locus-tag	class	description
BAMF_0002	COG0592	DNA-directed DNA polymerase activity
BAMF_0003	COG2501	S4 domain
BAMF_0006	COG0187	DNA topoisomerase II activity
BAMF_0007	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
BAMF_0009	COG0516	GMP reductase activity
BAMF_0009	COG0517	IMP dehydrogenase activity
BAMF_0010	COG1686	Belongs to the peptidase S11 family
BAMF_0014	COG1929	Belongs to the glycerate kinase type-1 family
BAMF_0015	COG1428	Deoxynucleoside kinase
BAMF_0016	COG1428	Deoxynucleoside kinase
BAMF_0017	COG1388	LysM domain
BAMF_0017	COG3858	chitin binding
BAMF_0018	COG1335	isochorismatase
BAMF_0019	COG0590	tRNA wobble adenosine to inosine editing
BAMF_0020	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
BAMF_0021	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
BAMF_0025	COG4915	5-bromo-4-chloroindolyl phosphate hydrolysis protein
BAMF_0026	COG3853	Toxic anion resistance protein (TelA)
BAMF_0027	COG1982	Orn Lys Arg decarboxylase major
BAMF_0029	COG3870	Protein conserved in bacteria
BAMF_0030	COG1728	Protein conserved in bacteria
BAMF_0031	COG0470	DNA polymerase III
BAMF_0032	COG1774	PSP1 C-terminal conserved region
BAMF_0034	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
BAMF_0036	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
BAMF_0037	COG2002	toxin-antitoxin pair type II binding
BAMF_0038	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BAMF_0038	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BAMF_0039	COG0084	hydrolase, TatD family'
BAMF_0040	COG3584	3D domain protein
BAMF_0040	COG3583	domain protein
BAMF_0041	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
BAMF_0042	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
BAMF_0044	COG4466	Protein conserved in bacteria
BAMF_0047	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
BAMF_0048	COG0251	oxidation-reduction process
BAMF_0051	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
BAMF_0055	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
BAMF_0056	COG2002	toxin-antitoxin pair type II binding
BAMF_0057	COG2244	polysaccharide biosynthetic process
BAMF_0058	COG3956	TIGRFAM MazG family protein
BAMF_0059	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
BAMF_0062	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
BAMF_0063	COG1098	S1 RNA binding domain
BAMF_0064	COG2208	phosphoserine phosphatase activity
BAMF_0065	COG2304	oxidoreductase activity
BAMF_0066	COG0515	serine threonine protein kinase
BAMF_0067	COG0037	tRNA processing
BAMF_0069	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
BAMF_0072	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BAMF_0073	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
BAMF_0074	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
BAMF_0075	COG0512	Glutamine amidotransferase of anthranilate synthase
BAMF_0076	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
BAMF_0077	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
BAMF_0078	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
BAMF_0079	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
BAMF_0080	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
BAMF_0081	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
BAMF_0082	COG4463	regulation of RNA biosynthetic process
BAMF_0083	COG3880	PFAM UvrB UvrC protein
BAMF_0085	COG0542	response to heat
BAMF_0086	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
BAMF_0087	COG1623	Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c- di-AMP acts as a signaling molecule that couples DNA integrity with progression of sporulation. The rise in c-di-AMP level generated by DisA while scanning the chromosome, operates as a positive signal that advances sporulation
BAMF_0088	COG4956	integral membrane protein (PIN domain superfamily)
BAMF_0093	COG1045	serine acetyltransferase
BAMF_0095	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
BAMF_0096	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BAMF_0097	COG3688	RNA-binding protein containing a PIN domain
BAMF_0098	COG1595	DNA-templated transcription, initiation
BAMF_0099	COG0267	Belongs to the bacterial ribosomal protein bL33 family
BAMF_0100	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
BAMF_0101	COG0250	Participates in transcription elongation, termination and antitermination
BAMF_0102	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
BAMF_0105	COG0222	ribosome binding
BAMF_0106	COG2813	Specifically methylates the guanine in position
BAMF_0109	COG1358	cellular component organization or biogenesis
BAMF_0114	COG0596	Alpha beta hydrolase
BAMF_0115	COG0051	transcription antitermination factor activity, RNA binding
BAMF_0118	COG0089	rRNA binding
BAMF_0120	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
BAMF_0121	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
BAMF_0123	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
BAMF_0124	COG0255	Belongs to the universal ribosomal protein uL29 family
BAMF_0126	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
BAMF_0134	COG1841	ribosomal large subunit assembly
BAMF_0136	COG0201	protein transport
BAMF_0138	COG0024	Methionine aminopeptidase
BAMF_0139	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
BAMF_0140	COG0257	Belongs to the bacterial ribosomal protein bL36 family
BAMF_0145	COG1122	ATPase activity
BAMF_0146	COG1122	ATPase activity
BAMF_0147	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
BAMF_0149	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
BAMF_0151	COG2226	methyltransferase
BAMF_0153	COG0860	N-Acetylmuramoyl-L-alanine amidase
BAMF_0154	COG0489	protein tyrosine kinase activity
BAMF_0156	COG2194	sulfuric ester hydrolase activity
BAMF_0157	COG0726	polysaccharide deacetylase
BAMF_0158	COG0738	Major facilitator superfamily
BAMF_0161	COG1063	alcohol dehydrogenase
BAMF_0162	COG0659	secondary active sulfate transmembrane transporter activity
BAMF_0163	COG0385	Bile acid
BAMF_0164	COG2819	hydrolase of the alpha beta superfamily
BAMF_0165	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BAMF_0166	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BAMF_0167	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
BAMF_0168	COG2207	Transcriptional regulator
BAMF_0168	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
BAMF_0169	COG3876	Protein conserved in bacteria
BAMF_0170	COG1472	Belongs to the glycosyl hydrolase 3 family
BAMF_0171	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
BAMF_0172	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BAMF_0172	COG1263	PTS System
BAMF_0174	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BAMF_0175	COG1683	Conserved Protein
BAMF_0176	COG1595	DNA-templated transcription, initiation
BAMF_0177	COG5662	AntiSigma factor
BAMF_0178	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
BAMF_0179	COG4856	YbbR-like protein
BAMF_0188	COG1346	cytolysis
BAMF_0189	COG1380	Effector of murein hydrolase LrgA
BAMF_0190	COG1846	Transcriptional regulator
BAMF_0191	COG1113	amino acid transport
BAMF_0192	COG1011	Hydrolase
BAMF_0193	COG4585	Histidine kinase
BAMF_0194	COG2197	response regulator
BAMF_0195	COG1131	(ABC) transporter
BAMF_0197	COG0842	Transport permease protein
BAMF_0197	COG1511	domain protein
BAMF_0203	COG0531	amino acid
BAMF_0204	COG0584	glycerophosphoryl diester phosphodiesterase
BAMF_0205	COG2271	Major facilitator Superfamily
BAMF_0207	COG2368	4-hydroxyphenylacetate
BAMF_0210	COG0371	Dehydrogenase
BAMF_0212	COG1183	phosphatidylcholine synthase activity
BAMF_0213	COG0586	Pfam SNARE associated Golgi protein
BAMF_0214	COG0688	phosphatidylethanolamine metabolic process
BAMF_0217	COG1301	dicarboxylic acid transport
BAMF_0218	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
BAMF_0219	COG0833	amino acid
BAMF_0220	COG2040	homocysteine
BAMF_0221	COG1115	amino acid carrier protein
BAMF_0222	COG2066	Belongs to the glutaminase family
BAMF_0223	COG2066	Belongs to the glutaminase family
BAMF_0225	COG4191	Histidine kinase
BAMF_0226	COG0784	Response regulator, receiver
BAMF_0227	COG3173	Aminoglycoside phosphotransferase
BAMF_0230	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
BAMF_0231	COG0778	Nitroreductase
BAMF_0232	COG0346	lactoylglutathione lyase activity
BAMF_0233	COG2259	Doxx family
BAMF_0234	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BAMF_0236	COG3773	Cell wall hydrolase
BAMF_0237	COG3540	Alkaline phosphatase
BAMF_0238	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
BAMF_0239	COG0805	protein transport
BAMF_0240	COG2039	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
BAMF_0241	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
BAMF_0242	COG0477	Major facilitator Superfamily
BAMF_0243	COG1309	transcriptional regulator
BAMF_0244	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
BAMF_0245	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
BAMF_0246	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
BAMF_0247	COG3012	SEC-C Motif Domain Protein
BAMF_0247	COG1405	negative regulation of cell septum assembly
BAMF_0248	COG0667	Aldo Keto reductase
BAMF_0250	COG1595	DNA-templated transcription, initiation
BAMF_0251	COG1595	DNA-templated transcription, initiation
BAMF_0252	COG1876	peptidase activity
BAMF_0253	COG0457	Tetratricopeptide repeat
BAMF_0254	COG1028	Short-chain dehydrogenase reductase Sdr
BAMF_0255	COG0366	Alpha amylase catalytic
BAMF_0257	COG1695	Transcriptional regulator
BAMF_0258	COG0803	Belongs to the bacterial solute-binding protein 9 family
BAMF_0259	COG1121	(ABC) transporter
BAMF_0260	COG1108	ABC-type Mn2 Zn2 transport systems permease components
BAMF_0261	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BAMF_0262	COG2310	stress, protein
BAMF_0263	COG2310	stress, protein
BAMF_0264	COG2310	stress, protein
BAMF_0265	COG0861	Integral membrane protein TerC family
BAMF_0267	COG3853	Toxic anion resistance protein (TelA)
BAMF_0268	COG0477	Major facilitator Superfamily
BAMF_0269	COG4175	Glycine betaine
BAMF_0269	COG0517	IMP dehydrogenase activity
BAMF_0270	COG4176	ABC-type proline glycine betaine transport system permease component
BAMF_0271	COG2113	Glycine betaine
BAMF_0272	COG1473	amidohydrolase
BAMF_0273	COG1288	antiporter activity
BAMF_0274	COG1288	antiporter activity
BAMF_0276	COG1714	RDD family
BAMF_0278	COG2814	Major facilitator Superfamily
BAMF_0279	COG1846	Transcriptional regulator
BAMF_0281	COG1280	lysine exporter protein (LysE YggA)
BAMF_0282	COG1280	lysine exporter protein (LysE YggA)
BAMF_0283	COG3403	YqcI/YcgG family
BAMF_0284	COG1113	amino acid transport
BAMF_0285	COG3665	Urea carboxylase-associated protein
BAMF_0287	COG1082	Xylose isomerase domain protein TIM barrel
BAMF_0288	COG2271	Major facilitator Superfamily
BAMF_0289	COG2271	Major facilitator Superfamily
BAMF_0290	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
BAMF_0291	COG3458	cephalosporin-C deacetylase activity
BAMF_0292	COG3541	Predicted nucleotidyltransferase
BAMF_0293	COG0506	proline dehydrogenase activity
BAMF_0294	COG1012	belongs to the aldehyde dehydrogenase family
BAMF_0295	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BAMF_0296	COG2508	Transcriptional regulator
BAMF_0298	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
BAMF_0298	COG1587	Uroporphyrinogen-III synthase
BAMF_0299	COG2146	nitrite reductase [NAD(P)H] activity
BAMF_0300	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BAMF_0301	COG2223	nitrite transmembrane transporter activity
BAMF_0302	COG0523	cobalamin synthesis protein
BAMF_0303	COG1063	alcohol dehydrogenase
BAMF_0304	COG1714	RDD family
BAMF_0306	COG2723	6-phospho-beta-galactosidase activity
BAMF_0308	COG3209	COG3209 Rhs family protein
BAMF_0309	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
BAMF_0310	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
BAMF_0311	COG1733	regulation of RNA biosynthetic process
BAMF_0312	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BAMF_0313	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BAMF_0314	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BAMF_0315	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
BAMF_0318	COG2364	Membrane
BAMF_0319	COG1126	abc transporter atp-binding protein
BAMF_0320	COG0765	amino acid transport
BAMF_0321	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BAMF_0322	COG0583	DNA-binding transcription factor activity
BAMF_0323	COG0163	prenyltransferase activity
BAMF_0324	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
BAMF_0327	COG3104	oligopeptide transport
BAMF_0328	COG5434	Belongs to the glycosyl hydrolase 28 family
BAMF_0330	COG0697	spore germination
BAMF_0332	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
BAMF_0335	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BAMF_0336	COG0765	amino acid transport
BAMF_0337	COG1126	abc transporter atp-binding protein
BAMF_0339	COG2079	MmgE PrpD family protein
BAMF_0340	COG1136	(ABC) transporter
BAMF_0341	COG0577	efflux transmembrane transporter activity
BAMF_0342	COG0745	RESPONSE REGULATOR receiver
BAMF_0343	COG5002	protein histidine kinase activity
BAMF_0343	COG3850	Histidine kinase
BAMF_0344	COG0457	Tetratricopeptide repeat
BAMF_0347	COG0527	aspartate kinase activity
BAMF_0348	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BAMF_0349	COG4605	iron ion homeostasis
BAMF_0350	COG4604	ABC transporter, ATP-binding protein
BAMF_0351	COG4607	ABC-type enterochelin transport system periplasmic component
BAMF_0352	COG2814	Major facilitator Superfamily
BAMF_0353	COG1309	transcriptional regulator
BAMF_0354	COG0778	Nitroreductase
BAMF_0355	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
BAMF_0356	COG0640	Transcriptional regulator
BAMF_0357	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BAMF_0358	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
BAMF_0359	COG1012	belongs to the aldehyde dehydrogenase family
BAMF_0360	COG4975	Glucose uptake
BAMF_0361	COG1028	Short-chain dehydrogenase reductase Sdr
BAMF_0362	COG4549	nuclear export factor GLE1
BAMF_0363	COG1276	copper resistance
BAMF_0363	COG2372	response to copper ion
BAMF_0364	COG1349	DNA-binding transcription factor activity
BAMF_0366	COG2213	PTS system mannitol-specific
BAMF_0367	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
BAMF_0369	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
BAMF_0371	COG0561	phosphatase activity
BAMF_0373	COG1914	H( )-stimulated, divalent metal cation uptake system
BAMF_0375	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
BAMF_0376	COG1984	allophanate hydrolase subunit 2
BAMF_0377	COG1414	Transcriptional regulator
BAMF_0378	COG2755	lipolytic protein G-D-S-L family
BAMF_0380	COG2329	Antibiotic biosynthesis monooxygenase
BAMF_0381	COG0768	penicillin binding
BAMF_0382	COG4989	oxidoreductase activity
BAMF_0383	COG3711	transcriptional antiterminator
BAMF_0384	COG0318	PFAM AMP-dependent synthetase and ligase
BAMF_0385	COG1028	Short-chain dehydrogenase reductase Sdr
BAMF_0386	COG1917	Cupin 2, conserved barrel domain protein
BAMF_0387	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BAMF_0388	COG3871	stress protein (general stress protein 26)
BAMF_0390	COG2814	Major facilitator Superfamily
BAMF_0391	COG1522	sequence-specific DNA binding
BAMF_0392	COG0551	DNA topoisomerase type I activity
BAMF_0392	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
BAMF_0394	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
BAMF_0395	COG3706	GGDEF domain
BAMF_0396	COG5298	Protein conserved in bacteria
BAMF_0397	COG1215	transferase activity, transferring glycosyl groups
BAMF_0399	COG0531	amino acid
BAMF_0400	COG0028	Belongs to the TPP enzyme family
BAMF_0402	COG1388	LysM domain
BAMF_0407	COG0457	Tetratricopeptide repeat
BAMF_0410	COG1914	H( )-stimulated, divalent metal cation uptake system
BAMF_0412	COG4876	unkown
BAMF_0414	COG2076	Multidrug Resistance protein
BAMF_0415	COG2217	Heavy metal translocating P-type atpase
BAMF_0416	COG3729	General stress protein
BAMF_0417	COG0662	Cupin 2, conserved barrel domain protein
BAMF_0418	COG2329	Antibiotic biosynthesis monooxygenase
BAMF_0419	COG3546	catalase activity
BAMF_0420	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
BAMF_0421	COG3290	protein histidine kinase activity
BAMF_0422	COG4565	transcriptional regulatory protein
BAMF_0423	COG1301	dicarboxylic acid transport
BAMF_0424	COG0628	permease
BAMF_0425	COG1131	(ABC) transporter
BAMF_0426	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
BAMF_0428	COG1960	acyl-CoA dehydrogenase activity
