locus-tag class description RI02_00015 PF10764 Inhibitor of sigma-G Gin RI02_00020 PF10112 5-bromo-4-chloroindolyl phosphate hydrolysis protein RI02_00025 PF05816 Toxic anion resistance protein (TelA) RI02_00030 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain RI02_00030 PF01276 Orn/Lys/Arg decarboxylase, major domain RI02_00035 PF02223 Thymidylate kinase RI02_00040 PF06153 Cyclic-di-AMP receptor RI02_00045 PF03885 Protein of unknown function (DUF327) RI02_00050 PF09115 DNA polymerase III, delta subunit, C terminal RI02_00055 PF04468 PSP1 C-terminal conserved region RI02_00060 PF06156 Initiation control protein YabA RI02_00065 PF05175 Methyltransferase small domain RI02_00070 PF01541 GIY-YIG catalytic domain RI02_00075 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RI02_00080 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin RI02_00080 PF18277 AbrB C-terminal domain RI02_00090 PF01588 Putative tRNA binding domain RI02_00090 PF09334 tRNA synthetases class I (M) RI02_00090 PF08264 Anticodon-binding domain of tRNA RI02_00095 PF01026 TatD related DNase RI02_00100 PF06725 3D domain RI02_00100 PF07501 G5 domain RI02_00100 PF03990 G5-linked-Ubiquitin-like domain RI02_00105 PF13331 Domain of unknown function (DUF4093) RI02_00105 PF13662 Toprim domain RI02_00110 PF00398 Ribosomal RNA adenine dimethylase RI02_00115 PF05582 YabG peptidase U57 RI02_00120 PF06257 Biofilm formation stimulator VEG RI02_00125 PF00269 Small, acid-soluble spore proteins, alpha/beta type RI02_00130 PF08544 GHMP kinases C terminal RI02_00130 PF00288 GHMP kinases N terminal domain RI02_00135 PF09182 Bacterial purine repressor, N-terminal RI02_00135 PF00156 Phosphoribosyl transferase domain RI02_00140 PF01042 Endoribonuclease L-PSP RI02_00145 PF04026 SpoVG RI02_00150 PF00483 Nucleotidyl transferase RI02_00150 PF00132 Bacterial transferase hexapeptide (six repeats) RI02_00155 PF14572 Phosphoribosyl synthetase-associated domain RI02_00155 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RI02_00160 PF14693 Ribosomal protein TL5, C-terminal domain RI02_00160 PF01386 Ribosomal L25p family RI02_00165 PF01195 Peptidyl-tRNA hydrolase RI02_00170 PF10955 Protein of unknown function (DUF2757) RI02_00175 PF17757 UvrB interaction domain RI02_00175 PF02559 CarD-like/TRCF domain RI02_00175 PF00270 DEAD/DEAH box helicase RI02_00175 PF00271 Helicase conserved C-terminal domain RI02_00175 PF03461 TRCF domain RI02_00180 PF15714 Stage V sporulation protein T C-terminal, transcription factor RI02_00180 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin RI02_00185 PF01943 Polysaccharide biosynthesis protein RI02_00185 PF14667 Polysaccharide biosynthesis C-terminal domain RI02_00190 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RI02_00190 PF03819 MazG nucleotide pyrophosphohydrolase domain RI02_00195 PF01479 S4 domain RI02_00200 PF07873 YabP family RI02_00205 PF09578 Spore cortex protein YabQ (Spore_YabQ) RI02_00210 PF04977 Septum formation initiator RI02_00215 PF00575 S1 RNA binding domain RI02_00230 PF07228 Stage II sporulation protein E (SpoIIE) RI02_00235 PF00092 von Willebrand factor type A domain RI02_00240 PF00069 Protein kinase domain RI02_00245 PF09179 TilS substrate binding domain RI02_00245 PF01171 PP-loop family RI02_00245 PF11734 TilS substrate C-terminal domain RI02_00250 PF00156 Phosphoribosyl transferase domain RI02_00255 PF01434 Peptidase family M41 RI02_00255 PF06480 FtsH Extracellular RI02_00255 PF17862 AAA+ lid domain RI02_00255 PF00004 ATPase family associated with various cellular activities (AAA) RI02_00260 PF03309 Type III pantothenate kinase RI02_00265 PF01430 Hsp33 protein RI02_00270 PF13145 PPIC-type PPIASE domain RI02_00275 PF00291 Pyridoxal-phosphate dependent enzyme RI02_00280 PF04715 Anthranilate synthase component I, N terminal region RI02_00280 PF00425 chorismate binding enzyme RI02_00285 PF00117 Glutamine amidotransferase class-I RI02_00290 PF01063 Amino-transferase class IV RI02_00295 PF00809 Pterin binding enzyme RI02_00300 PF02152 Dihydroneopterin aldolase RI02_00305 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RI02_00310 PF01381 Helix-turn-helix RI02_00315 PF01207 Dihydrouridine synthase (Dus) RI02_00320 PF01336 OB-fold nucleic acid binding domain RI02_00320 PF00152 tRNA synthetases class II (D, K and N) RI02_00400 PF17727 CtsR C-terminal dimerization domain RI02_00400 PF05848 CtsR N-terminal HTH domain RI02_00405 PF02151 UvrB/uvrC motif RI02_00410 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain RI02_00415 PF02861 Clp amino terminal domain, pathogenicity island component RI02_00415 PF17871 AAA lid domain RI02_00415 PF00004 ATPase family associated with various cellular activities (AAA) RI02_00415 PF10431 C-terminal, D2-small domain, of ClpB protein RI02_00415 PF07724 AAA domain (Cdc48 subfamily) RI02_00420 PF18073 Rubredoxin metal binding domain RI02_00425 PF02457 DisA bacterial checkpoint controller nucleotide-binding RI02_00425 PF10635 DisA bacterial checkpoint controller linker region RI02_00435 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RI02_00440 PF02542 YgbB family RI02_00445 PF00749 tRNA synthetases class I (E and Q), catalytic domain RI02_00450 PF00132 Bacterial transferase hexapeptide (six repeats) RI02_00450 PF06426 Serine acetyltransferase, N-terminal RI02_00455 PF09190 DALR domain RI02_00455 PF01406 tRNA synthetases class I (C) catalytic domain RI02_00460 PF00636 Ribonuclease III domain RI02_00465 PF00588 SpoU rRNA Methylase family RI02_00465 PF08032 RNA 2'-O ribose methyltransferase substrate binding RI02_00470 PF05991 YacP-like NYN domain RI02_00475 PF08281 Sigma-70, region 4 RI02_00475 PF04542 Sigma-70 region 2 RI02_00480 PF00471 Ribosomal protein L33 RI02_00485 PF00584 SecE/Sec61-gamma subunits of protein translocation complex RI02_00490 PF02357 Transcription termination factor nusG RI02_00490 PF00467 KOW motif RI02_00495 PF00298 Ribosomal protein L11, RNA binding domain RI02_00495 PF03946 Ribosomal protein L11, N-terminal domain RI02_00500 PF00687 Ribosomal protein L1p/L10e family RI02_00505 PF00466 Ribosomal protein L10 RI02_00510 PF16320 Ribosomal protein L7/L12 dimerisation domain RI02_00510 PF00542 Ribosomal protein L7/L12 C-terminal domain RI02_00515 PF05175 Methyltransferase small domain RI02_00520 PF00562 RNA polymerase Rpb2, domain 6 RI02_00520 PF10385 RNA polymerase beta subunit external 1 domain RI02_00520 PF04565 RNA polymerase Rpb2, domain 3 RI02_00520 PF04561 RNA polymerase Rpb2, domain 2 RI02_00520 PF04563 RNA polymerase beta subunit RI02_00520 PF04560 RNA polymerase Rpb2, domain 7 RI02_00525 PF04997 RNA polymerase Rpb1, domain 1 RI02_00525 PF05000 RNA polymerase Rpb1, domain 4 RI02_00525 PF04983 RNA polymerase Rpb1, domain 3 RI02_00525 PF00623 RNA polymerase Rpb1, domain 2 RI02_00525 PF04998 RNA polymerase Rpb1, domain 5 RI02_00530 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RI02_00535 PF00164 Ribosomal protein S12/S23 RI02_00540 PF00177 Ribosomal protein S7p/S5e RI02_00545 PF03144 Elongation factor Tu domain 2 RI02_00545 PF00009 Elongation factor Tu GTP binding domain RI02_00545 PF03764 Elongation factor G, domain IV RI02_00545 PF14492 Elongation Factor G, domain II RI02_00545 PF00679 Elongation factor G C-terminus RI02_00550 PF00009 Elongation factor Tu GTP binding domain RI02_00550 PF03144 Elongation factor Tu domain 2 RI02_00550 PF03143 Elongation factor Tu C-terminal domain RI02_00555 PF12146 Serine aminopeptidase, S33 RI02_00560 PF00338 Ribosomal protein S10p/S20e RI02_00565 PF00297 Ribosomal protein L3 RI02_00570 PF00573 Ribosomal protein L4/L1 family RI02_00575 PF00276 Ribosomal protein L23 RI02_00580 PF00181 Ribosomal Proteins L2, RNA binding domain RI02_00580 PF03947 Ribosomal Proteins L2, C-terminal domain RI02_00585 PF00203 Ribosomal protein S19 RI02_00590 PF00237 Ribosomal protein L22p/L17e RI02_00595 PF00189 Ribosomal protein S3, C-terminal domain RI02_00595 PF07650 KH domain RI02_00600 PF00252 Ribosomal protein L16p/L10e RI02_00605 PF00831 Ribosomal L29 protein RI02_00610 PF00366 Ribosomal protein S17 RI02_00615 PF00238 Ribosomal protein L14p/L23e RI02_00620 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 RI02_00620 PF00467 KOW motif RI02_00625 PF00281 Ribosomal protein L5 RI02_00625 PF00673 ribosomal L5P family C-terminus RI02_00630 PF00253 Ribosomal protein S14p/S29e RI02_00635 PF00410 Ribosomal protein S8 RI02_00640 PF00347 Ribosomal protein L6 RI02_00645 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RI02_00650 PF00333 Ribosomal protein S5, N-terminal domain RI02_00650 PF03719 Ribosomal protein S5, C-terminal domain RI02_00655 PF00327 Ribosomal protein L30p/L7e RI02_00660 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RI02_00665 PF00344 SecY translocase RI02_00670 PF05191 Adenylate kinase, active site lid RI02_00675 PF00557 Metallopeptidase family M24 RI02_00685 PF01176 Translation initiation factor 1A / IF-1 RI02_00690 PF00444 Ribosomal protein L36 RI02_00695 PF00416 Ribosomal protein S13/S18 RI02_00700 PF00411 Ribosomal protein S11 RI02_00705 PF01000 RNA polymerase Rpb3/RpoA insert domain RI02_00705 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RI02_00705 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RI02_00710 PF01196 Ribosomal protein L17 RI02_00715 PF00005 ABC transporter RI02_00720 PF00005 ABC transporter RI02_00725 PF02361 Cobalt transport protein RI02_00730 PF01416 tRNA pseudouridine synthase RI02_00735 PF00572 Ribosomal protein L13 RI02_00740 PF00380 Ribosomal protein S9/S16 RI02_00745 PF13302 Acetyltransferase (GNAT) domain RI02_00770 PF00005 ABC transporter RI02_00785 PF10730 Protein of unknown function (DUF2521) RI02_00790 PF01520 N-acetylmuramoyl-L-alanine amidase RI02_00795 PF10609 NUBPL iron-transfer P-loop NTPase RI02_00800 PF17898 Spore germination GerD central core domain RI02_00805 PF14089 KinB-signalling pathway activation in sporulation RI02_00810 PF01522 Polysaccharide deacetylase RI02_00840 PF00700 Bacterial flagellin C-terminal helical region RI02_00840 PF00669 Bacterial flagellin N-terminal helical region RI02_00845 PF01740 STAS domain RI02_00845 PF00916 Sulfate permease family RI02_00850 PF01758 Sodium Bile acid symporter family RI02_00855 PF07075 Protein of unknown function (DUF1343) RI02_00860 PF00933 Glycosyl hydrolase family 3 N terminal domain RI02_00860 PF01915 Glycosyl hydrolase family 3 C-terminal domain RI02_00865 PF00144 Beta-lactamase RI02_00870 PF02378 Phosphotransferase system, EIIC RI02_00870 PF00367 phosphotransferase system, EIIB RI02_00875 PF01380 SIS domain RI02_00875 PF01418 Helix-turn-helix domain, rpiR family RI02_00880 PF13580 SIS domain RI02_00910 PF00491 Arginase family RI02_00915 PF08281 Sigma-70, region 4 RI02_00915 PF04542 Sigma-70 region 2 RI02_00920 PF13490 Putative zinc-finger RI02_00925 PF02457 DisA bacterial checkpoint controller nucleotide-binding RI02_00930 PF07949 YbbR-like protein RI02_00935 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RI02_00935 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RI02_00935 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RI02_00935 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RI02_00940 PF01380 SIS domain RI02_00960 PF13732 Domain of unknown function (DUF4162) RI02_00960 PF00005 ABC transporter RI02_00970 PF00005 ABC transporter RI02_00975 PF02687 FtsX-like permease family RI02_00975 PF00005 ABC transporter RI02_00975 PF12704 MacB-like periplasmic core domain RI02_00980 PF10400 Virulence activator alpha C-term RI02_00980 PF03551 Transcriptional regulator PadR-like family RI02_00995 PF04055 Radical SAM superfamily RI02_00995 PF13186 Iron-sulfur cluster-binding domain RI02_01000 PF02517 CPBP intramembrane metalloprotease RI02_01005 PF00005 ABC transporter RI02_01020 PF13905 Thioredoxin-like RI02_01030 PF04235 Protein of unknown function (DUF418) RI02_01040 PF00005 ABC transporter RI02_01050 PF01381 Helix-turn-helix RI02_01060 PF00561 alpha/beta hydrolase fold RI02_01065 PF12833 Helix-turn-helix domain RI02_01080 PF00005 ABC transporter RI02_01095 PF00324 Amino acid permease RI02_01100 PF03009 Glycerophosphoryl diester phosphodiesterase family RI02_01105 PF07690 Major Facilitator Superfamily RI02_01115 PF03190 Protein of unknown function, DUF255 RI02_01120 PF00109 Beta-ketoacyl synthase, N-terminal domain RI02_01120 PF02801 Beta-ketoacyl synthase, C-terminal domain RI02_01150 PF02583 Metal-sensitive transcriptional repressor RI02_01155 PF13686 DsrE/DsrF/DrsH-like family RI02_01165 PF01206 Sulfurtransferase TusA RI02_01165 PF00581 Rhodanese-like domain RI02_01170 PF00581 Rhodanese-like domain RI02_01170 PF00753 Metallo-beta-lactamase superfamily RI02_01175 PF01206 Sulfurtransferase TusA RI02_01180 PF01925 Sulfite exporter TauE/SafE RI02_01190 PF03129 Anticodon binding domain RI02_01190 PF09180 Prolyl-tRNA synthetase, C-terminal RI02_01190 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RI02_01195 PF07690 Major Facilitator Superfamily RI02_01210 PF01047 MarR family RI02_01220 PF04463 Protein of unknown function (DUF523) RI02_01235 PF00248 Aldo/keto reductase family RI02_01240 PF00465 Iron-containing alcohol dehydrogenase RI02_01245 PF12368 Rhodanase C-terminal RI02_01245 PF17773 UPF0176 acylphosphatase like domain RI02_01245 PF00581 Rhodanese-like domain RI02_01250 PF13520 Amino acid permease RI02_01260 PF00874 PRD domain RI02_01260 PF03123 CAT RNA binding domain RI02_01265 PF00367 phosphotransferase system, EIIB RI02_01265 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RI02_01265 PF02378 Phosphotransferase system, EIIC RI02_01270 PF00232 Glycosyl hydrolase family 1 RI02_01285 PF08279 HTH domain RI02_01285 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RI02_01285 PF00874 PRD domain RI02_01285 PF05043 Mga helix-turn-helix domain RI02_01290 PF00480 ROK family RI02_01295 PF09261 Alpha mannosidase middle domain RI02_01295 PF01074 Glycosyl hydrolases family 38 N-terminal domain RI02_01295 PF07748 Glycosyl hydrolases family 38 C-terminal domain RI02_01305 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RI02_01315 PF00082 Subtilase family RI02_01315 PF17936 Bacterial Ig domain RI02_01330 PF00324 Amino acid permease RI02_01335 PF02574 Homocysteine S-methyltransferase RI02_01340 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) RI02_01340 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 RI02_01365 PF07690 Major Facilitator Superfamily RI02_01370 PF00583 Acetyltransferase (GNAT) family RI02_01385 PF00082 Subtilase family RI02_01390 PF01425 Amidase RI02_01395 PF00440 Bacterial regulatory proteins, tetR family RI02_01400 PF07883 Cupin domain RI02_01405 PF01047 MarR family RI02_01410 PF13193 AMP-binding enzyme C-terminal domain RI02_01410 PF00501 AMP-binding enzyme RI02_01415 PF13520 Amino acid permease RI02_01425 PF00561 alpha/beta hydrolase fold RI02_01430 PF01235 Sodium:alanine symporter family RI02_01435 PF04960 Glutaminase RI02_01440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RI02_01445 PF00072 Response regulator receiver domain RI02_01445 PF08664 YcbB domain RI02_01450 PF05225 helix-turn-helix, Psq domain RI02_01450 PF02810 SEC-C motif RI02_01455 PF17118 Domain of unknown function (DUF5105) RI02_01455 PF11611 Domain of unknown function (DUF4352) RI02_01460 PF00248 Aldo/keto reductase family RI02_01465 PF14501 GHKL domain RI02_01470 PF04397 LytTr DNA-binding domain RI02_01470 PF00072 Response regulator receiver domain RI02_01475 PF00005 ABC transporter RI02_01480 PF12679 ABC-2 family transporter protein RI02_01495 PF17118 Domain of unknown function (DUF5105) RI02_01495 PF11611 Domain of unknown function (DUF4352) RI02_01500 PF07486 Cell Wall Hydrolase RI02_01515 PF00296 Luciferase-like monooxygenase RI02_01520 PF02342 TerD domain RI02_01525 PF02342 TerD domain RI02_01530 PF02342 TerD domain RI02_01535 PF03741 Integral membrane protein TerC family RI02_01560 PF14266 Putative component of 'biosynthetic module' RI02_01565 PF05816 Toxic anion resistance protein (TelA) RI02_01570 PF00571 CBS domain RI02_01570 PF00005 ABC transporter RI02_01575 PF00528 Binding-protein-dependent transport system inner membrane component RI02_01580 PF04069 Substrate binding domain of ABC-type glycine betaine transport system RI02_01595 PF01546 Peptidase family M20/M25/M40 RI02_01595 PF07687 Peptidase dimerisation domain RI02_01600 PF03606 C4-dicarboxylate anaerobic carrier RI02_01605 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RI02_01605 PF00056 lactate/malate dehydrogenase, NAD binding domain RI02_01610 PF02652 L-lactate permease RI02_01615 PF00356 Bacterial regulatory proteins, lacI family RI02_01620 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RI02_01625 PF05116 Sucrose-6F-phosphate phosphohydrolase RI02_01630 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RI02_01630 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RI02_01635 PF07690 Major Facilitator Superfamily RI02_01640 PF01810 LysE type translocator RI02_01650 PF10852 Protein of unknown function (DUF2651) RI02_01655 PF08892 YqcI/YcgG family RI02_01660 PF00324 Amino acid permease RI02_01665 PF09347 Domain of unknown function (DUF1989) RI02_01670 PF02540 NAD synthase RI02_01680 PF00171 Aldehyde dehydrogenase family RI02_01685 PF01487 Type I 3-dehydroquinase RI02_01690 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RI02_01690 PF00205 Thiamine pyrophosphate enzyme, central domain RI02_01690 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RI02_01700 PF02515 CoA-transferase family III RI02_01705 PF07690 Major Facilitator Superfamily RI02_01715 PF01614 Bacterial transcriptional regulator RI02_01715 PF09339 IclR helix-turn-helix domain RI02_01720 PF01202 Shikimate kinase RI02_01725 PF08241 Methyltransferase domain RI02_01730 PF03466 LysR substrate binding domain RI02_01730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RI02_01735 PF00795 Carbon-nitrogen hydrolase RI02_01740 PF05448 Acetyl xylan esterase (AXE1) RI02_01750 PF10127 RNA repair pathway DNA polymerase beta family RI02_01755 PF01619 Proline dehydrogenase RI02_01760 PF00171 Aldehyde dehydrogenase family RI02_01765 PF17853 GGDEF-like domain RI02_01765 PF13556 PucR C-terminal helix-turn-helix domain RI02_01770 PF02040 Arsenical pump membrane protein RI02_01775 PF00528 Binding-protein-dependent transport system inner membrane component RI02_01780 PF00497 Bacterial extracellular solute-binding proteins, family 3 RI02_01785 PF10925 Protein of unknown function (DUF2680) RI02_01790 PF12706 Beta-lactamase superfamily domain RI02_01795 PF01037 Lrp/AsnC ligand binding domain RI02_01800 PF02522 Aminoglycoside 3-N-acetyltransferase RI02_01805 PF11033 Competence protein J (ComJ) RI02_01810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RI02_01810 PF17202 Single cache domain 3 RI02_01810 PF00672 HAMP domain RI02_01815 PF14040 Deoxyribonuclease NucA/NucB RI02_01825 PF01968 Hydantoinase/oxoprolinase RI02_01825 PF05378 Hydantoinase/oxoprolinase N-terminal region RI02_01840 PF00005 ABC transporter RI02_01840 PF08402 TOBE domain RI02_01845 PF00528 Binding-protein-dependent transport system inner membrane component RI02_01850 PF00528 Binding-protein-dependent transport system inner membrane component RI02_01855 PF00668 Condensation domain RI02_01855 PF13193 AMP-binding enzyme C-terminal domain RI02_01855 PF00501 AMP-binding enzyme RI02_01855 PF00550 Phosphopantetheine attachment site RI02_01860 PF00550 Phosphopantetheine attachment site RI02_01860 PF00668 Condensation domain RI02_01860 PF13193 AMP-binding enzyme C-terminal domain RI02_01860 PF00501 AMP-binding enzyme RI02_01865 PF00975 Thioesterase domain RI02_01865 PF00550 Phosphopantetheine attachment site RI02_01865 PF00668 Condensation domain RI02_01865 PF13193 AMP-binding enzyme C-terminal domain RI02_01865 PF00501 AMP-binding enzyme RI02_01870 PF00668 Condensation domain RI02_01870 PF00501 AMP-binding enzyme RI02_01870 PF13193 AMP-binding enzyme C-terminal domain RI02_01870 PF00550 Phosphopantetheine attachment site RI02_01875 PF00668 Condensation domain RI02_01875 PF13193 AMP-binding enzyme C-terminal domain RI02_01875 PF00550 Phosphopantetheine attachment site RI02_01875 PF00501 AMP-binding enzyme RI02_01880 PF00975 Thioesterase domain RI02_01885 PF00892 EamA-like transporter family RI02_01890 PF00392 Bacterial regulatory proteins, gntR family RI02_01890 PF00155 Aminotransferase class I and II RI02_01895 PF01648 4'-phosphopantetheinyl transferase superfamily RI02_01900 PF12833 Helix-turn-helix domain RI02_01900 PF06445 GyrI-like small molecule binding domain RI02_01915 PF00005 ABC transporter RI02_01920 PF00528 Binding-protein-dependent transport system inner membrane component RI02_01925 PF00497 Bacterial extracellular solute-binding proteins, family 3 RI02_01930 PF01738 Dienelactone hydrolase family RI02_01935 PF00324 Amino acid permease RI02_01940 PF00854 POT family RI02_01945 PF13229 Right handed beta helix region RI02_01945 PF12708 Pectate lyase superfamily protein RI02_01950 PF00296 Luciferase-like monooxygenase RI02_01955 PF00583 Acetyltransferase (GNAT) family RI02_01960 PF00497 Bacterial extracellular solute-binding proteins, family 3 RI02_01965 PF00528 Binding-protein-dependent transport system inner membrane component RI02_01970 PF00005 ABC transporter RI02_01975 PF01546 Peptidase family M20/M25/M40 RI02_01975 PF07687 Peptidase dimerisation domain RI02_01980 PF03972 MmgE/PrpD family RI02_01990 PF00486 Transcriptional regulatory protein, C terminal RI02_01990 PF00072 Response regulator receiver domain RI02_01995 PF00512 His Kinase A (phospho-acceptor) domain RI02_01995 PF00672 HAMP domain RI02_01995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RI02_02000 PF01740 STAS domain RI02_02000 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain RI02_02005 PF00696 Amino acid kinase family RI02_02005 PF13840 ACT domain RI02_02010 PF07690 Major Facilitator Superfamily RI02_02015 PF00440 Bacterial regulatory proteins, tetR family RI02_02025 PF01022 Bacterial regulatory protein, arsR family RI02_02035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RI02_02035 PF03466 LysR substrate binding domain RI02_02040 PF00392 Bacterial regulatory proteins, gntR family RI02_02040 PF00155 Aminotransferase class I and II RI02_02045 PF00202 Aminotransferase class-III RI02_02050 PF13520 Amino acid permease RI02_02055 PF00171 Aldehyde dehydrogenase family RI02_02060 PF02525 Flavodoxin-like fold RI02_02065 PF07987 Domain of unkown function (DUF1775) RI02_02070 PF04234 CopC domain RI02_02070 PF13115 YtkA-like RI02_02070 PF05425 Copper resistance protein D RI02_02075 PF02378 Phosphotransferase system, EIIC RI02_02075 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RI02_02080 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RI02_02085 PF01232 Mannitol dehydrogenase Rossmann domain RI02_02085 PF08125 Mannitol dehydrogenase C-terminal domain RI02_02090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RI02_02090 PF00672 HAMP domain RI02_02090 PF02743 Cache domain RI02_02125 PF12681 Glyoxalase-like domain RI02_02130 PF05901 Excalibur calcium-binding domain RI02_02140 PF03746 LamB/YcsF family RI02_02145 PF01566 Natural resistance-associated macrophage protein RI02_02150 PF07286 Protein of unknown function (DUF1445) RI02_02155 PF02682 Carboxyltransferase domain, subdomain C and D RI02_02160 PF02626 Carboxyltransferase domain, subdomain A and B RI02_02165 PF01614 Bacterial transcriptional regulator RI02_02165 PF09339 IclR helix-turn-helix domain RI02_02170 PF02525 Flavodoxin-like fold RI02_02175 PF13472 GDSL-like Lipase/Acylhydrolase family RI02_02185 PF05043 Mga helix-turn-helix domain RI02_02185 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RI02_02185 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RI02_02185 PF08279 HTH domain RI02_02185 PF00874 PRD domain RI02_02190 PF13649 Methyltransferase domain RI02_02200 PF16242 Pyridoxamine 5'-phosphate oxidase like RI02_02220 PF12823 Domain of unknown function (DUF3817) RI02_02225 PF00392 Bacterial regulatory proteins, gntR family RI02_02225 PF07729 FCD domain RI02_02230 PF12833 Helix-turn-helix domain RI02_02230 PF02311 AraC-like ligand binding domain RI02_02235 PF00892 EamA-like transporter family RI02_02240 PF00180 Isocitrate/isopropylmalate dehydrogenase RI02_02245 PF01131 DNA topoisomerase RI02_02245 PF01751 Toprim domain RI02_02255 PF00990 Diguanylate cyclase, GGDEF domain RI02_02260 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) RI02_02270 PF03170 Bacterial cellulose synthase subunit RI02_02275 PF13520 Amino acid permease RI02_02280 PF00205 Thiamine pyrophosphate enzyme, central domain RI02_02280 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RI02_02280 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RI02_02285 PF14410 HNH/ENDO VII superfamily nuclease with conserved GHE residues RI02_02285 PF14449 Pre-toxin TG RI02_02285 PF04740 LXG domain of WXG superfamily RI02_02315 PF13302 Acetyltransferase (GNAT) domain RI02_02320 PF01566 Natural resistance-associated macrophage protein RI02_02325 PF04226 Transglycosylase associated protein RI02_02330 PF12787 EcsC protein family RI02_02335 PF03480 Bacterial extracellular solute-binding protein, family 7 RI02_02340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RI02_02340 PF17203 Single cache domain 3 RI02_02340 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain RI02_02345 PF08279 HTH domain RI02_02345 PF00072 Response regulator receiver domain RI02_02350 PF00375 Sodium:dicarboxylate symporter family RI02_02355 PF01594 AI-2E family transporter RI02_02360 PF00375 Sodium:dicarboxylate symporter family RI02_02365 PF00005 ABC transporter RI02_02380 PF13040 Fur-regulated basic protein B RI02_02385 PF00085 Thioredoxin RI02_02390 PF07478 D-ala D-ala ligase C-terminus RI02_02390 PF01820 D-ala D-ala ligase N-terminus RI02_02395 PF01225 Mur ligase family, catalytic domain RI02_02395 PF08245 Mur ligase middle domain RI02_02395 PF02875 Mur ligase family, glutamate ligase domain RI02_02400 PF12146 Serine aminopeptidase, S33 RI02_02410 PF00270 DEAD/DEAH box helicase RI02_02410 PF00271 Helicase conserved C-terminal domain RI02_02415 PF03703 Bacterial PH domain RI02_02420 PF03703 Bacterial PH domain RI02_02425 PF01694 Rhomboid family