DDT09_00005 SM00382 ATPases associated with a variety of cellular activities DDT09_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain DDT09_00010 SM00480 DNA polymerase III beta subunit DDT09_00030 SM00387 Histidine kinase-like ATPases DDT09_00030 SM00433 TopoisomeraseII DDT09_00035 SM00434 DNA Topoisomerase IV DDT09_00070 SM00116 Domain in cystathionine beta-synthase and other proteins. DDT09_00070 SM01240 DDT09_00070 DDT09_00075 SM00936 Penicillin-binding protein 5, C-terminal domain DDT09_00115 SM00257 Lysin motif DDT09_00115 SM00636 DDT09_00115 DDT09_00135 SM00382 ATPases associated with a variety of cellular activities DDT09_00145 SM00493 DDT09_00145 DDT09_00240 SM00465 GIY-YIG type nucleases (URI domain) DDT09_00250 SM00966 SpoVT / AbrB like domain DDT09_00265 SM01208 DDT09_00265 DDT09_00270 SM00493 DDT09_00270 DDT09_00275 SM00650 Ribosomal RNA adenine dimethylases DDT09_00320 SM01400 DDT09_00320 DDT09_00340 SM00487 DEAD-like helicases superfamily DDT09_00340 SM00490 helicase superfamily c-terminal domain DDT09_00340 SM00982 DDT09_00340 DDT09_00340 SM01058 CarD-like/TRCF domain DDT09_00345 SM00966 SpoVT / AbrB like domain DDT09_00360 SM00363 S4 RNA-binding domain DDT09_00380 SM00316 Ribosomal protein S1-like RNA-binding domain DDT09_00395 SM00331 Sigma factor PP2C-like phosphatases DDT09_00395 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain DDT09_00405 SM00220 Serine/Threonine protein kinases, catalytic domain DDT09_00410 SM00977 TilS substrate C-terminal domain DDT09_00420 SM00382 ATPases associated with a variety of cellular activities DDT09_00465 SM00905 Dihydroneopterin aldolase DDT09_00475 SM00530 Helix-turn-helix XRE-family like proteins DDT09_00580 SM00382 ATPases associated with a variety of cellular activities DDT09_00580 SM01086 C-terminal, D2-small domain, of ClpB protein DDT09_00585 SM00382 ATPases associated with a variety of cellular activities DDT09_00595 SM00670 Large family of predicted nucleotide-binding domains DDT09_00620 SM00840 DDT09_00620 DDT09_00625 SM00535 Ribonuclease III family DDT09_00630 SM00967 RNA 2'-O ribose methyltransferase substrate binding DDT09_00655 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. DDT09_00655 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. DDT09_00660 SM00649 Ribosomal protein L11/L12 DDT09_00690 SM00663 RNA polymerase I subunit A N-terminus DDT09_00710 SM00838 Elongation factor G C-terminus DDT09_00710 SM00889 Elongation factor G, domain IV DDT09_00725 SM01403 DDT09_00725 DDT09_00745 SM01382 DDT09_00745 DDT09_00745 SM01383 DDT09_00745 DDT09_00760 SM00322 K homology RNA-binding domain DDT09_00780 SM01374 DDT09_00780 DDT09_00785 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. DDT09_00850 SM00316 Ribosomal protein S1-like RNA-binding domain DDT09_00870 SM00662 RNA polymerases D DDT09_00880 SM00382 ATPases associated with a variety of cellular activities DDT09_00885 SM00382 ATPases associated with a variety of cellular activities DDT09_00925 SM00646 DDT09_00925 DDT09_00940 SM01251 DDT09_00940 DDT09_01020 SM00829 Enoylreductase DDT09_01055 SM00342 helix_turn_helix, arabinose operon control protein DDT09_01150 SM00382 ATPases associated with a variety of cellular activities DDT09_01185 SM00347 helix_turn_helix multiple antibiotic resistance protein DDT09_01205 SM00421 helix_turn_helix, Lux Regulon DDT09_01205 SM00448 cheY-homologous receiver domain DDT09_01210 SM00382 ATPases associated with a variety of cellular activities DDT09_01310 SM00530 Helix-turn-helix XRE-family like proteins DDT09_01345 SM00450 Rhodanese Homology Domain DDT09_01380 SM00387 Histidine kinase-like ATPases DDT09_01385 SM00448 cheY-homologous receiver domain DDT09_01455 SM00870 DDT09_01455 DDT09_01495 SM00028 Tetratricopeptide repeats DDT09_01515 SM00642 Alpha-amylase domain DDT09_01525 SM00382 ATPases associated with a variety of cellular activities DDT09_01575 SM00116 Domain in cystathionine beta-synthase and other proteins. DDT09_01575 SM00382 ATPases associated with a variety of cellular activities DDT09_01605 SM00632 DDT09_01605 DDT09_01605 SM00642 Alpha-amylase domain DDT09_01625 SM00347 helix_turn_helix multiple antibiotic resistance protein DDT09_01730 SM00926 Molybdopterin oxidoreductase Fe4S4 domain DDT09_01745 SM00833 Cobalamin synthesis protein cobW C-terminal domain DDT09_01785 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family DDT09_01800 SM00823 Phosphopantetheine attachment site DDT09_01805 SM00823 Phosphopantetheine attachment site DDT09_01810 SM00823 Phosphopantetheine attachment site DDT09_01835 SM00382 ATPases associated with a variety of cellular activities DDT09_01845 SM00062 Bacterial periplasmic substrate-binding proteins DDT09_01880 SM00710 Parallel beta-helix repeats DDT09_01880 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses DDT09_01915 SM00062 Bacterial periplasmic substrate-binding proteins DDT09_01925 SM00382 ATPases associated with a variety of cellular activities DDT09_01940 SM00382 ATPases associated with a variety of cellular activities DDT09_01950 SM00448 cheY-homologous receiver domain DDT09_01950 SM00862 Transcriptional regulatory protein, C terminal DDT09_01955 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DDT09_01955 SM00387 Histidine kinase-like ATPases DDT09_01955 SM00388 His Kinase A (phosphoacceptor) domain DDT09_01960 SM00028 Tetratricopeptide repeats DDT09_01990 SM00382 ATPases associated with a variety of cellular activities DDT09_02020 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DDT09_02025 SM00345 helix_turn_helix gluconate operon transcriptional repressor DDT09_02060 SM00420 helix_turn_helix, Deoxyribose operon repressor DDT09_02115 SM00796 Allophanate hydrolase subunit 1 DDT09_02120 SM00797 Allophanate hydrolase subunit 2 DDT09_02125 SM00346 helix_turn_helix isocitrate lyase regulation DDT09_02195 SM00344 helix_turn_helix ASNC type DDT09_02200 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain DDT09_02200 SM00437 Bacterial DNA topoisomerase I DNA-binding domain DDT09_02200 SM00493 DDT09_02200 DDT09_02210 SM00267 diguanylate cyclase DDT09_02260 SM00860 SMI1 / KNR4 family DDT09_02270 SM00028 Tetratricopeptide repeats DDT09_02360 SM00091 PAS domain DDT09_02360 SM00387 Histidine kinase-like ATPases DDT09_02365 SM00448 cheY-homologous receiver domain DDT09_02380 SM00382 ATPases associated with a variety of cellular activities DDT09_02430 SM00487 DEAD-like helicases superfamily DDT09_02430 SM00490 helicase superfamily c-terminal domain DDT09_02460 SM01005 Alanine racemase, C-terminal domain DDT09_02485 SM00387 Histidine kinase-like ATPases DDT09_02490 SM00331 Sigma factor PP2C-like phosphatases DDT09_02510 SM00331 Sigma factor PP2C-like phosphatases DDT09_02510 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain DDT09_02515 SM00316 Ribosomal protein S1-like RNA-binding domain DDT09_02515 SM00732 Likely ribonuclease with RNase H fold. DDT09_02525 SM00731 SprT homologues. DDT09_02585 SM00347 helix_turn_helix multiple antibiotic resistance protein DDT09_02640 SM00357 Cold shock protein domain DDT09_02645 SM01058 CarD-like/TRCF domain DDT09_02665 SM00347 helix_turn_helix multiple antibiotic resistance protein DDT09_02690 