locus-tag	class	description
J5X95_00110	COG1595	DNA-templated transcription, initiation
J5X95_00140	COG4570	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC
J5X95_00145	COG1484	DNA-dependent DNA replication
J5X95_00150	COG3935	DnaD domain protein
J5X95_00185	COG3645	SOS response
J5X95_00185	COG3646	Phage regulatory protein
J5X95_00200	COG3620	sequence-specific DNA binding
J5X95_00205	COG0582	viral genome integration into host DNA
J5X95_00210	COG2233	PERMEase
J5X95_00220	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
J5X95_00225	COG1199	ATP-dependent helicase activity
J5X95_00240	COG0116	Belongs to the methyltransferase superfamily
J5X95_00270	COG3359	exonuclease
J5X95_00275	COG1205	dead DEAH box helicase
J5X95_00275	COG1111	helicase
J5X95_00280	COG2190	(PTS) system
J5X95_00285	COG0071	Belongs to the small heat shock protein (HSP20) family
J5X95_00325	COG4499	WXG100 protein secretion system (Wss), protein YukC
J5X95_00325	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
J5X95_00335	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
J5X95_00340	COG3935	DnaD domain protein
J5X95_00350	COG0436	Aminotransferase
J5X95_00355	COG5353	protein conserved in bacteria
J5X95_00365	COG1199	ATP-dependent helicase activity
J5X95_00365	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
J5X95_00395	COG0438	transferase activity, transferring glycosyl groups
J5X95_00400	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
J5X95_00415	COG1694	Mazg nucleotide pyrophosphohydrolase
J5X95_00420	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
J5X95_00425	COG2140	Oxalate decarboxylase
J5X95_00435	COG4347	Protein of unknown function (DUF1405)
J5X95_00440	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
J5X95_00440	COG2010	Cytochrome c
J5X95_00445	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
J5X95_00450	COG0723	plastoquinol--plastocyanin reductase activity
J5X95_00465	COG0457	Tetratricopeptide repeat
J5X95_00480	COG0287	Prephenate dehydrogenase
J5X95_00515	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
J5X95_00520	COG4401	Chorismate mutase type I
J5X95_00535	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
J5X95_00540	COG0105	UTP biosynthetic process
J5X95_00545	COG0142	geranyltranstransferase activity
J5X95_00555	COG0142	geranyltranstransferase activity
J5X95_00570	COG0776	regulation of translation
J5X95_00575	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
J5X95_00615	COG0539	negative regulation of cytoplasmic translation
J5X95_00630	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
J5X95_00635	COG2959	enzyme of heme biosynthesis
J5X95_00640	COG3773	Cell wall hydrolase
J5X95_00640	COG3409	Peptidoglycan-binding domain 1 protein
J5X95_00645	COG2339	peptidase activity
J5X95_00650	COG0492	ferredoxin-NADP+ reductase activity
J5X95_00655	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
J5X95_00660	COG4862	establishment of competence for transformation
J5X95_00665	COG1408	metallophosphoesterase
J5X95_00675	COG1388	LysM domain
J5X95_00680	COG1266	CAAX protease self-immunity
J5X95_00685	COG0514	ATP-dependent DNA helicase (RecQ)
J5X95_00690	COG4955	Helix-turn-helix domain
J5X95_00695	COG1141	Ferredoxin
J5X95_00700	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
J5X95_00705	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
J5X95_00715	COG1595	DNA-templated transcription, initiation
J5X95_00720	COG5002	protein histidine kinase activity
J5X95_00725	COG0745	RESPONSE REGULATOR receiver
J5X95_00730	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
J5X95_00735	COG1333	cytochrome c biogenesis protein
J5X95_00740	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
J5X95_00745	COG1187	pseudouridine synthase activity
J5X95_00750	COG0700	Nucleoside recognition
J5X95_00755	COG2715	membrane protein required for spore maturation
J5X95_00760	COG1686	Belongs to the peptidase S11 family
J5X95_00785	COG1547	Domain of unknown function (DUF309)
J5X95_00790	COG0456	acetyltransferase
J5X95_00805	COG0307	riboflavin synthase, alpha
J5X95_00810	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
J5X95_00810	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
J5X95_00820	COG0681	Belongs to the peptidase S26 family
J5X95_00830	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
J5X95_00835	COG4086	secreted protein
J5X95_00840	COG0019	diaminopimelate decarboxylase activity
J5X95_00845	COG0697	spore germination
J5X95_00860	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
J5X95_00880	COG1191	sigma factor activity
J5X95_00890	COG1366	Belongs to the anti-sigma-factor antagonist family
J5X95_00895	COG1686	Belongs to the peptidase S11 family
J5X95_00900	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
J5X95_00905	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
J5X95_00910	COG4974	Belongs to the 'phage' integrase family
J5X95_00920	COG0735	belongs to the Fur family
J5X95_00925	COG1300	Membrane
J5X95_00940	COG0281	malic enzyme
J5X95_00945	COG1757	Na H antiporter
J5X95_00950	COG1027	Aspartate ammonia-lyase
J5X95_00955	COG0252	asparaginase activity
J5X95_00960	COG1396	sequence-specific DNA binding
J5X95_00965	COG1379	DNA repair
J5X95_00970	COG0494	nUDIX hydrolase
J5X95_00980	COG0667	Aldo Keto reductase
J5X95_00990	COG1073	alpha beta
J5X95_01000	COG4918	Iron-sulphur cluster biosynthesis
J5X95_01005	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
J5X95_01005	COG0456	acetyltransferase
J5X95_01010	COG2329	Antibiotic biosynthesis monooxygenase
J5X95_01015	COG0456	acetyltransferase
J5X95_01020	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
J5X95_01035	COG0628	permease
J5X95_01045	COG0346	lactoylglutathione lyase activity
J5X95_01055	COG3048	D-serine ammonia-lyase activity
J5X95_01060	COG0300	oxidoreductase activity
J5X95_01065	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
J5X95_01070	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
J5X95_01075	COG1024	Enoyl-CoA hydratase
J5X95_01080	COG3425	synthase
J5X95_01085	COG2124	cytochrome p450
J5X95_01090	COG3321	synthase
J5X95_01090	COG1028	Short-chain dehydrogenase reductase Sdr
J5X95_01090	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J5X95_01090	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J5X95_01090	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J5X95_01095	COG3321	synthase
J5X95_01095	COG1028	Short-chain dehydrogenase reductase Sdr
J5X95_01095	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J5X95_01095	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J5X95_01095	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J5X95_01100	COG1028	Short-chain dehydrogenase reductase Sdr
J5X95_01100	COG0318	PFAM AMP-dependent synthetase and ligase
J5X95_01100	COG0300	oxidoreductase activity
J5X95_01100	COG3321	synthase
J5X95_01100	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J5X95_01105	COG0300	oxidoreductase activity
J5X95_01105	COG0318	PFAM AMP-dependent synthetase and ligase
J5X95_01105	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J5X95_01105	COG1028	Short-chain dehydrogenase reductase Sdr
J5X95_01105	COG3321	synthase
J5X95_01110	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J5X95_01110	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J5X95_01110	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J5X95_01110	COG3321	synthase
J5X95_01110	COG1028	Short-chain dehydrogenase reductase Sdr
J5X95_01115	COG1028	Short-chain dehydrogenase reductase Sdr
J5X95_01115	COG3321	synthase
J5X95_01115	COG0300	oxidoreductase activity
J5X95_01115	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J5X95_01115	COG0318	PFAM AMP-dependent synthetase and ligase
J5X95_01120	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J5X95_01120	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J5X95_01120	COG3321	synthase
J5X95_01120	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J5X95_01120	COG1028	Short-chain dehydrogenase reductase Sdr
J5X95_01125	COG1028	Short-chain dehydrogenase reductase Sdr
J5X95_01130	COG0318	PFAM AMP-dependent synthetase and ligase
J5X95_01145	COG2070	2-Nitropropane dioxygenase
J5X95_01145	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
J5X95_01150	COG0250	Participates in transcription elongation, termination and antitermination
J5X95_01170	COG0596	Alpha beta hydrolase
J5X95_01185	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
J5X95_01190	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
J5X95_01205	COG0706	membrane insertase activity
J5X95_01210	COG2195	Cleaves the N-terminal amino acid of tripeptides
J5X95_01215	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
J5X95_01220	COG0346	lactoylglutathione lyase activity
J5X95_01230	COG1376	ErfK ybiS ycfS ynhG family protein
J5X95_01235	COG4129	membrane
J5X95_01240	COG1126	abc transporter atp-binding protein
J5X95_01245	COG0765	amino acid transport
J5X95_01250	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J5X95_01260	COG1597	lipid kinase activity
J5X95_01265	COG0508	dehydrogenase complex catalyzes the overall conversion of
J5X95_01270	COG0022	dehydrogenase e1 component
J5X95_01275	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
J5X95_01280	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
J5X95_01285	COG3426	butyrate kinase activity
J5X95_01290	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
J5X95_01295	COG0280	phosphate acetyltransferase
J5X95_01300	COG3290	protein histidine kinase activity
J5X95_01300	COG3829	transcription factor binding
J5X95_01310	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
J5X95_01315	COG2079	MmgE PrpD family protein
J5X95_01320	COG0372	Belongs to the citrate synthase family
J5X95_01325	COG1960	acyl-CoA dehydrogenase activity
J5X95_01330	COG1250	3-hydroxyacyl-CoA dehydrogenase
J5X95_01335	COG0183	Belongs to the thiolase family
J5X95_01340	COG0584	glycerophosphoryl diester phosphodiesterase
J5X95_01345	COG0860	N-Acetylmuramoyl-L-alanine amidase
J5X95_01370	COG1902	pentaerythritol trinitrate reductase activity
J5X95_01385	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
J5X95_01390	COG0745	RESPONSE REGULATOR receiver
J5X95_01395	COG0750	zinc metalloprotease
J5X95_01400	COG0497	DNA recombination
J5X95_01410	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
J5X95_01420	COG0142	geranyltranstransferase activity
J5X95_01430	COG1570	exodeoxyribonuclease VII activity
J5X95_01445	COG1302	Protein conserved in bacteria
J5X95_01450	COG0439	Biotin carboxylase
J5X95_01455	COG0511	ligase activity, forming carbon-carbon bonds
J5X95_01495	COG3854	ATPases associated with a variety of cellular activities
J5X95_01510	COG0006	proline dipeptidase activity
J5X95_01520	COG3872	metal-dependent enzyme
J5X95_01530	COG1752	Esterase of the alpha-beta hydrolase superfamily
J5X95_01545	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
J5X95_01565	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
J5X95_01580	COG1396	sequence-specific DNA binding
J5X95_01590	COG0681	Belongs to the peptidase S26 family
J5X95_01615	COG4940	Competence protein ComGF
J5X95_01625	COG4970	Tfp pilus assembly protein FimT
J5X95_01630	COG4537	Required for transformation and DNA binding
J5X95_01635	COG1459	type II secretion system
J5X95_01640	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
J5X95_01645	COG0598	Magnesium transport protein CorA
J5X95_01650	COG1253	flavin adenine dinucleotide binding
J5X95_01655	COG1366	Belongs to the anti-sigma-factor antagonist family
J5X95_01665	COG1393	Belongs to the ArsC family
J5X95_01675	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
J5X95_01685	COG0011	TIGRFAM Protein of
J5X95_01695	COG2866	Carboxypeptidase
J5X95_01700	COG1940	carbohydrate kinase activity
J5X95_01705	COG4483	Protein conserved in bacteria
J5X95_01710	COG1757	Na H antiporter
J5X95_01720	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
J5X95_01735	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
J5X95_01740	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
J5X95_01745	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
J5X95_01750	COG0581	inorganic phosphate transmembrane transporter activity
J5X95_01755	COG0573	inorganic phosphate transmembrane transporter activity
J5X95_01760	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
J5X95_01765	COG0768	penicillin binding
J5X95_01770	COG0477	Major facilitator Superfamily
J5X95_01775	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
J5X95_01780	COG2839	Protein conserved in bacteria
J5X95_01785	COG5521	maltodextrose utilization protein MalA
J5X95_01790	COG1388	LysM domain
J5X95_01800	COG4709	membrane
J5X95_01805	COG5663	Belongs to the 5'(3')-deoxyribonucleotidase family
J5X95_01810	COG0735	belongs to the Fur family
J5X95_01815	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
J5X95_01830	COG0513	Belongs to the DEAD box helicase family
J5X95_01845	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
J5X95_01850	COG2384	SAM-dependent methyltransferase
J5X95_01855	COG2010	Cytochrome c
J5X95_01860	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
J5X95_01865	COG0358	DNA primase activity
J5X95_01880	COG0517	IMP dehydrogenase activity
J5X95_01885	COG0751	glycine-tRNA ligase activity
J5X95_01905	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
J5X95_01910	COG0295	cytidine deaminase activity
J5X95_01915	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
J5X95_01925	COG1480	7TM receptor with intracellular HD hydrolase
J5X95_01930	COG1702	phosphate starvation-inducible protein PhoH
J5X95_01935	COG0561	phosphatase activity
J5X95_01950	COG4864	UPF0365 protein
J5X95_01955	COG1030	water channel activity
J5X95_01960	COG1610	YqeY-like protein
J5X95_01970	COG1283	sodium-dependent phosphate transmembrane transporter activity
J5X95_01975	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
J5X95_01980	COG1385	rRNA (uridine-N3-)-methyltransferase activity
J5X95_02010	COG0635	Involved in the biosynthesis of porphyrin-containing compound
J5X95_02025	COG0860	N-Acetylmuramoyl-L-alanine amidase
J5X95_02040	COG1466	dna polymerase III delta subunit
J5X95_02055	COG0658	competence protein
J5X95_02055	COG2333	competence protein COMEC
J5X95_02060	COG2131	deaminase
J5X95_02065	COG1555	photosystem II stabilization
J5X95_02065	COG1596	polysaccharide export
J5X95_02070	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
J5X95_02075	COG2226	methyltransferase
J5X95_02080	COG0799	negative regulation of ribosome biogenesis
J5X95_02085	COG1713	HD superfamily hydrolase involved in NAD metabolism
J5X95_02095	COG1534	Rna-binding protein
J5X95_02100	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
J5X95_02105	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
J5X95_02110	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
J5X95_02120	COG2755	lipolytic protein G-D-S-L family
J5X95_02130	COG0398	Pfam SNARE associated Golgi protein
J5X95_02165	COG5002	protein histidine kinase activity
J5X95_02165	COG0642	Histidine kinase
J5X95_02170	COG0745	RESPONSE REGULATOR receiver
J5X95_02175	COG2311	Membrane
J5X95_02180	COG0454	-acetyltransferase
J5X95_02185	COG0563	adenylate kinase activity
J5X95_02200	COG0456	acetyltransferase
J5X95_02205	COG2318	DinB family
J5X95_02215	COG0561	phosphatase activity
J5X95_02220	COG0561	phosphatase activity
J5X95_02230	COG1482	cell wall glycoprotein biosynthetic process
J5X95_02235	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J5X95_02235	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
J5X95_02235	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J5X95_02240	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
J5X95_02240	COG3711	transcriptional antiterminator
J5X95_02250	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
J5X95_02255	COG0583	DNA-binding transcription factor activity
J5X95_02260	COG2814	Major facilitator Superfamily
J5X95_02265	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
J5X95_02265	COG2124	cytochrome p450
J5X95_02270	COG1309	transcriptional regulator
J5X95_02275	COG2226	methyltransferase
J5X95_02290	COG2116	formate transmembrane transporter activity
J5X95_02295	COG5609	conserved protein (DUF2294)
J5X95_02300	COG3383	formate dehydrogenase (NAD+) activity
J5X95_02305	COG2427	Protein of unknown function (DUF1641)
J5X95_02315	COG0626	cystathionine gamma-synthase activity
J5X95_02320	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
J5X95_02345	COG0768	penicillin binding
J5X95_02360	COG0826	peptidase U32
J5X95_02365	COG0826	peptidase U32
J5X95_02370	COG4122	O-methyltransferase activity
J5X95_02375	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
J5X95_02390	COG4472	Bacterial protein of unknown function (DUF965)
J5X95_02400	COG0628	permease
J5X95_02405	COG1126	abc transporter atp-binding protein
J5X95_02410	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J5X95_02415	COG0765	amino acid transport
J5X95_02420	COG0765	amino acid transport
J5X95_02435	COG3881	PFAM PRC-barrel domain
J5X95_02440	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
J5X95_02445	COG0457	Tetratricopeptide repeat
J5X95_02455	COG1104	cysteine desulfurase activity
J5X95_02460	COG1959	2 iron, 2 sulfur cluster binding
J5X95_02465	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
J5X95_02470	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
J5X95_02495	COG0860	N-Acetylmuramoyl-L-alanine amidase
J5X95_02495	COG4991	sh3 domain protein
J5X95_02495	COG3103	Sh3 type 3 domain protein