RI02_02430 PF01648 4'-phosphopantetheinyl transferase superfamily RI02_02440 PF00842 Alanine racemase, C-terminal domain RI02_02440 PF01168 Alanine racemase, N-terminal domain RI02_02445 PF01402 Ribbon-helix-helix protein, copG family RI02_02450 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system RI02_02455 PF08678 Rsbr N terminal RI02_02455 PF01740 STAS domain RI02_02460 PF01740 STAS domain RI02_02465 PF13581 Histidine kinase-like ATPase domain RI02_02470 PF07228 Stage II sporulation protein E (SpoIIE) RI02_02470 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain RI02_02475 PF01740 STAS domain RI02_02480 PF13581 Histidine kinase-like ATPase domain RI02_02485 PF04539 Sigma-70 region 3 RI02_02485 PF04545 Sigma-70, region 4 RI02_02485 PF04542 Sigma-70 region 2 RI02_02490 PF07228 Stage II sporulation protein E (SpoIIE) RI02_02495 PF16921 Tex protein YqgF-like domain RI02_02495 PF00575 S1 RNA binding domain RI02_02495 PF09371 Tex-like protein N-terminal domain RI02_02495 PF17674 HHH domain RI02_02505 PF10263 SprT-like family RI02_02505 PF17283 SprT-like zinc ribbon domain RI02_02510 PF00676 Dehydrogenase E1 component RI02_02515 PF02780 Transketolase, C-terminal domain RI02_02515 PF02779 Transketolase, pyrimidine binding domain RI02_02520 PF02817 e3 binding domain RI02_02520 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RI02_02520 PF00364 Biotin-requiring enzyme RI02_02525 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RI02_02525 PF07992 Pyridine nucleotide-disulphide oxidoreductase RI02_02530 PF01590 GAF domain RI02_02530 PF00158 Sigma-54 interaction domain RI02_02530 PF02954 Bacterial regulatory protein, Fis family RI02_02575 PF00313 'Cold-shock' DNA-binding domain RI02_02580 PF02378 Phosphotransferase system, EIIC RI02_02580 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RI02_02580 PF00367 phosphotransferase system, EIIB RI02_02585 PF04794 YdjC-like protein RI02_02590 PF03123 CAT RNA binding domain RI02_02590 PF00874 PRD domain RI02_02595 PF08240 Alcohol dehydrogenase GroES-like domain RI02_02595 PF00107 Zinc-binding dehydrogenase RI02_02600 PF13411 MerR HTH family regulatory protein RI02_02605 PF00722 Glycosyl hydrolases family 16 RI02_02615 PF00440 Bacterial regulatory proteins, tetR family RI02_02620 PF07690 Major Facilitator Superfamily RI02_02625 PF07859 alpha/beta hydrolase fold RI02_02635 PF00106 short chain dehydrogenase RI02_02645 PF00710 Asparaginase, N-terminal RI02_02645 PF17763 Glutaminase/Asparaginase C-terminal domain RI02_02650 PF12697 Alpha/beta hydrolase family RI02_02660 PF00440 Bacterial regulatory proteins, tetR family RI02_02660 PF16925 Tetracyclin repressor-like, C-terminal domain RI02_02665 PF07690 Major Facilitator Superfamily RI02_02670 PF01757 Acyltransferase family RI02_02675 PF03176 MMPL family RI02_02680 PF07730 Histidine kinase RI02_02680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RI02_02685 PF00072 Response regulator receiver domain RI02_02685 PF00196 Bacterial regulatory proteins, luxR family RI02_02715 PF00583 Acetyltransferase (GNAT) family RI02_02720 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RI02_02730 PF00440 Bacterial regulatory proteins, tetR family RI02_02735 PF01872 RibD C-terminal domain RI02_02740 PF01047 MarR family RI02_02745 PF00881 Nitroreductase family RI02_02760 PF07883 Cupin domain RI02_02760 PF01381 Helix-turn-helix RI02_02765 PF01810 LysE type translocator RI02_02770 PF00583 Acetyltransferase (GNAT) family RI02_02785 PF01596 O-methyltransferase RI02_02795 PF03591 AzlC protein RI02_02800 PF00892 EamA-like transporter family RI02_02810 PF00375 Sodium:dicarboxylate symporter family RI02_02850 PF02769 AIR synthase related protein, C-terminal domain RI02_02850 PF00586 AIR synthase related protein, N-terminal domain RI02_02855 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE RI02_02860 PF00814 Glycoprotease family RI02_02865 PF00583 Acetyltransferase (GNAT) family RI02_02870 PF00814 Glycoprotease family RI02_02875 PF12848 ABC transporter RI02_02875 PF16326 ABC transporter C-terminal domain RI02_02875 PF00005 ABC transporter RI02_02880 PF01967 MoaC family RI02_02885 PF06971 Putative DNA-binding protein N-terminus RI02_02885 PF02629 CoA binding domain RI02_02890 PF02416 mttA/Hcf106 family RI02_02895 PF00902 Sec-independent protein translocase protein (TatC) RI02_02905 PF14146 Domain of unknown function (DUF4305) RI02_02910 PF02517 CPBP intramembrane metalloprotease RI02_02915 PF00166 Chaperonin 10 Kd subunit RI02_02920 PF00118 TCP-1/cpn60 chaperonin family RI02_02925 PF01047 MarR family RI02_02930 PF00583 Acetyltransferase (GNAT) family RI02_02935 PF04299 Putative FMN-binding domain RI02_02940 PF02557 D-alanyl-D-alanine carboxypeptidase RI02_02965 PF03330 Lytic transglycolase RI02_02970 PF07676 WD40-like Beta Propeller Repeat RI02_02980 PF07732 Multicopper oxidase RI02_02980 PF00394 Multicopper oxidase RI02_02980 PF07731 Multicopper oxidase RI02_02985 PF00324 Amino acid permease RI02_02990 PF01545 Cation efflux family RI02_02990 PF16916 Dimerisation domain of Zinc Transporter RI02_02995 PF17863 AAA lid domain RI02_02995 PF07726 ATPase family associated with various cellular activities (AAA) RI02_03000 PF01882 Protein of unknown function DUF58 RI02_03005 PF11992 Domain of unknown function (DUF3488) RI02_03005 PF13559 Domain of unknown function (DUF4129) RI02_03005 PF01841 Transglutaminase-like superfamily RI02_03010 PF00117 Glutamine amidotransferase class-I RI02_03010 PF00958 GMP synthase C terminal domain RI02_03010 PF02540 NAD synthase RI02_03035 PF04073 Aminoacyl-tRNA editing domain RI02_03040 PF12833 Helix-turn-helix domain RI02_03045 PF00682 HMGL-like RI02_03045 PF08502 LeuA allosteric (dimerisation) domain RI02_03055 PF12833 Helix-turn-helix domain RI02_03080 PF00072 Response regulator receiver domain RI02_03080 PF04397 LytTr DNA-binding domain RI02_03085 PF13302 Acetyltransferase (GNAT) domain RI02_03100 PF04542 Sigma-70 region 2 RI02_03100 PF08281 Sigma-70, region 4 RI02_03110 PF07690 Major Facilitator Superfamily RI02_03115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RI02_03115 PF03466 LysR substrate binding domain RI02_03120 PF00860 Permease family RI02_03125 PF10055 Uncharacterized small protein (DUF2292) RI02_03135 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) RI02_03140 PF14044 NETI protein RI02_03145 PF00731 AIR carboxylase RI02_03150 PF02222 ATP-grasp domain RI02_03150 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain RI02_03155 PF00206 Lyase RI02_03155 PF10397 Adenylosuccinate lyase C-terminus RI02_03160 PF01259 SAICAR synthetase RI02_03165 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase RI02_03175 PF00586 AIR synthase related protein, N-terminal domain RI02_03175 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain RI02_03175 PF02769 AIR synthase related protein, C-terminal domain RI02_03180 PF00156 Phosphoribosyl transferase domain RI02_03185 PF02769 AIR synthase related protein, C-terminal domain RI02_03185 PF00586 AIR synthase related protein, N-terminal domain RI02_03190 PF00551 Formyl transferase RI02_03195 PF01808 AICARFT/IMPCHase bienzyme RI02_03195 PF02142 MGS-like domain RI02_03200 PF02843 Phosphoribosylglycinamide synthetase, C domain RI02_03200 PF02844 Phosphoribosylglycinamide synthetase, N domain RI02_03200 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RI02_03220 PF00202 Aminotransferase class-III RI02_03225 PF01144 Coenzyme A transferase RI02_03230 PF01144 Coenzyme A transferase RI02_03235 PF01546 Peptidase family M20/M25/M40 RI02_03235 PF07687 Peptidase dimerisation domain RI02_03240 PF11127 Protein of unknown function (DUF2892) RI02_03245 PF01979 Amidohydrolase family RI02_03245 PF13382 Adenine deaminase C-terminal domain RI02_03250 PF01371 Trp repressor protein RI02_03260 PF01645 Conserved region in glutamate synthase RI02_03275 PF01884 PcrB family RI02_03280 PF13361 UvrD-like helicase C-terminal domain RI02_03280 PF00580 UvrD/REP helicase N-terminal domain RI02_03285 PF03119 NAD-dependent DNA ligase C4 zinc finger domain RI02_03285 PF12826 Helix-hairpin-helix motif RI02_03285 PF01653 NAD-dependent DNA ligase adenylation domain RI02_03285 PF00533 BRCA1 C Terminus (BRCT) domain RI02_03285 PF03120 NAD-dependent DNA ligase OB-fold domain RI02_03290 PF07537 CamS sex pheromone cAM373 precursor RI02_03295 PF01636 Phosphotransferase enzyme family RI02_03300 PF02308 MgtC family RI02_03305 PF00474 Sodium:solute symporter family RI02_03310 PF02686 Glu-tRNAGln amidotransferase C subunit RI02_03315 PF01425 Amidase RI02_03320 PF02934 GatB/GatE catalytic domain RI02_03320 PF02637 GatB domain RI02_03325 PF00440 Bacterial regulatory proteins, tetR family RI02_03330 PF00873 AcrB/AcrD/AcrF family RI02_03335 PF01156 Inosine-uridine preferring nucleoside hydrolase RI02_03340 PF00781 Diacylglycerol kinase catalytic domain RI02_03345 PF05958 tRNA (Uracil-5-)-methyltransferase RI02_03345 PF01938 TRAM domain RI02_03365 PF00145 C-5 cytosine-specific DNA methylase RI02_03370 PF01207 Dihydrouridine synthase (Dus) RI02_03385 PF02082 Transcriptional regulator RI02_03390 PF07992 Pyridine nucleotide-disulphide oxidoreductase RI02_03400 PF13021 Domain of unknown function (DUF3885) RI02_03405 PF02056 Family 4 glycosyl hydrolase RI02_03405 PF11975 Family 4 glycosyl hydrolase C-terminal domain RI02_03410 PF01418 Helix-turn-helix domain, rpiR family RI02_03410 PF01380 SIS domain RI02_03415 PF07690 Major Facilitator Superfamily RI02_03425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RI02_03425 PF03466 LysR substrate binding domain RI02_03435 PF13037 Domain of unknown function (DUF3898) RI02_03435 PF13039 Protein of unknown function (DUF3900) RI02_03445 PF00483 Nucleotidyl transferase RI02_03450 PF16363 GDP-mannose 4,6 dehydratase RI02_03455 PF03407 Nucleotide-diphospho-sugar transferase RI02_03460 PF00535 Glycosyl transferase family 2 RI02_03465 PF03407 Nucleotide-diphospho-sugar transferase RI02_03470 PF07690 Major Facilitator Superfamily RI02_03475 PF00905 Penicillin binding protein transpeptidase domain RI02_03475 PF03717 Penicillin-binding Protein dimerisation domain RI02_03475 PF05223 NTF2-like N-terminal transpeptidase domain RI02_03480 PF00939 Sodium:sulfate symporter transmembrane region RI02_03495 PF00011 Hsp20/alpha crystallin family RI02_03510 PF13520 Amino acid permease RI02_03515 PF13181 Tetratricopeptide repeat RI02_03515 PF00535 Glycosyl transferase family 2 RI02_03520 PF00005 ABC transporter RI02_03520 PF16326 ABC transporter C-terminal domain RI02_03520 PF12848 ABC transporter RI02_03525 PF02649 Type I GTP cyclohydrolase folE2 RI02_03530 PF13411 MerR HTH family regulatory protein RI02_03535 PF07690 Major Facilitator Superfamily RI02_03540 PF00005 ABC transporter RI02_03540 PF12848 ABC transporter RI02_03545 PF00270 DEAD/DEAH box helicase RI02_03545 PF00271 Helicase conserved C-terminal domain RI02_03550 PF16884 N-terminal domain of oxidoreductase RI02_03550 PF00107 Zinc-binding dehydrogenase RI02_03555 PF11486 Protein of unknown function (DUF3212) RI02_03560 PF11181 Heat induced stress protein YflT RI02_03570 PF00925 GTP cyclohydrolase II RI02_03570 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RI02_03575 PF03781 Sulfatase-modifying factor enzyme 1 RI02_03585 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RI02_03585 PF01872 RibD C-terminal domain RI02_03595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RI02_03595 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain RI02_03600 PF00072 Response regulator receiver domain RI02_03600 PF08279 HTH domain RI02_03600 PF12431 Transcriptional regulator RI02_03605 PF03401 Tripartite tricarboxylate transporter family receptor RI02_03610 PF03600 Citrate transporter RI02_03620 PF05870 Phenolic acid decarboxylase (PAD) RI02_03625 PF10400 Virulence activator alpha C-term RI02_03625 PF03551 Transcriptional regulator PadR-like family RI02_03630 PF02898 Nitric oxide synthase, oxygenase domain RI02_03640 PF00708 Acylphosphatase RI02_03645 PF03475 3-alpha domain RI02_03645 PF03473 MOSC domain RI02_03650 PF11121 Protein of unknown function (DUF2639) RI02_03660 PF00557 Metallopeptidase family M24 RI02_03665 PF02378 Phosphotransferase system, EIIC RI02_03665 PF00367 phosphotransferase system, EIIB RI02_03670 PF05675 Protein of unknown function (DUF817) RI02_03680 PF14172 Domain of unknown function (DUF4309) RI02_03685 PF00884 Sulfatase RI02_03690 PF00282 Pyridoxal-dependent decarboxylase conserved domain RI02_03695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RI02_03695 PF00672 HAMP domain RI02_03700 PF09350 Domain of unknown function (DUF1992) RI02_03705 PF02378 Phosphotransferase system, EIIC RI02_03705 PF00367 phosphotransferase system, EIIB RI02_03710 PF00128 Alpha amylase, catalytic domain RI02_03710 PF16657 Maltogenic Amylase, C-terminal domain RI02_03715 PF00392 Bacterial regulatory proteins, gntR family RI02_03715 PF07702 UTRA domain RI02_03725 PF02872 5'-nucleotidase, C-terminal domain RI02_03725 PF00149 Calcineurin-like phosphoesterase RI02_03730 PF01965 DJ-1/PfpI family RI02_03735 PF06569 Protein of unknown function (DUF1128) RI02_03740 PF01235 Sodium:alanine symporter family RI02_03750 PF01451 Low molecular weight phosphotyrosine protein phosphatase RI02_03760 PF03631 Virulence factor BrkB RI02_03765 PF13302 Acetyltransferase (GNAT) domain RI02_03770 PF07690 Major Facilitator Superfamily RI02_03780 PF01699 Sodium/calcium exchanger protein RI02_03785 PF14167 YfkD-like protein RI02_03795 PF01709 Transcriptional regulator RI02_03805 PF00924 Mechanosensitive ion channel RI02_03810 PF04055 Radical SAM superfamily RI02_03810 PF08756 YfkB-like domain RI02_03820 PF01522 Polysaccharide deacetylase RI02_03825 PF10898 Protein of unknown function (DUF2716) RI02_03830 PF01544 CorA-like Mg2+ transporter protein RI02_03840 PF00730 HhH-GPD superfamily base excision DNA repair protein RI02_03845 PF01938 TRAM domain RI02_03845 PF05958 tRNA (Uracil-5-)-methyltransferase RI02_03865 PF13411 MerR HTH family regulatory protein RI02_03865 PF07739 TipAS antibiotic-recognition domain RI02_03870 PF07690 Major Facilitator Superfamily RI02_03925 PF00893 Small Multidrug Resistance protein RI02_03930 PF00893 Small Multidrug Resistance protein RI02_03935 PF17934 Tetracyclin repressor-like, C-terminal domain RI02_03935 PF00440 Bacterial regulatory proteins, tetR family RI02_03950 PF00657 GDSL-like Lipase/Acylhydrolase RI02_03955 PF07992 Pyridine nucleotide-disulphide oxidoreductase RI02_03960 PF12833 Helix-turn-helix domain RI02_03960 PF02805 Metal binding domain of Ada RI02_03965 PF01497 Periplasmic binding protein RI02_03970 PF00664 ABC transporter transmembrane region RI02_03970 PF00005 ABC transporter RI02_03975 PF02694 Uncharacterised BCR, YnfA/UPF0060 family RI02_03980 PF04542 Sigma-70 region 2 RI02_03980 PF04545 Sigma-70, region 4 RI02_03995 PF00107 Zinc-binding dehydrogenase RI02_03995 PF08240 Alcohol dehydrogenase GroES-like domain RI02_04000 PF12867 DinB superfamily RI02_04010 PF01047 MarR family RI02_04015 PF09924 Uncharacterised conserved protein (DUF2156) RI02_04015 PF03706 Lysylphosphatidylglycerol synthase TM region RI02_04030 PF18801 response regulator aspartate phosphatase H, N terminal RI02_04035 PF00881 Nitroreductase family RI02_04050 PF08338 Domain of unknown function (DUF1731) RI02_04050 PF01370 NAD dependent epimerase/dehydratase family RI02_04055 PF02631 RecX family RI02_04060 PF08838 Protein of unknown function (DUF1811) RI02_04070 PF08176 Small acid-soluble spore protein K family RI02_04075 PF14043 WVELL protein RI02_04080 PF00535 Glycosyl transferase family 2 RI02_04085 PF09586 Bacterial membrane protein YfhO RI02_04090 PF01494 FAD binding domain RI02_04105 PF00190 Cupin RI02_04110 PF12841 YvrJ protein family RI02_04115 PF04545 Sigma-70, region 4 RI02_04125 PF04307 LexA-binding, inner membrane-associated putative hydrolase RI02_04130 PF00730 HhH-GPD superfamily base excision DNA repair protein RI02_04130 PF14815 NUDIX domain RI02_04145 PF04259 Small, acid-soluble spore protein, gamma-type RI02_04155 PF04167 Protein of unknown function (DUF402) RI02_04160 PF00005 ABC transporter RI02_04160 PF00664 ABC transporter transmembrane region RI02_04165 PF00005 ABC transporter RI02_04165 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RI02_04170 PF00005 ABC transporter RI02_04170 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RI02_04175 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RI02_04180 PF00528 Binding-protein-dependent transport system inner membrane component RI02_04185 PF00528 Binding-protein-dependent transport system inner membrane component RI02_04185 PF12911 N-terminal TM domain of oligopeptide transport permease C RI02_04190 PF06081 Aromatic acid exporter family member 1 RI02_04195 PF00202 Aminotransferase class-III RI02_04200 PF00578 AhpC/TSA family RI02_04205 PF01475 Ferric uptake regulator family RI02_04210 PF11023 Zinc-ribbon containing domain RI02_04215 PF18576 Helix-turn-helix domain RI02_04215 PF14540 Nucleotidyltransferase-like RI02_04350 PF00884 Sulfatase RI02_04355 PF10502 Signal peptidase, peptidase S26 RI02_04360 PF01053 Cys/Met metabolism PLP-dependent enzyme RI02_04370 PF00005 ABC transporter RI02_04375 PF09084 NMT1/THI5 like RI02_04380 PF00528 Binding-protein-dependent transport system inner membrane component RI02_04385 PF00296 Luciferase-like monooxygenase RI02_04395 PF00005 ABC transporter RI02_04430 PF08331 Domain of unknown function (DUF1730) RI02_04435 PF12671 Putative amidase domain RI02_04440 PF00588 SpoU rRNA Methylase family RI02_04445 PF06798 PrkA serine protein kinase C-terminal domain RI02_04445 PF08298 PrkA AAA domain RI02_04450 PF04285 Protein of unknown function (DUF444) RI02_04460 PF07690 Major Facilitator Superfamily RI02_04465 PF03358 NADPH-dependent FMN reductase RI02_04475 PF00313 'Cold-shock' DNA-binding domain RI02_04485 PF00990 Diguanylate cyclase, GGDEF domain RI02_04485 PF07694 5TMR of 5TMR-LYT RI02_04500 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) RI02_04510 PF07875 Coat F domain RI02_04515 PF00512 His Kinase A (phospho-acceptor) domain RI02_04515 PF00989 PAS fold RI02_04515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RI02_04515 PF13188 PAS domain RI02_04515 PF13426 PAS domain RI02_04520 PF02872 5'-nucleotidase, C-terminal domain RI02_04520 PF00746 LPXTG cell wall anchor motif RI02_04520 PF00149 Calcineurin-like phosphoesterase RI02_04520 PF00565 Staphylococcal nuclease homologue RI02_04525 PF04203 Sortase domain RI02_04530 PF01479 S4 domain RI02_04530 PF00849 RNA pseudouridylate synthase RI02_04540 PF13419 Haloacid dehalogenase-like hydrolase RI02_04545 PF00795 Carbon-nitrogen hydrolase RI02_04545 PF00583 Acetyltransferase (GNAT) family RI02_04565 PF05651 Putative sugar diacid recognition RI02_04565 PF17853 GGDEF-like domain RI02_04565 PF13556 PucR C-terminal helix-turn-helix domain RI02_04570 PF00202 Aminotransferase class-III RI02_04575 PF04309 Glycerol-3-phosphate responsive antiterminator RI02_04580 PF00230 Major intrinsic protein RI02_04585 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RI02_04585 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RI02_04590 PF16901 C-terminal domain of alpha-glycerophosphate oxidase RI02_04590 PF01266 FAD dependent oxidoreductase RI02_04595 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RI02_04595 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RI02_04595 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RI02_04595 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RI02_04600 PF07730 Histidine kinase RI02_04600 PF13185 GAF domain RI02_04605 PF00072 Response regulator receiver domain RI02_04605 PF00196 Bacterial regulatory proteins, luxR family RI02_04610 PF14148 YhdB-like protein RI02_04615 PF13028 Protein of unknown function (DUF3889) RI02_04620 PF00199 Catalase RI02_04620 PF06628 Catalase-related immune-responsive RI02_04625 PF02082 Transcriptional regulator RI02_04630 PF00175 Oxidoreductase NAD-binding domain RI02_04630 PF00042 Globin RI02_04630 PF00970 Oxidoreductase FAD-binding domain RI02_04635 PF04293 SpoVR like protein RI02_04640 PF00245 Alkaline phosphatase RI02_04645 PF01476 LysM domain RI02_04645 PF00877 NlpC/P60 family RI02_04650 PF13520 Amino acid permease RI02_04655 PF17453 Sigma-M inhibitor RI02_04660 PF13800 Sigma factor regulator N-terminal RI02_04660 PF13791 Sigma factor regulator C-terminal RI02_04665 PF04542 Sigma-70 region 2 RI02_04665 PF08281 Sigma-70, region 4 RI02_04670 PF01553 Acyltransferase RI02_04675 PF01595 Cyclin M transmembrane N-terminal domain RI02_04675 PF00571 CBS domain RI02_04675 PF03471 Transporter associated domain RI02_04680 PF13411 MerR HTH family regulatory protein RI02_04685 PF03471 Transporter associated domain RI02_04685 PF00571 CBS domain RI02_04685 PF01595 Cyclin M transmembrane N-terminal domain RI02_04695 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RI02_04700 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RI02_04705 PF03009 Glycerophosphoryl diester phosphodiesterase family RI02_04710 PF17444 Uncharacterized YhdX-like RI02_04715 PF00924 Mechanosensitive ion channel RI02_04720 PF02146 Sir2 family RI02_04725 PF01522 Polysaccharide deacetylase RI02_04730 PF01063 Amino-transferase class IV RI02_04740 PF00582 Universal stress protein family RI02_04745 PF00664 ABC transporter transmembrane region RI02_04745 PF00005 ABC transporter RI02_04750 PF00005 ABC transporter RI02_04750 PF00664 ABC transporter transmembrane region RI02_04755 PF13460 NAD(P)H-binding RI02_04760 PF00269 Small, acid-soluble spore proteins, alpha/beta type RI02_04765 PF03459 TOBE domain RI02_04765 PF17912 MalK OB fold domain RI02_04765 PF00005 ABC transporter RI02_04770 PF13556 PucR C-terminal helix-turn-helix domain RI02_04775 PF17277 Family of unknown function (DUF5342) RI02_04780 PF14398 YheC/D like ATP-grasp RI02_04785 PF14398 YheC/D like ATP-grasp RI02_04790 PF04286 Protein of unknown function (DUF445) RI02_04795 PF06133 Control of competence regulator ComK, YlbF/YmcA RI02_04805 PF04055 Radical SAM superfamily RI02_04810 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) RI02_04815 PF00999 Sodium/hydrogen exchanger family RI02_04820 PF02080 TrkA-C domain RI02_04830 PF00378 Enoyl-CoA hydratase/isomerase RI02_04835 PF14120 YhzD-like protein RI02_04840 PF00149 Calcineurin-like phosphoesterase RI02_04845 PF13514 AAA domain RI02_04850 PF01966 HD domain RI02_04855 PF14147 Sporulation protein YhaL RI02_04865 PF09680 Family of unknown function RI02_04870 PF09680 Family of unknown function RI02_04880 PF11667 Putative zincin peptidase RI02_04885 PF08963 Protein of unknown function (DUF1878) RI02_04890 PF01047 MarR family RI02_04895 PF12732 YtxH-like protein RI02_04905 PF17099 Tryptophan transporter TrpP RI02_04910 PF00266 Aminotransferase class-V RI02_04915 PF01230 HIT domain RI02_04920 PF00005 ABC transporter RI02_04925 PF05975 Bacterial ABC transporter protein EcsB RI02_04930 PF12787 EcsC protein family RI02_04935 PF07687 Peptidase dimerisation domain RI02_04935 PF01546 Peptidase family M20/M25/M40 RI02_04950 PF03992 Antibiotic biosynthesis monooxygenase RI02_04955 PF00912 Transglycosylase RI02_04955 PF00905 Penicillin binding protein transpeptidase domain RI02_04960 PF01208 Uroporphyrinogen decarboxylase (URO-D) RI02_04965 PF00762 Ferrochelatase RI02_04970 PF01593 Flavin containing amine oxidoreductase RI02_04975 PF17932 Tetracyclin repressor-like, C-terminal domain RI02_04975 PF00440 Bacterial regulatory proteins, tetR family RI02_04985 PF05343 M42 glutamyl aminopeptidase RI02_04990 PF00375 Sodium:dicarboxylate symporter family RI02_04995 PF14149 YhfH-like protein RI02_05000 PF12706 Beta-lactamase superfamily domain RI02_05005 PF03099 Biotin/lipoate A/B protein ligase family RI02_05005 PF10437 Bacterial lipoate protein ligase C-terminus RI02_05010 PF00501 AMP-binding enzyme RI02_05010 PF13193 AMP-binding enzyme C-terminal domain RI02_05020 PF16491 CAAX prenyl protease N-terminal, five membrane helices RI02_05020 PF01435 Peptidase family M48 RI02_05025 PF05922 Peptidase inhibitor I9 RI02_05025 PF00082 Subtilase family RI02_05030 PF00300 Histidine phosphatase superfamily (branch 1) RI02_05035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RI02_05040 PF01266 FAD dependent oxidoreductase RI02_05040 PF00355 Rieske [2Fe-2S] domain RI02_05050 PF08858 IDEAL domain RI02_05055 PF06338 ComK protein RI02_05060 PF14031 Putative serine dehydratase domain RI02_05060 PF01168 Alanine racemase, N-terminal domain RI02_05070 PF00155 Aminotransferase class I and II RI02_05070 PF00392 Bacterial regulatory proteins, gntR family RI02_05075 PF07690 Major Facilitator Superfamily RI02_05080 PF01337 Barstar (barnase inhibitor) RI02_05085 PF01032 FecCD transport family RI02_05090 PF01032 FecCD transport family RI02_05095 PF00005 ABC transporter RI02_05100 PF01497 Periplasmic binding protein RI02_05105 PF03816 Cell envelope-related transcriptional attenuator domain RI02_05125 PF09335 SNARE associated Golgi protein RI02_05130 PF10502 Signal peptidase, peptidase S26 RI02_05140 PF05145 Transition state regulatory protein AbrB RI02_05155 PF07681 DoxX RI02_05160 PF02915 Rubrerythrin RI02_05165 PF12705 PD-(D/E)XK nuclease superfamily RI02_05170 PF13361 UvrD-like helicase C-terminal domain RI02_05170 PF00580 UvrD/REP helicase N-terminal domain RI02_05170 PF12705 PD-(D/E)XK nuclease superfamily RI02_05175 PF00149 Calcineurin-like phosphoesterase RI02_05175 PF12320 Type 5 capsule protein repressor C-terminal domain RI02_05180 PF13476 AAA domain RI02_05190 PF10676 Spore germination protein gerPA/gerPF RI02_05195 PF10970 Spore germination protein GerPE RI02_05205 PF10737 Spore germination protein GerPC RI02_05210 PF10803 Spore germination GerPB RI02_05215 PF10676 Spore germination protein gerPA/gerPF RI02_05225 PF08757 CotH kinase protein RI02_05240 PF01557 Fumarylacetoacetate (FAA) hydrolase family RI02_05245 PF07457 Protein of unknown function (DUF1516) RI02_05250 PF10949 Protein of unknown function (DUF2777) RI02_05255 PF00733 Asparagine synthase RI02_05255 PF13537 Glutamine amidotransferase domain RI02_05260 PF01593 Flavin containing amine oxidoreductase RI02_05265 PF01593 Flavin containing amine oxidoreductase RI02_05275 PF01554 