BAMF_0001 SM00382 ATPases associated with a variety of cellular activities BAMF_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain BAMF_0002 SM00480 DNA polymerase III beta subunit BAMF_0006 SM00387 Histidine kinase-like ATPases BAMF_0006 SM00433 TopoisomeraseII BAMF_0007 SM00434 DNA Topoisomerase IV BAMF_0009 SM00116 Domain in cystathionine beta-synthase and other proteins. BAMF_0009 SM01240 BAMF_0009 BAMF_0010 SM00936 Penicillin-binding protein 5, C-terminal domain BAMF_0017 SM00257 Lysin motif BAMF_0017 SM00636 BAMF_0017 BAMF_0020 SM00382 ATPases associated with a variety of cellular activities BAMF_0022 SM00493 BAMF_0022 BAMF_0035 SM00465 GIY-YIG type nucleases (URI domain) BAMF_0037 SM00966 SpoVT / AbrB like domain BAMF_0040 SM01208 BAMF_0040 BAMF_0041 SM00493 BAMF_0041 BAMF_0042 SM00650 Ribosomal RNA adenine dimethylases BAMF_0051 SM01400 BAMF_0051 BAMF_0055 SM00487 DEAD-like helicases superfamily BAMF_0055 SM00490 helicase superfamily c-terminal domain BAMF_0055 SM00982 BAMF_0055 BAMF_0055 SM01058 CarD-like/TRCF domain BAMF_0056 SM00966 SpoVT / AbrB like domain BAMF_0059 SM00363 S4 RNA-binding domain BAMF_0063 SM00316 Ribosomal protein S1-like RNA-binding domain BAMF_0064 SM00331 Sigma factor PP2C-like phosphatases BAMF_0064 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BAMF_0066 SM00220 Serine/Threonine protein kinases, catalytic domain BAMF_0067 SM00977 TilS substrate C-terminal domain BAMF_0069 SM00382 ATPases associated with a variety of cellular activities BAMF_0078 SM00905 Dihydroneopterin aldolase BAMF_0085 SM00382 ATPases associated with a variety of cellular activities BAMF_0085 SM01086 C-terminal, D2-small domain, of ClpB protein BAMF_0086 SM00382 ATPases associated with a variety of cellular activities BAMF_0088 SM00670 Large family of predicted nucleotide-binding domains BAMF_0094 SM00840 BAMF_0094 BAMF_0095 SM00535 Ribonuclease III family BAMF_0096 SM00967 RNA 2'-O ribose methyltransferase substrate binding BAMF_0101 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BAMF_0101 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BAMF_0102 SM00649 Ribosomal protein L11/L12 BAMF_0108 SM00663 RNA polymerase I subunit A N-terminus BAMF_0112 SM00838 Elongation factor G C-terminus BAMF_0112 SM00889 Elongation factor G, domain IV BAMF_0115 SM01403 BAMF_0115 BAMF_0119 SM01382 BAMF_0119 BAMF_0119 SM01383 BAMF_0119 BAMF_0122 SM00322 K homology RNA-binding domain BAMF_0126 SM01374 BAMF_0126 BAMF_0127 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BAMF_0139 SM00316 Ribosomal protein S1-like RNA-binding domain BAMF_0143 SM00662 RNA polymerases D BAMF_0145 SM00382 ATPases associated with a variety of cellular activities BAMF_0146 SM00382 ATPases associated with a variety of cellular activities BAMF_0153 SM00646 BAMF_0153 BAMF_0156 SM01251 BAMF_0156 BAMF_0161 SM00829 Enoylreductase BAMF_0168 SM00342 helix_turn_helix, arabinose operon control protein BAMF_0190 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMF_0194 SM00421 helix_turn_helix, Lux Regulon BAMF_0194 SM00448 cheY-homologous receiver domain BAMF_0195 SM00382 ATPases associated with a variety of cellular activities BAMF_0209 SM00530 Helix-turn-helix XRE-family like proteins BAMF_0216 SM00450 Rhodanese Homology Domain BAMF_0225 SM00387 Histidine kinase-like ATPases BAMF_0226 SM00448 cheY-homologous receiver domain BAMF_0253 SM00028 Tetratricopeptide repeats BAMF_0255 SM00642 Alpha-amylase domain BAMF_0259 SM00382 ATPases associated with a variety of cellular activities BAMF_0269 SM00116 Domain in cystathionine beta-synthase and other proteins. BAMF_0269 SM00382 ATPases associated with a variety of cellular activities BAMF_0279 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMF_0302 SM00833 Cobalamin synthesis protein cobW C-terminal domain BAMF_0310 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BAMF_0312 SM00823 Phosphopantetheine attachment site BAMF_0313 SM00823 Phosphopantetheine attachment site BAMF_0314 SM00823 Phosphopantetheine attachment site BAMF_0319 SM00382 ATPases associated with a variety of cellular activities BAMF_0321 SM00062 Bacterial periplasmic substrate-binding proteins BAMF_0328 SM00710 Parallel beta-helix repeats BAMF_0335 SM00062 Bacterial periplasmic substrate-binding proteins BAMF_0337 SM00382 ATPases associated with a variety of cellular activities BAMF_0340 SM00382 ATPases associated with a variety of cellular activities BAMF_0342 SM00448 cheY-homologous receiver domain BAMF_0342 SM00862 Transcriptional regulatory protein, C terminal BAMF_0343 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMF_0343 SM00387 Histidine kinase-like ATPases BAMF_0343 SM00388 His Kinase A (phosphoacceptor) domain BAMF_0344 SM00028 Tetratricopeptide repeats BAMF_0350 SM00382 ATPases associated with a variety of cellular activities BAMF_0356 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAMF_0357 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMF_0364 SM00420 helix_turn_helix, Deoxyribose operon repressor BAMF_0375 SM00796 Allophanate hydrolase subunit 1 BAMF_0376 SM00797 Allophanate hydrolase subunit 2 BAMF_0377 SM00346 helix_turn_helix isocitrate lyase regulation BAMF_0391 SM00344 helix_turn_helix ASNC type BAMF_0392 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BAMF_0392 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BAMF_0392 SM00493 BAMF_0392 BAMF_0395 SM00267 diguanylate cyclase BAMF_0402 SM00257 Lysin motif BAMF_0407 SM00028 Tetratricopeptide repeats BAMF_0421 SM00091 PAS domain BAMF_0421 SM00387 Histidine kinase-like ATPases BAMF_0422 SM00448 cheY-homologous receiver domain BAMF_0425 SM00382 ATPases associated with a variety of cellular activities BAMF_0435 SM00487 DEAD-like helicases superfamily BAMF_0435 SM00490 helicase superfamily c-terminal domain BAMF_0441 SM01005 Alanine racemase, C-terminal domain BAMF_0446 SM00387 Histidine kinase-like ATPases BAMF_0447 SM00331 Sigma factor PP2C-like phosphatases BAMF_0451 SM00331 Sigma factor PP2C-like phosphatases BAMF_0451 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BAMF_0452 SM00316 Ribosomal protein S1-like RNA-binding domain BAMF_0452 SM00732 Likely ribonuclease with RNase H fold. BAMF_0454 SM00731 SprT homologues. BAMF_0458 SM00357 Cold shock protein domain BAMF_0463 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMF_0474 SM00342 helix_turn_helix, arabinose