Glycosyl hydrolases family 32 N-terminal domain JNE42_17905 PF00367 phosphotransferase system, EIIB JNE42_17905 PF02378 Phosphotransferase system, EIIC JNE42_17910 PF03123 CAT RNA binding domain JNE42_17910 PF00874 PRD domain JNE42_17920 PF05922 Peptidase inhibitor I9 JNE42_17920 PF02225 PA domain JNE42_17920 PF13860 FlgD Ig-like domain JNE42_17920 PF00082 Subtilase family JNE42_17930 PF00296 Luciferase-like monooxygenase JNE42_17935 PF00881 Nitroreductase family JNE42_17940 PF01098 Cell cycle protein JNE42_17945 PF17368 Spore morphogenesis and germination YwcE JNE42_17950 PF03626 Prokaryotic Cytochrome C oxidase subunit IV JNE42_17955 PF00510 Cytochrome c oxidase subunit III JNE42_17960 PF00115 Cytochrome C and Quinol oxidase polypeptide I JNE42_17965 PF02790 Cytochrome C oxidase subunit II, transmembrane domain JNE42_17965 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JNE42_17975 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain JNE42_17975 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain JNE42_17980 PF16363 GDP-mannose 4,6 dehydratase JNE42_17985 PF00288 GHMP kinases N terminal domain JNE42_17985 PF08544 GHMP kinases C terminal JNE42_17985 PF10509 Galactokinase galactose-binding signature JNE42_18000 PF04138 GtrA-like protein JNE42_18025 PF18801 response regulator aspartate phosphatase H, N terminal JNE42_18025 PF13181 Tetratricopeptide repeat JNE42_18035 PF04341 Protein of unknown function, DUF485 JNE42_18040 PF00474 Sodium:solute symporter family JNE42_18055 PF02581 Thiamine monophosphate synthase JNE42_18060 PF02110 Hydroxyethylthiazole kinase family JNE42_18065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JNE42_18065 PF03466 LysR substrate binding domain JNE42_18070 PF03788 LrgA family JNE42_18075 PF04172 LrgB-like family JNE42_18080 PF10672 S-adenosylmethionine-dependent methyltransferase JNE42_18080 PF17785 PUA-like domain JNE42_18085 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JNE42_18090 PF00005 ABC transporter JNE42_18095 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_18100 PF00497 Bacterial extracellular solute-binding proteins, family 3 JNE42_18105 PF18801 response regulator aspartate phosphatase H, N terminal JNE42_18115 PF04607 Region found in RelA / SpoT proteins JNE42_18120 PF02653 Branched-chain amino acid transport system / permease component JNE42_18125 PF00005 ABC transporter JNE42_18130 PF13407 Periplasmic binding protein domain JNE42_18135 PF13229 Right handed beta helix region JNE42_18140 PF01063 Amino-transferase class IV JNE42_18150 PF11975 Family 4 glycosyl hydrolase C-terminal domain JNE42_18150 PF02056 Family 4 glycosyl hydrolase JNE42_18155 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit JNE42_18160 PF02378 Phosphotransferase system, EIIC JNE42_18165 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JNE42_18170 PF05043 Mga helix-turn-helix domain JNE42_18170 PF08279 HTH domain JNE42_18170 PF00874 PRD domain JNE42_18170 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JNE42_18185 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JNE42_18185 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JNE42_18200 PF08281 Sigma-70, region 4 JNE42_18200 PF04542 Sigma-70 region 2 JNE42_18205 PF00544 Pectate lyase JNE42_18210 PF00664 ABC transporter transmembrane region JNE42_18210 PF00005 ABC transporter JNE42_18215 PF00664 ABC transporter transmembrane region JNE42_18215 PF00005 ABC transporter JNE42_18220 PF02322 Cytochrome bd terminal oxidase subunit II JNE42_18225 PF01654 Cytochrome bd terminal oxidase subunit I JNE42_18230 PF00005 ABC transporter JNE42_18235 PF01032 FecCD transport family JNE42_18240 PF01497 Periplasmic binding protein JNE42_18245 PF04203 Sortase domain JNE42_18250 PF00005 ABC transporter JNE42_18255 PF01032 FecCD transport family JNE42_18260 PF01497 Periplasmic