MatE RI02_05280 PF12833 Helix-turn-helix domain RI02_05280 PF02311 AraC-like ligand binding domain RI02_05300 PF00202 Aminotransferase class-III RI02_05305 PF00282 Pyridoxal-dependent decarboxylase conserved domain RI02_05310 PF04183 IucA / IucC family RI02_05310 PF06276 Ferric iron reductase FhuF-like transporter RI02_05320 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) RI02_05325 PF06276 Ferric iron reductase FhuF-like transporter RI02_05325 PF04183 IucA / IucC family RI02_05340 PF02574 Homocysteine S-methyltransferase RI02_05340 PF00809 Pterin binding enzyme RI02_05340 PF02965 Vitamin B12 dependent methionine synthase, activation domain RI02_05340 PF02607 B12 binding domain RI02_05340 PF02310 B12 binding domain RI02_05345 PF02574 Homocysteine S-methyltransferase RI02_05345 PF02219 Methylenetetrahydrofolate reductase RI02_05350 PF04461 Protein of unknown function (DUF520) RI02_05355 PF17783 CvfB-like winged helix domain RI02_05355 PF13509 S1 domain RI02_05360 PF02608 ABC transporter substrate-binding protein PnrA-like RI02_05365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RI02_05365 PF00672 HAMP domain RI02_05365 PF02743 Cache domain RI02_05370 PF02645 Uncharacterised protein, DegV family COG1307 RI02_05375 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) RI02_05375 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 RI02_05380 PF12690 Intracellular proteinase inhibitor RI02_05385 PF12758 Protein of unknown function (DUF3813) RI02_05400 PF00326 Prolyl oligopeptidase family RI02_05405 PF01883 Iron-sulfur cluster assembly protein RI02_05410 PF01565 FAD binding domain RI02_05415 PF07690 Major Facilitator Superfamily RI02_05420 PF02774 Semialdehyde dehydrogenase, dimerisation domain RI02_05420 PF01118 Semialdehyde dehydrogenase, NAD binding domain RI02_05425 PF01960 ArgJ family RI02_05430 PF00696 Amino acid kinase family RI02_05435 PF00202 Aminotransferase class-III RI02_05440 PF00117 Glutamine amidotransferase class-I RI02_05440 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RI02_05445 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RI02_05445 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RI02_05450 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RI02_05450 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RI02_05455 PF14168 YjzC-like protein RI02_05460 PF07690 Major Facilitator Superfamily RI02_05465 PF11151 Protein of unknown function (DUF2929) RI02_05480 PF02608 ABC transporter substrate-binding protein PnrA-like RI02_05485 PF10815 ComZ RI02_05495 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RI02_05495 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RI02_05500 PF02801 Beta-ketoacyl synthase, C-terminal domain RI02_05500 PF00109 Beta-ketoacyl synthase, N-terminal domain RI02_05505 PF10026 Predicted Zn-dependent protease (DUF2268) RI02_05510 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RI02_05510 PF00005 ABC transporter RI02_05515 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RI02_05515 PF00005 ABC transporter RI02_05520 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RI02_05525 PF00528 Binding-protein-dependent transport system inner membrane component RI02_05530 PF00528 Binding-protein-dependent transport system inner membrane component RI02_05530 PF12911 N-terminal TM domain of oligopeptide transport permease C RI02_05535 PF12227 Protein of unknown function (DUF3603) RI02_05540 PF00579 tRNA synthetases class I (W and Y) RI02_05545 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RI02_05550 PF00528 Binding-protein-dependent transport system inner membrane component RI02_05555 PF00528 Binding-protein-dependent transport system inner membrane component RI02_05555 PF12911 N-terminal TM domain of oligopeptide transport permease C RI02_05560 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RI02_05560 PF00005 ABC transporter RI02_05565 PF00005 ABC transporter RI02_05565 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RI02_05575 PF13508 Acetyltransferase (GNAT) domain RI02_05580 PF03960 ArsC family RI02_05585 PF03741 Integral membrane protein TerC family RI02_05590 PF05389 Negative regulator of genetic competence (MecA) RI02_05595 PF13091 PLD-like domain RI02_05595 PF13396 Phospholipase_D-nuclease N-terminal RI02_05605 PF08439 Oligopeptidase F RI02_05605 PF01432 Peptidase family M3 RI02_05620 PF01152 Bacterial-like globin RI02_05625 PF01464 Transglycosylase SLT domain RI02_05630 PF01928 CYTH domain RI02_05640 PF04607 Region found in RelA / SpoT proteins RI02_05645 PF01513 ATP-NAD kinase RI02_05650 PF00849 RNA pseudouridylate synthase RI02_05655 PF00149 Calcineurin-like phosphoesterase RI02_05660 PF02254 TrkA-N domain RI02_05660 PF02080 TrkA-C domain RI02_05660 PF00999 Sodium/hydrogen exchanger family RI02_05665 PF03070 TENA/THI-4/PQQC family RI02_05670 PF02581 Thiamine monophosphate synthase RI02_05675 PF01266 FAD dependent oxidoreductase RI02_05680 PF02597 ThiS family RI02_05685 PF05690 Thiazole biosynthesis protein ThiG RI02_05690 PF00899 ThiF family RI02_05695 PF08543 Phosphomethylpyrimidine kinase RI02_05705 PF14153 Spore coat protein CotO RI02_05710 PF10612 Spore coat protein Z RI02_05715 PF10612 Spore coat protein Z RI02_05720 PF07552 Spore Coat Protein X and V domain RI02_05730 PF07552 Spore Coat Protein X and V domain RI02_05735 PF07098 Protein of unknown function (DUF1360) RI02_05750 PF14069 Stage VI sporulation protein F RI02_05755 PF00580 UvrD/REP helicase N-terminal domain RI02_05755 PF13361 UvrD-like helicase C-terminal domain RI02_05765 PF13673 Acetyltransferase (GNAT) domain RI02_05775 PF00756 Putative esterase RI02_05780 PF01053 Cys/Met metabolism PLP-dependent enzyme RI02_05785 PF01053 Cys/Met metabolism PLP-dependent enzyme RI02_05795 PF01381 Helix-turn-helix RI02_05810 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit RI02_05825 PF13176 Tetratricopeptide repeat RI02_05825 PF18801 response regulator aspartate phosphatase H, N terminal RI02_05835 PF01810 LysE type translocator RI02_05850 PF00302 Chloramphenicol acetyltransferase RI02_05875 PF10852 Protein of unknown function (DUF2651) RI02_05880 PF01636 Phosphotransferase enzyme family RI02_05885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RI02_05885 PF03466 LysR substrate binding domain RI02_05890 PF01177 Asp/Glu/Hydantoin racemase RI02_05905 PF03466 LysR substrate binding domain RI02_05905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RI02_05910 PF07690 Major Facilitator Superfamily RI02_05915 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RI02_05915 PF07992 Pyridine nucleotide-disulphide oxidoreductase RI02_05940 PF00842 Alanine racemase, C-terminal domain RI02_05940 PF01168 Alanine racemase, N-terminal domain RI02_05945 PF00107 Zinc-binding dehydrogenase RI02_05945 PF08240 Alcohol dehydrogenase GroES-like domain RI02_05950 PF00440 Bacterial regulatory proteins, tetR family RI02_05960 PF00669 Bacterial flagellin N-terminal helical region RI02_05960 PF00700 Bacterial flagellin C-terminal helical region RI02_05965 PF00669 Bacterial flagellin N-terminal helical region RI02_05965 PF00700 Bacterial flagellin C-terminal helical region RI02_05970 PF00700 Bacterial flagellin C-terminal helical region RI02_05970 PF00669 Bacterial flagellin N-terminal helical region RI02_05975 PF00700 Bacterial flagellin C-terminal helical region RI02_05975 PF00669 Bacterial flagellin N-terminal helical region RI02_05980 PF01494 FAD binding domain RI02_05995 PF05908 Poly-gamma-glutamate hydrolase RI02_06000 PF06114 IrrE N-terminal-like domain RI02_06005 PF01510 N-acetylmuramoyl-L-alanine amidase RI02_06005 PF01476 LysM domain RI02_06005 PF01471 Putative peptidoglycan binding domain RI02_06010 PF14185 Antitoxin SpoIISB, type II toxin-antitoxin system RI02_06015 PF14171 Toxin SpoIISA, type II toxin-antitoxin system RI02_06025 PF01384 Phosphate transporter family RI02_06030 PF01865 Protein of unknown function DUF47 RI02_06050 PF00528 Binding-protein-dependent transport system inner membrane component RI02_06055 PF00528 Binding-protein-dependent transport system inner membrane component RI02_06060 PF17850 CysA C-terminal regulatory domain RI02_06060 PF12857 TOBE-like domain RI02_06060 PF00005 ABC transporter RI02_06070 PF03611 PTS system sugar-specific permease component RI02_06085 PF00107 Zinc-binding dehydrogenase RI02_06085 PF08240 Alcohol dehydrogenase GroES-like domain RI02_06090 PF00676 Dehydrogenase E1 component RI02_06095 PF02780 Transketolase, C-terminal domain RI02_06095 PF00364 Biotin-requiring enzyme RI02_06095 PF02779 Transketolase, pyrimidine binding domain RI02_06100 PF02817 e3 binding domain RI02_06100 PF00364 Biotin-requiring enzyme RI02_06100 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RI02_06105 PF07992 Pyridine nucleotide-disulphide oxidoreductase RI02_06105 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RI02_06120 PF04198 Putative sugar-binding domain RI02_06130 PF13520 Amino acid permease RI02_06135 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RI02_06145 PF13180 PDZ domain RI02_06150 PF03807 NADP oxidoreductase coenzyme F420-dependent RI02_06150 PF14748 Pyrroline-5-carboxylate reductase dimerisation RI02_06155 PF04951 D-aminopeptidase RI02_06160 PF00528 Binding-protein-dependent transport system inner membrane component RI02_06165 PF12911 N-terminal TM domain of oligopeptide transport permease C RI02_06165 PF00528 Binding-protein-dependent transport system inner membrane component RI02_06170 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RI02_06170 PF00005 ABC transporter RI02_06175 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RI02_06180 PF02016 LD-carboxypeptidase N-terminal domain RI02_06180 PF17676 LD-carboxypeptidase C-terminal domain RI02_06185 PF13378 Enolase C-terminal domain-like RI02_06185 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RI02_06190 PF00877 NlpC/P60 family RI02_06195 PF00005 ABC transporter RI02_06195 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RI02_06205 PF03061 Thioesterase superfamily RI02_06210 PF03551 Transcriptional regulator PadR-like family RI02_06225 PF13302 Acetyltransferase (GNAT) domain RI02_06230 PF02805 Metal binding domain of Ada RI02_06230 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RI02_06230 PF12833 Helix-turn-helix domain RI02_06230 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RI02_06235 PF00893 Small Multidrug Resistance protein RI02_06240 PF00893 Small Multidrug Resistance protein RI02_06250 PF01842 ACT domain RI02_06250 PF00551 Formyl transferase RI02_06255 PF00696 Amino acid kinase family RI02_06255 PF01472 PUA domain RI02_06260 PF00171 Aldehyde dehydrogenase family RI02_06265 PF18801 response regulator aspartate phosphatase H, N terminal RI02_06275 PF02566 OsmC-like protein RI02_06280 PF01047 MarR family RI02_06285 PF02566 OsmC-like protein RI02_06290 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RI02_06295 PF01717 Cobalamin-independent synthase, Catalytic domain RI02_06295 PF08267 Cobalamin-independent synthase, N-terminal domain RI02_06300 PF00082 Subtilase family RI02_06315 PF00072 Response regulator receiver domain RI02_06315 PF00486 Transcriptional regulatory protein, C terminal RI02_06320 PF00512 His Kinase A (phospho-acceptor) domain RI02_06320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RI02_06320 PF00672 HAMP domain RI02_06325 PF03413 Peptidase propeptide and YPEB domain RI02_06330 PF03413 Peptidase propeptide and YPEB domain RI02_06340 PF01769 Divalent cation transporter RI02_06340 PF00571 CBS domain RI02_06340 PF03448 MgtE intracellular N domain RI02_06350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RI02_06350 PF03466 LysR substrate binding domain RI02_06360 PF13411 MerR HTH family regulatory protein RI02_06370 PF01047 MarR family RI02_06375 PF03707 Bacterial signalling protein N terminal repeat RI02_06375 PF00563 EAL domain RI02_06375 PF00990 Diguanylate cyclase, GGDEF domain RI02_06380 PF09335 SNARE associated Golgi protein RI02_06385 PF03741 Integral membrane protein TerC family RI02_06390 PF04542 Sigma-70 region 2 RI02_06395 PF12791 Anti-sigma factor N-terminus RI02_06400 PF00269 Small, acid-soluble spore proteins, alpha/beta type RI02_06405 PF08876 Domain of unknown function (DUF1836) RI02_06410 PF01435 Peptidase family M48 RI02_06415 PF02386 Cation transport protein RI02_06420 PF04239 Protein of unknown function (DUF421) RI02_06430 PF01757 Acyltransferase family RI02_06435 PF13426 PAS domain RI02_06435 PF13188 PAS domain RI02_06435 PF00512 His Kinase A (phospho-acceptor) domain RI02_06435 PF00989 PAS fold RI02_06435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RI02_06440 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RI02_06440 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RI02_06445 PF01008 Initiation factor 2 subunit family RI02_06450 PF01636 Phosphotransferase enzyme family RI02_06455 PF00155 Aminotransferase class I and II RI02_06460 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain RI02_06460 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain RI02_06470 PF00596 Class II Aldolase and Adducin N-terminal domain RI02_06475 PF03079 ARD/ARD' family RI02_06480 PF09388 Spo0E like sporulation regulatory protein RI02_06485 PF00512 His Kinase A (phospho-acceptor) domain RI02_06485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RI02_06485 PF02743 Cache domain RI02_06490 PF01047 MarR family RI02_06495 PF00691 OmpA family RI02_06495 PF13677 Membrane MotB of proton-channel complex MotA/MotB RI02_06500 PF01618 MotA/TolQ/ExbB proton channel family RI02_06505 PF07724 AAA domain (Cdc48 subfamily) RI02_06505 PF00004 ATPase family associated with various cellular activities (AAA) RI02_06505 PF10431 C-terminal, D2-small domain, of ClpB protein RI02_06505 PF17871 AAA lid domain RI02_06515 PF06508 Queuosine biosynthesis protein QueC RI02_06520 PF01242 6-pyruvoyl tetrahydropterin synthase RI02_06525 PF04055 Radical SAM superfamily RI02_06530 PF14489 QueF-like protein RI02_06545 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) RI02_06555 PF07486 Cell Wall Hydrolase RI02_06560 PF01943 Polysaccharide biosynthesis protein RI02_06565 PF00578 AhpC/TSA family RI02_06575 PF01321 Creatinase/Prolidase N-terminal domain RI02_06575 PF00557 Metallopeptidase family M24 RI02_06580 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RI02_06580 PF00356 Bacterial regulatory proteins, lacI family RI02_06585 PF00874 PRD domain RI02_06585 PF03123 CAT RNA binding domain RI02_06590 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RI02_06590 PF02378 Phosphotransferase system, EIIC RI02_06590 PF00367 phosphotransferase system, EIIB RI02_06595 PF00381 PTS HPr component phosphorylation site RI02_06600 PF02896 PEP-utilising enzyme, TIM barrel domain RI02_06600 PF00391 PEP-utilising enzyme, mobile domain RI02_06600 PF05524 PEP-utilising enzyme, N-terminal RI02_06605 PF11132 Transcriptional regulator protein (SplA) RI02_06615 PF00672 HAMP domain RI02_06615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RI02_06615 PF02743 Cache domain RI02_06620 PF00106 short chain dehydrogenase RI02_06625 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RI02_06625 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RI02_06630 PF00188 Cysteine-rich secretory protein family RI02_06635 PF00905 Penicillin binding protein transpeptidase domain RI02_06635 PF03717 Penicillin-binding Protein dimerisation domain RI02_06645 PF00155 Aminotransferase class I and II RI02_06650 PF16916 Dimerisation domain of Zinc Transporter RI02_06650 PF01545 Cation efflux family RI02_06655 PF06271 RDD family RI02_06665 PF00072 Response regulator receiver domain RI02_06665 PF01584 CheW-like domain RI02_06670 PF14177 YkyB-like protein RI02_06675 PF12833 Helix-turn-helix domain RI02_06675 PF02311 AraC-like ligand binding domain RI02_06680 PF00892 EamA-like transporter family RI02_06695 PF07690 Major Facilitator Superfamily RI02_06700 PF01476 LysM domain RI02_06700 PF03734 L,D-transpeptidase catalytic domain RI02_06705 PF10518 TAT (twin-arginine translocation) pathway signal sequence RI02_06705 PF00149 Calcineurin-like phosphoesterase RI02_06715 PF10388 EAL-domain associated signalling protein domain RI02_06715 PF00563 EAL domain RI02_06720 PF05067 Manganese containing catalase RI02_06725 PF08796 Protein of unknown function (DUF1797) RI02_06730 PF04308 Ribonuclease H-like RI02_06735 PF14156 Antirepressor AbbA RI02_06745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RI02_06745 PF03466 LysR substrate binding domain RI02_06755 PF00258 Flavodoxin RI02_06765 PF00258 Flavodoxin RI02_06770 PF14602 Hexapeptide repeat of succinyl-transferase RI02_06770 PF00132 Bacterial transferase hexapeptide (six repeats) RI02_06770 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal RI02_06775 PF07687 Peptidase dimerisation domain RI02_06775 PF01546 Peptidase family M20/M25/M40 RI02_06780 PF03698 Uncharacterised protein family (UPF0180) RI02_06785 PF00924 Mechanosensitive ion channel RI02_06790 PF00578 AhpC/TSA family RI02_06790 PF10417 C-terminal domain of 1-Cys peroxiredoxin RI02_06795 PF00578 AhpC/TSA family RI02_06810 PF12804 MobA-like NTP transferase domain RI02_06815 PF00899 ThiF family RI02_06820 PF03453 MoeA N-terminal region (domain I and II) RI02_06820 PF03454 MoeA C-terminal region (domain IV) RI02_06820 PF00994 Probable molybdopterin binding domain RI02_06825 PF03205 Molybdopterin guanine dinucleotide synthesis protein B RI02_06830 PF02391 MoaE protein RI02_06835 PF02597 ThiS family RI02_06850 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RI02_06855 PF00005 ABC transporter RI02_06860 PF12704 MacB-like periplasmic core domain RI02_06860 PF02687 FtsX-like permease family RI02_06865 PF00455 DeoR C terminal sensor domain RI02_06865 PF08220 DeoR-like helix-turn-helix domain RI02_06870 PF00294 pfkB family carbohydrate kinase RI02_06875 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RI02_06875 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RI02_06880 PF10502 Signal peptidase, peptidase S26 RI02_06890 PF12848 ABC transporter RI02_06890 PF00005 ABC transporter RI02_06905 PF02073 Thermophilic metalloprotease (M29) RI02_06915 PF18277 AbrB C-terminal domain RI02_06915 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin RI02_06920 PF00512 His Kinase A (phospho-acceptor) domain RI02_06920 PF00989 PAS fold RI02_06920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RI02_06925 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like RI02_06930 PF02254 TrkA-N domain RI02_06930 PF02080 TrkA-C domain RI02_06935 PF01979 Amidohydrolase family RI02_06935 PF13382 Adenine deaminase C-terminal domain RI02_06940 PF00753 Metallo-beta-lactamase superfamily RI02_06940 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain RI02_06940 PF17770 Ribonuclease J C-terminal domain RI02_06945 PF07288 Protein of unknown function (DUF1447) RI02_06955 PF01327 Polypeptide deformylase RI02_06970 PF00676 Dehydrogenase E1 component RI02_06975 PF02780 Transketolase, C-terminal domain RI02_06975 PF02779 Transketolase, pyrimidine binding domain RI02_06980 PF00364 Biotin-requiring enzyme RI02_06980 PF02817 e3 binding domain RI02_06980 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RI02_06985 PF07992 Pyridine nucleotide-disulphide oxidoreductase RI02_06985 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RI02_06995 PF13790 SR1 protein RI02_07000 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain RI02_07000 PF01276 Orn/Lys/Arg decarboxylase, major domain RI02_07005 PF05256 Uncharacterised protein family (UPF0223) RI02_07010 PF06335 Protein of unknown function (DUF1054) RI02_07020 PF00459 Inositol monophosphatase family RI02_07035 PF08281 Sigma-70, region 4 RI02_07035 PF04542 Sigma-70 region 2 RI02_07040 PF13490 Putative zinc-finger RI02_07055 PF00009 Elongation factor Tu GTP binding domain RI02_07055 PF00679 Elongation factor G C-terminus RI02_07055 PF14492 Elongation Factor G, domain II RI02_07055 PF03144 Elongation factor Tu domain 2 RI02_07060 PF14036 YlaH-like protein RI02_07065 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) RI02_07070 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) RI02_07075 PF02562 PhoH-like protein RI02_07075 PF13638 PIN domain RI02_07085 PF04960 Glutaminase RI02_07090 PF07408 Protein of unknown function (DUF1507) RI02_07095 PF01098 Cell cycle protein RI02_07100 PF02785 Biotin carboxylase C-terminal domain RI02_07100 PF00289 Biotin carboxylase, N-terminal domain RI02_07100 PF00364 Biotin-requiring enzyme RI02_07100 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RI02_07100 PF00682 HMGL-like RI02_07100 PF02436 Conserved carboxylase domain RI02_07105 PF03441 FAD binding domain of DNA photolyase RI02_07105 PF00875 DNA photolyase RI02_07110 PF02628 Cytochrome oxidase assembly protein RI02_07115 PF01040 UbiA prenyltransferase family RI02_07120 PF02790 Cytochrome C oxidase subunit II, transmembrane domain RI02_07120 PF00034 Cytochrome c RI02_07120 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RI02_07125 PF00115 Cytochrome C and Quinol oxidase polypeptide I RI02_07130 PF00510 Cytochrome c oxidase subunit III RI02_07135 PF03626 Prokaryotic Cytochrome C oxidase subunit IV RI02_07140 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) RI02_07145 PF08868 YugN-like family RI02_07150 PF00571 CBS domain RI02_07155 PF00188 Cysteine-rich secretory protein family RI02_07155 PF14504 CAP-associated N-terminal RI02_07160 PF14071 Putative coat protein RI02_07165 PF14003 YlbE-like protein RI02_07175 PF06133 Control of competence regulator ComK, YlbF/YmcA RI02_07180 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) RI02_07190 PF01467 Cytidylyltransferase-like RI02_07195 PF07670 Nucleoside recognition RI02_07200 PF01734 Patatin-like phospholipase RI02_07205 PF13180 PDZ domain RI02_07205 PF05362 Lon protease (S16) C-terminal proteolytic domain RI02_07210 PF05636 HIGH Nucleotidyl Transferase RI02_07215 PF02620 Large ribosomal RNA subunit accumulation protein YceD RI02_07220 PF01783 Ribosomal L32p protein family RI02_07230 PF00583 Acetyltransferase (GNAT) family RI02_07235 PF02558 Ketopantoate reductase PanE/ApbA RI02_07235 PF08546 Ketopantoate reductase PanE/ApbA C terminal RI02_07240 PF10079 Bacillithiol biosynthesis BshC RI02_07245 PF02381 MraZ protein, putative antitoxin-like RI02_07250 PF01795 MraW methylase family RI02_07260 PF03717 Penicillin-binding Protein dimerisation domain RI02_07260 PF03793 PASTA domain RI02_07260 PF00905 Penicillin binding protein transpeptidase domain RI02_07270 PF03793 PASTA domain RI02_07270 PF03717 Penicillin-binding Protein dimerisation domain RI02_07270 PF00905 Penicillin binding protein transpeptidase domain RI02_07275 PF02875 Mur ligase family, glutamate ligase domain RI02_07275 PF01225 Mur ligase family, catalytic domain RI02_07275 PF08245 Mur ligase middle domain RI02_07280 PF00953 Glycosyl transferase family 4 RI02_07280 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 RI02_07285 PF08245 Mur ligase middle domain RI02_07285 PF02875 Mur ligase family, glutamate ligase domain RI02_07290 PF01098 Cell cycle protein RI02_07295 PF04101 Glycosyltransferase family 28 C-terminal domain RI02_07295 PF03033 Glycosyltransferase family 28 N-terminal domain RI02_07300 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain RI02_07300 PF01565 FAD binding domain RI02_07305 PF08478 POTRA domain, FtsQ-type RI02_07310 PF05949 Bacterial protein of unknown function (DUF881) RI02_07315 PF05949 Bacterial protein of unknown function (DUF881) RI02_07320 PF06947 Protein of unknown function (DUF1290) RI02_07325 PF02491 SHS2 domain inserted in FTSA RI02_07330 PF12327 FtsZ family, C-terminal domain RI02_07330 PF00091 Tubulin/FtsZ family, GTPase domain RI02_07335 PF05922 Peptidase inhibitor I9 RI02_07335 PF00082 Subtilase family RI02_07340 PF03419 Sporulation factor SpoIIGA RI02_07345 PF04545 Sigma-70, region 4 RI02_07345 PF04542 Sigma-70 region 2 RI02_07350 PF04539 Sigma-70 region 3 RI02_07350 PF04545 Sigma-70, region 4 RI02_07350 PF04542 Sigma-70 region 2 RI02_07355 PF04198 Putative sugar-binding domain RI02_07370 PF03608 PTS system enzyme II sorbitol-specific factor RI02_07375 PF03612 Sorbitol phosphotransferase enzyme II N-terminus RI02_07375 PF07663 Sorbitol phosphotransferase enzyme II C-terminus RI02_07380 PF03829 PTS system glucitol/sorbitol-specific IIA component RI02_07385 PF00005 ABC transporter RI02_07390 PF05239 PRC-barrel domain RI02_07395 PF02578 Multi-copper polyphenol oxidoreductase laccase RI02_07400 PF01168 Alanine racemase, N-terminal domain RI02_07405 PF04472 Cell division protein SepF RI02_07410 PF02325 YGGT family RI02_07415 PF01479 S4 domain RI02_07415 PF17774 Putative RNA-binding domain in YlmH RI02_07420 PF05103 DivIVA protein RI02_07425 PF00133 tRNA synthetases class I (I, L, M and V) RI02_07425 PF08264 Anticodon-binding domain of tRNA RI02_07430 PF01258 Prokaryotic dksA/traR C4-type zinc finger RI02_07435 PF01252 Signal peptidase (SPase) II RI02_07440 PF01479 S4 domain RI02_07440 PF00849 RNA pseudouridylate synthase RI02_07445 PF00156 Phosphoribosyl transferase domain RI02_07450 PF00860 Permease family RI02_07455 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RI02_07455 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RI02_07460 PF01979 Amidohydrolase family RI02_07465 PF00117 Glutamine amidotransferase class-I RI02_07465 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RI02_07470 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RI02_07470 PF02142 MGS-like domain RI02_07470 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RI02_07475 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B RI02_07480 PF01180 Dihydroorotate dehydrogenase RI02_07485 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RI02_07490 PF00156 Phosphoribosyl transferase domain RI02_07500 PF01507 Phosphoadenosine phosphosulfate reductase family RI02_07505 PF01384 Phosphate transporter family RI02_07510 PF01747 ATP-sulfurylase RI02_07510 PF14306 PUA-like domain RI02_07520 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RI02_07525 PF01903 CbiX RI02_07535 PF05670 NFACT protein RNA binding domain RI02_07540 PF00690 Cation