locus-tag	class	description
LIS79_00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
LIS79_00010	COG0592	DNA-directed DNA polymerase activity
LIS79_00015	COG2501	S4 domain
LIS79_00020	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
LIS79_00030	COG0187	DNA topoisomerase II activity
LIS79_00035	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
LIS79_00070	COG0516	GMP reductase activity
LIS79_00070	COG0517	IMP dehydrogenase activity
LIS79_00075	COG1686	Belongs to the peptidase S11 family
LIS79_00080	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LIS79_00085	COG0214	Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively
LIS79_00090	COG0311	Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS
LIS79_00095	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
LIS79_00110	COG1428	Deoxynucleoside kinase
LIS79_00115	COG1428	Deoxynucleoside kinase
LIS79_00120	COG3858	chitin binding
LIS79_00120	COG1388	LysM domain
LIS79_00125	COG1335	isochorismatase
LIS79_00130	COG0590	tRNA wobble adenosine to inosine editing
LIS79_00145	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
LIS79_00150	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
LIS79_00195	COG4915	5-bromo-4-chloroindolyl phosphate hydrolysis protein
LIS79_00200	COG3853	Toxic anion resistance protein (TelA)
LIS79_00205	COG1982	Orn Lys Arg decarboxylase major
LIS79_00210	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
LIS79_00215	COG3870	Protein conserved in bacteria
LIS79_00220	COG1728	Protein conserved in bacteria
LIS79_00225	COG0470	DNA polymerase III
LIS79_00230	COG1774	PSP1 C-terminal conserved region
LIS79_00235	COG4467	Involved in initiation control of chromosome replication
LIS79_00240	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
LIS79_00245	COG2827	Endonuclease containing a URI domain
LIS79_00250	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
LIS79_00255	COG2002	toxin-antitoxin pair type II binding
LIS79_00260	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LIS79_00260	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LIS79_00265	COG0084	hydrolase, TatD family'
LIS79_00270	COG3583	domain protein
LIS79_00270	COG3584	3D domain protein
LIS79_00275	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
LIS79_00280	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
LIS79_00290	COG4466	Protein conserved in bacteria
LIS79_00300	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
LIS79_00305	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
LIS79_00310	COG0251	oxidation-reduction process
LIS79_00315	COG2088	sporulation resulting in formation of a cellular spore
LIS79_00325	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
LIS79_00330	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
LIS79_00335	COG0193	aminoacyl-tRNA hydrolase activity
LIS79_00345	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
LIS79_00350	COG2002	toxin-antitoxin pair type II binding
LIS79_00355	COG2244	polysaccharide biosynthetic process
LIS79_00360	COG3956	TIGRFAM MazG family protein
LIS79_00365	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
LIS79_00380	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
LIS79_00385	COG1098	S1 RNA binding domain
LIS79_00400	COG2208	phosphoserine phosphatase activity
LIS79_00405	COG2304	oxidoreductase activity
LIS79_00410	COG0515	serine threonine protein kinase
LIS79_00420	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
LIS79_00425	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
LIS79_00430	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
LIS79_00435	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
LIS79_00440	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LIS79_00445	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
LIS79_00450	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
LIS79_00455	COG0512	Glutamine amidotransferase of anthranilate synthase
LIS79_00460	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
LIS79_00465	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
LIS79_00470	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
LIS79_00475	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
LIS79_00480	COG1396	sequence-specific DNA binding
LIS79_00485	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LIS79_00490	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
LIS79_00570	COG4463	regulation of RNA biosynthetic process
LIS79_00575	COG3880	PFAM UvrB UvrC protein
LIS79_00580	COG3869	Catalyzes the specific phosphorylation of arginine residues in
LIS79_00585	COG0542	response to heat
LIS79_00590	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
LIS79_00595	COG1623	Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c- di-AMP acts as a signaling molecule that couples DNA integrity with progression of sporulation. The rise in c-di-AMP level generated by DisA while scanning the chromosome, operates as a positive signal that advances sporulation
LIS79_00600	COG4956	integral membrane protein (PIN domain superfamily)
LIS79_00605	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
LIS79_00610	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
LIS79_00615	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
LIS79_00620	COG1045	serine acetyltransferase
LIS79_00625	COG0215	cysteine-tRNA ligase activity
LIS79_00630	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
LIS79_00635	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LIS79_00640	COG3688	RNA-binding protein containing a PIN domain
LIS79_00645	COG1595	DNA-templated transcription, initiation
LIS79_00650	COG0267	Belongs to the bacterial ribosomal protein bL33 family
LIS79_00655	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
LIS79_00670	COG0081	regulation of translation
LIS79_00675	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
LIS79_00685	COG2813	Specifically methylates the guanine in position
LIS79_00690	COG0085	RNA polymerase activity
LIS79_00695	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
LIS79_00700	COG1358	cellular component organization or biogenesis
LIS79_00705	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
LIS79_00710	COG0049	tRNA binding
LIS79_00715	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
LIS79_00720	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
LIS79_00725	COG0596	Alpha beta hydrolase
LIS79_00735	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
LIS79_00740	COG0088	Forms part of the polypeptide exit tunnel
LIS79_00745	COG0089	rRNA binding
LIS79_00750	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
LIS79_00755	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
LIS79_00760	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
LIS79_00765	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
LIS79_00770	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
LIS79_00775	COG0255	Belongs to the universal ribosomal protein uL29 family
LIS79_00780	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
LIS79_00785	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
LIS79_00790	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
LIS79_00795	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
LIS79_00800	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
LIS79_00805	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
LIS79_00810	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
LIS79_00815	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
LIS79_00820	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
LIS79_00825	COG1841	ribosomal large subunit assembly
LIS79_00830	COG0200	Binds to the 23S rRNA
LIS79_00835	COG0201	protein transport
LIS79_00840	COG0563	adenylate kinase activity
LIS79_00845	COG0024	Methionine aminopeptidase
LIS79_00855	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
LIS79_00860	COG0257	Belongs to the bacterial ribosomal protein bL36 family
LIS79_00865	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
LIS79_00870	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
LIS79_00875	COG0202	RNA polymerase activity
LIS79_00880	COG0203	ribosomal protein L17
LIS79_00885	COG1122	ATPase activity
LIS79_00890	COG1122	ATPase activity
LIS79_00895	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
LIS79_00900	COG0101	tRNA pseudouridine synthase activity
LIS79_00905	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
LIS79_00910	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
LIS79_00930	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LIS79_00960	COG0860	N-Acetylmuramoyl-L-alanine amidase
LIS79_00965	COG0489	protein tyrosine kinase activity
LIS79_00975	COG2194	sulfuric ester hydrolase activity
LIS79_00980	COG0726	polysaccharide deacetylase
LIS79_01010	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
LIS79_01015	COG0659	secondary active sulfate transmembrane transporter activity
LIS79_01020	COG0385	Bile acid
LIS79_01025	COG3876	Protein conserved in bacteria
LIS79_01030	COG1472	Belongs to the glycosyl hydrolase 3 family
LIS79_01035	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
LIS79_01040	COG1263	PTS System
LIS79_01040	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LIS79_01045	COG1737	Transcriptional regulator
LIS79_01050	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
LIS79_01085	COG1595	DNA-templated transcription, initiation
LIS79_01090	COG5662	AntiSigma factor
LIS79_01095	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
LIS79_01100	COG4856	YbbR-like protein
LIS79_01105	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
LIS79_01110	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
LIS79_01140	COG1136	(ABC) transporter
LIS79_01150	COG1695	Transcriptional regulator
LIS79_01160	COG1131	(ABC) transporter
LIS79_01170	COG1413	lyase activity
LIS79_01175	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LIS79_01195	COG1131	(ABC) transporter
LIS79_01245	COG2311	Membrane
LIS79_01265	COG1476	TRANSCRIPTIONal
LIS79_01275	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
LIS79_01280	COG2207	Transcriptional regulator
LIS79_01285	COG1309	transcriptional regulator
LIS79_01300	COG1113	amino acid transport
LIS79_01305	COG0584	glycerophosphoryl diester phosphodiesterase
LIS79_01310	COG2271	Major facilitator Superfamily
LIS79_01320	COG1331	Highly conserved protein containing a thioredoxin domain
LIS79_01330	COG1331	Highly conserved protein containing a thioredoxin domain
LIS79_01335	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
LIS79_01350	COG0640	Transcriptional regulator
LIS79_01365	COG1937	Protein conserved in bacteria
LIS79_01370	COG2210	Belongs to the sulfur carrier protein TusA family
LIS79_01380	COG0425	Belongs to the sulfur carrier protein TusA family
LIS79_01380	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LIS79_01385	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LIS79_01385	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LIS79_01390	COG0425	Belongs to the sulfur carrier protein TusA family
LIS79_01395	COG0730	response to heat
LIS79_01405	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
LIS79_01410	COG2814	Major facilitator Superfamily
LIS79_01425	COG1846	Transcriptional regulator
LIS79_01430	COG1683	Conserved Protein
LIS79_01435	COG0656	L-ascorbic acid biosynthetic process
LIS79_01440	COG0371	Dehydrogenase
LIS79_01445	COG1054	Belongs to the UPF0176 family
LIS79_01450	COG0531	amino acid
LIS79_01460	COG3711	transcriptional antiterminator
LIS79_01465	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LIS79_01465	COG2190	(PTS) system
LIS79_01465	COG1263	PTS System
LIS79_01470	COG2723	6-phospho-beta-galactosidase activity
LIS79_01485	COG3711	transcriptional antiterminator
LIS79_01485	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
LIS79_01490	COG1940	carbohydrate kinase activity
LIS79_01495	COG0383	alpha-mannosidase activity
LIS79_01500	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LIS79_01505	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LIS79_01515	COG1404	Belongs to the peptidase S8 family
LIS79_01530	COG0833	amino acid
LIS79_01535	COG2040	homocysteine
LIS79_01540	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
LIS79_01560	COG2814	Major facilitator Superfamily
LIS79_01565	COG0456	acetyltransferase
LIS79_01580	COG1404	Belongs to the peptidase S8 family
LIS79_01590	COG1309	transcriptional regulator
LIS79_01595	COG1917	Cupin 2, conserved barrel domain protein
LIS79_01600	COG1063	alcohol dehydrogenase
LIS79_01605	COG1846	Transcriptional regulator
LIS79_01610	COG0318	PFAM AMP-dependent synthetase and ligase
LIS79_01615	COG0531	amino acid
LIS79_01625	COG0596	Alpha beta hydrolase
LIS79_01630	COG1115	amino acid carrier protein
LIS79_01635	COG2066	Belongs to the glutaminase family
LIS79_01640	COG4191	Histidine kinase
LIS79_01645	COG0784	Response regulator, receiver
LIS79_01650	COG1405	negative regulation of cell septum assembly
LIS79_01650	COG3012	SEC-C Motif Domain Protein
LIS79_01660	COG2197	response regulator
LIS79_01665	COG4585	Histidine kinase
LIS79_01675	COG0667	Aldo Keto reductase
LIS79_01680	COG3290	protein histidine kinase activity
LIS79_01685	COG3279	Response regulator of the LytR AlgR family
LIS79_01690	COG4555	ABC transporter
LIS79_01695	COG1668	transmembrane transport
LIS79_01715	COG3773	Cell wall hydrolase
LIS79_01720	COG1028	Short-chain dehydrogenase reductase Sdr
LIS79_01730	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
LIS79_01735	COG2310	stress, protein
LIS79_01740	COG2310	stress, protein
LIS79_01745	COG2310	stress, protein
LIS79_01750	COG0861	Integral membrane protein TerC family
LIS79_01780	COG3853	Toxic anion resistance protein (TelA)
LIS79_01785	COG0517	IMP dehydrogenase activity
LIS79_01785	COG4175	Glycine betaine
LIS79_01790	COG4176	ABC-type proline glycine betaine transport system permease component
LIS79_01795	COG2113	Glycine betaine
LIS79_01810	COG1473	amidohydrolase
LIS79_01815	COG1288	antiporter activity
LIS79_01820	COG0039	L-malate dehydrogenase activity
LIS79_01825	COG1620	l-lactate permease
LIS79_01830	COG1609	Transcriptional regulator
LIS79_01835	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
LIS79_01840	COG0561	phosphatase activity
LIS79_01845	COG0673	inositol 2-dehydrogenase activity
LIS79_01850	COG0738	Major facilitator superfamily
LIS79_01855	COG1280	lysine exporter protein (LysE YggA)
LIS79_01870	COG3403	YqcI/YcgG family
LIS79_01875	COG1113	amino acid transport
LIS79_01880	COG3665	Urea carboxylase-associated protein
LIS79_01885	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
LIS79_01895	COG1012	belongs to the aldehyde dehydrogenase family
LIS79_01900	COG0710	3-dehydroquinate dehydratase activity
LIS79_01905	COG0028	Belongs to the TPP enzyme family
LIS79_01915	COG1804	L-carnitine dehydratase bile acid-inducible protein F
LIS79_01920	COG2271	Major facilitator Superfamily
LIS79_01935	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
LIS79_01940	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LIS79_01945	COG1609	Transcriptional regulator
LIS79_01950	COG0477	Major facilitator Superfamily
LIS79_01955	COG2226	methyltransferase
LIS79_01960	COG0583	DNA-binding transcription factor activity
LIS79_01965	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LIS79_01970	COG3458	cephalosporin-C deacetylase activity
LIS79_01980	COG3541	Predicted nucleotidyltransferase
LIS79_01985	COG0506	proline dehydrogenase activity
LIS79_01990	COG1012	belongs to the aldehyde dehydrogenase family
LIS79_01995	COG2508	Transcriptional regulator
LIS79_02000	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
LIS79_02005	COG0765	amino acid transport
LIS79_02010	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LIS79_02020	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
LIS79_02025	COG1522	sequence-specific DNA binding
LIS79_02030	COG2746	aminoglycoside 3-N-acetyltransferase activity
LIS79_02040	COG3290	protein histidine kinase activity
LIS79_02040	COG0840	transmembrane signaling receptor activity
LIS79_02045	COG3209	COG3209 Rhs family protein
LIS79_02065	COG3842	ATPase activity
LIS79_02070	COG1176	ABC-type spermidine putrescine transport system, permease component I
LIS79_02080	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
LIS79_02090	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
LIS79_02105	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
LIS79_02120	COG4555	ABC transporter
LIS79_02135	COG0697	spore germination
LIS79_02140	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LIS79_02150	COG3708	Transcriptional regulator
LIS79_02150	COG2207	Transcriptional regulator
LIS79_02160	COG2364	Membrane
LIS79_02165	COG0737	Belongs to the 5'-nucleotidase family
LIS79_02170	COG3764	Sortase (surface protein transpeptidase)
LIS79_02175	COG2002	toxin-antitoxin pair type II binding
LIS79_02180	COG1126	abc transporter atp-binding protein
LIS79_02185	COG0765	amino acid transport
LIS79_02190	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LIS79_02195	COG0412	Dienelactone hydrolase
LIS79_02200	COG0833	amino acid
LIS79_02205	COG3104	oligopeptide transport
LIS79_02210	COG5434	Belongs to the glycosyl hydrolase 28 family
LIS79_02215	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
LIS79_02220	COG0456	acetyltransferase
LIS79_02225	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LIS79_02230	COG0765	amino acid transport
LIS79_02235	COG1126	abc transporter atp-binding protein
LIS79_02240	COG1473	amidohydrolase
LIS79_02245	COG2079	MmgE PrpD family protein
LIS79_02255	COG0745	RESPONSE REGULATOR receiver
LIS79_02260	COG5002	protein histidine kinase activity
LIS79_02260	COG3850	Histidine kinase
LIS79_02265	COG1366	Belongs to the anti-sigma-factor antagonist family
LIS79_02270	COG0527	aspartate kinase activity
LIS79_02275	COG2814	Major facilitator Superfamily
LIS79_02280	COG1309	transcriptional regulator
LIS79_02290	COG0640	Transcriptional regulator
LIS79_02300	COG0583	DNA-binding transcription factor activity
LIS79_02305	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LIS79_02310	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
LIS79_02315	COG0531	amino acid
LIS79_02320	COG1012	belongs to the aldehyde dehydrogenase family
LIS79_02325	COG2249	NAD(P)H dehydrogenase (quinone) activity
LIS79_02330	COG4549	nuclear export factor GLE1
LIS79_02335	COG1276	copper resistance
LIS79_02335	COG2372	response to copper ion
LIS79_02340	COG2213	PTS system mannitol-specific
LIS79_02345	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
LIS79_02350	COG0246	Mannitol dehydrogenase
LIS79_02355	COG0840	transmembrane signaling receptor activity
LIS79_02390	COG0346	lactoylglutathione lyase activity
LIS79_02400	COG0561	phosphatase activity
LIS79_02405	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
LIS79_02410	COG1914	H( )-stimulated, divalent metal cation uptake system