J5X95_02505	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
J5X95_02515	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
J5X95_02515	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
J5X95_02520	COG5416	Lipopolysaccharide assembly protein A domain
J5X95_02525	COG0490	domain, Protein
J5X95_02530	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
J5X95_02530	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
J5X95_02540	COG2244	polysaccharide biosynthetic process
J5X95_02545	COG2323	membrane
J5X95_02555	COG1862	Preprotein translocase
J5X95_02600	COG1388	LysM domain
J5X95_02610	COG0157	Belongs to the NadC ModD family
J5X95_02615	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
J5X95_02620	COG1104	cysteine desulfurase activity
J5X95_02625	COG1827	regulation of RNA biosynthetic process
J5X95_02630	COG0077	Prephenate dehydratase
J5X95_02645	COG3290	protein histidine kinase activity
J5X95_02650	COG0211	Belongs to the bacterial ribosomal protein bL27 family
J5X95_02655	COG2868	ribosomal protein
J5X95_02665	COG1994	Peptidase M50
J5X95_02670	COG0739	heme binding
J5X95_02675	COG2894	cell division
J5X95_02685	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
J5X95_02695	COG1077	Cell shape determining protein MreB Mrl
J5X95_02715	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
J5X95_02720	COG0285	dihydrofolate synthase activity
J5X95_02725	COG0525	valine-tRNA ligase activity
J5X95_02735	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
J5X95_02740	COG1388	LysM domain
J5X95_02750	COG0113	porphobilinogen synthase activity
J5X95_02755	COG1587	Uroporphyrinogen-III synthase
J5X95_02765	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
J5X95_02785	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
J5X95_02790	COG0470	DNA polymerase III
J5X95_02790	COG1067	ATP-dependent peptidase activity
J5X95_02805	COG0457	Tetratricopeptide repeat
J5X95_02805	COG1477	protein flavinylation
J5X95_02820	COG0473	3-isopropylmalate dehydrogenase activity
J5X95_02835	COG0440	acetolactate synthase activity
J5X95_02840	COG0028	Belongs to the TPP enzyme family
J5X95_02875	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
J5X95_02890	COG0622	Phosphoesterase
J5X95_02895	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
J5X95_02905	COG5401	PFAM Sporulation and spore germination
J5X95_02915	COG1846	Transcriptional regulator
J5X95_02920	COG2197	response regulator
J5X95_02925	COG0824	Thioesterase
J5X95_02930	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
J5X95_02935	COG1053	succinate dehydrogenase
J5X95_02940	COG2009	succinate dehydrogenase
J5X95_02945	COG1719	4-vinyl reductase, 4VR
J5X95_02950	COG0527	aspartate kinase activity
J5X95_02960	COG3118	belongs to the thioredoxin family
J5X95_02965	COG3534	alpha-L-arabinofuranosidase
J5X95_02970	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
J5X95_02975	COG2086	electron transfer activity
J5X95_02980	COG1024	Enoyl-CoA hydratase
J5X95_02985	COG1309	transcriptional regulator
J5X95_02990	COG0318	PFAM AMP-dependent synthetase and ligase
J5X95_03000	COG3766	membrane
J5X95_03010	COG1796	DNA polymerase
J5X95_03010	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
J5X95_03015	COG1286	toxin biosynthetic process
J5X95_03030	COG0072	phenylalanine-tRNA ligase activity
J5X95_03030	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J5X95_03035	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
J5X95_03040	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
J5X95_03050	COG3835	regulator
J5X95_03055	COG0277	FAD linked oxidase domain protein
J5X95_03060	COG0247	lactate metabolic process
J5X95_03065	COG1966	Carbon starvation protein
J5X95_03070	COG3534	alpha-L-arabinofuranosidase
J5X95_03075	COG0395	ABC-type sugar transport system, permease component
J5X95_03080	COG1175	transmembrane transport
J5X95_03085	COG1653	transport
J5X95_03095	COG0647	UMP catabolic process
J5X95_03100	COG0235	Class ii aldolase
J5X95_03105	COG1069	ribulokinase activity
J5X95_03110	COG2160	L-arabinose isomerase activity
J5X95_03115	COG3507	Belongs to the glycosyl hydrolase 43 family
J5X95_03120	COG1363	Peptidase, m42
J5X95_03130	COG3326	Membrane
J5X95_03145	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
J5X95_03150	COG1346	cytolysis
J5X95_03155	COG1380	Effector of murein hydrolase LrgA
J5X95_03160	COG3279	Response regulator of the LytR AlgR family
J5X95_03165	COG3275	phosphorelay sensor kinase activity
J5X95_03170	COG1011	Hydrolase
J5X95_03185	COG0398	Pfam SNARE associated Golgi protein
J5X95_03190	COG1484	DNA-dependent DNA replication
J5X95_03195	COG3611	Membrane attachment protein
J5X95_03210	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
J5X95_03215	COG1733	regulation of RNA biosynthetic process
J5X95_03220	COG2814	Major facilitator Superfamily
J5X95_03225	COG0656	L-ascorbic acid biosynthetic process
J5X95_03230	COG0237	dephospho-CoA kinase activity
J5X95_03235	COG1971	Probably functions as a manganese efflux pump
J5X95_03240	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
J5X95_03245	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
J5X95_03245	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
J5X95_03250	COG5002	protein histidine kinase activity
J5X95_03255	COG0745	RESPONSE REGULATOR receiver
J5X95_03265	COG0538	isocitrate dehydrogenase activity
J5X95_03270	COG0372	Belongs to the citrate synthase family
J5X95_03280	COG0457	Tetratricopeptide repeat
J5X95_03310	COG0628	permease
J5X95_03315	COG3030	protein affecting phage T7 exclusion by the F plasmid
J5X95_03320	COG0469	pyruvate kinase activity
J5X95_03340	COG0281	malic enzyme
J5X95_03345	COG0587	DNA-directed DNA polymerase activity
J5X95_03365	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
J5X95_03375	COG4109	DRTGG domain
J5X95_03385	COG1028	Short-chain dehydrogenase reductase Sdr
J5X95_03400	COG0521	Mo-molybdopterin cofactor biosynthetic process
J5X95_03410	COG0827	DNA restriction-modification system
J5X95_03415	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
J5X95_03420	COG3874	Sporulation protein YtfJ
J5X95_03430	COG1714	RDD family
J5X95_03435	COG0616	signal peptide processing
J5X95_03440	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
J5X95_03445	COG1574	metal-dependent hydrolase with the TIM-barrel fold
J5X95_03450	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
J5X95_03465	COG1104	cysteine desulfurase activity
J5X95_03470	COG1114	Component of the transport system for branched-chain amino acids
J5X95_03480	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
J5X95_03485	COG1309	transcriptional regulator
J5X95_03490	COG1956	GAF domain-containing protein
J5X95_03495	COG2203	Gaf domain
J5X95_03495	COG2199	diguanylate cyclase activity
J5X95_03505	COG1012	belongs to the aldehyde dehydrogenase family
J5X95_03530	COG0582	viral genome integration into host DNA
J5X95_03535	COG1017	nitric oxide dioxygenase activity
J5X95_03535	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
J5X95_03560	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
J5X95_03565	COG1378	Sugar-specific transcriptional regulator TrmB
J5X95_03585	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
J5X95_03590	COG0454	-acetyltransferase
J5X95_03595	COG0517	IMP dehydrogenase activity
J5X95_03600	COG0123	including yeast histone deacetylase and acetoin utilization protein
J5X95_03605	COG1360	Flagellar Motor Protein
J5X95_03610	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
J5X95_03615	COG1609	Transcriptional regulator
J5X95_03620	COG1605	Chorismate mutase
J5X95_03620	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
J5X95_03625	COG3118	belongs to the thioredoxin family
J5X95_03630	COG4980	gas vesicle protein
J5X95_03635	COG4768	protein containing a divergent version of the methyl-accepting chemotaxis-like domain
J5X95_03645	COG1674	ftsk spoiiie
J5X95_03650	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J5X95_03660	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
J5X95_03670	COG1363	Peptidase, m42
J5X95_03675	COG5584	Small secreted protein
J5X95_03680	COG0281	malic enzyme
J5X95_03685	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
J5X95_03700	COG0510	thiamine kinase activity
J5X95_03705	COG1597	lipid kinase activity
J5X95_03715	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
J5X95_03720	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
J5X95_03725	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
J5X95_03730	COG2252	PERMEase
J5X95_03735	COG4473	ABC transporter
J5X95_03740	COG1131	(ABC) transporter
J5X95_03745	COG1349	DNA-binding transcription factor activity
J5X95_03750	COG1187	pseudouridine synthase activity
J5X95_03755	COG2244	polysaccharide biosynthetic process
J5X95_03760	COG2081	HI0933 family
J5X95_03765	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
J5X95_03775	COG1609	Transcriptional regulator
J5X95_03780	COG1653	transport
J5X95_03785	COG1175	transmembrane transport
J5X95_03790	COG0395	ABC-type sugar transport system, permease component
J5X95_03795	COG1486	melibiose metabolic process
J5X95_03805	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
J5X95_03820	COG2202	Pas domain
J5X95_03820	COG1366	Belongs to the anti-sigma-factor antagonist family
J5X95_03825	COG2814	Major facilitator Superfamily
J5X95_03830	COG5522	Integral membrane protein (intg_mem_TP0381)
J5X95_03835	COG0577	efflux transmembrane transporter activity
J5X95_03840	COG1136	(ABC) transporter
J5X95_03845	COG2205	protein histidine kinase activity
J5X95_03850	COG0745	RESPONSE REGULATOR receiver
J5X95_03855	COG0577	efflux transmembrane transporter activity
J5X95_03860	COG1136	(ABC) transporter
J5X95_03880	COG1131	(ABC) transporter
J5X95_03885	COG1725	Transcriptional regulator
J5X95_03895	COG0640	Transcriptional regulator
J5X95_03900	COG0477	Major facilitator Superfamily
J5X95_03905	COG1242	4 iron, 4 sulfur cluster binding
J5X95_03910	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
J5X95_03920	COG0584	glycerophosphoryl diester phosphodiesterase
J5X95_03930	COG2267	carboxylic ester hydrolase activity
J5X95_03935	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
J5X95_03940	COG1113	amino acid transport
J5X95_03945	COG0367	asparagine synthase
J5X95_03965	COG1506	peptidase
J5X95_03970	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
J5X95_03975	COG1116	anion transmembrane transporter activity
J5X95_03980	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
J5X95_03985	COG0494	nUDIX hydrolase
J5X95_03990	COG4824	toxin secretion phage lysis holin
J5X95_03995	COG0783	Belongs to the Dps family
J5X95_04020	COG0288	reversible hydration of carbon dioxide
J5X95_04030	COG1271	oxidase subunit
J5X95_04035	COG1294	oxidase, subunit
J5X95_04045	COG4948	Mandelate Racemase Muconate Lactonizing
J5X95_04055	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
J5X95_04060	COG0596	Alpha beta hydrolase
J5X95_04070	COG1169	isochorismate synthase
J5X95_04075	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
J5X95_04080	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
J5X95_04205	COG3859	Proton-coupled thiamine transporter YuaJ
J5X95_04210	COG2268	Band 7 protein
J5X95_04215	COG1585	Membrane protein implicated in regulation of membrane protease activity
J5X95_04220	COG2318	DinB family
J5X95_04235	COG1454	alcohol dehydrogenase
J5X95_04240	COG1012	belongs to the aldehyde dehydrogenase family
J5X95_04245	COG1510	regulation of RNA biosynthetic process
J5X95_04255	COG0569	domain protein
J5X95_04260	COG1705	Flagellar rod assembly protein muramidase FlgJ
J5X95_04265	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
J5X95_04265	COG1017	nitric oxide dioxygenase activity
J5X95_04295	COG0628	permease
J5X95_04300	COG0673	inositol 2-dehydrogenase activity
J5X95_04305	COG0693	protein deglycase activity
J5X95_04310	COG0840	transmembrane signaling receptor activity
J5X95_04315	COG0840	transmembrane signaling receptor activity
J5X95_04320	COG0840	transmembrane signaling receptor activity
J5X95_04325	COG0840	transmembrane signaling receptor activity
J5X95_04340	COG2070	2-Nitropropane dioxygenase
J5X95_04345	COG0432	Pfam Uncharacterised protein family UPF0047
J5X95_04350	COG0366	Alpha amylase catalytic
J5X95_04355	COG1253	flavin adenine dinucleotide binding
J5X95_04360	COG2738	Putative neutral zinc metallopeptidase
J5X95_04375	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
J5X95_04400	COG1335	isochorismatase
J5X95_04405	COG1979	alcohol dehydrogenase
J5X95_04410	COG1979	alcohol dehydrogenase
J5X95_04415	COG2155	Conserved Protein
J5X95_04420	COG1098	S1 RNA binding domain
J5X95_04425	COG0436	Aminotransferase
J5X95_04430	COG1522	sequence-specific DNA binding
J5X95_04435	COG2267	carboxylic ester hydrolase activity
J5X95_04445	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
J5X95_04450	COG2205	protein histidine kinase activity
J5X95_04460	COG5018	Exonuclease
J5X95_04465	COG2814	Major facilitator Superfamily
J5X95_04470	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
J5X95_04475	COG3011	Protein conserved in bacteria
J5X95_04485	COG3290	protein histidine kinase activity
J5X95_04490	COG4565	transcriptional regulatory protein
J5X95_04495	COG1744	ABC transporter substrate-binding protein PnrA-like
J5X95_04500	COG3845	ABC transporter
J5X95_04505	COG4603	Belongs to the binding-protein-dependent transport system permease family
J5X95_04510	COG1079	Belongs to the binding-protein-dependent transport system permease family
J5X95_04520	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
J5X95_04520	COG2111	Na H antiporter
J5X95_04525	COG2111	Na H antiporter
J5X95_04530	COG1006	Multisubunit Na H antiporter MnhC subunit
J5X95_04535	COG0651	ATP synthesis coupled electron transport
J5X95_04540	COG1863	multisubunit Na H antiporter MnhE subunit
J5X95_04545	COG2212	antiporter activity
J5X95_04550	COG1320	monovalent cation:proton antiporter activity
J5X95_04555	COG2050	protein possibly involved in aromatic compounds catabolism
J5X95_04560	COG2197	response regulator
J5X95_04565	COG4585	Histidine kinase
J5X95_04590	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
J5X95_04595	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
J5X95_04600	COG1335	isochorismatase
J5X95_04605	COG5506	Protein of unknown function (DUF1694)
J5X95_04620	COG0628	permease
J5X95_04630	COG1418	mRNA catabolic process
J5X95_04635	COG1028	Short-chain dehydrogenase reductase Sdr
J5X95_04645	COG1511	domain protein
J5X95_04650	COG0433	COG0433 Predicted ATPase
J5X95_04650	COG1674	ftsk spoiiie
J5X95_04655	COG4499	WXG100 protein secretion system (Wss), protein YukC
J5X95_04660	COG5417	Belongs to the EsaB family
J5X95_04665	COG4842	Belongs to the WXG100 family
J5X95_04670	COG2508	Transcriptional regulator
J5X95_04670	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
J5X95_04675	COG0686	Belongs to the AlaDH PNT family
J5X95_04680	COG5634	Uncharacterized conserved protein (DUF2278)
J5X95_04685	COG3251	PFAM MbtH domain protein
J5X95_04690	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J5X95_04695	COG1535	isochorismatase
J5X95_04695	COG3433	isochorismatase activity
J5X95_04700	COG1021	2,3-dihydroxybenzoate-AMP ligase
J5X95_04705	COG1169	isochorismate synthase
J5X95_04710	COG1028	Short-chain dehydrogenase reductase Sdr
J5X95_04715	COG2819	hydrolase of the alpha beta superfamily
J5X95_04720	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
J5X95_04725	COG1268	BioY protein
J5X95_04730	COG2056	Na+-H+ antiporter family
J5X95_04740	COG1963	PFAM Acid phosphatase vanadium-dependent haloperoxidase related
J5X95_04745	COG3584	3D domain protein
J5X95_04760	COG1252	NADH dehydrogenase
J5X95_04790	COG1131	(ABC) transporter
J5X95_04810	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
J5X95_04815	COG3967	Belongs to the short-chain dehydrogenases reductases (SDR) family
J5X95_04820	COG0316	Belongs to the HesB IscA family
J5X95_04830	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
J5X95_04840	COG1252	NADH dehydrogenase
J5X95_04845	COG4837	Protein of unknown function (DUF1462)
J5X95_04850	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
J5X95_04855	COG0823	Involved in the tonB-independent uptake of proteins
J5X95_04855	COG1506	peptidase
J5X95_04855	COG4946	Tricorn protease homolog
J5X95_04865	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
J5X95_04870	COG0460	homoserine dehydrogenase
J5X95_04875	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
J5X95_04880	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
J5X95_04885	COG0647	UMP catabolic process
J5X95_04890	COG2445	Protein of unknown function DUF86
J5X95_04895	COG4470	Protein conserved in bacteria
J5X95_04905	COG0739	heme binding
J5X95_04915	COG0737	Belongs to the 5'-nucleotidase family
J5X95_04920	COG0730	response to heat
J5X95_04925	COG1801	Protein of unknown function DUF72
J5X95_04940	COG2508	Transcriptional regulator
J5X95_04950	COG2814	Major facilitator Superfamily
J5X95_04955	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
J5X95_04960	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
J5X95_04965	COG2356	endonuclease I
J5X95_04970	COG3842	ATPase activity
J5X95_04975	COG2188	Transcriptional regulator
J5X95_04980	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
J5X95_04985	COG0395	ABC-type sugar transport system, permease component
J5X95_04990	COG1175	transmembrane transport
J5X95_04995	COG1653	transport
J5X95_05000	COG2222	sugar isomerase
J5X95_05005	COG0789	Transcriptional regulator
J5X95_05020	COG0322	excinuclease ABC activity