operon control protein BAMF_0474 SM00871 Bacterial transcription activator, effector binding domain BAMF_0479 SM00829 Enoylreductase BAMF_0480 SM00422 helix_turn_helix, mercury resistance BAMF_0482 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMF_0487 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMF_0495 SM00382 ATPases associated with a variety of cellular activities BAMF_0500 SM00825 Beta-ketoacyl synthase BAMF_0501 SM00530 Helix-turn-helix XRE-family like proteins BAMF_0504 SM00422 helix_turn_helix, mercury resistance BAMF_0508 SM01329 BAMF_0508 BAMF_0509 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMF_0509 SM00895 BAMF_0509 BAMF_0516 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMF_0516 SM00866 BAMF_0516 BAMF_0517 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMF_0517 SM00895 BAMF_0517 BAMF_0525 SM00829 Enoylreductase BAMF_0532 SM00382 ATPases associated with a variety of cellular activities BAMF_0534 SM00881 CoA binding domain BAMF_0539 SM00883 Chaperonin 10 Kd subunit BAMF_0544 SM00530 Helix-turn-helix XRE-family like proteins BAMF_0545 SM01040 BRO family, N-terminal domain BAMF_0554 SM00382 ATPases associated with a variety of cellular activities BAMF_0590 SM00060 Fibronectin type 3 domain BAMF_0601 SM00257 Lysin motif BAMF_0601 SM00644 BAMF_0601 BAMF_0605 SM00028 Tetratricopeptide repeats BAMF_0605 SM00382 ATPases associated with a variety of cellular activities BAMF_0606 SM00829 Enoylreductase BAMF_0617 SM00829 Enoylreductase BAMF_0627 SM00460 Transglutaminase/protease-like homologues BAMF_0636 SM01001 AIR carboxylase BAMF_0638 SM00998 Adenylosuccinate lyase C-terminus BAMF_0641 SM01211 BAMF_0641 BAMF_0646 SM00798 AICARFT/IMPCHase bienzyme BAMF_0646 SM00851 MGS-like domain BAMF_0647 SM01209 BAMF_0647 BAMF_0647 SM01210 BAMF_0647 BAMF_0648 SM00344 helix_turn_helix ASNC type BAMF_0657 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BAMF_0657 SM00292 breast cancer carboxy-terminal domain BAMF_0657 SM00532 Ligase N family BAMF_0664 SM00845 GatB domain BAMF_0667 SM00046 Diacylglycerol kinase catalytic domain (presumed) BAMF_0669 SM00382 ATPases associated with a variety of cellular activities BAMF_0670 SM00382 ATPases associated with a variety of cellular activities BAMF_0692 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMF_0705 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BAMF_0708 SM00382 ATPases associated with a variety of cellular activities BAMF_0709 SM00422 helix_turn_helix, mercury resistance BAMF_0711 SM00382 ATPases associated with a variety of cellular activities BAMF_0712 SM00487 DEAD-like helicases superfamily BAMF_0712 SM00490 helicase superfamily c-terminal domain BAMF_0717 SM00656 BAMF_0717 BAMF_0722 SM00387 Histidine kinase-like ATPases BAMF_0722 SM00388 His Kinase A (phosphoacceptor) domain BAMF_0722 SM00448 cheY-homologous receiver domain BAMF_0723 SM00448 cheY-homologous receiver domain BAMF_0726 SM00387 Histidine kinase-like ATPases BAMF_0727 SM00448 cheY-homologous receiver domain BAMF_0747 SM00642 Alpha-amylase domain BAMF_0748 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMF_0748 SM00866 BAMF_0748 BAMF_0754 SM00354 helix_turn _helix lactose operon repressor BAMF_0759 SM00226 Low molecular weight phosphatase family BAMF_0774 SM00478 endonuclease III BAMF_0777 SM00382 ATPases associated with a variety of cellular activities BAMF_0778 SM00220 Serine/Threonine protein kinases, catalytic domain BAMF_0778 SM01260 BAMF_0778 BAMF_0782 SM00861 Transketolase, pyrimidine binding domain BAMF_0785 SM00382 ATPases associated with a variety of cellular activities BAMF_0791 SM00382 ATPases associated with a variety of cellular activities BAMF_0792 SM00382 ATPases associated with a variety of cellular activities BAMF_0803 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMF_0817 SM00287 Bacterial SH3 domain homologues BAMF_0827 SM00530 Helix-turn-helix XRE-family like proteins BAMF_0836 SM00382 ATPases associated with a variety of cellular activities BAMF_0866 SM00644 BAMF_0866 BAMF_0869 SM00028 Tetratricopeptide repeats BAMF_0871 SM00478 endonuclease III BAMF_0871 SM00525 BAMF_0871 BAMF_0877 SM00382 ATPases associated with a variety of cellular activities BAMF_0895 SM00493 BAMF_0895 BAMF_0896 SM00530 Helix-turn-helix XRE-family like proteins BAMF_0904 SM00474 3'-5' exonuclease BAMF_0904 SM00482 DNA polymerase A domain BAMF_0913 SM00465 GIY-YIG type nucleases (URI domain) BAMF_0913 SM00496 Intron-encoded nuclease repeat 2 BAMF_0932 SM00530 Helix-turn-helix XRE-family like proteins BAMF_0954 SM00047 Lysozyme subfamily 2 BAMF_0956 SM00710 Parallel beta-helix repeats BAMF_0961 SM00257 Lysin motif BAMF_0961 SM00644 BAMF_0961 BAMF_0975 SM00382 ATPases associated with a variety of cellular activities BAMF_0976 SM00382 ATPases associated with a variety of cellular activities BAMF_0977 SM01060 BAMF_0977 BAMF_0979 SM00382 ATPases associated with a variety of cellular activities BAMF_0980 SM00062 Bacterial periplasmic substrate-binding proteins BAMF_0986 SM00530 Helix-turn-helix XRE-family like proteins BAMF_0988 SM00567 E-Z type HEAT repeats BAMF_0994 SM00763 PrkA AAA domain BAMF_0996 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMF_1002 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMF_1003 SM00382 ATPases associated with a variety of cellular activities BAMF_1004 SM00382 ATPases associated with a variety of cellular activities BAMF_1006 SM00357 Cold shock protein domain BAMF_1008 SM00267 diguanylate cyclase BAMF_1019 SM00116 Domain in cystathionine beta-synthase and other proteins. BAMF_1028 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BAMF_1028 SM00387 Histidine kinase-like ATPases BAMF_1029 SM00421 helix_turn_helix, Lux Regulon BAMF_1029 SM00448 cheY-homologous receiver domain BAMF_1033 SM00257 Lysin motif BAMF_1037 SM00098 Alkaline phosphatase homologues BAMF_1038 SM00257 Lysin motif BAMF_1047 SM00563 Phosphate acyltransferases BAMF_1048 SM01091 Transporter associated domain BAMF_1049 SM00422 helix_turn_helix, mercury resistance BAMF_1051 SM00825 Beta-ketoacyl synthase BAMF_1052 SM01091 Transporter associated domain BAMF_1064 SM00382 ATPases associated with a variety of cellular activities BAMF_1065 SM00382 ATPases associated with a variety of cellular activities BAMF_1074 SM00729 Elongator protein 3, MiaB family, Radical SAM BAMF_1081 SM00382 ATPases associated with a