LIS79_02415	COG4336	lyase activity
LIS79_02420	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
LIS79_02425	COG1984	allophanate hydrolase subunit 2
LIS79_02430	COG1414	Transcriptional regulator
LIS79_02435	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
LIS79_02440	COG2755	lipolytic protein G-D-S-L family
LIS79_02450	COG3711	transcriptional antiterminator
LIS79_02455	COG2226	methyltransferase
LIS79_02460	COG1028	Short-chain dehydrogenase reductase Sdr
LIS79_02465	COG3871	stress protein (general stress protein 26)
LIS79_02485	COG2814	Major facilitator Superfamily
LIS79_02490	COG1802	Transcriptional regulator
LIS79_02495	COG1917	Cupin 2, conserved barrel domain protein
LIS79_02495	COG2207	Transcriptional regulator
LIS79_02500	COG0697	spore germination
LIS79_02505	COG0473	3-isopropylmalate dehydrogenase activity
LIS79_02510	COG0551	DNA topoisomerase type I activity
LIS79_02510	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
LIS79_02515	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
LIS79_02520	COG3706	GGDEF domain
LIS79_02525	COG5298	Protein conserved in bacteria
LIS79_02530	COG1215	transferase activity, transferring glycosyl groups
LIS79_02540	COG0531	amino acid
LIS79_02545	COG0028	Belongs to the TPP enzyme family
LIS79_02550	COG5444	nuclease activity
LIS79_02580	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LIS79_02585	COG1914	H( )-stimulated, divalent metal cation uptake system
LIS79_02590	COG2261	transglycosylase associated protein
LIS79_02595	COG2217	Heavy metal translocating P-type atpase
LIS79_02600	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
LIS79_02605	COG3290	protein histidine kinase activity
LIS79_02610	COG4565	transcriptional regulatory protein
LIS79_02615	COG1301	dicarboxylic acid transport
LIS79_02620	COG0628	permease
LIS79_02625	COG1301	dicarboxylic acid transport
LIS79_02630	COG1131	(ABC) transporter
LIS79_02635	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
LIS79_02650	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LIS79_02655	COG1181	Belongs to the D-alanine--D-alanine ligase family
LIS79_02660	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
LIS79_02675	COG0513	Belongs to the DEAD box helicase family
LIS79_02680	COG3402	PFAM membrane-flanked domain
LIS79_02685	COG3428	Bacterial PH domain
LIS79_02690	COG0705	Rhomboid family
LIS79_02695	COG0736	holo-[acyl-carrier-protein] synthase activity
LIS79_02700	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
LIS79_02705	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
LIS79_02710	COG0864	Transcriptional regulator
LIS79_02715	COG2337	Toxic component of a toxin-antitoxin (TA) module
LIS79_02720	COG1366	Belongs to the anti-sigma-factor antagonist family
LIS79_02725	COG1366	Belongs to the anti-sigma-factor antagonist family
LIS79_02730	COG2172	sigma factor antagonist activity
LIS79_02735	COG2208	phosphoserine phosphatase activity
LIS79_02740	COG1366	Belongs to the anti-sigma-factor antagonist family
LIS79_02745	COG2172	sigma factor antagonist activity
LIS79_02750	COG1191	sigma factor activity
LIS79_02755	COG2208	phosphoserine phosphatase activity
LIS79_02760	COG2183	response to ionizing radiation
LIS79_02770	COG3091	SprT-like family
LIS79_02775	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
LIS79_02780	COG0022	dehydrogenase e1 component
LIS79_02785	COG0508	dehydrogenase complex catalyzes the overall conversion of
LIS79_02790	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LIS79_02795	COG3284	Transcriptional regulator
LIS79_02840	COG1278	Cold shock
LIS79_02845	COG1263	PTS System
LIS79_02845	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LIS79_02845	COG2190	(PTS) system
LIS79_02850	COG3394	polysaccharide catabolic process
LIS79_02855	COG3711	transcriptional antiterminator
LIS79_02860	COG1064	alcohol dehydrogenase
LIS79_02865	COG0789	Transcriptional regulator
LIS79_02885	COG0477	Major facilitator Superfamily
LIS79_02890	COG0657	acetylesterase activity
LIS79_02900	COG4221	oxidoreductase activity
LIS79_02910	COG0252	asparaginase activity
LIS79_02915	COG2267	carboxylic ester hydrolase activity
LIS79_02930	COG2814	Major facilitator Superfamily
LIS79_02975	COG1309	transcriptional regulator
LIS79_02980	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
LIS79_02985	COG1846	Transcriptional regulator
LIS79_02990	COG0778	Nitroreductase
LIS79_03005	COG1396	sequence-specific DNA binding
LIS79_03015	COG0456	acetyltransferase
LIS79_03025	COG4122	O-methyltransferase activity
LIS79_03035	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
LIS79_03040	COG0697	spore germination
LIS79_03050	COG1301	dicarboxylic acid transport
LIS79_03090	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
LIS79_03095	COG0802	atpase or kinase
LIS79_03100	COG1214	PFAM Peptidase M22, glycoprotease
LIS79_03105	COG0456	acetyltransferase
LIS79_03110	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
LIS79_03115	COG0488	(ABC) transporter
LIS79_03120	COG0315	cyclic pyranopterin monophosphate synthase activity
LIS79_03125	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
LIS79_03130	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
LIS79_03135	COG0805	protein transport
LIS79_03150	COG1266	CAAX protease self-immunity
LIS79_03155	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
LIS79_03160	COG0459	protein refolding
LIS79_03165	COG1846	Transcriptional regulator
LIS79_03170	COG2808	Putative FMN-binding domain
LIS79_03175	COG1876	peptidase activity
LIS79_03200	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
LIS79_03205	COG0823	Involved in the tonB-independent uptake of proteins
LIS79_03215	COG2132	Multicopper oxidase
LIS79_03220	COG1113	amino acid transport
LIS79_03225	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
LIS79_03230	COG0714	Associated with various cellular activities
LIS79_03235	COG1721	protein (some members contain a von Willebrand factor type A (vWA) domain
LIS79_03240	COG1305	Transglutaminase-like
LIS79_03245	COG0519	Catalyzes the synthesis of GMP from XMP
LIS79_03245	COG0518	GMP synthase (glutamine-hydrolyzing) activity
LIS79_03260	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
LIS79_03265	COG0210	DNA helicase
LIS79_03270	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
LIS79_03275	COG1917	Cupin 2, conserved barrel domain protein
LIS79_03275	COG2207	Transcriptional regulator
LIS79_03280	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
LIS79_03285	COG2207	Transcriptional regulator
LIS79_03320	COG1595	DNA-templated transcription, initiation
LIS79_03330	COG2814	Major facilitator Superfamily
LIS79_03335	COG0583	DNA-binding transcription factor activity
LIS79_03340	COG2252	PERMEase
LIS79_03350	COG5583	Uncharacterized small protein (DUF2292)
LIS79_03355	COG3064	Membrane
LIS79_03360	COG4843	Uncharacterized protein conserved in bacteria (DUF2179)
LIS79_03370	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
LIS79_03375	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
LIS79_03380	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
LIS79_03385	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
LIS79_03390	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
LIS79_03395	COG0047	phosphoribosylformylglycinamidine synthase activity
LIS79_03400	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
LIS79_03405	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
LIS79_03410	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
LIS79_03415	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
LIS79_03420	COG0138	bifunctional purine biosynthesis protein purh
LIS79_03425	COG0151	Belongs to the GarS family
LIS79_03445	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
LIS79_03450	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
LIS79_03455	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
LIS79_03460	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LIS79_03470	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
LIS79_03475	COG4496	protein, YerC YecD
LIS79_03485	COG0069	glutamate synthase activity
LIS79_03500	COG1646	35 carbon atoms) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P), producing heptaprenylglyceryl phosphate (HepGP). This reaction is an ether-bond-formation step in the biosynthesis of archaea-type G1P-based membrane lipids found in Bacillales
LIS79_03505	COG0210	DNA helicase
LIS79_03510	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
LIS79_03515	COG4851	CamS sex pheromone cAM373 precursor
LIS79_03520	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
LIS79_03525	COG1285	pathogenesis
LIS79_03530	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LIS79_03535	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
LIS79_03540	COG0154	amidase activity
LIS79_03545	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
LIS79_03550	COG1309	transcriptional regulator
LIS79_03555	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LIS79_03560	COG1957	nucleoside hydrolase
LIS79_03565	COG1597	lipid kinase activity
LIS79_03570	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
LIS79_03590	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LIS79_03605	COG1959	2 iron, 2 sulfur cluster binding
LIS79_03610	COG0492	ferredoxin-NADP+ reductase activity
LIS79_03625	COG1486	melibiose metabolic process
LIS79_03635	COG2211	Major facilitator Superfamily
LIS79_03675	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
LIS79_03680	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LIS79_03685	COG1442	glycosyl transferase family 8
LIS79_03690	COG1216	Glycosyl transferase, family 2
LIS79_03695	COG1442	glycosyl transferase family 8
LIS79_03700	COG2223	nitrite transmembrane transporter activity
LIS79_03710	COG0471	metal ion transport
LIS79_03725	COG0071	Belongs to the small heat shock protein (HSP20) family
LIS79_03740	COG0531	amino acid
LIS79_03745	COG0457	Tetratricopeptide repeat
LIS79_03745	COG0463	Glycosyl transferase, family 2
LIS79_03750	COG0488	(ABC) transporter
LIS79_03755	COG1469	GTP cyclohydrolase I activity
LIS79_03760	COG0789	Transcriptional regulator
LIS79_03765	COG2814	Major facilitator Superfamily
LIS79_03770	COG0488	(ABC) transporter
LIS79_03775	COG0513	Belongs to the DEAD box helicase family
LIS79_03780	COG2130	NADP-dependent
LIS79_03800	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
LIS79_03800	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
LIS79_03805	COG1262	PFAM Formylglycine-generating sulfatase enzyme
LIS79_03815	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LIS79_03815	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LIS79_03825	COG3290	protein histidine kinase activity
LIS79_03830	COG4565	transcriptional regulatory protein
LIS79_03835	COG3181	Tripartite tricarboxylate transporter family receptor
LIS79_03840	COG2851	Citrate transporter
LIS79_03850	COG3479	Phenolic acid decarboxylase
LIS79_03855	COG1695	Transcriptional regulator
LIS79_03860	COG4362	Belongs to the NOS family. Bacterial NOS oxygenase subfamily
LIS79_03870	COG1254	Belongs to the acylphosphatase family
LIS79_03875	COG2258	MOSC domain
LIS79_03890	COG0024	Methionine aminopeptidase
LIS79_03895	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LIS79_03895	COG1263	PTS System
LIS79_03900	COG3739	integral membrane protein
LIS79_03915	COG1368	sulfuric ester hydrolase activity
LIS79_03920	COG0076	glutamate decarboxylase activity
LIS79_03935	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LIS79_03935	COG1263	PTS System
LIS79_03940	COG0366	Alpha amylase catalytic
LIS79_03945	COG2188	Transcriptional regulator
LIS79_03955	COG0737	Belongs to the 5'-nucleotidase family
LIS79_03960	COG0693	protein deglycase activity
LIS79_03965	COG4840	Belongs to the UPF0435 family
LIS79_03970	COG1115	amino acid carrier protein
LIS79_03975	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
LIS79_03980	COG4980	gas vesicle protein
LIS79_03985	COG1295	ribonuclease BN
LIS79_03990	COG0477	Major facilitator Superfamily
LIS79_04000	COG0387	Pfam Sodium calcium exchanger
LIS79_04010	COG0217	transcriptional regulatory protein
LIS79_04020	COG0668	transmembrane transport
LIS79_04025	COG0535	radical SAM domain protein
LIS79_04035	COG0726	polysaccharide deacetylase
LIS79_04045	COG0598	Magnesium transport protein CorA
LIS79_04055	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
LIS79_04060	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
LIS79_04075	COG0789	Transcriptional regulator
LIS79_04080	COG2814	Major facilitator Superfamily
LIS79_04095	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
LIS79_04140	COG2076	Multidrug Resistance protein
LIS79_04145	COG2076	Multidrug Resistance protein
LIS79_04150	COG1309	transcriptional regulator
LIS79_04160	COG4637	Psort location Cytoplasmic, score
LIS79_04165	COG2755	lipolytic protein G-D-S-L family
LIS79_04170	COG0492	ferredoxin-NADP+ reductase activity
LIS79_04175	COG2169	Transcriptional regulator
LIS79_04180	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
LIS79_04185	COG1132	(ABC) transporter
LIS79_04190	COG1742	UPF0060 membrane protein
LIS79_04195	COG1595	DNA-templated transcription, initiation
LIS79_04215	COG2318	DinB family
LIS79_04225	COG1846	Transcriptional regulator
LIS79_04230	COG0392	lysyltransferase activity
LIS79_04230	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
LIS79_04250	COG0778	Nitroreductase
LIS79_04265	COG1090	epimerase
LIS79_04270	COG2137	regulation of response to DNA damage stimulus
LIS79_04295	COG0463	Glycosyl transferase, family 2
LIS79_04300	COG4485	Bacterial membrane protein, YfhO
LIS79_04305	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LIS79_04320	COG2140	Oxalate decarboxylase
LIS79_04330	COG1191	sigma factor activity
LIS79_04340	COG1988	membrane-bound metal-dependent
LIS79_04345	COG1194	a g-specific adenine glycosylase
LIS79_04355	COG1028	Short-chain dehydrogenase reductase Sdr
LIS79_04370	COG3557	Belongs to the UPF0374 family
LIS79_04375	COG1132	(ABC) transporter
LIS79_04380	COG0444	Belongs to the ABC transporter superfamily
LIS79_04385	COG4608	Belongs to the ABC transporter superfamily
LIS79_04390	COG0747	negative chemotaxis
LIS79_04395	COG0601	transmembrane transport
LIS79_04400	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LIS79_04405	COG4129	membrane
LIS79_04410	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
LIS79_04415	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
LIS79_04420	COG0735	belongs to the Fur family
LIS79_04580	COG1368	sulfuric ester hydrolase activity
LIS79_04585	COG0681	Belongs to the peptidase S26 family
LIS79_04590	COG2873	o-acetylhomoserine
LIS79_04600	COG1116	anion transmembrane transporter activity
LIS79_04605	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
LIS79_04610	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LIS79_04615	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
LIS79_04625	COG1131	(ABC) transporter
LIS79_04655	COG3382	B3 4 domain protein
LIS79_04660	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
LIS79_04670	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
LIS79_04675	COG2766	serine protein kinase
LIS79_04680	COG2718	Belongs to the UPF0229 family
LIS79_04685	COG1566	PFAM secretion protein HlyD family protein
LIS79_04690	COG2814	Major facilitator Superfamily
LIS79_04695	COG0655	NAD(P)H dehydrogenase (quinone) activity
LIS79_04705	COG1278	Cold shock
LIS79_04710	COG3706	GGDEF domain
LIS79_04735	COG5577	PFAM Coat F domain
LIS79_04740	COG5002	protein histidine kinase activity
LIS79_04745	COG0737	Belongs to the 5'-nucleotidase family
LIS79_04745	COG1525	nuclease
LIS79_04745	COG4085	toxin activity
LIS79_04750	COG3764	Sortase (surface protein transpeptidase)
LIS79_04755	COG0564	pseudouridine synthase activity
LIS79_04765	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
LIS79_04770	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LIS79_04770	COG3153	acetyltransferase
LIS79_04790	COG3835	regulator
LIS79_04795	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
LIS79_04800	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
LIS79_04805	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
LIS79_04810	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
LIS79_04815	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
LIS79_04820	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
LIS79_04825	COG2203	Gaf domain
LIS79_04825	COG4585	Histidine kinase
LIS79_04830	COG2197	response regulator
LIS79_04845	COG0753	catalase activity
LIS79_04850	COG1959	2 iron, 2 sulfur cluster binding
LIS79_04855	COG1017	nitric oxide dioxygenase activity
LIS79_04855	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
LIS79_04860	COG2719	SpoVR family
LIS79_04865	COG1785	Belongs to the alkaline phosphatase family
LIS79_04870	COG0791	NLP P60 protein
LIS79_04870	COG1388	LysM domain
LIS79_04875	COG0531	amino acid
LIS79_04890	COG1595	DNA-templated transcription, initiation
LIS79_04895	COG0204	Acyl-transferase
LIS79_04900	COG1253	flavin adenine dinucleotide binding
LIS79_04905	COG0789	Transcriptional regulator
LIS79_04910	COG1253	flavin adenine dinucleotide binding
LIS79_04925	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
LIS79_04930	COG0584	glycerophosphoryl diester phosphodiesterase
LIS79_04940	COG0668	transmembrane transport
LIS79_04945	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
LIS79_04950	COG0726	polysaccharide deacetylase
LIS79_04955	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
LIS79_04960	COG0589	response to stress
LIS79_04965	COG1132	(ABC) transporter
LIS79_04970	COG1132	(ABC) transporter
LIS79_04975	COG0702	epimerase
LIS79_04985	COG3842	ATPase activity
LIS79_04990	COG2508	Transcriptional regulator
LIS79_05000	COG0189	ligase activity
LIS79_05005	COG0189	ligase activity
LIS79_05010	COG4399	Belongs to the UPF0754 family
LIS79_05015	COG3679	Belongs to the UPF0342 family
LIS79_05020	COG0561	phosphatase activity
LIS79_05025	COG0635	Involved in the biosynthesis of porphyrin-containing compound
LIS79_05035	COG0475	glutathione-regulated potassium exporter activity
LIS79_05040	COG0490	domain, Protein
LIS79_05060	COG0420	3'-5' exonuclease activity
LIS79_05065	COG4717	serine-type aminopeptidase activity
LIS79_05070	COG3481	metal-dependent phosphohydrolase, HD sub domain
LIS79_05080	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LIS79_05110	COG1846	Transcriptional regulator
LIS79_05115	COG4980	gas vesicle protein
LIS79_05130	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
LIS79_05135	COG0537	adenosine 5'-monophosphoramidase activity
LIS79_05140	COG1131	(ABC) transporter
LIS79_05145	COG4473	ABC transporter
LIS79_05155	COG1473	amidohydrolase
LIS79_05165	COG2329	Antibiotic biosynthesis monooxygenase
LIS79_05170	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LIS79_05175	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