J5X95_05025	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
J5X95_05030	COG2226	methyltransferase
J5X95_05040	COG3409	Peptidoglycan-binding domain 1 protein
J5X95_05045	COG0719	Fe-S assembly protein
J5X95_05050	COG0822	iron-sulfur transferase activity
J5X95_05055	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
J5X95_05060	COG0719	Fe-S assembly protein
J5X95_05065	COG0396	ATPase activity
J5X95_05075	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
J5X95_05080	COG1464	Belongs to the NlpA lipoprotein family
J5X95_05085	COG2011	ABC-type metal ion transport system permease component
J5X95_05090	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
J5X95_05100	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
J5X95_05105	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
J5X95_05120	COG1393	Belongs to the ArsC family
J5X95_05125	COG1960	acyl-CoA dehydrogenase activity
J5X95_05130	COG0183	Belongs to the thiolase family
J5X95_05135	COG1024	Enoyl-CoA hydratase
J5X95_05135	COG1250	3-hydroxyacyl-CoA dehydrogenase
J5X95_05155	COG5577	PFAM Coat F domain
J5X95_05160	COG1846	Transcriptional regulator
J5X95_05165	COG0477	Major facilitator Superfamily
J5X95_05170	COG0583	DNA-binding transcription factor activity
J5X95_05190	COG1120	ATPase activity
J5X95_05205	COG1028	Short-chain dehydrogenase reductase Sdr
J5X95_05210	COG0783	Belongs to the Dps family
J5X95_05215	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
J5X95_05220	COG0745	RESPONSE REGULATOR receiver
J5X95_05225	COG2770	Histidine kinase
J5X95_05225	COG2205	protein histidine kinase activity
J5X95_05235	COG1309	transcriptional regulator
J5X95_05240	COG0114	fumarate hydratase activity
J5X95_05250	COG0697	spore germination
J5X95_05255	COG0814	amino acid
J5X95_05265	COG2197	response regulator
J5X95_05270	COG4585	Histidine kinase
J5X95_05275	COG4758	membrane
J5X95_05280	COG3595	metallopeptidase activity
J5X95_05285	COG1842	Phage shock protein A
J5X95_05290	COG4758	membrane
J5X95_05295	COG2814	Major facilitator Superfamily
J5X95_05300	COG2096	Adenosyltransferase
J5X95_05305	COG1120	ATPase activity
J5X95_05310	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5X95_05315	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
J5X95_05320	COG1028	Short-chain dehydrogenase reductase Sdr
J5X95_05325	COG3386	PFAM SMP-30 Gluconolaconase
J5X95_05330	COG2205	protein histidine kinase activity
J5X95_05335	COG0745	RESPONSE REGULATOR receiver
J5X95_05345	COG1191	sigma factor activity
J5X95_05355	COG2140	Oxalate decarboxylase
J5X95_05370	COG1120	ATPase activity
J5X95_05375	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5X95_05380	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5X95_05385	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
J5X95_05390	COG0531	amino acid
J5X95_05400	COG1988	membrane-bound metal-dependent
J5X95_05405	COG1368	sulfuric ester hydrolase activity
J5X95_05410	COG1910	domain protein
J5X95_05415	COG0725	ABC transporter, periplasmic molybdate-binding protein
J5X95_05420	COG4149	molybdate abc transporter
J5X95_05425	COG2197	response regulator
J5X95_05430	COG3850	Histidine kinase
J5X95_05435	COG1131	(ABC) transporter
J5X95_05445	COG0842	Transport permease protein
J5X95_05450	COG0656	L-ascorbic acid biosynthetic process
J5X95_05470	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
J5X95_05475	COG3973	AAA domain
J5X95_05480	COG2860	membrane
J5X95_05490	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
J5X95_05495	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
J5X95_05500	COG2217	Heavy metal translocating P-type atpase
J5X95_05505	COG2217	Heavy metal translocating P-type atpase
J5X95_05510	COG2608	mercury ion transmembrane transporter activity
J5X95_05515	COG1937	Protein conserved in bacteria
J5X95_05520	COG0673	inositol 2-dehydrogenase activity
J5X95_05535	COG2814	Major facilitator Superfamily
J5X95_05550	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
J5X95_05555	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
J5X95_05560	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
J5X95_05565	COG1126	abc transporter atp-binding protein
J5X95_05570	COG0765	amino acid transport
J5X95_05575	COG0765	amino acid transport
J5X95_05580	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J5X95_05585	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J5X95_05590	COG0454	-acetyltransferase
J5X95_05595	COG0583	DNA-binding transcription factor activity
J5X95_05600	COG1028	Short-chain dehydrogenase reductase Sdr
J5X95_05605	COG2732	(Barnase) inhibitor
J5X95_05620	COG0557	exoribonuclease II activity
J5X95_05625	COG1647	Serine aminopeptidase, S33
J5X95_05630	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
J5X95_05635	COG1476	TRANSCRIPTIONal
J5X95_05640	COG1396	sequence-specific DNA binding
J5X95_05645	COG1396	sequence-specific DNA binding
J5X95_05650	COG1733	regulation of RNA biosynthetic process
J5X95_05675	COG1131	(ABC) transporter
J5X95_05680	COG1174	glycine betaine transport
J5X95_05685	COG1732	Glycine betaine
J5X95_05690	COG1174	glycine betaine transport
J5X95_05695	COG1125	glycine betaine transport
J5X95_05695	COG0517	IMP dehydrogenase activity
J5X95_05700	COG1510	regulation of RNA biosynthetic process
J5X95_05705	COG1174	glycine betaine transport
J5X95_05710	COG1732	Glycine betaine
J5X95_05715	COG1174	glycine betaine transport
J5X95_05720	COG0517	IMP dehydrogenase activity
J5X95_05720	COG1125	glycine betaine transport
J5X95_05725	COG1510	regulation of RNA biosynthetic process
J5X95_05730	COG2095	MarC family integral membrane protein
J5X95_05735	COG3064	Membrane
J5X95_05740	COG4640	response to antibiotic
J5X95_05745	COG0456	acetyltransferase
J5X95_05760	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
J5X95_05775	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
J5X95_05780	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J5X95_05785	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
J5X95_05795	COG2234	aminopeptidase activity
J5X95_05815	COG0126	phosphoglycerate kinase activity
J5X95_05820	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
J5X95_05825	COG2390	Transcriptional regulator
J5X95_05830	COG2814	Major facilitator Superfamily
J5X95_05835	COG1609	Transcriptional regulator
J5X95_05840	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
J5X95_05850	COG0583	DNA-binding transcription factor activity
J5X95_05855	COG0697	spore germination
J5X95_05865	COG1113	amino acid transport
J5X95_05875	COG1609	Transcriptional regulator
J5X95_05885	COG0561	phosphatase activity
J5X95_05895	COG1737	Transcriptional regulator
J5X95_05900	COG1070	Carbohydrate kinase
J5X95_05925	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
J5X95_05930	COG2186	Transcriptional regulator
J5X95_05935	COG1620	l-lactate permease
J5X95_05940	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
J5X95_05950	COG5039	Polysaccharide pyruvyl transferase
J5X95_05955	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
J5X95_05960	COG0110	maltose O-acetyltransferase activity
J5X95_05965	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
J5X95_05970	COG2244	polysaccharide biosynthetic process
J5X95_05975	COG1216	Glycosyl transferase, family 2
J5X95_05980	COG5039	Polysaccharide pyruvyl transferase
J5X95_05985	COG1216	Glycosyl transferase, family 2
J5X95_05995	COG0438	transferase activity, transferring glycosyl groups
J5X95_06000	COG1215	transferase activity, transferring glycosyl groups
J5X95_06005	COG0438	transferase activity, transferring glycosyl groups
J5X95_06010	COG1086	Polysaccharide biosynthesis protein
J5X95_06015	COG0489	protein tyrosine kinase activity
J5X95_06020	COG3944	biosynthesis protein
J5X95_06025	COG1396	sequence-specific DNA binding
J5X95_06030	COG2272	Belongs to the type-B carboxylesterase lipase family
J5X95_06040	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
J5X95_06045	COG2364	Membrane
J5X95_06050	COG0456	acetyltransferase
J5X95_06055	COG3479	Phenolic acid decarboxylase
J5X95_06105	COG2223	nitrite transmembrane transporter activity
J5X95_06110	COG1609	Transcriptional regulator
J5X95_06120	COG0583	DNA-binding transcription factor activity
J5X95_06125	COG2828	Protein conserved in bacteria
J5X95_06130	COG0477	Major facilitator Superfamily
J5X95_06130	COG2814	Major facilitator Superfamily
J5X95_06135	COG1611	Belongs to the LOG family
J5X95_06140	COG1694	Mazg nucleotide pyrophosphohydrolase
J5X95_06145	COG0659	secondary active sulfate transmembrane transporter activity
J5X95_06150	COG0288	reversible hydration of carbon dioxide
J5X95_06155	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
J5X95_06160	COG4290	ribonuclease
J5X95_06165	COG2162	N-hydroxyarylamine O-acetyltransferase activity
J5X95_06170	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
J5X95_06180	COG0391	Required for morphogenesis under gluconeogenic growth conditions
J5X95_06190	COG1051	belongs to the nudix hydrolase family
J5X95_06195	COG0492	ferredoxin-NADP+ reductase activity
J5X95_06200	COG0791	NLP P60 protein
J5X95_06200	COG3883	PFAM NLP P60 protein
J5X95_06205	COG0457	Tetratricopeptide repeat
J5X95_06210	COG5002	protein histidine kinase activity
J5X95_06215	COG0745	RESPONSE REGULATOR receiver
J5X95_06220	COG1132	(ABC) transporter
J5X95_06225	COG0140	phosphoribosyl-ATP diphosphatase activity
J5X95_06225	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
J5X95_06250	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
J5X95_06265	COG4990	cell redox homeostasis
J5X95_06270	COG0110	maltose O-acetyltransferase activity
J5X95_06290	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
J5X95_06300	COG2188	Transcriptional regulator
J5X95_06305	COG1309	transcriptional regulator
J5X95_06310	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
J5X95_06315	COG1950	PFAM Membrane protein of
J5X95_06320	COG1983	PspC domain protein
J5X95_06325	COG3595	metallopeptidase activity
J5X95_06340	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
J5X95_06350	COG4897	Protein conserved in bacteria
J5X95_06355	COG0574	Belongs to the PEP-utilizing enzyme family
J5X95_06355	COG3848	Pyruvate phosphate dikinase
J5X95_06360	COG1309	transcriptional regulator
J5X95_06365	COG2814	Major facilitator Superfamily
J5X95_06380	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
J5X95_06390	COG0793	Belongs to the peptidase S41A family
J5X95_06390	COG3409	Peptidoglycan-binding domain 1 protein
J5X95_06395	COG3420	alginic acid biosynthetic process
J5X95_06400	COG2177	Part of the ABC transporter FtsEX involved in
J5X95_06405	COG2884	Cell division ATP-binding protein ftsE
J5X95_06410	COG2010	Cytochrome c
J5X95_06415	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
J5X95_06430	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
J5X95_06445	COG1516	flagellar protein fliS
J5X95_06450	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
J5X95_06455	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
J5X95_06475	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
J5X95_06480	COG4786	Flagellar basal body rod
J5X95_06480	COG1256	bacterial-type flagellum assembly
J5X95_06485	COG3418	PFAM FlgN family protein
J5X95_06490	COG2747	anti-sigma28 factor FlgM
J5X95_06500	COG1040	competence protein
J5X95_06510	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
J5X95_06515	COG1307	EDD domain protein, DegV family
J5X95_06520	COG2197	response regulator
J5X95_06525	COG4585	Histidine kinase
J5X95_06530	COG1739	Uncharacterized protein family UPF0029
J5X95_06535	COG1316	TRANSCRIPTIONal
J5X95_06540	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
J5X95_06545	COG0438	transferase activity, transferring glycosyl groups
J5X95_06550	COG1215	transferase activity, transferring glycosyl groups
J5X95_06555	COG3206	protein involved in exopolysaccharide biosynthesis
J5X95_06560	COG3307	-O-antigen
J5X95_06565	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
J5X95_06570	COG0438	transferase activity, transferring glycosyl groups
J5X95_06570	COG0297	glycogen (starch) synthase activity
J5X95_06575	COG2244	polysaccharide biosynthetic process
J5X95_06585	COG0860	N-Acetylmuramoyl-L-alanine amidase
J5X95_06585	COG2247	cell wall binding repeat
J5X95_06590	COG2247	cell wall binding repeat
J5X95_06590	COG2385	sporulation resulting in formation of a cellular spore
J5X95_06600	COG1316	TRANSCRIPTIONal
J5X95_06605	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
J5X95_06610	COG1210	Utp--glucose-1-phosphate uridylyltransferase
J5X95_06615	COG1134	teichoic acid transport
J5X95_06620	COG1682	transport, permease protein
J5X95_06625	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
J5X95_06635	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
J5X95_06640	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
J5X95_06645	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
J5X95_06650	COG4193	domain, Protein
J5X95_06655	COG1482	cell wall glycoprotein biosynthetic process
J5X95_06660	COG0697	spore germination
J5X95_06665	COG0814	amino acid
J5X95_06675	COG1215	transferase activity, transferring glycosyl groups
J5X95_06680	COG2814	Major facilitator Superfamily
J5X95_06685	COG1316	TRANSCRIPTIONal
J5X95_06690	COG0561	phosphatase activity
J5X95_06700	COG0791	NLP P60 protein
J5X95_06710	COG2843	Capsule synthesis protein
J5X95_06720	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
J5X95_06725	COG0697	spore germination
J5X95_06730	COG0814	amino acid
J5X95_06740	COG1609	Transcriptional regulator
J5X95_06745	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
J5X95_06755	COG1129	ABC transporter
J5X95_06760	COG1172	Belongs to the binding-protein-dependent transport system permease family
J5X95_06765	COG1879	ABC-type sugar transport system periplasmic component
J5X95_06770	COG3103	Sh3 type 3 domain protein
J5X95_06775	COG2249	NAD(P)H dehydrogenase (quinone) activity
J5X95_06780	COG3527	Alpha-acetolactate decarboxylase
J5X95_06785	COG0028	Belongs to the TPP enzyme family
J5X95_06790	COG0583	DNA-binding transcription factor activity
J5X95_06795	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
J5X95_06810	COG5337	Spore coat protein CotH
J5X95_06820	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
J5X95_06830	COG0405	Gamma-glutamyltransferase
J5X95_06835	COG1522	sequence-specific DNA binding
J5X95_06840	COG2059	Chromate
J5X95_06845	COG2059	Chromate
J5X95_06885	COG5444	nuclease activity
J5X95_06900	COG3878	Protein conserved in bacteria
J5X95_06905	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
J5X95_06910	COG4464	protein tyrosine phosphatase activity
J5X95_06915	COG0489	protein tyrosine kinase activity
J5X95_06920	COG3944	biosynthesis protein
J5X95_06930	COG4715	Zinc finger, swim domain protein
J5X95_06935	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
J5X95_06940	COG0561	phosphatase activity
J5X95_06945	COG1349	DNA-binding transcription factor activity
J5X95_06950	COG0629	single-stranded DNA binding
J5X95_06975	COG0457	Tetratricopeptide repeat
J5X95_06980	COG4786	Flagellar basal body rod
J5X95_06985	COG4786	Flagellar basal body rod
J5X95_06990	COG1077	Cell shape determining protein MreB Mrl
J5X95_06995	COG1609	Transcriptional regulator
J5X95_07000	COG1846	Transcriptional regulator
J5X95_07005	COG2814	Major facilitator Superfamily
J5X95_07010	COG1953	Uracil, thiamine, allantoin
J5X95_07015	COG0477	Major facilitator Superfamily
J5X95_07020	COG1335	isochorismatase
J5X95_07025	COG0004	ammonium transporteR
J5X95_07030	COG0347	Belongs to the P(II) protein family
J5X95_07035	COG0772	Belongs to the SEDS family
J5X95_07040	COG0671	phosphoesterase, PA-phosphatase related
J5X95_07050	COG0739	heme binding
J5X95_07055	COG1247	-acetyltransferase
J5X95_07070	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
J5X95_07085	COG0726	polysaccharide deacetylase
J5X95_07090	COG1959	2 iron, 2 sulfur cluster binding
J5X95_07105	COG0831	urea catabolic process
J5X95_07110	COG3237	CsbD-like
J5X95_07115	COG1994	Peptidase M50
J5X95_07120	COG0457	Tetratricopeptide repeat
J5X95_07130	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
J5X95_07140	COG2304	oxidoreductase activity
J5X95_07145	COG2304	oxidoreductase activity
J5X95_07150	COG2385	sporulation resulting in formation of a cellular spore
J5X95_07155	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
J5X95_07165	COG4836	Membrane
J5X95_07235	COG0698	ribose 5-phosphate isomerase
J5X95_07240	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
J5X95_07250	COG0009	L-threonylcarbamoyladenylate synthase
J5X95_07255	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
J5X95_07275	COG2890	protein-(glutamine-N5) methyltransferase activity
J5X95_07280	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
J5X95_07285	COG0346	lactoylglutathione lyase activity
J5X95_07290	COG0789	Transcriptional regulator
J5X95_07295	COG0679	Auxin Efflux Carrier
J5X95_07300	COG0281	malic enzyme
J5X95_07315	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
J5X95_07320	COG1494	fructose-1,6-bisphosphatase
J5X95_07325	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
J5X95_07335	COG0191	fructose-bisphosphate aldolase activity
J5X95_07340	COG2204	response regulator
J5X95_07345	COG4821	SIS domain
J5X95_07360	COG0247	lactate metabolic process
J5X95_07360	COG2181	nitrate reductase activity
J5X95_07365	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
J5X95_07380	COG1132	(ABC) transporter
J5X95_07385	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
J5X95_07395	COG2181	nitrate reductase activity