SM00345 helix_turn_helix gluconate operon transcriptional repressor DDT09_02690 SM00895 DDT09_02690 DDT09_02710 SM00342 helix_turn_helix, arabinose operon control protein DDT09_02720 SM00345 helix_turn_helix gluconate operon transcriptional repressor DDT09_02780 SM01130 DDT09_02780 DDT09_02800 SM00829 Enoylreductase DDT09_02805 SM00422 helix_turn_helix, mercury resistance DDT09_02815 SM00345 helix_turn_helix gluconate operon transcriptional repressor DDT09_02845 SM00345 helix_turn_helix gluconate operon transcriptional repressor DDT09_02880 SM00387 Histidine kinase-like ATPases DDT09_02885 SM00421 helix_turn_helix, Lux Regulon DDT09_02885 SM00448 cheY-homologous receiver domain DDT09_02900 SM00382 ATPases associated with a variety of cellular activities DDT09_02925 SM00825 Beta-ketoacyl synthase DDT09_02930 SM00530 Helix-turn-helix XRE-family like proteins DDT09_02945 SM00422 helix_turn_helix, mercury resistance DDT09_02965 SM01329 DDT09_02965 DDT09_02970 SM00345 helix_turn_helix gluconate operon transcriptional repressor DDT09_02970 SM00895 DDT09_02970 DDT09_03005 SM00345 helix_turn_helix gluconate operon transcriptional repressor DDT09_03005 SM00866 DDT09_03005 DDT09_03010 SM00345 helix_turn_helix gluconate operon transcriptional repressor DDT09_03010 SM00895 DDT09_03010 DDT09_03050 SM00829 Enoylreductase DDT09_03120 SM00382 ATPases associated with a variety of cellular activities DDT09_03130 SM00881 CoA binding domain DDT09_03155 SM00883 Chaperonin 10 Kd subunit DDT09_03175 SM00028 Tetratricopeptide repeats DDT09_03175 SM00382 ATPases associated with a variety of cellular activities DDT09_03180 SM00829 Enoylreductase DDT09_03235 SM00829 Enoylreductase DDT09_03280 SM00460 Transglutaminase/protease-like homologues DDT09_03290 SM01209 DDT09_03290 DDT09_03350 SM01001 AIR carboxylase DDT09_03360 SM00998 Adenylosuccinate lyase C-terminus DDT09_03375 SM01211 DDT09_03375 DDT09_03400 SM00798 AICARFT/IMPCHase bienzyme DDT09_03400 SM00851 MGS-like domain DDT09_03405 SM01209 DDT09_03405 DDT09_03405 SM01210 DDT09_03405 DDT09_03450 SM00278 Helix-hairpin-helix DNA-binding motif class 1 DDT09_03450 SM00292 breast cancer carboxy-terminal domain DDT09_03450 SM00532 Ligase N family DDT09_03485 SM00845 GatB domain DDT09_03500 SM00046 Diacylglycerol kinase catalytic domain (presumed) DDT09_03510 SM00382 ATPases associated with a variety of cellular activities DDT09_03520 SM00382 ATPases associated with a variety of cellular activities DDT09_03635 SM00382 ATPases associated with a variety of cellular activities DDT09_03655 SM00347 helix_turn_helix multiple antibiotic resistance protein DDT09_03685 SM00382 ATPases associated with a variety of cellular activities DDT09_03745 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DDT09_03760 SM00382 ATPases associated with a variety of cellular activities DDT09_03765 SM00422 helix_turn_helix, mercury resistance DDT09_03775 SM00382 ATPases associated with a variety of cellular activities DDT09_03780 SM00487 DEAD-like helicases superfamily DDT09_03780 SM00490 helicase superfamily c-terminal domain DDT09_03790 SM00829 Enoylreductase DDT09_03805 SM00656 DDT09_03805 DDT09_03830 SM00387 Histidine kinase-like ATPases DDT09_03830 SM00388 His Kinase A (phosphoacceptor) domain DDT09_03830 SM00448 cheY-homologous receiver domain DDT09_03835 SM00448 cheY-homologous receiver domain DDT09_03835 SM00862 Transcriptional regulatory protein, C terminal DDT09_03850 SM00387 Histidine kinase-like ATPases DDT09_03855 SM00448 cheY-homologous receiver domain DDT09_03870 SM00849 Metallo-beta-lactamase superfamily DDT09_03950 SM00642 Alpha-amylase domain DDT09_03955 SM00345 helix_turn_helix gluconate operon transcriptional repressor DDT09_03955 SM00866 DDT09_03955 DDT09_03985 SM00354 helix_turn _helix lactose operon repressor DDT09_04010 SM00226 Low molecular weight phosphatase family DDT09_04075 SM00478 endonuclease III DDT09_04115 SM00861 Transketolase, pyrimidine binding domain DDT09_04130 SM00382 ATPases associated with a variety of cellular activities DDT09_04155 SM00382 ATPases associated with a variety of cellular activities DDT09_04160 SM00382 ATPases associated with a variety of cellular activities DDT09_04220 SM00347 helix_turn_helix multiple antibiotic resistance protein DDT09_04290 SM00287 Bacterial SH3 domain homologues DDT09_04320 SM00478 endonuclease III DDT09_04320 SM00525 DDT09_04320 DDT09_04350 SM00382 ATPases associated with a variety of cellular activities DDT09_04525 SM00382 ATPases associated with a variety of cellular activities DDT09_04530 SM00382 ATPases associated with a variety of cellular activities DDT09_04535 SM01060 DDT09_04535 DDT09_04545 SM00382 ATPases associated with a variety of cellular activities DDT09_04550 SM00062 Bacterial periplasmic substrate-binding proteins DDT09_04575 SM00530 Helix-turn-helix XRE-family like proteins DDT09_04590 SM00567 E-Z type HEAT repeats DDT09_04625 SM00763 PrkA AAA domain DDT09_04640 SM00347 helix_turn_helix multiple antibiotic resistance protein DDT09_04670 SM00345 helix_turn_helix gluconate operon transcriptional repressor DDT09_04675 SM00382 ATPases associated with a variety of cellular activities DDT09_04680 SM00382 ATPases associated with a variety of cellular activities DDT09_04690 SM00357 Cold shock protein domain DDT09_04705 SM00267 diguanylate cyclase DDT09_04755 SM00116 Domain in cystathionine beta-synthase and other proteins. DDT09_04800 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. DDT09_04800 SM00387 Histidine kinase-like ATPases DDT09_04805 SM00421 helix_turn_helix, Lux Regulon DDT09_04805 SM00448 cheY-homologous receiver domain DDT09_04825 SM00257 Lysin motif DDT09_04845 SM00098 Alkaline phosphatase homologues DDT09_04850 SM00257 Lysin motif DDT09_04895 SM00563 Phosphate acyltransferases DDT09_04900 SM01091 Transporter associated domain DDT09_04905 SM00422 helix_turn_helix, mercury resistance DDT09_04915 SM00825 Beta-ketoacyl synthase DDT09_04920 SM01091 Transporter associated domain DDT09_04980 SM00382 ATPases associated with a variety of cellular activities DDT09_04985 SM00382 ATPases associated with a variety of cellular activities DDT09_05040 SM00729 Elongator protein 3, MiaB family, Radical SAM DDT09_05075 SM00382 ATPases associated with a variety of cellular activities DDT09_05095 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DDT09_05140 SM00347 helix_turn_helix multiple antibiotic resistance protein DDT09_05170 SM00382 ATPases associated with a variety of cellular activities DDT09_05255 SM00849 Metallo-beta-lactamase superfamily DDT09_05300 SM00855 Phosphoglycerate mutase family DDT09_05320 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DDT09_05335 SM00914 DDT09_05335 DDT09_05365 SM00894 Excalibur calcium-binding domain DDT09_05405 SM00347 helix_turn_helix multiple antibiotic resistance protein DDT09_05525 SM00342 helix_turn_helix, arabinose operon control protein DDT09_05530 SM00354 helix_turn _helix lactose operon repressor DDT09_05570 SM00316 Ribosomal protein S1-like RNA-binding domain DDT09_05580 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DDT09_05580 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DDT09_05645 SM00859 Semialdehyde