binding protein JNE42_18270 PF05031 Iron Transport-associated domain JNE42_18275 PF05031 Iron Transport-associated domain JNE42_18280 PF01638 HxlR-like helix-turn-helix JNE42_18285 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JNE42_18290 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JNE42_18290 PF00925 GTP cyclohydrolase II JNE42_18295 PF01872 RibD C-terminal domain JNE42_18295 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JNE42_18305 PF01522 Polysaccharide deacetylase JNE42_18310 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit JNE42_18315 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JNE42_18320 PF00232 Glycosyl hydrolase family 1 JNE42_18325 PF03786 D-mannonate dehydratase (UxuA) JNE42_18330 PF02378 Phosphotransferase system, EIIC JNE42_18335 PF08279 HTH domain JNE42_18335 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JNE42_18335 PF05043 Mga helix-turn-helix domain JNE42_18335 PF00874 PRD domain JNE42_18360 PF03553 Na+/H+ antiporter family JNE42_18365 PF10415 Fumarase C C-terminus JNE42_18365 PF00206 Lyase JNE42_18370 PF00710 Asparaginase, N-terminal JNE42_18370 PF17763 Glutaminase/Asparaginase C-terminal domain JNE42_18375 PF01381 Helix-turn-helix JNE42_18385 PF17353 Family of unknown function (DUF5381) JNE42_18400 PF06013 Proteins of 100 residues with WXG JNE42_18405 PF07687 Peptidase dimerisation domain JNE42_18405 PF01546 Peptidase family M20/M25/M40 JNE42_18420 PF01418 Helix-turn-helix domain, rpiR family JNE42_18420 PF01380 SIS domain JNE42_18425 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JNE42_18425 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JNE42_18435 PF02447 GntP family permease JNE42_18440 PF01717 Cobalamin-independent synthase, Catalytic domain JNE42_18450 PF05402 Coenzyme PQQ synthesis protein D (PqqD) JNE42_18465 PF00232 Glycosyl hydrolase family 1 JNE42_18470 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JNE42_18470 PF02378 Phosphotransferase system, EIIC JNE42_18470 PF00367 phosphotransferase system, EIIB JNE42_18475 PF00874 PRD domain JNE42_18475 PF03123 CAT RNA binding domain JNE42_18480 PF09234 Domain of unknown function (DUF1963) JNE42_18490 PF02361 Cobalt transport protein JNE42_18495 PF00005 ABC transporter JNE42_18500 PF09819 ABC-type cobalt transport system, permease component JNE42_18505 PF03070 TENA/THI-4/PQQC family JNE42_18535 PF05547 Immune inhibitor A peptidase M6 JNE42_18535 PF00801 PKD domain JNE42_18540 PF03992 Antibiotic biosynthesis monooxygenase JNE42_18545 PF00881 Nitroreductase family JNE42_18550 PF01047 MarR family JNE42_18555 PF02885 Glycosyl transferase family, helical bundle domain JNE42_18555 PF00591 Glycosyl transferase family, a/b domain JNE42_18555 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain JNE42_18560 PF01773 Na+ dependent nucleoside transporter N-terminus JNE42_18560 PF07662 Na+ dependent nucleoside transporter C-terminus JNE42_18565 PF01791 DeoC/LacD family aldolase JNE42_18570 PF04198 Putative sugar-binding domain JNE42_18580 PF01757 Acyltransferase family JNE42_18585 PF07690 Major Facilitator Superfamily JNE42_18595 PF13649 Methyltransferase domain JNE42_18600 PF00072 Response regulator receiver domain JNE42_18600 PF00196 Bacterial regulatory proteins, luxR family JNE42_18610 PF13411 MerR HTH family regulatory protein JNE42_18615 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JNE42_18620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JNE42_18625 PF00324 Amino acid permease JNE42_18630 PF08713 DNA alkylation repair enzyme JNE42_18635 PF02447 GntP family permease JNE42_18640 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JNE42_18640 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JNE42_18645 PF01380 SIS domain JNE42_18645 PF01418 Helix-turn-helix domain, rpiR family JNE42_18650 PF01156 Inosine-uridine preferring