transporter/ATPase, N-terminus RI02_07540 PF00689 Cation transporting ATPase, C-terminus RI02_07545 PF08340 Domain of unknown function (DUF1732) RI02_07545 PF03755 YicC-like family, N-terminal region RI02_07550 PF04025 Domain of unknown function (DUF370) RI02_07555 PF00625 Guanylate kinase RI02_07560 PF01192 RNA polymerase Rpb6 RI02_07565 PF04127 DNA / pantothenate metabolism flavoprotein RI02_07565 PF02441 Flavoprotein RI02_07570 PF04851 Type III restriction enzyme, res subunit RI02_07570 PF18319 PriA DNA helicase Cys-rich region (CRR) domain RI02_07570 PF17764 3′ DNA-binding domain (3′BD) RI02_07570 PF18074 Primosomal protein N C-terminal domain RI02_07570 PF00271 Helicase conserved C-terminal domain RI02_07575 PF01327 Polypeptide deformylase RI02_07580 PF00551 Formyl transferase RI02_07580 PF02911 Formyl transferase, C-terminal domain RI02_07585 PF01029 NusB family RI02_07585 PF01189 16S rRNA methyltransferase RsmB/F RI02_07590 PF04055 Radical SAM superfamily RI02_07600 PF00069 Protein kinase domain RI02_07600 PF03793 PASTA domain RI02_07605 PF03193 RsgA GTPase RI02_07605 PF16745 RsgA N-terminal domain RI02_07610 PF00834 Ribulose-phosphate 3 epimerase family RI02_07615 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain RI02_07615 PF04263 Thiamin pyrophosphokinase, catalytic domain RI02_07620 PF08183 Stage V sporulation protein family RI02_07625 PF00830 Ribosomal L28 family RI02_07630 PF03780 Asp23 family, cell envelope-related function RI02_07635 PF13684 Dihydroxyacetone kinase family RI02_07635 PF02734 DAK2 domain RI02_07640 PF01842 ACT domain RI02_07640 PF03315 Serine dehydratase beta chain RI02_07645 PF03313 Serine dehydratase alpha chain RI02_07650 PF17191 RecG wedge domain RI02_07650 PF00271 Helicase conserved C-terminal domain RI02_07650 PF00270 DEAD/DEAH box helicase RI02_07660 PF02504 Fatty acid synthesis protein RI02_07665 PF00698 Acyl transferase domain RI02_07675 PF00550 Phosphopantetheine attachment site RI02_07680 PF00035 Double-stranded RNA binding motif RI02_07680 PF14622 Ribonuclease-III-like RI02_07685 PF06470 SMC proteins Flexible Hinge Domain RI02_07685 PF02463 RecF/RecN/SMC N terminal domain RI02_07690 PF02881 SRP54-type protein, helical bundle domain RI02_07690 PF00448 SRP54-type protein, GTPase domain RI02_07695 PF04297 Putative helix-turn-helix protein, YlxM / p13 like RI02_07700 PF02881 SRP54-type protein, helical bundle domain RI02_07700 PF00448 SRP54-type protein, GTPase domain RI02_07700 PF02978 Signal peptide binding domain RI02_07705 PF00886 Ribosomal protein S16 RI02_07715 PF11068 YlqD protein RI02_07720 PF05239 PRC-barrel domain RI02_07720 PF01782 RimM N-terminal domain RI02_07725 PF01746 tRNA (Guanine-1)-methyltransferase RI02_07730 PF01245 Ribosomal protein L19 RI02_07735 PF01926 50S ribosome-binding GTPase RI02_07740 PF01351 Ribonuclease HII RI02_07750 PF01312 FlhB HrpN YscU SpaS Family RI02_07755 PF00549 CoA-ligase RI02_07755 PF08442 ATP-grasp domain RI02_07760 PF00549 CoA-ligase RI02_07760 PF02629 CoA binding domain RI02_07765 PF02481 DNA recombination-mediator protein A RI02_07770 PF01131 DNA topoisomerase RI02_07770 PF01396 Topoisomerase DNA binding C4 zinc finger RI02_07770 PF01751 Toprim domain RI02_07775 PF01134 Glucose inhibited division protein A RI02_07780 PF02899 Phage integrase, N-terminal SAM-like domain RI02_07780 PF00589 Phage integrase family RI02_07785 PF00227 Proteasome subunit RI02_07790 PF00004 ATPase family associated with various cellular activities (AAA) RI02_07790 PF10431 C-terminal, D2-small domain, of ClpB protein RI02_07790 PF07724 AAA domain (Cdc48 subfamily) RI02_07795 PF06018 CodY GAF-like domain RI02_07795 PF08222 CodY helix-turn-helix domain RI02_07800 PF00460 Flagella basal body rod protein RI02_07805 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RI02_07805 PF00460 Flagella basal body rod protein RI02_07810 PF02049 Flagellar hook-basal body complex protein FliE RI02_07815 PF01514 Secretory protein of YscJ/FliF family RI02_07815 PF08345 Flagellar M-ring protein C-terminal RI02_07820 PF14842 FliG N-terminal domain RI02_07820 PF14841 FliG middle domain RI02_07820 PF01706 FliG C-terminal domain RI02_07825 PF02108 Flagellar assembly protein FliH RI02_07830 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RI02_07830 PF02874 ATP synthase alpha/beta family, beta-barrel domain RI02_07830 PF18269 T3SS EscN ATPase C-terminal domain RI02_07835 PF02050 Flagellar FliJ protein RI02_07840 PF03448 MgtE intracellular N domain RI02_07845 PF02120 Flagellar hook-length control protein FliK RI02_07850 PF03963 Flagellar hook capping protein - N-terminal region RI02_07855 PF00460 Flagella basal body rod protein RI02_07855 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RI02_07860 PF06289 Flagellar and Swarming motility proteins RI02_07865 PF03748 Flagellar basal body-associated protein FliL RI02_07870 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RI02_07870 PF02154 Flagellar motor switch protein FliM RI02_07875 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RI02_07875 PF04509 CheC-like family RI02_07880 PF00072 Response regulator receiver domain RI02_07885 PF04347 Flagellar biosynthesis protein, FliO RI02_07890 PF00813 FliP family RI02_07895 PF01313 Bacterial export proteins, family 3 RI02_07900 PF01311 Bacterial export proteins, family 1 RI02_07905 PF01312 FlhB HrpN YscU SpaS Family RI02_07910 PF00771 FHIPEP family RI02_07915 PF00448 SRP54-type protein, GTPase domain RI02_07920 PF10609 NUBPL iron-transfer P-loop NTPase RI02_07925 PF01339 CheB methylesterase RI02_07925 PF00072 Response regulator receiver domain RI02_07930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RI02_07930 PF01584 CheW-like domain RI02_07930 PF01627 Hpt domain RI02_07930 PF07194 P2 response regulator binding domain RI02_07930 PF02895 Signal transducing histidine kinase, homodimeric domain RI02_07935 PF01584 CheW-like domain RI02_07940 PF04509 CheC-like family RI02_07945 PF03975 CheD chemotactic sensory transduction RI02_07950 PF04545 Sigma-70, region 4 RI02_07950 PF04539 Sigma-70 region 3 RI02_07950 PF04542 Sigma-70 region 2 RI02_07960 PF00318 Ribosomal protein S2 RI02_07965 PF00889 Elongation factor TS RI02_07970 PF00696 Amino acid kinase family RI02_07975 PF01765 Ribosome recycling factor RI02_07980 PF01255 Putative undecaprenyl diphosphate synthase RI02_07990 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain RI02_07990 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase RI02_07990 PF13288 DXP reductoisomerase C-terminal domain RI02_07995 PF02163 Peptidase family M50 RI02_07995 PF17820 PDZ domain RI02_08000 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RI02_08000 PF04073 Aminoacyl-tRNA editing domain RI02_08000 PF03129 Anticodon binding domain RI02_08005 PF14579 Helix-hairpin-helix motif RI02_08005 PF02811 PHP domain RI02_08005 PF07733 Bacterial DNA polymerase III alpha NTPase domain RI02_08005 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RI02_08005 PF11490 DNA polymerase III polC-type N-terminus II RI02_08005 PF14480 DNA polymerase III polC-type N-terminus I RI02_08005 PF00929 Exonuclease RI02_08010 PF00759 Glycosyl hydrolase family 9 RI02_08010 PF00942 Cellulose binding domain RI02_08015 PF00759 Glycosyl hydrolase family 9 RI02_08015 PF00942 Cellulose binding domain RI02_08015 PF02011 Glycosyl hydrolase family 48 RI02_08020 PF00331 Glycosyl hydrolase family 10 RI02_08020 PF12791 Anti-sigma factor N-terminus RI02_08035 PF17384 RimP C-terminal SH3 domain RI02_08035 PF02576 RimP N-terminal domain RI02_08040 PF08529 NusA N-terminal domain RI02_08040 PF13184 NusA-like KH domain RI02_08040 PF00575 S1 RNA binding domain RI02_08045 PF04296 Protein of unknown function (DUF448) RI02_08050 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RI02_08055 PF04760 Translation initiation factor IF-2, N-terminal region RI02_08055 PF00009 Elongation factor Tu GTP binding domain RI02_08055 PF11987 Translation-initiation factor 2 RI02_08060 PF04456 Protein of unknown function (DUF503) RI02_08065 PF02033 Ribosome-binding factor A RI02_08070 PF16198 tRNA pseudouridylate synthase B C-terminal domain RI02_08070 PF01509 TruB family pseudouridylate synthase (N terminal domain) RI02_08075 PF06574 FAD synthetase RI02_08075 PF01687 Riboflavin kinase RI02_08080 PF00312 Ribosomal protein S15 RI02_08085 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain RI02_08085 PF03725 3' exoribonuclease family, domain 2 RI02_08085 PF01138 3' exoribonuclease family, domain 1 RI02_08085 PF00013 KH domain RI02_08085 PF00575 S1 RNA binding domain RI02_08090 PF01522 Polysaccharide deacetylase RI02_08095 PF00675 Insulinase (Peptidase family M16) RI02_08095 PF05193 Peptidase M16 inactive domain RI02_08105 PF05239 PRC-barrel domain RI02_08110 PF16924 Dipicolinate synthase subunit A N-terminal domain RI02_08110 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RI02_08115 PF02441 Flavoprotein RI02_08120 PF02774 Semialdehyde dehydrogenase, dimerisation domain RI02_08120 PF01118 Semialdehyde dehydrogenase, NAD binding domain RI02_08125 PF00696 Amino acid kinase family RI02_08125 PF13840 ACT domain RI02_08130 PF00701 Dihydrodipicolinate synthetase family RI02_08135 PF00753 Metallo-beta-lactamase superfamily RI02_08135 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain RI02_08135 PF17770 Ribonuclease J C-terminal domain RI02_08140 PF00574 Clp protease RI02_08145 PF14035 YlzJ-like protein RI02_08150 PF01580 FtsK/SpoIIIE family RI02_08150 PF17854 FtsK alpha domain RI02_08150 PF09397 Ftsk gamma domain RI02_08155 PF00392 Bacterial regulatory proteins, gntR family RI02_08155 PF07702 UTRA domain RI02_08160 PF07690 Major Facilitator Superfamily RI02_08165 PF03176 MMPL family RI02_08170 PF05193 Peptidase M16 inactive domain RI02_08175 PF00675 Insulinase (Peptidase family M16) RI02_08175 PF05193 Peptidase M16 inactive domain RI02_08185 PF03176 MMPL family RI02_08195 PF11588 Protein of unknown function (DUF3243) RI02_08200 PF11868 Protein of unknown function (DUF3388) RI02_08205 PF13464 Domain of unknown function (DUF4115) RI02_08210 PF01066 CDP-alcohol phosphatidyltransferase RI02_08215 PF18146 Damage-inducible protein CinA KH domain RI02_08215 PF00994 Probable molybdopterin binding domain RI02_08215 PF02464 Competence-damaged protein RI02_08220 PF00154 recA bacterial DNA recombination protein RI02_08225 PF00013 KH domain RI02_08225 PF01966 HD domain RI02_08225 PF12072 Domain of unknown function (DUF3552) RI02_08230 PF13277 YmdB-like protein RI02_08235 PF04232 Stage V sporulation protein S (SpoVS) RI02_08240 PF00873 AcrB/AcrD/AcrF family RI02_08245 PF00107 Zinc-binding dehydrogenase RI02_08245 PF08240 Alcohol dehydrogenase GroES-like domain RI02_08250 PF00155 Aminotransferase class I and II RI02_08255 PF04055 Radical SAM superfamily RI02_08255 PF00919 Uncharacterized protein family UPF0004 RI02_08255 PF01938 TRAM domain RI02_08260 PF06133 Control of competence regulator ComK, YlbF/YmcA RI02_08265 PF10628 Outer spore coat protein E (CotE) RI02_08270 PF05188 MutS domain II RI02_08270 PF00488 MutS domain V RI02_08270 PF05192 MutS domain III RI02_08270 PF05190 MutS family domain IV RI02_08270 PF01624 MutS domain I RI02_08275 PF01119 DNA mismatch repair protein, C-terminal domain RI02_08275 PF08676 MutL C terminal dimerisation domain RI02_08280 PF17735 Biofilm surface layer A RI02_08295 PF02559 CarD-like/TRCF domain RI02_08300 PF05908 Poly-gamma-glutamate hydrolase RI02_08305 PF18801 response regulator aspartate phosphatase H, N terminal RI02_08310 PF00082 Subtilase family RI02_08315 PF05908 Poly-gamma-glutamate hydrolase RI02_08320 PF02566 OsmC-like protein RI02_08325 PF00893 Small Multidrug Resistance protein RI02_08330 PF00893 Small Multidrug Resistance protein RI02_08345 PF12788 YmaF family RI02_08355 PF17209 Hfq protein RI02_08370 PF07972 NrdI Flavodoxin like RI02_08375 PF08343 Ribonucleotide reductase N-terminal RI02_08375 PF00317 Ribonucleotide reductase, all-alpha domain RI02_08375 PF02867 Ribonucleotide reductase, barrel domain RI02_08380 PF00268 Ribonucleotide reductase, small chain RI02_08390 PF01520 N-acetylmuramoyl-L-alanine amidase RI02_08390 PF05036 Sporulation related domain RI02_08395 PF17866 AAA lid domain RI02_08395 PF00004 ATPase family associated with various cellular activities (AAA) RI02_08400 PF01926 50S ribosome-binding GTPase RI02_08400 PF13167 GTP-binding GTPase N-terminal RI02_08400 PF16360 GTP-binding GTPase Middle Region RI02_08405 PF06838 Methionine gamma-lyase RI02_08410 PF13411 MerR HTH family regulatory protein RI02_08415 PF00120 Glutamine synthetase, catalytic domain RI02_08415 PF03951 Glutamine synthetase, beta-Grasp domain RI02_08435 PF17874 MalT-like TPR region RI02_08435 PF18801 response regulator aspartate phosphatase H, N terminal RI02_08455 PF04740 LXG domain of WXG superfamily RI02_08460 PF04634 Protein of unknown function, DUF600 RI02_08475 PF01569 PAP2 superfamily RI02_08480 PF08818 Domain of unknown function (DU1801) RI02_08500 PF18801 response regulator aspartate phosphatase H, N terminal RI02_08510 PF06912 Protein of unknown function (DUF1275) RI02_08515 PF01068 ATP dependent DNA ligase domain RI02_08520 PF02735 Ku70/Ku80 beta-barrel domain RI02_08525 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) RI02_08535 PF02082 Transcriptional regulator RI02_08540 PF05368 NmrA-like family RI02_08550 PF02754 Cysteine-rich domain RI02_08555 PF11870 Domain of unknown function (DUF3390) RI02_08555 PF13183 4Fe-4S dicluster domain RI02_08555 PF02589 LUD domain RI02_08560 PF02589 LUD domain RI02_08575 PF04239 Protein of unknown function (DUF421) RI02_08580 PF16295 Tetracyclin repressor-like, C-terminal domain RI02_08580 PF00440 Bacterial regulatory proteins, tetR family RI02_08585 PF00667 FAD binding domain RI02_08585 PF00067 Cytochrome P450 RI02_08585 PF00258 Flavodoxin RI02_08585 PF00175 Oxidoreductase NAD-binding domain RI02_08590 PF00089 Trypsin RI02_08595 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase RI02_08600 PF14040 Deoxyribonuclease NucA/NucB RI02_08605 PF01740 STAS domain RI02_08610 PF16800 IseA DL-endopeptidase inhibitor RI02_08620 PF01726 LexA DNA binding domain RI02_08620 PF00717 Peptidase S24-like RI02_08625 PF01476 LysM domain RI02_08630 PF00239 Resolvase, N terminal domain RI02_08635 PF05979 Bacterial protein of unknown function (DUF896) RI02_08640 PF00456 Transketolase, thiamine diphosphate binding domain RI02_08640 PF02780 Transketolase, C-terminal domain RI02_08640 PF02779 Transketolase, pyrimidine binding domain RI02_08645 PF10747 Sporulation inhibitor of replication protein SirA RI02_08650 PF03672 Uncharacterised protein family (UPF0154) RI02_08655 PF09388 Spo0E like sporulation regulatory protein RI02_08660 PF02683 Cytochrome C biogenesis protein transmembrane region RI02_08665 PF07301 Protein of unknown function (DUF1453) RI02_08670 PF11084 Protein of unknown function (DUF2621) RI02_08680 PF08179 Small acid-soluble spore protein P family RI02_08690 PF00330 Aconitase family (aconitate hydratase) RI02_08690 PF00694 Aconitase C-terminal domain RI02_08695 PF00578 AhpC/TSA family RI02_08700 PF13040 Fur-regulated basic protein B RI02_08705 PF08177 Small acid-soluble spore protein N family RI02_08715 PF03061 Thioesterase superfamily RI02_08725 PF01521 Iron-sulphur cluster biosynthesis RI02_08730 PF02660 Glycerol-3-phosphate acyltransferase RI02_08735 PF13380 CoA binding domain RI02_08740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RI02_08740 PF01751 Toprim domain RI02_08740 PF00204 DNA gyrase B RI02_08740 PF00986 DNA gyrase B subunit, carboxyl terminus RI02_08745 PF03989 DNA gyrase C-terminal domain, beta-propeller RI02_08745 PF00521 DNA gyrase/topoisomerase IV, subunit A RI02_08755 PF07690 Major Facilitator Superfamily RI02_08760 PF00180 Isocitrate/isopropylmalate dehydrogenase RI02_08770 PF01451 Low molecular weight phosphotyrosine protein phosphatase RI02_08775 PF02040 Arsenical pump membrane protein RI02_08780 PF01022 Bacterial regulatory protein, arsR family RI02_08790 PF01323 DSBA-like thioredoxin domain RI02_08805 PF00440 Bacterial regulatory proteins, tetR family RI02_08810 PF02525 Flavodoxin-like fold RI02_08815 PF01638 HxlR-like helix-turn-helix RI02_08820 PF00291 Pyridoxal-phosphate dependent enzyme RI02_08825 PF01042 Endoribonuclease L-PSP RI02_08840 PF01494 FAD binding domain RI02_08860 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RI02_08865 PF00934 PE family RI02_08865 PF07859 alpha/beta hydrolase fold RI02_08870 PF13411 MerR HTH family regulatory protein RI02_08875 PF00232 Glycosyl hydrolase family 1 RI02_08880 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RI02_08880 PF02378 Phosphotransferase system, EIIC RI02_08880 PF00367 phosphotransferase system, EIIB RI02_08885 PF03123 CAT RNA binding domain RI02_08885 PF00874 PRD domain RI02_08895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RI02_08895 PF00512 His Kinase A (phospho-acceptor) domain RI02_08900 PF00072 Response regulator receiver domain RI02_08900 PF00486 Transcriptional regulatory protein, C terminal RI02_08905 PF17189 Glycosyl hydrolase family 30 beta sandwich domain RI02_08905 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain RI02_08910 PF04616 Glycosyl hydrolases family 43 RI02_08910 PF03422 Carbohydrate binding module (family 6) RI02_08915 PF00171 Aldehyde dehydrogenase family RI02_08920 PF11975 Family 4 glycosyl hydrolase C-terminal domain RI02_08920 PF02056 Family 4 glycosyl hydrolase RI02_08925 PF00528 Binding-protein-dependent transport system inner membrane component RI02_08930 PF00528 Binding-protein-dependent transport system inner membrane component RI02_08935 PF01547 Bacterial extracellular solute-binding protein RI02_08940 PF00356 Bacterial regulatory proteins, lacI family RI02_08945 PF00834 Ribulose-phosphate 3 epimerase family RI02_08960 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RI02_08995 PF14449 Pre-toxin TG RI02_08995 PF04740 LXG domain of WXG superfamily RI02_08995 PF14410 HNH/ENDO VII superfamily nuclease with conserved GHE residues RI02_09000 PF01047 MarR family RI02_09005 PF07690 Major Facilitator Superfamily RI02_09010 PF01116 Fructose-bisphosphate aldolase class-II RI02_09015 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RI02_09015 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RI02_09015 PF02378 Phosphotransferase system, EIIC RI02_09020 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RI02_09020 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RI02_09025 PF00294 pfkB family carbohydrate kinase RI02_09030 PF01418 Helix-turn-helix domain, rpiR family RI02_09030 PF01380 SIS domain RI02_09035 PF13091 PLD-like domain RI02_09055 PF00171 Aldehyde dehydrogenase family RI02_09060 PF00175 Oxidoreductase NAD-binding domain RI02_09060 PF00258 Flavodoxin RI02_09060 PF00667 FAD binding domain RI02_09065 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RI02_09065 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RI02_09070 PF16177 Acetyl-coenzyme A synthetase N-terminus RI02_09070 PF00501 AMP-binding enzyme RI02_09070 PF13193 AMP-binding enzyme C-terminal domain RI02_09075 PF01039 Carboxyl transferase domain RI02_09080 PF00378 Enoyl-CoA hydratase/isomerase RI02_09085 PF00682 HMGL-like RI02_09090 PF00364 Biotin-requiring enzyme RI02_09095 PF02785 Biotin carboxylase C-terminal domain RI02_09095 PF00289 Biotin carboxylase, N-terminal domain RI02_09095 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RI02_09100 PF13193 AMP-binding enzyme C-terminal domain RI02_09100 PF00501 AMP-binding enzyme RI02_09105 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RI02_09105 PF02770 Acyl-CoA dehydrogenase, middle domain RI02_09105 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RI02_09110 PF02638 Glycosyl hydrolase-like 10 RI02_09115 PF13350 Tyrosine phosphatase family RI02_09120 PF00455 DeoR C terminal sensor domain RI02_09120 PF08220 DeoR-like helix-turn-helix domain RI02_09125 PF14552 Tautomerase enzyme RI02_09135 PF05651 Putative sugar diacid recognition RI02_09135 PF13556 PucR C-terminal helix-turn-helix domain RI02_09135 PF17853 GGDEF-like domain RI02_09140 PF02913 FAD linked oxidases, C-terminal domain RI02_09140 PF01565 FAD binding domain RI02_09145 PF13183 4Fe-4S dicluster domain RI02_09145 PF02754 Cysteine-rich domain RI02_09150 PF03323 Bacillus/Clostridium GerA spore germination protein RI02_09155 PF03845 Spore germination protein RI02_09165 PF12728 Helix-turn-helix domain RI02_09170 PF04138 GtrA-like protein RI02_09175 PF00483 Nucleotidyl transferase RI02_09180 PF09335 SNARE associated Golgi protein RI02_09185 PF02602 Uroporphyrinogen-III synthase HemD RI02_09195 PF00296 Luciferase-like monooxygenase RI02_09210 PF01554 MatE RI02_09215 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family RI02_09220 PF01095 Pectinesterase RI02_09225 PF04239 Protein of unknown function (DUF421) RI02_09230 PF00355 Rieske [2Fe-2S] domain RI02_09235 PF07992 Pyridine nucleotide-disulphide oxidoreductase RI02_09235 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RI02_09235 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RI02_09235 PF04324 BFD-like [2Fe-2S] binding domain RI02_09235 PF18267 Rubredoxin NAD+ reductase C-terminal domain RI02_09240 PF00384 Molybdopterin oxidoreductase RI02_09240 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RI02_09240 PF01568 Molydopterin dinucleotide binding domain RI02_09245 PF04324 BFD-like [2Fe-2S] binding domain RI02_09245 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RI02_09245 PF07992 Pyridine nucleotide-disulphide oxidoreductase RI02_09245 PF18267 Rubredoxin NAD+ reductase C-terminal domain RI02_09250 PF07690 Major Facilitator Superfamily RI02_09255 PF07992 Pyridine nucleotide-disulphide oxidoreductase RI02_09255 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RI02_09260 PF01493 GXGXG motif RI02_09260 PF01645 Conserved region in glutamate synthase RI02_09260 PF04898 Glutamate synthase central domain RI02_09260 PF00310 Glutamine amidotransferases class-II RI02_09265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RI02_09265 PF03466 LysR substrate binding domain RI02_09270 PF00664 ABC transporter transmembrane region RI02_09270 PF00005 ABC transporter RI02_09275 PF00664 ABC transporter transmembrane region RI02_09275 PF00005 ABC transporter RI02_09280 PF13411 MerR HTH family regulatory protein RI02_09280 PF06445 GyrI-like small molecule binding domain RI02_09285 PF00583 Acetyltransferase (GNAT) family RI02_09290 PF00171 Aldehyde dehydrogenase family RI02_09295 PF01472 PUA domain RI02_09295 PF00696 Amino acid kinase family RI02_09300 PF03807 NADP oxidoreductase coenzyme F420-dependent RI02_09300 PF14748 Pyrroline-5-carboxylate reductase dimerisation RI02_09305 PF00067 Cytochrome P450 RI02_09310 PF01568 Molydopterin dinucleotide binding domain RI02_09310 PF00384 Molybdopterin oxidoreductase RI02_09310 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RI02_09315 PF00457 Glycosyl hydrolases family 11 RI02_09320 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RI02_09320 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RI02_09325 PF01261 Xylose isomerase-like TIM barrel RI02_09330 PF00480 ROK family RI02_09335 PF04616 Glycosyl hydrolases family 43 RI02_09335 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain RI02_09345 PF01588 Putative tRNA binding domain RI02_09355 PF14158 YndJ-like protein RI02_09360 PF13761 Domain of unknown function (DUF4166) RI02_09370 PF00440 Bacterial regulatory proteins, tetR family RI02_09370 PF13305 Tetracyclin repressor-like, C-terminal domain RI02_09375 PF00753 Metallo-beta-lactamase superfamily RI02_09380 PF06445 GyrI-like small molecule binding domain RI02_09385 PF13280 WYL domain RI02_09385 PF08279 HTH domain RI02_09395 PF01022 Bacterial regulatory protein, arsR family RI02_09400 PF00324 Amino acid permease RI02_09415 PF03972 MmgE/PrpD family RI02_09420 PF00285 Citrate synthase, C-terminal domain RI02_09425 PF04238 Protein of unknown function (DUF420) RI02_09435 PF01476 LysM domain RI02_09435 PF06725 3D domain RI02_09440 PF09382 RQC domain RI02_09440 PF00270 DEAD/DEAH box helicase RI02_09440 PF16124 RecQ zinc-binding RI02_09440 PF00570 HRDC domain RI02_09440 PF00271 Helicase conserved C-terminal domain RI02_09450 PF01258 Prokaryotic dksA/traR C4-type zinc finger RI02_09460 PF08000 Bacterial PH domain RI02_09475 PF00171 Aldehyde dehydrogenase family RI02_09480 PF13243 Squalene-hopene cyclase C-terminal domain RI02_09480 PF13249 Squalene-hopene cyclase N-terminal domain RI02_09485 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RI02_09485 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RI02_09490 PF01758 Sodium Bile acid symporter family RI02_09495 PF02817 e3 binding domain RI02_09495 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RI02_09495 PF00364 Biotin-requiring enzyme RI02_09500 PF00676 Dehydrogenase E1 component RI02_09500 PF16078 2-oxoglutarate dehydrogenase N-terminus RI02_09500 PF02779 Transketolase, pyrimidine binding domain RI02_09500 PF16870 2-oxoglutarate dehydrogenase C-terminal RI02_09505 PF00092 von Willebrand factor type A domain RI02_09510 PF07728 AAA domain (dynein-related subfamily) RI02_09515 PF00080 Copper/zinc superoxide dismutase (SODC) RI02_09515 PF13627 Prokaryotic lipoprotein-attachment site RI02_09520 PF01476 LysM domain RI02_09520 PF00877 NlpC/P60 family RI02_09525 PF10372 Bacterial membrane-spanning protein N-terminus RI02_09525 PF02457 DisA bacterial checkpoint controller nucleotide-binding RI02_09530 PF01554 MatE RI02_09535 PF02585 GlcNAc-PI de-N-acetylase RI02_09540 PF08830 Protein of unknown function (DUF1806) RI02_09550 PF00892 EamA-like transporter family RI02_09565 PF01638 HxlR-like helix-turn-helix RI02_09570 PF00881 Nitroreductase family RI02_09575 PF11755 Protein of unknown function (DUF3311) RI02_09580 PF00474 Sodium:solute symporter family RI02_09585 PF03572 Peptidase family S41 RI02_09585 PF17820 PDZ domain RI02_09585 PF01471 Putative peptidoglycan binding domain RI02_09590 PF08241 Methyltransferase domain RI02_09605 PF02557 D-alanyl-D-alanine carboxypeptidase RI02_09610 PF01048 Phosphorylase superfamily RI02_09615 PF14191 YodL-like RI02_09620 PF01569 PAP2 superfamily RI02_09625 PF14162 YozD-like