variety of cellular activities BAMF_1085 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BAMF_1092 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMF_1098 SM00382 ATPases associated with a variety of cellular activities BAMF_1113 SM00849 Metallo-beta-lactamase superfamily BAMF_1121 SM00855 Phosphoglycerate mutase family BAMF_1125 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BAMF_1129 SM00914 BAMF_1129 BAMF_1134 SM00894 Excalibur calcium-binding domain BAMF_1142 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMF_1167 SM00342 helix_turn_helix, arabinose operon control protein BAMF_1168 SM00354 helix_turn _helix lactose operon repressor BAMF_1172 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMF_1177 SM00316 Ribosomal protein S1-like RNA-binding domain BAMF_1179 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BAMF_1179 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMF_1192 SM00859 Semialdehyde dehydrogenase, NAD binding domain BAMF_1196 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BAMF_1197 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BAMF_1197 SM01209 BAMF_1197 BAMF_1207 SM00825 Beta-ketoacyl synthase BAMF_1209 SM00382 ATPases associated with a variety of cellular activities BAMF_1210 SM00382 ATPases associated with a variety of cellular activities BAMF_1219 SM00382 ATPases associated with a variety of cellular activities BAMF_1220 SM00382 ATPases associated with a variety of cellular activities BAMF_1232 SM01118 BAMF_1232 BAMF_1234 SM00954 Region found in RelA / SpoT proteins BAMF_1259 SM00849 Metallo-beta-lactamase superfamily BAMF_1261 SM00382 ATPases associated with a variety of cellular activities BAMF_1262 SM00966 SpoVT / AbrB like domain BAMF_1270 SM00860 SMI1 / KNR4 family BAMF_1283 SM00612 BAMF_1283 BAMF_1291 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMF_1297 SM00420 helix_turn_helix, Deoxyribose operon repressor BAMF_1297 SM01134 BAMF_1297 BAMF_1300 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMF_1305 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BAMF_1305 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BAMF_1320 SM00354 helix_turn _helix lactose operon repressor BAMF_1323 SM00448 cheY-homologous receiver domain BAMF_1323 SM00862 Transcriptional regulatory protein, C terminal BAMF_1324 SM00387 Histidine kinase-like ATPases BAMF_1324 SM00388 His Kinase A (phosphoacceptor) domain BAMF_1327 SM00028 Tetratricopeptide repeats BAMF_1329 SM00257 Lysin motif BAMF_1329 SM00644 BAMF_1329 BAMF_1333 SM00530 Helix-turn-helix XRE-family like proteins BAMF_1336 SM00382 ATPases associated with a variety of cellular activities BAMF_1356 SM00257 Lysin motif BAMF_1369 SM00257 Lysin motif BAMF_1369 SM00644 BAMF_1369 BAMF_1378 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BAMF_1383 SM00382 ATPases associated with a variety of cellular activities BAMF_1386 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BAMF_1388 SM00382 ATPases associated with a variety of cellular activities BAMF_1396 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BAMF_1399 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMF_1403 SM00028 Tetratricopeptide repeats BAMF_1406 SM00100 Cyclic nucleotide-monophosphate binding domain BAMF_1411 SM00382 ATPases associated with a variety of cellular activities BAMF_1413 SM00257 Lysin motif BAMF_1413 SM00636 BAMF_1413 BAMF_1415 SM00116 Domain in cystathionine beta-synthase and other proteins. BAMF_1415 SM00924 MgtE intracellular N domain BAMF_1416 SM00422 helix_turn_helix, mercury resistance BAMF_1419 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMF_1422 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen BAMF_1423 SM00052 Putative diguanylate phosphodiesterase BAMF_1423 SM00267 diguanylate cyclase BAMF_1435 SM00091 PAS domain BAMF_1435 SM00387 Histidine kinase-like ATPases BAMF_1435 SM00388 His Kinase A (phosphoacceptor) domain BAMF_1442 SM01007 Class II Aldolase and Adducin N-terminal domain BAMF_1445 SM00387 Histidine kinase-like ATPases BAMF_1445 SM00388 His Kinase A (phosphoacceptor) domain BAMF_1446 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMF_1449 SM00382 ATPases associated with a variety of cellular activities BAMF_1449 SM01086 C-terminal, D2-small domain, of ClpB protein BAMF_1464 SM00354 helix_turn _helix lactose operon repressor BAMF_1465 SM01061 CAT RNA binding domain BAMF_1471 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BAMF_1471 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMF_1475 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BAMF_1475 SM00091 PAS domain BAMF_1475 SM00387 Histidine kinase-like ATPases BAMF_1475 SM00388 His Kinase A (phosphoacceptor) domain BAMF_1478 SM00260 Two component signalling adaptor domain BAMF_1478 SM00448 cheY-homologous receiver domain BAMF_1481 SM00257 Lysin motif BAMF_1485 SM00052 Putative diguanylate phosphodiesterase BAMF_1504 SM00852 Probable molybdopterin binding domain BAMF_1510 SM00382 ATPases associated with a variety of cellular activities BAMF_1512 SM00420 helix_turn_helix, Deoxyribose operon repressor BAMF_1512 SM01134 BAMF_1512 BAMF_1517 SM00382 ATPases associated with a variety of cellular activities BAMF_1522 SM00966 SpoVT / AbrB like domain BAMF_1523 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BAMF_1523 SM00091 PAS domain BAMF_1523 SM00387 Histidine kinase-like ATPases BAMF_1523 SM00388 His Kinase A (phosphoacceptor) domain BAMF_1527 SM00849 Metallo-beta-lactamase superfamily BAMF_1534 SM00861 Transketolase, pyrimidine binding domain BAMF_1551 SM00838 Elongation factor G C-terminus BAMF_1555 SM00670 Large family of predicted nucleotide-binding domains BAMF_1560 SM00878 Biotin carboxylase C-terminal domain BAMF_1569 SM00116 Domain in cystathionine beta-synthase and other proteins. BAMF_1590 SM00740 BAMF_1590 BAMF_1591 SM00740 BAMF_1591 BAMF_1599 SM00842 Cell division protein FtsA BAMF_1600 SM00864 Tubulin/FtsZ family, GTPase domain BAMF_1600 SM00865 Tubulin/FtsZ family, C-terminal domain BAMF_1605 SM00382 ATPases associated with a variety of cellular activities BAMF_1612 SM00363 S4 RNA-binding domain BAMF_1617 SM00363 S4 RNA-binding domain BAMF_1622 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BAMF_1623 SM00851 MGS-like domain BAMF_1623 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BAMF_1626 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BAMF_1635 