dehydrogenase, NAD binding domain DDT09_05665 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain DDT09_05670 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DDT09_05725 SM00825 Beta-ketoacyl synthase DDT09_05735 SM00382 ATPases associated with a variety of cellular activities DDT09_05740 SM00382 ATPases associated with a variety of cellular activities DDT09_05785 SM00382 ATPases associated with a variety of cellular activities DDT09_05790 SM00382 ATPases associated with a variety of cellular activities DDT09_05845 SM01118 DDT09_05845 DDT09_05855 SM00954 Region found in RelA / SpoT proteins DDT09_05985 SM00849 Metallo-beta-lactamase superfamily DDT09_05995 SM00382 ATPases associated with a variety of cellular activities DDT09_06000 SM00966 SpoVT / AbrB like domain DDT09_06110 SM00493 DDT09_06110 DDT09_06115 SM00530 Helix-turn-helix XRE-family like proteins DDT09_06155 SM00474 3'-5' exonuclease DDT09_06155 SM00482 DNA polymerase A domain DDT09_06165 SM00479 DDT09_06165 DDT09_06305 SM00710 Parallel beta-helix repeats DDT09_06315 SM00530 Helix-turn-helix XRE-family like proteins DDT09_06425 SM00047 Lysozyme subfamily 2 DDT09_06435 SM00710 Parallel beta-helix repeats DDT09_06460 SM00257 Lysin motif DDT09_06460 SM00644 DDT09_06460 DDT09_06570 SM00347 helix_turn_helix multiple antibiotic resistance protein DDT09_06610 SM00420 helix_turn_helix, Deoxyribose operon repressor DDT09_06610 SM01134 DDT09_06610 DDT09_06625 SM00347 helix_turn_helix multiple antibiotic resistance protein DDT09_06655 SM00926 Molybdopterin oxidoreductase Fe4S4 domain DDT09_06655 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DDT09_06690 SM00382 ATPases associated with a variety of cellular activities DDT09_06725 SM00354 helix_turn _helix lactose operon repressor DDT09_06735 SM00858 DDT09_06735 DDT09_06750 SM00028 Tetratricopeptide repeats DDT09_06755 SM00257 Lysin motif DDT09_06755 SM00644 DDT09_06755 DDT09_06775 SM00530 Helix-turn-helix XRE-family like proteins DDT09_06790 SM00382 ATPases associated with a variety of cellular activities DDT09_06885 SM00257 Lysin motif DDT09_06950 SM00257 Lysin motif DDT09_06950 SM00644 DDT09_06950 DDT09_07000 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. DDT09_07025 SM00382 ATPases associated with a variety of cellular activities DDT09_07040 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain DDT09_07050 SM00382 ATPases associated with a variety of cellular activities DDT09_07090 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase DDT09_07105 SM00347 helix_turn_helix multiple antibiotic resistance protein DDT09_07125 SM00028 Tetratricopeptide repeats DDT09_07140 SM00100 Cyclic nucleotide-monophosphate binding domain DDT09_07165 SM00382 ATPases associated with a variety of cellular activities DDT09_07175 SM00257 Lysin motif DDT09_07175 SM00636 DDT09_07175 DDT09_07195 SM00116 Domain in cystathionine beta-synthase and other proteins. DDT09_07195 SM00924 MgtE intracellular N domain DDT09_07200 SM00422 helix_turn_helix, mercury resistance DDT09_07215 SM00347 helix_turn_helix multiple antibiotic resistance protein DDT09_07230 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen DDT09_07295 SM00091 PAS domain DDT09_07295 SM00387 Histidine kinase-like ATPases DDT09_07295 SM00388 His Kinase A (phosphoacceptor) domain DDT09_07335 SM01007 Class II Aldolase and Adducin N-terminal domain DDT09_07350 SM00387 Histidine kinase-like ATPases DDT09_07350 SM00388 His Kinase A (phosphoacceptor) domain DDT09_07355 SM00347 helix_turn_helix multiple antibiotic resistance protein DDT09_07370 SM00382 ATPases associated with a variety of cellular activities DDT09_07370 SM01086 C-terminal, D2-small domain, of ClpB protein DDT09_07415 SM00822 DDT09_07415 DDT09_07470 SM00354 helix_turn _helix lactose operon repressor DDT09_07475 SM01061 CAT RNA binding domain DDT09_07505 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DDT09_07505 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DDT09_07550 SM00260 Two component signalling adaptor domain DDT09_07550 SM00448 cheY-homologous receiver domain DDT09_07565 SM00257 Lysin motif DDT09_07585 SM00052 Putative diguanylate phosphodiesterase DDT09_07675 SM00852 Probable molybdopterin binding domain DDT09_07705 SM00382 ATPases associated with a variety of cellular activities DDT09_07715 SM00420 helix_turn_helix, Deoxyribose operon repressor DDT09_07715 SM01134 DDT09_07715 DDT09_07740 SM00382 ATPases associated with a variety of cellular activities DDT09_07770 SM00966 SpoVT / AbrB like domain DDT09_07775 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) DDT09_07775 SM00091 PAS domain DDT09_07775 SM00387 Histidine kinase-like ATPases DDT09_07775 SM00388 His Kinase A (phosphoacceptor) domain DDT09_07795 SM00849 Metallo-beta-lactamase superfamily DDT09_07830 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. DDT09_07835 SM00822 DDT09_07835 DDT09_07835 SM00823 Phosphopantetheine attachment site DDT09_07835 SM00825 Beta-ketoacyl synthase DDT09_07835 SM00826 DDT09_07835 DDT09_07835 SM01294 DDT09_07835 DDT09_07840 SM00822 DDT09_07840 DDT09_07840 SM00823 Phosphopantetheine attachment site DDT09_07840 SM00825 Beta-ketoacyl synthase DDT09_07840 SM00826 DDT09_07840 DDT09_07845 SM00822 DDT09_07845 DDT09_07845 SM00823 Phosphopantetheine attachment site DDT09_07845 SM00825 Beta-ketoacyl synthase DDT09_07845 SM01294 DDT09_07845 DDT09_07850 SM00822 DDT09_07850 DDT09_07850 SM00823 Phosphopantetheine attachment site DDT09_07850 SM00825 Beta-ketoacyl synthase DDT09_07850 SM01294 DDT09_07850 DDT09_07855 SM00822 DDT09_07855 DDT09_07855 SM00823 Phosphopantetheine attachment site DDT09_07855 SM00825 Beta-ketoacyl synthase DDT09_07855 SM01294 DDT09_07855 DDT09_07860 SM00822 DDT09_07860 DDT09_07860 SM00823 Phosphopantetheine attachment site DDT09_07860 SM00825 Beta-ketoacyl synthase DDT09_07860 SM01294 DDT09_07860 DDT09_07865 SM00822 DDT09_07865 DDT09_07865 SM00823 Phosphopantetheine attachment site DDT09_07865 SM01294 DDT09_07865 DDT09_07880 SM00861 Transketolase, pyrimidine binding domain DDT09_07980 SM00838 Elongation factor G C-terminus DDT09_08000 SM00670 Large family of predicted nucleotide-binding domains DDT09_08025 SM00878 Biotin carboxylase C-terminal domain DDT09_08070 SM00116 Domain in cystathionine beta-synthase and other proteins. DDT09_08185 SM00740 DDT09_08185 DDT09_08190 SM00740 DDT09_08190 DDT09_08230 SM00842 Cell division protein FtsA DDT09_08235 SM00864 Tubulin/FtsZ family, GTPase domain DDT09_08235 SM00865 Tubulin/FtsZ family, C-terminal domain DDT09_08260 SM00382 ATPases associated with a variety of cellular activities DDT09_08295 SM00363 S4 RNA-binding domain DDT09_08325 SM00363 S4 RNA-binding domain DDT09_08350 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain DDT09_08355 SM00851 MGS-like domain DDT09_08355 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DDT09_08355 SM01209 DDT09_08355 DDT09_08370 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family DDT09_08425 SM00831 Cation transporter/ATPase, N-terminus DDT09_08440 SM00072 Guanylate kinase homologues. DDT09_08445 SM01409 DDT09_08445 DDT09_08455 SM00487 DEAD-like helicases superfamily DDT09_08455 SM00490 helicase superfamily c-terminal domain