protein RI02_09635 PF06855 YozE SAM-like fold RI02_09640 PF14122 YokU-like protein, putative antitoxin RI02_09645 PF12544 Lysine-2,3-aminomutase RI02_09650 PF00158 Sigma-54 interaction domain RI02_09650 PF13426 PAS domain RI02_09650 PF02954 Bacterial regulatory protein, Fis family RI02_09655 PF00535 Glycosyl transferase family 2 RI02_09670 PF12996 DUF based on E. rectale Gene description (DUF3880) RI02_09680 PF02719 Polysaccharide biosynthesis protein RI02_09685 PF01641 SelR domain RI02_09690 PF01625 Peptide methionine sulfoxide reductase RI02_09695 PF01047 MarR family RI02_09715 PF17431 Uncharacterized YmpT-like RI02_09720 PF09911 Uncharacterized protein conserved in bacteria (DUF2140) RI02_09725 PF13472 GDSL-like Lipase/Acylhydrolase family RI02_09730 PF02630 SCO1/SenC RI02_09735 PF02645 Uncharacterised protein, DegV family COG1307 RI02_09740 PF10751 Protein of unknown function (DUF2535) RI02_09745 PF00291 Pyridoxal-phosphate dependent enzyme RI02_09745 PF00585 C-terminal regulatory domain of Threonine dehydratase RI02_09750 PF00158 Sigma-54 interaction domain RI02_09750 PF08461 Ribonuclease R winged-helix domain RI02_09755 PF03006 Haemolysin-III related RI02_09765 PF00186 Dihydrofolate reductase RI02_09770 PF00303 Thymidylate synthase RI02_09775 PF04608 Phosphatidylglycerophosphatase A RI02_09780 PF14005 YpjP-like protein RI02_09785 PF04445 Putative SAM-dependent methyltransferase RI02_09790 PF06491 Disulphide isomerase RI02_09795 PF00920 Dehydratase family RI02_09800 PF08712 Scaffold protein Nfu/NifU N terminal RI02_09800 PF13769 Virulence factor RI02_09805 PF01966 HD domain RI02_09810 PF00255 Glutathione peroxidase RI02_09815 PF01268 Formate--tetrahydrofolate ligase RI02_09820 PF04204 Homoserine O-succinyltransferase RI02_09825 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase RI02_09825 PF00534 Glycosyl transferases group 1 RI02_09835 PF00313 'Cold-shock' DNA-binding domain RI02_09845 PF10782 Zinc-finger RI02_09850 PF13456 Reverse transcriptase-like RI02_09855 PF02592 Putative vitamin uptake transporter RI02_09860 PF13456 Reverse transcriptase-like RI02_09870 PF01367 5'-3' exonuclease, C-terminal SAM fold RI02_09870 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RI02_09880 PF00350 Dynamin family RI02_09890 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family RI02_09895 PF02797 Chalcone and stilbene synthases, C-terminal domain RI02_09895 PF00195 Chalcone and stilbene synthases, N-terminal domain RI02_09900 PF13673 Acetyltransferase (GNAT) domain RI02_09900 PF04229 GrpB protein RI02_09905 PF01522 Polysaccharide deacetylase RI02_09910 PF00860 Permease family RI02_09920 PF02074 Carboxypeptidase Taq (M32) metallopeptidase RI02_09925 PF13307 Helicase C-terminal domain RI02_09935 PF01170 Putative RNA methylase family UPF0020 RI02_09935 PF02926 THUMP domain RI02_09945 PF05103 DivIVA protein RI02_09950 PF06908 YspA SLOG family RI02_09955 PF11122 Inner spore coat protein D RI02_09960 PF13482 RNase_H superfamily RI02_09965 PF09369 Domain of unknown function (DUF1998) RI02_09965 PF00270 DEAD/DEAH box helicase RI02_09965 PF00271 Helicase conserved C-terminal domain RI02_09970 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RI02_09975 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RI02_09985 PF14179 YppG-like protein RI02_10005 PF10720 Protein of unknown function (DUF2515) RI02_10010 PF03838 Recombination protein U RI02_10015 PF00912 Transglycosylase RI02_10015 PF00905 Penicillin binding protein transpeptidase domain RI02_10025 PF00633 Helix-hairpin-helix motif RI02_10025 PF10576 Iron-sulfur binding domain of endonuclease III RI02_10025 PF00730 HhH-GPD superfamily base excision DNA repair protein RI02_10030 PF07261 Replication initiation and membrane attachment RI02_10035 PF00152 tRNA synthetases class II (D, K and N) RI02_10035 PF01336 OB-fold nucleic acid binding domain RI02_10040 PF17881 Domain of unknown function (DUF5590) RI02_10040 PF03413 Peptidase propeptide and YPEB domain RI02_10045 PF14084 Protein of unknown function (DUF4264) RI02_10050 PF04851 Type III restriction enzyme, res subunit RI02_10050 PF13307 Helicase C-terminal domain RI02_10050 PF00929 Exonuclease RI02_10055 PF02261 Aspartate decarboxylase RI02_10060 PF02569 Pantoate-beta-alanine ligase RI02_10065 PF02548 Ketopantoate hydroxymethyltransferase RI02_10070 PF02237 Biotin protein ligase C terminal domain RI02_10070 PF03099 Biotin/lipoate A/B protein ligase family RI02_10070 PF08279 HTH domain RI02_10075 PF13735 tRNA nucleotidyltransferase domain 2 putative RI02_10075 PF12627 Probable RNA and SrmB- binding site of polymerase A RI02_10075 PF01743 Poly A polymerase head domain RI02_10080 PF13439 Glycosyltransferase Family 4 RI02_10080 PF00534 Glycosyl transferases group 1 RI02_10085 PF02585 GlcNAc-PI de-N-acetylase RI02_10090 PF02142 MGS-like domain RI02_10095 PF05173 Dihydrodipicolinate reductase, C-terminus RI02_10095 PF01113 Dihydrodipicolinate reductase, N-terminus RI02_10100 PF03819 MazG nucleotide pyrophosphohydrolase domain RI02_10105 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 RI02_10105 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) RI02_10110 PF09577 Sporulation protein YpjB (SpoYpjB) RI02_10115 PF07187 Protein of unknown function (DUF1405) RI02_10120 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RI02_10120 PF00032 Cytochrome b(C-terminal)/b6/petD RI02_10125 PF00033 Cytochrome b/b6/petB RI02_10130 PF00355 Rieske [2Fe-2S] domain RI02_10135 PF10673 Protein of unknown function (DUF2487) RI02_10140 PF08858 IDEAL domain RI02_10140 PF08864 UPF0302 domain RI02_10150 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RI02_10155 PF01842 ACT domain RI02_10155 PF02153 Prephenate dehydrogenase RI02_10160 PF00155 Aminotransferase class I and II RI02_10165 PF00290 Tryptophan synthase alpha chain RI02_10170 PF00291 Pyridoxal-phosphate dependent enzyme RI02_10175 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase RI02_10180 PF00218 Indole-3-glycerol phosphate synthase RI02_10185 PF02885 Glycosyl transferase family, helical bundle domain RI02_10185 PF00591 Glycosyl transferase family, a/b domain RI02_10190 PF04715 Anthranilate synthase component I, N terminal region RI02_10190 PF00425 chorismate binding enzyme RI02_10195 PF07736 Chorismate mutase type I RI02_10200 PF01761 3-dehydroquinate synthase RI02_10205 PF01264 Chorismate synthase RI02_10210 PF03705 CheR methyltransferase, all-alpha domain RI02_10210 PF01739 CheR methyltransferase, SAM binding domain RI02_10215 PF00334 Nucleoside diphosphate kinase RI02_10220 PF00348 Polyprenyl synthetase RI02_10225 PF01209 ubiE/COQ5 methyltransferase family RI02_10230 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 RI02_10235 PF02081 Tryptophan RNA-binding attenuator protein RI02_10240 PF01227 GTP cyclohydrolase I RI02_10245 PF00216 Bacterial DNA-binding protein RI02_10250 PF09547 Stage IV sporulation protein A (spore_IV_A) RI02_10260 PF10966 Protein of unknown function (DUF2768) RI02_10265 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RI02_10265 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus RI02_10270 PF01926 50S ribosome-binding GTPase RI02_10270 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal RI02_10280 PF14045 YIEGIA protein RI02_10290 PF14140 YpzI-like protein RI02_10300 PF01070 FMN-dependent dehydrogenase RI02_10305 PF00575 S1 RNA binding domain RI02_10310 PF02224 Cytidylate kinase RI02_10315 PF17313 Family of unknown function (DUF5359) RI02_10320 PF07238 PilZ domain RI02_10320 PF12945 Flagellar protein YcgR RI02_10325 PF14620 YpeB sporulation RI02_10325 PF03413 Peptidase propeptide and YPEB domain RI02_10330 PF01471 Putative peptidoglycan binding domain RI02_10330 PF07486 Cell Wall Hydrolase RI02_10335 PF13367 PrsW family intramembrane metalloprotease RI02_10345 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RI02_10345 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RI02_10350 PF05389 Negative regulator of genetic competence (MecA) RI02_10355 PF00149 Calcineurin-like phosphoesterase RI02_10360 PF10864 Protein of unknown function (DUF2663) RI02_10365 PF01476 LysM domain RI02_10370 PF02517 CPBP intramembrane metalloprotease RI02_10375 PF00270 DEAD/DEAH box helicase RI02_10375 PF00271 Helicase conserved C-terminal domain RI02_10380 PF14493 Helix-turn-helix domain RI02_10390 PF12822 ECF transporter, substrate-specific component RI02_10395 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RI02_10395 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RI02_10395 PF01842 ACT domain RI02_10400 PF01551 Peptidase family M23 RI02_10400 PF01476 LysM domain RI02_10410 PF08281 Sigma-70, region 4 RI02_10410 PF04542 Sigma-70 region 2 RI02_10415 PF00672 HAMP domain RI02_10415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RI02_10415 PF18698 Histidine kinase sensor domain RI02_10415 PF00512 His Kinase A (phospho-acceptor) domain RI02_10415 PF00989 PAS fold RI02_10420 PF00486 Transcriptional regulatory protein, C terminal RI02_10420 PF00072 Response regulator receiver domain RI02_10425 PF01578 Cytochrome C assembly protein RI02_10430 PF05140 ResB-like family RI02_10435 PF00578 AhpC/TSA family RI02_10440 PF00849 RNA pseudouridylate synthase RI02_10440 PF01479 S4 domain RI02_10445 PF07670 Nucleoside recognition RI02_10450 PF07670 Nucleoside recognition RI02_10455 PF07943 Penicillin-binding protein 5, C-terminal domain RI02_10455 PF00768 D-alanyl-D-alanine carboxypeptidase RI02_10460 PF13047 Protein of unknown function (DUF3907) RI02_10465 PF04079 Segregation and condensation complex subunit ScpB RI02_10470 PF02616 Segregation and condensation protein ScpA RI02_10480 PF03745 Domain of unknown function (DUF309) RI02_10490 PF00583 Acetyltransferase (GNAT) family RI02_10495 PF00885 6,7-dimethyl-8-ribityllumazine synthase RI02_10500 PF00925 GTP cyclohydrolase II RI02_10500 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RI02_10505 PF00677 Lumazine binding domain RI02_10530 PF07690 Major Facilitator Superfamily RI02_10535 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RI02_10540 PF06207 Protein of unknown function (DUF1002) RI02_10545 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RI02_10545 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RI02_10550 PF03323 Bacillus/Clostridium GerA spore germination protein RI02_10555 PF14097 Stage V sporulation protein AE1 RI02_10560 PF03862 SpoVAC/SpoVAEB sporulation membrane protein RI02_10565 PF07451 Stage V sporulation protein AD (SpoVAD) RI02_10570 PF03862 SpoVAC/SpoVAEB sporulation membrane protein RI02_10575 PF13782 Stage V sporulation protein AB RI02_10580 PF12164 Stage V sporulation protein AA RI02_10585 PF04542 Sigma-70 region 2 RI02_10585 PF04545 Sigma-70, region 4 RI02_10585 PF04539 Sigma-70 region 3 RI02_10590 PF13581 Histidine kinase-like ATPase domain RI02_10595 PF01740 STAS domain RI02_10600 PF07943 Penicillin-binding protein 5, C-terminal domain RI02_10600 PF00768 D-alanyl-D-alanine carboxypeptidase RI02_10605 PF01048 Phosphorylase superfamily RI02_10610 PF01676 Metalloenzyme superfamily RI02_10615 PF00589 Phage integrase family RI02_10615 PF02899 Phage integrase, N-terminal SAM-like domain RI02_10620 PF14004 Protein of unknown function (DUF4227) RI02_10625 PF01475 Ferric uptake regulator family RI02_10630 PF01944 Stage II sporulation protein M RI02_10635 PF00082 Subtilase family RI02_10635 PF05922 Peptidase inhibitor I9 RI02_10650 PF13673 Acetyltransferase (GNAT) domain RI02_10660 PF00293 NUDIX domain RI02_10665 PF00248 Aldo/keto reductase family RI02_10675 PF12146 Serine aminopeptidase, S33 RI02_10680 PF18801 response regulator aspartate phosphatase H, N terminal RI02_10685 PF10827 Protein of unknown function (DUF2552) RI02_10690 PF01521 Iron-sulphur cluster biosynthesis RI02_10695 PF03330 Lytic transglycolase RI02_10700 PF04229 GrpB protein RI02_10700 PF13673 Acetyltransferase (GNAT) domain RI02_10705 PF00583 Acetyltransferase (GNAT) family RI02_10710 PF10787 Uncharacterised protein from bacillus cereus group RI02_10715 PF00817 impB/mucB/samB family RI02_10715 PF11799 impB/mucB/samB family C-terminal domain RI02_10720 PF08863 YolD-like protein RI02_10725 PF07690 Major Facilitator Superfamily RI02_10730 PF00485 Phosphoribulokinase / Uridine kinase family RI02_10735 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RI02_10735 PF07992 Pyridine nucleotide-disulphide oxidoreductase RI02_10745 PF00106 short chain dehydrogenase RI02_10750 PF00753 Metallo-beta-lactamase superfamily RI02_10755 PF03807 NADP oxidoreductase coenzyme F420-dependent RI02_10755 PF14748 Pyrroline-5-carboxylate reductase dimerisation RI02_10770 PF04055 Radical SAM superfamily RI02_10775 PF01546 Peptidase family M20/M25/M40 RI02_10780 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RI02_10785 PF12146 Serine aminopeptidase, S33 RI02_10790 PF12897 Alanine-glyoxylate amino-transferase RI02_10795 PF12706 Beta-lactamase superfamily domain RI02_10800 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain RI02_10800 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain RI02_10805 PF07702 UTRA domain RI02_10805 PF00392 Bacterial regulatory proteins, gntR family RI02_10810 PF00232 Glycosyl hydrolase family 1 RI02_10815 PF02378 Phosphotransferase system, EIIC RI02_10820 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit RI02_10825 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RI02_10840 PF06800 Sugar transport protein RI02_10845 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RI02_10845 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain RI02_10850 PF00817 impB/mucB/samB family RI02_10850 PF11798 IMS family HHH motif RI02_10850 PF11799 impB/mucB/samB family C-terminal domain RI02_10860 PF02096 60Kd inner membrane protein RI02_10865 PF01584 CheW-like domain RI02_10870 PF07687 Peptidase dimerisation domain RI02_10870 PF01546 Peptidase family M20/M25/M40 RI02_10875 PF01039 Carboxyl transferase domain RI02_10885 PF03734 L,D-transpeptidase catalytic domain RI02_10890 PF11728 Putative aromatic acid exporter C-terminal domain RI02_10890 PF06081 Aromatic acid exporter family member 1 RI02_10895 PF00005 ABC transporter RI02_10900 PF00528 Binding-protein-dependent transport system inner membrane component RI02_10905 PF00497 Bacterial extracellular solute-binding proteins, family 3 RI02_10910 PF06491 Disulphide isomerase RI02_10915 PF00781 Diacylglycerol kinase catalytic domain RI02_10925 PF02817 e3 binding domain RI02_10925 PF00364 Biotin-requiring enzyme RI02_10925 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RI02_10930 PF02779 Transketolase, pyrimidine binding domain RI02_10930 PF02780 Transketolase, C-terminal domain RI02_10935 PF00676 Dehydrogenase E1 component RI02_10940 PF07992 Pyridine nucleotide-disulphide oxidoreductase RI02_10940 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RI02_10945 PF00871 Acetokinase family RI02_10950 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RI02_10950 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RI02_10955 PF01515 Phosphate acetyl/butaryl transferase RI02_10960 PF00158 Sigma-54 interaction domain RI02_10960 PF02954 Bacterial regulatory protein, Fis family RI02_10960 PF00989 PAS fold RI02_10965 PF11118 Protein of unknown function (DUF2627) RI02_10970 PF03009 Glycerophosphoryl diester phosphodiesterase family RI02_10975 PF18801 response regulator aspartate phosphatase H, N terminal RI02_10980 PF08769 Sporulation initiation factor Spo0A C terminal RI02_10980 PF00072 Response regulator receiver domain RI02_10985 PF05580 SpoIVB peptidase S55 RI02_10985 PF17820 PDZ domain RI02_10990 PF13476 AAA domain RI02_10995 PF02863 Arginine repressor, C-terminal domain RI02_10995 PF01316 Arginine repressor, DNA binding domain RI02_11000 PF01479 S4 domain RI02_11000 PF01728 FtsJ-like methyltransferase RI02_11005 PF02779 Transketolase, pyrimidine binding domain RI02_11005 PF13292 1-deoxy-D-xylulose-5-phosphate synthase RI02_11005 PF02780 Transketolase, C-terminal domain RI02_11010 PF00348 Polyprenyl synthetase RI02_11015 PF02609 Exonuclease VII small subunit RI02_11020 PF13742 OB-fold nucleic acid binding domain RI02_11020 PF02601 Exonuclease VII, large subunit RI02_11025 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RI02_11025 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RI02_11030 PF01029 NusB family RI02_11035 PF03780 Asp23 family, cell envelope-related function RI02_11040 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RI02_11040 PF02785 Biotin carboxylase C-terminal domain RI02_11040 PF00289 Biotin carboxylase, N-terminal domain RI02_11045 PF00364 Biotin-requiring enzyme RI02_11050 PF12685 SpoIIIAH-like protein RI02_11060 PF09581 Stage III sporulation protein AF (Spore_III_AF) RI02_11065 PF09546 Stage III sporulation protein AE (spore_III_AE) RI02_11070 PF06686 Stage III sporulation protein AC/AD protein family RI02_11075 PF06686 Stage III sporulation protein AC/AD protein family RI02_11080 PF09548 Stage III sporulation protein AB (spore_III_AB) RI02_11090 PF10942 Protein of unknown function (DUF2619) RI02_11095 PF01132 Elongation factor P (EF-P) OB domain RI02_11095 PF08207 Elongation factor P (EF-P) KOW-like domain RI02_11095 PF09285 Elongation factor P, C-terminal RI02_11100 PF00557 Metallopeptidase family M24 RI02_11100 PF01321 Creatinase/Prolidase N-terminal domain RI02_11105 PF01220 Dehydroquinase class II RI02_11110 PF11085 Conserved membrane protein YqhR RI02_11115 PF07136 Protein of unknown function (DUF1385) RI02_11125 PF01734 Patatin-like phospholipase RI02_11130 PF02742 Iron dependent repressor, metal binding and dimerisation domain RI02_11130 PF01325 Iron dependent repressor, N-terminal DNA binding domain RI02_11135 PF03099 Biotin/lipoate A/B protein ligase family RI02_11140 PF00581 Rhodanese-like domain RI02_11145 PF02347 Glycine cleavage system P-protein RI02_11150 PF02347 Glycine cleavage system P-protein RI02_11155 PF01571 Aminomethyltransferase folate-binding domain RI02_11155 PF08669 Glycine cleavage T-protein C-terminal barrel domain RI02_11160 PF00176 SNF2 family N-terminal domain RI02_11160 PF00271 Helicase conserved C-terminal domain RI02_11165 PF11079 Bacterial protein YqhG of unknown function RI02_11175 PF08671 Anti-repressor SinI RI02_11175 PF01381 Helix-turn-helix RI02_11180 PF12389 Camelysin metallo-endopeptidase RI02_11195 PF13028 Protein of unknown function (DUF3889) RI02_11200 PF14038 YqzE-like protein RI02_11220 PF07963 Prokaryotic N-terminal methylation motif RI02_11225 PF07963 Prokaryotic N-terminal methylation motif RI02_11230 PF00482 Type II secretion system (T2SS), protein F RI02_11235 PF00437 Type II/IV secretion system protein RI02_11240 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain RI02_11240 PF01740 STAS domain RI02_11250 PF03960 ArsC family RI02_11255 PF11117 Protein of unknown function (DUF2626) RI02_11260 PF00753 Metallo-beta-lactamase superfamily RI02_11265 PF10958 Protein of unknown function (DUF2759) RI02_11270 PF01910 Thiamine-binding protein RI02_11275 PF07690 Major Facilitator Superfamily RI02_11285 PF00246 Zinc carboxypeptidase RI02_11290 PF00884 Sulfatase RI02_11295 PF00480 ROK family RI02_11300 PF06014 Bacterial protein of unknown function (DUF910) RI02_11305 PF01694 Rhomboid family RI02_11315 PF01812 5-formyltetrahydrofolate cyclo-ligase family RI02_11320 PF00471 Ribosomal protein L33 RI02_11340 PF00005 ABC transporter RI02_11345 PF00005 ABC transporter RI02_11350 PF00528 Binding-protein-dependent transport system inner membrane component RI02_11355 PF00528 Binding-protein-dependent transport system inner membrane component RI02_11360 PF12849 PBP superfamily domain RI02_11365 PF00905 Penicillin binding protein transpeptidase domain RI02_11365 PF03717 Penicillin-binding Protein dimerisation domain RI02_11370 PF07690 Major Facilitator Superfamily RI02_11375 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RI02_11375 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RI02_11380 PF04306 Protein of unknown function (DUF456) RI02_11385 PF06691 Protein of unknown function (DUF1189) RI02_11390 PF13302 Acetyltransferase (GNAT) domain RI02_11400 PF04551 GcpE protein RI02_11415 PF00480 ROK family RI02_11420 PF01475 Ferric uptake regulator family RI02_11425 PF00950 ABC 3 transport family RI02_11430 PF00005 ABC transporter RI02_11435 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) RI02_11435 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 RI02_11440 PF11116 Protein of unknown function (DUF2624) RI02_11445 PF01261 Xylose isomerase-like TIM barrel RI02_11450 PF00271 Helicase conserved C-terminal domain RI02_11450 PF00270 DEAD/DEAH box helicase RI02_11460 PF02401 LytB protein RI02_11465 PF01784 NIF3 (NGG1p interacting factor 3) RI02_11470 PF04816 tRNA (adenine(22)-N(1))-methyltransferase RI02_11475 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RI02_11480 PF04545 Sigma-70, region 4 RI02_11480 PF04542 Sigma-70 region 2 RI02_11480 PF00140 Sigma-70 factor, region 1.2 RI02_11480 PF03979 Sigma-70 factor, region 1.1 RI02_11480 PF04539 Sigma-70 region 3 RI02_11485 PF10410 DnaB-helicase binding domain of primase RI02_11485 PF08275 DNA primase catalytic core, N-terminal domain RI02_11485 PF01807 CHC2 zinc finger RI02_11490 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 RI02_11495 PF03618 Kinase/pyrophosphorylase RI02_11500 PF00571 CBS domain RI02_11500 PF08279 HTH domain RI02_11505 PF02092 Glycyl-tRNA synthetase beta subunit RI02_11510 PF02091 Glycyl-tRNA synthetase alpha subunit RI02_11515 PF11967 Recombination protein O N terminal RI02_11515 PF02565 Recombination protein O C terminal RI02_11520 PF14006 YqzL-like protein RI02_11525 PF07650 KH domain RI02_11525 PF01926 50S ribosome-binding GTPase RI02_11530 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RI02_11535 PF01219 Prokaryotic diacylglycerol kinase RI02_11540 PF02130 Uncharacterized protein family UPF0054 RI02_11545 PF07697 7TM-HD extracellular RI02_11545 PF07698 7TM receptor with intracellular HD hydrolase RI02_11545 PF01966 HD domain RI02_11550 PF02562 PhoH-like protein RI02_11555 PF06898 Putative stage IV sporulation protein YqfD RI02_11560 PF07873 YabP family RI02_11570 PF12127 SigmaW regulon antibacterial RI02_11575 PF01957 NfeD-like C-terminal, partner-binding RI02_11575 PF01972 Serine dehydrogenase proteinase RI02_11580 PF09424 Yqey-like protein RI02_11585 PF01165 Ribosomal protein S21 RI02_11590 PF02690 Na+/Pi-cotransporter RI02_11595 PF04055 Radical SAM superfamily RI02_11595 PF00919 Uncharacterized protein family UPF0004 RI02_11595 PF01938 TRAM domain RI02_11600 PF04452 RNA methyltransferase RI02_11610 PF00684 DnaJ central domain RI02_11610 PF01556 DnaJ C terminal domain RI02_11610 PF00226 DnaJ domain RI02_11615 PF00012 Hsp70 protein RI02_11620 PF01025 GrpE RI02_11625 PF01628 HrcA protein C terminal domain RI02_11630 PF04055 Radical SAM superfamily RI02_11630 PF06969 HemN C-terminal domain RI02_11635 PF06421 GTP-binding protein LepA C-terminus RI02_11635 PF03144 Elongation factor Tu domain 2 RI02_11635 PF00679 Elongation factor G C-terminus RI02_11635 PF00009 Elongation factor Tu GTP binding domain RI02_11640 PF12438 Protein of unknown function (DUF3679) RI02_11645 PF07454 Stage II sporulation protein P (SpoIIP) RI02_11650 PF03418 Germination protease RI02_11655 PF01649 Ribosomal protein S20 RI02_11660 PF06144 DNA polymerase III, delta subunit RI02_11665 PF14141 YqzM-like protein RI02_11670 PF00753 Metallo-beta-lactamase superfamily RI02_11670 PF13567 Domain of unknown function (DUF4131) RI02_11670 PF03772 Competence protein RI02_11675 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RI02_11680 PF10531 SLBB domain RI02_11685 PF14748 Pyrroline-5-carboxylate reductase dimerisation RI02_11685 PF03807 NADP oxidoreductase coenzyme F420-dependent RI02_11690 PF13649 Methyltransferase domain RI02_11700 PF01966 HD domain RI02_11705 PF01467 Cytidylyltransferase-like RI02_11710 PF01985 CRS1 / YhbY (CRM) domain RI02_11715 PF08501 Shikimate dehydrogenase substrate binding domain RI02_11715 PF01488 Shikimate / quinate 5-dehydrogenase RI02_11715 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RI02_11720 PF01926 50S ribosome-binding GTPase RI02_11730 PF08970 Sporulation inhibitor A RI02_11735 PF00657 GDSL-like Lipase/Acylhydrolase RI02_11740 PF01522 Polysaccharide deacetylase RI02_11745 PF13176 Tetratricopeptide repeat RI02_11745 PF18801 response regulator aspartate phosphatase H, N terminal RI02_11750 PF04545 Sigma-70, region 4 RI02_11750 PF04542 Sigma-70 region 2 RI02_11775 PF01522 Polysaccharide deacetylase RI02_11775 PF13739 Deacetylase PdaC RI02_11775 PF11738 Protein of unknown function (DUF3298) RI02_11790 PF09221 Bacteriocin class IId cyclical uberolysin-like RI02_11810 PF00005 ABC transporter RI02_11835 PF00083 Sugar (and other) transporter RI02_11840 PF11762 L-arabinose isomerase C-terminal domain RI02_11840 PF02610 L-arabinose isomerase RI02_11845 PF00596 Class II Aldolase and Adducin N-terminal domain RI02_11855 PF00392 Bacterial regulatory proteins, gntR family RI02_11865 PF01047 MarR family RI02_11875 PF01380 SIS domain RI02_11880 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RI02_11885 PF01638 HxlR-like helix-turn-helix RI02_11890 PF07859 alpha/beta hydrolase fold RI02_11900 PF14176 YxiJ-like protein RI02_11955 PF00905 Penicillin binding protein transpeptidase domain RI02_11960 PF02770 Acyl-CoA dehydrogenase, middle domain RI02_11960 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RI02_11960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RI02_11965 PF00005 ABC transporter RI02_11970 PF00497 Bacterial extracellular solute-binding proteins, family 3 RI02_11975 PF00528 Binding-protein-dependent transport system inner membrane component RI02_11980 PF00528 Binding-protein-dependent transport system inner membrane component RI02_11985 PF05067 Manganese containing catalase RI02_11990 PF08240 Alcohol dehydrogenase GroES-like domain RI02_11990 PF00107 Zinc-binding dehydrogenase RI02_12005 PF00465 Iron-containing alcohol dehydrogenase RI02_12010 PF01235 Sodium:alanine symporter family RI02_12015 PF03466 LysR substrate binding domain RI02_12015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RI02_12030 PF00005 ABC