BAMF_0431	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
BAMF_0432	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BAMF_0434	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
BAMF_0435	COG0513	Belongs to the DEAD box helicase family
BAMF_0436	COG3402	PFAM membrane-flanked domain
BAMF_0437	COG3428	Bacterial PH domain
BAMF_0438	COG0705	Rhomboid family
BAMF_0440	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
BAMF_0441	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
BAMF_0442	COG0864	Transcriptional regulator
BAMF_0443	COG2337	Toxic component of a toxin-antitoxin (TA) module
BAMF_0444	COG1366	Belongs to the anti-sigma-factor antagonist family
BAMF_0445	COG1366	Belongs to the anti-sigma-factor antagonist family
BAMF_0446	COG2172	sigma factor antagonist activity
BAMF_0447	COG2208	phosphoserine phosphatase activity
BAMF_0448	COG1366	Belongs to the anti-sigma-factor antagonist family
BAMF_0450	COG1191	sigma factor activity
BAMF_0451	COG2208	phosphoserine phosphatase activity
BAMF_0452	COG2183	response to ionizing radiation
BAMF_0456	COG1959	2 iron, 2 sulfur cluster binding
BAMF_0458	COG1278	Cold shock
BAMF_0460	COG1794	racemase activity, acting on amino acids and derivatives
BAMF_0463	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BAMF_0464	COG0477	Major facilitator Superfamily
BAMF_0465	COG3621	Patatin-like phospholipase
BAMF_0466	COG3621	Patatin-like phospholipase
BAMF_0468	COG0277	FAD linked oxidase domain protein
BAMF_0472	COG0662	Cupin 2, conserved barrel domain protein
BAMF_0473	COG0456	acetyltransferase
BAMF_0474	COG3708	Transcriptional regulator
BAMF_0474	COG2207	Transcriptional regulator
BAMF_0479	COG1064	alcohol dehydrogenase
BAMF_0480	COG0789	Transcriptional regulator
BAMF_0482	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BAMF_0483	COG2808	Putative FMN-binding domain
BAMF_0484	COG2814	Major facilitator Superfamily
BAMF_0485	COG1309	transcriptional regulator
BAMF_0486	COG0697	spore germination
BAMF_0487	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BAMF_0488	COG5577	PFAM Coat F domain
BAMF_0490	COG1063	alcohol dehydrogenase
BAMF_0491	COG5577	PFAM Coat F domain
BAMF_0493	COG2409	Drug exporters of the RND superfamily
BAMF_0494	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
BAMF_0496	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BAMF_0497	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BAMF_0499	COG2814	Major facilitator Superfamily
BAMF_0500	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BAMF_0502	COG0730	response to heat
BAMF_0503	COG0456	acetyltransferase
BAMF_0504	COG0789	Transcriptional regulator
BAMF_0504	COG4978	Transcriptional regulator
BAMF_0505	COG0697	spore germination
BAMF_0506	COG1051	belongs to the nudix hydrolase family
BAMF_0507	COG0596	Alpha beta hydrolase
BAMF_0508	COG0473	3-isopropylmalate dehydrogenase activity
BAMF_0509	COG1802	Transcriptional regulator
BAMF_0510	COG1819	glycosyl
BAMF_0511	COG1819	glycosyl
BAMF_0513	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
BAMF_0514	COG1388	LysM domain
BAMF_0515	COG2814	Major facilitator Superfamily
BAMF_0516	COG2188	Transcriptional regulator
BAMF_0517	COG2186	Transcriptional regulator
BAMF_0518	COG2807	transmembrane transport
BAMF_0519	COG2076	Multidrug Resistance protein
BAMF_0520	COG2076	Multidrug Resistance protein
BAMF_0521	COG1309	transcriptional regulator
BAMF_0522	COG0531	amino acid
BAMF_0524	COG3832	glyoxalase III activity
BAMF_0525	COG0604	alcohol dehydrogenase
BAMF_0526	COG2814	Major facilitator Superfamily
BAMF_0527	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
BAMF_0528	COG0802	atpase or kinase
BAMF_0529	COG1214	PFAM Peptidase M22, glycoprotease
BAMF_0530	COG0456	acetyltransferase
BAMF_0531	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
BAMF_0532	COG0488	(ABC) transporter
BAMF_0535	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
BAMF_0536	COG0805	protein transport
BAMF_0538	COG1266	CAAX protease self-immunity
BAMF_0539	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
BAMF_0544	COG1396	sequence-specific DNA binding
BAMF_0550	COG5377	YqaJ viral recombinase family
BAMF_0551	COG5377	YqaJ viral recombinase family
BAMF_0552	COG3723	Recombinational DNA repair protein, rece pathway
BAMF_0553	COG3935	DnaD domain protein
BAMF_0554	COG1484	DNA-dependent DNA replication
BAMF_0573	COG1595	DNA-templated transcription, initiation
BAMF_0577	COG5484	DNA packaging
BAMF_0578	COG1783	phage Terminase large subunit
BAMF_0601	COG1388	LysM domain
BAMF_0601	COG3409	Peptidoglycan-binding domain 1 protein
BAMF_0601	COG5632	N-Acetylmuramoyl-L-alanine amidase
BAMF_0603	COG3409	Peptidoglycan-binding domain 1 protein
BAMF_0605	COG0457	Tetratricopeptide repeat
BAMF_0606	COG1063	alcohol dehydrogenase
BAMF_0607	COG2211	Major facilitator Superfamily
BAMF_0608	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BAMF_0610	COG1842	Phage shock protein A
BAMF_0611	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
BAMF_0612	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
BAMF_0613	COG4260	virion core protein, lumpy skin disease virus
BAMF_0614	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
BAMF_0614	COG2755	lipolytic protein G-D-S-L family
BAMF_0616	COG1595	DNA-templated transcription, initiation
BAMF_0617	COG1063	alcohol dehydrogenase
BAMF_0618	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
BAMF_0619	COG0823	Involved in the tonB-independent uptake of proteins
BAMF_0622	COG2132	Multicopper oxidase
BAMF_0623	COG1113	amino acid transport
BAMF_0624	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
BAMF_0625	COG0714	Associated with various cellular activities
BAMF_0626	COG1721	protein (some members contain a von Willebrand factor type A (vWA) domain
BAMF_0627	COG1305	Transglutaminase-like
BAMF_0631	COG2252	PERMEase
BAMF_0632	COG3064	Membrane
BAMF_0636	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
BAMF_0637	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
BAMF_0638	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
BAMF_0639	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
BAMF_0640	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
BAMF_0643	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
BAMF_0645	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
BAMF_0646	COG0138	bifunctional purine biosynthesis protein purh
BAMF_0647	COG0151	Belongs to the GarS family
BAMF_0648	COG1522	sequence-specific DNA binding
BAMF_0649	COG0531	amino acid
BAMF_0651	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
BAMF_0652	COG1470	cell adhesion involved in biofilm formation
BAMF_0653	COG4496	protein, YerC YecD
BAMF_0654	COG0069	glutamate synthase activity
BAMF_0656	COG0210	DNA helicase
BAMF_0658	COG4851	CamS sex pheromone cAM373 precursor
BAMF_0659	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
BAMF_0660	COG1285	pathogenesis
BAMF_0661	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BAMF_0665	COG1309	transcriptional regulator
BAMF_0666	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BAMF_0667	COG1597	lipid kinase activity
BAMF_0668	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
BAMF_0670	COG1131	(ABC) transporter
BAMF_0675	COG5444	nuclease activity
BAMF_0676	COG5444	nuclease activity
BAMF_0682	COG3546	catalase activity
BAMF_0683	COG0454	-acetyltransferase
BAMF_0685	COG2323	membrane
BAMF_0686	COG2329	Antibiotic biosynthesis monooxygenase
BAMF_0687	COG0346	lactoylglutathione lyase activity
BAMF_0688	COG1366	Belongs to the anti-sigma-factor antagonist family
BAMF_0689	COG5583	Uncharacterized small protein (DUF2292)
BAMF_0690	COG0196	riboflavin kinase activity
BAMF_0691	COG0670	Belongs to the BI1 family
BAMF_0692	COG1846	Transcriptional regulator
BAMF_0693	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BAMF_0695	COG2124	cytochrome p450
BAMF_0695	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
BAMF_0696	COG1368	sulfuric ester hydrolase activity
BAMF_0697	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
BAMF_0698	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BAMF_0699	COG1442	glycosyl transferase family 8
BAMF_0700	COG1216	Glycosyl transferase, family 2
BAMF_0701	COG1442	glycosyl transferase family 8
BAMF_0702	COG2223	nitrite transmembrane transporter activity
BAMF_0703	COG0531	amino acid
BAMF_0704	COG1012	belongs to the aldehyde dehydrogenase family
BAMF_0705	COG0840	transmembrane signaling receptor activity
BAMF_0706	COG1028	Short-chain dehydrogenase reductase Sdr
BAMF_0707	COG0463	Glycosyl transferase, family 2
BAMF_0707	COG0457	Tetratricopeptide repeat
BAMF_0708	COG0488	(ABC) transporter
BAMF_0709	COG0789	Transcriptional regulator
BAMF_0710	COG2814	Major facilitator Superfamily
BAMF_0711	COG0488	(ABC) transporter
BAMF_0712	COG0513	Belongs to the DEAD box helicase family
BAMF_0713	COG2130	NADP-dependent
BAMF_0714	COG2130	NADP-dependent
BAMF_0717	COG3866	Pectate lyase
BAMF_0718	COG0471	metal ion transport
BAMF_0722	COG0745	RESPONSE REGULATOR receiver
BAMF_0722	COG2972	Histidine kinase
BAMF_0725	COG3764	Sortase (surface protein transpeptidase)
BAMF_0726	COG3290	protein histidine kinase activity
BAMF_0727	COG4565	transcriptional regulatory protein
BAMF_0728	COG3181	Tripartite tricarboxylate transporter family receptor
BAMF_0729	COG2851	Citrate transporter
BAMF_0730	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BAMF_0731	COG4362	Belongs to the NOS family. Bacterial NOS oxygenase subfamily
BAMF_0733	COG2258	MOSC domain
BAMF_0737	COG0024	Methionine aminopeptidase
BAMF_0738	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BAMF_0738	COG1263	PTS System
BAMF_0740	COG1368	sulfuric ester hydrolase activity
BAMF_0742	COG0071	Belongs to the small heat shock protein (HSP20) family
BAMF_0745	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BAMF_0745	COG1263	PTS System
BAMF_0746	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BAMF_0746	COG1263	PTS System
BAMF_0747	COG0366	Alpha amylase catalytic
BAMF_0748	COG2188	Transcriptional regulator
BAMF_0749	COG0778	Nitroreductase
BAMF_0752	COG0737	Belongs to the 5'-nucleotidase family
BAMF_0753	COG0693	protein deglycase activity
BAMF_0755	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
BAMF_0757	COG2814	Major facilitator Superfamily
BAMF_0759	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
BAMF_0760	COG4980	gas vesicle protein
BAMF_0761	COG1295	ribonuclease BN
BAMF_0762	COG0477	Major facilitator Superfamily
BAMF_0763	COG0387	Pfam Sodium calcium exchanger
BAMF_0765	COG0668	transmembrane transport
BAMF_0766	COG0535	radical SAM domain protein
BAMF_0767	COG0535	radical SAM domain protein
BAMF_0769	COG0726	polysaccharide deacetylase
BAMF_0770	COG2084	Dehydrogenase
BAMF_0771	COG2084	Dehydrogenase
BAMF_0773	COG0598	Magnesium transport protein CorA
BAMF_0774	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
BAMF_0775	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
BAMF_0777	COG1132	(ABC) transporter
BAMF_0778	COG0515	serine threonine protein kinase
BAMF_0779	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
BAMF_0780	COG4637	Psort location Cytoplasmic, score
BAMF_0781	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
BAMF_0782	COG0022	dehydrogenase e1 component
BAMF_0783	COG0508	dehydrogenase complex catalyzes the overall conversion of
BAMF_0784	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BAMF_0785	COG3284	Transcriptional regulator
BAMF_0787	COG1486	melibiose metabolic process
BAMF_0788	COG1737	Transcriptional regulator
BAMF_0789	COG1263	PTS System
BAMF_0789	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BAMF_0790	COG5434	Belongs to the glycosyl hydrolase 28 family
BAMF_0791	COG1132	(ABC) transporter
BAMF_0792	COG1132	(ABC) transporter
BAMF_0793	COG2259	Doxx family
BAMF_0794	COG2514	catechol 2,3-dioxygenase activity
BAMF_0797	COG1695	Transcriptional regulator
BAMF_0798	COG2249	NAD(P)H dehydrogenase (quinone) activity
BAMF_0799	COG3936	Protein involved in polysaccharide intercellular adhesin (PIA) synthesis biofilm formation
BAMF_0800	COG2732	(Barnase) inhibitor
BAMF_0801	COG2318	DinB family
BAMF_0802	COG2814	Major facilitator Superfamily
BAMF_0803	COG1846	Transcriptional regulator
BAMF_0804	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
BAMF_0804	COG0392	lysyltransferase activity
BAMF_0805	COG0384	phenazine biosynthesis protein PhzF
BAMF_0806	COG0778	Nitroreductase
BAMF_0809	COG1090	epimerase
BAMF_0812	COG2814	Major facilitator Superfamily
BAMF_0814	COG3591	Belongs to the peptidase S1B family
BAMF_0817	COG3103	Sh3 type 3 domain protein
BAMF_0819	COG0596	Alpha beta hydrolase
BAMF_0820	COG0596	Alpha beta hydrolase
BAMF_0821	COG0596	Alpha beta hydrolase
BAMF_0822	COG0463	Glycosyl transferase, family 2
BAMF_0823	COG4485	Bacterial membrane protein, YfhO
BAMF_0824	COG1988	membrane-bound metal-dependent
BAMF_0825	COG0582	viral genome integration into host DNA
BAMF_0831	COG3645	SOS response
BAMF_0831	COG3646	Phage regulatory protein
BAMF_0836	COG0305	Participates in initiation and elongation during chromosome replication
BAMF_0840	COG1595	DNA-templated transcription, initiation
BAMF_0848	COG0740	serine-type endopeptidase activity
BAMF_0869	COG0457	Tetratricopeptide repeat
BAMF_0870	COG0457	Tetratricopeptide repeat
BAMF_0871	COG1194	a g-specific adenine glycosylase
BAMF_0873	COG1028	Short-chain dehydrogenase reductase Sdr
BAMF_0877	COG1132	(ABC) transporter
BAMF_0878	COG4129	membrane
BAMF_0880	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
BAMF_0881	COG0735	belongs to the Fur family
BAMF_0884	COG4974	Belongs to the 'phage' integrase family
BAMF_0891	COG1484	DNA-dependent DNA replication
BAMF_0896	COG3655	Transcriptional regulator
BAMF_0904	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BAMF_0904	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BAMF_0911	COG1780	Probably involved in ribonucleotide reductase function
BAMF_0912	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BAMF_0914	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BAMF_0915	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BAMF_0916	COG0756	dUTP diphosphatase activity
BAMF_0917	COG1351	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NAD(P)H and FADH(2) as the reductant
BAMF_0923	COG1595	DNA-templated transcription, initiation
BAMF_0926	COG1793	dna ligase
BAMF_0937	COG0582	viral genome integration into host DNA
BAMF_0954	COG1705	Flagellar rod assembly protein muramidase FlgJ
BAMF_0956	COG5434	Belongs to the glycosyl hydrolase 28 family
BAMF_0961	COG1388	LysM domain
BAMF_0961	COG3409	Peptidoglycan-binding domain 1 protein
BAMF_0961	COG5632	N-Acetylmuramoyl-L-alanine amidase
BAMF_0967	COG1757	Na H antiporter
BAMF_0968	COG3340	Belongs to the peptidase S51 family
BAMF_0970	COG0277	FAD linked oxidase domain protein
BAMF_0972	COG0747	negative chemotaxis
BAMF_0973	COG0601	transmembrane transport
BAMF_0974	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BAMF_0975	COG0444	Belongs to the ABC transporter superfamily
BAMF_0977	COG0753	catalase activity
BAMF_0979	COG1116	anion transmembrane transporter activity
BAMF_0980	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
BAMF_0981	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BAMF_0986	COG1476	TRANSCRIPTIONal
BAMF_0987	COG3382	B3 4 domain protein
BAMF_0988	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
BAMF_0990	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
BAMF_0991	COG0789	Transcriptional regulator
BAMF_0992	COG1664	Polymer-forming cytoskeletal
BAMF_0993	COG1664	Polymer-forming cytoskeletal
BAMF_0994	COG2766	serine protein kinase
BAMF_0996	COG1846	Transcriptional regulator
BAMF_0997	COG1566	PFAM secretion protein HlyD family protein
BAMF_0998	COG2814	Major facilitator Superfamily
BAMF_0999	COG0655	NAD(P)H dehydrogenase (quinone) activity
BAMF_1002	COG1725	Transcriptional regulator
BAMF_1003	COG1131	(ABC) transporter
BAMF_1004	COG1131	(ABC) transporter
BAMF_1005	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
BAMF_1006	COG1278	Cold shock
BAMF_1007	COG1464	Belongs to the NlpA lipoprotein family
BAMF_1008	COG3706	GGDEF domain
BAMF_1009	COG1823	symporter activity
BAMF_1010	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BAMF_1014	COG5577	PFAM Coat F domain
BAMF_1015	COG0737	Belongs to the 5'-nucleotidase family
BAMF_1015	COG1525	nuclease
BAMF_1015	COG4085	toxin activity
BAMF_1016	COG3764	Sortase (surface protein transpeptidase)
BAMF_1017	COG0564	pseudouridine synthase activity