DDT09_08480 SM00331 Sigma factor PP2C-like phosphatases DDT09_08480 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain DDT09_08485 SM00220 Serine/Threonine protein kinases, catalytic domain DDT09_08485 SM00740 DDT09_08485 DDT09_08500 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain DDT09_08520 SM01120 DDT09_08520 DDT09_08520 SM01121 DDT09_08520 DDT09_08535 SM00487 DEAD-like helicases superfamily DDT09_08535 SM00490 helicase superfamily c-terminal domain DDT09_08550 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. DDT09_08555 SM00822 DDT09_08555 DDT09_08565 SM00358 Double-stranded RNA binding motif DDT09_08565 SM00535 Ribonuclease III family DDT09_08570 SM00968 SMC proteins Flexible Hinge Domain DDT09_08575 SM00382 ATPases associated with a variety of cellular activities DDT09_08575 SM00962 SRP54-type protein, GTPase domain DDT09_08575 SM00963 SRP54-type protein, helical bundle domain DDT09_08590 SM00382 ATPases associated with a variety of cellular activities DDT09_08590 SM00962 SRP54-type protein, GTPase domain DDT09_08590 SM00963 SRP54-type protein, helical bundle domain DDT09_08650 SM00881 CoA binding domain DDT09_08660 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain DDT09_08660 SM00437 Bacterial DNA topoisomerase I DNA-binding domain DDT09_08660 SM00493 DDT09_08660 DDT09_08680 SM00382 ATPases associated with a variety of cellular activities DDT09_08680 SM01086 C-terminal, D2-small domain, of ClpB protein DDT09_08720 SM00382 ATPases associated with a variety of cellular activities DDT09_08770 SM00448 cheY-homologous receiver domain DDT09_08805 SM00962 SRP54-type protein, GTPase domain DDT09_08815 SM00448 cheY-homologous receiver domain DDT09_08820 SM00073 Histidine Phosphotransfer domain DDT09_08820 SM00260 Two component signalling adaptor domain DDT09_08820 SM00387 Histidine kinase-like ATPases DDT09_08820 SM01231 DDT09_08820 DDT09_08825 SM00260 Two component signalling adaptor domain DDT09_08885 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. DDT09_08895 SM00479 DDT09_08895 DDT09_08895 SM00481 DNA polymerase alpha chain like domain DDT09_08905 SM00316 Ribosomal protein S1-like RNA-binding domain DDT09_08905 SM00322 K homology RNA-binding domain DDT09_08940 SM00904 Riboflavin kinase DDT09_08945 SM01387 DDT09_08945 DDT09_08950 SM00316 Ribosomal protein S1-like RNA-binding domain DDT09_08950 SM00322 K homology RNA-binding domain DDT09_08980 SM00859 Semialdehyde dehydrogenase, NAD binding domain DDT09_08990 SM01130 DDT09_08990 DDT09_08995 SM00849 Metallo-beta-lactamase superfamily DDT09_09010 SM00382 ATPases associated with a variety of cellular activities DDT09_09010 SM00843 DDT09_09010 DDT09_09015 SM00345 helix_turn_helix gluconate operon transcriptional repressor DDT09_09015 SM00866 DDT09_09015 DDT09_09025 SM00347 helix_turn_helix multiple antibiotic resistance protein DDT09_09060 SM00530 Helix-turn-helix XRE-family like proteins DDT09_09070 SM00852 Probable molybdopterin binding domain DDT09_09075 SM00382 ATPases associated with a variety of cellular activities DDT09_09085 SM00322 K homology RNA-binding domain DDT09_09085 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DDT09_09100 SM00829 Enoylreductase DDT09_09110 SM00729 Elongator protein 3, MiaB family, Radical SAM DDT09_09125 SM00533 DNA-binding domain of DNA mismatch repair MUTS family DDT09_09125 SM00534 ATPase domain of DNA mismatch repair MUTS family DDT09_09130 SM00853 MutL C terminal dimerisation domain DDT09_09130 SM01340 DDT09_09130 DDT09_09185 SM00849 Metallo-beta-lactamase superfamily DDT09_09190 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. DDT09_09195 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. DDT09_09200 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. DDT09_09225 SM00822 DDT09_09225 DDT09_09225 SM00823 Phosphopantetheine attachment site DDT09_09225 SM00825 Beta-ketoacyl synthase DDT09_09225 SM00826 DDT09_09225 DDT09_09225 SM01294 DDT09_09225 DDT09_09230 SM00822 DDT09_09230 DDT09_09230 SM00823 Phosphopantetheine attachment site DDT09_09230 SM00825 Beta-ketoacyl synthase DDT09_09230 SM00826 DDT09_09230 DDT09_09230 SM01294 DDT09_09230 DDT09_09235 SM00822 DDT09_09235 DDT09_09235 SM00823 Phosphopantetheine attachment site DDT09_09235 SM00825 Beta-ketoacyl synthase DDT09_09235 SM00826 DDT09_09235 DDT09_09235 SM01294 DDT09_09235 DDT09_09240 SM00822 DDT09_09240 DDT09_09240 SM00823 Phosphopantetheine attachment site DDT09_09240 SM00825 Beta-ketoacyl synthase DDT09_09240 SM00826 DDT09_09240 DDT09_09240 SM01294 DDT09_09240 DDT09_09245 SM00823 Phosphopantetheine attachment site DDT09_09245 SM00825 Beta-ketoacyl synthase DDT09_09245 SM01294 DDT09_09245 DDT09_09350 SM00646 DDT09_09350 DDT09_09360 SM00382 ATPases associated with a variety of cellular activities DDT09_09375 SM00422 helix_turn_helix, mercury resistance DDT09_09380 SM01230 DDT09_09380 DDT09_09475 SM00829 Enoylreductase DDT09_09515 SM00860 SMI1 / KNR4 family DDT09_09520 SM00860 SMI1 / KNR4 family DDT09_09580 SM00710 Parallel beta-helix repeats DDT09_09625 SM00257 Lysin motif DDT09_09630 SM00857 Resolvase, N terminal domain DDT09_09640 SM00861 Transketolase, pyrimidine binding domain DDT09_09665 SM00448 cheY-homologous receiver domain DDT09_09735 SM01207 DDT09_09735 DDT09_09740 SM00881 CoA binding domain DDT09_09745 SM00387 Histidine kinase-like ATPases DDT09_09745 SM00433 TopoisomeraseII DDT09_09750 SM00434 DNA Topoisomerase IV DDT09_09770 SM00829 Enoylreductase DDT09_09790 SM00354 helix_turn _helix lactose operon repressor DDT09_09820 SM00382 ATPases associated with a variety of cellular activities DDT09_09835 SM01067 Cellulose binding domain DDT09_09845 SM00387 Histidine kinase-like ATPases DDT09_09845 SM00388 His Kinase A (phosphoacceptor) domain DDT09_09850 SM00448 cheY-homologous receiver domain DDT09_09850 SM00862 Transcriptional regulatory protein, C terminal DDT09_09860 SM00606 Cellulose Binding Domain Type IV DDT09_09865 SM00823 Phosphopantetheine attachment site DDT09_09865 SM00824 Thioesterase DDT09_09870 SM00823 Phosphopantetheine attachment site DDT09_09875 SM00823 Phosphopantetheine attachment site DDT09_09875 SM00825 Beta-ketoacyl synthase DDT09_09880 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. DDT09_09890 SM00822 DDT09_09890 DDT09_09895 SM00882 Coenzyme A transferase DDT09_09900 SM00882 Coenzyme A transferase DDT09_09915 SM00729 Elongator protein 3, MiaB family, Radical SAM DDT09_09915 SM00876 Biotin and Thiamin Synthesis associated domain DDT09_09975 SM00878 Biotin carboxylase C-terminal domain DDT09_10000 SM00824 Thioesterase DDT09_10005 SM00823 Phosphopantetheine attachment site DDT09_10010 SM00823 Phosphopantetheine attachment site DDT09_10015 SM00823 Phosphopantetheine attachment site DDT09_10020 SM00823 Phosphopantetheine attachment site DDT09_10075 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DDT09_10080 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain DDT09_10090 SM00829 Enoylreductase DDT09_10115 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase DDT09_10130 SM00822 DDT09_10130 DDT09_10160 SM00926 Molybdopterin oxidoreductase Fe4S4 domain DDT09_10175 SM00347 helix_turn_helix multiple antibiotic resistance protein DDT09_10185 