LIS79_05180	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
LIS79_05185	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
LIS79_05190	COG1309	transcriptional regulator
LIS79_05195	COG1511	domain protein
LIS79_05200	COG1363	Peptidase, m42
LIS79_05205	COG1301	dicarboxylic acid transport
LIS79_05215	COG1234	tRNA 3'-trailer cleavage
LIS79_05220	COG0095	Lipoate-protein ligase
LIS79_05225	COG0318	PFAM AMP-dependent synthetase and ligase
LIS79_05235	COG0501	Belongs to the peptidase M48B family
LIS79_05240	COG1404	Belongs to the peptidase S8 family
LIS79_05245	COG0406	alpha-ribazole phosphatase activity
LIS79_05250	COG0840	transmembrane signaling receptor activity
LIS79_05255	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LIS79_05255	COG0723	plastoquinol--plastocyanin reductase activity
LIS79_05260	COG1028	Short-chain dehydrogenase reductase Sdr
LIS79_05270	COG4903	ComK protein
LIS79_05285	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LIS79_05290	COG2814	Major facilitator Superfamily
LIS79_05295	COG2732	(Barnase) inhibitor
LIS79_05300	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LIS79_05305	COG4605	iron ion homeostasis
LIS79_05310	COG4604	ABC transporter, ATP-binding protein
LIS79_05315	COG4607	ABC-type enterochelin transport system periplasmic component
LIS79_05320	COG1316	TRANSCRIPTIONal
LIS79_05335	COG0398	Pfam SNARE associated Golgi protein
LIS79_05340	COG0681	Belongs to the peptidase S26 family
LIS79_05345	COG3180	Ammonia monooxygenase
LIS79_05360	COG2259	Doxx family
LIS79_05365	COG1633	Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME)
LIS79_05370	COG3857	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination
LIS79_05375	COG1074	ATP-dependent DNA helicase activity
LIS79_05380	COG0420	3'-5' exonuclease activity
LIS79_05385	COG0419	ATPase involved in DNA repair
LIS79_05390	COG1403	HNH endonuclease
LIS79_05430	COG5337	Spore coat protein CotH
LIS79_05440	COG0179	Fumarylacetoacetate (FAA) hydrolase
LIS79_05455	COG0367	asparagine synthase
LIS79_05470	COG1562	ergosterol biosynthetic process
LIS79_05475	COG0534	Mate efflux family protein
LIS79_05480	COG2207	Transcriptional regulator
LIS79_05480	COG1917	Cupin 2, conserved barrel domain protein
LIS79_05505	COG0076	glutamate decarboxylase activity
LIS79_05540	COG0646	methionine synthase
LIS79_05540	COG1410	methionine synthase
LIS79_05545	COG0646	methionine synthase
LIS79_05545	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
LIS79_05550	COG1666	GTP binding
LIS79_05555	COG2996	Protein conserved in bacteria
LIS79_05560	COG1744	ABC transporter substrate-binding protein PnrA-like
LIS79_05565	COG0840	transmembrane signaling receptor activity
LIS79_05570	COG1307	EDD domain protein, DegV family
LIS79_05575	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
LIS79_05595	COG0561	phosphatase activity
LIS79_05600	COG1073	alpha beta
LIS79_05605	COG2151	metal-sulfur cluster biosynthetic enzyme
LIS79_05610	COG0277	FAD linked oxidase domain protein
LIS79_05615	COG2271	Major facilitator Superfamily
LIS79_05620	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
LIS79_05625	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
LIS79_05630	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
LIS79_05635	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
LIS79_05640	COG0505	Belongs to the CarA family
LIS79_05645	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
LIS79_05650	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
LIS79_05660	COG2814	Major facilitator Superfamily
LIS79_05670	COG2267	carboxylic ester hydrolase activity
LIS79_05680	COG1744	ABC transporter substrate-binding protein PnrA-like
LIS79_05695	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
LIS79_05700	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
LIS79_05705	COG5504	Zn-dependent protease
LIS79_05710	COG0444	Belongs to the ABC transporter superfamily
LIS79_05715	COG4608	Belongs to the ABC transporter superfamily
LIS79_05725	COG0601	transmembrane transport
LIS79_05730	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LIS79_05740	COG0180	Tryptophanyl-tRNA synthetase
LIS79_05750	COG4166	transmembrane transport
LIS79_05755	COG0601	transmembrane transport
LIS79_05760	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LIS79_05765	COG0444	Belongs to the ABC transporter superfamily
LIS79_05770	COG4608	Belongs to the ABC transporter superfamily
LIS79_05780	COG0456	acetyltransferase
LIS79_05785	COG1393	Belongs to the ArsC family
LIS79_05790	COG0861	Integral membrane protein TerC family
LIS79_05795	COG4862	establishment of competence for transformation
LIS79_05800	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LIS79_05810	COG1164	Oligoendopeptidase f
LIS79_05820	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
LIS79_05825	COG2346	COG2346, Truncated hemoglobins
LIS79_05830	COG0741	lytic transglycosylase activity
LIS79_05835	COG4116	CYTH
LIS79_05845	COG2357	RelA SpoT domain protein
LIS79_05850	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
LIS79_05855	COG0564	pseudouridine synthase activity
LIS79_05860	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
LIS79_05865	COG0475	glutathione-regulated potassium exporter activity
LIS79_05865	COG0569	domain protein
LIS79_05870	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
LIS79_05875	COG0352	thiamine-phosphate diphosphorylase activity
LIS79_05885	COG2104	thiamine diphosphate biosynthetic process
LIS79_05890	COG2022	thiamine diphosphate biosynthetic process
LIS79_05895	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
LIS79_05900	COG0351	phosphomethylpyrimidine kinase
LIS79_05905	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
LIS79_05960	COG0210	DNA helicase
LIS79_05970	COG2153	protein acetylation
LIS79_05975	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
LIS79_05980	COG2382	esterase
LIS79_05985	COG0626	cystathionine gamma-synthase activity
LIS79_05990	COG0626	cystathionine gamma-synthase activity
LIS79_06000	COG4974	Belongs to the 'phage' integrase family
LIS79_06005	COG2856	Zn peptidase
LIS79_06020	COG1396	sequence-specific DNA binding
LIS79_06035	COG3645	SOS response
LIS79_06035	COG3646	Phage regulatory protein
LIS79_06055	COG5377	YqaJ viral recombinase family
LIS79_06060	COG3723	Recombinational DNA repair protein, rece pathway
LIS79_06065	COG3935	DnaD domain protein
LIS79_06070	COG1484	DNA-dependent DNA replication
LIS79_06160	COG3677	Transposase
LIS79_06325	COG0825	malonyl-CoA metabolic process
LIS79_06345	COG0457	Tetratricopeptide repeat
LIS79_06355	COG2153	protein acetylation
LIS79_06360	COG2364	Membrane
LIS79_06375	COG0300	oxidoreductase activity
LIS79_06390	COG3173	Aminoglycoside phosphotransferase
LIS79_06395	COG0583	DNA-binding transcription factor activity
LIS79_06415	COG0583	DNA-binding transcription factor activity
LIS79_06420	COG2807	transmembrane transport
LIS79_06445	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
LIS79_06465	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
LIS79_06470	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
LIS79_06495	COG4195	phage-related replication protein
LIS79_06500	COG2856	Zn peptidase
LIS79_06505	COG3409	Peptidoglycan-binding domain 1 protein
LIS79_06505	COG5632	N-Acetylmuramoyl-L-alanine amidase
LIS79_06520	COG0306	phosphate transporter
LIS79_06525	COG1392	Phosphate transport regulator
LIS79_06535	COG0405	Gamma-glutamyltransferase
LIS79_06540	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
LIS79_06550	COG4208	sulfate ABC transporter
LIS79_06555	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
LIS79_06565	COG3775	system Galactitol-specific IIC component
LIS79_06580	COG1063	alcohol dehydrogenase
LIS79_06585	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
LIS79_06590	COG0022	dehydrogenase e1 component
LIS79_06590	COG0508	dehydrogenase complex catalyzes the overall conversion of
LIS79_06595	COG0508	dehydrogenase complex catalyzes the overall conversion of
LIS79_06600	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LIS79_06605	COG1028	Short-chain dehydrogenase reductase Sdr
LIS79_06610	COG1028	Short-chain dehydrogenase reductase Sdr
LIS79_06615	COG2390	Transcriptional regulator
LIS79_06625	COG0531	amino acid
LIS79_06630	COG0346	lactoylglutathione lyase activity
LIS79_06635	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LIS79_06640	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
LIS79_06645	COG2362	D-Aminopeptidase
LIS79_06650	COG0601	transmembrane transport
LIS79_06655	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LIS79_06660	COG0444	Belongs to the ABC transporter superfamily
LIS79_06665	COG4166	transmembrane transport
LIS79_06670	COG1619	proteins homologs of microcin C7 resistance protein MccF
LIS79_06675	COG4948	Mandelate Racemase Muconate Lactonizing
LIS79_06680	COG0791	NLP P60 protein
LIS79_06685	COG4608	Belongs to the ABC transporter superfamily
LIS79_06690	COG1834	amidinotransferase
LIS79_06695	COG1607	acyl-coa hydrolase
LIS79_06700	COG1695	Transcriptional regulator
LIS79_06715	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LIS79_06725	COG2076	Multidrug Resistance protein
LIS79_06730	COG2076	Multidrug Resistance protein
LIS79_06740	COG0788	formyltetrahydrofolate deformylase activity
LIS79_06745	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
LIS79_06750	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
LIS79_06755	COG0457	Tetratricopeptide repeat
LIS79_06765	COG1764	response to oxidative stress
LIS79_06770	COG1846	Transcriptional regulator
LIS79_06775	COG1764	response to oxidative stress
LIS79_06780	COG0590	tRNA wobble adenosine to inosine editing
LIS79_06785	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
LIS79_06790	COG1404	Belongs to the peptidase S8 family
LIS79_06805	COG0745	RESPONSE REGULATOR receiver
LIS79_06810	COG5002	protein histidine kinase activity
LIS79_06810	COG3850	Histidine kinase
LIS79_06815	COG3212	peptidase
LIS79_06820	COG3212	peptidase
LIS79_06830	COG2239	Acts as a magnesium transporter
LIS79_06840	COG0583	DNA-binding transcription factor activity
LIS79_06850	COG0789	Transcriptional regulator
LIS79_06865	COG1846	Transcriptional regulator
LIS79_06870	COG3300	MHYT domain
LIS79_06870	COG5001	Diguanylate cyclase
LIS79_06875	COG0586	Pfam SNARE associated Golgi protein
LIS79_06880	COG0861	Integral membrane protein TerC family
LIS79_06885	COG1191	sigma factor activity
LIS79_06905	COG0501	Belongs to the peptidase M48B family
LIS79_06910	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
LIS79_06915	COG2323	membrane
LIS79_06930	COG3594	Acyltransferase
LIS79_06935	COG5002	protein histidine kinase activity
LIS79_06940	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
LIS79_06945	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
LIS79_06950	COG4857	Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate
LIS79_06955	COG0436	Aminotransferase
LIS79_06960	COG1850	ribulose-bisphosphate carboxylase activity
LIS79_06965	COG4359	Dephosphorylates 2-hydroxy-3-keto-5-methylthiopentenyl- 1-phosphate (HK-MTPenyl-1-P) yielding 1,2-dihydroxy-3-keto-5- methylthiopentene (DHK-MTPene)
LIS79_06970	COG0235	Class ii aldolase
LIS79_06975	COG1791	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway
LIS79_06985	COG3852	Histidine kinase
LIS79_06990	COG1846	Transcriptional regulator
LIS79_06995	COG1360	Flagellar Motor Protein
LIS79_07000	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
LIS79_07005	COG0542	response to heat
LIS79_07010	COG3949	Membrane
LIS79_07015	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
LIS79_07020	COG0720	synthase
LIS79_07025	COG0602	queuosine metabolic process
LIS79_07030	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
LIS79_07045	COG4873	Protein conserved in bacteria
LIS79_07055	COG3773	Cell wall hydrolase
LIS79_07060	COG2244	polysaccharide biosynthetic process
LIS79_07065	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LIS79_07070	COG2217	Heavy metal translocating P-type atpase
LIS79_07075	COG0006	proline dipeptidase activity
LIS79_07080	COG1609	Transcriptional regulator
LIS79_07085	COG3711	transcriptional antiterminator
LIS79_07090	COG2190	(PTS) system
LIS79_07090	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LIS79_07090	COG1263	PTS System
LIS79_07095	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
LIS79_07100	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
LIS79_07110	COG1533	DNA photolyase activity
LIS79_07115	COG0840	transmembrane signaling receptor activity
LIS79_07125	COG2084	Dehydrogenase
LIS79_07130	COG2340	Cysteine-rich secretory protein family
LIS79_07135	COG0768	penicillin binding
LIS79_07140	COG4191	Histidine kinase
LIS79_07145	COG0436	Aminotransferase
LIS79_07150	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
LIS79_07160	COG1714	RDD family
LIS79_07170	COG0784	Response regulator, receiver
LIS79_07170	COG0835	chemotaxis
LIS79_07190	COG2814	Major facilitator Superfamily
LIS79_07195	COG1376	ErfK ybiS ycfS ynhG family protein
LIS79_07200	COG1408	metallophosphoesterase
LIS79_07205	COG1028	Short-chain dehydrogenase reductase Sdr
LIS79_07210	COG2200	EAL domain
LIS79_07215	COG3546	catalase activity
LIS79_07220	COG4703	Protein of unknown function (DUF1797)
LIS79_07225	COG1978	Selenoprotein B, glycine betaine sarcosine D-proline reductase family
LIS79_07235	COG0517	IMP dehydrogenase activity
LIS79_07240	COG0583	DNA-binding transcription factor activity
LIS79_07250	COG0716	FMN binding
LIS79_07260	COG0716	FMN binding
LIS79_07265	COG2171	N-acyltransferase activity
LIS79_07270	COG1473	amidohydrolase
LIS79_07280	COG0668	transmembrane transport
LIS79_07285	COG0450	alkyl hydroperoxide reductase
LIS79_07290	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LIS79_07305	COG0746	molybdenum cofactor guanylyltransferase activity
LIS79_07310	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
LIS79_07315	COG0303	'Molybdopterin
LIS79_07320	COG1763	Mo-molybdopterin cofactor biosynthetic process
LIS79_07325	COG0314	molybdopterin synthase activity
LIS79_07330	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
LIS79_07345	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LIS79_07350	COG1136	(ABC) transporter
LIS79_07355	COG0577	efflux transmembrane transporter activity
LIS79_07360	COG1349	DNA-binding transcription factor activity
LIS79_07365	COG1105	Belongs to the carbohydrate kinase PfkB family
LIS79_07370	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LIS79_07370	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LIS79_07370	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
LIS79_07375	COG0681	Belongs to the peptidase S26 family
LIS79_07385	COG0488	(ABC) transporter
LIS79_07390	COG2309	aminopeptidase activity
LIS79_07400	COG1077	Cell shape determining protein MreB Mrl
LIS79_07405	COG2002	toxin-antitoxin pair type II binding
LIS79_07410	COG3852	Histidine kinase
LIS79_07415	COG2105	PFAM AIG2 family protein
LIS79_07415	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
LIS79_07420	COG0569	domain protein
LIS79_07425	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
LIS79_07430	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
LIS79_07435	COG5503	Protein of unknown function (DUF1447)
LIS79_07440	COG0561	phosphatase activity
LIS79_07445	COG0242	peptide deformylase activity
LIS79_07460	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
LIS79_07465	COG0022	dehydrogenase e1 component
LIS79_07470	COG0508	dehydrogenase complex catalyzes the overall conversion of
LIS79_07475	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LIS79_07480	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LIS79_07490	COG1982	Orn Lys Arg decarboxylase major
LIS79_07495	COG4476	Belongs to the UPF0223 family
LIS79_07500	COG4493	Belongs to the UPF0637 family
LIS79_07510	COG0483	inositol monophosphate 1-phosphatase activity
LIS79_07525	COG1595	DNA-templated transcription, initiation
LIS79_07545	COG1217	gtp-binding protein TYPA
LIS79_07555	COG4896	Protein conserved in bacteria
LIS79_07565	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
LIS79_07570	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
LIS79_07575	COG2066	Belongs to the glutaminase family
LIS79_07580	COG4838	Belongs to the UPF0358 family
LIS79_07585	COG0772	Belongs to the SEDS family
LIS79_07590	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
LIS79_07595	COG0415	Belongs to the DNA photolyase family
LIS79_07600	COG1612	heme a metabolic process
LIS79_07605	COG0109	protoheme IX farnesyltransferase activity
LIS79_07610	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
LIS79_07610	COG2010	Cytochrome c
LIS79_07615	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
LIS79_07620	COG1845	cytochrome c oxidase, subunit III
LIS79_07625	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
LIS79_07630	COG3336	cytochrome c oxidase
LIS79_07640	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
LIS79_07645	COG2340	Cysteine-rich secretory protein family
LIS79_07665	COG3679	Belongs to the UPF0342 family
LIS79_07670	COG4471	UPF0298 protein
LIS79_07675	COG0742	ribosomal rna small subunit methyltransferase
LIS79_07680	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
LIS79_07685	COG3314	Sporulation integral membrane protein YlbJ
LIS79_07690	COG1752	Esterase of the alpha-beta hydrolase superfamily
LIS79_07695	COG3480	Lon protease (S16) C-terminal proteolytic domain
LIS79_07705	COG1399	metal-binding, possibly nucleic acid-binding protein
LIS79_07710	COG0333	Belongs to the bacterial ribosomal protein bL32 family
LIS79_07720	COG0454	-acetyltransferase
LIS79_07725	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
LIS79_07730	COG4365	Involved in bacillithiol (BSH) biosynthesis. May catalyze the last step of the pathway, the addition of cysteine to glucosamine malate (GlcN-Mal) to generate BSH
LIS79_07735	COG2001	Belongs to the MraZ family
LIS79_07740	COG0275	rRNA processing
LIS79_07745	COG4839	cell division protein FtsL
LIS79_07750	COG0768	penicillin binding
LIS79_07755	COG0768	penicillin binding
LIS79_07760	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
LIS79_07765	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
LIS79_07770	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
LIS79_07775	COG0772	Belongs to the SEDS family
LIS79_07780	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
LIS79_07785	COG0812	UDP-N-acetylmuramate dehydrogenase activity
LIS79_07790	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
LIS79_07795	COG3879	Bacterial protein of unknown function (DUF881)
LIS79_07800	COG3879	Bacterial protein of unknown function (DUF881)
LIS79_07805	COG3856	small basic protein
LIS79_07810	COG0849	cell division
LIS79_07815	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