nucleoside hydrolase JNE42_18685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JNE42_18685 PF03466 LysR substrate binding domain JNE42_18690 PF00356 Bacterial regulatory proteins, lacI family JNE42_18695 PF13416 Bacterial extracellular solute-binding protein JNE42_18700 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_18705 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_18710 PF07745 Glycosyl hydrolase family 53 JNE42_18715 PF08532 Beta-galactosidase trimerisation domain JNE42_18715 PF08533 Beta-galactosidase C-terminal domain JNE42_18715 PF02449 Beta-galactosidase JNE42_18720 PF03600 Citrate transporter JNE42_18730 PF12679 ABC-2 family transporter protein JNE42_18735 PF00005 ABC transporter JNE42_18740 PF08274 PhnA Zinc-Ribbon JNE42_18740 PF03831 PhnA domain JNE42_18745 PF02595 Glycerate kinase family JNE42_18750 PF02447 GntP family permease JNE42_18755 PF17853 GGDEF-like domain JNE42_18755 PF05651 Putative sugar diacid recognition JNE42_18755 PF13556 PucR C-terminal helix-turn-helix domain JNE42_18760 PF00440 Bacterial regulatory proteins, tetR family JNE42_18760 PF17922 Tetracyclin repressor-like, C-terminal domain JNE42_18765 PF07690 Major Facilitator Superfamily JNE42_18775 PF00005 ABC transporter JNE42_18780 PF18801 response regulator aspartate phosphatase H, N terminal JNE42_18785 PF03123 CAT RNA binding domain JNE42_18785 PF00874 PRD domain JNE42_18790 PF00232 Glycosyl hydrolase family 1 JNE42_18795 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JNE42_18795 PF00367 phosphotransferase system, EIIB JNE42_18795 PF02378 Phosphotransferase system, EIIC JNE42_18820 PF00293 NUDIX domain JNE42_18835 PF00324 Amino acid permease JNE42_18840 PF00356 Bacterial regulatory proteins, lacI family JNE42_18845 PF07690 Major Facilitator Superfamily JNE42_18850 PF18317 Shikimate 5'-dehydrogenase C-terminal domain JNE42_18850 PF08501 Shikimate dehydrogenase substrate binding domain JNE42_18855 PF07690 Major Facilitator Superfamily JNE42_18875 PF14410 HNH/ENDO VII superfamily nuclease with conserved GHE residues JNE42_18875 PF04740 LXG domain of WXG superfamily JNE42_18875 PF14449 Pre-toxin TG JNE42_18885 PF00232 Glycosyl hydrolase family 1 JNE42_18890 PF02378 Phosphotransferase system, EIIC JNE42_18890 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JNE42_18890 PF00367 phosphotransferase system, EIIB JNE42_18895 PF07702 UTRA domain JNE42_18895 PF00392 Bacterial regulatory proteins, gntR family JNE42_18905 PF02567 Phenazine biosynthesis-like protein JNE42_18910 PF03466 LysR substrate binding domain JNE42_18910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JNE42_18930 PF13545 Crp-like helix-turn-helix domain JNE42_18930 PF00027 Cyclic nucleotide-binding domain JNE42_18945 PF00672 HAMP domain JNE42_18945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JNE42_18945 PF00512 His Kinase A (phospho-acceptor) domain JNE42_18950 PF00072 Response regulator receiver domain JNE42_18950 PF00486 Transcriptional regulatory protein, C terminal JNE42_18955 PF03176 MMPL family JNE42_18955 PF12823 Domain of unknown function (DUF3817) JNE42_18960 PF16123 Hydroxyacylglutathione hydrolase C-terminus JNE42_18960 PF00753 Metallo-beta-lactamase superfamily JNE42_19000 PF02590 Predicted SPOUT methyltransferase JNE42_19005 PF14116 YyzF-like protein JNE42_19010 PF02361 Cobalt transport protein JNE42_19015 PF00005 ABC transporter JNE42_19015 PF12558 ATP-binding cassette cobalt transporter JNE42_19020 PF07155 ECF-type riboflavin transporter, S component JNE42_19035 PF00005 ABC transporter JNE42_19040 PF00583 Acetyltransferase (GNAT) family JNE42_19045 PF13180 PDZ domain JNE42_19050 PF00753 Metallo-beta-lactamase superfamily JNE42_19055 PF09648 YycH protein JNE42_19060 PF07435 YycH protein JNE42_19065 PF00512 His Kinase A (phospho-acceptor) domain JNE42_19065 PF13426 