BAMF_1019	COG0517	IMP dehydrogenase activity
BAMF_1020	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BAMF_1021	COG3153	acetyltransferase
BAMF_1021	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BAMF_1022	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
BAMF_1023	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
BAMF_1024	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
BAMF_1026	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
BAMF_1027	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BAMF_1028	COG4585	Histidine kinase
BAMF_1028	COG2203	Gaf domain
BAMF_1029	COG2197	response regulator
BAMF_1030	COG0431	NADPH-dependent FMN reductase
BAMF_1033	COG0791	NLP P60 protein
BAMF_1033	COG1388	LysM domain
BAMF_1034	COG1959	2 iron, 2 sulfur cluster binding
BAMF_1035	COG0668	transmembrane transport
BAMF_1036	COG2719	SpoVR family
BAMF_1037	COG1785	Belongs to the alkaline phosphatase family
BAMF_1038	COG0791	NLP P60 protein
BAMF_1038	COG1388	LysM domain
BAMF_1039	COG0583	DNA-binding transcription factor activity
BAMF_1040	COG0372	Belongs to the citrate synthase family
BAMF_1041	COG1028	Short-chain dehydrogenase reductase Sdr
BAMF_1042	COG0531	amino acid
BAMF_1043	COG0733	neurotransmitter:sodium symporter activity
BAMF_1046	COG1595	DNA-templated transcription, initiation
BAMF_1047	COG0204	Acyl-transferase
BAMF_1048	COG1253	flavin adenine dinucleotide binding
BAMF_1049	COG0789	Transcriptional regulator
BAMF_1050	COG0436	Aminotransferase
BAMF_1051	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BAMF_1052	COG1253	flavin adenine dinucleotide binding
BAMF_1053	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
BAMF_1054	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
BAMF_1055	COG0584	glycerophosphoryl diester phosphodiesterase
BAMF_1057	COG0668	transmembrane transport
BAMF_1058	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
BAMF_1059	COG0726	polysaccharide deacetylase
BAMF_1060	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
BAMF_1061	COG3226	Transcriptional regulator
BAMF_1063	COG0589	response to stress
BAMF_1064	COG1132	(ABC) transporter
BAMF_1065	COG1132	(ABC) transporter
BAMF_1066	COG0702	epimerase
BAMF_1069	COG0189	ligase activity
BAMF_1070	COG0189	ligase activity
BAMF_1073	COG0561	phosphatase activity
BAMF_1074	COG0635	Involved in the biosynthesis of porphyrin-containing compound
BAMF_1076	COG0475	glutathione-regulated potassium exporter activity
BAMF_1077	COG0490	domain, Protein
BAMF_1079	COG1024	Enoyl-CoA hydratase
BAMF_1081	COG4152	abc transporter atp-binding protein
BAMF_1082	COG1668	transmembrane transport
BAMF_1083	COG0420	3'-5' exonuclease activity
BAMF_1084	COG4717	serine-type aminopeptidase activity
BAMF_1087	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BAMF_1093	COG4980	gas vesicle protein
BAMF_1096	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
BAMF_1097	COG0537	adenosine 5'-monophosphoramidase activity
BAMF_1098	COG1131	(ABC) transporter
BAMF_1099	COG4473	ABC transporter
BAMF_1101	COG1473	amidohydrolase
BAMF_1102	COG3069	C4-dicarboxylate transmembrane transporter activity
BAMF_1103	COG2329	Antibiotic biosynthesis monooxygenase
BAMF_1104	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BAMF_1108	COG1309	transcriptional regulator
BAMF_1109	COG1511	domain protein
BAMF_1110	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BAMF_1111	COG1363	Peptidase, m42
BAMF_1112	COG1301	dicarboxylic acid transport
BAMF_1113	COG1234	tRNA 3'-trailer cleavage
BAMF_1114	COG0095	Lipoate-protein ligase
BAMF_1115	COG0702	epimerase
BAMF_1116	COG0318	PFAM AMP-dependent synthetase and ligase
BAMF_1118	COG0501	Belongs to the peptidase M48B family
BAMF_1119	COG1404	Belongs to the peptidase S8 family
BAMF_1120	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
BAMF_1121	COG0406	alpha-ribazole phosphatase activity
BAMF_1122	COG0183	Belongs to the thiolase family
BAMF_1123	COG0318	PFAM AMP-dependent synthetase and ligase
BAMF_1124	COG1268	BioY protein
BAMF_1125	COG0840	transmembrane signaling receptor activity
BAMF_1126	COG0840	transmembrane signaling receptor activity
BAMF_1127	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BAMF_1127	COG0723	plastoquinol--plastocyanin reductase activity
BAMF_1128	COG1028	Short-chain dehydrogenase reductase Sdr
BAMF_1130	COG4903	ComK protein
BAMF_1131	COG5646	InterPro IPR014922
BAMF_1136	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BAMF_1139	COG0398	Pfam SNARE associated Golgi protein
BAMF_1140	COG0681	Belongs to the peptidase S26 family
BAMF_1141	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BAMF_1142	COG1846	Transcriptional regulator
BAMF_1143	COG3180	Ammonia monooxygenase
BAMF_1144	COG2814	Major facilitator Superfamily
BAMF_1146	COG1633	Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME)
BAMF_1147	COG2323	membrane
BAMF_1150	COG0420	3'-5' exonuclease activity
BAMF_1151	COG0419	ATPase involved in DNA repair
BAMF_1152	COG1403	HNH endonuclease
BAMF_1160	COG0179	Fumarylacetoacetate (FAA) hydrolase
BAMF_1162	COG1404	Belongs to the peptidase S8 family
BAMF_1164	COG0367	asparagine synthase
BAMF_1165	COG1562	ergosterol biosynthetic process
BAMF_1166	COG0534	Mate efflux family protein
BAMF_1167	COG1917	Cupin 2, conserved barrel domain protein
BAMF_1167	COG2207	Transcriptional regulator
BAMF_1168	COG1609	Transcriptional regulator
BAMF_1169	COG0673	inositol 2-dehydrogenase activity
BAMF_1170	COG2318	DinB family
BAMF_1171	COG1279	arginine transmembrane transporter activity
BAMF_1172	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BAMF_1173	COG1357	PFAM Pentapeptide repeats (8 copies)
BAMF_1174	COG2153	protein acetylation
BAMF_1175	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
BAMF_1175	COG0646	methionine synthase
BAMF_1177	COG2996	Protein conserved in bacteria
BAMF_1179	COG0840	transmembrane signaling receptor activity
BAMF_1180	COG2124	cytochrome p450
BAMF_1181	COG1307	EDD domain protein, DegV family
BAMF_1182	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BAMF_1186	COG0561	phosphatase activity
BAMF_1187	COG1073	alpha beta
BAMF_1188	COG2151	metal-sulfur cluster biosynthetic enzyme
BAMF_1190	COG0277	FAD linked oxidase domain protein
BAMF_1191	COG2271	Major facilitator Superfamily
BAMF_1195	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
BAMF_1196	COG0505	Belongs to the CarA family
BAMF_1197	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
BAMF_1198	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
BAMF_1201	COG2267	carboxylic ester hydrolase activity
BAMF_1203	COG1744	ABC transporter substrate-binding protein PnrA-like
BAMF_1206	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BAMF_1207	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BAMF_1208	COG5504	Zn-dependent protease
BAMF_1209	COG0444	Belongs to the ABC transporter superfamily
BAMF_1210	COG4608	Belongs to the ABC transporter superfamily
BAMF_1212	COG0601	transmembrane transport
BAMF_1213	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BAMF_1215	COG0180	Tryptophanyl-tRNA synthetase
BAMF_1216	COG4166	transmembrane transport
BAMF_1217	COG0601	transmembrane transport
BAMF_1218	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BAMF_1219	COG0444	Belongs to the ABC transporter superfamily
BAMF_1220	COG4608	Belongs to the ABC transporter superfamily
BAMF_1222	COG0456	acetyltransferase
BAMF_1223	COG1393	Belongs to the ArsC family
BAMF_1224	COG0861	Integral membrane protein TerC family
BAMF_1225	COG4862	establishment of competence for transformation
BAMF_1226	COG4469	Competence protein
BAMF_1227	COG1164	Oligoendopeptidase f
BAMF_1230	COG2346	COG2346, Truncated hemoglobins
BAMF_1231	COG0741	lytic transglycosylase activity
BAMF_1232	COG4116	CYTH
BAMF_1234	COG2357	RelA SpoT domain protein
BAMF_1235	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
BAMF_1236	COG0564	pseudouridine synthase activity
BAMF_1238	COG0569	domain protein
BAMF_1238	COG0475	glutathione-regulated potassium exporter activity
BAMF_1239	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
BAMF_1240	COG0352	thiamine-phosphate diphosphorylase activity
BAMF_1241	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BAMF_1242	COG2104	thiamine diphosphate biosynthetic process
BAMF_1244	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
BAMF_1245	COG0351	phosphomethylpyrimidine kinase
BAMF_1246	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
BAMF_1257	COG0210	DNA helicase
BAMF_1259	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BAMF_1261	COG1131	(ABC) transporter
BAMF_1263	COG2153	protein acetylation
BAMF_1265	COG2382	esterase
BAMF_1266	COG0626	cystathionine gamma-synthase activity
BAMF_1267	COG0626	cystathionine gamma-synthase activity
BAMF_1270	COG4282	regulation of fungal-type cell wall biogenesis
BAMF_1275	COG5290	Psort location Cytoplasmic, score
BAMF_1276	COG5290	Psort location Cytoplasmic, score
BAMF_1277	COG5290	Psort location Cytoplasmic, score
BAMF_1280	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
BAMF_1288	COG2367	Beta-lactamase
BAMF_1289	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
BAMF_1290	COG0477	Major facilitator Superfamily
BAMF_1291	COG1846	Transcriptional regulator
BAMF_1294	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BAMF_1294	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BAMF_1295	COG1447	Phosphotransferase system cellobiose-specific component IIA
BAMF_1296	COG2723	6-phospho-beta-galactosidase activity
BAMF_1297	COG1349	DNA-binding transcription factor activity
BAMF_1301	COG1285	pathogenesis
BAMF_1303	COG2205	protein histidine kinase activity
BAMF_1305	COG3383	formate dehydrogenase (NAD+) activity
BAMF_1306	COG0390	transport system, permease component
BAMF_1307	COG1587	Uroporphyrinogen-III synthase
BAMF_1309	COG1819	glycosyl
BAMF_1310	COG2124	cytochrome p450
BAMF_1311	COG2427	Protein of unknown function (DUF1641)
BAMF_1312	COG3383	formate dehydrogenase (NAD+) activity
BAMF_1313	COG3383	formate dehydrogenase (NAD+) activity
BAMF_1314	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
BAMF_1315	COG0697	spore germination
BAMF_1316	COG4297	protein containing double-stranded beta helix domain
BAMF_1318	COG1252	NADH dehydrogenase
BAMF_1320	COG1609	Transcriptional regulator
BAMF_1322	COG2721	sulfolactate sulfo-lyase activity
BAMF_1323	COG0745	RESPONSE REGULATOR receiver
BAMF_1324	COG5002	protein histidine kinase activity
BAMF_1325	COG0730	response to heat
BAMF_1326	COG2318	DinB family
BAMF_1327	COG0457	Tetratricopeptide repeat
BAMF_1329	COG5632	N-Acetylmuramoyl-L-alanine amidase
BAMF_1329	COG3409	Peptidoglycan-binding domain 1 protein
BAMF_1329	COG1388	LysM domain
BAMF_1331	COG4195	phage-related replication protein
BAMF_1332	COG2856	Zn peptidase
BAMF_1333	COG1396	sequence-specific DNA binding
BAMF_1335	COG1522	sequence-specific DNA binding
BAMF_1336	COG1484	DNA-dependent DNA replication
BAMF_1340	COG1595	DNA-templated transcription, initiation
BAMF_1341	COG5484	DNA packaging
BAMF_1341	COG3728	DNA packaging
BAMF_1342	COG1783	phage Terminase large subunit
BAMF_1343	COG5518	Phage portal protein
BAMF_1344	COG0338	D12 class N6 adenine-specific DNA methyltransferase
BAMF_1345	COG4653	Phage capsid family
BAMF_1354	COG3953	SLT domain
BAMF_1354	COG5412	phage tail tape measure protein
BAMF_1355	COG5412	phage tail tape measure protein
BAMF_1355	COG5412	phage tail tape measure protein
BAMF_1355	COG3953	SLT domain
BAMF_1355	COG3953	SLT domain
BAMF_1356	COG1652	LysM domain
BAMF_1357	COG4193	domain, Protein
BAMF_1359	COG3628	GPW Gp25 family protein
BAMF_1360	COG3299	homolog of phage Mu protein gp47
BAMF_1361	COG3778	Protein conserved in bacteria
BAMF_1369	COG5632	N-Acetylmuramoyl-L-alanine amidase
BAMF_1369	COG3409	Peptidoglycan-binding domain 1 protein
BAMF_1372	COG0306	phosphate transporter
BAMF_1373	COG1392	Phosphate transport regulator
BAMF_1374	COG0531	amino acid
BAMF_1375	COG0346	lactoylglutathione lyase activity
BAMF_1376	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
BAMF_1377	COG0463	Glycosyl transferase, family 2
BAMF_1378	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BAMF_1379	COG0477	Major facilitator Superfamily
BAMF_1380	COG2362	D-Aminopeptidase
BAMF_1381	COG0601	transmembrane transport
BAMF_1382	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BAMF_1383	COG0444	Belongs to the ABC transporter superfamily
BAMF_1384	COG4166	transmembrane transport
BAMF_1385	COG1619	proteins homologs of microcin C7 resistance protein MccF
BAMF_1386	COG4948	Mandelate Racemase Muconate Lactonizing
BAMF_1387	COG0791	NLP P60 protein
BAMF_1388	COG4608	Belongs to the ABC transporter superfamily
BAMF_1389	COG2706	6-phosphogluconolactonase activity
BAMF_1390	COG1834	amidinotransferase
BAMF_1391	COG1607	acyl-coa hydrolase
BAMF_1392	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BAMF_1393	COG2076	Multidrug Resistance protein
BAMF_1394	COG2076	Multidrug Resistance protein
BAMF_1395	COG0788	formyltetrahydrofolate deformylase activity
BAMF_1396	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
BAMF_1398	COG1764	response to oxidative stress
BAMF_1399	COG1846	Transcriptional regulator
BAMF_1400	COG1764	response to oxidative stress
BAMF_1403	COG0463	Glycosyl transferase, family 2
BAMF_1403	COG0457	Tetratricopeptide repeat
BAMF_1405	COG2814	Major facilitator Superfamily
BAMF_1406	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BAMF_1408	COG1404	Belongs to the peptidase S8 family
BAMF_1409	COG1366	Belongs to the anti-sigma-factor antagonist family
BAMF_1410	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
BAMF_1411	COG1122	ATPase activity
BAMF_1412	COG4721	ABC-type cobalt transport system, permease component
BAMF_1413	COG1388	LysM domain
BAMF_1413	COG3858	chitin binding
BAMF_1415	COG2239	Acts as a magnesium transporter
BAMF_1416	COG0789	Transcriptional regulator
BAMF_1419	COG1846	Transcriptional regulator
BAMF_1420	COG0726	polysaccharide deacetylase
BAMF_1421	COG3285	dna ligase
BAMF_1421	COG1793	dna ligase
BAMF_1422	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
BAMF_1423	COG3300	MHYT domain
BAMF_1423	COG5001	Diguanylate cyclase
BAMF_1424	COG0586	Pfam SNARE associated Golgi protein
BAMF_1425	COG0861	Integral membrane protein TerC family
BAMF_1426	COG1191	sigma factor activity
BAMF_1431	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
BAMF_1432	COG2323	membrane
BAMF_1434	COG3594	Acyltransferase
BAMF_1435	COG5002	protein histidine kinase activity
BAMF_1436	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
BAMF_1439	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BAMF_1440	COG0436	Aminotransferase
BAMF_1445	COG3852	Histidine kinase
BAMF_1446	COG1846	Transcriptional regulator
BAMF_1447	COG1360	Flagellar Motor Protein
BAMF_1448	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
BAMF_1449	COG0542	response to heat
BAMF_1450	COG3949	Membrane
BAMF_1453	COG0720	synthase
BAMF_1454	COG0602	queuosine metabolic process
BAMF_1457	COG4873	Protein conserved in bacteria
BAMF_1459	COG3773	Cell wall hydrolase
BAMF_1460	COG2244	polysaccharide biosynthetic process
BAMF_1461	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BAMF_1462	COG2217	Heavy metal translocating P-type atpase
BAMF_1463	COG0006	proline dipeptidase activity
BAMF_1464	COG1609	Transcriptional regulator
BAMF_1465	COG3711	transcriptional antiterminator
BAMF_1466	COG1263	PTS System
BAMF_1466	COG2190	(PTS) system
BAMF_1466	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BAMF_1467	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
BAMF_1468	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
BAMF_1470	COG1533	DNA photolyase activity
BAMF_1471	COG0840	transmembrane signaling receptor activity
BAMF_1472	COG2084	Dehydrogenase
BAMF_1473	COG2340	Cysteine-rich secretory protein family
BAMF_1474	COG0768	penicillin binding
BAMF_1475	COG4191	Histidine kinase
BAMF_1476	COG0436	Aminotransferase
BAMF_1478	COG0784	Response regulator, receiver
BAMF_1478	COG0835	chemotaxis
BAMF_1480	COG2814	Major facilitator Superfamily
BAMF_1481	COG1376	ErfK ybiS ycfS ynhG family protein
BAMF_1482	COG1408	metallophosphoesterase
BAMF_1483	COG1028	Short-chain dehydrogenase reductase Sdr
BAMF_1485	COG2200	EAL domain
BAMF_1486	COG4703	Protein of unknown function (DUF1797)
BAMF_1487	COG1978	Selenoprotein B, glycine betaine sarcosine D-proline reductase family
BAMF_1489	COG0517	IMP dehydrogenase activity
BAMF_1490	COG0583	DNA-binding transcription factor activity