SM00860 SMI1 / KNR4 family DDT09_10200 SM00342 helix_turn_helix, arabinose operon control protein DDT09_10210 SM00849 Metallo-beta-lactamase superfamily DDT09_10220 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DDT09_10255 SM00257 Lysin motif DDT09_10260 SM00341 Helicase and RNase D C-terminal DDT09_10260 SM00487 DEAD-like helicases superfamily DDT09_10260 SM00490 helicase superfamily c-terminal domain DDT09_10260 SM00956 DDT09_10260 DDT09_10345 SM00849 Metallo-beta-lactamase superfamily DDT09_10355 SM00861 Transketolase, pyrimidine binding domain DDT09_10360 SM00327 von Willebrand factor (vWF) type A domain DDT09_10365 SM00382 ATPases associated with a variety of cellular activities DDT09_10375 SM00257 Lysin motif DDT09_10480 SM00345 helix_turn_helix gluconate operon transcriptional repressor DDT09_10480 SM00866 DDT09_10480 DDT09_10485 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. DDT09_10485 SM00245 tail specific protease DDT09_10520 SM00014 Acid phosphatase homologues DDT09_10565 SM00882 Coenzyme A transferase DDT09_10570 SM00882 Coenzyme A transferase DDT09_10580 SM00871 Bacterial transcription activator, effector binding domain DDT09_10635 SM00347 helix_turn_helix multiple antibiotic resistance protein DDT09_10665 SM00382 ATPases associated with a variety of cellular activities DDT09_10710 SM00567 E-Z type HEAT repeats DDT09_10710 SM00932 Scaffold protein Nfu/NifU N terminal DDT09_10715 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DDT09_10735 SM00357 Cold shock protein domain DDT09_10775 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs DDT09_10775 SM00475 5'-3' exonuclease DDT09_10860 SM00491 DDT09_10860 DDT09_10875 SM00981 DDT09_10875 DDT09_10905 SM00487 DEAD-like helicases superfamily DDT09_10905 SM00490 helicase superfamily c-terminal domain DDT09_10955 SM00060 Fibronectin type 3 domain DDT09_10965 SM00478 endonuclease III DDT09_10965 SM00525 DDT09_10965 DDT09_10995 SM00479 DDT09_10995 DDT09_10995 SM00487 DEAD-like helicases superfamily DDT09_10995 SM00491 DDT09_10995 DDT09_11035 SM00851 MGS-like domain DDT09_11055 SM00835 Cupin DDT09_11090 SM00914 DDT09_11090 DDT09_11095 SM00028 Tetratricopeptide repeats DDT09_11160 SM00138 Methyltransferase, chemotaxis proteins DDT09_11165 SM00562 DDT09_11165 DDT09_11195 SM00411 bacterial (prokaryotic) histone like domain DDT09_11240 SM00316 Ribosomal protein S1-like RNA-binding domain DDT09_11275 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DDT09_11295 SM00257 Lysin motif DDT09_11305 SM00487 DEAD-like helicases superfamily DDT09_11305 SM00490 helicase superfamily c-terminal domain DDT09_11340 SM00091 PAS domain DDT09_11340 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DDT09_11340 SM00387 Histidine kinase-like ATPases DDT09_11340 SM00388 His Kinase A (phosphoacceptor) domain DDT09_11345 SM00448 cheY-homologous receiver domain DDT09_11345 SM00862 Transcriptional regulatory protein, C terminal DDT09_11365 SM00363 S4 RNA-binding domain DDT09_11510 SM00387 Histidine kinase-like ATPases DDT09_11520 SM00936 Penicillin-binding protein 5, C-terminal domain DDT09_11565 SM00919 Malic enzyme, NAD binding domain DDT09_11565 SM01274 DDT09_11565 DDT09_11580 SM00870 DDT09_11580 DDT09_11585 SM00530 Helix-turn-helix XRE-family like proteins DDT09_11690 SM00849 Metallo-beta-lactamase superfamily DDT09_11715 SM00823 Phosphopantetheine attachment site DDT09_11715 SM00825 Beta-ketoacyl synthase DDT09_11715 SM00829 Enoylreductase DDT09_11715 SM01294 DDT09_11715 DDT09_11720 SM00822 DDT09_11720 DDT09_11720 SM00823 Phosphopantetheine attachment site DDT09_11720 SM00825 Beta-ketoacyl synthase DDT09_11720 SM00826 DDT09_11720 DDT09_11725 SM00822 DDT09_11725 DDT09_11725 SM00823 Phosphopantetheine attachment site DDT09_11725 SM00825 Beta-ketoacyl synthase DDT09_11725 SM01294 DDT09_11725 DDT09_11730 SM00822 DDT09_11730 DDT09_11730 SM00823 Phosphopantetheine attachment site DDT09_11730 SM00825 Beta-ketoacyl synthase DDT09_11730 SM00826 DDT09_11730 DDT09_11730 SM01294 DDT09_11730 DDT09_11735 SM00822 DDT09_11735 DDT09_11735 SM00823 Phosphopantetheine attachment site DDT09_11735 SM00825 Beta-ketoacyl synthase DDT09_11735 SM00826 DDT09_11735 DDT09_11735 SM01294 DDT09_11735 DDT09_11740 SM00822 DDT09_11740 DDT09_11740 SM00823 Phosphopantetheine attachment site DDT09_11740 SM00825 Beta-ketoacyl synthase DDT09_11740 SM01294 DDT09_11740 DDT09_11745 SM00822 DDT09_11745 DDT09_11745 SM00823 Phosphopantetheine attachment site DDT09_11745 SM00825 Beta-ketoacyl synthase DDT09_11745 SM00826 DDT09_11745 DDT09_11745 SM01294 DDT09_11745 DDT09_11770 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. DDT09_11780 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. DDT09_11825 SM01350 DDT09_11825 DDT09_11870 SM00382 ATPases associated with a variety of cellular activities DDT09_11880 SM00062 Bacterial periplasmic substrate-binding proteins DDT09_11880 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. DDT09_11890 SM00046 Diacylglycerol kinase catalytic domain (presumed) DDT09_11900 SM00861 Transketolase, pyrimidine binding domain DDT09_11920 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DDT09_11930 SM00091 PAS domain DDT09_11930 SM00382 ATPases associated with a variety of cellular activities DDT09_11975 SM00646 DDT09_11975 DDT09_11990 SM00530 Helix-turn-helix XRE-family like proteins DDT09_12010 SM01005 Alanine racemase, C-terminal domain DDT09_12015 SM00448 cheY-homologous receiver domain DDT09_12020 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. DDT09_12035 SM00363 S4 RNA-binding domain DDT09_12040 SM00861 Transketolase, pyrimidine binding domain DDT09_12075 SM00878 Biotin carboxylase C-terminal domain DDT09_12120 SM00382 ATPases associated with a variety of cellular activities DDT09_12130 SM00841 Elongation factor P, C-terminal DDT09_12130 SM01185 DDT09_12130 DDT09_12160 SM00529 Helix-turn-helix diphteria tox regulatory element DDT09_12170 SM00450 Rhodanese Homology Domain DDT09_12190 SM00487 DEAD-like helicases superfamily DDT09_12190 SM00490 helicase superfamily c-terminal domain DDT09_12205 SM00530 Helix-turn-helix XRE-family like proteins DDT09_12265 SM00382 ATPases associated with a variety of cellular activities DDT09_12275 SM01091 Transporter associated domain DDT09_12300 SM00849 Metallo-beta-lactamase superfamily DDT09_12320 SM00631 DDT09_12320 DDT09_12365 SM00382 ATPases associated with a variety of cellular activities DDT09_12370 SM00382 ATPases associated with a variety of cellular activities DDT09_12415 SM00257 Lysin motif DDT09_12450 SM00518 AP endonuclease family 2 DDT09_12455 SM00487 DEAD-like helicases superfamily DDT09_12455 SM00490 helicase superfamily c-terminal domain DDT09_12490 SM00400 zinc finger DDT09_12490 SM00493 DDT09_12490 DDT09_12505 SM00116 Domain in cystathionine beta-synthase and other proteins. DDT09_12550 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DDT09_12600 SM00729 Elongator protein 3, MiaB family, Radical SAM DDT09_12615 SM00271 DnaJ molecular chaperone homology domain DDT09_12635 SM00729 Elongator protein 3, MiaB family, Radical SAM DDT09_12640 SM00838 Elongation factor G C-terminus DDT09_12675 SM00849 Metallo-beta-lactamase superfamily DDT09_12685 SM00278 