LIS79_07820	COG1404	Belongs to the peptidase S8 family
LIS79_07820	COG4412	M6 family metalloprotease domain protein
LIS79_07830	COG1191	sigma factor activity
LIS79_07835	COG1191	sigma factor activity
LIS79_07840	COG2390	Transcriptional regulator
LIS79_07855	COG3730	PTS system glucitol sorbitol-specific
LIS79_07860	COG3732	PTS system glucitol sorbitol-specific
LIS79_07870	COG1119	ATPase activity
LIS79_07875	COG1873	PFAM PRC-barrel domain
LIS79_07880	COG1496	oxidoreductase activity
LIS79_07885	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
LIS79_07890	COG1799	cell septum assembly
LIS79_07895	COG0762	integral membrane protein
LIS79_07900	COG2302	S4 RNA-binding domain
LIS79_07905	COG3599	regulation of cell shape
LIS79_07910	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
LIS79_07915	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
LIS79_07920	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
LIS79_07925	COG0564	pseudouridine synthase activity
LIS79_07930	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
LIS79_07935	COG2233	PERMEase
LIS79_07940	COG0540	Belongs to the ATCase OTCase family
LIS79_07945	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
LIS79_07950	COG0505	Belongs to the CarA family
LIS79_07955	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
LIS79_07960	COG0543	2 iron, 2 sulfur cluster binding
LIS79_07965	COG0167	dihydroorotate dehydrogenase activity
LIS79_07970	COG0284	orotidine-5'-phosphate decarboxylase activity
LIS79_07975	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
LIS79_07985	COG0175	sulfate reduction
LIS79_07990	COG0306	phosphate transporter
LIS79_07995	COG2046	Belongs to the sulfate adenylyltransferase family
LIS79_08000	COG0529	Catalyzes the synthesis of activated sulfate
LIS79_08005	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
LIS79_08010	COG2138	Cobalamin (vitamin B12) biosynthesis CbiX protein
LIS79_08015	COG1648	precorrin-2 dehydrogenase activity
LIS79_08025	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
LIS79_08030	COG1561	YicC-like family, N-terminal region
LIS79_08035	COG2052	Domain of unknown function (DUF370)
LIS79_08040	COG0194	GDP metabolic process
LIS79_08045	COG1758	RNA polymerase activity
LIS79_08050	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
LIS79_08055	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
LIS79_08060	COG0242	peptide deformylase activity
LIS79_08065	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
LIS79_08070	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
LIS79_08070	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
LIS79_08075	COG0820	rRNA (adenine-C2-)-methyltransferase activity
LIS79_08080	COG0631	protein serine/threonine phosphatase activity
LIS79_08085	COG0515	serine threonine protein kinase
LIS79_08085	COG2815	serine threonine protein kinase
LIS79_08090	COG1162	GTPase activity
LIS79_08095	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
LIS79_08100	COG1564	THIamine pyrophosphokinase
LIS79_08110	COG0227	Belongs to the bacterial ribosomal protein bL28 family
LIS79_08115	COG1302	Protein conserved in bacteria
LIS79_08120	COG1461	Dihydroxyacetone kinase
LIS79_08125	COG1760	l-serine dehydratase
LIS79_08130	COG1760	l-serine dehydratase
LIS79_08135	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
LIS79_08140	COG1349	DNA-binding transcription factor activity
LIS79_08145	COG0416	fatty acid biosynthetic process
LIS79_08150	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
LIS79_08155	COG1028	Short-chain dehydrogenase reductase Sdr
LIS79_08160	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LIS79_08170	COG1196	nuclear chromosome segregation
LIS79_08175	COG0552	protein localization to endoplasmic reticulum
LIS79_08180	COG2739	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
LIS79_08185	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
LIS79_08190	COG0228	four-way junction DNA binding
LIS79_08195	COG1837	Belongs to the UPF0109 family
LIS79_08205	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
LIS79_08210	COG0336	Belongs to the RNA methyltransferase TrmD family
LIS79_08215	COG0335	large ribosomal subunit rRNA binding
LIS79_08220	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
LIS79_08225	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
LIS79_08235	COG2257	FlhB HrpN YscU SpaS Family
LIS79_08240	COG0045	succinate-CoA ligase (ADP-forming) activity
LIS79_08245	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
LIS79_08250	COG0758	DNA mediated transformation
LIS79_08255	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
LIS79_08260	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
LIS79_08265	COG4974	Belongs to the 'phage' integrase family
LIS79_08270	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
LIS79_08275	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
LIS79_08280	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
LIS79_08285	COG1815	bacterial-type flagellum-dependent cell motility
LIS79_08290	COG1558	bacterial-type flagellum-dependent cell motility
LIS79_08295	COG1677	Flagellar hook-basal body complex protein FliE
LIS79_08300	COG1766	The M ring may be actively involved in energy transduction
LIS79_08305	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
LIS79_08310	COG1317	bacterial-type flagellum organization
LIS79_08315	COG1157	protein secretion by the type III secretion system
LIS79_08320	COG2882	bacterial-type flagellum organization
LIS79_08325	COG3334	PFAM MgtE intracellular
LIS79_08330	COG3144	bacterial-type flagellum assembly
LIS79_08335	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
LIS79_08340	COG4786	Flagellar basal body rod
LIS79_08345	COG1582	Flagellar protein (FlbD)
LIS79_08350	COG1580	Controls the rotational direction of flagella during chemotaxis
LIS79_08355	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
LIS79_08360	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
LIS79_08360	COG1776	CheC inhibitor of MCP methylation
LIS79_08365	COG2201	protein-glutamate methylesterase activity
LIS79_08370	COG3190	flagellar
LIS79_08375	COG1338	Plays a role in the flagellum-specific transport system
LIS79_08380	COG1987	bacterial-type flagellum assembly
LIS79_08385	COG1684	flagellar biosynthetic protein fliR
LIS79_08390	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
LIS79_08395	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
LIS79_08400	COG1419	protein localization to endoplasmic reticulum
LIS79_08405	COG0455	bacterial-type flagellum organization
LIS79_08410	COG2201	protein-glutamate methylesterase activity
LIS79_08415	COG0643	Histidine kinase
LIS79_08415	COG2198	Histidine kinase
LIS79_08420	COG0835	chemotaxis
LIS79_08425	COG1776	CheC inhibitor of MCP methylation
LIS79_08435	COG1191	sigma factor activity
LIS79_08450	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
LIS79_08455	COG0528	UMP kinase activity
LIS79_08460	COG0233	cytoplasmic translational termination
LIS79_08465	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
LIS79_08470	COG4589	Belongs to the CDS family
LIS79_08475	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
LIS79_08480	COG0750	zinc metalloprotease
LIS79_08485	COG0442	prolyl-tRNA aminoacylation
LIS79_08490	COG2176	DNA-directed DNA polymerase activity
LIS79_08505	COG3693	PFAM glycoside hydrolase, family 10
LIS79_08515	COG0779	Required for maturation of 30S ribosomal subunits
LIS79_08520	COG0195	Participates in both transcription termination and antitermination
LIS79_08525	COG2740	Nucleic-acid-binding protein implicated in transcription termination
LIS79_08530	COG1358	cellular component organization or biogenesis
LIS79_08535	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
LIS79_08540	COG1550	Protein conserved in bacteria
LIS79_08545	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
LIS79_08550	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
LIS79_08555	COG0196	riboflavin kinase activity
LIS79_08560	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
LIS79_08565	COG1185	polyribonucleotide nucleotidyltransferase activity
LIS79_08570	COG0726	polysaccharide deacetylase
LIS79_08575	COG0612	Peptidase, M16
LIS79_08585	COG1873	PFAM PRC-barrel domain
LIS79_08590	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
LIS79_08595	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
LIS79_08600	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
LIS79_08605	COG0527	aspartate kinase activity
LIS79_08615	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
LIS79_08620	COG0740	serine-type endopeptidase activity
LIS79_08630	COG1674	ftsk spoiiie
LIS79_08630	COG4980	gas vesicle protein
LIS79_08635	COG2188	Transcriptional regulator
LIS79_08640	COG2814	Major facilitator Superfamily
LIS79_08645	COG1033	growth of symbiont in host cell
LIS79_08645	COG2409	Drug exporters of the RND superfamily
LIS79_08650	COG0612	Peptidase, M16
LIS79_08655	COG0612	Peptidase, M16
LIS79_08665	COG1033	growth of symbiont in host cell
LIS79_08665	COG2409	Drug exporters of the RND superfamily
LIS79_08670	COG0300	oxidoreductase activity
LIS79_08685	COG1426	Protein conserved in bacteria
LIS79_08690	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
LIS79_08695	COG1058	Belongs to the CinA family
LIS79_08695	COG1546	Belongs to the CinA family
LIS79_08700	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
LIS79_08705	COG1418	mRNA catabolic process
LIS79_08710	COG1692	metallophosphoesterase
LIS79_08715	COG2359	stage V sporulation protein S
LIS79_08720	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LIS79_08725	COG1063	alcohol dehydrogenase
LIS79_08730	COG0156	8-amino-7-oxononanoate synthase activity
LIS79_08740	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
LIS79_08745	COG4550	Control of competence regulator ComK, YlbF/YmcA
LIS79_08755	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
LIS79_08760	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
LIS79_08780	COG1329	Transcriptional regulator
LIS79_08785	COG4195	phage-related replication protein
LIS79_08790	COG0457	Tetratricopeptide repeat
LIS79_08795	COG1404	Belongs to the peptidase S8 family
LIS79_08800	COG4195	phage-related replication protein
LIS79_08805	COG1764	response to oxidative stress
LIS79_08835	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
LIS79_08840	COG1923	regulation of RNA biosynthetic process
LIS79_08855	COG1780	Probably involved in ribonucleotide reductase function
LIS79_08860	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
LIS79_08865	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
LIS79_08870	COG4112	unkown
LIS79_08880	COG0464	growth
LIS79_08885	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
LIS79_08890	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
LIS79_08895	COG0789	Transcriptional regulator
LIS79_08900	COG0174	glutamine synthetase
LIS79_08915	COG5444	nuclease activity
LIS79_08930	COG0457	Tetratricopeptide repeat
LIS79_08940	COG0604	alcohol dehydrogenase
LIS79_08950	COG5444	nuclease activity
LIS79_08975	COG5646	InterPro IPR014922
LIS79_08995	COG0457	Tetratricopeptide repeat
LIS79_09005	COG3619	membrane
LIS79_09010	COG3285	dna ligase
LIS79_09010	COG1793	dna ligase
LIS79_09015	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
LIS79_09020	COG4876	unkown
LIS79_09030	COG1959	2 iron, 2 sulfur cluster binding
LIS79_09035	COG0702	epimerase
LIS79_09045	COG0247	lactate metabolic process
LIS79_09050	COG1139	Iron-sulfur cluster binding protein
LIS79_09055	COG1556	Lactate utilization protein
LIS79_09075	COG2323	membrane
LIS79_09080	COG1309	transcriptional regulator
LIS79_09085	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
LIS79_09085	COG2124	cytochrome p450
LIS79_09090	COG3591	Belongs to the peptidase S1B family
LIS79_09095	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
LIS79_09100	COG3209	COG3209 Rhs family protein
LIS79_09105	COG1366	Belongs to the anti-sigma-factor antagonist family
LIS79_09120	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
LIS79_09125	COG1388	LysM domain
LIS79_09130	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
LIS79_09135	COG4224	UPF0291 protein
LIS79_09140	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
LIS79_09150	COG3763	UPF0154 protein
LIS79_09160	COG0785	Cytochrome C biogenesis protein
LIS79_09165	COG4846	Membrane protein involved in cytochrome C biogenesis
LIS79_09175	COG0071	Belongs to the small heat shock protein (HSP20) family
LIS79_09190	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
LIS79_09195	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LIS79_09215	COG0824	Thioesterase
LIS79_09225	COG4841	protein insertion into membrane
LIS79_09230	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
LIS79_09235	COG1832	CoA-binding protein
LIS79_09240	COG0187	DNA topoisomerase II activity
LIS79_09245	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
LIS79_09255	COG0738	Major facilitator superfamily
LIS79_09260	COG0473	3-isopropylmalate dehydrogenase activity
LIS79_09275	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
LIS79_09280	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
LIS79_09285	COG0640	Transcriptional regulator
LIS79_09295	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
LIS79_09300	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
LIS79_09310	COG1309	transcriptional regulator
LIS79_09315	COG2249	NAD(P)H dehydrogenase (quinone) activity
LIS79_09320	COG1733	regulation of RNA biosynthetic process
LIS79_09325	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
LIS79_09330	COG0251	oxidation-reduction process
LIS79_09360	COG0657	acetylesterase activity
LIS79_09375	COG2205	protein histidine kinase activity
LIS79_09380	COG0745	RESPONSE REGULATOR receiver
LIS79_09390	COG3507	Belongs to the glycosyl hydrolase 43 family
LIS79_09395	COG1012	belongs to the aldehyde dehydrogenase family
LIS79_09400	COG1486	melibiose metabolic process
LIS79_09405	COG0395	ABC-type sugar transport system, permease component
LIS79_09410	COG1175	transmembrane transport
LIS79_09415	COG1653	transport
LIS79_09420	COG1609	Transcriptional regulator
LIS79_09425	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
LIS79_09440	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
LIS79_09450	COG0456	acetyltransferase
LIS79_09455	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LIS79_09470	COG1846	Transcriptional regulator
LIS79_09475	COG2814	Major facilitator Superfamily
LIS79_09485	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LIS79_09485	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
LIS79_09485	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LIS79_09490	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LIS79_09490	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LIS79_09490	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
LIS79_09495	COG1105	Belongs to the carbohydrate kinase PfkB family
LIS79_09505	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LIS79_09530	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
LIS79_09535	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LIS79_09540	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
LIS79_09545	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
LIS79_09550	COG1024	Enoyl-CoA hydratase
LIS79_09555	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
LIS79_09560	COG0511	ligase activity, forming carbon-carbon bonds
LIS79_09565	COG0439	Biotin carboxylase
LIS79_09570	COG0318	PFAM AMP-dependent synthetase and ligase
LIS79_09575	COG1960	acyl-CoA dehydrogenase activity
LIS79_09580	COG1649	PFAM Uncharacterised BCR, COG1649
LIS79_09585	COG2365	Tyrosine phosphatase family
LIS79_09590	COG1349	DNA-binding transcription factor activity
LIS79_09595	COG1942	4-Oxalocrotonate Tautomerase
LIS79_09605	COG3835	regulator
LIS79_09610	COG0277	FAD linked oxidase domain protein
LIS79_09615	COG0247	lactate metabolic process
LIS79_09635	COG0166	Belongs to the GPI family
LIS79_09640	COG2246	polysaccharide biosynthetic process
LIS79_09645	COG1210	Utp--glucose-1-phosphate uridylyltransferase
LIS79_09650	COG0586	Pfam SNARE associated Golgi protein
LIS79_09655	COG1587	Uroporphyrinogen-III synthase
LIS79_09665	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
LIS79_09680	COG0534	Mate efflux family protein
LIS79_09685	COG2027	D-alanyl-D-alanine carboxypeptidase
LIS79_09690	COG4677	pectinesterase activity
LIS79_09695	COG2323	membrane
LIS79_09700	COG2146	nitrite reductase [NAD(P)H] activity
LIS79_09705	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LIS79_09710	COG0243	molybdopterin cofactor binding
LIS79_09715	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LIS79_09720	COG2223	nitrite transmembrane transporter activity
LIS79_09725	COG0493	'glutamate synthase
LIS79_09730	COG0067	glutamate synthase
LIS79_09730	COG0069	glutamate synthase activity
LIS79_09730	COG0070	glutamate synthase
LIS79_09735	COG0583	DNA-binding transcription factor activity
LIS79_09745	COG1132	(ABC) transporter
LIS79_09750	COG4978	Transcriptional regulator
LIS79_09750	COG0789	Transcriptional regulator
LIS79_09755	COG0454	-acetyltransferase
LIS79_09760	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
LIS79_09765	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
LIS79_09770	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
LIS79_09780	COG0243	molybdopterin cofactor binding
LIS79_09790	COG1070	Carbohydrate kinase
LIS79_09795	COG2115	Belongs to the xylose isomerase family
LIS79_09800	COG1940	carbohydrate kinase activity
LIS79_09810	COG2211	Major facilitator Superfamily
LIS79_09815	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LIS79_09820	COG1994	Peptidase M50
LIS79_09840	COG1309	transcriptional regulator
LIS79_09845	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LIS79_09850	COG3708	Transcriptional regulator
LIS79_09855	COG2378	regulation of single-species biofilm formation
LIS79_09865	COG0640	Transcriptional regulator
LIS79_09870	COG0531	amino acid
LIS79_09875	COG0741	lytic transglycosylase activity
LIS79_09880	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
LIS79_09885	COG2079	MmgE PrpD family protein
LIS79_09890	COG0372	Belongs to the citrate synthase family
LIS79_09895	COG2322	membrane
LIS79_09905	COG1388	LysM domain
LIS79_09905	COG3584	3D domain protein
LIS79_09910	COG0514	ATP-dependent DNA helicase (RecQ)
LIS79_09920	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
LIS79_09945	COG1012	belongs to the aldehyde dehydrogenase family
LIS79_09950	COG1657	PFAM Prenyltransferase squalene oxidase
LIS79_09955	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
LIS79_09960	COG0385	Bile acid
LIS79_09965	COG0508	dehydrogenase complex catalyzes the overall conversion of
LIS79_09970	COG0567	Dehydrogenase, E1 component
LIS79_09975	COG4548	von Willebrand factor, type A