BAMF_1491	COG0716	FMN binding
BAMF_1493	COG0716	FMN binding
BAMF_1497	COG0668	transmembrane transport
BAMF_1498	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BAMF_1499	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BAMF_1503	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
BAMF_1504	COG0303	'Molybdopterin
BAMF_1505	COG1763	Mo-molybdopterin cofactor biosynthetic process
BAMF_1506	COG0314	molybdopterin synthase activity
BAMF_1507	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
BAMF_1509	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BAMF_1510	COG1136	(ABC) transporter
BAMF_1511	COG0577	efflux transmembrane transporter activity
BAMF_1512	COG1349	DNA-binding transcription factor activity
BAMF_1513	COG1105	Belongs to the carbohydrate kinase PfkB family
BAMF_1514	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BAMF_1514	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BAMF_1514	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BAMF_1515	COG0681	Belongs to the peptidase S26 family
BAMF_1517	COG0488	(ABC) transporter
BAMF_1518	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
BAMF_1519	COG2309	aminopeptidase activity
BAMF_1521	COG1077	Cell shape determining protein MreB Mrl
BAMF_1522	COG2002	toxin-antitoxin pair type II binding
BAMF_1523	COG3852	Histidine kinase
BAMF_1524	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
BAMF_1524	COG2105	PFAM AIG2 family protein
BAMF_1525	COG0569	domain protein
BAMF_1527	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
BAMF_1529	COG0561	phosphatase activity
BAMF_1530	COG0242	peptide deformylase activity
BAMF_1532	COG0497	DNA recombination
BAMF_1533	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
BAMF_1534	COG0022	dehydrogenase e1 component
BAMF_1535	COG0508	dehydrogenase complex catalyzes the overall conversion of
BAMF_1536	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BAMF_1537	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BAMF_1540	COG1982	Orn Lys Arg decarboxylase major
BAMF_1544	COG0483	inositol monophosphate 1-phosphatase activity
BAMF_1546	COG3227	Zinc metalloprotease (Elastase)
BAMF_1553	COG4896	Protein conserved in bacteria
BAMF_1555	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
BAMF_1556	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
BAMF_1557	COG2066	Belongs to the glutaminase family
BAMF_1559	COG0772	Belongs to the SEDS family
BAMF_1560	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
BAMF_1563	COG2010	Cytochrome c
BAMF_1563	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
BAMF_1564	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
BAMF_1565	COG1845	cytochrome c oxidase, subunit III
BAMF_1566	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
BAMF_1567	COG3336	cytochrome c oxidase
BAMF_1569	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
BAMF_1570	COG2340	Cysteine-rich secretory protein family
BAMF_1573	COG3679	Belongs to the UPF0342 family
BAMF_1575	COG0742	ribosomal rna small subunit methyltransferase
BAMF_1577	COG3314	Sporulation integral membrane protein YlbJ
BAMF_1578	COG1752	Esterase of the alpha-beta hydrolase superfamily
BAMF_1579	COG3480	Lon protease (S16) C-terminal proteolytic domain
BAMF_1581	COG1399	metal-binding, possibly nucleic acid-binding protein
BAMF_1582	COG0333	Belongs to the bacterial ribosomal protein bL32 family
BAMF_1585	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
BAMF_1589	COG4839	cell division protein FtsL
BAMF_1591	COG0768	penicillin binding
BAMF_1595	COG0772	Belongs to the SEDS family
BAMF_1598	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
BAMF_1599	COG0849	cell division
BAMF_1600	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
BAMF_1601	COG4412	M6 family metalloprotease domain protein
BAMF_1601	COG1404	Belongs to the peptidase S8 family
BAMF_1603	COG1191	sigma factor activity
BAMF_1604	COG1191	sigma factor activity
BAMF_1605	COG1119	ATPase activity
BAMF_1606	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BAMF_1607	COG1873	PFAM PRC-barrel domain
BAMF_1609	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
BAMF_1611	COG0762	integral membrane protein
BAMF_1612	COG2302	S4 RNA-binding domain
BAMF_1613	COG3599	regulation of cell shape
BAMF_1614	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
BAMF_1615	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
BAMF_1617	COG0564	pseudouridine synthase activity
BAMF_1619	COG2233	PERMEase
BAMF_1621	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
BAMF_1622	COG0505	Belongs to the CarA family
BAMF_1623	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
BAMF_1626	COG0284	orotidine-5'-phosphate decarboxylase activity
BAMF_1627	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
BAMF_1629	COG0306	phosphate transporter
BAMF_1632	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
BAMF_1633	COG2138	Cobalamin (vitamin B12) biosynthesis CbiX protein
BAMF_1634	COG1648	precorrin-2 dehydrogenase activity
BAMF_1637	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
BAMF_1638	COG1561	YicC-like family, N-terminal region
BAMF_1639	COG2052	Domain of unknown function (DUF370)
BAMF_1640	COG0194	GDP metabolic process
BAMF_1642	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
BAMF_1643	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
BAMF_1644	COG0242	peptide deformylase activity
BAMF_1646	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
BAMF_1646	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
BAMF_1648	COG0631	protein serine/threonine phosphatase activity
BAMF_1649	COG0515	serine threonine protein kinase
BAMF_1649	COG2815	serine threonine protein kinase
BAMF_1651	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
BAMF_1652	COG1564	THIamine pyrophosphokinase
BAMF_1655	COG1302	Protein conserved in bacteria
BAMF_1656	COG1461	Dihydroxyacetone kinase
BAMF_1657	COG1760	l-serine dehydratase
BAMF_1658	COG1760	l-serine dehydratase
BAMF_1659	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
BAMF_1662	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
BAMF_1663	COG1028	Short-chain dehydrogenase reductase Sdr
BAMF_1664	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BAMF_1666	COG1196	nuclear chromosome segregation
BAMF_1667	COG0552	protein localization to endoplasmic reticulum
BAMF_1669	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
BAMF_1671	COG1837	Belongs to the UPF0109 family
BAMF_1676	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
BAMF_1679	COG2257	FlhB HrpN YscU SpaS Family
BAMF_1681	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
BAMF_1682	COG0758	DNA mediated transformation
BAMF_1683	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
BAMF_1685	COG4974	Belongs to the 'phage' integrase family
BAMF_1689	COG1815	bacterial-type flagellum-dependent cell motility
BAMF_1690	COG1558	bacterial-type flagellum-dependent cell motility
BAMF_1691	COG1677	Flagellar hook-basal body complex protein FliE
BAMF_1692	COG1766	The M ring may be actively involved in energy transduction
BAMF_1693	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
BAMF_1694	COG1317	bacterial-type flagellum organization
BAMF_1695	COG1157	protein secretion by the type III secretion system
BAMF_1696	COG2882	bacterial-type flagellum organization
BAMF_1697	COG3334	PFAM MgtE intracellular
BAMF_1698	COG3144	bacterial-type flagellum assembly
BAMF_1699	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
BAMF_1700	COG4786	Flagellar basal body rod
BAMF_1701	COG1582	Flagellar protein (FlbD)
BAMF_1702	COG1580	Controls the rotational direction of flagella during chemotaxis
BAMF_1703	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
BAMF_1704	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
BAMF_1704	COG1776	CheC inhibitor of MCP methylation
BAMF_1705	COG2201	protein-glutamate methylesterase activity
BAMF_1706	COG3190	flagellar
BAMF_1707	COG1338	Plays a role in the flagellum-specific transport system
BAMF_1708	COG1987	bacterial-type flagellum assembly
BAMF_1709	COG1684	flagellar biosynthetic protein fliR
BAMF_1710	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
BAMF_1711	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
BAMF_1712	COG1419	protein localization to endoplasmic reticulum
BAMF_1713	COG0455	bacterial-type flagellum organization
BAMF_1714	COG2201	protein-glutamate methylesterase activity
BAMF_1715	COG0643	Histidine kinase
BAMF_1715	COG2198	Histidine kinase
BAMF_1716	COG0835	chemotaxis
BAMF_1717	COG1776	CheC inhibitor of MCP methylation
BAMF_1719	COG1191	sigma factor activity
BAMF_1725	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
BAMF_1726	COG4589	Belongs to the CDS family
BAMF_1728	COG0750	zinc metalloprotease
BAMF_1730	COG2176	DNA-directed DNA polymerase activity
BAMF_1732	COG0195	Participates in both transcription termination and antitermination
BAMF_1733	COG2740	Nucleic-acid-binding protein implicated in transcription termination
BAMF_1734	COG1358	cellular component organization or biogenesis
BAMF_1736	COG1550	Protein conserved in bacteria
BAMF_1739	COG0196	riboflavin kinase activity
BAMF_1742	COG0726	polysaccharide deacetylase
BAMF_1743	COG0612	Peptidase, M16
BAMF_1744	COG1873	PFAM PRC-barrel domain
BAMF_1745	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BAMF_1746	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
BAMF_1747	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
BAMF_1748	COG0527	aspartate kinase activity
BAMF_1750	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
BAMF_1751	COG0740	serine-type endopeptidase activity
BAMF_1753	COG1674	ftsk spoiiie
BAMF_1753	COG4980	gas vesicle protein
BAMF_1754	COG2188	Transcriptional regulator
BAMF_1755	COG2814	Major facilitator Superfamily
BAMF_1756	COG1846	Transcriptional regulator
BAMF_1757	COG2409	Drug exporters of the RND superfamily
BAMF_1757	COG1033	growth of symbiont in host cell
BAMF_1758	COG0612	Peptidase, M16
BAMF_1759	COG0612	Peptidase, M16
BAMF_1760	COG0300	oxidoreductase activity
BAMF_1763	COG1426	Protein conserved in bacteria
BAMF_1764	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
BAMF_1767	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
BAMF_1769	COG1692	metallophosphoesterase
BAMF_1770	COG2359	stage V sporulation protein S
BAMF_1774	COG4550	Control of competence regulator ComK, YlbF/YmcA
BAMF_1782	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BAMF_1783	COG3425	synthase
BAMF_1784	COG1024	Enoyl-CoA hydratase
BAMF_1785	COG1024	Enoyl-CoA hydratase
BAMF_1786	COG0300	oxidoreductase activity
BAMF_1786	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BAMF_1786	COG0318	PFAM AMP-dependent synthetase and ligase
BAMF_1786	COG3321	synthase
BAMF_1786	COG1028	Short-chain dehydrogenase reductase Sdr
BAMF_1787	COG0300	oxidoreductase activity
BAMF_1787	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BAMF_1787	COG4221	oxidoreductase activity
BAMF_1787	COG3321	synthase
BAMF_1788	COG3321	synthase
BAMF_1788	COG1028	Short-chain dehydrogenase reductase Sdr
BAMF_1788	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BAMF_1788	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BAMF_1788	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BAMF_1788	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BAMF_1788	COG3321	synthase
BAMF_1788	COG1028	Short-chain dehydrogenase reductase Sdr
BAMF_1788	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BAMF_1788	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BAMF_1789	COG1028	Short-chain dehydrogenase reductase Sdr
BAMF_1789	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BAMF_1789	COG4221	oxidoreductase activity
BAMF_1789	COG3321	synthase
BAMF_1790	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BAMF_1790	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
BAMF_1790	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
BAMF_1790	COG3321	synthase
BAMF_1791	COG2124	cytochrome p450
BAMF_1792	COG3209	COG3209 Rhs family protein
BAMF_1793	COG3619	membrane
BAMF_1795	COG1404	Belongs to the peptidase S8 family
BAMF_1796	COG4195	phage-related replication protein
BAMF_1797	COG1764	response to oxidative stress
BAMF_1799	COG2076	Multidrug Resistance protein
BAMF_1807	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BAMF_1808	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BAMF_1809	COG4112	unkown
BAMF_1810	COG0860	N-Acetylmuramoyl-L-alanine amidase
BAMF_1811	COG0464	growth
BAMF_1812	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
BAMF_1813	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
BAMF_1814	COG0789	Transcriptional regulator
BAMF_1815	COG0174	glutamine synthetase
BAMF_1816	COG0582	viral genome integration into host DNA
BAMF_1818	COG1525	nuclease
BAMF_1819	COG4282	regulation of fungal-type cell wall biogenesis
BAMF_1821	COG5444	nuclease activity
BAMF_1825	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
BAMF_1827	COG2226	methyltransferase
BAMF_1829	COG1070	Carbohydrate kinase
BAMF_1831	COG3848	Pyruvate phosphate dikinase
BAMF_1831	COG0574	Belongs to the PEP-utilizing enzyme family
BAMF_1833	COG1063	alcohol dehydrogenase
BAMF_1834	COG0457	Tetratricopeptide repeat
BAMF_1841	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BAMF_1843	COG2323	membrane
BAMF_1845	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BAMF_1847	COG2318	DinB family
BAMF_1848	COG1064	alcohol dehydrogenase
BAMF_1853	COG0456	acetyltransferase
BAMF_1859	COG3397	chitin binding
BAMF_1862	COG5434	Belongs to the glycosyl hydrolase 28 family
BAMF_1863	COG2314	TM2 domain
BAMF_1864	COG0756	dUTP diphosphatase activity
BAMF_1866	COG4195	phage-related replication protein
BAMF_1873	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
BAMF_1875	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
BAMF_1879	COG0785	Cytochrome C biogenesis protein
BAMF_1880	COG2201	protein-glutamate methylesterase activity
BAMF_1881	COG4846	Membrane protein involved in cytochrome C biogenesis
BAMF_1883	COG0071	Belongs to the small heat shock protein (HSP20) family
BAMF_1886	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
BAMF_1887	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BAMF_1891	COG0824	Thioesterase
BAMF_1893	COG4841	protein insertion into membrane
BAMF_1895	COG1832	CoA-binding protein
BAMF_1896	COG0187	DNA topoisomerase II activity
BAMF_1897	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
BAMF_1900	COG1115	amino acid carrier protein
BAMF_1907	COG2205	protein histidine kinase activity
BAMF_1908	COG0745	RESPONSE REGULATOR receiver
BAMF_1910	COG3507	Belongs to the glycosyl hydrolase 43 family
BAMF_1915	COG2721	sulfolactate sulfo-lyase activity
BAMF_1916	COG1028	Short-chain dehydrogenase reductase Sdr
BAMF_1917	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
BAMF_1918	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
BAMF_1919	COG2124	cytochrome p450
BAMF_1920	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
BAMF_1923	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
BAMF_1925	COG2246	polysaccharide biosynthetic process
BAMF_1926	COG1210	Utp--glucose-1-phosphate uridylyltransferase
BAMF_1927	COG0586	Pfam SNARE associated Golgi protein
BAMF_1928	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
BAMF_1929	COG1024	Enoyl-CoA hydratase
BAMF_1930	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
BAMF_1931	COG0511	ligase activity, forming carbon-carbon bonds
BAMF_1932	COG0439	Biotin carboxylase
BAMF_1933	COG0318	PFAM AMP-dependent synthetase and ligase
BAMF_1934	COG0318	PFAM AMP-dependent synthetase and ligase
BAMF_1935	COG1960	acyl-CoA dehydrogenase activity
BAMF_1936	COG1649	PFAM Uncharacterised BCR, COG1649
BAMF_1938	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BAMF_1938	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
BAMF_1939	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BAMF_1940	COG2027	D-alanyl-D-alanine carboxypeptidase
BAMF_1941	COG2017	converts alpha-aldose to the beta-anomer
BAMF_1942	COG0534	Mate efflux family protein
BAMF_1944	COG0582	viral genome integration into host DNA
BAMF_1945	COG0166	Belongs to the GPI family
BAMF_1946	COG0405	Gamma-glutamyltransferase
BAMF_1947	COG2814	Major facilitator Superfamily
BAMF_1948	COG0640	Transcriptional regulator
BAMF_1949	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
BAMF_1950	COG0493	'glutamate synthase
BAMF_1951	COG0067	glutamate synthase
BAMF_1951	COG0070	glutamate synthase
BAMF_1951	COG0069	glutamate synthase activity