transporter RI02_12035 PF08240 Alcohol dehydrogenase GroES-like domain RI02_12035 PF00107 Zinc-binding dehydrogenase RI02_12040 PF08241 Methyltransferase domain RI02_12050 PF09501 Probable sporulation protein (Bac_small_yrzI) RI02_12055 PF14143 YrhC-like protein RI02_12060 PF01053 Cys/Met metabolism PLP-dependent enzyme RI02_12065 PF00291 Pyridoxal-phosphate dependent enzyme RI02_12070 PF01048 Phosphorylase superfamily RI02_12075 PF13649 Methyltransferase domain RI02_12080 PF10750 Protein of unknown function (DUF2536) RI02_12085 PF07423 Domain of unknown function (DUF1510) RI02_12090 PF03717 Penicillin-binding Protein dimerisation domain RI02_12090 PF00905 Penicillin binding protein transpeptidase domain RI02_12095 PF01272 Transcription elongation factor, GreA/GreB, C-term RI02_12095 PF03449 Transcription elongation factor, N-terminal RI02_12100 PF00485 Phosphoribulokinase / Uridine kinase family RI02_12105 PF16325 Peptidase family U32 C-terminal domain RI02_12105 PF01136 Peptidase family U32 RI02_12110 PF01136 Peptidase family U32 RI02_12115 PF01596 O-methyltransferase RI02_12120 PF02618 YceG-like family RI02_12125 PF02803 Thiolase, C-terminal domain RI02_12125 PF00108 Thiolase, N-terminal domain RI02_12130 PF00501 AMP-binding enzyme RI02_12130 PF13193 AMP-binding enzyme C-terminal domain RI02_12135 PF02632 BioY family RI02_12140 PF06949 Protein of unknown function (DUF1292) RI02_12145 PF03652 Holliday junction resolvase RI02_12150 PF06135 IreB regulatory phosphoprotein RI02_12155 PF02272 DHHA1 domain RI02_12155 PF01411 tRNA synthetases class II (A) RI02_12155 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RI02_12160 PF01594 AI-2E family transporter RI02_12165 PF00005 ABC transporter RI02_12170 PF00497 Bacterial extracellular solute-binding proteins, family 3 RI02_12175 PF00528 Binding-protein-dependent transport system inner membrane component RI02_12180 PF00528 Binding-protein-dependent transport system inner membrane component RI02_12195 PF05239 PRC-barrel domain RI02_12200 PF14490 Helix-hairpin-helix containing domain RI02_12200 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain RI02_12200 PF13538 UvrD-like helicase C-terminal domain RI02_12205 PF07719 Tetratricopeptide repeat RI02_12205 PF13181 Tetratricopeptide repeat RI02_12215 PF00266 Aminotransferase class-V RI02_12220 PF02082 Transcriptional regulator RI02_12225 PF16193 AAA C-terminal domain RI02_12225 PF12002 MgsA AAA+ ATPase C terminal RI02_12225 PF05496 Holliday junction DNA helicase RuvB P-loop domain RI02_12230 PF00899 ThiF family RI02_12240 PF00152 tRNA synthetases class II (D, K and N) RI02_12240 PF01336 OB-fold nucleic acid binding domain RI02_12240 PF02938 GAD domain RI02_12245 PF03129 Anticodon binding domain RI02_12245 PF13393 Histidyl-tRNA synthetase RI02_12250 PF08239 Bacterial SH3 domain RI02_12250 PF01520 N-acetylmuramoyl-L-alanine amidase RI02_12255 PF02580 D-Tyr-tRNA(Tyr) deacylase RI02_12260 PF13291 ACT domain RI02_12260 PF04607 Region found in RelA / SpoT proteins RI02_12260 PF02824 TGS domain RI02_12265 PF00156 Phosphoribosyl transferase domain RI02_12270 PF02272 DHHA1 domain RI02_12270 PF01368 DHH family RI02_12270 PF17768 RecJ OB domain RI02_12270 PF10141 Single-strand DNA-specific exonuclease, C terminal domain RI02_12275 PF06305 Lipopolysaccharide assembly protein A domain RI02_12280 PF02080 TrkA-C domain RI02_12285 PF07549 SecD/SecF GG Motif RI02_12285 PF02355 Protein export membrane protein RI02_12290 PF13797 Post-transcriptional regulator RI02_12295 PF14667 Polysaccharide biosynthesis C-terminal domain RI02_12295 PF01943 Polysaccharide biosynthesis protein RI02_12300 PF04239 Protein of unknown function (DUF421) RI02_12305 PF12670 Protein of unknown function (DUF3792) RI02_12310 PF02699 Preprotein translocase subunit RI02_12315 PF01702 Queuine tRNA-ribosyltransferase RI02_12320 PF02547 Queuosine biosynthesis protein RI02_12325 PF11146 Protein of unknown function (DUF2905) RI02_12330 PF17864 RuvB AAA lid domain RI02_12330 PF05491 RuvB C-terminal winged helix domain RI02_12330 PF05496 Holliday junction DNA helicase RuvB P-loop domain RI02_12335 PF07499 RuvA, C-terminal domain RI02_12335 PF01330 RuvA N terminal domain RI02_12340 PF08955 BofC C-terminal domain RI02_12340 PF08977 Bypass of Forespore C, N terminal RI02_12355 PF13667 ThiC-associated domain RI02_12355 PF01964 Radical SAM ThiC family RI02_12365 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) RI02_12370 PF01476 LysM domain RI02_12375 PF02445 Quinolinate synthetase A protein RI02_12380 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain RI02_12380 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain RI02_12385 PF02910 Fumarate reductase flavoprotein C-term RI02_12385 PF00890 FAD binding domain RI02_12390 PF00266 Aminotransferase class-V RI02_12395 PF08279 HTH domain RI02_12395 PF02829 3H domain RI02_12400 PF00800 Prephenate dehydratase RI02_12400 PF01842 ACT domain RI02_12405 PF01842 ACT domain RI02_12410 PF01926 50S ribosome-binding GTPase RI02_12410 PF01018 GTP1/OBG RI02_12410 PF09269 Domain of unknown function (DUF1967) RI02_12415 PF14682 Sporulation initiation phospho-transferase B, C-terminal RI02_12415 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain RI02_12420 PF01016 Ribosomal L27 protein RI02_12425 PF04327 Cysteine protease Prp RI02_12430 PF00829 Ribosomal prokaryotic L21 protein RI02_12435 PF02163 Peptidase family M50 RI02_12440 PF01551 Peptidase family M23 RI02_12445 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RI02_12450 PF03775 Septum formation inhibitor MinC, C-terminal domain RI02_12455 PF04093 rod shape-determining protein MreD RI02_12460 PF04085 rod shape-determining protein MreC RI02_12470 PF04002 RadC-like JAB domain RI02_12475 PF02545 Maf-like protein RI02_12485 PF06750 Bacterial Peptidase A24 N-terminal domain RI02_12485 PF01478 Type IV leader peptidase family RI02_12490 PF08245 Mur ligase middle domain RI02_12490 PF02875 Mur ligase family, glutamate ligase domain RI02_12495 PF10458 Valyl tRNA synthetase tRNA binding arm RI02_12495 PF00133 tRNA synthetases class I (I, L, M and V) RI02_12495 PF08264 Anticodon-binding domain of tRNA RI02_12510 PF01476 LysM domain RI02_12515 PF00202 Aminotransferase class-III RI02_12520 PF00490 Delta-aminolevulinic acid dehydratase RI02_12525 PF02602 Uroporphyrinogen-III synthase HemD RI02_12530 PF03900 Porphobilinogen deaminase, C-terminal domain RI02_12530 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain RI02_12535 PF01578 Cytochrome C assembly protein RI02_12540 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain RI02_12540 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain RI02_12540 PF01488 Shikimate / quinate 5-dehydrogenase RI02_12560 PF01926 50S ribosome-binding GTPase RI02_12565 PF00004 ATPase family associated with various cellular activities (AAA) RI02_12565 PF02190 ATP-dependent protease La (LON) substrate-binding domain RI02_12565 PF05362 Lon protease (S16) C-terminal proteolytic domain RI02_12570 PF00004 ATPase family associated with various cellular activities (AAA) RI02_12570 PF05362 Lon protease (S16) C-terminal proteolytic domain RI02_12575 PF10431 C-terminal, D2-small domain, of ClpB protein RI02_12575 PF07724 AAA domain (Cdc48 subfamily) RI02_12575 PF06689 ClpX C4-type zinc finger RI02_12580 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RI02_12580 PF05698 Bacterial trigger factor protein (TF) C-terminus RI02_12580 PF05697 Bacterial trigger factor protein (TF) RI02_12590 PF00694 Aconitase C-terminal domain RI02_12595 PF00330 Aconitase family (aconitate hydratase) RI02_12600 PF00180 Isocitrate/isopropylmalate dehydrogenase RI02_12605 PF08502 LeuA allosteric (dimerisation) domain RI02_12605 PF00682 HMGL-like RI02_12610 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain RI02_12610 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain RI02_12615 PF10369 Small subunit of acetolactate synthase RI02_12615 PF01842 ACT domain RI02_12620 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RI02_12620 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RI02_12620 PF00205 Thiamine pyrophosphate enzyme, central domain RI02_12625 PF01063 Amino-transferase class IV RI02_12630 PF10282 Lactonase, 7-bladed beta-propeller RI02_12635 PF06803 Protein of unknown function (DUF1232) RI02_12640 PF04914 DltD protein RI02_12645 PF00550 Phosphopantetheine attachment site RI02_12650 PF03062 MBOAT, membrane-bound O-acyltransferase family RI02_12655 PF00501 AMP-binding enzyme RI02_12655 PF13193 AMP-binding enzyme C-terminal domain RI02_12660 PF12459 D-Ala-teichoic acid biosynthesis protein RI02_12685 PF02384 N-6 DNA Methylase RI02_12690 PF04851 Type III restriction enzyme, res subunit RI02_12690 PF00271 Helicase conserved C-terminal domain RI02_12690 PF08463 EcoEI R protein C-terminal RI02_12690 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) RI02_12695 PF04740 LXG domain of WXG superfamily RI02_12695 PF14449 Pre-toxin TG RI02_12710 PF12850 Calcineurin-like phosphoesterase superfamily domain RI02_12715 PF01725 Ham1 family RI02_12720 PF03725 3' exoribonuclease family, domain 2 RI02_12720 PF01138 3' exoribonuclease family, domain 1 RI02_12725 PF10646 Sporulation and spore germination RI02_12730 PF01177 Asp/Glu/Hydantoin racemase RI02_12735 PF01047 MarR family RI02_12740 PF00196 Bacterial regulatory proteins, luxR family RI02_12765 PF01510 N-acetylmuramoyl-L-alanine amidase RI02_12765 PF01471 Putative peptidoglycan binding domain RI02_12770 PF05105 Bacteriophage holin family RI02_12800 PF13457 GW (Gly-Tryp) dipeptide domain RI02_12800 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RI02_12880 PF03354 Phage Terminase RI02_12920 PF00589 Phage integrase family RI02_12965 PF17356 Phage-like element PBSX protein XtrA RI02_13005 PF00196 Bacterial regulatory proteins, luxR family RI02_13010 PF03600 Citrate transporter RI02_13015 PF03466 LysR substrate binding domain RI02_13015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RI02_13020 PF04303 PrpF protein RI02_13025 PF02237 Biotin protein ligase C terminal domain RI02_13025 PF03099 Biotin/lipoate A/B protein ligase family RI02_13030 PF03061 Thioesterase superfamily RI02_13035 PF13183 4Fe-4S dicluster domain RI02_13035 PF13085 2Fe-2S iron-sulfur cluster binding domain RI02_13040 PF02910 Fumarate reductase flavoprotein C-term RI02_13040 PF00890 FAD binding domain RI02_13045 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RI02_13050 PF10702 Protein of unknown function (DUF2507) RI02_13060 PF00696 Amino acid kinase family RI02_13060 PF01842 ACT domain RI02_13060 PF13840 ACT domain RI02_13065 PF08459 UvrC Helix-hairpin-helix N-terminal RI02_13065 PF01541 GIY-YIG catalytic domain RI02_13065 PF02151 UvrB/uvrC motif RI02_13070 PF00085 Thioredoxin RI02_13075 PF06964 Alpha-L-arabinofuranosidase C-terminal domain RI02_13080 PF01012 Electron transfer flavoprotein domain RI02_13080 PF00766 Electron transfer flavoprotein FAD-binding domain RI02_13085 PF01012 Electron transfer flavoprotein domain RI02_13090 PF00378 Enoyl-CoA hydratase/isomerase RI02_13095 PF08359 YsiA-like protein, C-terminal region RI02_13095 PF00440 Bacterial regulatory proteins, tetR family RI02_13100 PF13193 AMP-binding enzyme C-terminal domain RI02_13100 PF00501 AMP-binding enzyme RI02_13110 PF03994 Domain of Unknown Function (DUF350) RI02_13115 PF01713 Smr domain RI02_13115 PF00488 MutS domain V RI02_13120 PF02811 PHP domain RI02_13120 PF14716 Helix-hairpin-helix domain RI02_13120 PF14791 DNA polymerase beta thumb RI02_13125 PF02674 Colicin V production protein RI02_13130 PF05164 Cell division protein ZapA RI02_13135 PF01351 Ribonuclease HII RI02_13135 PF11858 Domain of unknown function (DUF3378) RI02_13140 PF03484 tRNA synthetase B5 domain RI02_13140 PF01588 Putative tRNA binding domain RI02_13140 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain RI02_13140 PF03483 B3/4 domain RI02_13140 PF03147 Ferredoxin-fold anticodon binding domain RI02_13145 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RI02_13145 PF01409 tRNA synthetases class II core domain (F) RI02_13150 PF00588 SpoU rRNA Methylase family RI02_13150 PF08032 RNA 2'-O ribose methyltransferase substrate binding RI02_13155 PF14098 Small, acid-soluble spore protein I RI02_13160 PF13722 5TM C-terminal transporter carbon starvation CstA RI02_13160 PF02554 Carbon starvation protein CstA RI02_13165 PF05343 M42 glutamyl aminopeptidase RI02_13175 PF06961 Protein of unknown function (DUF1294) RI02_13180 PF00453 Ribosomal protein L20 RI02_13185 PF01632 Ribosomal protein L35 RI02_13190 PF05198 Translation initiation factor IF-3, N-terminal domain RI02_13190 PF00707 Translation initiation factor IF-3, C-terminal domain RI02_13200 PF13419 Haloacid dehalogenase-like hydrolase RI02_13205 PF13426 PAS domain RI02_13205 PF08447 PAS fold RI02_13205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RI02_13210 PF03129 Anticodon binding domain RI02_13210 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RI02_13210 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RI02_13210 PF02824 TGS domain RI02_13220 PF08812 YtxC-like family RI02_13225 PF09335 SNARE associated Golgi protein RI02_13230 PF07319 Primosomal protein DnaI N-terminus RI02_13230 PF01695 IstB-like ATP binding protein RI02_13235 PF07261 Replication initiation and membrane attachment RI02_13240 PF03477 ATP cone domain RI02_13250 PF02675 S-adenosylmethionine decarboxylase RI02_13255 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RI02_13255 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RI02_13260 PF01121 Dephospho-CoA kinase RI02_13265 PF02659 Putative manganese efflux pump RI02_13270 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RI02_13270 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RI02_13270 PF06827 Zinc finger found in FPG and IleRS RI02_13275 PF00476 DNA polymerase family A RI02_13275 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RI02_13275 PF01367 5'-3' exonuclease, C-terminal SAM fold RI02_13280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RI02_13280 PF16736 Single Cache-like RI02_13280 PF00512 His Kinase A (phospho-acceptor) domain RI02_13280 PF00989 PAS fold RI02_13285 PF00486 Transcriptional regulatory protein, C terminal RI02_13285 PF00072 Response regulator receiver domain RI02_13290 PF00056 lactate/malate dehydrogenase, NAD binding domain RI02_13290 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RI02_13295 PF00180 Isocitrate/isopropylmalate dehydrogenase RI02_13300 PF00285 Citrate synthase, C-terminal domain RI02_13305 PF04284 Protein of unknown function (DUF441) RI02_13310 PF01594 AI-2E family transporter RI02_13315 PF04186 FxsA cytoplasmic membrane protein RI02_13320 PF00391 PEP-utilising enzyme, mobile domain RI02_13320 PF02887 Pyruvate kinase, alpha/beta domain RI02_13320 PF00224 Pyruvate kinase, barrel domain RI02_13325 PF00365 Phosphofructokinase RI02_13330 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit RI02_13335 PF17848 Acetyl-coA carboxylase zinc finger domain RI02_13335 PF01039 Carboxyl transferase domain RI02_13340 PF03949 Malic enzyme, NAD binding domain RI02_13340 PF00390 Malic enzyme, N-terminal domain RI02_13345 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RI02_13345 PF07733 Bacterial DNA polymerase III alpha NTPase domain RI02_13345 PF02811 PHP domain RI02_13345 PF01336 OB-fold nucleic acid binding domain RI02_13345 PF14579 Helix-hairpin-helix motif RI02_13350 PF14034 Sporulation protein YtrH RI02_13365 PF01368 DHH family RI02_13365 PF02272 DHHA1 domain RI02_13370 PF14007 YtpI-like protein RI02_13380 PF00392 Bacterial regulatory proteins, gntR family RI02_13380 PF07085 DRTGG domain RI02_13380 PF00571 CBS domain RI02_13380 PF03061 Thioesterase superfamily RI02_13400 PF00206 Lyase RI02_13400 PF14698 Argininosuccinate lyase C-terminal RI02_13405 PF00764 Arginosuccinate synthase RI02_13410 PF00994 Probable molybdopterin binding domain RI02_13415 PF00871 Acetokinase family RI02_13420 PF02384 N-6 DNA Methylase RI02_13425 PF08534 Redoxin RI02_13430 PF09579 Sporulation protein YtfJ (Spore_YtfJ) RI02_13435 PF11167 Protein of unknown function (DUF2953) RI02_13440 PF06271 RDD family RI02_13445 PF01343 Peptidase family S49 RI02_13450 PF01513 ATP-NAD kinase RI02_13455 PF00271 Helicase conserved C-terminal domain RI02_13455 PF00270 DEAD/DEAH box helicase RI02_13455 PF03880 DbpA RNA binding domain RI02_13460 PF00487 Fatty acid desaturase RI02_13465 PF07730 Histidine kinase RI02_13470 PF00072 Response regulator receiver domain RI02_13470 PF00196 Bacterial regulatory proteins, luxR family RI02_13475 PF01497 Periplasmic binding protein RI02_13480 PF00486 Transcriptional regulatory protein, C terminal RI02_13480 PF00072 Response regulator receiver domain RI02_13485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RI02_13490 PF00005 ABC transporter RI02_13495 PF02687 FtsX-like permease family RI02_13500 PF01979 Amidohydrolase family RI02_13505 PF02525 Flavodoxin-like fold RI02_13520 PF01810 LysE type translocator RI02_13525 PF13193 AMP-binding enzyme C-terminal domain RI02_13525 PF00501 AMP-binding enzyme RI02_13530 PF00269 Small, acid-soluble spore proteins, alpha/beta type RI02_13535 PF02568 Thiamine biosynthesis protein (ThiI) RI02_13535 PF02926 THUMP domain RI02_13540 PF00266 Aminotransferase class-V RI02_13545 PF05525 Branched-chain amino acid transport protein RI02_13550 PF05525 Branched-chain amino acid transport protein RI02_13555 PF06160 Septation ring formation regulator, EzrA RI02_13560 PF02811 PHP domain RI02_13565 PF00440 Bacterial regulatory proteins, tetR family RI02_13570 PF13185 GAF domain RI02_13575 PF00163 Ribosomal protein S4/S9 N-terminal domain RI02_13575 PF01479 S4 domain RI02_13585 PF00857 Isochorismatase family RI02_13595 PF01674 Lipase (class 2) RI02_13600 PF03992 Antibiotic biosynthesis monooxygenase RI02_13605 PF00579 tRNA synthetases class I (W and Y) RI02_13605 PF01479 S4 domain RI02_13610 PF13193 AMP-binding enzyme C-terminal domain RI02_13610 PF00501 AMP-binding enzyme RI02_13615 PF00583 Acetyltransferase (GNAT) family RI02_13620 PF00571 CBS domain RI02_13625 PF00850 Histone deacetylase domain RI02_13630 PF00356 Bacterial regulatory proteins, lacI family RI02_13635 PF01817 Chorismate mutase type II RI02_13635 PF00793 DAHP synthetase I family RI02_13640 PF11009 Protein of unknown function (DUF2847) RI02_13645 PF12732 YtxH-like protein RI02_13650 PF06103 Bacterial protein of unknown function (DUF948) RI02_13655 PF08245 Mur ligase middle domain RI02_13655 PF01225 Mur ligase family, catalytic domain RI02_13655 PF02875 Mur ligase family, glutamate ligase domain RI02_13660 PF01580 FtsK/SpoIIIE family RI02_13660 PF09397 Ftsk gamma domain RI02_13660 PF17854 FtsK alpha domain RI02_13665 PF01588 Putative tRNA binding domain RI02_13665 PF14794 Domain of unknown function (DUF4479) RI02_13670 PF07285 Protein of unknown function (DUF1444) RI02_13675 PF00085 Thioredoxin RI02_13685 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ RI02_13690 PF05343 M42 glutamyl aminopeptidase RI02_13695 PF03413 Peptidase propeptide and YPEB domain RI02_13700 PF03949 Malic enzyme, NAD binding domain RI02_13700 PF00390 Malic enzyme, N-terminal domain RI02_13705 PF00753 Metallo-beta-lactamase superfamily RI02_13710 PF02390 Putative methyltransferase RI02_13715 PF14165 YtzH-like protein RI02_13720 PF01636 Phosphotransferase enzyme family RI02_13725 PF00781 Diacylglycerol kinase catalytic domain RI02_13740 PF00291 Pyridoxal-phosphate dependent enzyme RI02_13745 PF03575 Peptidase family S51 RI02_13750 PF01546 Peptidase family M20/M25/M40 RI02_13755 PF00860 Permease family RI02_13760 PF08220 DeoR-like helix-turn-helix domain RI02_13765 PF00849 RNA pseudouridylate synthase RI02_13765 PF01479 S4 domain RI02_13770 PF14667 Polysaccharide biosynthesis C-terminal domain RI02_13770 PF01943 Polysaccharide biosynthesis protein RI02_13785 PF02028 BCCT, betaine/carnitine/choline family transporter RI02_13790 PF03691 Uncharacterised protein family (UPF0167) RI02_13795 PF10957 Sporulation protein Cse60 RI02_13800 PF00581 Rhodanese-like domain RI02_13805 PF04854 Protein of unknown function, DUF624 RI02_13810 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RI02_13810 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RI02_13820 PF07470 Glycosyl Hydrolase Family 88 RI02_13825 PF00528 Binding-protein-dependent transport system inner membrane component RI02_13830 PF17853 GGDEF-like domain RI02_13830 PF12833 Helix-turn-helix domain RI02_13835 PF01638 HxlR-like helix-turn-helix RI02_13840 PF07690 Major Facilitator Superfamily RI02_13845 PF00248 Aldo/keto reductase family RI02_13850 PF13416 Bacterial extracellular solute-binding protein RI02_13855 PF00528 Binding-protein-dependent transport system inner membrane component RI02_13860 PF01370 NAD dependent epimerase/dehydratase family RI02_13865 PF01738 Dienelactone hydrolase family RI02_13870 PF00133 tRNA synthetases class I (I, L, M and V) RI02_13870 PF13603 Leucyl-tRNA synthetase, Domain 2 RI02_13870 PF09334 tRNA synthetases class I (M) RI02_13870 PF08264 Anticodon-binding domain of tRNA RI02_13875 PF14074 Protein of unknown function (DUF4257) RI02_13880 PF01740 STAS domain RI02_13880 PF13426 PAS domain RI02_13885 PF04791 LMBR1-like membrane protein RI02_13890 PF12704 MacB-like periplasmic core domain RI02_13890 PF02687 FtsX-like permease family RI02_13895 PF00005 ABC transporter RI02_13905 PF00005 ABC transporter RI02_13910 PF00392 Bacterial regulatory proteins, gntR family RI02_13925 PF10732 Protein of unknown function (DUF2524) RI02_13930 PF16199 Radical_SAM C-terminal domain RI02_13930 PF04055 Radical SAM superfamily RI02_13935 PF06962 Putative rRNA methylase RI02_13940 PF07070 SpoOM protein RI02_13945 PF10776 Protein of unknown function (DUF2600) RI02_13950 PF12146 Serine aminopeptidase, S33 RI02_13955 PF00132 Bacterial transferase hexapeptide (six repeats) RI02_13960 PF13537 Glutamine amidotransferase domain RI02_13960 PF00733 Asparagine synthase RI02_13965 PF02772 S-adenosylmethionine synthetase, central domain RI02_13965 PF00438 S-adenosylmethionine synthetase, N-terminal domain RI02_13965 PF02773 S-adenosylmethionine synthetase, C-terminal domain RI02_13970 PF01293 Phosphoenolpyruvate carboxykinase RI02_13975 PF10763 Protein of unknown function (DUF2584) RI02_13980 PF00326 Prolyl oligopeptidase family RI02_13985 PF01593 Flavin containing amine oxidoreductase RI02_13990 PF00535 Glycosyl transferase family 2 RI02_14010 PF00005 ABC transporter RI02_14015 PF00528 Binding-protein-dependent transport system inner membrane component RI02_14020 PF00293 NUDIX domain RI02_14025 PF02342 TerD domain RI02_14040 PF05105 Bacteriophage holin family RI02_14050 PF00210 Ferritin-like domain RI02_14060 PF13115 YtkA-like RI02_14065 PF02664 S-Ribosylhomocysteinase (LuxS) RI02_14070 PF01809 Putative membrane protein insertion efficiency factor RI02_14075 PF00484 Carbonic anhydrase RI02_14080 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment RI02_14080 PF01297 Zinc-uptake complex component A periplasmic RI02_14085 PF01197 Ribosomal protein L31 RI02_14095 PF01654 Cytochrome bd terminal oxidase subunit I RI02_14100 PF02322 Cytochrome bd terminal oxidase subunit II RI02_14105 PF07561 Domain of Unknown Function (DUF1540) RI02_14115 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RI02_14115 PF13378 Enolase C-terminal domain-like RI02_14120 PF00501 AMP-binding enzyme RI02_14120 PF13193 AMP-binding enzyme C-terminal domain RI02_14125 PF00378 Enoyl-CoA hydratase/isomerase RI02_14130 PF00561 alpha/beta hydrolase fold RI02_14135 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RI02_14135 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RI02_14135 PF16582 Middle domain of thiamine pyrophosphate RI02_14140 PF00425 chorismate binding enzyme RI02_14145 PF01040 UbiA prenyltransferase family RI02_14150 PF01258 Prokaryotic dksA/traR C4-type zinc finger RI02_14155 PF03073 TspO/MBR family RI02_14280 PF09515 Thiamine transporter protein (Thia_YuaJ) RI02_14290 PF00583 Acetyltransferase (GNAT) family RI02_14295 PF06803 Protein of unknown function (DUF1232) RI02_14300 PF01098 Cell cycle protein RI02_14305 PF01098 Cell cycle protein RI02_14310 PF15975 Flotillin RI02_14310 PF01145 SPFH domain / Band 7 family RI02_14320 PF12867 DinB superfamily RI02_14325 PF00465 Iron-containing alcohol dehydrogenase RI02_14330 PF00171 Aldehyde dehydrogenase family RI02_14350 PF01471 Putative peptidoglycan binding domain RI02_14350 PF01510 N-acetylmuramoyl-L-alanine amidase RI02_14355 PF04688 SPP1 phage holin RI02_14360 PF10960 BhlA holin family RI02_14385 PF09693 Phage uncharacterised protein (Phage_XkdX) RI02_14390 PF09636 XkdW protein RI02_14405 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) RI02_14410 PF04865 Baseplate J-like protein RI02_14415 PF10934 Protein of unknown function (DUF2634) RI02_14420 PF10844 Protein of unknown function (DUF2577) RI02_14430 PF01476 LysM domain RI02_14435 PF01464 Transglycosylase SLT domain RI02_14435 PF01464 Transglycosylase SLT domain RI02_14445 PF08890 Phage XkdN-like tail assembly chaperone protein, TAC RI02_14455 PF09393 Phage tail tube protein RI02_14460 PF17481 Phage tail sheath protein beta-sandwich domain RI02_14460 PF04984 Phage tail sheath protein subtilisin-like domain RI02_14460 PF17482 Phage tail sheath C-terminal domain RI02_14475 PF04883 Bacteriophage HK97-gp10, putative tail-component RI02_14480 PF12206 Domain of unknown function (DUF3599) RI02_14485 PF11436 Protein of unknown function (DUF3199) RI02_14490 PF05065 Phage capsid family RI02_14495 PF14550 Putative phage serine protease XkdF RI02_14500 PF04860 Phage portal protein RI02_14505 PF04466 Phage terminase large subunit RI02_14505 PF17288 Terminase RNAseH like domain RI02_14510 PF10668 Phage terminase small subunit RI02_14515 PF08281 Sigma-70, region 4 RI02_14520 PF17356 Phage-like element PBSX protein XtrA RI02_14525 PF05866 Endodeoxyribonuclease RusA RI02_14540 PF01381 Helix-turn-helix RI02_14550 PF06968 Biotin and Thiamin Synthesis associated domain RI02_14550 PF04055 Radical SAM superfamily RI02_14560 PF02673 Bacitracin resistance protein BacA RI02_14565 PF01594 AI-2E family transporter RI02_14575 