Helix-hairpin-helix DNA-binding motif class 1 DDT09_12705 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DDT09_12715 SM01103 DDT09_12715 DDT09_12785 SM00342 helix_turn_helix, arabinose operon control protein DDT09_12785 SM00871 Bacterial transcription activator, effector binding domain DDT09_12860 SM00849 Metallo-beta-lactamase superfamily DDT09_12915 SM00926 Molybdopterin oxidoreductase Fe4S4 domain DDT09_12915 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DDT09_13000 SM00732 Likely ribonuclease with RNase H fold. DDT09_13010 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain DDT09_13020 SM00382 ATPases associated with a variety of cellular activities DDT09_13025 SM00062 Bacterial periplasmic substrate-binding proteins DDT09_13025 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. DDT09_13055 SM00382 ATPases associated with a variety of cellular activities DDT09_13060 SM00028 Tetratricopeptide repeats DDT09_13080 SM00382 ATPases associated with a variety of cellular activities DDT09_13105 SM00287 Bacterial SH3 domain homologues DDT09_13105 SM00646 DDT09_13105 DDT09_13115 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DDT09_13115 SM00954 Region found in RelA / SpoT proteins DDT09_13165 SM01323 DDT09_13165 DDT09_13185 SM00382 ATPases associated with a variety of cellular activities DDT09_13190 SM00278 Helix-hairpin-helix DNA-binding motif class 1 DDT09_13210 SM00257 Lysin motif DDT09_13255 SM01317 DDT09_13255 DDT09_13350 SM00257 Lysin motif DDT09_13360 SM01004 Delta-aminolevulinic acid dehydratase DDT09_13395 SM00382 ATPases associated with a variety of cellular activities DDT09_13395 SM00464 Found in ATP-dependent protease La (LON) DDT09_13400 SM00382 ATPases associated with a variety of cellular activities DDT09_13405 SM00382 ATPases associated with a variety of cellular activities DDT09_13405 SM00994 ClpX C4-type zinc finger DDT09_13405 SM01086 C-terminal, D2-small domain, of ClpB protein DDT09_13430 SM01329 DDT09_13430 DDT09_13435 SM00917 LeuA allosteric (dimerisation) domain DDT09_13480 SM00487 DEAD-like helicases superfamily DDT09_13480 SM00490 helicase superfamily c-terminal domain DDT09_13520 SM00909 Sporulation and spore germination DDT09_13530 SM00347 helix_turn_helix multiple antibiotic resistance protein DDT09_13535 SM00421 helix_turn_helix, Lux Regulon DDT09_13575 SM00465 GIY-YIG type nucleases (URI domain) DDT09_13585 SM00813 Alpha-L-arabinofuranosidase C-terminus DDT09_13590 SM00893 Electron transfer flavoprotein domain DDT09_13595 SM00893 Electron transfer flavoprotein domain DDT09_13630 SM00463 Small MutS-related domain DDT09_13630 SM00533 DNA-binding domain of DNA mismatch repair MUTS family DDT09_13630 SM00534 ATPase domain of DNA mismatch repair MUTS family DDT09_13635 SM00278 Helix-hairpin-helix DNA-binding motif class 1 DDT09_13635 SM00481 DNA polymerase alpha chain like domain DDT09_13635 SM00483 DNA polymerase X family DDT09_13655 SM00873 B3/4 domain DDT09_13655 SM00874 tRNA synthetase B5 domain DDT09_13655 SM00896 Ferredoxin-fold anticodon binding domain DDT09_13665 SM00967 RNA 2'-O ribose methyltransferase substrate binding DDT09_13695 SM00813 Alpha-L-arabinofuranosidase C-terminus DDT09_13725 SM01007 Class II Aldolase and Adducin N-terminal domain DDT09_13785 SM00448 cheY-homologous receiver domain DDT09_13785 SM00850 LytTr DNA-binding domain DDT09_13790 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. DDT09_13790 SM00387 Histidine kinase-like ATPases DDT09_13805 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain DDT09_13820 SM00382 ATPases associated with a variety of cellular activities DDT09_13840 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DDT09_13870 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain DDT09_13870 SM01232 DDT09_13870 DDT09_13875 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs DDT09_13875 SM00474 3'-5' exonuclease DDT09_13875 SM00475 5'-3' exonuclease DDT09_13875 SM00482 DNA polymerase A domain DDT09_13880 SM00091 PAS domain DDT09_13880 SM00387 Histidine kinase-like ATPases DDT09_13880 SM00388 His Kinase A (phosphoacceptor) domain DDT09_13885 SM00448 cheY-homologous receiver domain DDT09_13885 SM00862 Transcriptional regulatory protein, C terminal DDT09_13895 SM01329 DDT09_13895 DDT09_13965 SM00919 Malic enzyme, NAD binding domain DDT09_13965 SM01274 DDT09_13965 DDT09_13970 SM00481 DNA polymerase alpha chain like domain DDT09_14000 SM00116 Domain in cystathionine beta-synthase and other proteins. DDT09_14005 SM00849 Metallo-beta-lactamase superfamily DDT09_14025 SM00852 Probable molybdopterin binding domain DDT09_14085 SM00981 DDT09_14085 DDT09_14120 SM00267 diguanylate cyclase DDT09_14130 SM00363 S4 RNA-binding domain DDT09_14130 SM01390 DDT09_14130 DDT09_14140 SM00860 SMI1 / KNR4 family DDT09_14245 SM00363 S4 RNA-binding domain DDT09_14265 SM00116 Domain in cystathionine beta-synthase and other proteins. DDT09_14285 SM00354 helix_turn _helix lactose operon repressor DDT09_14290 SM00830 Chorismate mutase type II DDT09_14315 SM00382 ATPases associated with a variety of cellular activities DDT09_14315 SM00843 DDT09_14315 DDT09_14350 SM00919 Malic enzyme, NAD binding domain DDT09_14350 SM01274 DDT09_14350 DDT09_14355 SM00849 Metallo-beta-lactamase superfamily DDT09_14375 SM00046 Diacylglycerol kinase catalytic domain (presumed) DDT09_14410 SM00382 ATPases associated with a variety of cellular activities DDT09_14415 SM00420 helix_turn_helix, Deoxyribose operon repressor DDT09_14420 SM00363 S4 RNA-binding domain DDT09_14445 SM00354 helix_turn _helix lactose operon repressor DDT09_14475 SM00450 Rhodanese Homology Domain DDT09_14490 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) DDT09_14490 SM00091 PAS domain DDT09_14510 SM00382 ATPases associated with a variety of cellular activities DDT09_14515 SM00387 Histidine kinase-like ATPases DDT09_14520 SM00448 cheY-homologous receiver domain DDT09_14520 SM00862 Transcriptional regulatory protein, C terminal DDT09_14530 SM00382 ATPases associated with a variety of cellular activities DDT09_14550 SM00382 ATPases associated with a variety of cellular activities DDT09_14555 SM00345 helix_turn_helix gluconate operon transcriptional repressor DDT09_14565 SM00729 Elongator protein 3, MiaB family, Radical SAM DDT09_14635 SM00382 ATPases associated with a variety of cellular activities DDT09_14675 SM01234 DDT09_14675 DDT09_14680 SM00947 Carbonic anhydrase DDT09_14715 SM00382 ATPases associated with a variety of cellular activities DDT09_14725 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain DDT09_14890 SM00244 prohibitin homologues DDT09_14935 SM00047 Lysozyme subfamily 2 DDT09_14945 SM00835 Cupin DDT09_14980 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DDT09_14980 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DDT09_14980 SM00319 Homologues of the ligand binding domain of Tar DDT09_14985 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DDT09_14985 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DDT09_14985 SM00319 Homologues of the ligand binding domain of Tar DDT09_14990 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DDT09_14990 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DDT09_14990 