BAMF_1952	COG0583	DNA-binding transcription factor activity
BAMF_1953	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
BAMF_1956	COG0300	oxidoreductase activity
BAMF_1957	COG4768	protein containing a divergent version of the methyl-accepting chemotaxis-like domain
BAMF_1959	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BAMF_1961	COG2323	membrane
BAMF_1963	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BAMF_1969	COG2814	Major facilitator Superfamily
BAMF_1970	COG1070	Carbohydrate kinase
BAMF_1971	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
BAMF_1972	COG0243	molybdopterin cofactor binding
BAMF_1978	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BAMF_1979	COG0662	Cupin 2, conserved barrel domain protein
BAMF_1979	COG2207	Transcriptional regulator
BAMF_1980	COG1309	transcriptional regulator
BAMF_1981	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BAMF_1983	COG0640	Transcriptional regulator
BAMF_1984	COG0741	lytic transglycosylase activity
BAMF_1985	COG2322	membrane
BAMF_1988	COG1619	proteins homologs of microcin C7 resistance protein MccF
BAMF_1990	COG3584	3D domain protein
BAMF_1990	COG1388	LysM domain
BAMF_1991	COG0514	ATP-dependent DNA helicase (RecQ)
BAMF_1992	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
BAMF_1993	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
BAMF_1996	COG0071	Belongs to the small heat shock protein (HSP20) family
BAMF_2002	COG1012	belongs to the aldehyde dehydrogenase family
BAMF_2003	COG1657	PFAM Prenyltransferase squalene oxidase
BAMF_2004	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
BAMF_2005	COG0733	neurotransmitter:sodium symporter activity
BAMF_2006	COG0385	Bile acid
BAMF_2007	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BAMF_2008	COG0508	dehydrogenase complex catalyzes the overall conversion of
BAMF_2010	COG4548	von Willebrand factor, type A
BAMF_2011	COG0714	Associated with various cellular activities
BAMF_2012	COG2032	superoxide dismutase activity
BAMF_2013	COG0791	NLP P60 protein
BAMF_2013	COG1388	LysM domain
BAMF_2014	COG1819	glycosyl
BAMF_2015	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
BAMF_2016	COG0534	Mate efflux family protein
BAMF_2017	COG1366	Belongs to the anti-sigma-factor antagonist family
BAMF_2018	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
BAMF_2019	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
BAMF_2021	COG2962	Rard protein
BAMF_2024	COG1942	4-Oxalocrotonate Tautomerase
BAMF_2025	COG1733	regulation of RNA biosynthetic process
BAMF_2026	COG0778	Nitroreductase
BAMF_2027	COG0400	carboxylic ester hydrolase activity
BAMF_2028	COG0346	lactoylglutathione lyase activity
BAMF_2030	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BAMF_2032	COG2723	6-phospho-beta-galactosidase activity
BAMF_2033	COG2188	Transcriptional regulator
BAMF_2034	COG0793	Belongs to the peptidase S41A family
BAMF_2034	COG3409	Peptidoglycan-binding domain 1 protein
BAMF_2035	COG2226	methyltransferase
BAMF_2037	COG1876	peptidase activity
BAMF_2041	COG0671	phosphoesterase, PA-phosphatase related
BAMF_2045	COG0346	lactoylglutathione lyase activity
BAMF_2048	COG1509	lysine 2,3-aminomutase activity
BAMF_2049	COG0456	acetyltransferase
BAMF_2050	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BAMF_2051	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
BAMF_2052	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
BAMF_2053	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
BAMF_2055	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
BAMF_2057	COG0456	acetyltransferase
BAMF_2058	COG0463	Glycosyl transferase, family 2
BAMF_2061	COG4641	Protein conserved in bacteria
BAMF_2063	COG1086	Polysaccharide biosynthesis protein
BAMF_2069	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
BAMF_2070	COG1086	Polysaccharide biosynthesis protein
BAMF_2073	COG1846	Transcriptional regulator
BAMF_2074	COG4698	Protein conserved in bacteria
BAMF_2075	COG2755	lipolytic protein G-D-S-L family
BAMF_2076	COG1999	signal sequence binding
BAMF_2078	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
BAMF_2079	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
BAMF_2080	COG1272	protein, Hemolysin III
BAMF_2081	COG0204	Acyl-transferase
BAMF_2082	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
BAMF_2083	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
BAMF_2085	COG2136	Putative SAM-dependent methyltransferase
BAMF_2085	COG2521	methyltransferase
BAMF_2088	COG1413	lyase activity
BAMF_2089	COG1418	mRNA catabolic process
BAMF_2090	COG0386	Belongs to the glutathione peroxidase family
BAMF_2092	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
BAMF_2093	COG1278	Cold shock
BAMF_2097	COG0328	RNA-DNA hybrid ribonuclease activity
BAMF_2098	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
BAMF_2099	COG0328	RNA-DNA hybrid ribonuclease activity
BAMF_2101	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BAMF_2104	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
BAMF_2105	COG1755	Isoprenylcysteine carboxyl methyltransferase
BAMF_2106	COG3424	synthase
BAMF_2110	COG2233	PERMEase
BAMF_2112	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
BAMF_2113	COG1199	ATP-dependent helicase activity
BAMF_2117	COG0116	Belongs to the methyltransferase superfamily
BAMF_2121	COG3359	exonuclease
BAMF_2122	COG1111	helicase
BAMF_2122	COG1205	dead DEAH box helicase
BAMF_2123	COG2190	(PTS) system
BAMF_2124	COG0071	Belongs to the small heat shock protein (HSP20) family
BAMF_2132	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BAMF_2132	COG4499	WXG100 protein secretion system (Wss), protein YukC
BAMF_2134	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
BAMF_2135	COG3935	DnaD domain protein
BAMF_2137	COG0436	Aminotransferase
BAMF_2138	COG5353	protein conserved in bacteria
BAMF_2140	COG1199	ATP-dependent helicase activity
BAMF_2140	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BAMF_2146	COG0438	transferase activity, transferring glycosyl groups
BAMF_2147	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
BAMF_2150	COG1694	Mazg nucleotide pyrophosphohydrolase
BAMF_2151	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BAMF_2152	COG2140	Oxalate decarboxylase
BAMF_2154	COG4347	Protein of unknown function (DUF1405)
BAMF_2155	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
BAMF_2155	COG2010	Cytochrome c
BAMF_2156	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
BAMF_2157	COG0723	plastoquinol--plastocyanin reductase activity
BAMF_2160	COG0457	Tetratricopeptide repeat
BAMF_2162	COG0287	Prephenate dehydrogenase
BAMF_2169	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
BAMF_2170	COG4401	Chorismate mutase type I
BAMF_2173	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
BAMF_2174	COG0105	UTP biosynthetic process
BAMF_2175	COG0142	geranyltranstransferase activity
BAMF_2177	COG0142	geranyltranstransferase activity
BAMF_2180	COG0776	regulation of translation
BAMF_2181	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
BAMF_2189	COG0539	negative regulation of cytoplasmic translation
BAMF_2192	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
BAMF_2193	COG2959	enzyme of heme biosynthesis
BAMF_2194	COG3409	Peptidoglycan-binding domain 1 protein
BAMF_2194	COG3773	Cell wall hydrolase
BAMF_2195	COG2339	peptidase activity
BAMF_2196	COG0492	ferredoxin-NADP+ reductase activity
BAMF_2197	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
BAMF_2198	COG4862	establishment of competence for transformation
BAMF_2199	COG1408	metallophosphoesterase
BAMF_2201	COG1388	LysM domain
BAMF_2202	COG1266	CAAX protease self-immunity
BAMF_2203	COG0514	ATP-dependent DNA helicase (RecQ)
BAMF_2204	COG4955	Helix-turn-helix domain
BAMF_2205	COG1141	Ferredoxin
BAMF_2206	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
BAMF_2207	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
BAMF_2209	COG1595	DNA-templated transcription, initiation
BAMF_2210	COG5002	protein histidine kinase activity
BAMF_2211	COG0745	RESPONSE REGULATOR receiver
BAMF_2212	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BAMF_2213	COG1333	cytochrome c biogenesis protein
BAMF_2214	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BAMF_2215	COG1187	pseudouridine synthase activity
BAMF_2216	COG0700	Nucleoside recognition
BAMF_2217	COG2715	membrane protein required for spore maturation
BAMF_2218	COG1686	Belongs to the peptidase S11 family
BAMF_2222	COG1547	Domain of unknown function (DUF309)
BAMF_2223	COG0456	acetyltransferase
BAMF_2224	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
BAMF_2225	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
BAMF_2225	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
BAMF_2226	COG0307	riboflavin synthase, alpha
BAMF_2227	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BAMF_2227	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BAMF_2229	COG0681	Belongs to the peptidase S26 family
BAMF_2231	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
BAMF_2232	COG4086	secreted protein
BAMF_2233	COG0019	diaminopimelate decarboxylase activity
BAMF_2234	COG0697	spore germination
BAMF_2237	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BAMF_2240	COG1191	sigma factor activity
BAMF_2242	COG1366	Belongs to the anti-sigma-factor antagonist family
BAMF_2243	COG1686	Belongs to the peptidase S11 family
BAMF_2244	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
BAMF_2245	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
BAMF_2246	COG4974	Belongs to the 'phage' integrase family
BAMF_2248	COG0735	belongs to the Fur family
BAMF_2249	COG1300	Membrane
BAMF_2252	COG0281	malic enzyme
BAMF_2253	COG1757	Na H antiporter
BAMF_2254	COG1027	Aspartate ammonia-lyase
BAMF_2255	COG0252	asparaginase activity
BAMF_2256	COG1396	sequence-specific DNA binding
BAMF_2257	COG1379	DNA repair
BAMF_2258	COG0494	nUDIX hydrolase
BAMF_2260	COG0667	Aldo Keto reductase
BAMF_2262	COG1073	alpha beta
BAMF_2264	COG4918	Iron-sulphur cluster biosynthesis
BAMF_2265	COG0456	acetyltransferase
BAMF_2265	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
BAMF_2267	COG0456	acetyltransferase
BAMF_2268	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
BAMF_2271	COG0628	permease
BAMF_2274	COG3048	D-serine ammonia-lyase activity
BAMF_2275	COG0300	oxidoreductase activity
BAMF_2276	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BAMF_2277	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
BAMF_2282	COG0596	Alpha beta hydrolase
BAMF_2285	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
BAMF_2286	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
BAMF_2289	COG0706	membrane insertase activity
BAMF_2290	COG2195	Cleaves the N-terminal amino acid of tripeptides
BAMF_2291	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
BAMF_2292	COG0346	lactoylglutathione lyase activity
BAMF_2293	COG1376	ErfK ybiS ycfS ynhG family protein
BAMF_2294	COG4129	membrane
BAMF_2295	COG1126	abc transporter atp-binding protein
BAMF_2296	COG0765	amino acid transport
BAMF_2297	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BAMF_2299	COG1597	lipid kinase activity
BAMF_2300	COG0508	dehydrogenase complex catalyzes the overall conversion of
BAMF_2301	COG0022	dehydrogenase e1 component
BAMF_2302	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
BAMF_2303	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BAMF_2304	COG3426	butyrate kinase activity
BAMF_2305	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
BAMF_2306	COG0280	phosphate acetyltransferase
BAMF_2307	COG3290	protein histidine kinase activity
BAMF_2307	COG3829	transcription factor binding
BAMF_2309	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
BAMF_2310	COG2079	MmgE PrpD family protein
BAMF_2311	COG0372	Belongs to the citrate synthase family
BAMF_2312	COG1960	acyl-CoA dehydrogenase activity
BAMF_2313	COG1250	3-hydroxyacyl-CoA dehydrogenase
BAMF_2314	COG1250	3-hydroxyacyl-CoA dehydrogenase
BAMF_2315	COG0183	Belongs to the thiolase family
BAMF_2316	COG0584	glycerophosphoryl diester phosphodiesterase
BAMF_2317	COG0860	N-Acetylmuramoyl-L-alanine amidase
BAMF_2322	COG1902	pentaerythritol trinitrate reductase activity
BAMF_2325	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
BAMF_2326	COG0745	RESPONSE REGULATOR receiver
BAMF_2327	COG0750	zinc metalloprotease
BAMF_2328	COG0497	DNA recombination
BAMF_2330	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
BAMF_2332	COG0142	geranyltranstransferase activity
BAMF_2334	COG1570	exodeoxyribonuclease VII activity
BAMF_2337	COG1302	Protein conserved in bacteria
BAMF_2338	COG0439	Biotin carboxylase
BAMF_2339	COG0511	ligase activity, forming carbon-carbon bonds
BAMF_2347	COG3854	ATPases associated with a variety of cellular activities
BAMF_2350	COG0006	proline dipeptidase activity
BAMF_2352	COG3872	metal-dependent enzyme
BAMF_2354	COG1752	Esterase of the alpha-beta hydrolase superfamily
BAMF_2357	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BAMF_2361	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
BAMF_2364	COG1396	sequence-specific DNA binding
BAMF_2366	COG0681	Belongs to the peptidase S26 family
BAMF_2371	COG4940	Competence protein ComGF
BAMF_2372	COG4970	Tfp pilus assembly protein FimT
BAMF_2373	COG4537	Required for transformation and DNA binding
BAMF_2374	COG1459	type II secretion system
BAMF_2375	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BAMF_2376	COG0598	Magnesium transport protein CorA
BAMF_2377	COG1253	flavin adenine dinucleotide binding
BAMF_2378	COG1366	Belongs to the anti-sigma-factor antagonist family
BAMF_2379	COG1393	Belongs to the ArsC family
BAMF_2381	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BAMF_2383	COG0011	TIGRFAM Protein of
BAMF_2385	COG2866	Carboxypeptidase
BAMF_2386	COG1940	carbohydrate kinase activity
BAMF_2387	COG4483	Protein conserved in bacteria
BAMF_2388	COG1757	Na H antiporter
BAMF_2390	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
BAMF_2391	COG0267	Belongs to the bacterial ribosomal protein bL33 family
BAMF_2393	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
BAMF_2394	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
BAMF_2395	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
BAMF_2396	COG0581	inorganic phosphate transmembrane transporter activity
BAMF_2397	COG0573	inorganic phosphate transmembrane transporter activity
BAMF_2398	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
BAMF_2400	COG0477	Major facilitator Superfamily
BAMF_2401	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
BAMF_2402	COG2839	Protein conserved in bacteria
BAMF_2403	COG5521	maltodextrose utilization protein MalA
BAMF_2404	COG1388	LysM domain
BAMF_2406	COG4709	membrane
BAMF_2407	COG5663	Belongs to the 5'(3')-deoxyribonucleotidase family
BAMF_2408	COG0735	belongs to the Fur family
BAMF_2409	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BAMF_2412	COG0513	Belongs to the DEAD box helicase family
BAMF_2415	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
BAMF_2416	COG2384	SAM-dependent methyltransferase
BAMF_2417	COG2010	Cytochrome c
BAMF_2418	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
BAMF_2419	COG0358	DNA primase activity
BAMF_2422	COG0517	IMP dehydrogenase activity
BAMF_2423	COG0751	glycine-tRNA ligase activity
BAMF_2426	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
BAMF_2427	COG0295	cytidine deaminase activity
BAMF_2428	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
BAMF_2430	COG1480	7TM receptor with intracellular HD hydrolase
BAMF_2431	COG1702	phosphate starvation-inducible protein PhoH
BAMF_2432	COG0561	phosphatase activity
BAMF_2435	COG4864	UPF0365 protein
BAMF_2436	COG1030	water channel activity
BAMF_2437	COG1610	YqeY-like protein
BAMF_2438	COG0828	Belongs to the bacterial ribosomal protein bS21 family
BAMF_2439	COG1283	sodium-dependent phosphate transmembrane transporter activity
BAMF_2440	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
BAMF_2441	COG1385	rRNA (uridine-N3-)-methyltransferase activity
BAMF_2447	COG0635	Involved in the biosynthesis of porphyrin-containing compound
BAMF_2450	COG0860	N-Acetylmuramoyl-L-alanine amidase
BAMF_2453	COG1466	dna polymerase III delta subunit
BAMF_2455	COG0658	competence protein
BAMF_2455	COG2333	competence protein COMEC
BAMF_2456	COG2131	deaminase
BAMF_2457	COG1596	polysaccharide export
BAMF_2457	COG1555	photosystem II stabilization
BAMF_2458	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