LIS79_09980	COG0714	Associated with various cellular activities
LIS79_09985	COG2032	superoxide dismutase activity
LIS79_09990	COG0791	NLP P60 protein
LIS79_09990	COG1388	LysM domain
LIS79_09995	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
LIS79_10000	COG0534	Mate efflux family protein
LIS79_10005	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
LIS79_10010	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
LIS79_10020	COG2962	Rard protein
LIS79_10035	COG1733	regulation of RNA biosynthetic process
LIS79_10040	COG0778	Nitroreductase
LIS79_10050	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LIS79_10055	COG0793	Belongs to the peptidase S41A family
LIS79_10055	COG3409	Peptidoglycan-binding domain 1 protein
LIS79_10060	COG2226	methyltransferase
LIS79_10070	COG1876	peptidase activity
LIS79_10075	COG0813	purine-nucleoside phosphorylase activity
LIS79_10085	COG0671	phosphoesterase, PA-phosphatase related
LIS79_10100	COG4479	Belongs to the UPF0346 family
LIS79_10110	COG1509	lysine 2,3-aminomutase activity
LIS79_10115	COG3829	transcription factor binding
LIS79_10120	COG0463	Glycosyl transferase, family 2
LIS79_10135	COG4641	Protein conserved in bacteria
LIS79_10145	COG1086	Polysaccharide biosynthesis protein
LIS79_10150	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LIS79_10155	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LIS79_10160	COG1846	Transcriptional regulator
LIS79_10180	COG4698	Protein conserved in bacteria
LIS79_10185	COG2755	lipolytic protein G-D-S-L family
LIS79_10190	COG1999	signal sequence binding
LIS79_10205	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
LIS79_10210	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
LIS79_10215	COG1272	protein, Hemolysin III
LIS79_10220	COG0204	Acyl-transferase
LIS79_10225	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
LIS79_10230	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
LIS79_10235	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
LIS79_10245	COG2136	Putative SAM-dependent methyltransferase
LIS79_10245	COG2521	methyltransferase
LIS79_10255	COG0129	dihydroxy-acid dehydratase activity
LIS79_10260	COG1413	lyase activity
LIS79_10265	COG1418	mRNA catabolic process
LIS79_10270	COG0386	Belongs to the glutathione peroxidase family
LIS79_10275	COG2759	Belongs to the formate--tetrahydrofolate ligase family
LIS79_10280	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
LIS79_10285	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
LIS79_10295	COG1278	Cold shock
LIS79_10310	COG0328	RNA-DNA hybrid ribonuclease activity
LIS79_10315	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
LIS79_10320	COG0328	RNA-DNA hybrid ribonuclease activity
LIS79_10330	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LIS79_10340	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
LIS79_10350	COG1755	Isoprenylcysteine carboxyl methyltransferase
LIS79_10355	COG3424	synthase
LIS79_10360	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
LIS79_10365	COG0726	polysaccharide deacetylase
LIS79_10370	COG2233	PERMEase
LIS79_10375	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
LIS79_10380	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
LIS79_10385	COG1199	ATP-dependent helicase activity
LIS79_10395	COG0116	Belongs to the methyltransferase superfamily
LIS79_10405	COG3599	regulation of cell shape
LIS79_10410	COG4474	Belongs to the UPF0398 family
LIS79_10420	COG3359	exonuclease
LIS79_10425	COG1111	helicase
LIS79_10425	COG1205	dead DEAH box helicase
LIS79_10430	COG1902	pentaerythritol trinitrate reductase activity
LIS79_10435	COG2190	(PTS) system
LIS79_10440	COG0071	Belongs to the small heat shock protein (HSP20) family
LIS79_10470	COG3331	DNA recombination
LIS79_10475	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LIS79_10475	COG4499	WXG100 protein secretion system (Wss), protein YukC
LIS79_10485	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
LIS79_10490	COG3935	DnaD domain protein
LIS79_10495	COG0017	Asparaginyl-tRNA synthetase
LIS79_10500	COG5353	protein conserved in bacteria
LIS79_10510	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
LIS79_10510	COG1199	ATP-dependent helicase activity
LIS79_10515	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
LIS79_10520	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
LIS79_10525	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
LIS79_10535	COG0617	tRNA 3'-terminal CCA addition
LIS79_10540	COG0438	transferase activity, transferring glycosyl groups
LIS79_10545	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
LIS79_10550	COG1803	Methylglyoxal synthase
LIS79_10555	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
LIS79_10560	COG1694	Mazg nucleotide pyrophosphohydrolase
LIS79_10565	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
LIS79_10575	COG4347	Protein of unknown function (DUF1405)
LIS79_10585	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
LIS79_10590	COG0723	plastoquinol--plastocyanin reductase activity
LIS79_10600	COG5582	Belongs to the UPF0302 family
LIS79_10605	COG0457	Tetratricopeptide repeat
LIS79_10610	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
LIS79_10615	COG0287	Prephenate dehydrogenase
LIS79_10620	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
LIS79_10625	COG0159	tryptophan synthase activity
LIS79_10630	COG0133	tryptophan synthase activity
LIS79_10635	COG0135	phosphoribosylanthranilate isomerase activity
LIS79_10640	COG0134	indole-3-glycerol-phosphate synthase activity
LIS79_10645	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
LIS79_10655	COG4401	Chorismate mutase type I
LIS79_10660	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
LIS79_10665	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
LIS79_10670	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
LIS79_10675	COG0105	UTP biosynthetic process
LIS79_10680	COG0142	geranyltranstransferase activity
LIS79_10685	COG2226	methyltransferase
LIS79_10690	COG0142	geranyltranstransferase activity
LIS79_10700	COG0302	gtp cyclohydrolase
LIS79_10705	COG0776	regulation of translation
LIS79_10710	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
LIS79_10725	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
LIS79_10730	COG1160	GTP binding
LIS79_10755	COG1304	FMN binding
LIS79_10760	COG0539	negative regulation of cytoplasmic translation
LIS79_10765	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
LIS79_10775	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
LIS79_10780	COG2959	enzyme of heme biosynthesis
LIS79_10785	COG3409	Peptidoglycan-binding domain 1 protein
LIS79_10785	COG3773	Cell wall hydrolase
LIS79_10790	COG2339	peptidase activity
LIS79_10795	COG0492	ferredoxin-NADP+ reductase activity
LIS79_10800	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
LIS79_10805	COG4862	establishment of competence for transformation
LIS79_10810	COG1408	metallophosphoesterase
LIS79_10820	COG1388	LysM domain
LIS79_10825	COG1266	CAAX protease self-immunity
LIS79_10830	COG0514	ATP-dependent DNA helicase (RecQ)
LIS79_10835	COG4955	Helix-turn-helix domain
LIS79_10840	COG1141	Ferredoxin
LIS79_10845	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
LIS79_10850	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
LIS79_10865	COG1595	DNA-templated transcription, initiation
LIS79_10870	COG5002	protein histidine kinase activity
LIS79_10875	COG0745	RESPONSE REGULATOR receiver
LIS79_10880	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
LIS79_10885	COG1333	cytochrome c biogenesis protein
LIS79_10890	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LIS79_10895	COG1187	pseudouridine synthase activity
LIS79_10900	COG0700	Nucleoside recognition
LIS79_10905	COG2715	membrane protein required for spore maturation
LIS79_10910	COG1686	Belongs to the peptidase S11 family
LIS79_10920	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
LIS79_10925	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
LIS79_10935	COG1547	Domain of unknown function (DUF309)
LIS79_10940	COG0456	acetyltransferase
LIS79_10945	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
LIS79_10955	COG0307	riboflavin synthase, alpha
LIS79_10975	COG2814	Major facilitator Superfamily
LIS79_10980	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
LIS79_10985	COG4086	secreted protein
LIS79_10990	COG0019	diaminopimelate decarboxylase activity
LIS79_10995	COG0697	spore germination
LIS79_11010	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
LIS79_11030	COG1191	sigma factor activity
LIS79_11035	COG2172	sigma factor antagonist activity
LIS79_11045	COG1686	Belongs to the peptidase S11 family
LIS79_11050	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
LIS79_11055	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
LIS79_11060	COG4974	Belongs to the 'phage' integrase family
LIS79_11070	COG0735	belongs to the Fur family
LIS79_11075	COG1300	Membrane
LIS79_11080	COG1404	Belongs to the peptidase S8 family
LIS79_11090	COG2153	protein acetylation
LIS79_11095	COG1379	DNA repair
LIS79_11100	COG0494	nUDIX hydrolase
LIS79_11105	COG0667	Aldo Keto reductase
LIS79_11115	COG1073	alpha beta
LIS79_11120	COG0457	Tetratricopeptide repeat
LIS79_11130	COG4918	Iron-sulphur cluster biosynthesis
LIS79_11135	COG4305	rare lipoprotein A
LIS79_11140	COG0456	acetyltransferase
LIS79_11140	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
LIS79_11145	COG0456	acetyltransferase
LIS79_11155	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
LIS79_11165	COG2211	Major facilitator Superfamily
LIS79_11170	COG1072	(Pantothenic acid kinase))
LIS79_11175	COG0446	pyridine nucleotide-disulphide oxidoreductase
LIS79_11185	COG0300	oxidoreductase activity
LIS79_11190	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LIS79_11195	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
LIS79_11205	COG4187	Peptidase family M20/M25/M40
LIS79_11210	COG1902	pentaerythritol trinitrate reductase activity
LIS79_11215	COG0596	Alpha beta hydrolase
LIS79_11220	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LIS79_11230	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
LIS79_11235	COG2188	Transcriptional regulator
LIS79_11240	COG2723	6-phospho-beta-galactosidase activity
LIS79_11245	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
LIS79_11250	COG1447	Phosphotransferase system cellobiose-specific component IIA
LIS79_11255	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
LIS79_11265	COG1028	Short-chain dehydrogenase reductase Sdr
LIS79_11275	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
LIS79_11280	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
LIS79_11290	COG0706	membrane insertase activity
LIS79_11295	COG0835	chemotaxis
LIS79_11300	COG2195	Cleaves the N-terminal amino acid of tripeptides
LIS79_11305	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
LIS79_11310	COG0346	lactoylglutathione lyase activity
LIS79_11320	COG1376	ErfK ybiS ycfS ynhG family protein
LIS79_11325	COG4129	membrane
LIS79_11330	COG1126	abc transporter atp-binding protein
LIS79_11335	COG0765	amino acid transport
LIS79_11340	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LIS79_11350	COG1597	lipid kinase activity
LIS79_11360	COG0508	dehydrogenase complex catalyzes the overall conversion of
LIS79_11365	COG0022	dehydrogenase e1 component
LIS79_11370	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
LIS79_11375	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LIS79_11390	COG0280	phosphate acetyltransferase
LIS79_11395	COG3829	transcription factor binding
LIS79_11395	COG3290	protein histidine kinase activity
LIS79_11405	COG0584	glycerophosphoryl diester phosphodiesterase
LIS79_11410	COG0457	Tetratricopeptide repeat
LIS79_11415	COG0745	RESPONSE REGULATOR receiver
LIS79_11420	COG0750	zinc metalloprotease
LIS79_11425	COG0497	DNA recombination
LIS79_11430	COG1438	arginine binding
LIS79_11435	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
LIS79_11440	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
LIS79_11445	COG0142	geranyltranstransferase activity
LIS79_11450	COG1722	exodeoxyribonuclease VII activity
LIS79_11455	COG1570	exodeoxyribonuclease VII activity
LIS79_11460	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
LIS79_11465	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
LIS79_11470	COG1302	Protein conserved in bacteria
LIS79_11475	COG0439	Biotin carboxylase
LIS79_11480	COG0511	ligase activity, forming carbon-carbon bonds
LIS79_11520	COG3854	ATPases associated with a variety of cellular activities
LIS79_11530	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
LIS79_11535	COG0006	proline dipeptidase activity
LIS79_11540	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
LIS79_11550	COG3872	metal-dependent enzyme
LIS79_11560	COG1752	Esterase of the alpha-beta hydrolase superfamily
LIS79_11565	COG1321	iron dependent repressor
LIS79_11570	COG0095	Lipoate-protein ligase
LIS79_11575	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LIS79_11580	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
LIS79_11585	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
LIS79_11590	COG0404	The glycine cleavage system catalyzes the degradation of glycine
LIS79_11595	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
LIS79_11620	COG0681	Belongs to the peptidase S26 family
LIS79_11655	COG4970	Tfp pilus assembly protein FimT
LIS79_11660	COG4537	Required for transformation and DNA binding
LIS79_11665	COG1459	type II secretion system
LIS79_11670	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LIS79_11675	COG1366	Belongs to the anti-sigma-factor antagonist family
LIS79_11685	COG1393	Belongs to the ArsC family
LIS79_11695	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LIS79_11705	COG0011	TIGRFAM Protein of
LIS79_11710	COG2814	Major facilitator Superfamily
LIS79_11715	COG2866	Carboxypeptidase
LIS79_11720	COG1368	sulfuric ester hydrolase activity
LIS79_11725	COG1940	carbohydrate kinase activity
LIS79_11730	COG4483	Protein conserved in bacteria
LIS79_11735	COG0457	Tetratricopeptide repeat
LIS79_11735	COG0705	Rhomboid family
LIS79_11750	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
LIS79_11755	COG0267	Belongs to the bacterial ribosomal protein bL33 family
LIS79_11765	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
LIS79_11770	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
LIS79_11775	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
LIS79_11780	COG0581	inorganic phosphate transmembrane transporter activity
LIS79_11785	COG0573	inorganic phosphate transmembrane transporter activity
LIS79_11790	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
LIS79_11795	COG0768	penicillin binding
LIS79_11800	COG0477	Major facilitator Superfamily
LIS79_11805	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
LIS79_11810	COG2839	Protein conserved in bacteria
LIS79_11815	COG5521	maltodextrose utilization protein MalA
LIS79_11820	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LIS79_11825	COG1388	LysM domain
LIS79_11830	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
LIS79_11835	COG4709	membrane
LIS79_11840	COG5663	Belongs to the 5'(3')-deoxyribonucleotidase family
LIS79_11845	COG1940	carbohydrate kinase activity
LIS79_11850	COG0735	belongs to the Fur family
LIS79_11855	COG1108	ABC-type Mn2 Zn2 transport systems permease components
LIS79_11860	COG1121	(ABC) transporter
LIS79_11865	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
LIS79_11880	COG0513	Belongs to the DEAD box helicase family
LIS79_11890	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
LIS79_11895	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
LIS79_11900	COG2384	SAM-dependent methyltransferase
LIS79_11905	COG2010	Cytochrome c
LIS79_11910	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
LIS79_11915	COG0358	DNA primase activity
LIS79_11920	COG1671	Belongs to the UPF0178 family
LIS79_11925	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
LIS79_11930	COG0517	IMP dehydrogenase activity
LIS79_11935	COG0751	glycine-tRNA ligase activity
LIS79_11940	COG0752	glycyl-tRNA synthetase alpha subunit
LIS79_11945	COG1381	Involved in DNA repair and RecF pathway recombination
LIS79_11955	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
LIS79_11960	COG0295	cytidine deaminase activity
LIS79_11965	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
LIS79_11970	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
LIS79_11975	COG1480	7TM receptor with intracellular HD hydrolase
LIS79_11980	COG1702	phosphate starvation-inducible protein PhoH
LIS79_11985	COG0561	phosphatase activity
LIS79_12000	COG4864	UPF0365 protein
LIS79_12005	COG1030	water channel activity
LIS79_12010	COG1610	YqeY-like protein
LIS79_12020	COG1283	sodium-dependent phosphate transmembrane transporter activity
LIS79_12025	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
LIS79_12030	COG1385	rRNA (uridine-N3-)-methyltransferase activity
LIS79_12035	COG2264	protein methyltransferase activity
LIS79_12040	COG0484	heat shock protein binding
LIS79_12045	COG0443	Heat shock 70 kDa protein
LIS79_12050	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
LIS79_12055	COG1420	regulation of RNA biosynthetic process
LIS79_12060	COG0635	Involved in the biosynthesis of porphyrin-containing compound
LIS79_12065	COG0481	GTPase activity
LIS79_12075	COG0860	N-Acetylmuramoyl-L-alanine amidase
LIS79_12080	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
LIS79_12085	COG0268	Binds directly to 16S ribosomal RNA
LIS79_12090	COG1466	dna polymerase III delta subunit
LIS79_12100	COG0658	competence protein
LIS79_12100	COG2333	competence protein COMEC
LIS79_12105	COG2131	deaminase
LIS79_12110	COG1555	photosystem II stabilization
LIS79_12110	COG1596	polysaccharide export
LIS79_12115	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
LIS79_12120	COG2226	methyltransferase
LIS79_12125	COG0799	negative regulation of ribosome biogenesis
LIS79_12130	COG1713	HD superfamily hydrolase involved in NAD metabolism
LIS79_12135	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
LIS79_12140	COG1534	Rna-binding protein
LIS79_12145	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
LIS79_12150	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
LIS79_12155	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
LIS79_12170	COG2755	lipolytic protein G-D-S-L family
LIS79_12180	COG0457	Tetratricopeptide repeat
LIS79_12200	COG2186	Transcriptional regulator
LIS79_12220	COG3958	Transketolase
LIS79_12225	COG3959	Transketolase, thiamine diphosphate binding domain
LIS79_12245	COG0726	polysaccharide deacetylase
LIS79_12280	COG1131	(ABC) transporter
LIS79_12305	COG2160	L-arabinose isomerase activity
LIS79_12320	COG1609	Transcriptional regulator
LIS79_12330	COG1846	Transcriptional regulator