SM00642 Alpha-amylase domain BAMF_1637 SM00831 Cation transporter/ATPase, N-terminus BAMF_1640 SM00072 Guanylate kinase homologues. BAMF_1641 SM01409 BAMF_1641 BAMF_1643 SM00487 DEAD-like helicases superfamily BAMF_1643 SM00490 helicase superfamily c-terminal domain BAMF_1648 SM00331 Sigma factor PP2C-like phosphatases BAMF_1648 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BAMF_1649 SM00220 Serine/Threonine protein kinases, catalytic domain BAMF_1649 SM00740 BAMF_1649 BAMF_1652 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain BAMF_1656 SM01120 BAMF_1656 BAMF_1656 SM01121 BAMF_1656 BAMF_1659 SM00487 DEAD-like helicases superfamily BAMF_1659 SM00490 helicase superfamily c-terminal domain BAMF_1662 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BAMF_1663 SM00822 BAMF_1663 BAMF_1665 SM00358 Double-stranded RNA binding motif BAMF_1665 SM00535 Ribonuclease III family BAMF_1666 SM00968 SMC proteins Flexible Hinge Domain BAMF_1667 SM00382 ATPases associated with a variety of cellular activities BAMF_1667 SM00962 SRP54-type protein, GTPase domain BAMF_1667 SM00963 SRP54-type protein, helical bundle domain BAMF_1669 SM00382 ATPases associated with a variety of cellular activities BAMF_1669 SM00962 SRP54-type protein, GTPase domain BAMF_1669 SM00963 SRP54-type protein, helical bundle domain BAMF_1681 SM00881 CoA binding domain BAMF_1683 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BAMF_1683 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BAMF_1683 SM00493 BAMF_1683 BAMF_1687 SM00382 ATPases associated with a variety of cellular activities BAMF_1687 SM01086 C-terminal, D2-small domain, of ClpB protein BAMF_1695 SM00382 ATPases associated with a variety of cellular activities BAMF_1705 SM00448 cheY-homologous receiver domain BAMF_1712 SM00962 SRP54-type protein, GTPase domain BAMF_1714 SM00448 cheY-homologous receiver domain BAMF_1715 SM00073 Histidine Phosphotransfer domain BAMF_1715 SM00260 Two component signalling adaptor domain BAMF_1715 SM00387 Histidine kinase-like ATPases BAMF_1715 SM01231 BAMF_1715 BAMF_1716 SM00260 Two component signalling adaptor domain BAMF_1728 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BAMF_1730 SM00479 BAMF_1730 BAMF_1730 SM00481 DNA polymerase alpha chain like domain BAMF_1732 SM00316 Ribosomal protein S1-like RNA-binding domain BAMF_1732 SM00322 K homology RNA-binding domain BAMF_1739 SM00904 Riboflavin kinase BAMF_1740 SM01387 BAMF_1740 BAMF_1741 SM00316 Ribosomal protein S1-like RNA-binding domain BAMF_1741 SM00322 K homology RNA-binding domain BAMF_1747 SM00859 Semialdehyde dehydrogenase, NAD binding domain BAMF_1749 SM01130 BAMF_1749 BAMF_1750 SM00849 Metallo-beta-lactamase superfamily BAMF_1753 SM00382 ATPases associated with a variety of cellular activities BAMF_1753 SM00843 BAMF_1753 BAMF_1754 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMF_1754 SM00866 BAMF_1754 BAMF_1756 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMF_1763 SM00530 Helix-turn-helix XRE-family like proteins BAMF_1765 SM00852 Probable molybdopterin binding domain BAMF_1766 SM00382 ATPases associated with a variety of cellular activities BAMF_1768 SM00322 K homology RNA-binding domain BAMF_1768 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BAMF_1771 SM00829 Enoylreductase BAMF_1773 SM00729 Elongator protein 3, MiaB family, Radical SAM BAMF_1776 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BAMF_1776 SM00534 ATPase domain of DNA mismatch repair MUTS family BAMF_1777 SM00853 MutL C terminal dimerisation domain BAMF_1777 SM01340 BAMF_1777 BAMF_1778 SM00849 Metallo-beta-lactamase superfamily BAMF_1779 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BAMF_1780 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BAMF_1781 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BAMF_1786 SM00822 BAMF_1786 BAMF_1786 SM00823 Phosphopantetheine attachment site BAMF_1786 SM00825 Beta-ketoacyl synthase BAMF_1786 SM00826 BAMF_1786 BAMF_1786 SM01294 BAMF_1786 BAMF_1787 SM00822 BAMF_1787 BAMF_1787 SM00823 Phosphopantetheine attachment site BAMF_1787 SM00825 Beta-ketoacyl synthase BAMF_1787 SM00826 BAMF_1787 BAMF_1787 SM01294 BAMF_1787 BAMF_1788 SM00822 BAMF_1788 BAMF_1788 SM00823 Phosphopantetheine attachment site BAMF_1788 SM00825 Beta-ketoacyl synthase BAMF_1788 SM00826 BAMF_1788 BAMF_1788 SM01294 BAMF_1788 BAMF_1789 SM00822 BAMF_1789 BAMF_1789 SM00823 Phosphopantetheine attachment site BAMF_1789 SM00825 Beta-ketoacyl synthase BAMF_1789 SM00826 BAMF_1789 BAMF_1789 SM01294 BAMF_1789 BAMF_1790 SM00823 Phosphopantetheine attachment site BAMF_1790 SM00825 Beta-ketoacyl synthase BAMF_1790 SM01294 BAMF_1790 BAMF_1810 SM00646 BAMF_1810 BAMF_1811 SM00382 ATPases associated with a variety of cellular activities BAMF_1814 SM00422 helix_turn_helix, mercury resistance BAMF_1815 SM01230 BAMF_1815 BAMF_1818 SM00318 Staphylococcal nuclease homologues BAMF_1818 SM00894 Excalibur calcium-binding domain BAMF_1819 SM00860 SMI1 / KNR4 family BAMF_1822 SM00860 SMI1 / KNR4 family BAMF_1833 SM00829 Enoylreductase BAMF_1836 SM00857 Resolvase, N terminal domain BAMF_1845 SM00155 Phospholipase D. Active site motifs. BAMF_1848 SM00829 Enoylreductase BAMF_1862 SM00710 Parallel beta-helix repeats BAMF_1872 SM00257 Lysin motif BAMF_1873 SM00857 Resolvase, N terminal domain BAMF_1875 SM00861 Transketolase, pyrimidine binding domain BAMF_1880 SM00448 cheY-homologous receiver domain BAMF_1894 SM01207 BAMF_1894 BAMF_1895 SM00881 CoA binding domain BAMF_1896 SM00387 Histidine kinase-like ATPases BAMF_1896 SM00433 TopoisomeraseII BAMF_1897 SM00434 DNA Topoisomerase IV BAMF_1907 SM00387 Histidine kinase-like ATPases BAMF_1907 SM00388 His Kinase A (phosphoacceptor) domain BAMF_1908 SM00448 cheY-homologous receiver domain BAMF_1908 SM00862 Transcriptional regulatory protein, C terminal BAMF_1910 SM00606 Cellulose Binding Domain Type IV BAMF_1911 SM00823 Phosphopantetheine attachment site BAMF_1911 SM00824 Thioesterase BAMF_1912 SM00823 Phosphopantetheine attachment site BAMF_1913 SM00823 Phosphopantetheine attachment site BAMF_1913 SM00825 Beta-ketoacyl synthase BAMF_1914 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BAMF_1917 SM00882 Coenzyme A transferase BAMF_1918 SM00882 Coenzyme A transferase BAMF_1920 SM00729 Elongator protein 3, MiaB family, Radical SAM BAMF_1920 SM00876 Biotin and Thiamin Synthesis associated domain