BAMF_2459	COG2226	methyltransferase
BAMF_2460	COG0799	negative regulation of ribosome biogenesis
BAMF_2461	COG1713	HD superfamily hydrolase involved in NAD metabolism
BAMF_2463	COG1534	Rna-binding protein
BAMF_2464	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
BAMF_2465	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
BAMF_2466	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
BAMF_2468	COG2755	lipolytic protein G-D-S-L family
BAMF_2469	COG0726	polysaccharide deacetylase
BAMF_2470	COG0398	Pfam SNARE associated Golgi protein
BAMF_2473	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
BAMF_2475	COG1028	Short-chain dehydrogenase reductase Sdr
BAMF_2478	COG0512	Glutamine amidotransferase of anthranilate synthase
BAMF_2483	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
BAMF_2486	COG2378	regulation of single-species biofilm formation
BAMF_2487	COG0693	protein deglycase activity
BAMF_2493	COG3628	GPW Gp25 family protein
BAMF_2494	COG1794	racemase activity, acting on amino acids and derivatives
BAMF_2496	COG0656	L-ascorbic acid biosynthetic process
BAMF_2498	COG4653	Phage capsid family
BAMF_2499	COG3723	Recombinational DNA repair protein, rece pathway
BAMF_2503	COG3708	Transcriptional regulator
BAMF_2503	COG2207	Transcriptional regulator
BAMF_2505	COG0563	adenylate kinase activity
BAMF_2507	COG2814	Major facilitator Superfamily
BAMF_2508	COG0456	acetyltransferase
BAMF_2509	COG2318	DinB family
BAMF_2511	COG0561	phosphatase activity
BAMF_2512	COG0561	phosphatase activity
BAMF_2513	COG0561	phosphatase activity
BAMF_2515	COG1482	cell wall glycoprotein biosynthetic process
BAMF_2516	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BAMF_2516	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BAMF_2516	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BAMF_2517	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BAMF_2517	COG3711	transcriptional antiterminator
BAMF_2519	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
BAMF_2520	COG0583	DNA-binding transcription factor activity
BAMF_2521	COG2814	Major facilitator Superfamily
BAMF_2522	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
BAMF_2522	COG2124	cytochrome p450
BAMF_2523	COG1309	transcriptional regulator
BAMF_2524	COG2226	methyltransferase
BAMF_2528	COG2116	formate transmembrane transporter activity
BAMF_2529	COG5609	conserved protein (DUF2294)
BAMF_2530	COG3383	formate dehydrogenase (NAD+) activity
BAMF_2531	COG2427	Protein of unknown function (DUF1641)
BAMF_2533	COG0626	cystathionine gamma-synthase activity
BAMF_2534	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
BAMF_2539	COG0768	penicillin binding
BAMF_2545	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
BAMF_2550	COG0628	permease
BAMF_2551	COG1126	abc transporter atp-binding protein
BAMF_2552	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BAMF_2553	COG0765	amino acid transport
BAMF_2554	COG0765	amino acid transport
BAMF_2557	COG3881	PFAM PRC-barrel domain
BAMF_2558	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
BAMF_2559	COG0457	Tetratricopeptide repeat
BAMF_2561	COG1104	cysteine desulfurase activity
BAMF_2562	COG1959	2 iron, 2 sulfur cluster binding
BAMF_2563	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
BAMF_2564	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
BAMF_2568	COG4991	sh3 domain protein
BAMF_2568	COG3103	Sh3 type 3 domain protein
BAMF_2568	COG0860	N-Acetylmuramoyl-L-alanine amidase
BAMF_2569	COG1490	D-aminoacyl-tRNA deacylase activity
BAMF_2570	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BAMF_2572	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
BAMF_2572	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
BAMF_2573	COG5416	Lipopolysaccharide assembly protein A domain
BAMF_2574	COG0490	domain, Protein
BAMF_2575	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
BAMF_2575	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
BAMF_2577	COG2244	polysaccharide biosynthetic process
BAMF_2578	COG2323	membrane
BAMF_2580	COG1862	Preprotein translocase
BAMF_2590	COG1388	LysM domain
BAMF_2592	COG0157	Belongs to the NadC ModD family
BAMF_2593	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
BAMF_2594	COG1104	cysteine desulfurase activity
BAMF_2595	COG1827	regulation of RNA biosynthetic process
BAMF_2596	COG0077	Prephenate dehydratase
BAMF_2599	COG3290	protein histidine kinase activity
BAMF_2600	COG0211	Belongs to the bacterial ribosomal protein bL27 family
BAMF_2601	COG2868	ribosomal protein
BAMF_2603	COG1994	Peptidase M50
BAMF_2604	COG0739	heme binding
BAMF_2605	COG2894	cell division
BAMF_2606	COG0850	regulation of cytokinetic process
BAMF_2607	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
BAMF_2608	COG1792	Involved in formation and maintenance of cell shape
BAMF_2609	COG1077	Cell shape determining protein MreB Mrl
BAMF_2613	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
BAMF_2614	COG0285	dihydrofolate synthase activity
BAMF_2615	COG0525	valine-tRNA ligase activity
BAMF_2617	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
BAMF_2618	COG1388	LysM domain
BAMF_2620	COG0113	porphobilinogen synthase activity
BAMF_2621	COG1587	Uroporphyrinogen-III synthase
BAMF_2623	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BAMF_2627	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
BAMF_2628	COG0470	DNA polymerase III
BAMF_2628	COG1067	ATP-dependent peptidase activity
BAMF_2631	COG0457	Tetratricopeptide repeat
BAMF_2631	COG1477	protein flavinylation
BAMF_2634	COG0473	3-isopropylmalate dehydrogenase activity
BAMF_2637	COG0440	acetolactate synthase activity
BAMF_2638	COG0028	Belongs to the TPP enzyme family
BAMF_2641	COG0622	Phosphoesterase
BAMF_2642	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
BAMF_2644	COG5401	PFAM Sporulation and spore germination
BAMF_2646	COG1846	Transcriptional regulator
BAMF_2647	COG2197	response regulator
BAMF_2648	COG0824	Thioesterase
BAMF_2649	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
BAMF_2650	COG1053	succinate dehydrogenase
BAMF_2651	COG2009	succinate dehydrogenase
BAMF_2652	COG1719	4-vinyl reductase, 4VR
BAMF_2653	COG0527	aspartate kinase activity
BAMF_2655	COG3118	belongs to the thioredoxin family
BAMF_2656	COG3534	alpha-L-arabinofuranosidase
BAMF_2657	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
BAMF_2658	COG2086	electron transfer activity
BAMF_2659	COG1024	Enoyl-CoA hydratase
BAMF_2660	COG1309	transcriptional regulator
BAMF_2661	COG0318	PFAM AMP-dependent synthetase and ligase
BAMF_2663	COG3766	membrane
BAMF_2665	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
BAMF_2665	COG1796	DNA polymerase
BAMF_2666	COG1286	toxin biosynthetic process
BAMF_2669	COG0072	phenylalanine-tRNA ligase activity
BAMF_2669	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BAMF_2670	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
BAMF_2671	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BAMF_2673	COG3835	regulator
BAMF_2674	COG0277	FAD linked oxidase domain protein
BAMF_2675	COG0247	lactate metabolic process
BAMF_2676	COG1966	Carbon starvation protein
BAMF_2677	COG3534	alpha-L-arabinofuranosidase
BAMF_2678	COG0395	ABC-type sugar transport system, permease component
BAMF_2679	COG1175	transmembrane transport
BAMF_2680	COG1653	transport
BAMF_2682	COG0647	UMP catabolic process
BAMF_2683	COG0235	Class ii aldolase
BAMF_2684	COG1069	ribulokinase activity
BAMF_2685	COG2160	L-arabinose isomerase activity
BAMF_2686	COG3507	Belongs to the glycosyl hydrolase 43 family
BAMF_2687	COG1363	Peptidase, m42
BAMF_2689	COG3326	Membrane
BAMF_2690	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
BAMF_2692	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
BAMF_2693	COG1346	cytolysis
BAMF_2694	COG1380	Effector of murein hydrolase LrgA
BAMF_2695	COG3279	Response regulator of the LytR AlgR family
BAMF_2696	COG3275	phosphorelay sensor kinase activity
BAMF_2700	COG0398	Pfam SNARE associated Golgi protein
BAMF_2701	COG1484	DNA-dependent DNA replication
BAMF_2702	COG3611	Membrane attachment protein
BAMF_2705	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
BAMF_2706	COG1733	regulation of RNA biosynthetic process
BAMF_2707	COG2814	Major facilitator Superfamily
BAMF_2708	COG0656	L-ascorbic acid biosynthetic process
BAMF_2709	COG0237	dephospho-CoA kinase activity
BAMF_2710	COG1971	Probably functions as a manganese efflux pump
BAMF_2711	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
BAMF_2712	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BAMF_2712	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BAMF_2713	COG5002	protein histidine kinase activity
BAMF_2714	COG0745	RESPONSE REGULATOR receiver
BAMF_2716	COG0538	isocitrate dehydrogenase activity
BAMF_2717	COG0372	Belongs to the citrate synthase family
BAMF_2719	COG0628	permease
BAMF_2720	COG3030	protein affecting phage T7 exclusion by the F plasmid
BAMF_2721	COG0469	pyruvate kinase activity
BAMF_2725	COG0281	malic enzyme
BAMF_2726	COG0587	DNA-directed DNA polymerase activity
BAMF_2730	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
BAMF_2732	COG4109	DRTGG domain
BAMF_2734	COG1028	Short-chain dehydrogenase reductase Sdr
BAMF_2738	COG0521	Mo-molybdopterin cofactor biosynthetic process
BAMF_2740	COG0827	DNA restriction-modification system
BAMF_2741	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
BAMF_2742	COG3874	Sporulation protein YtfJ
BAMF_2744	COG1714	RDD family
BAMF_2745	COG0616	signal peptide processing
BAMF_2746	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
BAMF_2747	COG1574	metal-dependent hydrolase with the TIM-barrel fold
BAMF_2748	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
BAMF_2751	COG1104	cysteine desulfurase activity
BAMF_2752	COG1114	Component of the transport system for branched-chain amino acids
BAMF_2754	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
BAMF_2755	COG1309	transcriptional regulator
BAMF_2756	COG1956	GAF domain-containing protein
BAMF_2757	COG2203	Gaf domain
BAMF_2757	COG2199	diguanylate cyclase activity
BAMF_2759	COG1017	nitric oxide dioxygenase activity
BAMF_2759	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
BAMF_2760	COG0693	protein deglycase activity
BAMF_2762	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
BAMF_2763	COG1378	Sugar-specific transcriptional regulator TrmB
BAMF_2764	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
BAMF_2768	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
BAMF_2769	COG0454	-acetyltransferase
BAMF_2770	COG0517	IMP dehydrogenase activity
BAMF_2771	COG0123	including yeast histone deacetylase and acetoin utilization protein
BAMF_2772	COG1360	Flagellar Motor Protein
BAMF_2773	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
BAMF_2774	COG1609	Transcriptional regulator
BAMF_2775	COG1605	Chorismate mutase
BAMF_2775	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
BAMF_2776	COG3118	belongs to the thioredoxin family
BAMF_2777	COG4980	gas vesicle protein
BAMF_2778	COG4768	protein containing a divergent version of the methyl-accepting chemotaxis-like domain
BAMF_2780	COG1674	ftsk spoiiie
BAMF_2781	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BAMF_2783	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BAMF_2785	COG1363	Peptidase, m42
BAMF_2786	COG5584	Small secreted protein
BAMF_2787	COG0281	malic enzyme
BAMF_2788	COG0281	malic enzyme
BAMF_2789	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BAMF_2792	COG0510	thiamine kinase activity
BAMF_2793	COG1597	lipid kinase activity
BAMF_2795	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
BAMF_2796	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
BAMF_2797	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BAMF_2798	COG2252	PERMEase
BAMF_2799	COG4473	ABC transporter
BAMF_2800	COG1131	(ABC) transporter
BAMF_2801	COG1349	DNA-binding transcription factor activity
BAMF_2802	COG1187	pseudouridine synthase activity
BAMF_2803	COG2244	polysaccharide biosynthetic process
BAMF_2804	COG2081	HI0933 family
BAMF_2805	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
BAMF_2811	COG1486	melibiose metabolic process
BAMF_2813	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BAMF_2816	COG2202	Pas domain
BAMF_2816	COG1366	Belongs to the anti-sigma-factor antagonist family
BAMF_2817	COG2814	Major facilitator Superfamily
BAMF_2818	COG5522	Integral membrane protein (intg_mem_TP0381)
BAMF_2819	COG0577	efflux transmembrane transporter activity
BAMF_2820	COG1136	(ABC) transporter
BAMF_2821	COG2205	protein histidine kinase activity
BAMF_2822	COG0745	RESPONSE REGULATOR receiver
BAMF_2823	COG0577	efflux transmembrane transporter activity
BAMF_2824	COG1136	(ABC) transporter
BAMF_2828	COG1131	(ABC) transporter
BAMF_2829	COG1725	Transcriptional regulator
BAMF_2831	COG1242	4 iron, 4 sulfur cluster binding
BAMF_2832	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
BAMF_2834	COG2267	carboxylic ester hydrolase activity
BAMF_2835	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
BAMF_2836	COG1113	amino acid transport
BAMF_2837	COG0367	asparagine synthase
BAMF_2841	COG1506	peptidase
BAMF_2842	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
BAMF_2843	COG1116	anion transmembrane transporter activity
BAMF_2844	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BAMF_2845	COG0494	nUDIX hydrolase
BAMF_2846	COG4824	toxin secretion phage lysis holin
BAMF_2847	COG0783	Belongs to the Dps family
BAMF_2852	COG0288	reversible hydration of carbon dioxide
BAMF_2854	COG1271	oxidase subunit
BAMF_2855	COG1294	oxidase, subunit
BAMF_2858	COG4948	Mandelate Racemase Muconate Lactonizing
BAMF_2860	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
BAMF_2861	COG0596	Alpha beta hydrolase
BAMF_2863	COG1169	isochorismate synthase
BAMF_2864	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
BAMF_2865	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
BAMF_2866	COG3859	Proton-coupled thiamine transporter YuaJ
BAMF_2867	COG2268	Band 7 protein
BAMF_2868	COG1585	Membrane protein implicated in regulation of membrane protease activity
BAMF_2869	COG2318	DinB family
BAMF_2871	COG1454	alcohol dehydrogenase
BAMF_2873	COG1510	regulation of RNA biosynthetic process
BAMF_2875	COG0569	domain protein
BAMF_2876	COG1705	Flagellar rod assembly protein muramidase FlgJ
BAMF_2877	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
BAMF_2877	COG1017	nitric oxide dioxygenase activity
BAMF_2881	COG0457	Tetratricopeptide repeat
BAMF_2889	COG5632	N-Acetylmuramoyl-L-alanine amidase
BAMF_2890	COG4824	toxin secretion phage lysis holin
BAMF_2894	COG5434	Belongs to the glycosyl hydrolase 28 family
BAMF_2897	COG5412	phage tail tape measure protein
BAMF_2897	COG3953	SLT domain
BAMF_2915	COG0582	viral genome integration into host DNA
BAMF_2917	COG0628	permease
BAMF_2918	COG0673	inositol 2-dehydrogenase activity
BAMF_2919	COG0693	protein deglycase activity
BAMF_2920	COG0840	transmembrane signaling receptor activity
BAMF_2921	COG0840	transmembrane signaling receptor activity
BAMF_2922	COG0840	transmembrane signaling receptor activity
BAMF_2923	COG0840	transmembrane signaling receptor activity
BAMF_2926	COG2070	2-Nitropropane dioxygenase
BAMF_2927	COG0366	Alpha amylase catalytic
BAMF_2928	COG1253	flavin adenine dinucleotide binding
BAMF_2929	COG2738	Putative neutral zinc metallopeptidase
BAMF_2932	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
BAMF_2936	COG1979	alcohol dehydrogenase
BAMF_2937	COG1979	alcohol dehydrogenase
BAMF_2938	COG2155	Conserved Protein
BAMF_2939	COG1098	S1 RNA binding domain
BAMF_2940	COG0436	Aminotransferase
BAMF_2941	COG1522	sequence-specific DNA binding
BAMF_2942	COG2267	carboxylic ester hydrolase activity
BAMF_2944	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
BAMF_2945	COG2205	protein histidine kinase activity
BAMF_2947	COG5018	Exonuclease
BAMF_2948	COG2814	Major facilitator Superfamily
BAMF_2949	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BAMF_2950	COG3011	Protein conserved in bacteria
BAMF_2952	COG3290	protein histidine kinase activity
BAMF_2953	COG4565	transcriptional regulatory protein
BAMF_2959	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
BAMF_2959	COG2111	Na H antiporter
BAMF_2960	COG2111	Na H antiporter
BAMF_2961	COG1006	Multisubunit Na H antiporter MnhC subunit
BAMF_2962	COG0651	ATP synthesis coupled electron transport
BAMF_2963	COG1863	multisubunit Na H antiporter MnhE subunit
BAMF_2964	COG2212	antiporter activity