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RI02_14575 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RI02_14580 PF01965 DJ-1/PfpI family RI02_14585 PF00672 HAMP domain RI02_14585 PF02743 Cache domain RI02_14585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RI02_14590 PF00672 HAMP domain RI02_14590 PF02743 Cache domain RI02_14590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RI02_14595 PF02743 Cache domain RI02_14595 PF00672 HAMP domain RI02_14595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RI02_14600 PF02743 Cache domain RI02_14600 PF00672 HAMP domain RI02_14600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RI02_14615 PF03060 Nitronate monooxygenase RI02_14620 PF01894 Uncharacterised protein family UPF0047 RI02_14625 PF00571 CBS domain RI02_14625 PF03471 Transporter associated domain RI02_14625 PF01595 Cyclin M transmembrane N-terminal domain RI02_14630 PF04298 Putative neutral zinc metallopeptidase RI02_14640 PF07885 Ion channel RI02_14640 PF02254 TrkA-N domain RI02_14645 PF08868 YugN-like family RI02_14655 PF00342 Phosphoglucose isomerase RI02_14660 PF00465 Iron-containing alcohol dehydrogenase RI02_14665 PF00465 Iron-containing alcohol dehydrogenase RI02_14670 PF04070 Domain of unknown function (DUF378) RI02_14675 PF00575 S1 RNA binding domain RI02_14680 PF00155 Aminotransferase class I and II RI02_14685 PF01037 Lrp/AsnC ligand binding domain RI02_14690 PF00561 alpha/beta hydrolase fold RI02_14690 PF08386 TAP-like protein RI02_14695 PF08958 Domain of unknown function (DUF1871) RI02_14700 PF00155 Aminotransferase class I and II RI02_14705 PF00512 His Kinase A (phospho-acceptor) domain RI02_14705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RI02_14710 PF08810 Kinase associated protein B RI02_14715 PF00929 Exonuclease RI02_14720 PF07690 Major Facilitator Superfamily RI02_14725 PF00905 Penicillin binding protein transpeptidase domain RI02_14725 PF00912 Transglycosylase RI02_14730 PF04134 Protein of unknown function, DUF393 RI02_14735 PF17328 Family of unknown function (DUF5366) RI02_14740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RI02_14740 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain RI02_14740 PF17203 Single cache domain 3 RI02_14740 PF00989 PAS fold RI02_14745 PF00072 Response regulator receiver domain RI02_14750 PF02608 ABC transporter substrate-binding protein PnrA-like RI02_14755 PF00005 ABC transporter RI02_14760 PF02653 Branched-chain amino acid transport system / permease component RI02_14765 PF02653 Branched-chain amino acid transport system / permease component RI02_14770 PF03390 2-hydroxycarboxylate transporter family RI02_14780 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RI02_14780 PF13244 Domain of unknown function (DUF4040) RI02_14780 PF00361 Proton-conducting membrane transporter RI02_14785 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter RI02_14790 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RI02_14795 PF00361 Proton-conducting membrane transporter RI02_14800 PF01899 Na+/H+ ion antiporter subunit RI02_14805 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) RI02_14810 PF03334 Na+/H+ antiporter subunit RI02_14815 PF03061 Thioesterase superfamily RI02_14820 PF00196 Bacterial regulatory proteins, luxR family RI02_14820 PF00072 Response regulator receiver domain RI02_14825 PF07730 Histidine kinase RI02_14825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RI02_14835 PF00348 Polyprenyl synthetase RI02_14840 PF08181 DegQ (SacQ) family RI02_14850 PF08668 HDOD domain RI02_14850 PF00563 EAL domain RI02_14855 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain RI02_14855 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain RI02_14855 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family RI02_14860 PF00857 Isochorismatase family RI02_14865 PF07997 Protein of unknown function (DUF1694) RI02_14870 PF14166 YueH-like protein RI02_14875 PF10676 Spore germination protein gerPA/gerPF RI02_14880 PF10676 Spore germination protein gerPA/gerPF RI02_14885 PF01594 AI-2E family transporter RI02_14890 PF10842 Protein of unknown function (DUF2642) RI02_14900 PF01966 HD domain RI02_14905 PF00106 short chain dehydrogenase RI02_14910 PF17355 Family of unknown function (DUF5383) RI02_14920 PF12538 DNA transporter RI02_14920 PF01580 FtsK/SpoIIIE family RI02_14925 PF10140 WXG100 protein secretion system (Wss), protein YukC RI02_14930 PF08817 WXG100 protein secretion system (Wss), protein YukD RI02_14935 PF06013 Proteins of 100 residues with WXG RI02_14940 PF06018 CodY GAF-like domain RI02_14940 PF17853 GGDEF-like domain RI02_14940 PF13556 PucR C-terminal helix-turn-helix domain RI02_14945 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RI02_14945 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RI02_14950 PF02632 BioY family RI02_14955 PF03553 Na+/H+ antiporter family RI02_14955 PF13726 Na+-H+ antiporter family RI02_14960 PF00883 Cytosol aminopeptidase family, catalytic domain RI02_14960 PF02789 Cytosol aminopeptidase family, N-terminal domain RI02_14965 PF02681 Divergent PAP2 family RI02_14970 PF06725 3D domain RI02_14975 PF14068 Putative membrane protein RI02_14980 PF07992 Pyridine nucleotide-disulphide oxidoreductase RI02_14985 PF07992 Pyridine nucleotide-disulphide oxidoreductase RI02_15000 PF13411 MerR HTH family regulatory protein RI02_15000 PF07739 TipAS antibiotic-recognition domain RI02_15005 PF10026 Predicted Zn-dependent protease (DUF2268) RI02_15010 PF01521 Iron-sulphur cluster biosynthesis RI02_15015 PF01678 Diaminopimelate epimerase RI02_15020 PF07293 Protein of unknown function (DUF1450) RI02_15025 PF07992 Pyridine nucleotide-disulphide oxidoreductase RI02_15035 PF07315 Protein of unknown function (DUF1462) RI02_15040 PF01106 NifU-like domain RI02_15045 PF07676 WD40-like Beta Propeller Repeat RI02_15045 PF00326 Prolyl oligopeptidase family RI02_15050 PF08544 GHMP kinases C terminal RI02_15050 PF00288 GHMP kinases N terminal domain RI02_15055 PF00291 Pyridoxal-phosphate dependent enzyme RI02_15060 PF00742 Homoserine dehydrogenase RI02_15060 PF01842 ACT domain RI02_15060 PF03447 Homoserine dehydrogenase, NAD binding domain RI02_15065 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RI02_15065 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RI02_15075 PF04608 Phosphatidylglycerophosphatase A RI02_15095 PF13344 Haloacid dehalogenase-like hydrolase RI02_15100 PF01934 Protein of unknown function DUF86 RI02_15105 PF06265 Protein of unknown function (DUF1027) RI02_15110 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) RI02_15115 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family RI02_15115 PF04055 Radical SAM superfamily RI02_15120 PF01551 Peptidase family M23 RI02_15130 PF10903 Protein of unknown function (DUF2691) RI02_15135 PF09560 Sporulation protein YunB (Spo_YunB) RI02_15140 PF08827 Domain of unknown function (DUF1805) RI02_15145 PF02872 5'-nucleotidase, C-terminal domain RI02_15150 PF01904 Protein of unknown function DUF72 RI02_15155 PF13556 PucR C-terminal helix-turn-helix domain RI02_15155 PF07905 Purine catabolism regulatory protein-like family RI02_15155 PF17853 GGDEF-like domain RI02_15160 PF00190 Cupin RI02_15165 PF07690 Major Facilitator Superfamily RI02_15170 PF00266 Aminotransferase class-V RI02_15175 PF04231 Endonuclease I RI02_15185 PF01032 FecCD transport family RI02_15190 PF01032 FecCD transport family RI02_15195 PF01497 Periplasmic binding protein RI02_15205 PF07859 alpha/beta hydrolase fold RI02_15210 PF06146 Phosphate-starvation-inducible E RI02_15215 PF00512 His Kinase A (phospho-acceptor) domain RI02_15220 PF00486 Transcriptional regulatory protein, C terminal RI02_15220 PF00072 Response regulator receiver domain RI02_15225 PF04235 Protein of unknown function (DUF418) RI02_15235 PF02525 Flavodoxin-like fold RI02_15240 PF08338 Domain of unknown function (DUF1731) RI02_15240 PF01370 NAD dependent epimerase/dehydratase family RI02_15245 PF00440 Bacterial regulatory proteins, tetR family RI02_15245 PF18665 Tetracyclin repressor-like, C-terminal domain RI02_15260 PF01458 Uncharacterized protein family (UPF0051) RI02_15265 PF01592 NifU-like N terminal domain RI02_15270 PF00266 Aminotransferase class-V RI02_15275 PF01458 Uncharacterized protein family (UPF0051) RI02_15280 PF00005 ABC transporter RI02_15285 PF02627 Carboxymuconolactone decarboxylase family RI02_15290 PF03180 NLPA lipoprotein RI02_15295 PF00528 Binding-protein-dependent transport system inner membrane component RI02_15300 PF00005 ABC transporter RI02_15300 PF09383 NIL domain RI02_15305 PF02036 SCP-2 sterol transfer family RI02_15310 PF00085 Thioredoxin RI02_15315 PF01751 Toprim domain RI02_15320 PF10830 Protein of unknown function (DUF2553) RI02_15325 PF01597 Glycine cleavage H-protein RI02_15330 PF03960 ArsC family RI02_15335 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RI02_15335 PF02770 Acyl-CoA dehydrogenase, middle domain RI02_15335 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RI02_15340 PF00108 Thiolase, N-terminal domain RI02_15340 PF02803 Thiolase, C-terminal domain RI02_15345 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RI02_15345 PF00378 Enoyl-CoA hydratase/isomerase RI02_15345 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RI02_15350 PF14115 YuzL-like protein RI02_15360 PF07875 Coat F domain RI02_15365 PF10835 Protein of unknown function (DUF2573) RI02_15370 PF00005 ABC transporter RI02_15380 PF00106 short chain dehydrogenase RI02_15390 PF13180 PDZ domain RI02_15395 PF00072 Response regulator receiver domain RI02_15395 PF00486 Transcriptional regulatory protein, C terminal RI02_15400 PF00672 HAMP domain RI02_15400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RI02_15400 PF00512 His Kinase A (phospho-acceptor) domain RI02_15405 PF00440 Bacterial regulatory proteins, tetR family RI02_15410 PF10415 Fumarase C C-terminus RI02_15410 PF00206 Lyase RI02_15415 PF13113 Protein of unknown function (DUF3970) RI02_15420 PF03323 Bacillus/Clostridium GerA spore germination protein RI02_15425 PF03845 Spore germination protein RI02_15430 PF05504 Spore germination B3/ GerAC like, C-terminal RI02_15440 PF00196 Bacterial regulatory proteins, luxR family RI02_15440 PF00072 Response regulator receiver domain RI02_15445 PF00672 HAMP domain RI02_15445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RI02_15445 PF07730 Histidine kinase RI02_15450 PF09922 Cell wall-active antibiotics response 4TMS YvqF RI02_15460 PF04012 PspA/IM30 family RI02_15470 PF01923 Cobalamin adenosyltransferase RI02_15480 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RI02_15485 PF07005 Sugar-binding N-terminal domain RI02_15485 PF17042 Nucleotide-binding C-terminal domain RI02_15490 PF02954 Bacterial regulatory protein, Fis family RI02_15490 PF00158 Sigma-54 interaction domain RI02_15490 PF00072 Response regulator receiver domain RI02_15505 PF00465 Iron-containing alcohol dehydrogenase RI02_15510 PF00701 Dihydrodipicolinate synthetase family RI02_15515 PF00005 ABC transporter RI02_15520 PF01032 FecCD transport family RI02_15525 PF01497 Periplasmic binding protein RI02_15530 PF00295 Glycosyl hydrolases family 28 RI02_15535 PF08666 SAF domain RI02_15535 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus RI02_15540 PF01232 Mannitol dehydrogenase Rossmann domain RI02_15540 PF08125 Mannitol dehydrogenase C-terminal domain RI02_15545 PF00356 Bacterial regulatory proteins, lacI family RI02_15550 PF02614 Glucuronate isomerase RI02_15555 PF00512 His Kinase A (phospho-acceptor) domain RI02_15555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RI02_15560 PF00072 Response regulator receiver domain RI02_15560 PF00486 Transcriptional regulatory protein, C terminal RI02_15565 PF00005 ABC transporter RI02_15570 PF01032 FecCD transport family RI02_15575 PF01032 FecCD transport family RI02_15580 PF01497 Periplasmic binding protein RI02_15585 PF13520 Amino acid permease RI02_15595 PF09575 Small spore protein J (Spore_SspJ) RI02_15605 PF04307 LexA-binding, inner membrane-associated putative hydrolase RI02_15610 PF00884 Sulfatase RI02_15620 PF00528 Binding-protein-dependent transport system inner membrane component RI02_15625 PF00248 Aldo/keto reductase family RI02_15630 PF00480 ROK family RI02_15635 PF00999 Sodium/hydrogen exchanger family RI02_15640 PF03458 UPF0126 domain RI02_15645 PF02600 Disulfide bond formation protein DsbB RI02_15650 PF13462 Thioredoxin RI02_15655 PF00403 Heavy-metal-associated domain RI02_15660 PF00005 ABC transporter RI02_15665 PF00950 ABC 3 transport family RI02_15670 PF01297 Zinc-uptake complex component A periplasmic RI02_15680 PF00440 Bacterial regulatory proteins, tetR family RI02_15680 PF13977 BetI-type transcriptional repressor, C-terminal RI02_15685 PF08664 YcbB domain RI02_15685 PF00072 Response regulator receiver domain RI02_15690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RI02_15695 PF00206 Lyase RI02_15695 PF10415 Fumarase C C-terminus RI02_15700 PF00375 Sodium:dicarboxylate symporter family RI02_15710 PF00403 Heavy-metal-associated domain RI02_15715 PF00403 Heavy-metal-associated domain RI02_15720 PF02583 Metal-sensitive transcriptional repressor RI02_15730 PF00072 Response regulator receiver domain RI02_15730 PF00990 Diguanylate cyclase, GGDEF domain RI02_15755 PF01668 SmpB protein RI02_15760 PF00575 S1 RNA binding domain RI02_15760 PF08206 Ribonuclease B OB domain RI02_15760 PF17876 Cold shock domain RI02_15760 PF00773 RNB domain RI02_15765 PF12146 Serine aminopeptidase, S33 RI02_15770 PF03840 Preprotein translocase SecG subunit RI02_15775 PF18277 AbrB C-terminal domain RI02_15775 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin RI02_15780 PF01381 Helix-turn-helix RI02_15795 PF01638 HxlR-like helix-turn-helix RI02_15800 PF00528 Binding-protein-dependent transport system inner membrane component RI02_15805 PF04069 Substrate binding domain of ABC-type glycine betaine transport system RI02_15810 PF00528 Binding-protein-dependent transport system inner membrane component RI02_15815 PF00005 ABC transporter RI02_15815 PF00571 CBS domain RI02_15820 PF12802 MarR family RI02_15825 PF01914 MarC family integral membrane protein RI02_15835 PF00583 Acetyltransferase (GNAT) family RI02_15855 PF00005 ABC transporter RI02_15865 PF03952 Enolase, N-terminal domain RI02_15865 PF00113 Enolase, C-terminal TIM barrel domain RI02_15870 PF06415 BPG-independent PGAM N-terminus (iPGM_N) RI02_15870 PF01676 Metalloenzyme superfamily RI02_15875 PF00121 Triosephosphate isomerase RI02_15880 PF00162 Phosphoglycerate kinase RI02_15885 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RI02_15885 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RI02_15890 PF04198 Putative sugar-binding domain RI02_15895 PF00324 Amino acid permease RI02_15900 PF00202 Aminotransferase class-III RI02_15905 PF00158 Sigma-54 interaction domain RI02_15905 PF13426 PAS domain RI02_15905 PF02954 Bacterial regulatory protein, Fis family RI02_15910 PF00392 Bacterial regulatory proteins, gntR family RI02_15910 PF07729 FCD domain RI02_15915 PF00309 Sigma-54 factor, Activator interacting domain (AID) RI02_15915 PF04552 Sigma-54, DNA binding domain RI02_15915 PF04963 Sigma-54 factor, core binding domain RI02_15920 PF09628 YvfG protein RI02_15925 PF01554 MatE RI02_15930 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RI02_15930 PF00005 ABC transporter RI02_15935 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RI02_15935 PF00005 ABC transporter RI02_15940 PF00528 Binding-protein-dependent transport system inner membrane component RI02_15945 PF00528 Binding-protein-dependent transport system inner membrane component RI02_15950 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RI02_15955 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RI02_15960 PF00132 Bacterial transferase hexapeptide (six repeats) RI02_15960 PF17836 PglD N-terminal domain RI02_15965 PF02397 Bacterial sugar transferase RI02_15970 PF14667 Polysaccharide biosynthesis C-terminal domain RI02_15970 PF01943 Polysaccharide biosynthesis protein RI02_15975 PF04230 Polysaccharide pyruvyl transferase RI02_15980 PF00535 Glycosyl transferase family 2 RI02_15990 PF13439 Glycosyltransferase Family 4 RI02_15990 PF00534 Glycosyl transferases group 1 RI02_15995 PF00535 Glycosyl transferase family 2 RI02_16000 PF13439 Glycosyltransferase Family 4 RI02_16000 PF00534 Glycosyl transferases group 1 RI02_16005 PF02719 Polysaccharide biosynthesis protein RI02_16010 PF13614 AAA domain RI02_16015 PF02706 Chain length determinant protein RI02_16020 PF08671 Anti-repressor SinI RI02_16020 PF01381 Helix-turn-helix RI02_16030 PF01497 Periplasmic binding protein RI02_16035 PF01032 FecCD transport family RI02_16040 PF01032 FecCD transport family RI02_16045 PF11738 Protein of unknown function (DUF3298) RI02_16045 PF01522 Polysaccharide deacetylase RI02_16045 PF13739 Deacetylase PdaC RI02_16050 PF12848 ABC transporter RI02_16050 PF00005 ABC transporter RI02_16055 PF00005 ABC transporter RI02_16055 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RI02_16060 PF00005 ABC transporter RI02_16065 PF00528 Binding-protein-dependent transport system inner membrane component RI02_16065 PF12911 N-terminal TM domain of oligopeptide transport permease C RI02_16070 PF00528 Binding-protein-dependent transport system inner membrane component RI02_16075 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RI02_16085 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase RI02_16105 PF00574 Clp protease RI02_16110 PF03641 Possible lysine decarboxylase RI02_16115 PF03819 MazG nucleotide pyrophosphohydrolase domain RI02_16120 PF01740 STAS domain RI02_16120 PF00916 Sulfate permease family RI02_16125 PF00484 Carbonic anhydrase RI02_16130 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RI02_16130 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RI02_16135 PF00545 ribonuclease RI02_16145 PF00797 N-acetyltransferase RI02_16150 PF00381 PTS HPr component phosphorylation site RI02_16155 PF02650 WhiA C-terminal HTH domain RI02_16155 PF10298 WhiA N-terminal LAGLIDADG-like domain RI02_16155 PF14527 WhiA LAGLIDADG-like domain RI02_16160 PF01933 Uncharacterised protein family UPF0052 RI02_16165 PF03668 P-loop ATPase protein family RI02_16170 PF00293 NUDIX domain RI02_16175 PF07992 Pyridine nucleotide-disulphide oxidoreductase RI02_16180 PF00877 NlpC/P60 family RI02_16190 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase RI02_16190 PF01502 Phosphoribosyl-AMP cyclohydrolase RI02_16195 PF00977 Histidine biosynthesis protein RI02_16200 PF00977 Histidine biosynthesis protein RI02_16205 PF00117 Glutamine amidotransferase class-I RI02_16210 PF00475 Imidazoleglycerol-phosphate dehydratase RI02_16215 PF00815 Histidinol dehydrogenase RI02_16220 PF01634 ATP phosphoribosyltransferase RI02_16225 PF13393 Histidyl-tRNA synthetase RI02_16230 PF13529 Peptidase_C39 like family RI02_16240 PF13460 NAD(P)H-binding RI02_16245 PF02082 Transcriptional regulator RI02_16250 PF14602 Hexapeptide repeat of succinyl-transferase RI02_16255 PF13419 Haloacid dehalogenase-like hydrolase RI02_16260 PF07670 Nucleoside recognition RI02_16265 PF01790 Prolipoprotein diacylglyceryl transferase RI02_16270 PF02603 HPr Serine kinase N terminus RI02_16270 PF07475 HPr Serine kinase C-terminal domain RI02_16275 PF01979 Amidohydrolase family RI02_16280 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase RI02_16285 PF07702 UTRA domain RI02_16285 PF00392 Bacterial regulatory proteins, gntR family RI02_16290 PF00149 Calcineurin-like phosphoesterase RI02_16295 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV RI02_16300 PF04024 PspC domain RI02_16305 PF13349 Putative adhesin RI02_16320 PF00005 ABC transporter RI02_16320 PF17760 UvrA interaction domain RI02_16320 PF17755 UvrA DNA-binding domain RI02_16325 PF04851 Type III restriction enzyme, res subunit RI02_16325 PF02151 UvrB/uvrC motif RI02_16325 PF00271 Helicase conserved C-terminal domain RI02_16325 PF12344 Ultra-violet resistance protein B RI02_16325 PF17757 UvrB interaction domain RI02_16330 PF09964 Uncharacterized protein conserved in bacteria (DUF2198) RI02_16335 PF00391 PEP-utilising enzyme, mobile domain RI02_16335 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RI02_16340 PF00440 Bacterial regulatory proteins, tetR family RI02_16345 PF07690 Major Facilitator Superfamily RI02_16355 PF00072 Response regulator receiver domain RI02_16355 PF00486 Transcriptional regulatory protein, C terminal RI02_16360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RI02_16360 PF00989 PAS fold RI02_16360 PF18698 Histidine kinase sensor domain RI02_16360 PF00672 HAMP domain RI02_16360 PF00512 His Kinase A (phospho-acceptor) domain RI02_16365 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase RI02_16370 PF00535 Glycosyl transferase family 2 RI02_16375 PF00324 Amino acid permease RI02_16380 PF00881 Nitroreductase family RI02_16385 PF01638 HxlR-like helix-turn-helix RI02_16390 PF17820 PDZ domain RI02_16395 PF17423 Swarming motility protein RI02_16400 PF01471 Putative peptidoglycan binding domain RI02_16400 PF03572 Peptidase family S41 RI02_16400 PF17820 PDZ domain RI02_16405 PF01925 Sulfite exporter TauE/SafE RI02_16410 PF00877 NlpC/P60 family RI02_16415 PF18075 FtsX extracellular domain RI02_16415 PF02687 FtsX-like permease family RI02_16420 PF00005 ABC transporter RI02_16425 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RI02_16430 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 RI02_16430 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) RI02_16450 PF02810 SEC-C motif RI02_16450 PF07517 SecA DEAD-like domain RI02_16450 PF01043 SecA preprotein cross-linking domain RI02_16450 PF07516 SecA Wing and Scaffold domain RI02_16455 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus RI02_16455 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RI02_16460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RI02_16460 PF00672 HAMP domain RI02_16460 PF02743 Cache domain RI02_16475 PF02561 Flagellar protein FliS RI02_16480 PF07195 Flagellar hook-associated protein 2 C-terminus RI02_16480 PF02465 Flagellar hook-associated protein 2 N-terminus RI02_16480 PF07196 Flagellin hook IN motif RI02_16485 PF03646 FlaG protein RI02_16490 PF02599 Global regulator protein family RI02_16495 PF02623 FliW protein RI02_16505 PF00669 Bacterial flagellin N-terminal helical region RI02_16505 PF00700 Bacterial flagellin C-terminal helical region RI02_16510 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RI02_16510 PF00460 Flagella basal body rod protein RI02_16515 PF05130 FlgN protein RI02_16535 PF10719 Late competence development protein ComFB RI02_16540 PF00271 Helicase conserved C-terminal domain RI02_16540 PF04851 Type III restriction enzyme, res subunit RI02_16545 PF02645 Uncharacterised protein, DegV family COG1307 RI02_16550 PF00072 Response regulator receiver domain RI02_16550 PF00196 Bacterial regulatory proteins, luxR family RI02_16555 PF07730 Histidine kinase RI02_16555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RI02_16555 PF05384 Sensor protein DegS RI02_16560 PF09186 Domain of unknown function (DUF1949) RI02_16560 PF01205 Uncharacterized protein family UPF0029 RI02_16565 PF03816 Cell envelope-related transcriptional attenuator domain RI02_16570 PF00953 Glycosyl transferase family 4 RI02_16580 PF00535 Glycosyl transferase family 2 RI02_16585 PF02706 Chain length determinant protein RI02_16590 PF04932 O-Antigen ligase RI02_16595 PF16363 GDP-mannose 4,6 dehydratase RI02_16600 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RI02_16600 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RI02_16600 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RI02_16605 PF00534 Glycosyl transferases group 1 RI02_16605 PF13439 Glycosyltransferase Family 4 RI02_16610 PF01943 Polysaccharide biosynthesis protein RI02_16610 PF14667 Polysaccharide biosynthesis C-terminal domain RI02_16615 PF02397 Bacterial sugar transferase RI02_16625 PF04122 Putative cell wall binding repeat 2 RI02_16625 PF01520 N-acetylmuramoyl-L-alanine amidase RI02_16630 PF01520 N-acetylmuramoyl-L-alanine amidase RI02_16630 PF04122 Putative cell wall binding repeat 2 RI02_16635 PF04122 Putative cell wall binding repeat 2 RI02_16635 PF08486 Stage II sporulation protein RI02_16645 PF03816 Cell envelope-related transcriptional attenuator domain RI02_16650 PF02350 UDP-N-acetylglucosamine 2-epimerase RI02_16655 PF00483 Nucleotidyl transferase RI02_16660 PF00005 ABC transporter RI02_16665 PF01061 ABC-2 type transporter RI02_16670 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase RI02_16670 PF00535 Glycosyl transferase family 2 RI02_16675 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase RI02_16685 PF01467 Cytidylyltransferase-like RI02_16690 PF03808 Glycosyl transferase WecB/TagA/CpsF family RI02_16695 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase RI02_16700 PF05036 Sporulation related domain RI02_16700 PF08239 Bacterial SH3 domain RI02_16700 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RI02_16705 PF01238 Phosphomannose isomerase type I RI02_16710 PF00528 Binding-protein-dependent transport system inner membrane component RI02_16715 PF00528 Binding-protein-dependent transport system inner membrane component RI02_16720 PF01547 Bacterial extracellular solute-binding protein RI02_16725 PF00196 Bacterial regulatory proteins, luxR family RI02_16725 PF00072 Response regulator receiver domain RI02_16730 PF00672 HAMP domain RI02_16730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RI02_16730 PF06580 Histidine kinase RI02_16730 PF02743 Cache domain RI02_16740 PF00583 Acetyltransferase (GNAT) family RI02_16745 PF01081 KDPG and KHG aldolase RI02_16750 PF00294 pfkB family carbohydrate kinase RI02_16755 PF00356 Bacterial regulatory proteins, lacI family RI02_16760 PF04962 KduI/IolB family RI02_16770 PF03323 Bacillus/Clostridium GerA spore germination protein RI02_16775 PF03845 Spore germination protein RI02_16780 PF05504 Spore germination B3/ GerAC like, C-terminal RI02_16785 PF00534 Glycosyl transferases group 1 RI02_16785 PF00535 Glycosyl transferase family 2 RI02_16790 PF00083 Sugar (and other) transporter RI02_16795 PF03816 Cell envelope-related