BAMF_1932 SM00878 Biotin carboxylase C-terminal domain BAMF_1938 SM00824 Thioesterase BAMF_1939 SM00823 Phosphopantetheine attachment site BAMF_1948 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAMF_1949 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BAMF_1953 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BAMF_1956 SM00822 BAMF_1956 BAMF_1959 SM00155 Phospholipase D. Active site motifs. BAMF_1967 SM00857 Resolvase, N terminal domain BAMF_1972 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BAMF_1975 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMF_1979 SM00342 helix_turn_helix, arabinose operon control protein BAMF_1981 SM00849 Metallo-beta-lactamase superfamily BAMF_1983 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAMF_1990 SM00257 Lysin motif BAMF_1991 SM00341 Helicase and RNase D C-terminal BAMF_1991 SM00487 DEAD-like helicases superfamily BAMF_1991 SM00490 helicase superfamily c-terminal domain BAMF_1991 SM00956 BAMF_1991 BAMF_2007 SM00849 Metallo-beta-lactamase superfamily BAMF_2009 SM00861 Transketolase, pyrimidine binding domain BAMF_2010 SM00327 von Willebrand factor (vWF) type A domain BAMF_2011 SM00382 ATPases associated with a variety of cellular activities BAMF_2013 SM00257 Lysin motif BAMF_2033 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMF_2033 SM00866 BAMF_2033 BAMF_2034 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BAMF_2034 SM00245 tail specific protease BAMF_2041 SM00014 Acid phosphatase homologues BAMF_2051 SM00882 Coenzyme A transferase BAMF_2052 SM00882 Coenzyme A transferase BAMF_2055 SM00871 Bacterial transcription activator, effector binding domain BAMF_2069 SM00857 Resolvase, N terminal domain BAMF_2073 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMF_2088 SM00567 E-Z type HEAT repeats BAMF_2088 SM00932 Scaffold protein Nfu/NifU N terminal BAMF_2089 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BAMF_2093 SM00357 Cold shock protein domain BAMF_2101 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BAMF_2101 SM00475 5'-3' exonuclease BAMF_2113 SM00491 BAMF_2113 BAMF_2117 SM00981 BAMF_2117 BAMF_2122 SM00487 DEAD-like helicases superfamily BAMF_2122 SM00490 helicase superfamily c-terminal domain BAMF_2132 SM00060 Fibronectin type 3 domain BAMF_2134 SM00478 endonuclease III BAMF_2134 SM00525 BAMF_2134 BAMF_2140 SM00479 BAMF_2140 BAMF_2140 SM00487 DEAD-like helicases superfamily BAMF_2140 SM00491 BAMF_2140 BAMF_2148 SM00851 MGS-like domain BAMF_2152 SM00835 Cupin BAMF_2159 SM00914 BAMF_2159 BAMF_2160 SM00028 Tetratricopeptide repeats BAMF_2173 SM00138 Methyltransferase, chemotaxis proteins BAMF_2174 SM00562 BAMF_2174 BAMF_2180 SM00411 bacterial (prokaryotic) histone like domain BAMF_2189 SM00316 Ribosomal protein S1-like RNA-binding domain BAMF_2197 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BAMF_2201 SM00257 Lysin motif BAMF_2203 SM00487 DEAD-like helicases superfamily BAMF_2203 SM00490 helicase superfamily c-terminal domain BAMF_2210 SM00091 PAS domain BAMF_2210 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMF_2210 SM00387 Histidine kinase-like ATPases BAMF_2210 SM00388 His Kinase A (phosphoacceptor) domain BAMF_2211 SM00448 cheY-homologous receiver domain BAMF_2211 SM00862 Transcriptional regulatory protein, C terminal BAMF_2215 SM00363 S4 RNA-binding domain BAMF_2241 SM00387 Histidine kinase-like ATPases BAMF_2243 SM00936 Penicillin-binding protein 5, C-terminal domain BAMF_2252 SM00919 Malic enzyme, NAD binding domain BAMF_2252 SM01274 BAMF_2252 BAMF_2255 SM00870 BAMF_2255 BAMF_2256 SM00530 Helix-turn-helix XRE-family like proteins BAMF_2276 SM00849 Metallo-beta-lactamase superfamily BAMF_2286 SM01350 BAMF_2286 BAMF_2295 SM00382 ATPases associated with a variety of cellular activities BAMF_2297 SM00062 Bacterial periplasmic substrate-binding proteins BAMF_2297 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BAMF_2299 SM00046 Diacylglycerol kinase catalytic domain (presumed) BAMF_2301 SM00861 Transketolase, pyrimidine binding domain BAMF_2305 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BAMF_2307 SM00091 PAS domain BAMF_2307 SM00382 ATPases associated with a variety of cellular activities BAMF_2317 SM00646 BAMF_2317 BAMF_2320 SM00530 Helix-turn-helix XRE-family like proteins BAMF_2325 SM01005 Alanine racemase, C-terminal domain BAMF_2326 SM00448 cheY-homologous receiver domain BAMF_2327 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BAMF_2330 SM00363 S4 RNA-binding domain BAMF_2331 SM00861 Transketolase, pyrimidine binding domain BAMF_2338 SM00878 Biotin carboxylase C-terminal domain BAMF_2347 SM00382 ATPases associated with a variety of cellular activities BAMF_2349 SM00841 Elongation factor P, C-terminal BAMF_2349 SM01185 BAMF_2349 BAMF_2355 SM00529 Helix-turn-helix diphteria tox regulatory element BAMF_2357 SM00450 Rhodanese Homology Domain BAMF_2361 SM00487 DEAD-like helicases superfamily BAMF_2361 SM00490 helicase superfamily c-terminal domain BAMF_2364 SM00530 Helix-turn-helix XRE-family like proteins BAMF_2375 SM00382 ATPases associated with a variety of cellular activities BAMF_2377 SM01091 Transporter associated domain BAMF_2381 SM00849 Metallo-beta-lactamase superfamily BAMF_2385 SM00631 BAMF_2385 BAMF_2394 SM00382 ATPases associated with a variety of cellular activities BAMF_2395 SM00382 ATPases associated with a variety of cellular activities BAMF_2404 SM00257 Lysin motif BAMF_2411 SM00518 AP endonuclease family 2 BAMF_2412 SM00487 DEAD-like helicases superfamily BAMF_2412 SM00490 helicase superfamily c-terminal domain BAMF_2419 SM00400 zinc finger BAMF_2419 SM00493 BAMF_2419 BAMF_2422 SM00116 Domain in cystathionine beta-synthase and other proteins. BAMF_2430 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BAMF_2440 SM00729 Elongator protein 3, MiaB family, Radical SAM BAMF_2443 SM00271 DnaJ molecular chaperone homology domain BAMF_2447 SM00729 Elongator protein 3, MiaB family, Radical SAM BAMF_2448 SM00838 Elongation factor G C-terminus BAMF_2455 SM00849 Metallo-beta-lactamase superfamily BAMF_2457 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BAMF_2461 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BAMF_2463 SM01103 BAMF_2463 BAMF_2497 SM00422 helix_turn_helix, mercury resistance BAMF_2518 SM00849 Metallo-beta-lactamase superfamily BAMF_2530 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BAMF_2530 