J5X95_07400	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
J5X95_07405	COG1140	nitrate reductase beta subunit
J5X95_07410	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
J5X95_07415	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
J5X95_07425	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
J5X95_07430	COG2223	nitrite transmembrane transporter activity
J5X95_07440	COG4506	Protein conserved in bacteria
J5X95_07450	COG3391	amine dehydrogenase activity
J5X95_07455	COG3391	amine dehydrogenase activity
J5X95_07460	COG0457	Tetratricopeptide repeat
J5X95_07500	COG0010	Belongs to the arginase family
J5X95_07505	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
J5X95_07510	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
J5X95_07525	COG1994	Peptidase M50
J5X95_07530	COG1942	4-Oxalocrotonate Tautomerase
J5X95_07535	COG1846	Transcriptional regulator
J5X95_07540	COG0531	amino acid
J5X95_07545	COG3465	dGTPase activity
J5X95_07550	COG1078	dGTPase activity
J5X95_07565	COG1695	Transcriptional regulator
J5X95_07575	COG1131	(ABC) transporter
J5X95_07580	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
J5X95_07610	COG0583	DNA-binding transcription factor activity
J5X95_07615	COG2855	membrane
J5X95_07620	COG0280	phosphate acetyltransferase
J5X95_07630	COG1028	Short-chain dehydrogenase reductase Sdr
J5X95_07635	COG0436	Aminotransferase
J5X95_07665	COG2814	Major facilitator Superfamily
J5X95_07670	COG2814	Major facilitator Superfamily
J5X95_07675	COG0833	amino acid
J5X95_07680	COG4187	Peptidase family M20/M25/M40
J5X95_07685	COG1012	belongs to the aldehyde dehydrogenase family
J5X95_07690	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
J5X95_07695	COG2205	protein histidine kinase activity
J5X95_07700	COG0745	RESPONSE REGULATOR receiver
J5X95_07715	COG1131	(ABC) transporter
J5X95_07720	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
J5X95_07725	COG1091	dTDP-4-dehydrorhamnose reductase activity
J5X95_07730	COG1088	dTDP-glucose 4,6-dehydratase activity
J5X95_07735	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
J5X95_07740	COG3980	spore coat polysaccharide biosynthesis protein
J5X95_07745	COG1861	Spore coat polysaccharide biosynthesis protein F CMP-KDO synthetase
J5X95_07750	COG2089	acid synthase
J5X95_07755	COG0456	acetyltransferase
J5X95_07760	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
J5X95_07765	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
J5X95_07770	COG0463	Glycosyl transferase, family 2
J5X95_07780	COG2363	Small membrane protein
J5X95_07785	COG2233	PERMEase
J5X95_07800	COG1216	Glycosyl transferase, family 2
J5X95_07815	COG1695	Transcriptional regulator
J5X95_07820	COG0351	phosphomethylpyrimidine kinase
J5X95_07830	COG1621	beta-fructofuranosidase activity
J5X95_07835	COG1263	PTS System
J5X95_07835	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J5X95_07840	COG3711	transcriptional antiterminator
J5X95_07850	COG1404	Belongs to the peptidase S8 family
J5X95_07855	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
J5X95_07860	COG0778	Nitroreductase
J5X95_07865	COG0772	Belongs to the SEDS family
J5X95_07870	COG0454	-acetyltransferase
J5X95_07890	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
J5X95_07895	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
J5X95_07900	COG2261	transglycosylase associated protein
J5X95_07905	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
J5X95_07915	COG2246	polysaccharide biosynthetic process
J5X95_07920	COG1309	transcriptional regulator
J5X95_07940	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
J5X95_07950	COG2822	iron ion transport
J5X95_07965	COG0583	DNA-binding transcription factor activity
J5X95_07975	COG1346	cytolysis
J5X95_07980	COG1131	(ABC) transporter
J5X95_08005	COG4895	conserved protein (DUF2196)
J5X95_08010	COG0789	Transcriptional regulator
J5X95_08015	COG5504	Zn-dependent protease
J5X95_08020	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
J5X95_08025	COG0346	lactoylglutathione lyase activity
J5X95_08030	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
J5X95_08035	COG1404	Belongs to the peptidase S8 family
J5X95_08040	COG1442	glycosyl transferase family 8
J5X95_08045	COG2357	RelA SpoT domain protein
J5X95_08050	COG1575	Belongs to the MenA family. Type 1 subfamily
J5X95_08065	COG1696	Membrane protein involved in D-alanine export
J5X95_08075	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
J5X95_08080	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
J5X95_08085	COG1486	melibiose metabolic process
J5X95_08090	COG1447	Phosphotransferase system cellobiose-specific component IIA
J5X95_08095	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
J5X95_08100	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
J5X95_08105	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
J5X95_08105	COG3711	transcriptional antiterminator
J5X95_08115	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5X95_08120	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5X95_08130	COG0640	Transcriptional regulator
J5X95_08135	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
J5X95_08140	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
J5X95_08145	COG1447	Phosphotransferase system cellobiose-specific component IIA
J5X95_08150	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
J5X95_08155	COG2723	6-phospho-beta-galactosidase activity
J5X95_08160	COG1940	carbohydrate kinase activity
J5X95_08165	COG1482	cell wall glycoprotein biosynthetic process
J5X95_08175	COG0753	catalase activity
J5X95_08180	COG3049	Linear amide C-N hydrolases, choloylglycine hydrolase family
J5X95_08185	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
J5X95_08190	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
J5X95_08195	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
J5X95_08200	COG4988	ABC transporter
J5X95_08205	COG1294	oxidase, subunit
J5X95_08210	COG1271	oxidase subunit
J5X95_08215	COG3493	citrate carrier protein
J5X95_08220	COG0726	polysaccharide deacetylase
J5X95_08225	COG3842	ATPase activity
J5X95_08230	COG2508	Transcriptional regulator
J5X95_08235	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
J5X95_08245	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
J5X95_08260	COG4894	glucomannan catabolic process
J5X95_08265	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
J5X95_08270	COG0500	methyltransferase
J5X95_08275	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
J5X95_08290	COG0753	catalase activity
J5X95_08290	COG0693	protein deglycase activity
J5X95_08295	COG2851	Citrate transporter
J5X95_08300	COG2273	Hydrolase Family 16
J5X95_08305	COG3711	transcriptional antiterminator
J5X95_08310	COG2270	Major facilitator Superfamily
J5X95_08315	COG0513	Belongs to the DEAD box helicase family
J5X95_08380	COG0697	spore germination
J5X95_08385	COG0589	response to stress
J5X95_08390	COG2723	6-phospho-beta-galactosidase activity
J5X95_08395	COG2190	(PTS) system
J5X95_08395	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J5X95_08395	COG1263	PTS System
J5X95_08405	COG0494	nUDIX hydrolase
J5X95_08410	COG3507	Belongs to the glycosyl hydrolase 43 family
J5X95_08435	COG0010	Belongs to the arginase family
J5X95_08440	COG0833	amino acid
J5X95_08445	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
J5X95_08450	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
J5X95_08460	COG2390	Transcriptional regulator
J5X95_08465	COG0561	phosphatase activity
J5X95_08495	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
J5X95_08500	COG5294	Protein conserved in bacteria
J5X95_08505	COG0577	efflux transmembrane transporter activity
J5X95_08510	COG1136	(ABC) transporter
J5X95_08515	COG2205	protein histidine kinase activity
J5X95_08520	COG0745	RESPONSE REGULATOR receiver
J5X95_08535	COG1082	Xylose isomerase domain protein TIM barrel
J5X95_08545	COG2814	Major facilitator Superfamily
J5X95_08575	COG1349	DNA-binding transcription factor activity
J5X95_08580	COG0667	Aldo Keto reductase
J5X95_08585	COG2814	Major facilitator Superfamily
J5X95_08595	COG1028	Short-chain dehydrogenase reductase Sdr
J5X95_08600	COG2197	response regulator
J5X95_08605	COG4585	Histidine kinase
J5X95_08610	COG3239	Fatty acid desaturase
J5X95_08615	COG1309	transcriptional regulator
J5X95_08620	COG1012	belongs to the aldehyde dehydrogenase family
J5X95_08625	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
J5X95_08635	COG0640	Transcriptional regulator
J5X95_08640	COG2814	Major facilitator Superfamily
J5X95_08645	COG1714	RDD family
J5X95_08655	COG0450	alkyl hydroperoxide reductase
J5X95_08660	COG3634	alkyl hydroperoxide reductase activity
J5X95_08665	COG3177	Filamentation induced by cAMP protein fic
J5X95_08670	COG1113	amino acid transport
J5X95_08680	COG2080	2 iron, 2 sulfur cluster binding
J5X95_08695	COG2068	MobA-Related Protein
J5X95_08700	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
J5X95_08715	COG1715	Restriction endonuclease
J5X95_08750	COG3863	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
J5X95_08755	COG0667	Aldo Keto reductase
J5X95_08760	COG0456	acetyltransferase
J5X95_08765	COG0457	Tetratricopeptide repeat
J5X95_08770	COG0010	Belongs to the arginase family
J5X95_08775	COG0833	amino acid
J5X95_08780	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
J5X95_08785	COG5658	integral membrane protein
J5X95_08790	COG0640	Transcriptional regulator
J5X95_08795	COG3829	transcription factor binding
J5X95_08805	COG0488	(ABC) transporter
J5X95_08820	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
J5X95_08825	COG3850	Histidine kinase
J5X95_08825	COG5002	protein histidine kinase activity
J5X95_08830	COG0745	RESPONSE REGULATOR receiver
J5X95_08840	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
J5X95_08845	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
J5X95_08850	COG4853	Protein conserved in bacteria
J5X95_08855	COG4863	YycH protein
J5X95_08860	COG5002	protein histidine kinase activity
J5X95_08865	COG0745	RESPONSE REGULATOR receiver
J5X95_08895	COG0346	lactoylglutathione lyase activity
J5X95_08900	COG0305	Participates in initiation and elongation during chromosome replication
J5X95_08915	COG3093	addiction module antidote protein HigA
J5X95_08920	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
J5X95_08935	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
J5X95_08940	COG0438	transferase activity, transferring glycosyl groups
J5X95_08960	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
J5X95_08965	COG4241	membrane
J5X95_08975	COG5577	PFAM Coat F domain
J5X95_08980	COG1733	regulation of RNA biosynthetic process
J5X95_08990	COG0697	spore germination
J5X95_08995	COG1621	beta-fructofuranosidase activity
J5X95_09000	COG1621	beta-fructofuranosidase activity
J5X95_09005	COG1802	Transcriptional regulator
J5X95_09010	COG2318	DinB family
J5X95_09015	COG2211	Major facilitator Superfamily
J5X95_09020	COG0583	DNA-binding transcription factor activity
J5X95_09035	COG0778	Nitroreductase
J5X95_09040	COG1846	Transcriptional regulator
J5X95_09045	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
J5X95_09050	COG1846	Transcriptional regulator
J5X95_09055	COG2153	protein acetylation
J5X95_09065	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
J5X95_09070	COG0583	DNA-binding transcription factor activity
J5X95_09075	COG1028	Short-chain dehydrogenase reductase Sdr
J5X95_09095	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
J5X95_09100	COG0697	spore germination
J5X95_09105	COG1331	Highly conserved protein containing a thioredoxin domain
J5X95_09110	COG1266	CAAX protease self-immunity
J5X95_09115	COG0477	Major facilitator Superfamily
J5X95_09115	COG2814	Major facilitator Superfamily
J5X95_09120	COG0346	lactoylglutathione lyase activity
J5X95_09125	COG1609	Transcriptional regulator
J5X95_09130	COG0708	Exodeoxyribonuclease III
J5X95_09135	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
J5X95_09140	COG2169	Transcriptional regulator
J5X95_09150	COG0629	single-stranded DNA binding
J5X95_09160	COG0012	GTP binding
J5X95_09165	COG0243	molybdopterin cofactor binding
J5X95_09170	COG4481	Protein conserved in bacteria
J5X95_09175	COG3949	Membrane
J5X95_09190	COG1475	DNA binding
J5X95_09195	COG1192	Involved in chromosome partitioning
J5X95_09220	COG1847	R3H domain protein
J5X95_09225	COG0706	membrane insertase activity
J5X95_09245	COG0592	DNA-directed DNA polymerase activity
J5X95_09250	COG2501	S4 domain
J5X95_09265	COG0187	DNA topoisomerase II activity
J5X95_09270	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
J5X95_09305	COG0516	GMP reductase activity
J5X95_09305	COG0517	IMP dehydrogenase activity
J5X95_09310	COG1686	Belongs to the peptidase S11 family
J5X95_09330	COG1929	Belongs to the glycerate kinase type-1 family
J5X95_09340	COG1428	Deoxynucleoside kinase
J5X95_09345	COG1428	Deoxynucleoside kinase
J5X95_09350	COG1388	LysM domain
J5X95_09350	COG3858	chitin binding
J5X95_09355	COG1335	isochorismatase
J5X95_09360	COG0590	tRNA wobble adenosine to inosine editing
J5X95_09370	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
J5X95_09375	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
J5X95_09425	COG4915	5-bromo-4-chloroindolyl phosphate hydrolysis protein
J5X95_09430	COG3853	Toxic anion resistance protein (TelA)
J5X95_09435	COG1982	Orn Lys Arg decarboxylase major
J5X95_09445	COG3870	Protein conserved in bacteria
J5X95_09450	COG1728	Protein conserved in bacteria
J5X95_09455	COG0470	DNA polymerase III
J5X95_09460	COG1774	PSP1 C-terminal conserved region
J5X95_09470	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
J5X95_09480	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
J5X95_09485	COG2002	toxin-antitoxin pair type II binding
J5X95_09490	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J5X95_09490	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J5X95_09495	COG0084	hydrolase, TatD family'
J5X95_09500	COG3584	3D domain protein
J5X95_09500	COG3583	domain protein
J5X95_09505	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
J5X95_09510	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
J5X95_09520	COG4466	Protein conserved in bacteria
J5X95_09535	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
J5X95_09540	COG0251	oxidation-reduction process
J5X95_09555	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
J5X95_09575	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
J5X95_09580	COG2002	toxin-antitoxin pair type II binding
J5X95_09585	COG2244	polysaccharide biosynthetic process
J5X95_09590	COG3956	TIGRFAM MazG family protein
J5X95_09595	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
J5X95_09610	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
J5X95_09615	COG1098	S1 RNA binding domain
J5X95_09630	COG2208	phosphoserine phosphatase activity
J5X95_09635	COG2304	oxidoreductase activity
J5X95_09640	COG0515	serine threonine protein kinase
J5X95_09645	COG0037	tRNA processing
J5X95_09650	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
J5X95_09655	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
J5X95_09670	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
J5X95_09675	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
J5X95_09680	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
J5X95_09685	COG0512	Glutamine amidotransferase of anthranilate synthase
J5X95_09690	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
J5X95_09695	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
J5X95_09700	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
J5X95_09705	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
J5X95_09710	COG1396	sequence-specific DNA binding
J5X95_09715	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
J5X95_09720	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
J5X95_09800	COG4463	regulation of RNA biosynthetic process
J5X95_09805	COG3880	PFAM UvrB UvrC protein
J5X95_09815	COG0542	response to heat
J5X95_09820	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
J5X95_09825	COG1623	Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c- di-AMP acts as a signaling molecule that couples DNA integrity with progression of sporulation. The rise in c-di-AMP level generated by DisA while scanning the chromosome, operates as a positive signal that advances sporulation
J5X95_09830	COG4956	integral membrane protein (PIN domain superfamily)
J5X95_09850	COG1045	serine acetyltransferase
J5X95_09860	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
J5X95_09865	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
J5X95_09870	COG3688	RNA-binding protein containing a PIN domain
J5X95_09875	COG1595	DNA-templated transcription, initiation
J5X95_09885	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
J5X95_09890	COG0250	Participates in transcription elongation, termination and antitermination
J5X95_09915	COG2813	Specifically methylates the guanine in position
J5X95_09930	COG1358	cellular component organization or biogenesis
J5X95_09955	COG0596	Alpha beta hydrolase
J5X95_10065	COG0201	protein transport
J5X95_10075	COG0024	Methionine aminopeptidase
J5X95_10085	COG0257	Belongs to the bacterial ribosomal protein bL36 family
J5X95_10110	COG1122	ATPase activity
J5X95_10115	COG1122	ATPase activity
J5X95_10120	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
J5X95_10140	COG2226	methyltransferase
J5X95_10145	COG2318	DinB family
J5X95_10155	COG0860	N-Acetylmuramoyl-L-alanine amidase
J5X95_10160	COG0489	protein tyrosine kinase activity