transcriptional attenuator domain RI02_16805 PF00877 NlpC/P60 family RI02_16810 PF09587 Bacterial capsule synthesis protein PGA_cap RI02_16815 PF14102 Capsule biosynthesis CapC RI02_16820 PF08245 Mur ligase middle domain RI02_16825 PF03323 Bacillus/Clostridium GerA spore germination protein RI02_16835 PF05504 Spore germination B3/ GerAC like, C-terminal RI02_16840 PF00356 Bacterial regulatory proteins, lacI family RI02_16845 PF00294 pfkB family carbohydrate kinase RI02_16850 PF05025 RbsD / FucU transport protein family RI02_16855 PF00005 ABC transporter RI02_16860 PF02653 Branched-chain amino acid transport system / permease component RI02_16865 PF13407 Periplasmic binding protein domain RI02_16870 PF01613 Flavin reductase like domain RI02_16875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RI02_16875 PF03466 LysR substrate binding domain RI02_16880 PF00205 Thiamine pyrophosphate enzyme, central domain RI02_16880 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RI02_16880 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RI02_16885 PF03306 Alpha-acetolactate decarboxylase RI02_16890 PF13404 AsnC-type helix-turn-helix domain RI02_16890 PF01037 Lrp/AsnC ligand binding domain RI02_16895 PF02417 Chromate transporter RI02_16900 PF02417 Chromate transporter RI02_16905 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RI02_16905 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RI02_16905 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RI02_16910 PF04434 SWIM zinc finger RI02_16915 PF12419 SNF2 Helicase protein RI02_16915 PF00176 SNF2 family N-terminal domain RI02_16915 PF00271 Helicase conserved C-terminal domain RI02_16920 PF01740 STAS domain RI02_16920 PF13426 PAS domain RI02_16935 PF14183 YwpF-like protein RI02_16940 PF01741 Large-conductance mechanosensitive channel, MscL RI02_16945 PF07977 FabA-like domain RI02_16950 PF18801 response regulator aspartate phosphatase H, N terminal RI02_16955 PF00460 Flagella basal body rod protein RI02_16955 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RI02_16960 PF00460 Flagella basal body rod protein RI02_16960 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RI02_16970 PF12116 Stage III sporulation protein D RI02_16975 PF01047 MarR family RI02_16980 PF07690 Major Facilitator Superfamily RI02_16985 PF01569 PAP2 superfamily RI02_16990 PF07690 Major Facilitator Superfamily RI02_16995 PF00497 Bacterial extracellular solute-binding proteins, family 3 RI02_17000 PF00528 Binding-protein-dependent transport system inner membrane component RI02_17005 PF00005 ABC transporter RI02_17010 PF00909 Ammonium Transporter Family RI02_17015 PF00543 Nitrogen regulatory protein P-II RI02_17020 PF01551 Peptidase family M23 RI02_17025 PF00583 Acetyltransferase (GNAT) family RI02_17045 PF00005 ABC transporter RI02_17070 PF00471 Ribosomal protein L33 RI02_17075 PF07683 Cobalamin synthesis protein cobW C-terminal domain RI02_17075 PF02492 CobW/HypB/UreG, nucleotide-binding domain RI02_17080 PF00253 Ribosomal protein S14p/S29e RI02_17085 PF06463 Molybdenum Cofactor Synthesis C RI02_17085 PF04055 Radical SAM superfamily RI02_17090 PF02634 FdhD/NarQ family RI02_17095 PF07690 Major Facilitator Superfamily RI02_17100 PF01568 Molydopterin dinucleotide binding domain RI02_17100 PF18364 Molybdopterin oxidoreductase N-terminal domain RI02_17100 PF00384 Molybdopterin oxidoreductase RI02_17105 PF00092 von Willebrand factor type A domain RI02_17110 PF00092 von Willebrand factor type A domain RI02_17115 PF08486 Stage II sporulation protein RI02_17120 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RI02_17125 PF08680 TATA-box binding RI02_17130 PF06612 Protein of unknown function (DUF1146) RI02_17140 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain RI02_17140 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain RI02_17145 PF02874 ATP synthase alpha/beta family, beta-barrel domain RI02_17145 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RI02_17150 PF00231 ATP synthase RI02_17155 PF02874 ATP synthase alpha/beta family, beta-barrel domain RI02_17155 PF00306 ATP synthase alpha/beta chain, C terminal domain RI02_17155 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RI02_17160 PF00213 ATP synthase delta (OSCP) subunit RI02_17165 PF00430 ATP synthase B/B' CF(0) RI02_17170 PF00137 ATP synthase subunit C RI02_17175 PF00119 ATP synthase A chain RI02_17180 PF03899 ATP synthase I chain RI02_17190 PF00464 Serine hydroxymethyltransferase RI02_17195 PF04260 Protein of unknown function (DUF436) RI02_17200 PF02502 Ribose/Galactose Isomerase RI02_17205 PF01451 Low molecular weight phosphotyrosine protein phosphatase RI02_17210 PF02659 Putative manganese efflux pump RI02_17215 PF03481 Putative GTP-binding controlling metal-binding RI02_17215 PF01300 Telomere recombination RI02_17225 PF09551 Stage II sporulation protein R (spore_II_R) RI02_17235 PF05175 Methyltransferase small domain RI02_17235 PF17827 PrmC N-terminal domain RI02_17240 PF00472 RF-1 domain RI02_17240 PF03462 PCRF domain RI02_17245 PF13411 MerR HTH family regulatory protein RI02_17250 PF03547 Membrane transport protein RI02_17255 PF00390 Malic enzyme, N-terminal domain RI02_17255 PF03949 Malic enzyme, NAD binding domain RI02_17260 PF00265 Thymidine kinase RI02_17265 PF01197 Ribosomal protein L31 RI02_17270 PF07498 Rho termination factor, N-terminal domain RI02_17270 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RI02_17270 PF07497 Rho termination factor, RNA-binding domain RI02_17275 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded RI02_17280 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RI02_17285 PF00923 Transaldolase/Fructose-6-phosphate aldolase RI02_17290 PF01116 Fructose-bisphosphate aldolase class-II RI02_17295 PF00072 Response regulator receiver domain RI02_17300 PF10740 Domain of unknown function (DUF2529) RI02_17305 PF06418 CTP synthase N-terminus RI02_17305 PF00117 Glutamine amidotransferase class-I RI02_17310 PF05066 HB1, ASXL, restriction endonuclease HTH domain RI02_17325 PF02770 Acyl-CoA dehydrogenase, middle domain RI02_17325 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RI02_17325 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RI02_17330 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RI02_17330 PF02770 Acyl-CoA dehydrogenase, middle domain RI02_17330 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RI02_17335 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RI02_17335 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RI02_17340 PF02803 Thiolase, C-terminal domain RI02_17340 PF00108 Thiolase, N-terminal domain RI02_17345 PF02754 Cysteine-rich domain RI02_17345 PF13183 4Fe-4S dicluster domain RI02_17350 PF13091 PLD-like domain RI02_17355 PF03851 UV-endonuclease UvdE RI02_17365 PF17676 LD-carboxypeptidase C-terminal domain RI02_17365 PF02016 LD-carboxypeptidase N-terminal domain RI02_17375 PF00005 ABC transporter RI02_17375 PF00664 ABC transporter transmembrane region RI02_17380 PF13396 Phospholipase_D-nuclease N-terminal RI02_17380 PF13091 PLD-like domain RI02_17385 PF17676 LD-carboxypeptidase C-terminal domain RI02_17385 PF02016 LD-carboxypeptidase N-terminal domain RI02_17390 PF03485 Arginyl tRNA synthetase N terminal domain RI02_17390 PF05746 DALR anticodon binding domain RI02_17390 PF00750 tRNA synthetases class I (R) RI02_17395 PF09148 Domain of unknown function (DUF1934) RI02_17405 PF00491 Arginase family RI02_17410 PF17284 Spermidine synthase tetramerisation domain RI02_17415 PF00905 Penicillin binding protein transpeptidase domain RI02_17415 PF00912 Transglycosylase RI02_17420 PF08741 YwhD family RI02_17425 PF02163 Peptidase family M50 RI02_17430 PF01361 Tautomerase enzyme RI02_17440 PF00296 Luciferase-like monooxygenase RI02_17445 PF03466 LysR substrate binding domain RI02_17445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RI02_17450 PF03358 NADPH-dependent FMN reductase RI02_17455 PF00296 Luciferase-like monooxygenase RI02_17460 PF00462 Glutaredoxin RI02_17465 PF00583 Acetyltransferase (GNAT) family RI02_17470 PF00528 Binding-protein-dependent transport system inner membrane component RI02_17480 PF00528 Binding-protein-dependent transport system inner membrane component RI02_17485 PF00005 ABC transporter RI02_17495 PF01966 HD domain RI02_17500 PF07293 Protein of unknown function (DUF1450) RI02_17515 PF07238 PilZ domain RI02_17515 PF00535 Glycosyl transferase family 2 RI02_17525 PF03099 Biotin/lipoate A/B protein ligase family RI02_17550 PF04740 LXG domain of WXG superfamily RI02_17550 PF14449 Pre-toxin TG RI02_17580 PF03737 Aldolase/RraA RI02_17590 PF01515 Phosphate acetyl/butaryl transferase RI02_17595 PF06778 Chlorite dismutase RI02_17600 PF07690 Major Facilitator Superfamily RI02_17605 PF01037 Lrp/AsnC ligand binding domain RI02_17610 PF07690 Major Facilitator Superfamily RI02_17620 PF07883 Cupin domain RI02_17635 PF00155 Aminotransferase class I and II RI02_17645 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase RI02_17650 PF04321 RmlD substrate binding domain RI02_17655 PF16363 GDP-mannose 4,6 dehydratase RI02_17660 PF00483 Nucleotidyl transferase RI02_17665 PF04101 Glycosyltransferase family 28 C-terminal domain RI02_17670 PF02348 Cytidylyltransferase RI02_17675 PF03102 NeuB family RI02_17675 PF08666 SAF domain RI02_17680 PF00583 Acetyltransferase (GNAT) family RI02_17685 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RI02_17690 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase RI02_17695 PF00535 Glycosyl transferase family 2 RI02_17705 PF09671 Spore coat protein (Spore_GerQ) RI02_17715 PF04241 Protein of unknown function (DUF423) RI02_17720 PF00860 Permease family RI02_17725 PF17261 Family of unknown function (DUF5327) RI02_17730 PF00171 Aldehyde dehydrogenase family RI02_17735 PF03167 Uracil DNA glycosylase superfamily RI02_17740 PF00535 Glycosyl transferase family 2 RI02_17750 PF08543 Phosphomethylpyrimidine kinase RI02_17765 PF08244 Glycosyl hydrolases family 32 C terminal RI02_17765 PF00251 Glycosyl hydrolases family 32 N-terminal domain RI02_17770 PF02378 Phosphotransferase system, EIIC RI02_17770 PF00367 phosphotransferase system, EIIB RI02_17775 PF03123 CAT RNA binding domain RI02_17775 PF00874 PRD domain RI02_17785 PF05922 Peptidase inhibitor I9 RI02_17785 PF02225 PA domain RI02_17785 PF00082 Subtilase family RI02_17785 PF13860 FlgD Ig-like domain RI02_17795 PF00296 Luciferase-like monooxygenase RI02_17800 PF00881 Nitroreductase family RI02_17805 PF01098 Cell cycle protein RI02_17810 PF17368 Spore morphogenesis and germination YwcE RI02_17815 PF03626 Prokaryotic Cytochrome C oxidase subunit IV RI02_17820 PF00510 Cytochrome c oxidase subunit III RI02_17825 PF00115 Cytochrome C and Quinol oxidase polypeptide I RI02_17830 PF02790 Cytochrome C oxidase subunit II, transmembrane domain RI02_17830 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RI02_17840 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain RI02_17840 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain RI02_17845 PF16363 GDP-mannose 4,6 dehydratase RI02_17850 PF08544 GHMP kinases C terminal RI02_17850 PF10509 Galactokinase galactose-binding signature RI02_17850 PF00288 GHMP kinases N terminal domain RI02_17865 PF04138 GtrA-like protein RI02_17895 PF13181 Tetratricopeptide repeat RI02_17895 PF18801 response regulator aspartate phosphatase H, N terminal RI02_17910 PF04341 Protein of unknown function, DUF485 RI02_17915 PF00474 Sodium:solute symporter family RI02_17935 PF02581 Thiamine monophosphate synthase RI02_17940 PF02110 Hydroxyethylthiazole kinase family RI02_17945 PF03466 LysR substrate binding domain RI02_17945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RI02_17950 PF03788 LrgA family RI02_17955 PF04172 LrgB-like family RI02_17960 PF17785 PUA-like domain RI02_17960 PF10672 S-adenosylmethionine-dependent methyltransferase RI02_17965 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RI02_17970 PF00005 ABC transporter RI02_17975 PF00528 Binding-protein-dependent transport system inner membrane component RI02_17980 PF00497 Bacterial extracellular solute-binding proteins, family 3 RI02_17985 PF18801 response regulator aspartate phosphatase H, N terminal RI02_17990 PF04607 Region found in RelA / SpoT proteins RI02_17995 PF02653 Branched-chain amino acid transport system / permease component RI02_18000 PF00005 ABC transporter RI02_18005 PF13407 Periplasmic binding protein domain RI02_18010 PF13229 Right handed beta helix region RI02_18015 PF01063 Amino-transferase class IV RI02_18030 PF11975 Family 4 glycosyl hydrolase C-terminal domain RI02_18030 PF02056 Family 4 glycosyl hydrolase RI02_18035 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit RI02_18040 PF02378 Phosphotransferase system, EIIC RI02_18045 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RI02_18050 PF08279 HTH domain RI02_18050 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RI02_18050 PF00874 PRD domain RI02_18050 PF05043 Mga helix-turn-helix domain RI02_18065 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RI02_18065 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RI02_18080 PF08281 Sigma-70, region 4 RI02_18080 PF04542 Sigma-70 region 2 RI02_18085 PF00544 Pectate lyase RI02_18090 PF00005 ABC transporter RI02_18090 PF00664 ABC transporter transmembrane region RI02_18095 PF00664 ABC transporter transmembrane region RI02_18095 PF00005 ABC transporter RI02_18100 PF02322 Cytochrome bd terminal oxidase subunit II RI02_18105 PF01654 Cytochrome bd terminal oxidase subunit I RI02_18110 PF00005 ABC transporter RI02_18115 PF01032 FecCD transport family RI02_18120 PF01497 Periplasmic binding protein RI02_18125 PF04203 Sortase domain RI02_18130 PF00005 ABC transporter RI02_18135 PF01032 FecCD transport family RI02_18140 PF01497 Periplasmic binding protein RI02_18150 PF05031 Iron Transport-associated domain RI02_18155 PF05031 Iron Transport-associated domain RI02_18160 PF01638 HxlR-like helix-turn-helix RI02_18165 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RI02_18170 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RI02_18170 PF00925 GTP cyclohydrolase II RI02_18175 PF01872 RibD C-terminal domain RI02_18175 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RI02_18185 PF01522 Polysaccharide deacetylase RI02_18190 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit RI02_18195 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RI02_18200 PF00232 Glycosyl hydrolase family 1 RI02_18210 PF02378 Phosphotransferase system, EIIC RI02_18215 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RI02_18215 PF00874 PRD domain RI02_18215 PF05043 Mga helix-turn-helix domain RI02_18215 PF08279 HTH domain RI02_18240 PF03553 Na+/H+ antiporter family RI02_18245 PF10415 Fumarase C C-terminus RI02_18245 PF00206 Lyase RI02_18250 PF17763 Glutaminase/Asparaginase C-terminal domain RI02_18250 PF00710 Asparaginase, N-terminal RI02_18255 PF01381 Helix-turn-helix RI02_18265 PF17353 Family of unknown function (DUF5381) RI02_18280 PF06013 Proteins of 100 residues with WXG RI02_18285 PF07687 Peptidase dimerisation domain RI02_18285 PF01546 Peptidase family M20/M25/M40 RI02_18300 PF01380 SIS domain RI02_18300 PF01418 Helix-turn-helix domain, rpiR family RI02_18305 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RI02_18305 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RI02_18315 PF02447 GntP family permease RI02_18320 PF01717 Cobalamin-independent synthase, Catalytic domain RI02_18345 PF00232 Glycosyl hydrolase family 1 RI02_18350 PF00367 phosphotransferase system, EIIB RI02_18350 PF02378 Phosphotransferase system, EIIC RI02_18350 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RI02_18355 PF00874 PRD domain RI02_18355 PF03123 CAT RNA binding domain RI02_18360 PF09234 Domain of unknown function (DUF1963) RI02_18370 PF02361 Cobalt transport protein RI02_18375 PF00005 ABC transporter RI02_18380 PF09819 ABC-type cobalt transport system, permease component RI02_18385 PF03070 TENA/THI-4/PQQC family RI02_18415 PF00801 PKD domain RI02_18415 PF05547 Immune inhibitor A peptidase M6 RI02_18420 PF03992 Antibiotic biosynthesis monooxygenase RI02_18425 PF00881 Nitroreductase family RI02_18430 PF01047 MarR family RI02_18435 PF00591 Glycosyl transferase family, a/b domain RI02_18435 PF02885 Glycosyl transferase family, helical bundle domain RI02_18435 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain RI02_18440 PF07662 Na+ dependent nucleoside transporter C-terminus RI02_18440 PF01773 Na+ dependent nucleoside transporter N-terminus RI02_18445 PF01791 DeoC/LacD family aldolase RI02_18450 PF04198 Putative sugar-binding domain RI02_18460 PF01757 Acyltransferase family RI02_18465 PF07690 Major Facilitator Superfamily RI02_18470 PF01488 Shikimate / quinate 5-dehydrogenase RI02_18470 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain RI02_18470 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain RI02_18475 PF13649 Methyltransferase domain RI02_18480 PF00072 Response regulator receiver domain RI02_18480 PF00196 Bacterial regulatory proteins, luxR family RI02_18490 PF13411 MerR HTH family regulatory protein RI02_18495 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RI02_18500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RI02_18505 PF00324 Amino acid permease RI02_18510 PF08713 DNA alkylation repair enzyme RI02_18515 PF02447 GntP family permease RI02_18520 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RI02_18520 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RI02_18525 PF01380 SIS domain RI02_18525 PF01418 Helix-turn-helix domain, rpiR family RI02_18530 PF01156 Inosine-uridine preferring nucleoside hydrolase RI02_18565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RI02_18565 PF03466 LysR substrate binding domain RI02_18570 PF00356 Bacterial regulatory proteins, lacI family RI02_18575 PF13416 Bacterial extracellular solute-binding protein RI02_18580 PF00528 Binding-protein-dependent transport system inner membrane component RI02_18585 PF00528 Binding-protein-dependent transport system inner membrane component RI02_18590 PF07745 Glycosyl hydrolase family 53 RI02_18595 PF02449 Beta-galactosidase RI02_18595 PF08532 Beta-galactosidase trimerisation domain RI02_18595 PF08533 Beta-galactosidase C-terminal domain RI02_18600 PF03600 Citrate transporter RI02_18610 PF12679 ABC-2 family transporter protein RI02_18615 PF00005 ABC transporter RI02_18620 PF03831 PhnA domain RI02_18620 PF08274 PhnA Zinc-Ribbon RI02_18625 PF02595 Glycerate kinase family RI02_18630 PF02447 GntP family permease RI02_18635 PF17853 GGDEF-like domain RI02_18635 PF05651 Putative sugar diacid recognition RI02_18635 PF13556 PucR C-terminal helix-turn-helix domain RI02_18640 PF17922 Tetracyclin repressor-like, C-terminal domain RI02_18640 PF00440 Bacterial regulatory proteins, tetR family RI02_18655 PF00005 ABC transporter RI02_18665 PF18801 response regulator aspartate phosphatase H, N terminal RI02_18670 PF00874 PRD domain RI02_18670 PF03123 CAT RNA binding domain RI02_18675 PF00232 Glycosyl hydrolase family 1 RI02_18680 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RI02_18680 PF02378 Phosphotransferase system, EIIC RI02_18680 PF00367 phosphotransferase system, EIIB RI02_18705 PF00293 NUDIX domain RI02_18720 PF00324 Amino acid permease RI02_18725 PF00356 Bacterial regulatory proteins, lacI family RI02_18735 PF07690 Major Facilitator Superfamily RI02_18740 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RI02_18740 PF08501 Shikimate dehydrogenase substrate binding domain RI02_18745 PF07690 Major Facilitator Superfamily RI02_18770 PF04740 LXG domain of WXG superfamily RI02_18770 PF14449 Pre-toxin TG RI02_18770 PF14410 HNH/ENDO VII superfamily nuclease with conserved GHE residues RI02_18785 PF00232 Glycosyl hydrolase family 1 RI02_18790 PF00367 phosphotransferase system, EIIB RI02_18790 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RI02_18790 PF02378 Phosphotransferase system, EIIC RI02_18795 PF00392 Bacterial regulatory proteins, gntR family RI02_18795 PF07702 UTRA domain RI02_18810 PF02567 Phenazine biosynthesis-like protein RI02_18815 PF03466 LysR substrate binding domain RI02_18815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RI02_18835 PF13545 Crp-like helix-turn-helix domain RI02_18835 PF00027 Cyclic nucleotide-binding domain RI02_18840 PF16123 Hydroxyacylglutathione hydrolase C-terminus RI02_18840 PF00753 Metallo-beta-lactamase superfamily RI02_18865 PF13361 UvrD-like helicase C-terminal domain RI02_18865 PF00580 UvrD/REP helicase N-terminal domain RI02_18870 PF13361 UvrD-like helicase C-terminal domain RI02_18870 PF00580 UvrD/REP helicase N-terminal domain RI02_18870 PF12462 DNA helicase IV / RNA helicase N terminal RI02_18880 PF02590 Predicted SPOUT methyltransferase RI02_18885 PF14116 YyzF-like protein RI02_18890 PF02361 Cobalt transport protein RI02_18895 PF12558 ATP-binding cassette cobalt transporter RI02_18895 PF00005 ABC transporter RI02_18900 PF07155 ECF-type riboflavin transporter, S component RI02_18915 PF00005 ABC transporter RI02_18920 PF00583 Acetyltransferase (GNAT) family RI02_18925 PF13180 PDZ domain RI02_18930 PF00753 Metallo-beta-lactamase superfamily RI02_18935 PF09648 YycH protein RI02_18940 PF07435 YycH protein RI02_18945 PF00672 HAMP domain RI02_18945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RI02_18945 PF00512 His Kinase A (phospho-acceptor) domain RI02_18945 PF13426 PAS domain RI02_18950 PF00486 Transcriptional regulatory protein, C terminal RI02_18950 PF00072 Response regulator receiver domain RI02_18975 PF00578 AhpC/TSA family RI02_18985 PF04235 Protein of unknown function (DUF418) RI02_18990 PF00709 Adenylosuccinate synthetase RI02_18995 PF00440 Bacterial regulatory proteins, tetR family RI02_19000 PF00067 Cytochrome P450 RI02_19005 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RI02_19010 PF03796 DnaB-like helicase C terminal domain RI02_19010 PF00772 DnaB-like helicase N terminal domain RI02_19015 PF16226 Domain of unknown function (DUF4885) RI02_19025 PF00756 Putative esterase RI02_19030 PF12833 Helix-turn-helix domain RI02_19030 PF01497 Periplasmic binding protein RI02_19035 PF01497 Periplasmic binding protein RI02_19040 PF00756 Putative esterase RI02_19045 PF14174 YycC-like protein RI02_19050 PF07690 Major Facilitator Superfamily RI02_19055 PF03948 Ribosomal protein L9, C-terminal domain RI02_19055 PF01281 Ribosomal protein L9, N-terminal domain RI02_19060 PF02272 DHHA1 domain RI02_19060 PF01368 DHH family RI02_19065 PF09991 Predicted membrane protein (DUF2232) RI02_19070 PF01368 DHH family RI02_19070 PF02833 DHHA2 domain RI02_19075 PF11738 Protein of unknown function (DUF3298) RI02_19075 PF13739 Deacetylase PdaC RI02_19080 PF04542 Sigma-70 region 2 RI02_19080 PF08281 Sigma-70, region 4 RI02_19090 PF00199 Catalase RI02_19090 PF06628 Catalase-related immune-responsive RI02_19095 PF03358 NADPH-dependent FMN reductase RI02_19100 PF01738 Dienelactone hydrolase family RI02_19105 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RI02_19110 PF00528 Binding-protein-dependent transport system inner membrane component RI02_19115 PF00571 CBS domain RI02_19115 PF00005 ABC transporter RI02_19120 PF01084 Ribosomal protein S18 RI02_19125 PF00436 Single-strand binding protein family RI02_19130 PF01250 Ribosomal protein S6 RI02_19135 PF06071 Protein of unknown function (DUF933) RI02_19135 PF01926 50S ribosome-binding GTPase RI02_19140 PF06107 Bacterial protein of unknown function (DUF951) RI02_19160 PF06866 Protein of unknown function (DUF1256) RI02_19165 PF02195 ParB-like nuclease domain RI02_19165 PF17762 HTH domain found in ParB protein RI02_19170 PF13614 AAA domain RI02_19180 PF17762 HTH domain found in ParB protein RI02_19180 PF02195 ParB-like nuclease domain RI02_19185 PF02527 rRNA small subunit methyltransferase G RI02_19190 PF01134 Glucose inhibited division protein A RI02_19190 PF13932 GidA associated domain RI02_19195 PF01926 50S ribosome-binding GTPase RI02_19195 PF12631 MnmE helical domain RI02_19195 PF10396 GTP-binding protein TrmE N-terminus RI02_19200 PF14804 Jag N-terminus RI02_19200 PF01424 R3H domain RI02_19205 PF02096 60Kd inner membrane protein RI02_19210 PF00825 Ribonuclease P RI02_19215 PF00468 Ribosomal protein L34 RI02_19220 PF11638 DnaA N-terminal domain RI02_19220 PF08299 Bacterial dnaA protein helix-turn-helix RI02_19220 PF00308 Bacterial dnaA protein RI02_19225 PF00712 DNA polymerase III beta subunit, N-terminal domain RI02_19225 PF02768 DNA polymerase III beta subunit, C-terminal domain RI02_19225 PF02767 DNA polymerase III beta subunit, central domain RI02_19235 PF02463 RecF/RecN/SMC N terminal domain RI02_19240 PF04025 Domain of unknown function (DUF370) RI02_19245 PF00986 DNA gyrase B subunit, carboxyl terminus RI02_19245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RI02_19245 PF01751 Toprim domain RI02_19245 PF00204 DNA gyrase B RI02_19250 PF03989 DNA gyrase C-terminal domain, beta-propeller RI02_19250 PF00521 DNA gyrase/topoisomerase IV, subunit A RI02_19280 PF14175 YaaC-like Protein RI02_19285 PF00478 IMP dehydrogenase / GMP reductase domain RI02_19285 PF00571 CBS domain RI02_19290 PF00768 D-alanyl-D-alanine carboxypeptidase RI02_19290 PF07943 Penicillin-binding protein 5, C-terminal domain RI02_19295 PF00155 Aminotransferase class I and II RI02_19295 PF00392 Bacterial regulatory proteins, gntR family RI02_19300 PF01680 SOR/SNZ family RI02_19305 PF01174 SNO glutamine amidotransferase family RI02_19310 PF02403 Seryl-tRNA synthetase N-terminal domain RI02_19310 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RI02_19315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RI02_19325 PF01712 Deoxynucleoside kinase RI02_19330 PF01712 Deoxynucleoside kinase RI02_19335 PF00704 Glycosyl hydrolases family 18 RI02_19335 PF01476 LysM domain RI02_19340 PF00857 Isochorismatase family RI02_19345 PF14437 MafB19-like deaminase RI02_19355 PF12169 DNA polymerase III subunits gamma and tau domain III RI02_19360 PF02575 YbaB/EbfC DNA-binding family RI02_19365 PF02132 RecR protein RI02_19365 PF13662 Toprim domain RI02_19370 PF10704 Protein of unknown function (DUF2508) RI02_19375 PF07441 SigmaK-factor processing regulatory protein BofA