SM00319 Homologues of the ligand binding domain of Tar DDT09_14995 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DDT09_14995 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DDT09_14995 SM00319 Homologues of the ligand binding domain of Tar DDT09_15020 SM00642 Alpha-amylase domain DDT09_15025 SM01091 Transporter associated domain DDT09_15095 SM00316 Ribosomal protein S1-like RNA-binding domain DDT09_15105 SM00344 helix_turn_helix ASNC type DDT09_15125 SM00387 Histidine kinase-like ATPases DDT09_15125 SM00388 His Kinase A (phosphoacceptor) domain DDT09_15130 SM01298 DDT09_15130 DDT09_15135 SM00479 DDT09_15135 DDT09_15160 SM00091 PAS domain DDT09_15160 SM00387 Histidine kinase-like ATPases DDT09_15165 SM00448 cheY-homologous receiver domain DDT09_15175 SM00382 ATPases associated with a variety of cellular activities DDT09_15235 SM00421 helix_turn_helix, Lux Regulon DDT09_15235 SM00448 cheY-homologous receiver domain DDT09_15240 SM00387 Histidine kinase-like ATPases DDT09_15270 SM00052 Putative diguanylate phosphodiesterase DDT09_15310 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DDT09_15355 SM01002 Alanine dehydrogenase/PNT, C-terminal domain DDT09_15355 SM01003 Alanine dehydrogenase/PNT, N-terminal domain DDT09_15365 SM00923 MbtH-like protein DDT09_15370 SM00823 Phosphopantetheine attachment site DDT09_15370 SM00824 Thioesterase DDT09_15390 SM00822 DDT09_15390 DDT09_15455 SM01240 DDT09_15455 DDT09_15470 SM00382 ATPases associated with a variety of cellular activities DDT09_15585 SM00729 Elongator protein 3, MiaB family, Radical SAM DDT09_15665 SM00382 ATPases associated with a variety of cellular activities DDT09_15670 SM00345 helix_turn_helix gluconate operon transcriptional repressor DDT09_15670 SM00866 DDT09_15670 DDT09_15700 SM00422 helix_turn_helix, mercury resistance DDT09_15710 SM00752 Horizontally Transferred TransMembrane Domain DDT09_15725 SM00465 GIY-YIG type nucleases (URI domain) DDT09_15775 SM00382 ATPases associated with a variety of cellular activities DDT09_15800 SM00382 ATPases associated with a variety of cellular activities DDT09_15800 SM00930 DDT09_15800 DDT09_15815 SM00493 DDT09_15815 DDT09_15870 SM00347 helix_turn_helix multiple antibiotic resistance protein DDT09_15900 SM00382 ATPases associated with a variety of cellular activities DDT09_15915 SM00822 DDT09_15915 DDT09_15925 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. DDT09_15930 SM00448 cheY-homologous receiver domain DDT09_15930 SM00862 Transcriptional regulatory protein, C terminal DDT09_15935 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DDT09_15935 SM00387 Histidine kinase-like ATPases DDT09_15935 SM00388 His Kinase A (phosphoacceptor) domain DDT09_15975 SM00421 helix_turn_helix, Lux Regulon DDT09_15975 SM00448 cheY-homologous receiver domain DDT09_15980 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DDT09_15980 SM00387 Histidine kinase-like ATPases DDT09_16015 SM00382 ATPases associated with a variety of cellular activities DDT09_16040 SM00387 Histidine kinase-like ATPases DDT09_16040 SM00388 His Kinase A (phosphoacceptor) domain DDT09_16045 SM00448 cheY-homologous receiver domain DDT09_16045 SM00862 Transcriptional regulatory protein, C terminal DDT09_16065 SM00835 Cupin DDT09_16075 SM00382 ATPases associated with a variety of cellular activities DDT09_16140 SM00421 helix_turn_helix, Lux Regulon DDT09_16140 SM00448 cheY-homologous receiver domain DDT09_16150 SM00382 ATPases associated with a variety of cellular activities DDT09_16265 SM00382 ATPases associated with a variety of cellular activities DDT09_16280 SM00062 Bacterial periplasmic substrate-binding proteins DDT09_16285 SM00062 Bacterial periplasmic substrate-binding proteins DDT09_16320 SM00316 Ribosomal protein S1-like RNA-binding domain DDT09_16320 SM00357 Cold shock protein domain DDT09_16320 SM00955 DDT09_16320 DDT09_16335 SM00530 Helix-turn-helix XRE-family like proteins DDT09_16340 SM00530 Helix-turn-helix XRE-family like proteins DDT09_16345 SM00530 Helix-turn-helix XRE-family like proteins DDT09_16355 SM00387 Histidine kinase-like ATPases DDT09_16355 SM00388 His Kinase A (phosphoacceptor) domain DDT09_16360 SM00448 cheY-homologous receiver domain DDT09_16360 SM00862 Transcriptional regulatory protein, C terminal DDT09_16375 SM00382 ATPases associated with a variety of cellular activities DDT09_16395 SM00116 Domain in cystathionine beta-synthase and other proteins. DDT09_16395 SM00382 ATPases associated with a variety of cellular activities DDT09_16420 SM00116 Domain in cystathionine beta-synthase and other proteins. DDT09_16420 SM00382 ATPases associated with a variety of cellular activities DDT09_16455 SM01192 DDT09_16455 DDT09_16455 SM01193 DDT09_16455 DDT09_16480 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DDT09_16495 SM00345 helix_turn_helix gluconate operon transcriptional repressor DDT09_16565 SM00345 helix_turn_helix gluconate operon transcriptional repressor DDT09_16565 SM00895 DDT09_16565 DDT09_16660 SM00530 Helix-turn-helix XRE-family like proteins DDT09_16745 SM00640 Glycosyl hydrolases family 32 DDT09_16755 SM00354 helix_turn _helix lactose operon repressor DDT09_16770 SM00642 Alpha-amylase domain DDT09_16800 SM00642 Alpha-amylase domain DDT09_16805 SM00354 helix_turn _helix lactose operon repressor DDT09_16825 SM00947 Carbonic anhydrase DDT09_16885 SM00028 Tetratricopeptide repeats DDT09_16890 SM00387 Histidine kinase-like ATPases DDT09_16890 SM00388 His Kinase A (phosphoacceptor) domain DDT09_16895 SM00448 cheY-homologous receiver domain DDT09_16895 SM00862 Transcriptional regulatory protein, C terminal DDT09_16900 SM00382 ATPases associated with a variety of cellular activities DDT09_16980 SM00345 helix_turn_helix gluconate operon transcriptional repressor DDT09_16980 SM00866 DDT09_16980 DDT09_17020 SM00382 ATPases associated with a variety of cellular activities DDT09_17025 SM00487 DEAD-like helicases superfamily DDT09_17025 SM00490 helicase superfamily c-terminal domain DDT09_17065 SM00382 ATPases associated with a variety of cellular activities DDT09_17070 SM00823 Phosphopantetheine attachment site DDT09_17075 SM00823 Phosphopantetheine attachment site DDT09_17090 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. DDT09_17100 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. DDT09_17100 SM00245 tail specific protease DDT09_17105 SM00710 Parallel beta-helix repeats DDT09_17115 SM00382 ATPases associated with a variety of cellular activities DDT09_17135 SM00957 SecA DEAD-like domain DDT09_17135 SM00958 SecA preprotein cross-linking domain DDT09_17220 SM00487 DEAD-like helicases superfamily DDT09_17220 SM00490 helicase superfamily c-terminal domain DDT09_17230 SM00421 helix_turn_helix, Lux Regulon DDT09_17230 SM00448 cheY-homologous receiver domain DDT09_17235 SM00387 Histidine kinase-like ATPases DDT09_17275 SM00984 UDP binding domain DDT09_17295 SM00646 DDT09_17295 DDT09_17325 SM00382 ATPases associated with a variety of cellular activities DDT09_17360 SM00047 Lysozyme subfamily 2 DDT09_17360 SM00287 Bacterial SH3 domain homologues DDT09_17420 SM00854 Bacterial capsule synthesis protein PGA_cap DDT09_17455 SM00354 helix_turn _helix