LIS79_12340	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
LIS79_12345	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
LIS79_12350	COG1733	regulation of RNA biosynthetic process
LIS79_12355	COG0657	acetylesterase activity
LIS79_12415	COG2602	Beta-lactamase
LIS79_12420	COG1960	acyl-CoA dehydrogenase activity
LIS79_12425	COG1126	abc transporter atp-binding protein
LIS79_12430	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LIS79_12435	COG0765	amino acid transport
LIS79_12445	COG3546	catalase activity
LIS79_12450	COG1063	alcohol dehydrogenase
LIS79_12460	COG1028	Short-chain dehydrogenase reductase Sdr
LIS79_12470	COG1115	amino acid carrier protein
LIS79_12475	COG0583	DNA-binding transcription factor activity
LIS79_12480	COG0842	Transport permease protein
LIS79_12485	COG0842	Transport permease protein
LIS79_12485	COG1511	domain protein
LIS79_12490	COG1131	(ABC) transporter
LIS79_12495	COG1063	alcohol dehydrogenase
LIS79_12500	COG2226	methyltransferase
LIS79_12525	COG0626	cystathionine gamma-synthase activity
LIS79_12530	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
LIS79_12535	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
LIS79_12540	COG2226	methyltransferase
LIS79_12555	COG0768	penicillin binding
LIS79_12560	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
LIS79_12565	COG0572	uridine kinase
LIS79_12570	COG0826	peptidase U32
LIS79_12575	COG0826	peptidase U32
LIS79_12580	COG4122	O-methyltransferase activity
LIS79_12585	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
LIS79_12590	COG0183	Belongs to the thiolase family
LIS79_12595	COG0318	PFAM AMP-dependent synthetase and ligase
LIS79_12600	COG1268	BioY protein
LIS79_12605	COG3906	Belongs to the UPF0473 family
LIS79_12610	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
LIS79_12615	COG4472	Bacterial protein of unknown function (DUF965)
LIS79_12620	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
LIS79_12625	COG0628	permease
LIS79_12630	COG1126	abc transporter atp-binding protein
LIS79_12635	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LIS79_12640	COG0765	amino acid transport
LIS79_12645	COG0765	amino acid transport
LIS79_12660	COG3881	PFAM PRC-barrel domain
LIS79_12665	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
LIS79_12670	COG0457	Tetratricopeptide repeat
LIS79_12675	COG0482	sulfurtransferase activity
LIS79_12680	COG1104	cysteine desulfurase activity
LIS79_12685	COG1959	2 iron, 2 sulfur cluster binding
LIS79_12690	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
LIS79_12695	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
LIS79_12710	COG0124	histidyl-tRNA synthetase
LIS79_12720	COG0860	N-Acetylmuramoyl-L-alanine amidase
LIS79_12720	COG3103	Sh3 type 3 domain protein
LIS79_12720	COG4991	sh3 domain protein
LIS79_12725	COG1490	D-aminoacyl-tRNA deacylase activity
LIS79_12730	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
LIS79_12735	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
LIS79_12740	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
LIS79_12740	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
LIS79_12745	COG5416	Lipopolysaccharide assembly protein A domain
LIS79_12750	COG0490	domain, Protein
LIS79_12755	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LIS79_12755	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LIS79_12765	COG2244	polysaccharide biosynthetic process
LIS79_12770	COG2323	membrane
LIS79_12780	COG1862	Preprotein translocase
LIS79_12785	COG0343	queuine tRNA-ribosyltransferase activity
LIS79_12790	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
LIS79_12800	COG2255	four-way junction helicase activity
LIS79_12805	COG0632	four-way junction helicase activity
LIS79_12815	COG2112	serine threonine protein kinase
LIS79_12830	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
LIS79_12845	COG1388	LysM domain
LIS79_12850	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
LIS79_12855	COG0157	Belongs to the NadC ModD family
LIS79_12860	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
LIS79_12865	COG1104	cysteine desulfurase activity
LIS79_12870	COG1827	regulation of RNA biosynthetic process
LIS79_12875	COG0077	Prephenate dehydratase
LIS79_12880	COG4492	Belongs to the UPF0735 family
LIS79_12885	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
LIS79_12890	COG3290	protein histidine kinase activity
LIS79_12895	COG0211	Belongs to the bacterial ribosomal protein bL27 family
LIS79_12900	COG2868	ribosomal protein
LIS79_12905	COG0261	This protein binds to 23S rRNA in the presence of protein L20
LIS79_12910	COG1994	Peptidase M50
LIS79_12915	COG0739	heme binding
LIS79_12920	COG2894	cell division
LIS79_12925	COG0850	regulation of cytokinetic process
LIS79_12930	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
LIS79_12940	COG1077	Cell shape determining protein MreB Mrl
LIS79_12945	COG2003	Belongs to the UPF0758 family
LIS79_12950	COG0424	maF-like protein
LIS79_12965	COG0285	dihydrofolate synthase activity
LIS79_12970	COG0525	valine-tRNA ligase activity
LIS79_12980	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
LIS79_12985	COG1388	LysM domain
LIS79_12990	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
LIS79_12995	COG0113	porphobilinogen synthase activity
LIS79_13000	COG1587	Uroporphyrinogen-III synthase
LIS79_13005	COG0181	hydroxymethylbilane synthase activity
LIS79_13010	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
LIS79_13015	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
LIS79_13025	COG0218	Necessary for normal cell division and for the maintenance of normal septation
LIS79_13030	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
LIS79_13035	COG0470	DNA polymerase III
LIS79_13035	COG1067	ATP-dependent peptidase activity
LIS79_13040	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
LIS79_13045	COG0544	peptidyl-prolyl cis-trans isomerase activity
LIS79_13050	COG0457	Tetratricopeptide repeat
LIS79_13050	COG1477	protein flavinylation
LIS79_13055	COG0066	3-isopropylmalate dehydratase activity
LIS79_13060	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
LIS79_13065	COG0473	3-isopropylmalate dehydrogenase activity
LIS79_13070	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
LIS79_13075	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
LIS79_13080	COG0440	acetolactate synthase activity
LIS79_13085	COG0028	Belongs to the TPP enzyme family
LIS79_13090	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
LIS79_13095	COG2706	6-phosphogluconolactonase activity
LIS79_13100	COG3339	Conserved Protein
LIS79_13105	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
LIS79_13110	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LIS79_13115	COG1696	Membrane protein involved in D-alanine export
LIS79_13120	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
LIS79_13165	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
LIS79_13200	COG0622	Phosphoesterase
LIS79_13205	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
LIS79_13210	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
LIS79_13215	COG5401	PFAM Sporulation and spore germination
LIS79_13220	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
LIS79_13225	COG1846	Transcriptional regulator
LIS79_13230	COG2197	response regulator
LIS79_13235	COG2851	Citrate transporter
LIS79_13240	COG0583	DNA-binding transcription factor activity
LIS79_13245	COG2828	Protein conserved in bacteria
LIS79_13255	COG0824	Thioesterase
LIS79_13260	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
LIS79_13265	COG1053	succinate dehydrogenase
LIS79_13275	COG1719	4-vinyl reductase, 4VR
LIS79_13280	COG0527	aspartate kinase activity
LIS79_13285	COG0322	excinuclease ABC activity
LIS79_13290	COG3118	belongs to the thioredoxin family
LIS79_13295	COG3534	alpha-L-arabinofuranosidase
LIS79_13300	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
LIS79_13305	COG2086	electron transfer activity
LIS79_13310	COG1024	Enoyl-CoA hydratase
LIS79_13315	COG1309	transcriptional regulator
LIS79_13320	COG0318	PFAM AMP-dependent synthetase and ligase
LIS79_13330	COG3766	membrane
LIS79_13335	COG1193	negative regulation of DNA recombination
LIS79_13340	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
LIS79_13340	COG1796	DNA polymerase
LIS79_13345	COG1286	toxin biosynthetic process
LIS79_13350	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
LIS79_13355	COG1039	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
LIS79_13360	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LIS79_13360	COG0072	phenylalanine-tRNA ligase activity
LIS79_13365	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
LIS79_13370	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LIS79_13380	COG1966	Carbon starvation protein
LIS79_13385	COG1363	Peptidase, m42
LIS79_13395	COG3326	Membrane
LIS79_13400	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
LIS79_13405	COG0291	Belongs to the bacterial ribosomal protein bL35 family
LIS79_13410	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
LIS79_13420	COG1011	Hydrolase
LIS79_13430	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
LIS79_13440	COG0398	Pfam SNARE associated Golgi protein
LIS79_13445	COG1484	DNA-dependent DNA replication
LIS79_13450	COG3611	Membrane attachment protein
LIS79_13455	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
LIS79_13465	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
LIS79_13470	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
LIS79_13475	COG0237	dephospho-CoA kinase activity
LIS79_13480	COG1971	Probably functions as a manganese efflux pump
LIS79_13485	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
LIS79_13490	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LIS79_13490	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LIS79_13495	COG5002	protein histidine kinase activity
LIS79_13500	COG0745	RESPONSE REGULATOR receiver
LIS79_13505	COG0039	L-malate dehydrogenase activity
LIS79_13510	COG0538	isocitrate dehydrogenase activity
LIS79_13515	COG0372	Belongs to the citrate synthase family
LIS79_13520	COG2707	UPF0756 membrane protein
LIS79_13525	COG0628	permease
LIS79_13530	COG3030	protein affecting phage T7 exclusion by the F plasmid
LIS79_13540	COG0205	6-phosphofructokinase activity
LIS79_13545	COG0825	malonyl-CoA metabolic process
LIS79_13550	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
LIS79_13555	COG0281	malic enzyme
LIS79_13560	COG0587	DNA-directed DNA polymerase activity
LIS79_13580	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
LIS79_13595	COG4109	DRTGG domain
LIS79_13600	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
LIS79_13605	COG1028	Short-chain dehydrogenase reductase Sdr
LIS79_13615	COG0165	Argininosuccinate lyase
LIS79_13620	COG0137	argininosuccinate synthase activity
LIS79_13625	COG0521	Mo-molybdopterin cofactor biosynthetic process
LIS79_13630	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
LIS79_13635	COG0827	DNA restriction-modification system
LIS79_13640	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
LIS79_13645	COG3874	Sporulation protein YtfJ
LIS79_13655	COG1714	RDD family
LIS79_13660	COG0616	signal peptide processing
LIS79_13665	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
LIS79_13675	COG3239	Fatty acid desaturase
LIS79_13680	COG4585	Histidine kinase
LIS79_13685	COG2197	response regulator
LIS79_13690	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
LIS79_13695	COG0745	RESPONSE REGULATOR receiver
LIS79_13700	COG2205	protein histidine kinase activity
LIS79_13705	COG1136	(ABC) transporter
LIS79_13710	COG0577	efflux transmembrane transporter activity
LIS79_13715	COG0402	S-adenosylhomocysteine deaminase activity
LIS79_13720	COG2249	NAD(P)H dehydrogenase (quinone) activity
LIS79_13730	COG1279	arginine transmembrane transporter activity
LIS79_13735	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
LIS79_13745	COG0301	tRNA thio-modification
LIS79_13750	COG1104	cysteine desulfurase activity
LIS79_13755	COG1114	Component of the transport system for branched-chain amino acids
LIS79_13760	COG1114	Component of the transport system for branched-chain amino acids
LIS79_13765	COG4477	modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization
LIS79_13770	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
LIS79_13775	COG1309	transcriptional regulator
LIS79_13780	COG1956	GAF domain-containing protein
LIS79_13785	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
LIS79_13800	COG1335	isochorismatase
LIS79_13810	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
LIS79_13815	COG2329	Antibiotic biosynthesis monooxygenase
LIS79_13820	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
LIS79_13825	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
LIS79_13830	COG0454	-acetyltransferase
LIS79_13835	COG0517	IMP dehydrogenase activity
LIS79_13840	COG0123	including yeast histone deacetylase and acetoin utilization protein
LIS79_13845	COG1609	Transcriptional regulator
LIS79_13850	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
LIS79_13850	COG1605	Chorismate mutase
LIS79_13855	COG3118	belongs to the thioredoxin family
LIS79_13860	COG4980	gas vesicle protein
LIS79_13865	COG4768	protein containing a divergent version of the methyl-accepting chemotaxis-like domain
LIS79_13870	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
LIS79_13875	COG1674	ftsk spoiiie
LIS79_13880	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LIS79_13885	COG4848	Belongs to the UPF0354 family
LIS79_13890	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LIS79_13905	COG1363	Peptidase, m42
LIS79_13910	COG5584	Small secreted protein
LIS79_13915	COG0281	malic enzyme
LIS79_13920	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LIS79_13925	COG0220	tRNA (guanine-N7-)-methyltransferase activity
LIS79_13935	COG0510	thiamine kinase activity
LIS79_13940	COG1597	lipid kinase activity
LIS79_13950	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
LIS79_13955	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
LIS79_13960	COG3340	Belongs to the peptidase S51 family
LIS79_13965	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LIS79_13970	COG2252	PERMEase
LIS79_13975	COG1349	DNA-binding transcription factor activity
LIS79_13980	COG1187	pseudouridine synthase activity
LIS79_13985	COG2244	polysaccharide biosynthetic process
LIS79_13990	COG2081	HI0933 family
LIS79_14000	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
LIS79_14005	COG3196	Protein conserved in bacteria
LIS79_14015	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LIS79_14020	COG5578	integral membrane protein
LIS79_14025	COG0673	inositol 2-dehydrogenase activity
LIS79_14030	COG1653	transport
LIS79_14035	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
LIS79_14040	COG4209	transmembrane transport
LIS79_14045	COG2207	Transcriptional regulator
LIS79_14050	COG1733	regulation of RNA biosynthetic process
LIS79_14055	COG2814	Major facilitator Superfamily
LIS79_14060	COG0656	L-ascorbic acid biosynthetic process
LIS79_14065	COG1653	transport
LIS79_14070	COG0395	ABC-type sugar transport system, permease component
LIS79_14075	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LIS79_14080	COG1073	alpha beta
LIS79_14085	COG0495	leucyl-tRNA aminoacylation
LIS79_14095	COG2202	Pas domain
LIS79_14095	COG1366	Belongs to the anti-sigma-factor antagonist family
LIS79_14100	COG2433	Pfam Transposase IS66
LIS79_14105	COG0577	efflux transmembrane transporter activity
LIS79_14110	COG1136	(ABC) transporter
LIS79_14120	COG1131	(ABC) transporter
LIS79_14125	COG1725	Transcriptional regulator
LIS79_14145	COG1242	4 iron, 4 sulfur cluster binding
LIS79_14150	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
LIS79_14155	COG4326	sporulation control protein
LIS79_14165	COG2267	carboxylic ester hydrolase activity
LIS79_14170	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
LIS79_14175	COG0367	asparagine synthase
LIS79_14180	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
LIS79_14185	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
LIS79_14195	COG1506	peptidase
LIS79_14200	COG1233	COG1233 Phytoene dehydrogenase and related
LIS79_14220	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
LIS79_14225	COG1116	anion transmembrane transporter activity
LIS79_14230	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LIS79_14235	COG0494	nUDIX hydrolase
LIS79_14240	COG2310	stress, protein
LIS79_14255	COG4824	toxin secretion phage lysis holin
LIS79_14265	COG0783	Belongs to the Dps family
LIS79_14280	COG1854	S-ribosylhomocysteine lyase activity
LIS79_14285	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
LIS79_14290	COG0288	reversible hydration of carbon dioxide
LIS79_14295	COG3443	Belongs to the bacterial solute-binding protein 9 family
LIS79_14295	COG0803	Belongs to the bacterial solute-binding protein 9 family
LIS79_14305	COG1271	oxidase subunit
LIS79_14310	COG1294	oxidase, subunit
LIS79_14325	COG4948	Mandelate Racemase Muconate Lactonizing
LIS79_14330	COG0318	PFAM AMP-dependent synthetase and ligase
LIS79_14335	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
LIS79_14340	COG0596	Alpha beta hydrolase
LIS79_14345	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
LIS79_14350	COG1169	isochorismate synthase
LIS79_14355	COG1575	Belongs to the MenA family. Type 1 subfamily
LIS79_14360	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
LIS79_14490	COG3859	Proton-coupled thiamine transporter YuaJ
LIS79_14495	COG1247	-acetyltransferase
LIS79_14500	COG3339	Conserved Protein
LIS79_14505	COG0772	Belongs to the SEDS family
LIS79_14510	COG0772	Belongs to the SEDS family
LIS79_14515	COG2268	Band 7 protein
LIS79_14520	COG1585	Membrane protein implicated in regulation of membrane protease activity
LIS79_14525	COG2318	DinB family
LIS79_14530	COG1454	alcohol dehydrogenase
LIS79_14535	COG1012	belongs to the aldehyde dehydrogenase family
LIS79_14540	COG1510	regulation of RNA biosynthetic process
LIS79_14555	COG3409	Peptidoglycan-binding domain 1 protein
LIS79_14555	COG5632	N-Acetylmuramoyl-L-alanine amidase
LIS79_14610	COG3778	Protein conserved in bacteria
LIS79_14615	COG3299	homolog of phage Mu protein gp47
LIS79_14620	COG3628	GPW Gp25 family protein
LIS79_14630	COG4193	domain, Protein
LIS79_14635	COG1652	LysM domain
LIS79_14640	COG3953	SLT domain
LIS79_14640	COG5280	Phage tail tape measure protein TP901
LIS79_14640	COG5280	Phage tail tape measure protein TP901
LIS79_14640	COG3953	SLT domain
LIS79_14695	COG4653	Phage capsid family
LIS79_14700	COG0338	D12 class N6 adenine-specific DNA methyltransferase
LIS79_14705	COG5518	Phage portal protein
LIS79_14710	COG1783	phage Terminase large subunit
LIS79_14715	COG5484	DNA packaging
LIS79_14720	COG1595	DNA-templated transcription, initiation