J5X95_10170	COG2194	sulfuric ester hydrolase activity
J5X95_10175	COG0726	polysaccharide deacetylase
J5X95_10235	COG0738	Major facilitator superfamily
J5X95_10240	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
J5X95_10255	COG0659	secondary active sulfate transmembrane transporter activity
J5X95_10260	COG0385	Bile acid
J5X95_10265	COG2819	hydrolase of the alpha beta superfamily
J5X95_10270	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5X95_10275	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5X95_10280	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
J5X95_10285	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
J5X95_10285	COG2207	Transcriptional regulator
J5X95_10290	COG3876	Protein conserved in bacteria
J5X95_10295	COG1472	Belongs to the glycosyl hydrolase 3 family
J5X95_10300	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
J5X95_10305	COG1263	PTS System
J5X95_10305	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J5X95_10315	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
J5X95_10320	COG1683	Conserved Protein
J5X95_10350	COG1595	DNA-templated transcription, initiation
J5X95_10355	COG5662	AntiSigma factor
J5X95_10360	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
J5X95_10365	COG4856	YbbR-like protein
J5X95_10415	COG1346	cytolysis
J5X95_10420	COG1380	Effector of murein hydrolase LrgA
J5X95_10425	COG1846	Transcriptional regulator
J5X95_10430	COG1113	amino acid transport
J5X95_10435	COG1011	Hydrolase
J5X95_10440	COG4585	Histidine kinase
J5X95_10445	COG2197	response regulator
J5X95_10450	COG1131	(ABC) transporter
J5X95_10490	COG0531	amino acid
J5X95_10505	COG0584	glycerophosphoryl diester phosphodiesterase
J5X95_10510	COG2271	Major facilitator Superfamily
J5X95_10520	COG2368	4-hydroxyphenylacetate
J5X95_10530	COG3409	Peptidoglycan-binding domain 1 protein
J5X95_10545	COG0371	Dehydrogenase
J5X95_10555	COG1183	phosphatidylcholine synthase activity
J5X95_10560	COG0586	Pfam SNARE associated Golgi protein
J5X95_10565	COG0688	phosphatidylethanolamine metabolic process
J5X95_10580	COG1301	dicarboxylic acid transport
J5X95_10585	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
J5X95_10590	COG0833	amino acid
J5X95_10595	COG2040	homocysteine
J5X95_10600	COG1115	amino acid carrier protein
J5X95_10605	COG2066	Belongs to the glutaminase family
J5X95_10610	COG4191	Histidine kinase
J5X95_10615	COG0784	Response regulator, receiver
J5X95_10630	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
J5X95_10635	COG0778	Nitroreductase
J5X95_10640	COG0346	lactoylglutathione lyase activity
J5X95_10645	COG2259	Doxx family
J5X95_10650	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
J5X95_10660	COG3773	Cell wall hydrolase
J5X95_10665	COG3540	Alkaline phosphatase
J5X95_10670	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
J5X95_10675	COG0805	protein transport
J5X95_10685	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
J5X95_10690	COG0477	Major facilitator Superfamily
J5X95_10695	COG1309	transcriptional regulator
J5X95_10700	COG0252	asparaginase activity
J5X95_10705	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
J5X95_10710	COG1405	negative regulation of cell septum assembly
J5X95_10710	COG3012	SEC-C Motif Domain Protein
J5X95_10715	COG0667	Aldo Keto reductase
J5X95_10725	COG1595	DNA-templated transcription, initiation
J5X95_10730	COG1595	DNA-templated transcription, initiation
J5X95_10735	COG1876	peptidase activity
J5X95_10740	COG0457	Tetratricopeptide repeat
J5X95_10745	COG1028	Short-chain dehydrogenase reductase Sdr
J5X95_10750	COG0366	Alpha amylase catalytic
J5X95_10755	COG0803	Belongs to the bacterial solute-binding protein 9 family
J5X95_10760	COG1121	(ABC) transporter
J5X95_10765	COG1108	ABC-type Mn2 Zn2 transport systems permease components
J5X95_10770	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
J5X95_10775	COG2310	stress, protein
J5X95_10780	COG2310	stress, protein
J5X95_10785	COG2310	stress, protein
J5X95_10790	COG0861	Integral membrane protein TerC family
J5X95_10800	COG3853	Toxic anion resistance protein (TelA)
J5X95_10805	COG0477	Major facilitator Superfamily
J5X95_10810	COG0517	IMP dehydrogenase activity
J5X95_10810	COG4175	Glycine betaine
J5X95_10815	COG4176	ABC-type proline glycine betaine transport system permease component
J5X95_10820	COG2113	Glycine betaine
J5X95_10825	COG1473	amidohydrolase
J5X95_10830	COG1288	antiporter activity
J5X95_10840	COG0366	Alpha amylase catalytic
J5X95_10850	COG2814	Major facilitator Superfamily
J5X95_10855	COG1846	Transcriptional regulator
J5X95_10860	COG1280	lysine exporter protein (LysE YggA)
J5X95_10865	COG3403	YqcI/YcgG family
J5X95_10870	COG1113	amino acid transport
J5X95_10875	COG3665	Urea carboxylase-associated protein
J5X95_10890	COG1660	Displays ATPase and GTPase activities
J5X95_10900	COG2271	Major facilitator Superfamily
J5X95_10905	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
J5X95_10910	COG3458	cephalosporin-C deacetylase activity
J5X95_10915	COG3541	Predicted nucleotidyltransferase
J5X95_10920	COG0506	proline dehydrogenase activity
J5X95_10925	COG1012	belongs to the aldehyde dehydrogenase family
J5X95_10930	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
J5X95_10935	COG2508	Transcriptional regulator
J5X95_10945	COG1587	Uroporphyrinogen-III synthase
J5X95_10945	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
J5X95_10950	COG2146	nitrite reductase [NAD(P)H] activity
J5X95_10955	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
J5X95_10960	COG0243	molybdopterin cofactor binding
J5X95_10965	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
J5X95_10970	COG2223	nitrite transmembrane transporter activity
J5X95_10975	COG0523	cobalamin synthesis protein
J5X95_10980	COG1063	alcohol dehydrogenase
J5X95_10985	COG1714	RDD family
J5X95_10995	COG2723	6-phospho-beta-galactosidase activity
J5X95_11005	COG3209	COG3209 Rhs family protein
J5X95_11010	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
J5X95_11015	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
J5X95_11020	COG1733	regulation of RNA biosynthetic process
J5X95_11025	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J5X95_11030	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J5X95_11035	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J5X95_11040	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
J5X95_11055	COG0697	spore germination
J5X95_11060	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
J5X95_11070	COG2364	Membrane
J5X95_11075	COG1126	abc transporter atp-binding protein
J5X95_11080	COG0765	amino acid transport
J5X95_11085	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J5X95_11090	COG0583	DNA-binding transcription factor activity
J5X95_11095	COG0163	prenyltransferase activity
J5X95_11100	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
J5X95_11120	COG3104	oligopeptide transport
J5X95_11125	COG5434	Belongs to the glycosyl hydrolase 28 family
J5X95_11135	COG0697	spore germination
J5X95_11145	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
J5X95_11150	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
J5X95_11155	COG0456	acetyltransferase
J5X95_11160	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J5X95_11165	COG0765	amino acid transport
J5X95_11170	COG1126	abc transporter atp-binding protein
J5X95_11175	COG1473	amidohydrolase
J5X95_11180	COG2079	MmgE PrpD family protein
J5X95_11185	COG1136	(ABC) transporter
J5X95_11190	COG0577	efflux transmembrane transporter activity
J5X95_11195	COG0745	RESPONSE REGULATOR receiver
J5X95_11200	COG3850	Histidine kinase
J5X95_11200	COG5002	protein histidine kinase activity
J5X95_11205	COG0457	Tetratricopeptide repeat
J5X95_11220	COG0527	aspartate kinase activity
J5X95_11225	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5X95_11230	COG4605	iron ion homeostasis
J5X95_11235	COG4604	ABC transporter, ATP-binding protein
J5X95_11240	COG4607	ABC-type enterochelin transport system periplasmic component
J5X95_11245	COG2814	Major facilitator Superfamily
J5X95_11250	COG1309	transcriptional regulator
J5X95_11255	COG0778	Nitroreductase
J5X95_11260	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
J5X95_11265	COG0640	Transcriptional regulator
J5X95_11270	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
J5X95_11275	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
J5X95_11280	COG1012	belongs to the aldehyde dehydrogenase family
J5X95_11285	COG4975	Glucose uptake
J5X95_11290	COG1028	Short-chain dehydrogenase reductase Sdr
J5X95_11295	COG4549	nuclear export factor GLE1
J5X95_11300	COG1276	copper resistance
J5X95_11300	COG2372	response to copper ion
J5X95_11305	COG1349	DNA-binding transcription factor activity
J5X95_11315	COG2213	PTS system mannitol-specific
J5X95_11320	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
J5X95_11330	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
J5X95_11340	COG0561	phosphatase activity
J5X95_11350	COG1914	H( )-stimulated, divalent metal cation uptake system
J5X95_11360	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
J5X95_11365	COG1984	allophanate hydrolase subunit 2
J5X95_11370	COG1414	Transcriptional regulator
J5X95_11375	COG2755	lipolytic protein G-D-S-L family
J5X95_11385	COG2329	Antibiotic biosynthesis monooxygenase
J5X95_11390	COG0768	penicillin binding
J5X95_11395	COG4989	oxidoreductase activity
J5X95_11400	COG3711	transcriptional antiterminator
J5X95_11405	COG0318	PFAM AMP-dependent synthetase and ligase
J5X95_11410	COG1028	Short-chain dehydrogenase reductase Sdr
J5X95_11415	COG1917	Cupin 2, conserved barrel domain protein
J5X95_11420	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
J5X95_11425	COG3871	stress protein (general stress protein 26)
J5X95_11435	COG2814	Major facilitator Superfamily
J5X95_11440	COG1522	sequence-specific DNA binding
J5X95_11445	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
J5X95_11445	COG0551	DNA topoisomerase type I activity
J5X95_11450	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
J5X95_11455	COG3706	GGDEF domain
J5X95_11460	COG5298	Protein conserved in bacteria
J5X95_11465	COG1215	transferase activity, transferring glycosyl groups
J5X95_11475	COG0531	amino acid
J5X95_11480	COG0494	nUDIX hydrolase
J5X95_11485	COG0028	Belongs to the TPP enzyme family
J5X95_11515	COG0457	Tetratricopeptide repeat
J5X95_11535	COG1914	H( )-stimulated, divalent metal cation uptake system
J5X95_11545	COG4876	unkown
J5X95_11555	COG2076	Multidrug Resistance protein
J5X95_11560	COG2217	Heavy metal translocating P-type atpase
J5X95_11565	COG3729	General stress protein
J5X95_11570	COG0662	Cupin 2, conserved barrel domain protein
J5X95_11575	COG2329	Antibiotic biosynthesis monooxygenase
J5X95_11580	COG3546	catalase activity
J5X95_11585	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
J5X95_11590	COG3290	protein histidine kinase activity
J5X95_11595	COG4565	transcriptional regulatory protein
J5X95_11600	COG1301	dicarboxylic acid transport
J5X95_11605	COG0628	permease
J5X95_11610	COG1131	(ABC) transporter
J5X95_11615	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
J5X95_11625	COG1960	acyl-CoA dehydrogenase activity
J5X95_11640	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
J5X95_11645	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
J5X95_11655	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
J5X95_11660	COG0513	Belongs to the DEAD box helicase family
J5X95_11665	COG3402	PFAM membrane-flanked domain
J5X95_11670	COG3428	Bacterial PH domain
J5X95_11675	COG0705	Rhomboid family
J5X95_11685	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
J5X95_11690	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
J5X95_11695	COG0864	Transcriptional regulator
J5X95_11700	COG2337	Toxic component of a toxin-antitoxin (TA) module
J5X95_11705	COG1366	Belongs to the anti-sigma-factor antagonist family
J5X95_11710	COG1366	Belongs to the anti-sigma-factor antagonist family
J5X95_11715	COG2172	sigma factor antagonist activity
J5X95_11720	COG2208	phosphoserine phosphatase activity
J5X95_11725	COG1366	Belongs to the anti-sigma-factor antagonist family
J5X95_11735	COG1191	sigma factor activity
J5X95_11740	COG2208	phosphoserine phosphatase activity
J5X95_11745	COG2183	response to ionizing radiation
J5X95_11800	COG1959	2 iron, 2 sulfur cluster binding
J5X95_11805	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
J5X95_11815	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
J5X95_11830	COG0457	Tetratricopeptide repeat
J5X95_11835	COG2249	NAD(P)H dehydrogenase (quinone) activity
J5X95_11840	COG0457	Tetratricopeptide repeat
J5X95_11860	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
J5X95_11865	COG0477	Major facilitator Superfamily
J5X95_11870	COG1846	Transcriptional regulator
J5X95_11880	COG2030	dehydratase
J5X95_11895	COG1959	2 iron, 2 sulfur cluster binding
J5X95_11900	COG2910	NAD(P)H-binding
J5X95_11905	COG1309	transcriptional regulator
J5X95_11910	COG0300	oxidoreductase activity
J5X95_11920	COG0604	alcohol dehydrogenase
J5X95_11930	COG3239	Fatty acid desaturase
J5X95_11940	COG1278	Cold shock
J5X95_11945	COG1329	Transcriptional regulator
J5X95_11950	COG1937	Protein conserved in bacteria
J5X95_11955	COG2210	Belongs to the sulfur carrier protein TusA family
J5X95_11960	COG1054	Belongs to the UPF0176 family
J5X95_11965	COG0425	Belongs to the sulfur carrier protein TusA family
J5X95_11965	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
J5X95_11970	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
J5X95_11970	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
J5X95_11975	COG0425	Belongs to the sulfur carrier protein TusA family
J5X95_11980	COG0730	response to heat
J5X95_11985	COG1794	racemase activity, acting on amino acids and derivatives
J5X95_12000	COG3621	Patatin-like phospholipase
J5X95_12010	COG0662	Cupin 2, conserved barrel domain protein
J5X95_12025	COG0277	FAD linked oxidase domain protein
J5X95_12050	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
J5X95_12075	COG1064	alcohol dehydrogenase
J5X95_12080	COG0789	Transcriptional regulator
J5X95_12090	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
J5X95_12105	COG2814	Major facilitator Superfamily
J5X95_12110	COG1309	transcriptional regulator
J5X95_12115	COG0697	spore germination
J5X95_12120	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
J5X95_12125	COG5577	PFAM Coat F domain
J5X95_12135	COG1063	alcohol dehydrogenase
J5X95_12140	COG5577	PFAM Coat F domain
J5X95_12150	COG4585	Histidine kinase
J5X95_12155	COG2197	response regulator
J5X95_12160	COG2409	Drug exporters of the RND superfamily
J5X95_12165	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
J5X95_12170	COG0488	(ABC) transporter
J5X95_12175	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
J5X95_12180	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
J5X95_12190	COG2814	Major facilitator Superfamily
J5X95_12195	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
J5X95_12205	COG0730	response to heat
J5X95_12210	COG0456	acetyltransferase
J5X95_12215	COG0789	Transcriptional regulator
J5X95_12215	COG4978	Transcriptional regulator
J5X95_12220	COG0697	spore germination
J5X95_12225	COG1051	belongs to the nudix hydrolase family
J5X95_12230	COG2226	methyltransferase
J5X95_12240	COG1802	Transcriptional regulator
J5X95_12245	COG1819	glycosyl
J5X95_12260	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
J5X95_12270	COG1388	LysM domain
J5X95_12275	COG2814	Major facilitator Superfamily
J5X95_12280	COG2188	Transcriptional regulator
J5X95_12285	COG2186	Transcriptional regulator
J5X95_12290	COG2807	transmembrane transport
J5X95_12295	COG2076	Multidrug Resistance protein
J5X95_12300	COG2076	Multidrug Resistance protein
J5X95_12305	COG1309	transcriptional regulator
J5X95_12310	COG0531	amino acid
J5X95_12320	COG3832	glyoxalase III activity
J5X95_12325	COG0604	alcohol dehydrogenase
J5X95_12330	COG2814	Major facilitator Superfamily
J5X95_12370	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
J5X95_12375	COG0802	atpase or kinase
J5X95_12380	COG1214	PFAM Peptidase M22, glycoprotease
J5X95_12385	COG0456	acetyltransferase
J5X95_12390	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
J5X95_12395	COG0488	(ABC) transporter
J5X95_12410	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
J5X95_12415	COG0805	protein transport
J5X95_12425	COG1266	CAAX protease self-immunity
J5X95_12450	COG0457	Tetratricopeptide repeat
J5X95_12455	COG1063	alcohol dehydrogenase
J5X95_12460	COG2211	Major facilitator Superfamily
J5X95_12465	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
J5X95_12475	COG1842	Phage shock protein A
J5X95_12480	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
J5X95_12485	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
J5X95_12490	COG4260	virion core protein, lumpy skin disease virus
J5X95_12495	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
J5X95_12495	COG2755	lipolytic protein G-D-S-L family
J5X95_12505	COG1595	DNA-templated transcription, initiation
J5X95_12510	COG1063	alcohol dehydrogenase
J5X95_12515	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
J5X95_12520	COG0823	Involved in the tonB-independent uptake of proteins
J5X95_12535	COG2132	Multicopper oxidase
J5X95_12540	COG1113	amino acid transport
J5X95_12545	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
J5X95_12550	COG0714	Associated with various cellular activities
J5X95_12555	COG1721	protein (some members contain a von Willebrand factor type A (vWA) domain