BAMF_2965	COG1320	monovalent cation:proton antiporter activity
BAMF_2966	COG2050	protein possibly involved in aromatic compounds catabolism
BAMF_2967	COG2197	response regulator
BAMF_2968	COG4585	Histidine kinase
BAMF_2970	COG0142	geranyltranstransferase activity
BAMF_2973	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
BAMF_2974	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
BAMF_2975	COG1335	isochorismatase
BAMF_2976	COG5506	Protein of unknown function (DUF1694)
BAMF_2979	COG0628	permease
BAMF_2980	COG1418	mRNA catabolic process
BAMF_2981	COG1028	Short-chain dehydrogenase reductase Sdr
BAMF_2983	COG1511	domain protein
BAMF_2984	COG1674	ftsk spoiiie
BAMF_2984	COG0433	COG0433 Predicted ATPase
BAMF_2985	COG4499	WXG100 protein secretion system (Wss), protein YukC
BAMF_2986	COG5417	Belongs to the EsaB family
BAMF_2987	COG4842	Belongs to the WXG100 family
BAMF_2988	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
BAMF_2988	COG2508	Transcriptional regulator
BAMF_2989	COG0686	Belongs to the AlaDH PNT family
BAMF_2990	COG5634	Uncharacterized conserved protein (DUF2278)
BAMF_2991	COG3251	PFAM MbtH domain protein
BAMF_2992	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BAMF_2993	COG1535	isochorismatase
BAMF_2993	COG3433	isochorismatase activity
BAMF_2994	COG1021	2,3-dihydroxybenzoate-AMP ligase
BAMF_2995	COG1169	isochorismate synthase
BAMF_2996	COG1028	Short-chain dehydrogenase reductase Sdr
BAMF_2997	COG2819	hydrolase of the alpha beta superfamily
BAMF_2998	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
BAMF_2999	COG1268	BioY protein
BAMF_3000	COG2056	Na+-H+ antiporter family
BAMF_3002	COG1963	PFAM Acid phosphatase vanadium-dependent haloperoxidase related
BAMF_3003	COG3584	3D domain protein
BAMF_3006	COG1252	NADH dehydrogenase
BAMF_3012	COG1131	(ABC) transporter
BAMF_3016	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BAMF_3017	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BAMF_3018	COG3967	Belongs to the short-chain dehydrogenases reductases (SDR) family
BAMF_3019	COG0316	Belongs to the HesB IscA family
BAMF_3021	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
BAMF_3023	COG1252	NADH dehydrogenase
BAMF_3024	COG4837	Protein of unknown function (DUF1462)
BAMF_3025	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
BAMF_3026	COG4946	Tricorn protease homolog
BAMF_3026	COG1506	peptidase
BAMF_3026	COG0823	Involved in the tonB-independent uptake of proteins
BAMF_3027	COG1506	peptidase
BAMF_3027	COG0823	Involved in the tonB-independent uptake of proteins
BAMF_3027	COG4946	Tricorn protease homolog
BAMF_3029	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
BAMF_3030	COG0460	homoserine dehydrogenase
BAMF_3031	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
BAMF_3032	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
BAMF_3033	COG0647	UMP catabolic process
BAMF_3034	COG2445	Protein of unknown function DUF86
BAMF_3035	COG4470	Protein conserved in bacteria
BAMF_3037	COG0739	heme binding
BAMF_3039	COG0737	Belongs to the 5'-nucleotidase family
BAMF_3040	COG0730	response to heat
BAMF_3041	COG1801	Protein of unknown function DUF72
BAMF_3044	COG2508	Transcriptional regulator
BAMF_3046	COG2814	Major facilitator Superfamily
BAMF_3047	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
BAMF_3048	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BAMF_3049	COG2356	endonuclease I
BAMF_3050	COG3842	ATPase activity
BAMF_3051	COG2188	Transcriptional regulator
BAMF_3052	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BAMF_3053	COG0395	ABC-type sugar transport system, permease component
BAMF_3054	COG1175	transmembrane transport
BAMF_3055	COG1653	transport
BAMF_3056	COG2222	sugar isomerase
BAMF_3057	COG0789	Transcriptional regulator
BAMF_3062	COG0322	excinuclease ABC activity
BAMF_3063	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BAMF_3064	COG2226	methyltransferase
BAMF_3066	COG3409	Peptidoglycan-binding domain 1 protein
BAMF_3069	COG3409	Peptidoglycan-binding domain 1 protein
BAMF_3069	COG5632	N-Acetylmuramoyl-L-alanine amidase
BAMF_3070	COG4824	toxin secretion phage lysis holin
BAMF_3074	COG5434	Belongs to the glycosyl hydrolase 28 family
BAMF_3075	COG1705	Flagellar rod assembly protein muramidase FlgJ
BAMF_3077	COG3953	SLT domain
BAMF_3077	COG5412	phage tail tape measure protein
BAMF_3095	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BAMF_3095	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BAMF_3104	COG1396	sequence-specific DNA binding
BAMF_3106	COG0719	Fe-S assembly protein
BAMF_3107	COG0822	iron-sulfur transferase activity
BAMF_3108	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
BAMF_3109	COG0719	Fe-S assembly protein
BAMF_3110	COG0396	ATPase activity
BAMF_3112	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
BAMF_3113	COG1464	Belongs to the NlpA lipoprotein family
BAMF_3114	COG2011	ABC-type metal ion transport system permease component
BAMF_3115	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
BAMF_3117	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BAMF_3118	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
BAMF_3121	COG1393	Belongs to the ArsC family
BAMF_3122	COG1960	acyl-CoA dehydrogenase activity
BAMF_3123	COG0183	Belongs to the thiolase family
BAMF_3124	COG1250	3-hydroxyacyl-CoA dehydrogenase
BAMF_3124	COG1024	Enoyl-CoA hydratase
BAMF_3128	COG5577	PFAM Coat F domain
BAMF_3129	COG1846	Transcriptional regulator
BAMF_3130	COG0477	Major facilitator Superfamily
BAMF_3134	COG1120	ATPase activity
BAMF_3137	COG1028	Short-chain dehydrogenase reductase Sdr
BAMF_3138	COG0783	Belongs to the Dps family
BAMF_3139	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BAMF_3140	COG0745	RESPONSE REGULATOR receiver
BAMF_3141	COG2205	protein histidine kinase activity
BAMF_3141	COG2770	Histidine kinase
BAMF_3143	COG1309	transcriptional regulator
BAMF_3144	COG0114	fumarate hydratase activity
BAMF_3146	COG0697	spore germination
BAMF_3147	COG0814	amino acid
BAMF_3149	COG2197	response regulator
BAMF_3150	COG4585	Histidine kinase
BAMF_3151	COG4758	membrane
BAMF_3152	COG3595	metallopeptidase activity
BAMF_3153	COG1842	Phage shock protein A
BAMF_3154	COG4758	membrane
BAMF_3155	COG2814	Major facilitator Superfamily
BAMF_3156	COG2096	Adenosyltransferase
BAMF_3157	COG1120	ATPase activity
BAMF_3158	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BAMF_3159	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
BAMF_3160	COG1028	Short-chain dehydrogenase reductase Sdr
BAMF_3161	COG3386	PFAM SMP-30 Gluconolaconase
BAMF_3162	COG2205	protein histidine kinase activity
BAMF_3163	COG0745	RESPONSE REGULATOR receiver
BAMF_3165	COG1191	sigma factor activity
BAMF_3167	COG2140	Oxalate decarboxylase
BAMF_3169	COG1120	ATPase activity
BAMF_3170	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BAMF_3171	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BAMF_3172	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
BAMF_3173	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
BAMF_3174	COG0531	amino acid
BAMF_3176	COG1988	membrane-bound metal-dependent
BAMF_3177	COG1368	sulfuric ester hydrolase activity
BAMF_3178	COG1368	sulfuric ester hydrolase activity
BAMF_3179	COG1910	domain protein
BAMF_3180	COG0725	ABC transporter, periplasmic molybdate-binding protein
BAMF_3181	COG4149	molybdate abc transporter
BAMF_3182	COG2197	response regulator
BAMF_3184	COG1131	(ABC) transporter
BAMF_3186	COG0842	Transport permease protein
BAMF_3187	COG0656	L-ascorbic acid biosynthetic process
BAMF_3191	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
BAMF_3192	COG3973	AAA domain
BAMF_3193	COG2860	membrane
BAMF_3195	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
BAMF_3196	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BAMF_3197	COG2217	Heavy metal translocating P-type atpase
BAMF_3198	COG2217	Heavy metal translocating P-type atpase
BAMF_3199	COG2608	mercury ion transmembrane transporter activity
BAMF_3200	COG1937	Protein conserved in bacteria
BAMF_3201	COG0673	inositol 2-dehydrogenase activity
BAMF_3203	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BAMF_3204	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
BAMF_3205	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BAMF_3206	COG1126	abc transporter atp-binding protein
BAMF_3207	COG0765	amino acid transport
BAMF_3208	COG0765	amino acid transport
BAMF_3209	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BAMF_3210	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BAMF_3211	COG0454	-acetyltransferase
BAMF_3212	COG0583	DNA-binding transcription factor activity
BAMF_3213	COG1028	Short-chain dehydrogenase reductase Sdr
BAMF_3214	COG2732	(Barnase) inhibitor
BAMF_3216	COG0557	exoribonuclease II activity
BAMF_3217	COG1647	Serine aminopeptidase, S33
BAMF_3218	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
BAMF_3219	COG1476	TRANSCRIPTIONal
BAMF_3220	COG1396	sequence-specific DNA binding
BAMF_3221	COG1396	sequence-specific DNA binding
BAMF_3222	COG1733	regulation of RNA biosynthetic process
BAMF_3228	COG1174	glycine betaine transport
BAMF_3229	COG1732	Glycine betaine
BAMF_3230	COG1174	glycine betaine transport
BAMF_3231	COG0517	IMP dehydrogenase activity
BAMF_3231	COG1125	glycine betaine transport
BAMF_3232	COG1510	regulation of RNA biosynthetic process
BAMF_3233	COG1174	glycine betaine transport
BAMF_3234	COG1732	Glycine betaine
BAMF_3235	COG1174	glycine betaine transport
BAMF_3236	COG1125	glycine betaine transport
BAMF_3236	COG0517	IMP dehydrogenase activity
BAMF_3237	COG1510	regulation of RNA biosynthetic process
BAMF_3238	COG2095	MarC family integral membrane protein
BAMF_3239	COG3064	Membrane
BAMF_3240	COG4640	response to antibiotic
BAMF_3241	COG0456	acetyltransferase
BAMF_3244	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
BAMF_3248	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BAMF_3249	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
BAMF_3251	COG2234	aminopeptidase activity
BAMF_3255	COG0126	phosphoglycerate kinase activity
BAMF_3256	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
BAMF_3257	COG2390	Transcriptional regulator
BAMF_3258	COG2814	Major facilitator Superfamily
BAMF_3259	COG1609	Transcriptional regulator
BAMF_3260	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BAMF_3261	COG0583	DNA-binding transcription factor activity
BAMF_3262	COG0697	spore germination
BAMF_3263	COG1113	amino acid transport
BAMF_3264	COG1737	Transcriptional regulator
BAMF_3265	COG1070	Carbohydrate kinase
BAMF_3270	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BAMF_3271	COG2186	Transcriptional regulator
BAMF_3272	COG1620	l-lactate permease
BAMF_3273	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
BAMF_3275	COG5039	Polysaccharide pyruvyl transferase
BAMF_3276	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
BAMF_3277	COG0110	maltose O-acetyltransferase activity
BAMF_3278	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
BAMF_3279	COG2244	polysaccharide biosynthetic process
BAMF_3280	COG1216	Glycosyl transferase, family 2
BAMF_3281	COG5039	Polysaccharide pyruvyl transferase
BAMF_3282	COG1216	Glycosyl transferase, family 2
BAMF_3284	COG0438	transferase activity, transferring glycosyl groups
BAMF_3285	COG1215	transferase activity, transferring glycosyl groups
BAMF_3286	COG0438	transferase activity, transferring glycosyl groups
BAMF_3287	COG1086	Polysaccharide biosynthesis protein
BAMF_3288	COG0489	protein tyrosine kinase activity
BAMF_3289	COG3944	biosynthesis protein
BAMF_3290	COG1396	sequence-specific DNA binding
BAMF_3291	COG2272	Belongs to the type-B carboxylesterase lipase family
BAMF_3293	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
BAMF_3296	COG2364	Membrane
BAMF_3297	COG0456	acetyltransferase
BAMF_3298	COG3479	Phenolic acid decarboxylase
BAMF_3306	COG2223	nitrite transmembrane transporter activity
BAMF_3307	COG1609	Transcriptional regulator
BAMF_3309	COG0583	DNA-binding transcription factor activity
BAMF_3310	COG2828	Protein conserved in bacteria
BAMF_3311	COG0477	Major facilitator Superfamily
BAMF_3311	COG2814	Major facilitator Superfamily
BAMF_3313	COG1611	Belongs to the LOG family
BAMF_3314	COG1694	Mazg nucleotide pyrophosphohydrolase
BAMF_3315	COG0659	secondary active sulfate transmembrane transporter activity
BAMF_3316	COG0288	reversible hydration of carbon dioxide
BAMF_3318	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BAMF_3319	COG4290	ribonuclease
BAMF_3320	COG2162	N-hydroxyarylamine O-acetyltransferase activity
BAMF_3321	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
BAMF_3323	COG0391	Required for morphogenesis under gluconeogenic growth conditions
BAMF_3325	COG1051	belongs to the nudix hydrolase family
BAMF_3326	COG0492	ferredoxin-NADP+ reductase activity
BAMF_3327	COG3883	PFAM NLP P60 protein
BAMF_3327	COG0791	NLP P60 protein
BAMF_3328	COG0457	Tetratricopeptide repeat
BAMF_3329	COG5002	protein histidine kinase activity
BAMF_3330	COG0745	RESPONSE REGULATOR receiver
BAMF_3331	COG1132	(ABC) transporter
BAMF_3332	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
BAMF_3332	COG0140	phosphoribosyl-ATP diphosphatase activity
BAMF_3337	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
BAMF_3340	COG4990	cell redox homeostasis
BAMF_3341	COG0110	maltose O-acetyltransferase activity
BAMF_3345	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
BAMF_3348	COG1309	transcriptional regulator
BAMF_3349	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
BAMF_3350	COG1950	PFAM Membrane protein of
BAMF_3351	COG1983	PspC domain protein
BAMF_3352	COG3595	metallopeptidase activity
BAMF_3355	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
BAMF_3357	COG4897	Protein conserved in bacteria
BAMF_3358	COG0574	Belongs to the PEP-utilizing enzyme family
BAMF_3358	COG3848	Pyruvate phosphate dikinase
BAMF_3359	COG1309	transcriptional regulator
BAMF_3360	COG2814	Major facilitator Superfamily
BAMF_3362	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BAMF_3364	COG3409	Peptidoglycan-binding domain 1 protein
BAMF_3364	COG0793	Belongs to the peptidase S41A family
BAMF_3365	COG3420	alginic acid biosynthetic process
BAMF_3366	COG2177	Part of the ABC transporter FtsEX involved in
BAMF_3367	COG2884	Cell division ATP-binding protein ftsE
BAMF_3368	COG2010	Cytochrome c
BAMF_3369	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BAMF_3370	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
BAMF_3372	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
BAMF_3375	COG1516	flagellar protein fliS
BAMF_3376	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
BAMF_3377	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BAMF_3381	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BAMF_3382	COG4786	Flagellar basal body rod
BAMF_3382	COG1256	bacterial-type flagellum assembly
BAMF_3383	COG3418	PFAM FlgN family protein
BAMF_3384	COG2747	anti-sigma28 factor FlgM
BAMF_3386	COG1040	competence protein
BAMF_3388	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
BAMF_3389	COG1307	EDD domain protein, DegV family
BAMF_3390	COG2197	response regulator
BAMF_3391	COG4585	Histidine kinase
BAMF_3392	COG1739	Uncharacterized protein family UPF0029
BAMF_3393	COG1316	TRANSCRIPTIONal
BAMF_3394	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BAMF_3395	COG0438	transferase activity, transferring glycosyl groups
BAMF_3396	COG1215	transferase activity, transferring glycosyl groups
BAMF_3397	COG3206	protein involved in exopolysaccharide biosynthesis
BAMF_3398	COG3307	-O-antigen
BAMF_3399	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
BAMF_3400	COG0297	glycogen (starch) synthase activity
BAMF_3400	COG0438	transferase activity, transferring glycosyl groups
BAMF_3401	COG2244	polysaccharide biosynthetic process
BAMF_3403	COG2247	cell wall binding repeat
BAMF_3403	COG0860	N-Acetylmuramoyl-L-alanine amidase
BAMF_3404	COG2247	cell wall binding repeat
BAMF_3404	COG2385	sporulation resulting in formation of a cellular spore
BAMF_3406	COG1316	TRANSCRIPTIONal
BAMF_3407	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
BAMF_3408	COG1210	Utp--glucose-1-phosphate uridylyltransferase
BAMF_3409	COG1134	teichoic acid transport
BAMF_3410	COG1682	transport, permease protein
BAMF_3411	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
BAMF_3412	COG0438	transferase activity, transferring glycosyl groups
BAMF_3413	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
BAMF_3414	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