PAS domain JNE42_19065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JNE42_19065 PF00672 HAMP domain JNE42_19070 PF00486 Transcriptional regulatory protein, C terminal JNE42_19070 PF00072 Response regulator receiver domain JNE42_19095 PF00578 AhpC/TSA family JNE42_19105 PF04235 Protein of unknown function (DUF418) JNE42_19110 PF00709 Adenylosuccinate synthetase JNE42_19115 PF00440 Bacterial regulatory proteins, tetR family JNE42_19120 PF00067 Cytochrome P450 JNE42_19125 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JNE42_19130 PF00772 DnaB-like helicase N terminal domain JNE42_19130 PF03796 DnaB-like helicase C terminal domain JNE42_19135 PF16226 Domain of unknown function (DUF4885) JNE42_19140 PF16226 Domain of unknown function (DUF4885) JNE42_19155 PF00756 Putative esterase JNE42_19160 PF00106 short chain dehydrogenase JNE42_19165 PF00425 chorismate binding enzyme JNE42_19170 PF00501 AMP-binding enzyme JNE42_19170 PF13193 AMP-binding enzyme C-terminal domain JNE42_19175 PF00550 Phosphopantetheine attachment site JNE42_19175 PF00857 Isochorismatase family JNE42_19180 PF00668 Condensation domain JNE42_19180 PF00550 Phosphopantetheine attachment site JNE42_19180 PF00975 Thioesterase domain JNE42_19180 PF00501 AMP-binding enzyme JNE42_19180 PF13193 AMP-binding enzyme C-terminal domain JNE42_19185 PF03621 MbtH-like protein JNE42_19190 PF01497 Periplasmic binding protein JNE42_19190 PF12833 Helix-turn-helix domain JNE42_19195 PF01497 Periplasmic binding protein JNE42_19200 PF00756 Putative esterase JNE42_19205 PF14174 YycC-like protein JNE42_19210 PF07690 Major Facilitator Superfamily JNE42_19215 PF03948 Ribosomal protein L9, C-terminal domain JNE42_19215 PF01281 Ribosomal protein L9, N-terminal domain JNE42_19220 PF02272 DHHA1 domain JNE42_19220 PF01368 DHH family JNE42_19225 PF09991 Predicted membrane protein (DUF2232) JNE42_19230 PF02833 DHHA2 domain JNE42_19230 PF01368 DHH family JNE42_19235 PF13739 Deacetylase PdaC JNE42_19235 PF11738 Protein of unknown function (DUF3298) JNE42_19240 PF08281 Sigma-70, region 4 JNE42_19240 PF04542 Sigma-70 region 2 JNE42_19250 PF00199 Catalase JNE42_19250 PF06628 Catalase-related immune-responsive JNE42_19255 PF03358 NADPH-dependent FMN reductase JNE42_19260 PF01738 Dienelactone hydrolase family JNE42_19265 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JNE42_19270 PF00528 Binding-protein-dependent transport system inner membrane component JNE42_19275 PF00571 CBS domain JNE42_19275 PF00005 ABC transporter JNE42_19280 PF01084 Ribosomal protein S18 JNE42_19285 PF00436 Single-strand binding protein family JNE42_19290 PF01250 Ribosomal protein S6 JNE42_19295 PF01926 50S ribosome-binding GTPase JNE42_19295 PF06071 Protein of unknown function (DUF933) JNE42_19300 PF06107 Bacterial protein of unknown function (DUF951) JNE42_19320 PF06866 Protein of unknown function (DUF1256) JNE42_19325 PF17762 HTH domain found in ParB protein JNE42_19325 PF02195 ParB-like nuclease domain JNE42_19330 PF13614 AAA domain JNE42_19340 PF02195 ParB-like nuclease domain JNE42_19340 PF17762 HTH domain found in ParB protein JNE42_19345 PF02527 rRNA small subunit methyltransferase G JNE42_19350 PF13932 GidA associated domain JNE42_19350 PF01134 Glucose inhibited division protein A JNE42_19355 PF01926 50S ribosome-binding GTPase JNE42_19355 PF12631 MnmE helical domain JNE42_19355 PF10396 GTP-binding protein TrmE N-terminus JNE42_19360 PF01424 R3H domain JNE42_19360 PF14804 Jag N-terminus JNE42_19365 PF02096 60Kd inner membrane protein JNE42_19370 PF00825 Ribonuclease P JNE42_19375 PF00468 Ribosomal protein L34 JNE42_19380 PF01446 Replication protein JNE42_19390 PF00082 Subtilase family JNE42_19390 PF05922 Peptidase inhibitor I9 JNE42_19410 PF18801 response regulator aspartate phosphatase H, N terminal JNE42_19410 PF13181 Tetratricopeptide repeat