J5X95_12560	COG1305	Transglutaminase-like
J5X95_12580	COG2252	PERMEase
J5X95_12585	COG3064	Membrane
J5X95_12605	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
J5X95_12610	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
J5X95_12615	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
J5X95_12620	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
J5X95_12625	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
J5X95_12640	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
J5X95_12650	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
J5X95_12655	COG0138	bifunctional purine biosynthesis protein purh
J5X95_12660	COG0151	Belongs to the GarS family
J5X95_12670	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
J5X95_12675	COG1470	cell adhesion involved in biofilm formation
J5X95_12680	COG4496	protein, YerC YecD
J5X95_12685	COG0069	glutamate synthase activity
J5X95_12695	COG0210	DNA helicase
J5X95_12705	COG4851	CamS sex pheromone cAM373 precursor
J5X95_12710	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
J5X95_12715	COG1285	pathogenesis
J5X95_12720	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
J5X95_12740	COG1309	transcriptional regulator
J5X95_12745	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
J5X95_12750	COG1597	lipid kinase activity
J5X95_12755	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
J5X95_12765	COG1131	(ABC) transporter
J5X95_12795	COG5444	nuclease activity
J5X95_12805	COG5444	nuclease activity
J5X95_12830	COG3546	catalase activity
J5X95_12835	COG0454	-acetyltransferase
J5X95_12845	COG2323	membrane
J5X95_12850	COG2329	Antibiotic biosynthesis monooxygenase
J5X95_12855	COG0346	lactoylglutathione lyase activity
J5X95_12860	COG1366	Belongs to the anti-sigma-factor antagonist family
J5X95_12865	COG5583	Uncharacterized small protein (DUF2292)
J5X95_12870	COG0196	riboflavin kinase activity
J5X95_12875	COG0670	Belongs to the BI1 family
J5X95_12880	COG1846	Transcriptional regulator
J5X95_12885	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
J5X95_12895	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
J5X95_12895	COG2124	cytochrome p450
J5X95_12910	COG1131	(ABC) transporter
J5X95_12955	COG4106	trans-aconitate 2-methyltransferase activity
J5X95_12960	COG1368	sulfuric ester hydrolase activity
J5X95_12965	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
J5X95_12970	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J5X95_12975	COG1442	glycosyl transferase family 8
J5X95_12980	COG1216	Glycosyl transferase, family 2
J5X95_12985	COG1442	glycosyl transferase family 8
J5X95_12990	COG2223	nitrite transmembrane transporter activity
J5X95_12995	COG0531	amino acid
J5X95_13000	COG1012	belongs to the aldehyde dehydrogenase family
J5X95_13005	COG0840	transmembrane signaling receptor activity
J5X95_13010	COG1028	Short-chain dehydrogenase reductase Sdr
J5X95_13015	COG0463	Glycosyl transferase, family 2
J5X95_13015	COG0457	Tetratricopeptide repeat
J5X95_13020	COG0488	(ABC) transporter
J5X95_13025	COG0789	Transcriptional regulator
J5X95_13030	COG2814	Major facilitator Superfamily
J5X95_13035	COG0488	(ABC) transporter
J5X95_13040	COG0513	Belongs to the DEAD box helicase family
J5X95_13045	COG0456	acetyltransferase
J5X95_13050	COG2130	NADP-dependent
J5X95_13065	COG3866	Pectate lyase
J5X95_13070	COG0471	metal ion transport
J5X95_13090	COG2972	Histidine kinase
J5X95_13090	COG0745	RESPONSE REGULATOR receiver
J5X95_13095	COG3279	Response regulator of the LytR AlgR family
J5X95_13105	COG3764	Sortase (surface protein transpeptidase)
J5X95_13110	COG3290	protein histidine kinase activity
J5X95_13115	COG4565	transcriptional regulatory protein
J5X95_13120	COG3181	Tripartite tricarboxylate transporter family receptor
J5X95_13125	COG2851	Citrate transporter
J5X95_13130	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
J5X95_13135	COG4362	Belongs to the NOS family. Bacterial NOS oxygenase subfamily
J5X95_13145	COG2258	MOSC domain
J5X95_13165	COG0024	Methionine aminopeptidase
J5X95_13170	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J5X95_13170	COG1263	PTS System
J5X95_13180	COG1368	sulfuric ester hydrolase activity
J5X95_13190	COG0071	Belongs to the small heat shock protein (HSP20) family
J5X95_13205	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J5X95_13205	COG1263	PTS System
J5X95_13210	COG0366	Alpha amylase catalytic
J5X95_13215	COG2188	Transcriptional regulator
J5X95_13220	COG0778	Nitroreductase
J5X95_13235	COG0737	Belongs to the 5'-nucleotidase family
J5X95_13240	COG0693	protein deglycase activity
J5X95_13245	COG1609	Transcriptional regulator
J5X95_13260	COG2814	Major facilitator Superfamily
J5X95_13270	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
J5X95_13275	COG4980	gas vesicle protein
J5X95_13280	COG1295	ribonuclease BN
J5X95_13285	COG0477	Major facilitator Superfamily
J5X95_13290	COG0387	Pfam Sodium calcium exchanger
J5X95_13300	COG0668	transmembrane transport
J5X95_13305	COG0535	radical SAM domain protein
J5X95_13315	COG0726	polysaccharide deacetylase
J5X95_13320	COG2084	Dehydrogenase
J5X95_13330	COG0598	Magnesium transport protein CorA
J5X95_13335	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
J5X95_13340	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
J5X95_13350	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
J5X95_13355	COG4637	Psort location Cytoplasmic, score
J5X95_13360	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
J5X95_13365	COG0022	dehydrogenase e1 component
J5X95_13370	COG0508	dehydrogenase complex catalyzes the overall conversion of
J5X95_13375	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
J5X95_13380	COG3284	Transcriptional regulator
J5X95_13390	COG1486	melibiose metabolic process
J5X95_13395	COG1737	Transcriptional regulator
J5X95_13400	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J5X95_13400	COG1263	PTS System
J5X95_13405	COG5434	Belongs to the glycosyl hydrolase 28 family
J5X95_13410	COG1132	(ABC) transporter
J5X95_13415	COG1132	(ABC) transporter
J5X95_13420	COG2259	Doxx family
J5X95_13425	COG2514	catechol 2,3-dioxygenase activity
J5X95_13435	COG1695	Transcriptional regulator
J5X95_13440	COG2249	NAD(P)H dehydrogenase (quinone) activity
J5X95_13445	COG3936	Protein involved in polysaccharide intercellular adhesin (PIA) synthesis biofilm formation
J5X95_13450	COG3848	Pyruvate phosphate dikinase
J5X95_13450	COG0574	Belongs to the PEP-utilizing enzyme family
J5X95_13455	COG2732	(Barnase) inhibitor
J5X95_13460	COG2318	DinB family
J5X95_13465	COG2814	Major facilitator Superfamily
J5X95_13470	COG1846	Transcriptional regulator
J5X95_13475	COG0392	lysyltransferase activity
J5X95_13475	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
J5X95_13480	COG0384	phenazine biosynthesis protein PhzF
J5X95_13485	COG0778	Nitroreductase
J5X95_13500	COG1090	epimerase
J5X95_13515	COG2814	Major facilitator Superfamily
J5X95_13525	COG3591	Belongs to the peptidase S1B family
J5X95_13540	COG3103	Sh3 type 3 domain protein
J5X95_13545	COG5658	integral membrane protein
J5X95_13550	COG0596	Alpha beta hydrolase
J5X95_13555	COG0463	Glycosyl transferase, family 2
J5X95_13560	COG4485	Bacterial membrane protein, YfhO
J5X95_13565	COG1988	membrane-bound metal-dependent
J5X95_13570	COG1194	a g-specific adenine glycosylase
J5X95_13580	COG1028	Short-chain dehydrogenase reductase Sdr
J5X95_13600	COG1132	(ABC) transporter
J5X95_13605	COG4129	membrane
J5X95_13615	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
J5X95_13620	COG0735	belongs to the Fur family
J5X95_13730	COG1757	Na H antiporter
J5X95_13735	COG3340	Belongs to the peptidase S51 family
J5X95_13745	COG0277	FAD linked oxidase domain protein
J5X95_13755	COG0747	negative chemotaxis
J5X95_13760	COG0601	transmembrane transport
J5X95_13765	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J5X95_13770	COG0444	Belongs to the ABC transporter superfamily
J5X95_13775	COG4608	Belongs to the ABC transporter superfamily
J5X95_13780	COG0753	catalase activity
J5X95_13790	COG1116	anion transmembrane transporter activity
J5X95_13795	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
J5X95_13800	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
J5X95_13820	COG1476	TRANSCRIPTIONal
J5X95_13830	COG3382	B3 4 domain protein
J5X95_13835	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
J5X95_13845	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
J5X95_13850	COG0789	Transcriptional regulator
J5X95_13855	COG1664	Polymer-forming cytoskeletal
J5X95_13860	COG1664	Polymer-forming cytoskeletal
J5X95_13865	COG2766	serine protein kinase
J5X95_13875	COG1846	Transcriptional regulator
J5X95_13880	COG1566	PFAM secretion protein HlyD family protein
J5X95_13885	COG2814	Major facilitator Superfamily
J5X95_13890	COG0655	NAD(P)H dehydrogenase (quinone) activity
J5X95_13905	COG1725	Transcriptional regulator
J5X95_13910	COG1131	(ABC) transporter
J5X95_13915	COG1131	(ABC) transporter
J5X95_13920	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
J5X95_13925	COG1278	Cold shock
J5X95_13930	COG1464	Belongs to the NlpA lipoprotein family
J5X95_13935	COG3706	GGDEF domain
J5X95_13940	COG1823	symporter activity
J5X95_13960	COG5577	PFAM Coat F domain
J5X95_13965	COG1525	nuclease
J5X95_13965	COG4085	toxin activity
J5X95_13965	COG0737	Belongs to the 5'-nucleotidase family
J5X95_13970	COG3764	Sortase (surface protein transpeptidase)
J5X95_13975	COG0564	pseudouridine synthase activity
J5X95_13985	COG0517	IMP dehydrogenase activity
J5X95_13990	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
J5X95_13995	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
J5X95_13995	COG3153	acetyltransferase
J5X95_14000	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
J5X95_14005	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
J5X95_14010	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
J5X95_14020	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
J5X95_14025	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
J5X95_14030	COG2203	Gaf domain
J5X95_14030	COG4585	Histidine kinase
J5X95_14035	COG2197	response regulator
J5X95_14040	COG0431	NADPH-dependent FMN reductase
J5X95_14055	COG0791	NLP P60 protein
J5X95_14055	COG1388	LysM domain
J5X95_14060	COG1959	2 iron, 2 sulfur cluster binding
J5X95_14065	COG0668	transmembrane transport
J5X95_14070	COG2719	SpoVR family
J5X95_14075	COG1785	Belongs to the alkaline phosphatase family
J5X95_14080	COG0791	NLP P60 protein
J5X95_14080	COG1388	LysM domain
J5X95_14085	COG0583	DNA-binding transcription factor activity
J5X95_14090	COG0372	Belongs to the citrate synthase family
J5X95_14095	COG1028	Short-chain dehydrogenase reductase Sdr
J5X95_14100	COG0531	amino acid
J5X95_14105	COG0733	neurotransmitter:sodium symporter activity
J5X95_14120	COG1595	DNA-templated transcription, initiation
J5X95_14125	COG0204	Acyl-transferase
J5X95_14130	COG1253	flavin adenine dinucleotide binding
J5X95_14135	COG0789	Transcriptional regulator
J5X95_14140	COG0436	Aminotransferase
J5X95_14145	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
J5X95_14150	COG1253	flavin adenine dinucleotide binding
J5X95_14155	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
J5X95_14160	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
J5X95_14165	COG0584	glycerophosphoryl diester phosphodiesterase
J5X95_14175	COG0668	transmembrane transport
J5X95_14180	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
J5X95_14185	COG0726	polysaccharide deacetylase
J5X95_14190	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
J5X95_14195	COG3226	Transcriptional regulator
J5X95_14205	COG0589	response to stress
J5X95_14210	COG1132	(ABC) transporter
J5X95_14215	COG1132	(ABC) transporter
J5X95_14220	COG0702	epimerase
J5X95_14235	COG0189	ligase activity
J5X95_14240	COG0189	ligase activity
J5X95_14255	COG4335	DNA alkylation repair
J5X95_14260	COG0561	phosphatase activity
J5X95_14265	COG0635	Involved in the biosynthesis of porphyrin-containing compound
J5X95_14275	COG0475	glutathione-regulated potassium exporter activity
J5X95_14280	COG0490	domain, Protein
J5X95_14290	COG1024	Enoyl-CoA hydratase
J5X95_14300	COG4152	abc transporter atp-binding protein
J5X95_14305	COG1668	transmembrane transport
J5X95_14310	COG0420	3'-5' exonuclease activity
J5X95_14315	COG4717	serine-type aminopeptidase activity
J5X95_14335	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
J5X95_14370	COG4980	gas vesicle protein
J5X95_14385	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
J5X95_14390	COG0537	adenosine 5'-monophosphoramidase activity
J5X95_14395	COG1131	(ABC) transporter
J5X95_14400	COG4473	ABC transporter
J5X95_14410	COG1473	amidohydrolase
J5X95_14415	COG3069	C4-dicarboxylate transmembrane transporter activity
J5X95_14420	COG2329	Antibiotic biosynthesis monooxygenase
J5X95_14425	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
J5X95_14435	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
J5X95_14440	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
J5X95_14445	COG1309	transcriptional regulator
J5X95_14450	COG1511	domain protein
J5X95_14455	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
J5X95_14465	COG1363	Peptidase, m42
J5X95_14470	COG1301	dicarboxylic acid transport
J5X95_14480	COG1234	tRNA 3'-trailer cleavage
J5X95_14485	COG0095	Lipoate-protein ligase
J5X95_14490	COG0702	epimerase
J5X95_14495	COG0318	PFAM AMP-dependent synthetase and ligase
J5X95_14505	COG0501	Belongs to the peptidase M48B family
J5X95_14510	COG1404	Belongs to the peptidase S8 family
J5X95_14515	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
J5X95_14520	COG0406	alpha-ribazole phosphatase activity
J5X95_14525	COG0183	Belongs to the thiolase family
J5X95_14530	COG0318	PFAM AMP-dependent synthetase and ligase
J5X95_14535	COG1268	BioY protein
J5X95_14540	COG0840	transmembrane signaling receptor activity
J5X95_14545	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
J5X95_14545	COG0723	plastoquinol--plastocyanin reductase activity
J5X95_14550	COG1028	Short-chain dehydrogenase reductase Sdr
J5X95_14560	COG4903	ComK protein
J5X95_14570	COG5646	InterPro IPR014922
J5X95_14595	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
J5X95_14610	COG0398	Pfam SNARE associated Golgi protein
J5X95_14615	COG0681	Belongs to the peptidase S26 family
J5X95_14620	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
J5X95_14625	COG1846	Transcriptional regulator
J5X95_14630	COG3180	Ammonia monooxygenase
J5X95_14635	COG2814	Major facilitator Superfamily
J5X95_14645	COG1633	Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME)
J5X95_14650	COG2323	membrane
J5X95_14665	COG0420	3'-5' exonuclease activity
J5X95_14670	COG0419	ATPase involved in DNA repair
J5X95_14675	COG1403	HNH endonuclease
J5X95_14715	COG0179	Fumarylacetoacetate (FAA) hydrolase
J5X95_14730	COG0367	asparagine synthase
J5X95_14735	COG1562	ergosterol biosynthetic process
J5X95_14740	COG0534	Mate efflux family protein
J5X95_14745	COG1917	Cupin 2, conserved barrel domain protein
J5X95_14745	COG2207	Transcriptional regulator
J5X95_14750	COG2318	DinB family
J5X95_14755	COG1279	arginine transmembrane transporter activity
J5X95_14760	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
J5X95_14765	COG1357	PFAM Pentapeptide repeats (8 copies)
J5X95_14770	COG2153	protein acetylation
J5X95_14775	COG0646	methionine synthase
J5X95_14775	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
J5X95_14785	COG2996	Protein conserved in bacteria
J5X95_14790	COG1744	ABC transporter substrate-binding protein PnrA-like
J5X95_14795	COG0840	transmembrane signaling receptor activity
J5X95_14800	COG2124	cytochrome p450
J5X95_14810	COG1307	EDD domain protein, DegV family
J5X95_14815	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
J5X95_14835	COG0561	phosphatase activity
J5X95_14840	COG1073	alpha beta
J5X95_14845	COG2151	metal-sulfur cluster biosynthetic enzyme
J5X95_14855	COG0277	FAD linked oxidase domain protein
J5X95_14870	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
J5X95_14880	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
J5X95_14885	COG0505	Belongs to the CarA family
J5X95_14890	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
J5X95_14895	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
J5X95_14910	COG2267	carboxylic ester hydrolase activity
J5X95_14920	COG1744	ABC transporter substrate-binding protein PnrA-like
J5X95_14935	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
J5X95_14940	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
J5X95_14945	COG5504	Zn-dependent protease
J5X95_14950	COG0444	Belongs to the ABC transporter superfamily
J5X95_14955	COG4608	Belongs to the ABC transporter superfamily
J5X95_14965	COG0601	transmembrane transport
J5X95_14970	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J5X95_14980	COG0180	Tryptophanyl-tRNA synthetase
J5X95_14985	COG4166	transmembrane transport
J5X95_14990	COG0601	transmembrane transport
J5X95_14995	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J5X95_15000	COG0444	Belongs to the ABC transporter superfamily
J5X95_15005	COG4608	Belongs to the ABC transporter superfamily
J5X95_15015	COG0456	acetyltransferase
J5X95_15020	COG1393	Belongs to the ArsC family
J5X95_15025	COG0861	Integral membrane protein TerC family
J5X95_15035	COG4862	establishment of competence for transformation
J5X95_15040	COG4469	Competence protein
J5X95_15045	COG1164	Oligoendopeptidase f
J5X95_15055	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