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BAMF_2547 SM00732 Likely ribonuclease with RNase H fold. BAMF_2549 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BAMF_2551 SM00382 ATPases associated with a variety of cellular activities BAMF_2552 SM00062 Bacterial periplasmic substrate-binding proteins BAMF_2552 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BAMF_2558 SM00382 ATPases associated with a variety of cellular activities BAMF_2559 SM00028 Tetratricopeptide repeats BAMF_2563 SM00382 ATPases associated with a variety of cellular activities BAMF_2568 SM00287 Bacterial SH3 domain homologues BAMF_2568 SM00646 BAMF_2568 BAMF_2570 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BAMF_2570 SM00954 Region found in RelA / SpoT proteins BAMF_2580 SM01323 BAMF_2580 BAMF_2584 SM00382 ATPases associated with a variety of cellular activities BAMF_2585 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BAMF_2590 SM00257 Lysin motif BAMF_2599 SM01317 BAMF_2599 BAMF_2618 SM00257 Lysin motif BAMF_2620 SM01004 Delta-aminolevulinic acid dehydratase BAMF_2627 SM00382 ATPases associated with a variety of cellular activities BAMF_2627 SM00464 Found in ATP-dependent protease La (LON) BAMF_2628 SM00382 ATPases associated with a variety of cellular activities BAMF_2629 SM00382 ATPases associated with a variety of cellular activities BAMF_2629 SM00994 ClpX C4-type zinc finger BAMF_2629 SM01086 C-terminal, D2-small domain, of ClpB protein BAMF_2634 SM01329 BAMF_2634 BAMF_2635 SM00917 LeuA allosteric (dimerisation) domain BAMF_2644 SM00909 Sporulation and spore germination BAMF_2646 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMF_2647 SM00421 helix_turn_helix, Lux Regulon BAMF_2654 SM00465 GIY-YIG type nucleases (URI domain) BAMF_2656 SM00813 Alpha-L-arabinofuranosidase C-terminus BAMF_2657 SM00893 Electron transfer flavoprotein domain BAMF_2658 SM00893 Electron transfer flavoprotein domain BAMF_2664 SM00463 Small MutS-related domain BAMF_2664 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BAMF_2664 SM00534 ATPase domain of DNA mismatch repair MUTS family BAMF_2665 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BAMF_2665 SM00481 DNA polymerase alpha chain like domain BAMF_2665 SM00483 DNA polymerase X family BAMF_2669 SM00873 B3/4 domain BAMF_2669 SM00874 tRNA synthetase B5 domain BAMF_2669 SM00896 Ferredoxin-fold anticodon binding domain BAMF_2671 SM00967 RNA 2'-O ribose methyltransferase substrate binding BAMF_2677 SM00813 Alpha-L-arabinofuranosidase C-terminus BAMF_2683 SM01007 Class II Aldolase and Adducin N-terminal domain BAMF_2695 SM00448 cheY-homologous receiver domain BAMF_2695 SM00850 LytTr DNA-binding domain BAMF_2696 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BAMF_2696 SM00387 Histidine kinase-like ATPases BAMF_2698 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BAMF_2701 SM00382 ATPases associated with a variety of cellular activities BAMF_2705 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BAMF_2711 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BAMF_2711 SM01232 BAMF_2711 BAMF_2712 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BAMF_2712 SM00474 3'-5' exonuclease BAMF_2712 SM00475 5'-3' exonuclease BAMF_2712 SM00482 DNA polymerase A domain BAMF_2713 SM00091 PAS domain BAMF_2713 SM00387 Histidine kinase-like ATPases BAMF_2713 SM00388 His Kinase A (phosphoacceptor) domain BAMF_2714 SM00448 cheY-homologous receiver domain BAMF_2714 SM00862 Transcriptional regulatory protein, C terminal BAMF_2716 SM01329 BAMF_2716 BAMF_2725 SM00919 Malic enzyme, NAD binding domain BAMF_2725 SM01274 BAMF_2725 BAMF_2726 SM00481 DNA polymerase alpha chain like domain BAMF_2732 SM00116 Domain in cystathionine beta-synthase and other proteins. BAMF_2733 SM00849 Metallo-beta-lactamase superfamily BAMF_2738 SM00852 Probable molybdopterin binding domain BAMF_2750 SM00981 BAMF_2750 BAMF_2757 SM00267 diguanylate cyclase BAMF_2758 SM00363 S4 RNA-binding domain BAMF_2758 SM01390 BAMF_2758 BAMF_2767 SM00363 S4 RNA-binding domain BAMF_2770 SM00116 Domain in cystathionine beta-synthase and other proteins. BAMF_2774 SM00354 helix_turn _helix lactose operon repressor BAMF_2775 SM00830 Chorismate mutase type II BAMF_2780 SM00382 ATPases associated with a variety of cellular activities BAMF_2780 SM00843 BAMF_2780 BAMF_2787 SM00919 Malic enzyme, NAD binding domain BAMF_2787 SM01274 BAMF_2787 BAMF_2788 SM01274 BAMF_2788 BAMF_2789 SM00849 Metallo-beta-lactamase superfamily BAMF_2793 SM00046 Diacylglycerol kinase catalytic domain (presumed) BAMF_2800 SM00382 ATPases associated with a variety of cellular activities BAMF_2801 SM00420 helix_turn_helix, Deoxyribose operon repressor BAMF_2802 SM00363 S4 RNA-binding domain BAMF_2813 SM00450 Rhodanese Homology Domain BAMF_2816 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BAMF_2816 SM00091 PAS domain BAMF_2820 SM00382 ATPases associated with a variety of cellular activities BAMF_2821 SM00387 Histidine kinase-like ATPases BAMF_2822 SM00448 cheY-homologous receiver domain BAMF_2822 SM00862 Transcriptional regulatory protein, C terminal BAMF_2824 SM00382 ATPases associated with a variety of cellular activities BAMF_2828 SM00382 ATPases associated with a variety of cellular activities BAMF_2829 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMF_2831 SM00729 Elongator protein 3, MiaB family, Radical SAM BAMF_2843 SM00382 ATPases associated with a variety of cellular activities BAMF_2851 SM01234 BAMF_2851 BAMF_2852 SM00947 Carbonic anhydrase BAMF_2858 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BAMF_2867 SM00244 prohibitin homologues BAMF_2876 SM00047 Lysozyme subfamily 2 BAMF_2881 SM00028 Tetratricopeptide repeats BAMF_2894 SM00710 Parallel beta-helix repeats BAMF_2912 SM01040 BRO family, N-terminal domain BAMF_2920 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BAMF_2920 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMF_2920 SM00319 Homologues of the ligand binding domain of Tar BAMF_2921 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BAMF_2921 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMF_2921 SM00319 Homologues of the ligand binding domain of Tar BAMF_2922 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BAMF_2922 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMF_2922 SM00319 Homologues of the ligand binding domain of Tar BAMF_2923 