LIS79_14730	COG4570	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC
LIS79_14750	COG1396	sequence-specific DNA binding
LIS79_14760	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
LIS79_14775	COG0628	permease
LIS79_14785	COG0673	inositol 2-dehydrogenase activity
LIS79_14790	COG0693	protein deglycase activity
LIS79_14795	COG0840	transmembrane signaling receptor activity
LIS79_14800	COG0840	transmembrane signaling receptor activity
LIS79_14805	COG0840	transmembrane signaling receptor activity
LIS79_14810	COG0840	transmembrane signaling receptor activity
LIS79_14825	COG2070	2-Nitropropane dioxygenase
LIS79_14830	COG0432	Pfam Uncharacterised protein family UPF0047
LIS79_14835	COG1253	flavin adenine dinucleotide binding
LIS79_14840	COG2738	Putative neutral zinc metallopeptidase
LIS79_14850	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
LIS79_14865	COG0166	Belongs to the GPI family
LIS79_14870	COG1979	alcohol dehydrogenase
LIS79_14875	COG1979	alcohol dehydrogenase
LIS79_14880	COG2155	Conserved Protein
LIS79_14885	COG1098	S1 RNA binding domain
LIS79_14890	COG0436	Aminotransferase
LIS79_14895	COG1522	sequence-specific DNA binding
LIS79_14900	COG2267	carboxylic ester hydrolase activity
LIS79_14910	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
LIS79_14915	COG2205	protein histidine kinase activity
LIS79_14930	COG5018	Exonuclease
LIS79_14935	COG2814	Major facilitator Superfamily
LIS79_14940	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LIS79_14945	COG3011	Protein conserved in bacteria
LIS79_14955	COG3290	protein histidine kinase activity
LIS79_14960	COG4565	transcriptional regulatory protein
LIS79_14965	COG1744	ABC transporter substrate-binding protein PnrA-like
LIS79_14970	COG3845	ABC transporter
LIS79_14975	COG4603	Belongs to the binding-protein-dependent transport system permease family
LIS79_14980	COG1079	Belongs to the binding-protein-dependent transport system permease family
LIS79_14985	COG3493	citrate carrier protein
LIS79_14995	COG2111	Na H antiporter
LIS79_14995	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
LIS79_15000	COG2111	Na H antiporter
LIS79_15005	COG1006	Multisubunit Na H antiporter MnhC subunit
LIS79_15010	COG0651	ATP synthesis coupled electron transport
LIS79_15015	COG1863	multisubunit Na H antiporter MnhE subunit
LIS79_15020	COG2212	antiporter activity
LIS79_15025	COG1320	monovalent cation:proton antiporter activity
LIS79_15030	COG2050	protein possibly involved in aromatic compounds catabolism
LIS79_15035	COG2197	response regulator
LIS79_15040	COG4585	Histidine kinase
LIS79_15050	COG0142	geranyltranstransferase activity
LIS79_15065	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
LIS79_15070	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
LIS79_15075	COG1335	isochorismatase
LIS79_15080	COG5506	Protein of unknown function (DUF1694)
LIS79_15100	COG0628	permease
LIS79_15115	COG1418	mRNA catabolic process
LIS79_15120	COG1028	Short-chain dehydrogenase reductase Sdr
LIS79_15130	COG1511	domain protein
LIS79_15135	COG0433	COG0433 Predicted ATPase
LIS79_15135	COG1674	ftsk spoiiie
LIS79_15140	COG4499	WXG100 protein secretion system (Wss), protein YukC
LIS79_15145	COG5417	Belongs to the EsaB family
LIS79_15150	COG4842	Belongs to the WXG100 family
LIS79_15155	COG2508	Transcriptional regulator
LIS79_15155	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
LIS79_15160	COG0686	Belongs to the AlaDH PNT family
LIS79_15165	COG1268	BioY protein
LIS79_15170	COG2056	Na+-H+ antiporter family
LIS79_15175	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
LIS79_15185	COG1963	PFAM Acid phosphatase vanadium-dependent haloperoxidase related
LIS79_15190	COG3584	3D domain protein
LIS79_15205	COG1252	NADH dehydrogenase
LIS79_15210	COG0492	ferredoxin-NADP+ reductase activity
LIS79_15235	COG0316	Belongs to the HesB IscA family
LIS79_15240	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
LIS79_15245	COG4844	belongs to the
LIS79_15250	COG1252	NADH dehydrogenase
LIS79_15260	COG4837	Protein of unknown function (DUF1462)
LIS79_15270	COG4946	Tricorn protease homolog
LIS79_15270	COG1506	peptidase
LIS79_15270	COG0823	Involved in the tonB-independent uptake of proteins
LIS79_15275	COG0083	homoserine kinase activity
LIS79_15280	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
LIS79_15285	COG0460	homoserine dehydrogenase
LIS79_15290	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
LIS79_15295	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
LIS79_15300	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
LIS79_15305	COG0647	UMP catabolic process
LIS79_15310	COG2445	Protein of unknown function DUF86
LIS79_15315	COG4470	Protein conserved in bacteria
LIS79_15325	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
LIS79_15330	COG0739	heme binding
LIS79_15350	COG3377	Domain of unknown function (DUF1805)
LIS79_15355	COG0737	Belongs to the 5'-nucleotidase family
LIS79_15360	COG1801	Protein of unknown function DUF72
LIS79_15365	COG2508	Transcriptional regulator
LIS79_15370	COG2140	Oxalate decarboxylase
LIS79_15375	COG2814	Major facilitator Superfamily
LIS79_15380	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
LIS79_15385	COG2356	endonuclease I
LIS79_15395	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LIS79_15400	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LIS79_15405	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
LIS79_15425	COG0642	Histidine kinase
LIS79_15425	COG5002	protein histidine kinase activity
LIS79_15430	COG0745	RESPONSE REGULATOR receiver
LIS79_15435	COG2311	Membrane
LIS79_15445	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
LIS79_15460	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
LIS79_15470	COG1090	epimerase
LIS79_15475	COG1309	transcriptional regulator
LIS79_15485	COG0719	Fe-S assembly protein
LIS79_15490	COG0822	iron-sulfur transferase activity
LIS79_15495	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
LIS79_15500	COG0719	Fe-S assembly protein
LIS79_15505	COG0396	ATPase activity
LIS79_15515	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
LIS79_15520	COG1464	Belongs to the NlpA lipoprotein family
LIS79_15525	COG2011	ABC-type metal ion transport system permease component
LIS79_15530	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
LIS79_15540	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LIS79_15545	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
LIS79_15555	COG0509	glycine decarboxylation via glycine cleavage system
LIS79_15560	COG1393	Belongs to the ArsC family
LIS79_15565	COG1960	acyl-CoA dehydrogenase activity
LIS79_15570	COG0183	Belongs to the thiolase family
LIS79_15575	COG1024	Enoyl-CoA hydratase
LIS79_15575	COG1250	3-hydroxyacyl-CoA dehydrogenase
LIS79_15590	COG5577	PFAM Coat F domain
LIS79_15600	COG1120	ATPase activity
LIS79_15610	COG1028	Short-chain dehydrogenase reductase Sdr
LIS79_15615	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LIS79_15620	COG0745	RESPONSE REGULATOR receiver
LIS79_15625	COG2205	protein histidine kinase activity
LIS79_15625	COG2770	Histidine kinase
LIS79_15635	COG1309	transcriptional regulator
LIS79_15640	COG0114	fumarate hydratase activity
LIS79_15650	COG0697	spore germination
LIS79_15655	COG0814	amino acid
LIS79_15670	COG2197	response regulator
LIS79_15675	COG4585	Histidine kinase
LIS79_15680	COG4758	membrane
LIS79_15690	COG1842	Phage shock protein A
LIS79_15695	COG4758	membrane
LIS79_15700	COG2096	Adenosyltransferase
LIS79_15705	COG1028	Short-chain dehydrogenase reductase Sdr
LIS79_15710	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
LIS79_15720	COG3604	Transcriptional regulator
LIS79_15735	COG1454	alcohol dehydrogenase
LIS79_15740	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LIS79_15745	COG1120	ATPase activity
LIS79_15750	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LIS79_15755	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
LIS79_15765	COG2721	sulfolactate sulfo-lyase activity
LIS79_15770	COG0246	Mannitol dehydrogenase
LIS79_15775	COG1609	Transcriptional regulator
LIS79_15780	COG1904	glucuronate isomerase
LIS79_15785	COG2205	protein histidine kinase activity
LIS79_15790	COG0745	RESPONSE REGULATOR receiver
LIS79_15795	COG1120	ATPase activity
LIS79_15800	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LIS79_15805	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LIS79_15810	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
LIS79_15815	COG0531	amino acid
LIS79_15830	COG1988	membrane-bound metal-dependent
LIS79_15835	COG1368	sulfuric ester hydrolase activity
LIS79_15840	COG0725	ABC transporter, periplasmic molybdate-binding protein
LIS79_15845	COG4149	molybdate abc transporter
LIS79_15850	COG0656	L-ascorbic acid biosynthetic process
LIS79_15855	COG1940	carbohydrate kinase activity
LIS79_15860	COG0025	NhaP-type Na H and K H
LIS79_15865	COG2860	membrane
LIS79_15870	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
LIS79_15875	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
LIS79_15880	COG2217	Heavy metal translocating P-type atpase
LIS79_15885	COG1121	(ABC) transporter
LIS79_15890	COG1108	ABC-type Mn2 Zn2 transport systems permease components
LIS79_15895	COG0803	Belongs to the bacterial solute-binding protein 9 family
LIS79_15905	COG3226	Transcriptional regulator
LIS79_15910	COG0784	Response regulator, receiver
LIS79_15915	COG4191	Histidine kinase
LIS79_15920	COG1027	Aspartate ammonia-lyase
LIS79_15930	COG2217	Heavy metal translocating P-type atpase
LIS79_15935	COG2608	mercury ion transmembrane transporter activity
LIS79_15940	COG1937	Protein conserved in bacteria
LIS79_15985	COG0860	N-Acetylmuramoyl-L-alanine amidase
LIS79_15990	COG4824	toxin secretion phage lysis holin
LIS79_16015	COG1705	Flagellar rod assembly protein muramidase FlgJ
LIS79_16025	COG3953	SLT domain
LIS79_16025	COG5412	phage tail tape measure protein
LIS79_16085	COG1802	Transcriptional regulator
LIS79_16085	COG4626	Terminase
LIS79_16120	COG0582	viral genome integration into host DNA
LIS79_16125	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
LIS79_16245	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
LIS79_16250	COG0557	exoribonuclease II activity
LIS79_16255	COG1647	Serine aminopeptidase, S33
LIS79_16260	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
LIS79_16265	COG2002	toxin-antitoxin pair type II binding
LIS79_16270	COG1476	TRANSCRIPTIONal
LIS79_16275	COG1396	sequence-specific DNA binding
LIS79_16280	COG1396	sequence-specific DNA binding
LIS79_16285	COG1733	regulation of RNA biosynthetic process
LIS79_16290	COG1174	glycine betaine transport
LIS79_16295	COG1732	Glycine betaine
LIS79_16300	COG1174	glycine betaine transport
LIS79_16305	COG1125	glycine betaine transport
LIS79_16305	COG0517	IMP dehydrogenase activity
LIS79_16310	COG1510	regulation of RNA biosynthetic process
LIS79_16315	COG2095	MarC family integral membrane protein
LIS79_16325	COG0456	acetyltransferase
LIS79_16345	COG1131	(ABC) transporter
LIS79_16355	COG0148	phosphopyruvate hydratase activity
LIS79_16360	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
LIS79_16365	COG0149	triose-phosphate isomerase activity
LIS79_16370	COG0126	phosphoglycerate kinase activity
LIS79_16375	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
LIS79_16380	COG2390	Transcriptional regulator
LIS79_16385	COG0833	amino acid
LIS79_16390	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
LIS79_16395	COG3829	transcription factor binding
LIS79_16400	COG2186	Transcriptional regulator
LIS79_16405	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
LIS79_16415	COG0534	Mate efflux family protein
LIS79_16420	COG4608	Belongs to the ABC transporter superfamily
LIS79_16425	COG0444	Belongs to the ABC transporter superfamily
LIS79_16430	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LIS79_16435	COG0601	transmembrane transport
LIS79_16440	COG0747	negative chemotaxis
LIS79_16445	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
LIS79_16450	COG0110	maltose O-acetyltransferase activity
LIS79_16455	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
LIS79_16460	COG2244	polysaccharide biosynthetic process
LIS79_16465	COG5039	Polysaccharide pyruvyl transferase
LIS79_16470	COG1216	Glycosyl transferase, family 2
LIS79_16480	COG0438	transferase activity, transferring glycosyl groups
LIS79_16485	COG1215	transferase activity, transferring glycosyl groups
LIS79_16490	COG0438	transferase activity, transferring glycosyl groups
LIS79_16495	COG1086	Polysaccharide biosynthesis protein
LIS79_16500	COG0489	protein tyrosine kinase activity
LIS79_16505	COG3944	biosynthesis protein
LIS79_16510	COG1396	sequence-specific DNA binding
LIS79_16520	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
LIS79_16525	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LIS79_16530	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LIS79_16535	COG0726	polysaccharide deacetylase
LIS79_16540	COG0488	(ABC) transporter
LIS79_16545	COG1819	glycosyl
LIS79_16550	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
LIS79_16565	COG0740	serine-type endopeptidase activity
LIS79_16570	COG1611	Belongs to the LOG family
LIS79_16575	COG1694	Mazg nucleotide pyrophosphohydrolase
LIS79_16580	COG0659	secondary active sulfate transmembrane transporter activity
LIS79_16585	COG0288	reversible hydration of carbon dioxide
LIS79_16590	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
LIS79_16600	COG2162	N-hydroxyarylamine O-acetyltransferase activity
LIS79_16605	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
LIS79_16610	COG1481	regulation of sporulation
LIS79_16615	COG0391	Required for morphogenesis under gluconeogenic growth conditions
LIS79_16620	COG1660	Displays ATPase and GTPase activities
LIS79_16625	COG1051	belongs to the nudix hydrolase family
LIS79_16630	COG0492	ferredoxin-NADP+ reductase activity
LIS79_16635	COG0791	NLP P60 protein
LIS79_16635	COG3883	PFAM NLP P60 protein
LIS79_16640	COG0457	Tetratricopeptide repeat
LIS79_16645	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
LIS79_16645	COG0140	phosphoribosyl-ATP diphosphatase activity
LIS79_16650	COG0107	imidazoleglycerol-phosphate synthase activity
LIS79_16655	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
LIS79_16660	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
LIS79_16665	COG0131	Imidazoleglycerol-phosphate dehydratase
LIS79_16670	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
LIS79_16675	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
LIS79_16680	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
LIS79_16685	COG4990	cell redox homeostasis
LIS79_16695	COG2910	NAD(P)H-binding
LIS79_16700	COG1959	2 iron, 2 sulfur cluster binding
LIS79_16705	COG0110	maltose O-acetyltransferase activity
LIS79_16710	COG0546	phosphoglycolate phosphatase activity
LIS79_16715	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
LIS79_16720	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
LIS79_16725	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
LIS79_16730	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
LIS79_16735	COG0363	glucosamine-6-phosphate deaminase activity
LIS79_16740	COG2188	Transcriptional regulator
LIS79_16745	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
LIS79_16750	COG1950	PFAM Membrane protein of
LIS79_16755	COG1983	PspC domain protein
LIS79_16760	COG3595	metallopeptidase activity
LIS79_16775	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
LIS79_16785	COG4897	Protein conserved in bacteria
LIS79_16790	COG0574	Belongs to the PEP-utilizing enzyme family
LIS79_16790	COG3848	Pyruvate phosphate dikinase
LIS79_16795	COG1309	transcriptional regulator
LIS79_16800	COG2814	Major facilitator Superfamily
LIS79_16810	COG0745	RESPONSE REGULATOR receiver
LIS79_16815	COG5002	protein histidine kinase activity
LIS79_16830	COG0463	Glycosyl transferase, family 2
LIS79_16835	COG1113	amino acid transport
LIS79_16840	COG0778	Nitroreductase
LIS79_16845	COG1733	regulation of RNA biosynthetic process
LIS79_16850	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LIS79_16860	COG3409	Peptidoglycan-binding domain 1 protein
LIS79_16860	COG0793	Belongs to the peptidase S41A family
LIS79_16865	COG0730	response to heat
LIS79_16870	COG0791	NLP P60 protein
LIS79_16870	COG3883	PFAM NLP P60 protein
LIS79_16875	COG2177	Part of the ABC transporter FtsEX involved in
LIS79_16880	COG2884	Cell division ATP-binding protein ftsE
LIS79_16885	COG2010	Cytochrome c
LIS79_16890	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
LIS79_16910	COG0653	protein targeting
LIS79_16915	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
LIS79_16920	COG0840	transmembrane signaling receptor activity
LIS79_16935	COG1516	flagellar protein fliS
LIS79_16940	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
LIS79_16945	COG1334	flagellar protein FlaG
LIS79_16950	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
LIS79_16955	COG1699	Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum
LIS79_16965	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
LIS79_16970	COG1256	bacterial-type flagellum assembly
LIS79_16970	COG4786	Flagellar basal body rod
LIS79_16975	COG3418	PFAM FlgN family protein
LIS79_16990	COG1040	competence protein
LIS79_17000	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
LIS79_17005	COG1307	EDD domain protein, DegV family
LIS79_17010	COG2197	response regulator
LIS79_17015	COG4585	Histidine kinase
LIS79_17020	COG1739	Uncharacterized protein family UPF0029
LIS79_17025	COG1316	TRANSCRIPTIONal
LIS79_17030	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
LIS79_17035	COG0438	transferase activity, transferring glycosyl groups
LIS79_17040	COG1215	transferase activity, transferring glycosyl groups
LIS79_17045	COG3206	protein involved in exopolysaccharide biosynthesis
LIS79_17050	COG3307	-O-antigen
LIS79_17055	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LIS79_17060	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
LIS79_17065	COG0297	glycogen (starch) synthase activity
LIS79_17065	COG0438	transferase activity, transferring glycosyl groups
LIS79_17070	COG2244	polysaccharide biosynthetic process
LIS79_17085	COG0860	N-Acetylmuramoyl-L-alanine amidase
LIS79_17085	COG2247	cell wall binding repeat
LIS79_17090	COG0860	N-Acetylmuramoyl-L-alanine amidase
LIS79_17090	COG2247	cell wall binding repeat
LIS79_17095	COG2247	cell wall binding repeat
LIS79_17095	COG2385	sporulation resulting in formation of a cellular spore
LIS79_17105	COG1316	TRANSCRIPTIONal
LIS79_17110	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
LIS79_17115	COG1210	Utp--glucose-1-phosphate uridylyltransferase
LIS79_17120	COG1134	teichoic acid transport
LIS79_17125	COG1682	transport, permease protein
LIS79_17135	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