lactose operon repressor DDT09_17470 SM00382 ATPases associated with a variety of cellular activities DDT09_17485 SM00287 Bacterial SH3 domain homologues DDT09_17535 SM00903 Flavin reductase like domain DDT09_17550 SM00344 helix_turn_helix ASNC type DDT09_17645 SM00984 UDP binding domain DDT09_17680 SM00487 DEAD-like helicases superfamily DDT09_17680 SM00490 helicase superfamily c-terminal domain DDT09_17690 SM00420 helix_turn_helix, Deoxyribose operon repressor DDT09_17690 SM01134 DDT09_17690 DDT09_17720 SM00028 Tetratricopeptide repeats DDT09_17745 SM00347 helix_turn_helix multiple antibiotic resistance protein DDT09_17775 SM00938 Nitrogen regulatory protein P-II DDT09_17785 SM00014 Acid phosphatase homologues DDT09_17815 SM00155 Phospholipase D. Active site motifs. DDT09_17865 SM00028 Tetratricopeptide repeats DDT09_17870 SM00729 Elongator protein 3, MiaB family, Radical SAM DDT09_17880 SM00327 von Willebrand factor (vWF) type A domain DDT09_17885 SM00327 von Willebrand factor (vWF) type A domain DDT09_17920 SM00382 ATPases associated with a variety of cellular activities DDT09_17980 SM00226 Low molecular weight phosphatase family DDT09_18020 SM00937 DDT09_18020 DDT09_18040 SM00919 Malic enzyme, NAD binding domain DDT09_18040 SM01274 DDT09_18040 DDT09_18055 SM00357 Cold shock protein domain DDT09_18055 SM00382 ATPases associated with a variety of cellular activities DDT09_18055 SM00959 Rho termination factor, N-terminal domain DDT09_18080 SM00448 cheY-homologous receiver domain DDT09_18105 SM00155 Phospholipase D. Active site motifs. DDT09_18120 SM00382 ATPases associated with a variety of cellular activities DDT09_18125 SM00155 Phospholipase D. Active site motifs. DDT09_18150 SM00926 Molybdopterin oxidoreductase Fe4S4 domain DDT09_18165 SM00100 Cyclic nucleotide-monophosphate binding domain DDT09_18165 SM00419 helix_turn_helix, cAMP Regulatory protein DDT09_18175 SM00836 DALR anticodon binding domain DDT09_18175 SM01016 Arginyl tRNA synthetase N terminal dom DDT09_18185 SM00028 Tetratricopeptide repeats DDT09_18195 SM00530 Helix-turn-helix XRE-family like proteins DDT09_18225 SM00421 helix_turn_helix, Lux Regulon DDT09_18265 SM00347 helix_turn_helix multiple antibiotic resistance protein DDT09_18285 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DDT09_18310 SM00382 ATPases associated with a variety of cellular activities DDT09_18425 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DDT09_18430 SM00387 Histidine kinase-like ATPases DDT09_18430 SM00388 His Kinase A (phosphoacceptor) domain DDT09_18450 SM00382 ATPases associated with a variety of cellular activities DDT09_18485 SM00858 DDT09_18485 DDT09_18530 SM00986 Uracil DNA glycosylase superfamily DDT09_18530 SM00987 UreE urease accessory protein, C-terminal domain DDT09_18565 SM00640 Glycosyl hydrolases family 32 DDT09_18575 SM01061 CAT RNA binding domain DDT09_18720 SM00422 helix_turn_helix, mercury resistance DDT09_18730 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase DDT09_18755 SM00347 helix_turn_helix multiple antibiotic resistance protein DDT09_18760 SM00363 S4 RNA-binding domain DDT09_18765 SM00954 Region found in RelA / SpoT proteins DDT09_18860 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DDT09_18905 SM01060 DDT09_18905 DDT09_18925 SM00382 ATPases associated with a variety of cellular activities DDT09_18930 SM00382 ATPases associated with a variety of cellular activities DDT09_18955 SM00382 ATPases associated with a variety of cellular activities DDT09_19020 SM01060 DDT09_19020 DDT09_19035 SM01061 CAT RNA binding domain DDT09_19045 SM00487 DEAD-like helicases superfamily DDT09_19045 SM00490 helicase superfamily c-terminal domain DDT09_19050 SM00656 DDT09_19050 DDT09_19065 SM00487 DEAD-like helicases superfamily DDT09_19065 SM00490 helicase superfamily c-terminal domain DDT09_19110 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain DDT09_19120 SM01133 DDT09_19120 DDT09_19175 SM00382 ATPases associated with a variety of cellular activities DDT09_19180 SM00387 Histidine kinase-like ATPases DDT09_19185 SM00448 cheY-homologous receiver domain DDT09_19185 SM00862 Transcriptional regulatory protein, C terminal DDT09_19190 SM00387 Histidine kinase-like ATPases DDT09_19190 SM00388 His Kinase A (phosphoacceptor) domain DDT09_19195 SM00448 cheY-homologous receiver domain DDT09_19195 SM00862 Transcriptional regulatory protein, C terminal DDT09_19200 SM00382 ATPases associated with a variety of cellular activities DDT09_19270 SM00420 helix_turn_helix, Deoxyribose operon repressor DDT09_19270 SM01134 DDT09_19270 DDT09_19285 SM00387 Histidine kinase-like ATPases DDT09_19300 SM00421 helix_turn_helix, Lux Regulon DDT09_19300 SM00448 cheY-homologous receiver domain DDT09_19325 SM00564 beta-propeller repeat DDT09_19335 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DDT09_19395 SM01092 CO dehydrogenase flavoprotein C-terminal domain DDT09_19400 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DDT09_19480 SM00028 Tetratricopeptide repeats DDT09_19500 SM00382 ATPases associated with a variety of cellular activities DDT09_19505 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. DDT09_19510 SM00382 ATPases associated with a variety of cellular activities DDT09_19530 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DDT09_19530 SM00387 Histidine kinase-like ATPases DDT09_19530 SM00388 His Kinase A (phosphoacceptor) domain DDT09_19535 SM00448 cheY-homologous receiver domain DDT09_19535 SM00862 Transcriptional regulatory protein, C terminal DDT09_19545 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. DDT09_19550 SM00849 Metallo-beta-lactamase superfamily DDT09_19565 SM00091 PAS domain DDT09_19565 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DDT09_19565 SM00387 Histidine kinase-like ATPases DDT09_19565 SM00388 His Kinase A (phosphoacceptor) domain DDT09_19570 SM00448 cheY-homologous receiver domain DDT09_19570 SM00862 Transcriptional regulatory protein, C terminal DDT09_19600 SM00788 Adenylosuccinate synthetase DDT09_19610 SM00382 ATPases associated with a variety of cellular activities DDT09_19675 SM00267 diguanylate cyclase DDT09_19700 SM01131 DDT09_19700 DDT09_19715 SM00640 Glycosyl hydrolases family 32 DDT09_19720 SM00345 helix_turn_helix gluconate operon transcriptional repressor DDT09_19720 SM00895 DDT09_19720 DDT09_19740 SM00422 helix_turn_helix, mercury resistance DDT09_19775 SM00347 helix_turn_helix multiple antibiotic resistance protein DDT09_19785 SM00347 helix_turn_helix multiple antibiotic resistance protein DDT09_19815 SM00345 helix_turn_helix gluconate operon transcriptional repressor DDT09_19860 SM00857 Resolvase, N terminal domain DDT09_19865 SM00028 Tetratricopeptide repeats DDT09_19990 SM00530 Helix-turn-helix XRE-family like proteins DDT09_20035 SM00354 helix_turn _helix lactose operon repressor DDT09_20050 SM00342 helix_turn_helix, arabinose operon control protein DDT09_20075 SM00926 Molybdopterin oxidoreductase Fe4S4 domain DDT09_20100 SM00470 ParB-like nuclease domain DDT09_20110 SM00470 ParB-like nuclease domain DDT09_20120 SM01228 DDT09_20120 DDT09_20130 SM00393 Putative single-stranded nucleic acids-binding domain DDT09_20130 SM01245 DDT09_20130