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BAMF_2923 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMF_2923 SM00319 Homologues of the ligand binding domain of Tar BAMF_2927 SM00642 Alpha-amylase domain BAMF_2928 SM00116 Domain in cystathionine beta-synthase and other proteins. BAMF_2928 SM01091 Transporter associated domain BAMF_2939 SM00316 Ribosomal protein S1-like RNA-binding domain BAMF_2941 SM00344 helix_turn_helix ASNC type BAMF_2945 SM00387 Histidine kinase-like ATPases BAMF_2945 SM00388 His Kinase A (phosphoacceptor) domain BAMF_2946 SM01298 BAMF_2946 BAMF_2947 SM00479 BAMF_2947 BAMF_2952 SM00091 PAS domain BAMF_2952 SM00387 Histidine kinase-like ATPases BAMF_2953 SM00448 cheY-homologous receiver domain BAMF_2955 SM00382 ATPases associated with a variety of cellular activities BAMF_2967 SM00421 helix_turn_helix, Lux Regulon BAMF_2967 SM00448 cheY-homologous receiver domain BAMF_2968 SM00387 Histidine kinase-like ATPases BAMF_2973 SM00052 Putative diguanylate phosphodiesterase BAMF_2980 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BAMF_2989 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BAMF_2989 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BAMF_2991 SM00923 MbtH-like protein BAMF_2992 SM00823 Phosphopantetheine attachment site BAMF_2992 SM00824 Thioesterase BAMF_3009 SM01240 BAMF_3009 BAMF_3012 SM00382 ATPases associated with a variety of cellular activities BAMF_3036 SM00729 Elongator protein 3, MiaB family, Radical SAM BAMF_3050 SM00382 ATPases associated with a variety of cellular activities BAMF_3051 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMF_3051 SM00866 BAMF_3051 BAMF_3057 SM00422 helix_turn_helix, mercury resistance BAMF_3059 SM00752 Horizontally Transferred TransMembrane Domain BAMF_3062 SM00465 GIY-YIG type nucleases (URI domain) BAMF_3069 SM00644 BAMF_3069 BAMF_3074 SM00710 Parallel beta-helix repeats BAMF_3075 SM00047 Lysozyme subfamily 2 BAMF_3093 SM00487 DEAD-like helicases superfamily BAMF_3095 SM00482 DNA polymerase A domain BAMF_3104 SM00530 Helix-turn-helix XRE-family like proteins BAMF_3110 SM00382 ATPases associated with a variety of cellular activities BAMF_3115 SM00382 ATPases associated with a variety of cellular activities BAMF_3115 SM00930 BAMF_3115 BAMF_3129 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMF_3129 SM00529 Helix-turn-helix diphteria tox regulatory element BAMF_3134 SM00382 ATPases associated with a variety of cellular activities BAMF_3137 SM00822 BAMF_3137 BAMF_3139 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BAMF_3140 SM00448 cheY-homologous receiver domain BAMF_3140 SM00862 Transcriptional regulatory protein, C terminal BAMF_3141 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMF_3141 SM00387 Histidine kinase-like ATPases BAMF_3141 SM00388 His Kinase A (phosphoacceptor) domain BAMF_3149 SM00421 helix_turn_helix, Lux Regulon BAMF_3149 SM00448 cheY-homologous receiver domain BAMF_3150 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMF_3150 SM00387 Histidine kinase-like ATPases BAMF_3157 SM00382 ATPases associated with a variety of cellular activities BAMF_3162 SM00387 Histidine kinase-like ATPases BAMF_3162 SM00388 His Kinase A (phosphoacceptor) domain BAMF_3163 SM00448 cheY-homologous receiver domain BAMF_3163 SM00862 Transcriptional regulatory protein, C terminal BAMF_3167 SM00835 Cupin BAMF_3169 SM00382 ATPases associated with a variety of cellular activities BAMF_3182 SM00421 helix_turn_helix, Lux Regulon BAMF_3182 SM00448 cheY-homologous receiver domain BAMF_3184 SM00382 ATPases associated with a variety of cellular activities BAMF_3206 SM00382 ATPases associated with a variety of cellular activities BAMF_3209 SM00062 Bacterial periplasmic substrate-binding proteins BAMF_3210 SM00062 Bacterial periplasmic substrate-binding proteins BAMF_3216 SM00316 Ribosomal protein S1-like RNA-binding domain BAMF_3216 SM00357 Cold shock protein domain BAMF_3216 SM00955 BAMF_3216 BAMF_3219 SM00530 Helix-turn-helix XRE-family like proteins BAMF_3220 SM00530 Helix-turn-helix XRE-family like proteins BAMF_3221 SM00530 Helix-turn-helix XRE-family like proteins BAMF_3223 SM00387 Histidine kinase-like ATPases BAMF_3223 SM00388 His Kinase A (phosphoacceptor) domain BAMF_3224 SM00448 cheY-homologous receiver domain BAMF_3224 SM00862 Transcriptional regulatory protein, C terminal BAMF_3227 SM00382 ATPases associated with a variety of cellular activities BAMF_3231 SM00116 Domain in cystathionine beta-synthase and other proteins. BAMF_3231 SM00382 ATPases associated with a variety of cellular activities BAMF_3236 SM00116 Domain in cystathionine beta-synthase and other proteins. BAMF_3236 SM00382 ATPases associated with a variety of cellular activities BAMF_3250 SM00984 UDP binding domain BAMF_3252 SM01192 BAMF_3252 BAMF_3252 SM01193 BAMF_3252 BAMF_3256 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BAMF_3259 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMF_3271 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMF_3271 SM00895 BAMF_3271 BAMF_3290 SM00530 Helix-turn-helix XRE-family like proteins BAMF_3295 SM00849 Metallo-beta-lactamase superfamily BAMF_3305 SM00640 Glycosyl hydrolases family 32 BAMF_3307 SM00354 helix_turn _helix lactose operon repressor BAMF_3316 SM00947 Carbonic anhydrase BAMF_3328 SM00028 Tetratricopeptide repeats BAMF_3329 SM00387 Histidine kinase-like ATPases BAMF_3329 SM00388 His Kinase A (phosphoacceptor) domain BAMF_3330 SM00448 cheY-homologous receiver domain BAMF_3330 SM00862 Transcriptional regulatory protein, C terminal BAMF_3331 SM00382 ATPases associated with a variety of cellular activities BAMF_3347 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMF_3347 SM00866 BAMF_3347 BAMF_3355 SM00382 ATPases associated with a variety of cellular activities BAMF_3356 SM00487 DEAD-like helicases superfamily BAMF_3356 SM00490 helicase superfamily c-terminal domain BAMF_3362 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BAMF_3364 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BAMF_3364 SM00245 tail specific protease BAMF_3365 SM00710 Parallel beta-helix repeats BAMF_3365 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses BAMF_3367 SM00382 ATPases associated with a variety of cellular activities BAMF_3370 SM00937 BAMF_3370 BAMF_3371 SM00957 SecA DEAD-like domain BAMF_3371 SM00958 SecA preprotein cross-linking