J5X95_15060	COG2346	COG2346, Truncated hemoglobins
J5X95_15065	COG0741	lytic transglycosylase activity
J5X95_15070	COG4116	CYTH
J5X95_15080	COG2357	RelA SpoT domain protein
J5X95_15085	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
J5X95_15090	COG0564	pseudouridine synthase activity
J5X95_15100	COG0475	glutathione-regulated potassium exporter activity
J5X95_15100	COG0569	domain protein
J5X95_15105	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
J5X95_15110	COG0352	thiamine-phosphate diphosphorylase activity
J5X95_15115	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
J5X95_15120	COG2104	thiamine diphosphate biosynthetic process
J5X95_15130	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
J5X95_15135	COG0351	phosphomethylpyrimidine kinase
J5X95_15140	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
J5X95_15195	COG0210	DNA helicase
J5X95_15215	COG1131	(ABC) transporter
J5X95_15225	COG2153	protein acetylation
J5X95_15235	COG2382	esterase
J5X95_15240	COG0626	cystathionine gamma-synthase activity
J5X95_15245	COG0626	cystathionine gamma-synthase activity
J5X95_15260	COG5444	nuclease activity
J5X95_15270	COG0346	lactoylglutathione lyase activity
J5X95_15275	COG2367	Beta-lactamase
J5X95_15280	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
J5X95_15285	COG2814	Major facilitator Superfamily
J5X95_15290	COG1846	Transcriptional regulator
J5X95_15300	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
J5X95_15305	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
J5X95_15310	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
J5X95_15315	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
J5X95_15315	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
J5X95_15320	COG1447	Phosphotransferase system cellobiose-specific component IIA
J5X95_15350	COG1285	pathogenesis
J5X95_15365	COG2205	protein histidine kinase activity
J5X95_15375	COG3383	formate dehydrogenase (NAD+) activity
J5X95_15380	COG2427	Protein of unknown function (DUF1641)
J5X95_15385	COG2124	cytochrome p450
J5X95_15390	COG1819	glycosyl
J5X95_15400	COG1587	Uroporphyrinogen-III synthase
J5X95_15405	COG0390	transport system, permease component
J5X95_15410	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
J5X95_15415	COG0697	spore germination
J5X95_15420	COG4297	protein containing double-stranded beta helix domain
J5X95_15430	COG1252	NADH dehydrogenase
J5X95_15440	COG2211	Major facilitator Superfamily
J5X95_15445	COG1609	Transcriptional regulator
J5X95_15450	COG0246	Mannitol dehydrogenase
J5X95_15455	COG2721	sulfolactate sulfo-lyase activity
J5X95_15460	COG0730	response to heat
J5X95_15465	COG2318	DinB family
J5X95_15470	COG0457	Tetratricopeptide repeat
J5X95_15480	COG1388	LysM domain
J5X95_15480	COG3409	Peptidoglycan-binding domain 1 protein
J5X95_15480	COG5632	N-Acetylmuramoyl-L-alanine amidase
J5X95_15490	COG4195	phage-related replication protein
J5X95_15495	COG2856	Zn peptidase
J5X95_15500	COG1396	sequence-specific DNA binding
J5X95_15510	COG1522	sequence-specific DNA binding
J5X95_15515	COG1484	DNA-dependent DNA replication
J5X95_15535	COG1595	DNA-templated transcription, initiation
J5X95_15540	COG5484	DNA packaging
J5X95_15540	COG3728	DNA packaging
J5X95_15545	COG1783	phage Terminase large subunit
J5X95_15550	COG5518	Phage portal protein
J5X95_15555	COG0338	D12 class N6 adenine-specific DNA methyltransferase
J5X95_15560	COG4653	Phage capsid family
J5X95_15610	COG5412	phage tail tape measure protein
J5X95_15610	COG3953	SLT domain
J5X95_15610	COG5412	phage tail tape measure protein
J5X95_15610	COG3953	SLT domain
J5X95_15610	COG5412	phage tail tape measure protein
J5X95_15610	COG3953	SLT domain
J5X95_15615	COG1652	LysM domain
J5X95_15620	COG4193	domain, Protein
J5X95_15630	COG3628	GPW Gp25 family protein
J5X95_15635	COG3299	homolog of phage Mu protein gp47
J5X95_15640	COG3778	Protein conserved in bacteria
J5X95_15680	COG3409	Peptidoglycan-binding domain 1 protein
J5X95_15680	COG5632	N-Acetylmuramoyl-L-alanine amidase
J5X95_15695	COG0306	phosphate transporter
J5X95_15700	COG1392	Phosphate transport regulator
J5X95_15705	COG0531	amino acid
J5X95_15710	COG0346	lactoylglutathione lyase activity
J5X95_15715	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
J5X95_15720	COG0463	Glycosyl transferase, family 2
J5X95_15730	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
J5X95_15735	COG0477	Major facilitator Superfamily
J5X95_15740	COG2362	D-Aminopeptidase
J5X95_15745	COG0601	transmembrane transport
J5X95_15750	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J5X95_15755	COG0444	Belongs to the ABC transporter superfamily
J5X95_15760	COG4166	transmembrane transport
J5X95_15765	COG1619	proteins homologs of microcin C7 resistance protein MccF
J5X95_15770	COG4948	Mandelate Racemase Muconate Lactonizing
J5X95_15775	COG0791	NLP P60 protein
J5X95_15780	COG4608	Belongs to the ABC transporter superfamily
J5X95_15785	COG2706	6-phosphogluconolactonase activity
J5X95_15790	COG1834	amidinotransferase
J5X95_15795	COG1607	acyl-coa hydrolase
J5X95_15800	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
J5X95_15805	COG2076	Multidrug Resistance protein
J5X95_15810	COG2076	Multidrug Resistance protein
J5X95_15815	COG0788	formyltetrahydrofolate deformylase activity
J5X95_15820	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
J5X95_15830	COG1764	response to oxidative stress
J5X95_15835	COG1846	Transcriptional regulator
J5X95_15840	COG1764	response to oxidative stress
J5X95_15855	COG0463	Glycosyl transferase, family 2
J5X95_15855	COG0457	Tetratricopeptide repeat
J5X95_15865	COG2814	Major facilitator Superfamily
J5X95_15870	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
J5X95_15880	COG1404	Belongs to the peptidase S8 family
J5X95_15885	COG1366	Belongs to the anti-sigma-factor antagonist family
J5X95_15890	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
J5X95_15895	COG1122	ATPase activity
J5X95_15900	COG4721	ABC-type cobalt transport system, permease component
J5X95_15905	COG1388	LysM domain
J5X95_15905	COG3858	chitin binding
J5X95_15915	COG2239	Acts as a magnesium transporter
J5X95_15920	COG0789	Transcriptional regulator
J5X95_15935	COG1846	Transcriptional regulator
J5X95_15940	COG0726	polysaccharide deacetylase
J5X95_15945	COG1793	dna ligase
J5X95_15945	COG3285	dna ligase
J5X95_15950	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
J5X95_15955	COG0586	Pfam SNARE associated Golgi protein
J5X95_15960	COG0861	Integral membrane protein TerC family
J5X95_15965	COG1191	sigma factor activity
J5X95_15990	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
J5X95_15995	COG2323	membrane
J5X95_16005	COG3594	Acyltransferase
J5X95_16010	COG5002	protein histidine kinase activity
J5X95_16015	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
J5X95_16030	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
J5X95_16035	COG0436	Aminotransferase
J5X95_16065	COG3852	Histidine kinase
J5X95_16070	COG1846	Transcriptional regulator
J5X95_16075	COG1360	Flagellar Motor Protein
J5X95_16080	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
J5X95_16085	COG0542	response to heat
J5X95_16090	COG3949	Membrane
J5X95_16105	COG0720	synthase
J5X95_16110	COG0602	queuosine metabolic process
J5X95_16125	COG1733	regulation of RNA biosynthetic process
J5X95_16130	COG1028	Short-chain dehydrogenase reductase Sdr
J5X95_16140	COG1388	LysM domain
J5X95_16140	COG4641	Protein conserved in bacteria
J5X95_16145	COG1388	LysM domain
J5X95_16150	COG3858	chitin binding
J5X95_16160	COG4873	Protein conserved in bacteria
J5X95_16170	COG3773	Cell wall hydrolase
J5X95_16175	COG2244	polysaccharide biosynthetic process
J5X95_16180	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
J5X95_16185	COG2217	Heavy metal translocating P-type atpase
J5X95_16190	COG0006	proline dipeptidase activity
J5X95_16195	COG1609	Transcriptional regulator
J5X95_16200	COG3711	transcriptional antiterminator
J5X95_16205	COG2190	(PTS) system
J5X95_16205	COG1263	PTS System
J5X95_16205	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J5X95_16210	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
J5X95_16215	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
J5X95_16225	COG1533	DNA photolyase activity
J5X95_16230	COG0840	transmembrane signaling receptor activity
J5X95_16235	COG2084	Dehydrogenase
J5X95_16240	COG2340	Cysteine-rich secretory protein family
J5X95_16245	COG0768	penicillin binding
J5X95_16250	COG4191	Histidine kinase
J5X95_16255	COG0436	Aminotransferase
J5X95_16265	COG0835	chemotaxis
J5X95_16265	COG0784	Response regulator, receiver
J5X95_16275	COG2814	Major facilitator Superfamily
J5X95_16280	COG1376	ErfK ybiS ycfS ynhG family protein
J5X95_16285	COG1408	metallophosphoesterase
J5X95_16290	COG1028	Short-chain dehydrogenase reductase Sdr
J5X95_16300	COG2200	EAL domain
J5X95_16305	COG4703	Protein of unknown function (DUF1797)
J5X95_16310	COG1978	Selenoprotein B, glycine betaine sarcosine D-proline reductase family
J5X95_16320	COG0517	IMP dehydrogenase activity
J5X95_16325	COG0583	DNA-binding transcription factor activity
J5X95_16330	COG0716	FMN binding
J5X95_16340	COG0716	FMN binding
J5X95_16360	COG0668	transmembrane transport
J5X95_16365	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
J5X95_16385	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
J5X95_16390	COG0303	'Molybdopterin
J5X95_16395	COG1763	Mo-molybdopterin cofactor biosynthetic process
J5X95_16400	COG0314	molybdopterin synthase activity
J5X95_16405	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
J5X95_16415	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J5X95_16420	COG1136	(ABC) transporter
J5X95_16425	COG0577	efflux transmembrane transporter activity
J5X95_16430	COG1349	DNA-binding transcription factor activity
J5X95_16435	COG1105	Belongs to the carbohydrate kinase PfkB family
J5X95_16440	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J5X95_16440	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J5X95_16440	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
J5X95_16445	COG0681	Belongs to the peptidase S26 family
J5X95_16455	COG0488	(ABC) transporter
J5X95_16460	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
J5X95_16465	COG2309	aminopeptidase activity
J5X95_16475	COG1077	Cell shape determining protein MreB Mrl
J5X95_16480	COG2002	toxin-antitoxin pair type II binding
J5X95_16485	COG3852	Histidine kinase
J5X95_16490	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
J5X95_16490	COG2105	PFAM AIG2 family protein
J5X95_16495	COG0569	domain protein
J5X95_16505	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
J5X95_16515	COG0561	phosphatase activity
J5X95_16520	COG0242	peptide deformylase activity
J5X95_16530	COG0497	DNA recombination
J5X95_16540	COG4221	oxidoreductase activity
J5X95_16540	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J5X95_16540	COG1028	Short-chain dehydrogenase reductase Sdr
J5X95_16540	COG3321	synthase
J5X95_16545	COG3321	synthase
J5X95_16545	COG4221	oxidoreductase activity
J5X95_16545	COG0300	oxidoreductase activity
J5X95_16545	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J5X95_16550	COG1028	Short-chain dehydrogenase reductase Sdr
J5X95_16550	COG4221	oxidoreductase activity
J5X95_16550	COG3321	synthase
J5X95_16550	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J5X95_16555	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J5X95_16555	COG0300	oxidoreductase activity
J5X95_16555	COG3321	synthase
J5X95_16555	COG4221	oxidoreductase activity
J5X95_16560	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J5X95_16560	COG0300	oxidoreductase activity
J5X95_16560	COG4221	oxidoreductase activity
J5X95_16560	COG3321	synthase
J5X95_16565	COG4221	oxidoreductase activity
J5X95_16565	COG3321	synthase
J5X95_16565	COG0300	oxidoreductase activity
J5X95_16565	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J5X95_16570	COG4221	oxidoreductase activity
J5X95_16570	COG1028	Short-chain dehydrogenase reductase Sdr
J5X95_16570	COG3321	synthase
J5X95_16570	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J5X95_16575	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
J5X95_16580	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
J5X95_16585	COG0022	dehydrogenase e1 component
J5X95_16590	COG0508	dehydrogenase complex catalyzes the overall conversion of
J5X95_16595	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
J5X95_16600	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
J5X95_16615	COG1982	Orn Lys Arg decarboxylase major
J5X95_16635	COG0483	inositol monophosphate 1-phosphatase activity
J5X95_16645	COG3227	Zinc metalloprotease (Elastase)
J5X95_16670	COG1217	gtp-binding protein TYPA
J5X95_16680	COG4896	Protein conserved in bacteria
J5X95_16690	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
J5X95_16695	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
J5X95_16700	COG2066	Belongs to the glutaminase family
J5X95_16710	COG0772	Belongs to the SEDS family
J5X95_16715	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
J5X95_16730	COG2010	Cytochrome c
J5X95_16730	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
J5X95_16735	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
J5X95_16740	COG1845	cytochrome c oxidase, subunit III
J5X95_16745	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
J5X95_16750	COG3336	cytochrome c oxidase
J5X95_16760	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
J5X95_16765	COG2340	Cysteine-rich secretory protein family
J5X95_16780	COG3679	Belongs to the UPF0342 family
J5X95_16790	COG0742	ribosomal rna small subunit methyltransferase
J5X95_16800	COG3314	Sporulation integral membrane protein YlbJ
J5X95_16805	COG1752	Esterase of the alpha-beta hydrolase superfamily
J5X95_16810	COG3480	Lon protease (S16) C-terminal proteolytic domain
J5X95_16820	COG1399	metal-binding, possibly nucleic acid-binding protein
J5X95_16840	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
J5X95_16860	COG4839	cell division protein FtsL
J5X95_16865	COG0768	penicillin binding
J5X95_16870	COG0768	penicillin binding
J5X95_16890	COG0772	Belongs to the SEDS family
J5X95_16905	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
J5X95_16910	COG0849	cell division
J5X95_16915	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
J5X95_16920	COG1404	Belongs to the peptidase S8 family
J5X95_16920	COG4412	M6 family metalloprotease domain protein
J5X95_16930	COG1191	sigma factor activity
J5X95_16935	COG1191	sigma factor activity
J5X95_16940	COG1119	ATPase activity
J5X95_16945	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
J5X95_16950	COG1873	PFAM PRC-barrel domain
J5X95_16955	COG1496	oxidoreductase activity
J5X95_16960	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
J5X95_16970	COG0762	integral membrane protein
J5X95_16975	COG2302	S4 RNA-binding domain
J5X95_16980	COG3599	regulation of cell shape
J5X95_16985	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
J5X95_16990	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
J5X95_17000	COG0564	pseudouridine synthase activity
J5X95_17010	COG2233	PERMEase
J5X95_17020	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
J5X95_17025	COG0505	Belongs to the CarA family
J5X95_17030	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
J5X95_17045	COG0284	orotidine-5'-phosphate decarboxylase activity
J5X95_17050	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
J5X95_17060	COG0306	phosphate transporter
J5X95_17075	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
J5X95_17080	COG2138	Cobalamin (vitamin B12) biosynthesis CbiX protein
J5X95_17085	COG1648	precorrin-2 dehydrogenase activity
J5X95_17100	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
J5X95_17105	COG1561	YicC-like family, N-terminal region
J5X95_17115	COG0194	GDP metabolic process
J5X95_17125	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
J5X95_17130	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
J5X95_17135	COG0242	peptide deformylase activity
J5X95_17145	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
J5X95_17145	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
J5X95_17155	COG0631	protein serine/threonine phosphatase activity
J5X95_17160	COG0515	serine threonine protein kinase
J5X95_17160	COG2815	serine threonine protein kinase
J5X95_17170	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
J5X95_17175	COG1564	THIamine pyrophosphokinase
J5X95_17190	COG1302	Protein conserved in bacteria
J5X95_17195	COG1461	Dihydroxyacetone kinase
J5X95_17200	COG1760	l-serine dehydratase
J5X95_17205	COG1760	l-serine dehydratase
J5X95_17210	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
J5X95_17225	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
J5X95_17230	COG1028	Short-chain dehydrogenase reductase Sdr
J5X95_17245	COG1196	nuclear chromosome segregation
J5X95_17250	COG0552	protein localization to endoplasmic reticulum
J5X95_17265	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
J5X95_17275	COG1837	Belongs to the UPF0109 family
J5X95_17300	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
J5X95_17315	COG2257	FlhB HrpN YscU SpaS Family
J5X95_17325	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
J5X95_17330	COG0758	DNA mediated transformation
J5X95_17335	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
J5X95_17345	COG4974	Belongs to the 'phage' integrase family
J5X95_17365	COG1815	bacterial-type flagellum-dependent cell motility