LIS79_17145	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
LIS79_17150	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
LIS79_17155	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
LIS79_17160	COG4193	domain, Protein
LIS79_17165	COG1482	cell wall glycoprotein biosynthetic process
LIS79_17175	COG1175	transmembrane transport
LIS79_17180	COG1653	transport
LIS79_17185	COG2197	response regulator
LIS79_17190	COG2972	Histidine kinase
LIS79_17200	COG0454	-acetyltransferase
LIS79_17205	COG0800	Aldolase
LIS79_17210	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LIS79_17215	COG1609	Transcriptional regulator
LIS79_17220	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
LIS79_17225	COG1028	Short-chain dehydrogenase reductase Sdr
LIS79_17230	COG0697	spore germination
LIS79_17235	COG0814	amino acid
LIS79_17250	COG2814	Major facilitator Superfamily
LIS79_17255	COG1316	TRANSCRIPTIONal
LIS79_17260	COG0561	phosphatase activity
LIS79_17265	COG0791	NLP P60 protein
LIS79_17275	COG2843	Capsule synthesis protein
LIS79_17285	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
LIS79_17290	COG0697	spore germination
LIS79_17305	COG1609	Transcriptional regulator
LIS79_17310	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LIS79_17315	COG1869	D-ribose catabolic process
LIS79_17320	COG1129	ABC transporter
LIS79_17325	COG1172	Belongs to the binding-protein-dependent transport system permease family
LIS79_17330	COG1879	ABC-type sugar transport system periplasmic component
LIS79_17335	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
LIS79_17340	COG0583	DNA-binding transcription factor activity
LIS79_17345	COG0028	Belongs to the TPP enzyme family
LIS79_17350	COG3527	Alpha-acetolactate decarboxylase
LIS79_17355	COG1522	sequence-specific DNA binding
LIS79_17360	COG2059	Chromate
LIS79_17365	COG2059	Chromate
LIS79_17370	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
LIS79_17380	COG4715	Zinc finger, swim domain protein
LIS79_17385	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
LIS79_17390	COG1366	Belongs to the anti-sigma-factor antagonist family
LIS79_17390	COG2202	Pas domain
LIS79_17395	COG0561	phosphatase activity
LIS79_17410	COG1970	mechanosensitive ion channel activity
LIS79_17415	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
LIS79_17420	COG0457	Tetratricopeptide repeat
LIS79_17425	COG4786	Flagellar basal body rod
LIS79_17430	COG4786	Flagellar basal body rod
LIS79_17435	COG1077	Cell shape determining protein MreB Mrl
LIS79_17440	COG1609	Transcriptional regulator
LIS79_17445	COG1846	Transcriptional regulator
LIS79_17450	COG2814	Major facilitator Superfamily
LIS79_17455	COG0671	phosphoesterase, PA-phosphatase related
LIS79_17460	COG0477	Major facilitator Superfamily
LIS79_17465	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LIS79_17470	COG0765	amino acid transport
LIS79_17475	COG1126	abc transporter atp-binding protein
LIS79_17480	COG0004	ammonium transporteR
LIS79_17485	COG0347	Belongs to the P(II) protein family
LIS79_17490	COG0739	heme binding
LIS79_17495	COG1247	-acetyltransferase
LIS79_17535	COG0267	Belongs to the bacterial ribosomal protein bL33 family
LIS79_17540	COG0523	cobalamin synthesis protein
LIS79_17545	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
LIS79_17550	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
LIS79_17555	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
LIS79_17560	COG2223	nitrite transmembrane transporter activity
LIS79_17565	COG0243	molybdopterin cofactor binding
LIS79_17570	COG2304	oxidoreductase activity
LIS79_17575	COG2304	oxidoreductase activity
LIS79_17580	COG2385	sporulation resulting in formation of a cellular spore
LIS79_17585	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
LIS79_17595	COG4836	Membrane
LIS79_17605	COG0355	proton-transporting ATP synthase activity, rotational mechanism
LIS79_17610	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
LIS79_17615	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
LIS79_17620	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
LIS79_17625	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
LIS79_17630	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
LIS79_17635	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
LIS79_17640	COG0356	it plays a direct role in the translocation of protons across the membrane
LIS79_17650	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
LIS79_17655	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
LIS79_17660	COG4475	Protein of unknown function (DUF436)
LIS79_17665	COG0698	ribose 5-phosphate isomerase
LIS79_17670	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
LIS79_17675	COG1971	Probably functions as a manganese efflux pump
LIS79_17680	COG0009	L-threonylcarbamoyladenylate synthase
LIS79_17685	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
LIS79_17700	COG2890	protein-(glutamine-N5) methyltransferase activity
LIS79_17705	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
LIS79_17710	COG0789	Transcriptional regulator
LIS79_17715	COG0679	Auxin Efflux Carrier
LIS79_17720	COG0281	malic enzyme
LIS79_17725	COG1435	thymidine kinase activity
LIS79_17730	COG0254	rRNA binding
LIS79_17735	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
LIS79_17740	COG1494	fructose-1,6-bisphosphatase
LIS79_17745	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
LIS79_17750	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
LIS79_17755	COG0191	fructose-bisphosphate aldolase activity
LIS79_17760	COG2204	response regulator
LIS79_17765	COG4821	SIS domain
LIS79_17770	COG0504	CTP synthase activity
LIS79_17775	COG3343	RNA polymerase activity
LIS79_17790	COG1960	acyl-CoA dehydrogenase activity
LIS79_17795	COG1960	acyl-CoA dehydrogenase activity
LIS79_17800	COG1250	3-hydroxyacyl-CoA dehydrogenase
LIS79_17805	COG0183	Belongs to the thiolase family
LIS79_17810	COG0247	lactate metabolic process
LIS79_17810	COG2181	nitrate reductase activity
LIS79_17815	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LIS79_17820	COG4294	response to UV
LIS79_17830	COG1619	proteins homologs of microcin C7 resistance protein MccF
LIS79_17845	COG1132	(ABC) transporter
LIS79_17850	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LIS79_17855	COG1619	proteins homologs of microcin C7 resistance protein MccF
LIS79_17860	COG0018	arginyl-trna synthetase
LIS79_17865	COG4506	Protein conserved in bacteria
LIS79_17875	COG0010	Belongs to the arginase family
LIS79_17880	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
LIS79_17885	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LIS79_17895	COG1994	Peptidase M50
LIS79_17900	COG1942	4-Oxalocrotonate Tautomerase
LIS79_17910	COG3465	dGTPase activity
LIS79_17915	COG1078	dGTPase activity
LIS79_17920	COG4844	belongs to the
LIS79_17970	COG5444	nuclease activity
LIS79_18000	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
LIS79_18010	COG0280	phosphate acetyltransferase
LIS79_18020	COG2814	Major facilitator Superfamily
LIS79_18025	COG1522	sequence-specific DNA binding
LIS79_18030	COG2814	Major facilitator Superfamily
LIS79_18035	COG0077	Prephenate dehydratase
LIS79_18040	COG1917	Cupin 2, conserved barrel domain protein
LIS79_18045	COG1028	Short-chain dehydrogenase reductase Sdr
LIS79_18050	COG0151	Belongs to the GarS family
LIS79_18055	COG0436	Aminotransferase
LIS79_18060	COG1028	Short-chain dehydrogenase reductase Sdr
LIS79_18065	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
LIS79_18070	COG1091	dTDP-4-dehydrorhamnose reductase activity
LIS79_18075	COG1088	dTDP-glucose 4,6-dehydratase activity
LIS79_18080	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
LIS79_18085	COG3980	spore coat polysaccharide biosynthesis protein
LIS79_18090	COG1861	Spore coat polysaccharide biosynthesis protein F CMP-KDO synthetase
LIS79_18095	COG2089	acid synthase
LIS79_18100	COG0456	acetyltransferase
LIS79_18105	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
LIS79_18110	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
LIS79_18115	COG0463	Glycosyl transferase, family 2
LIS79_18135	COG2363	Small membrane protein
LIS79_18140	COG2233	PERMEase
LIS79_18150	COG1012	belongs to the aldehyde dehydrogenase family
LIS79_18155	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
LIS79_18160	COG1216	Glycosyl transferase, family 2
LIS79_18170	COG0351	phosphomethylpyrimidine kinase
LIS79_18185	COG1621	beta-fructofuranosidase activity
LIS79_18190	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LIS79_18190	COG1263	PTS System
LIS79_18195	COG3711	transcriptional antiterminator
LIS79_18205	COG1404	Belongs to the peptidase S8 family
LIS79_18215	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
LIS79_18220	COG0778	Nitroreductase
LIS79_18225	COG0772	Belongs to the SEDS family
LIS79_18235	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
LIS79_18240	COG1845	cytochrome c oxidase, subunit III
LIS79_18245	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
LIS79_18250	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
LIS79_18260	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
LIS79_18265	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
LIS79_18270	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
LIS79_18285	COG2246	polysaccharide biosynthetic process
LIS79_18305	COG3162	membrane
LIS79_18310	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LIS79_18325	COG0352	thiamine-phosphate diphosphorylase activity
LIS79_18330	COG2145	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
LIS79_18335	COG0583	DNA-binding transcription factor activity
LIS79_18340	COG1380	Effector of murein hydrolase LrgA
LIS79_18345	COG1346	cytolysis
LIS79_18350	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
LIS79_18355	COG0346	lactoylglutathione lyase activity
LIS79_18365	COG0765	amino acid transport
LIS79_18370	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LIS79_18375	COG0457	Tetratricopeptide repeat
LIS79_18385	COG2357	RelA SpoT domain protein
LIS79_18390	COG1172	Belongs to the binding-protein-dependent transport system permease family
LIS79_18395	COG1129	ABC transporter
LIS79_18405	COG3420	alginic acid biosynthetic process
LIS79_18410	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
LIS79_18420	COG1486	melibiose metabolic process
LIS79_18425	COG1447	Phosphotransferase system cellobiose-specific component IIA
LIS79_18430	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
LIS79_18435	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
LIS79_18440	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
LIS79_18440	COG3711	transcriptional antiterminator
LIS79_18460	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
LIS79_18475	COG1595	DNA-templated transcription, initiation
LIS79_18485	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
LIS79_18490	COG4988	ABC transporter
LIS79_18495	COG1294	oxidase, subunit
LIS79_18500	COG1271	oxidase subunit
LIS79_18515	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LIS79_18520	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
LIS79_18525	COG4509	Sortase family
LIS79_18550	COG5386	Cell surface protein
LIS79_18555	COG5386	Cell surface protein
LIS79_18560	COG1733	regulation of RNA biosynthetic process
LIS79_18565	COG2514	catechol 2,3-dioxygenase activity
LIS79_18570	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
LIS79_18570	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
LIS79_18575	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LIS79_18575	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LIS79_18585	COG0726	polysaccharide deacetylase
LIS79_18590	COG1447	Phosphotransferase system cellobiose-specific component IIA
LIS79_18595	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
LIS79_18600	COG2723	6-phospho-beta-galactosidase activity
LIS79_18605	COG1312	Catalyzes the dehydration of D-mannonate
LIS79_18610	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
LIS79_18615	COG3711	transcriptional antiterminator
LIS79_18615	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
LIS79_18640	COG1757	Na H antiporter
LIS79_18645	COG1027	Aspartate ammonia-lyase
LIS79_18650	COG0252	asparaginase activity
LIS79_18655	COG1396	sequence-specific DNA binding
LIS79_18680	COG4842	Belongs to the WXG100 family
LIS79_18685	COG2195	Cleaves the N-terminal amino acid of tripeptides
LIS79_18700	COG1737	Transcriptional regulator
LIS79_18705	COG2084	Dehydrogenase
LIS79_18715	COG2610	gluconate transmembrane transporter activity
LIS79_18720	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
LIS79_18725	COG2723	6-phospho-beta-galactosidase activity
LIS79_18730	COG1263	PTS System
LIS79_18730	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LIS79_18730	COG2190	(PTS) system
LIS79_18735	COG3711	transcriptional antiterminator
LIS79_18740	COG3878	Protein conserved in bacteria
LIS79_18750	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
LIS79_18755	COG1122	ATPase activity
LIS79_18760	COG4721	ABC-type cobalt transport system, permease component
LIS79_18765	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
LIS79_18800	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
LIS79_18805	COG0778	Nitroreductase
LIS79_18810	COG1846	Transcriptional regulator
LIS79_18815	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
LIS79_18820	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
LIS79_18825	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
LIS79_18830	COG2390	Transcriptional regulator
LIS79_18840	COG2755	lipolytic protein G-D-S-L family
LIS79_18840	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
LIS79_18845	COG0477	Major facilitator Superfamily
LIS79_18850	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
LIS79_18855	COG2226	methyltransferase
LIS79_18865	COG0561	phosphatase activity
LIS79_18870	COG0789	Transcriptional regulator
LIS79_18875	COG0673	inositol 2-dehydrogenase activity
LIS79_18880	COG0840	transmembrane signaling receptor activity
LIS79_18885	COG1113	amino acid transport
LIS79_18890	COG4335	DNA alkylation repair
LIS79_18900	COG1070	Carbohydrate kinase
LIS79_18905	COG1737	Transcriptional regulator
LIS79_18945	COG0583	DNA-binding transcription factor activity
LIS79_18950	COG1609	Transcriptional regulator
LIS79_18955	COG2182	Extracellular solute-binding protein
LIS79_18960	COG1175	transmembrane transport
LIS79_18965	COG3833	ABC-type maltose transport systems, permease component
LIS79_18975	COG1874	Beta-galactosidase
LIS79_18980	COG2851	Citrate transporter
LIS79_18990	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
LIS79_18995	COG1131	(ABC) transporter
LIS79_19000	COG2824	Alkylphosphonate utilization operon protein PhnA
LIS79_19005	COG1929	Belongs to the glycerate kinase type-1 family
LIS79_19010	COG2610	gluconate transmembrane transporter activity
LIS79_19015	COG3835	regulator
LIS79_19020	COG1309	transcriptional regulator
LIS79_19025	COG2814	Major facilitator Superfamily
LIS79_19035	COG1136	(ABC) transporter
LIS79_19045	COG0457	Tetratricopeptide repeat
LIS79_19050	COG3711	transcriptional antiterminator
LIS79_19055	COG2723	6-phospho-beta-galactosidase activity
LIS79_19060	COG2190	(PTS) system
LIS79_19060	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LIS79_19060	COG1263	PTS System
LIS79_19085	COG0494	nUDIX hydrolase
LIS79_19100	COG1113	amino acid transport
LIS79_19105	COG1609	Transcriptional regulator
LIS79_19110	COG2814	Major facilitator Superfamily
LIS79_19115	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
LIS79_19120	COG2814	Major facilitator Superfamily
LIS79_19130	COG5444	nuclease activity
LIS79_19150	COG2723	6-phospho-beta-galactosidase activity
LIS79_19155	COG1263	PTS System
LIS79_19155	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LIS79_19155	COG2190	(PTS) system
LIS79_19160	COG2188	Transcriptional regulator
LIS79_19170	COG0384	phenazine biosynthesis protein PhzF
LIS79_19175	COG0583	DNA-binding transcription factor activity
LIS79_19195	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LIS79_19210	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LIS79_19225	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
LIS79_19235	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
LIS79_19245	COG4720	Psort location CytoplasmicMembrane, score
LIS79_19265	COG0456	acetyltransferase
LIS79_19270	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LIS79_19275	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
LIS79_19280	COG4853	Protein conserved in bacteria
LIS79_19285	COG4863	YycH protein
LIS79_19290	COG5002	protein histidine kinase activity
LIS79_19295	COG0745	RESPONSE REGULATOR receiver
LIS79_19320	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
LIS79_19330	COG2311	Membrane
LIS79_19335	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
LIS79_19340	COG1309	transcriptional regulator
LIS79_19345	COG2124	cytochrome p450
LIS79_19350	COG0346	lactoylglutathione lyase activity
LIS79_19355	COG0305	Participates in initiation and elongation during chromosome replication
LIS79_19370	COG2819	hydrolase of the alpha beta superfamily
LIS79_19375	COG2207	Transcriptional regulator
LIS79_19375	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
LIS79_19380	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
LIS79_19385	COG2819	hydrolase of the alpha beta superfamily
LIS79_19390	COG3093	addiction module antidote protein HigA
LIS79_19395	COG2807	transmembrane transport
LIS79_19400	COG0359	binds to the 23S rRNA
LIS79_19405	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
LIS79_19410	COG4241	membrane
LIS79_19415	COG1227	inorganic diphosphatase activity
LIS79_19425	COG1595	DNA-templated transcription, initiation
LIS79_19435	COG0753	catalase activity
LIS79_19440	COG0655	NAD(P)H dehydrogenase (quinone) activity
LIS79_19445	COG0400	carboxylic ester hydrolase activity
LIS79_19450	COG0346	lactoylglutathione lyase activity
LIS79_19455	COG1174	glycine betaine transport
LIS79_19460	COG0517	IMP dehydrogenase activity
LIS79_19460	COG1125	glycine betaine transport
LIS79_19465	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
LIS79_19470	COG0629	single-stranded DNA binding
LIS79_19475	COG0360	Binds together with S18 to 16S ribosomal RNA
LIS79_19480	COG0012	GTP binding
LIS79_19485	COG4481	Protein conserved in bacteria
LIS79_19500	COG3949	Membrane
LIS79_19510	COG1475	DNA binding
LIS79_19515	COG1192	Involved in chromosome partitioning
LIS79_19525	COG1475	DNA binding
LIS79_19530	COG0357	Ribosomal RNA small subunit methyltransferase G
LIS79_19535	COG0445	tRNA wobble uridine modification
LIS79_19540	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
LIS79_19545	COG1847	R3H domain protein
LIS79_19550	COG0706	membrane insertase activity
LIS79_19555	COG0594	ribonuclease P activity
LIS79_19560	COG0230	Belongs to the bacterial ribosomal protein bL34 family