domain BAMF_3388 SM00487 DEAD-like helicases superfamily BAMF_3388 SM00490 helicase superfamily c-terminal domain BAMF_3390 SM00421 helix_turn_helix, Lux Regulon BAMF_3390 SM00448 cheY-homologous receiver domain BAMF_3391 SM00387 Histidine kinase-like ATPases BAMF_3399 SM00984 UDP binding domain BAMF_3403 SM00646 BAMF_3403 BAMF_3409 SM00382 ATPases associated with a variety of cellular activities BAMF_3416 SM00047 Lysozyme subfamily 2 BAMF_3416 SM00287 Bacterial SH3 domain homologues BAMF_3428 SM00854 Bacterial capsule synthesis protein PGA_cap BAMF_3436 SM00354 helix_turn _helix lactose operon repressor BAMF_3439 SM00382 ATPases associated with a variety of cellular activities BAMF_3442 SM00287 Bacterial SH3 domain homologues BAMF_3452 SM00903 Flavin reductase like domain BAMF_3455 SM00344 helix_turn_helix ASNC type BAMF_3460 SM00860 SMI1 / KNR4 family BAMF_3467 SM00984 UDP binding domain BAMF_3473 SM00487 DEAD-like helicases superfamily BAMF_3473 SM00490 helicase superfamily c-terminal domain BAMF_3475 SM00420 helix_turn_helix, Deoxyribose operon repressor BAMF_3475 SM01134 BAMF_3475 BAMF_3486 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMF_3492 SM00938 Nitrogen regulatory protein P-II BAMF_3494 SM00014 Acid phosphatase homologues BAMF_3500 SM00155 Phospholipase D. Active site motifs. BAMF_3508 SM00729 Elongator protein 3, MiaB family, Radical SAM BAMF_3510 SM00327 von Willebrand factor (vWF) type A domain BAMF_3511 SM00327 von Willebrand factor (vWF) type A domain BAMF_3518 SM00382 ATPases associated with a variety of cellular activities BAMF_3530 SM00226 Low molecular weight phosphatase family BAMF_3538 SM00937 BAMF_3538 BAMF_3542 SM00919 Malic enzyme, NAD binding domain BAMF_3542 SM01274 BAMF_3542 BAMF_3545 SM00357 Cold shock protein domain BAMF_3545 SM00382 ATPases associated with a variety of cellular activities BAMF_3545 SM00959 Rho termination factor, N-terminal domain BAMF_3550 SM00448 cheY-homologous receiver domain BAMF_3555 SM00155 Phospholipase D. Active site motifs. BAMF_3558 SM00382 ATPases associated with a variety of cellular activities BAMF_3559 SM00155 Phospholipase D. Active site motifs. BAMF_3563 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BAMF_3566 SM00100 Cyclic nucleotide-monophosphate binding domain BAMF_3568 SM00836 DALR anticodon binding domain BAMF_3568 SM01016 Arginyl tRNA synthetase N terminal dom BAMF_3573 SM00028 Tetratricopeptide repeats BAMF_3581 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMF_3584 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BAMF_3589 SM00382 ATPases associated with a variety of cellular activities BAMF_3600 SM00530 Helix-turn-helix XRE-family like proteins BAMF_3614 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BAMF_3622 SM00858 BAMF_3622 BAMF_3631 SM00986 Uracil DNA glycosylase superfamily BAMF_3631 SM00987 UreE urease accessory protein, C-terminal domain BAMF_3636 SM00640 Glycosyl hydrolases family 32 BAMF_3638 SM01061 CAT RNA binding domain BAMF_3645 SM00886 Stress responsive A/B Barrel Domain BAMF_3672 SM00422 helix_turn_helix, mercury resistance BAMF_3674 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BAMF_3679 SM00954 Region found in RelA / SpoT proteins BAMF_3697 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAMF_3706 SM01060 BAMF_3706 BAMF_3710 SM00382 ATPases associated with a variety of cellular activities BAMF_3711 SM00382 ATPases associated with a variety of cellular activities BAMF_3716 SM00382 ATPases associated with a variety of cellular activities BAMF_3730 SM01060 BAMF_3730 BAMF_3733 SM01061 CAT RNA binding domain BAMF_3735 SM00487 DEAD-like helicases superfamily BAMF_3735 SM00490 helicase superfamily c-terminal domain BAMF_3745 SM00656 BAMF_3745 BAMF_3763 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BAMF_3765 SM01133 BAMF_3765 BAMF_3776 SM00382 ATPases associated with a variety of cellular activities BAMF_3777 SM00387 Histidine kinase-like ATPases BAMF_3778 SM00448 cheY-homologous receiver domain BAMF_3778 SM00862 Transcriptional regulatory protein, C terminal BAMF_3789 SM00420 helix_turn_helix, Deoxyribose operon repressor BAMF_3789 SM01134 BAMF_3789 BAMF_3792 SM00387 Histidine kinase-like ATPases BAMF_3794 SM00421 helix_turn_helix, Lux Regulon BAMF_3794 SM00448 cheY-homologous receiver domain BAMF_3799 SM00564 beta-propeller repeat BAMF_3801 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAMF_3813 SM00857 Resolvase, N terminal domain BAMF_3824 SM00155 Phospholipase D. Active site motifs. BAMF_3827 SM01092 CO dehydrogenase flavoprotein C-terminal domain BAMF_3828 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BAMF_3842 SM00028 Tetratricopeptide repeats BAMF_3847 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAMF_3848 SM00382 ATPases associated with a variety of cellular activities BAMF_3851 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMF_3851 SM00387 Histidine kinase-like ATPases BAMF_3851 SM00388 His Kinase A (phosphoacceptor) domain BAMF_3852 SM00448 cheY-homologous receiver domain BAMF_3852 SM00862 Transcriptional regulatory protein, C terminal BAMF_3854 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BAMF_3855 SM00849 Metallo-beta-lactamase superfamily BAMF_3858 SM00091 PAS domain BAMF_3858 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMF_3858 SM00387 Histidine kinase-like ATPases BAMF_3858 SM00388 His Kinase A (phosphoacceptor) domain BAMF_3859 SM00448 cheY-homologous receiver domain BAMF_3859 SM00862 Transcriptional regulatory protein, C terminal BAMF_3860 SM00788 Adenylosuccinate synthetase BAMF_3862 SM00382 ATPases associated with a variety of cellular activities BAMF_3873 SM00267 diguanylate cyclase BAMF_3878 SM01131 BAMF_3878 BAMF_3881 SM00640 Glycosyl hydrolases family 32 BAMF_3882 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMF_3882 SM00895 BAMF_3882 BAMF_3887 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMF_3889 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMF_3900 SM00354 helix_turn _helix lactose operon repressor BAMF_3903 SM00342 helix_turn_helix, arabinose operon control protein BAMF_3908 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BAMF_3913 SM00470 ParB-like nuclease domain BAMF_3915 SM00470 ParB-like nuclease domain BAMF_3917 SM01228 BAMF_3917 BAMF_3919 SM00393 Putative single-stranded nucleic acids-binding domain BAMF_3919 SM01245 BAMF_3919