BAMF_3415	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
BAMF_3416	COG4193	domain, Protein
BAMF_3417	COG1482	cell wall glycoprotein biosynthetic process
BAMF_3418	COG0697	spore germination
BAMF_3419	COG0814	amino acid
BAMF_3421	COG1215	transferase activity, transferring glycosyl groups
BAMF_3422	COG2814	Major facilitator Superfamily
BAMF_3423	COG1316	TRANSCRIPTIONal
BAMF_3424	COG0561	phosphatase activity
BAMF_3425	COG2433	Pfam Transposase IS66
BAMF_3426	COG0791	NLP P60 protein
BAMF_3428	COG2843	Capsule synthesis protein
BAMF_3430	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
BAMF_3432	COG0697	spore germination
BAMF_3433	COG0814	amino acid
BAMF_3436	COG1609	Transcriptional regulator
BAMF_3437	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BAMF_3439	COG1129	ABC transporter
BAMF_3440	COG1172	Belongs to the binding-protein-dependent transport system permease family
BAMF_3441	COG1879	ABC-type sugar transport system periplasmic component
BAMF_3442	COG3103	Sh3 type 3 domain protein
BAMF_3443	COG2249	NAD(P)H dehydrogenase (quinone) activity
BAMF_3444	COG3527	Alpha-acetolactate decarboxylase
BAMF_3445	COG0028	Belongs to the TPP enzyme family
BAMF_3446	COG0583	DNA-binding transcription factor activity
BAMF_3447	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
BAMF_3450	COG5337	Spore coat protein CotH
BAMF_3452	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
BAMF_3454	COG0405	Gamma-glutamyltransferase
BAMF_3455	COG1522	sequence-specific DNA binding
BAMF_3456	COG2059	Chromate
BAMF_3457	COG2059	Chromate
BAMF_3463	COG5444	nuclease activity
BAMF_3466	COG3878	Protein conserved in bacteria
BAMF_3467	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
BAMF_3468	COG4464	protein tyrosine phosphatase activity
BAMF_3469	COG0489	protein tyrosine kinase activity
BAMF_3470	COG3944	biosynthesis protein
BAMF_3472	COG4715	Zinc finger, swim domain protein
BAMF_3473	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
BAMF_3474	COG0561	phosphatase activity
BAMF_3475	COG1349	DNA-binding transcription factor activity
BAMF_3476	COG0629	single-stranded DNA binding
BAMF_3481	COG0457	Tetratricopeptide repeat
BAMF_3482	COG4786	Flagellar basal body rod
BAMF_3483	COG4786	Flagellar basal body rod
BAMF_3484	COG1077	Cell shape determining protein MreB Mrl
BAMF_3485	COG1609	Transcriptional regulator
BAMF_3486	COG1846	Transcriptional regulator
BAMF_3487	COG2814	Major facilitator Superfamily
BAMF_3488	COG1953	Uracil, thiamine, allantoin
BAMF_3489	COG0477	Major facilitator Superfamily
BAMF_3490	COG1335	isochorismatase
BAMF_3491	COG0004	ammonium transporteR
BAMF_3492	COG0347	Belongs to the P(II) protein family
BAMF_3493	COG0772	Belongs to the SEDS family
BAMF_3494	COG0671	phosphoesterase, PA-phosphatase related
BAMF_3496	COG0739	heme binding
BAMF_3497	COG1247	-acetyltransferase
BAMF_3500	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BAMF_3502	COG2910	NAD(P)H-binding
BAMF_3503	COG1959	2 iron, 2 sulfur cluster binding
BAMF_3506	COG0831	urea catabolic process
BAMF_3507	COG3237	CsbD-like
BAMF_3509	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
BAMF_3510	COG2304	oxidoreductase activity
BAMF_3511	COG2304	oxidoreductase activity
BAMF_3512	COG2385	sporulation resulting in formation of a cellular spore
BAMF_3513	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
BAMF_3515	COG4836	Membrane
BAMF_3523	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
BAMF_3529	COG0698	ribose 5-phosphate isomerase
BAMF_3530	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
BAMF_3532	COG0009	L-threonylcarbamoyladenylate synthase
BAMF_3533	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
BAMF_3537	COG2890	protein-(glutamine-N5) methyltransferase activity
BAMF_3538	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
BAMF_3539	COG0346	lactoylglutathione lyase activity
BAMF_3540	COG0789	Transcriptional regulator
BAMF_3541	COG0679	Auxin Efflux Carrier
BAMF_3542	COG0281	malic enzyme
BAMF_3544	COG0254	rRNA binding
BAMF_3545	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
BAMF_3546	COG1494	fructose-1,6-bisphosphatase
BAMF_3547	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
BAMF_3549	COG0191	fructose-bisphosphate aldolase activity
BAMF_3550	COG2204	response regulator
BAMF_3551	COG4821	SIS domain
BAMF_3554	COG2181	nitrate reductase activity
BAMF_3554	COG0247	lactate metabolic process
BAMF_3555	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BAMF_3558	COG1132	(ABC) transporter
BAMF_3559	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BAMF_3560	COG2181	nitrate reductase activity
BAMF_3561	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
BAMF_3562	COG1140	nitrate reductase beta subunit
BAMF_3563	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
BAMF_3564	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BAMF_3566	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BAMF_3567	COG2223	nitrite transmembrane transporter activity
BAMF_3569	COG4506	Protein conserved in bacteria
BAMF_3571	COG3391	amine dehydrogenase activity
BAMF_3572	COG3391	amine dehydrogenase activity
BAMF_3573	COG0457	Tetratricopeptide repeat
BAMF_3574	COG0010	Belongs to the arginase family
BAMF_3575	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
BAMF_3576	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BAMF_3579	COG1994	Peptidase M50
BAMF_3580	COG1942	4-Oxalocrotonate Tautomerase
BAMF_3581	COG1846	Transcriptional regulator
BAMF_3582	COG0531	amino acid
BAMF_3583	COG3465	dGTPase activity
BAMF_3584	COG1078	dGTPase activity
BAMF_3587	COG1695	Transcriptional regulator
BAMF_3589	COG1131	(ABC) transporter
BAMF_3590	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
BAMF_3596	COG0583	DNA-binding transcription factor activity
BAMF_3597	COG2855	membrane
BAMF_3598	COG0280	phosphate acetyltransferase
BAMF_3601	COG1028	Short-chain dehydrogenase reductase Sdr
BAMF_3602	COG0436	Aminotransferase
BAMF_3604	COG0151	Belongs to the GarS family
BAMF_3606	COG1917	Cupin 2, conserved barrel domain protein
BAMF_3607	COG0077	Prephenate dehydratase
BAMF_3608	COG2814	Major facilitator Superfamily
BAMF_3609	COG2814	Major facilitator Superfamily
BAMF_3610	COG0833	amino acid
BAMF_3611	COG4187	Peptidase family M20/M25/M40
BAMF_3612	COG1012	belongs to the aldehyde dehydrogenase family
BAMF_3614	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
BAMF_3616	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
BAMF_3617	COG1091	dTDP-4-dehydrorhamnose reductase activity
BAMF_3618	COG1088	dTDP-glucose 4,6-dehydratase activity
BAMF_3619	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
BAMF_3620	COG3980	spore coat polysaccharide biosynthesis protein
BAMF_3621	COG1861	Spore coat polysaccharide biosynthesis protein F CMP-KDO synthetase
BAMF_3622	COG2089	acid synthase
BAMF_3623	COG0456	acetyltransferase
BAMF_3624	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
BAMF_3625	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
BAMF_3626	COG0463	Glycosyl transferase, family 2
BAMF_3628	COG2363	Small membrane protein
BAMF_3629	COG2233	PERMEase
BAMF_3632	COG1216	Glycosyl transferase, family 2
BAMF_3634	COG0351	phosphomethylpyrimidine kinase
BAMF_3636	COG1621	beta-fructofuranosidase activity
BAMF_3637	COG1263	PTS System
BAMF_3637	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BAMF_3638	COG3711	transcriptional antiterminator
BAMF_3640	COG1404	Belongs to the peptidase S8 family
BAMF_3641	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BAMF_3642	COG2378	regulation of single-species biofilm formation
BAMF_3646	COG0778	Nitroreductase
BAMF_3647	COG0772	Belongs to the SEDS family
BAMF_3648	COG0454	-acetyltransferase
BAMF_3652	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
BAMF_3653	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
BAMF_3654	COG2261	transglycosylase associated protein
BAMF_3655	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
BAMF_3656	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
BAMF_3657	COG2246	polysaccharide biosynthetic process
BAMF_3658	COG1309	transcriptional regulator
BAMF_3662	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
BAMF_3663	COG2837	iron assimilation
BAMF_3664	COG2822	iron ion transport
BAMF_3665	COG0672	)-iron permease
BAMF_3668	COG0583	DNA-binding transcription factor activity
BAMF_3670	COG1346	cytolysis
BAMF_3671	COG4895	conserved protein (DUF2196)
BAMF_3672	COG0789	Transcriptional regulator
BAMF_3673	COG5504	Zn-dependent protease
BAMF_3674	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
BAMF_3675	COG0346	lactoylglutathione lyase activity
BAMF_3676	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BAMF_3677	COG1404	Belongs to the peptidase S8 family
BAMF_3678	COG1442	glycosyl transferase family 8
BAMF_3679	COG2357	RelA SpoT domain protein
BAMF_3680	COG1575	Belongs to the MenA family. Type 1 subfamily
BAMF_3683	COG1696	Membrane protein involved in D-alanine export
BAMF_3685	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
BAMF_3686	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
BAMF_3687	COG1486	melibiose metabolic process
BAMF_3688	COG1447	Phosphotransferase system cellobiose-specific component IIA
BAMF_3689	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BAMF_3690	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BAMF_3691	COG3711	transcriptional antiterminator
BAMF_3691	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BAMF_3694	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BAMF_3695	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BAMF_3697	COG0640	Transcriptional regulator
BAMF_3698	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
BAMF_3699	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BAMF_3700	COG1447	Phosphotransferase system cellobiose-specific component IIA
BAMF_3701	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BAMF_3702	COG2723	6-phospho-beta-galactosidase activity
BAMF_3703	COG1940	carbohydrate kinase activity
BAMF_3704	COG1482	cell wall glycoprotein biosynthetic process
BAMF_3706	COG0753	catalase activity
BAMF_3707	COG3049	Linear amide C-N hydrolases, choloylglycine hydrolase family
BAMF_3708	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
BAMF_3709	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
BAMF_3710	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
BAMF_3711	COG4988	ABC transporter
BAMF_3712	COG1294	oxidase, subunit
BAMF_3713	COG1271	oxidase subunit
BAMF_3714	COG3493	citrate carrier protein
BAMF_3715	COG0726	polysaccharide deacetylase
BAMF_3716	COG3842	ATPase activity
BAMF_3717	COG2508	Transcriptional regulator
BAMF_3718	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BAMF_3720	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
BAMF_3723	COG4894	glucomannan catabolic process
BAMF_3724	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
BAMF_3725	COG0500	methyltransferase
BAMF_3726	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
BAMF_3730	COG0693	protein deglycase activity
BAMF_3730	COG0753	catalase activity
BAMF_3731	COG2851	Citrate transporter
BAMF_3732	COG2273	Hydrolase Family 16
BAMF_3733	COG3711	transcriptional antiterminator
BAMF_3734	COG2270	Major facilitator Superfamily
BAMF_3735	COG0513	Belongs to the DEAD box helicase family
BAMF_3746	COG0697	spore germination
BAMF_3747	COG0589	response to stress
BAMF_3748	COG2723	6-phospho-beta-galactosidase activity
BAMF_3749	COG1263	PTS System
BAMF_3749	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BAMF_3749	COG2190	(PTS) system
BAMF_3752	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
BAMF_3756	COG3507	Belongs to the glycosyl hydrolase 43 family
BAMF_3761	COG0010	Belongs to the arginase family
BAMF_3762	COG0833	amino acid
BAMF_3763	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
BAMF_3764	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
BAMF_3766	COG2390	Transcriptional regulator
BAMF_3767	COG0561	phosphatase activity
BAMF_3773	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
BAMF_3774	COG5294	Protein conserved in bacteria
BAMF_3775	COG0577	efflux transmembrane transporter activity
BAMF_3776	COG1136	(ABC) transporter
BAMF_3777	COG2205	protein histidine kinase activity
BAMF_3778	COG0745	RESPONSE REGULATOR receiver
BAMF_3781	COG1082	Xylose isomerase domain protein TIM barrel
BAMF_3783	COG2814	Major facilitator Superfamily
BAMF_3789	COG1349	DNA-binding transcription factor activity
BAMF_3790	COG0667	Aldo Keto reductase
BAMF_3791	COG2814	Major facilitator Superfamily
BAMF_3793	COG1028	Short-chain dehydrogenase reductase Sdr
BAMF_3794	COG2197	response regulator
BAMF_3795	COG4585	Histidine kinase
BAMF_3796	COG3239	Fatty acid desaturase
BAMF_3797	COG1309	transcriptional regulator
BAMF_3798	COG1012	belongs to the aldehyde dehydrogenase family
BAMF_3799	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BAMF_3801	COG0640	Transcriptional regulator
BAMF_3802	COG2814	Major facilitator Superfamily
BAMF_3803	COG1714	RDD family
BAMF_3805	COG0450	alkyl hydroperoxide reductase
BAMF_3806	COG3634	alkyl hydroperoxide reductase activity
BAMF_3808	COG1113	amino acid transport
BAMF_3820	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BAMF_3822	COG2323	membrane
BAMF_3824	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BAMF_3826	COG2080	2 iron, 2 sulfur cluster binding
BAMF_3828	COG1529	Aldehyde oxidase and xanthine dehydrogenase
BAMF_3829	COG2068	MobA-Related Protein
BAMF_3830	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
BAMF_3839	COG3863	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
BAMF_3840	COG0667	Aldo Keto reductase
BAMF_3841	COG0456	acetyltransferase
BAMF_3842	COG0457	Tetratricopeptide repeat
BAMF_3843	COG0010	Belongs to the arginase family
BAMF_3844	COG0833	amino acid
BAMF_3845	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
BAMF_3846	COG5658	integral membrane protein
BAMF_3847	COG0640	Transcriptional regulator
BAMF_3848	COG3829	transcription factor binding
BAMF_3851	COG3850	Histidine kinase
BAMF_3851	COG5002	protein histidine kinase activity
BAMF_3852	COG0745	RESPONSE REGULATOR receiver
BAMF_3854	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BAMF_3855	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
BAMF_3856	COG4853	Protein conserved in bacteria
BAMF_3857	COG4863	YycH protein
BAMF_3858	COG5002	protein histidine kinase activity
BAMF_3859	COG0745	RESPONSE REGULATOR receiver
BAMF_3861	COG0346	lactoylglutathione lyase activity
BAMF_3862	COG0305	Participates in initiation and elongation during chromosome replication
BAMF_3865	COG3093	addiction module antidote protein HigA
BAMF_3868	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
BAMF_3869	COG0438	transferase activity, transferring glycosyl groups
BAMF_3873	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
BAMF_3874	COG4241	membrane
BAMF_3876	COG5577	PFAM Coat F domain
BAMF_3877	COG1733	regulation of RNA biosynthetic process
BAMF_3879	COG0697	spore germination
BAMF_3880	COG1621	beta-fructofuranosidase activity
BAMF_3881	COG1621	beta-fructofuranosidase activity
BAMF_3883	COG2318	DinB family
BAMF_3884	COG2211	Major facilitator Superfamily
BAMF_3886	COG0778	Nitroreductase
BAMF_3887	COG1846	Transcriptional regulator
BAMF_3888	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BAMF_3889	COG1846	Transcriptional regulator
BAMF_3890	COG2153	protein acetylation
BAMF_3891	COG2267	carboxylic ester hydrolase activity
BAMF_3894	COG1331	Highly conserved protein containing a thioredoxin domain
BAMF_3895	COG1331	Highly conserved protein containing a thioredoxin domain
BAMF_3896	COG1266	CAAX protease self-immunity
BAMF_3897	COG0477	Major facilitator Superfamily
BAMF_3897	COG2814	Major facilitator Superfamily
BAMF_3898	COG0346	lactoylglutathione lyase activity
BAMF_3899	COG1609	Transcriptional regulator
BAMF_3900	COG1609	Transcriptional regulator
BAMF_3901	COG0708	Exodeoxyribonuclease III
BAMF_3902	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
BAMF_3903	COG2169	Transcriptional regulator
BAMF_3905	COG0629	single-stranded DNA binding
BAMF_3907	COG0012	GTP binding
BAMF_3908	COG0243	molybdopterin cofactor binding
BAMF_3909	COG4481	Protein conserved in bacteria
BAMF_3910	COG3949	Membrane
BAMF_3913	COG1475	DNA binding
BAMF_3914	COG1192	Involved in chromosome partitioning
BAMF_3919	COG1847	R3H domain protein
BAMF_3920	COG0706	membrane insertase activity
BAMF_3922	COG0230	Belongs to the bacterial ribosomal protein bL34 family