J5X95_17370	COG1558	bacterial-type flagellum-dependent cell motility
J5X95_17375	COG1677	Flagellar hook-basal body complex protein FliE
J5X95_17380	COG1766	The M ring may be actively involved in energy transduction
J5X95_17385	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
J5X95_17390	COG1317	bacterial-type flagellum organization
J5X95_17395	COG1157	protein secretion by the type III secretion system
J5X95_17400	COG2882	bacterial-type flagellum organization
J5X95_17405	COG3334	PFAM MgtE intracellular
J5X95_17410	COG3144	bacterial-type flagellum assembly
J5X95_17415	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
J5X95_17420	COG4786	Flagellar basal body rod
J5X95_17425	COG1582	Flagellar protein (FlbD)
J5X95_17430	COG1580	Controls the rotational direction of flagella during chemotaxis
J5X95_17435	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
J5X95_17440	COG1776	CheC inhibitor of MCP methylation
J5X95_17440	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
J5X95_17445	COG2201	protein-glutamate methylesterase activity
J5X95_17450	COG3190	flagellar
J5X95_17455	COG1338	Plays a role in the flagellum-specific transport system
J5X95_17460	COG1987	bacterial-type flagellum assembly
J5X95_17465	COG1684	flagellar biosynthetic protein fliR
J5X95_17470	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
J5X95_17475	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
J5X95_17480	COG1419	protein localization to endoplasmic reticulum
J5X95_17485	COG0455	bacterial-type flagellum organization
J5X95_17490	COG2201	protein-glutamate methylesterase activity
J5X95_17495	COG0643	Histidine kinase
J5X95_17495	COG2198	Histidine kinase
J5X95_17500	COG0835	chemotaxis
J5X95_17505	COG1776	CheC inhibitor of MCP methylation
J5X95_17515	COG1191	sigma factor activity
J5X95_17545	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
J5X95_17550	COG4589	Belongs to the CDS family
J5X95_17560	COG0750	zinc metalloprotease
J5X95_17570	COG2176	DNA-directed DNA polymerase activity
J5X95_17580	COG0195	Participates in both transcription termination and antitermination
J5X95_17585	COG2740	Nucleic-acid-binding protein implicated in transcription termination
J5X95_17590	COG1358	cellular component organization or biogenesis
J5X95_17600	COG1550	Protein conserved in bacteria
J5X95_17615	COG0196	riboflavin kinase activity
J5X95_17630	COG0726	polysaccharide deacetylase
J5X95_17635	COG0612	Peptidase, M16
J5X95_17640	COG1873	PFAM PRC-barrel domain
J5X95_17645	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
J5X95_17650	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
J5X95_17655	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
J5X95_17660	COG0527	aspartate kinase activity
J5X95_17670	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
J5X95_17675	COG0740	serine-type endopeptidase activity
J5X95_17685	COG1674	ftsk spoiiie
J5X95_17685	COG4980	gas vesicle protein
J5X95_17690	COG2188	Transcriptional regulator
J5X95_17695	COG2814	Major facilitator Superfamily
J5X95_17700	COG1846	Transcriptional regulator
J5X95_17705	COG2409	Drug exporters of the RND superfamily
J5X95_17705	COG1033	growth of symbiont in host cell
J5X95_17710	COG0612	Peptidase, M16
J5X95_17715	COG0612	Peptidase, M16
J5X95_17720	COG0300	oxidoreductase activity
J5X95_17735	COG1426	Protein conserved in bacteria
J5X95_17740	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
J5X95_17755	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
J5X95_17765	COG1692	metallophosphoesterase
J5X95_17770	COG2359	stage V sporulation protein S
J5X95_17790	COG4550	Control of competence regulator ComK, YlbF/YmcA
J5X95_17835	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J5X95_17840	COG3425	synthase
J5X95_17845	COG1024	Enoyl-CoA hydratase
J5X95_17850	COG1024	Enoyl-CoA hydratase
J5X95_17855	COG3321	synthase
J5X95_17855	COG1028	Short-chain dehydrogenase reductase Sdr
J5X95_17855	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J5X95_17855	COG0318	PFAM AMP-dependent synthetase and ligase
J5X95_17855	COG0300	oxidoreductase activity
J5X95_17860	COG4221	oxidoreductase activity
J5X95_17860	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J5X95_17860	COG3321	synthase
J5X95_17860	COG0300	oxidoreductase activity
J5X95_17865	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J5X95_17865	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J5X95_17865	COG3321	synthase
J5X95_17865	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J5X95_17865	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J5X95_17865	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J5X95_17865	COG1028	Short-chain dehydrogenase reductase Sdr
J5X95_17865	COG1028	Short-chain dehydrogenase reductase Sdr
J5X95_17865	COG3321	synthase
J5X95_17865	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J5X95_17870	COG4221	oxidoreductase activity
J5X95_17870	COG3321	synthase
J5X95_17870	COG1028	Short-chain dehydrogenase reductase Sdr
J5X95_17870	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J5X95_17875	COG3321	synthase
J5X95_17875	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
J5X95_17875	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J5X95_17875	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
J5X95_17880	COG2124	cytochrome p450
J5X95_17885	COG3209	COG3209 Rhs family protein
J5X95_17890	COG3619	membrane
J5X95_17900	COG1404	Belongs to the peptidase S8 family
J5X95_17910	COG4195	phage-related replication protein
J5X95_17915	COG1764	response to oxidative stress
J5X95_17925	COG2076	Multidrug Resistance protein
J5X95_17965	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
J5X95_17970	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
J5X95_17975	COG4112	unkown
J5X95_17980	COG0860	N-Acetylmuramoyl-L-alanine amidase
J5X95_17985	COG0464	growth
J5X95_17990	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
J5X95_17995	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
J5X95_18000	COG0789	Transcriptional regulator
J5X95_18005	COG0174	glutamine synthetase
J5X95_18035	COG0457	Tetratricopeptide repeat
J5X95_18040	COG0457	Tetratricopeptide repeat
J5X95_18050	COG2211	Major facilitator Superfamily
J5X95_18055	COG3507	Belongs to the glycosyl hydrolase 43 family
J5X95_18070	COG1070	Carbohydrate kinase
J5X95_18075	COG0574	Belongs to the PEP-utilizing enzyme family
J5X95_18075	COG3848	Pyruvate phosphate dikinase
J5X95_18100	COG1064	alcohol dehydrogenase
J5X95_18125	COG0456	acetyltransferase
J5X95_18155	COG3397	chitin binding
J5X95_18175	COG5434	Belongs to the glycosyl hydrolase 28 family
J5X95_18180	COG0756	dUTP diphosphatase activity
J5X95_18185	COG4195	phage-related replication protein
J5X95_18220	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
J5X95_18230	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
J5X95_18250	COG0785	Cytochrome C biogenesis protein
J5X95_18255	COG2201	protein-glutamate methylesterase activity
J5X95_18260	COG4846	Membrane protein involved in cytochrome C biogenesis
J5X95_18270	COG0071	Belongs to the small heat shock protein (HSP20) family
J5X95_18285	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
J5X95_18290	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
J5X95_18310	COG0824	Thioesterase
J5X95_18320	COG4841	protein insertion into membrane
J5X95_18330	COG1832	CoA-binding protein
J5X95_18335	COG0187	DNA topoisomerase II activity
J5X95_18340	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
J5X95_18350	COG1115	amino acid carrier protein
J5X95_18360	COG1063	alcohol dehydrogenase
J5X95_18365	COG0800	Aldolase
J5X95_18370	COG1312	Catalyzes the dehydration of D-mannonate
J5X95_18375	COG1028	Short-chain dehydrogenase reductase Sdr
J5X95_18380	COG1609	Transcriptional regulator
J5X95_18385	COG2271	Major facilitator Superfamily
J5X95_18410	COG0577	efflux transmembrane transporter activity
J5X95_18410	COG1136	(ABC) transporter
J5X95_18440	COG2205	protein histidine kinase activity
J5X95_18445	COG0745	RESPONSE REGULATOR receiver
J5X95_18455	COG3507	Belongs to the glycosyl hydrolase 43 family
J5X95_18480	COG1028	Short-chain dehydrogenase reductase Sdr
J5X95_18485	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
J5X95_18490	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
J5X95_18495	COG2610	gluconate transmembrane transporter activity
J5X95_18500	COG2124	cytochrome p450
J5X95_18520	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
J5X95_18530	COG2246	polysaccharide biosynthetic process
J5X95_18535	COG1210	Utp--glucose-1-phosphate uridylyltransferase
J5X95_18540	COG0586	Pfam SNARE associated Golgi protein
J5X95_18545	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
J5X95_18550	COG1024	Enoyl-CoA hydratase
J5X95_18555	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
J5X95_18560	COG0511	ligase activity, forming carbon-carbon bonds
J5X95_18565	COG0439	Biotin carboxylase
J5X95_18570	COG0318	PFAM AMP-dependent synthetase and ligase
J5X95_18575	COG1960	acyl-CoA dehydrogenase activity
J5X95_18580	COG1649	PFAM Uncharacterised BCR, COG1649
J5X95_18590	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
J5X95_18590	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J5X95_18595	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J5X95_18600	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J5X95_18605	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J5X95_18610	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J5X95_18615	COG2027	D-alanyl-D-alanine carboxypeptidase
J5X95_18620	COG2017	converts alpha-aldose to the beta-anomer
J5X95_18625	COG0534	Mate efflux family protein
J5X95_18635	COG5444	nuclease activity
J5X95_18650	COG5632	N-Acetylmuramoyl-L-alanine amidase
J5X95_18650	COG3409	Peptidoglycan-binding domain 1 protein
J5X95_18655	COG4824	toxin secretion phage lysis holin
J5X95_18675	COG5434	Belongs to the glycosyl hydrolase 28 family
J5X95_18680	COG1388	LysM domain
J5X95_18680	COG1705	Flagellar rod assembly protein muramidase FlgJ
J5X95_18755	COG1802	Transcriptional regulator
J5X95_18755	COG4626	Terminase
J5X95_18785	COG0582	viral genome integration into host DNA
J5X95_18790	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
J5X95_18900	COG4974	Belongs to the 'phage' integrase family
J5X95_18910	COG0582	viral genome integration into host DNA
J5X95_18915	COG0166	Belongs to the GPI family
J5X95_18920	COG0405	Gamma-glutamyltransferase
J5X95_18925	COG2814	Major facilitator Superfamily
J5X95_18930	COG0640	Transcriptional regulator
J5X95_18935	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
J5X95_18955	COG0493	'glutamate synthase
J5X95_18960	COG0067	glutamate synthase
J5X95_18960	COG0069	glutamate synthase activity
J5X95_18960	COG0070	glutamate synthase
J5X95_18965	COG0583	DNA-binding transcription factor activity
J5X95_18970	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
J5X95_18985	COG0300	oxidoreductase activity
J5X95_18990	COG4768	protein containing a divergent version of the methyl-accepting chemotaxis-like domain
J5X95_19000	COG2814	Major facilitator Superfamily
J5X95_19005	COG1070	Carbohydrate kinase
J5X95_19010	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
J5X95_19040	COG5444	nuclease activity
J5X95_19045	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J5X95_19050	COG0662	Cupin 2, conserved barrel domain protein
J5X95_19050	COG2207	Transcriptional regulator
J5X95_19055	COG1309	transcriptional regulator
J5X95_19060	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
J5X95_19070	COG0640	Transcriptional regulator
J5X95_19075	COG0741	lytic transglycosylase activity
J5X95_19080	COG2322	membrane
J5X95_19095	COG1619	proteins homologs of microcin C7 resistance protein MccF
J5X95_19105	COG1388	LysM domain
J5X95_19105	COG3584	3D domain protein
J5X95_19110	COG0514	ATP-dependent DNA helicase (RecQ)
J5X95_19120	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
J5X95_19125	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
J5X95_19140	COG0071	Belongs to the small heat shock protein (HSP20) family
J5X95_19170	COG1012	belongs to the aldehyde dehydrogenase family
J5X95_19175	COG1657	PFAM Prenyltransferase squalene oxidase
J5X95_19180	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
J5X95_19185	COG0733	neurotransmitter:sodium symporter activity
J5X95_19190	COG0385	Bile acid
J5X95_19195	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
J5X95_19200	COG0508	dehydrogenase complex catalyzes the overall conversion of
J5X95_19210	COG4548	von Willebrand factor, type A
J5X95_19215	COG0714	Associated with various cellular activities
J5X95_19220	COG2032	superoxide dismutase activity
J5X95_19225	COG0791	NLP P60 protein
J5X95_19225	COG1388	LysM domain
J5X95_19230	COG1819	glycosyl
J5X95_19235	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
J5X95_19240	COG0534	Mate efflux family protein
J5X95_19245	COG1366	Belongs to the anti-sigma-factor antagonist family
J5X95_19250	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
J5X95_19255	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
J5X95_19265	COG2962	Rard protein
J5X95_19280	COG1942	4-Oxalocrotonate Tautomerase
J5X95_19285	COG1733	regulation of RNA biosynthetic process
J5X95_19290	COG0778	Nitroreductase
J5X95_19295	COG0400	carboxylic ester hydrolase activity
J5X95_19300	COG0346	lactoylglutathione lyase activity
J5X95_19310	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
J5X95_19320	COG2723	6-phospho-beta-galactosidase activity
J5X95_19325	COG2188	Transcriptional regulator
J5X95_19330	COG3409	Peptidoglycan-binding domain 1 protein
J5X95_19330	COG0793	Belongs to the peptidase S41A family
J5X95_19335	COG2226	methyltransferase
J5X95_19345	COG1876	peptidase activity
J5X95_19365	COG0671	phosphoesterase, PA-phosphatase related
J5X95_19400	COG1509	lysine 2,3-aminomutase activity
J5X95_19405	COG0456	acetyltransferase
J5X95_19410	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
J5X95_19415	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
J5X95_19420	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
J5X95_19425	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
J5X95_19430	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
J5X95_19440	COG0456	acetyltransferase
J5X95_19445	COG0463	Glycosyl transferase, family 2
J5X95_19460	COG4641	Protein conserved in bacteria
J5X95_19470	COG1086	Polysaccharide biosynthesis protein
J5X95_19495	COG1388	LysM domain
J5X95_19500	COG0457	Tetratricopeptide repeat
J5X95_19530	COG5444	nuclease activity
J5X95_19535	COG4282	regulation of fungal-type cell wall biogenesis
J5X95_19540	COG1525	nuclease
J5X95_19545	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
J5X95_19565	COG1846	Transcriptional regulator
J5X95_19570	COG4698	Protein conserved in bacteria
J5X95_19575	COG2755	lipolytic protein G-D-S-L family
J5X95_19580	COG1999	signal sequence binding
J5X95_19590	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
J5X95_19595	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
J5X95_19600	COG1272	protein, Hemolysin III
J5X95_19605	COG0204	Acyl-transferase
J5X95_19610	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
J5X95_19625	COG2136	Putative SAM-dependent methyltransferase
J5X95_19625	COG2521	methyltransferase
J5X95_19640	COG1413	lyase activity
J5X95_19645	COG1418	mRNA catabolic process
J5X95_19650	COG0386	Belongs to the glutathione peroxidase family
J5X95_19660	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
J5X95_19670	COG1278	Cold shock
J5X95_19690	COG0328	RNA-DNA hybrid ribonuclease activity
J5X95_19695	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
J5X95_19700	COG0328	RNA-DNA hybrid ribonuclease activity
J5X95_19710	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
J5X95_19725	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
J5X95_19735	COG1755	Isoprenylcysteine carboxyl methyltransferase
J5X95_19740	COG3424	synthase
J5X95_19760	COG2323	membrane
J5X95_19765	COG1335	isochorismatase
J5X95_19795	COG5632	N-Acetylmuramoyl-L-alanine amidase
J5X95_19800	COG4824	toxin secretion phage lysis holin
J5X95_19820	COG5434	Belongs to the glycosyl hydrolase 28 family
J5X95_19825	COG1705	Flagellar rod assembly protein muramidase FlgJ
J5X95_19835	COG5280	Phage tail tape measure protein TP901
J5X95_19835	COG3953	SLT domain
J5X95_19945	COG1595	DNA-templated transcription, initiation
J5X95_19975	COG4570	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC
J5X95_19980	COG1484	DNA-dependent DNA replication
J5X95_19985	COG3935	DnaD domain protein
J5X95_20020	COG3646	Phage regulatory protein
J5X95_20020	COG3645	SOS response
J5X95_20035	COG3620	sequence-specific DNA binding
J5X95_20040	COG0582	viral genome integration into host DNA
J5X95_20065	COG5632	N-Acetylmuramoyl-L-alanine amidase
J5X95_20070	COG4824	toxin secretion phage lysis holin
J5X95_20120	COG0741	lytic transglycosylase activity
J5X95_20120	COG0791	NLP P60 protein
J5X95_20125	COG3883	PFAM NLP P60 protein
J5X95_20125	COG0791	NLP P60 protein
J5X95_20200	COG0629	single-stranded DNA binding
J5X95_20210	COG0582	viral genome integration into host DNA
J5X95_20240	COG1793	dna ligase
J5X95_20255	COG1525	nuclease
J5X95_20335	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
J5X95_20370	COG0457	Tetratricopeptide repeat
J5X95_20395	COG1396	sequence-specific DNA binding
J5X95_20510	COG0791	NLP P60 protein
J5X95_20510	COG3883	PFAM NLP P60 protein
J5X95_20580	COG0629	single-stranded DNA binding
J5X95_20590	COG0582	viral genome integration into host DNA
J5X95_20620	COG1793	dna ligase
J5X95_20635	COG1525	nuclease