XM40_00010 SM00116 Domain in cystathionine beta-synthase and other proteins. XM40_00010 SM01240 XM40_00010 XM40_00015 SM00936 Penicillin-binding protein 5, C-terminal domain XM40_00055 SM00257 Lysin motif XM40_00055 SM00636 XM40_00055 XM40_00070 SM00382 ATPases associated with a variety of cellular activities XM40_00080 SM00493 XM40_00080 XM40_00165 SM00465 GIY-YIG type nucleases (URI domain) XM40_00175 SM00966 SpoVT / AbrB like domain XM40_00190 SM01208 XM40_00190 XM40_00195 SM00493 XM40_00195 XM40_00200 SM00650 Ribosomal RNA adenine dimethylases XM40_00245 SM01400 XM40_00245 XM40_00265 SM00487 DEAD-like helicases superfamily XM40_00265 SM00490 helicase superfamily c-terminal domain XM40_00265 SM00982 XM40_00265 XM40_00265 SM01058 CarD-like/TRCF domain XM40_00270 SM00966 SpoVT / AbrB like domain XM40_00285 SM00363 S4 RNA-binding domain XM40_00305 SM00316 Ribosomal protein S1-like RNA-binding domain XM40_00320 SM00331 Sigma factor PP2C-like phosphatases XM40_00320 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain XM40_00330 SM00220 Serine/Threonine protein kinases, catalytic domain XM40_00335 SM00977 TilS substrate C-terminal domain XM40_00345 SM00382 ATPases associated with a variety of cellular activities XM40_00390 SM00905 Dihydroneopterin aldolase XM40_00400 SM00530 Helix-turn-helix XRE-family like proteins XM40_00505 SM00382 ATPases associated with a variety of cellular activities XM40_00505 SM01086 C-terminal, D2-small domain, of ClpB protein XM40_00510 SM00382 ATPases associated with a variety of cellular activities XM40_00520 SM00670 Large family of predicted nucleotide-binding domains XM40_00545 SM00840 XM40_00545 XM40_00550 SM00535 Ribonuclease III family XM40_00555 SM00967 RNA 2'-O ribose methyltransferase substrate binding XM40_00580 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. XM40_00580 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. XM40_00585 SM00649 Ribosomal protein L11/L12 XM40_00615 SM00663 RNA polymerase I subunit A N-terminus XM40_00635 SM00838 Elongation factor G C-terminus XM40_00635 SM00889 Elongation factor G, domain IV XM40_00650 SM01403 XM40_00650 XM40_00670 SM01382 XM40_00670 XM40_00670 SM01383 XM40_00670 XM40_00685 SM00322 K homology RNA-binding domain XM40_00705 SM01374 XM40_00705 XM40_00710 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. XM40_00765 SM00316 Ribosomal protein S1-like RNA-binding domain XM40_00785 SM00662 RNA polymerases D XM40_00795 SM00382 ATPases associated with a variety of cellular activities XM40_00800 SM00382 ATPases associated with a variety of cellular activities XM40_00840 SM00646 XM40_00840 XM40_00855 SM01251 XM40_00855 XM40_00990 SM00829 Enoylreductase XM40_01025 SM00342 helix_turn_helix, arabinose operon control protein XM40_01120 SM00382 ATPases associated with a variety of cellular activities XM40_01145 SM00347 helix_turn_helix multiple antibiotic resistance protein XM40_01165 SM00421 helix_turn_helix, Lux Regulon XM40_01165 SM00448 cheY-homologous receiver domain XM40_01170 SM00382 ATPases associated with a variety of cellular activities XM40_01250 SM00530 Helix-turn-helix XRE-family like proteins XM40_01285 SM00450 Rhodanese Homology Domain XM40_01320 SM00387 Histidine kinase-like ATPases XM40_01325 SM00448 cheY-homologous receiver domain XM40_01410 SM00870 XM40_01410 XM40_01450 SM00028 Tetratricopeptide repeats XM40_01460 SM00642 Alpha-amylase domain XM40_01470 SM00382 ATPases associated with a variety of cellular activities XM40_01520 SM00116 Domain in cystathionine beta-synthase and other proteins. XM40_01520 SM00382 ATPases associated with a variety of cellular activities XM40_01550 SM00632 XM40_01550 XM40_01550 SM00642 Alpha-amylase domain XM40_01565 SM00347 helix_turn_helix multiple antibiotic resistance protein XM40_01670 SM00833 Cobalamin synthesis protein cobW C-terminal domain XM40_01710 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family XM40_01720 SM00823 Phosphopantetheine attachment site XM40_01720 SM01294 XM40_01720 XM40_01725 SM00823 Phosphopantetheine attachment site XM40_01725 SM01294 XM40_01725 XM40_01730 SM00823 Phosphopantetheine attachment site XM40_01755 SM00382 ATPases associated with a variety of cellular activities XM40_01765 SM00062 Bacterial periplasmic substrate-binding proteins XM40_01800 SM00710 Parallel beta-helix repeats XM40_01800 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses XM40_01835 SM00062 Bacterial periplasmic substrate-binding proteins XM40_01845 SM00382 ATPases associated with a variety of cellular activities XM40_01860 SM00382 ATPases associated with a variety of cellular activities XM40_01870 SM00448 cheY-homologous receiver domain XM40_01870 SM00862 Transcriptional regulatory protein, C terminal XM40_01875 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XM40_01875 SM00387 Histidine kinase-like ATPases XM40_01875 SM00388 His Kinase A (phosphoacceptor) domain XM40_01880 SM00028 Tetratricopeptide repeats XM40_01905 SM00382 ATPases associated with a variety of cellular activities XM40_01935 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor XM40_01940 SM00345 helix_turn_helix gluconate operon transcriptional repressor XM40_01975 SM00420 helix_turn_helix, Deoxyribose operon repressor XM40_02025 SM00796 Allophanate hydrolase subunit 1 XM40_02030 SM00797 Allophanate hydrolase subunit 2 XM40_02035 SM00346 helix_turn_helix isocitrate lyase regulation XM40_02105 SM00344 helix_turn_helix ASNC type XM40_02110 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain XM40_02110 SM00437 Bacterial DNA topoisomerase I DNA-binding domain XM40_02110 SM00493 XM40_02110 XM40_02120 SM00267 diguanylate cyclase XM40_02240 SM00091 PAS domain XM40_02240 SM00387 Histidine kinase-like ATPases XM40_02245 SM00448 cheY-homologous receiver domain XM40_02260 SM00382 ATPases associated with a variety of cellular activities XM40_02305 SM00487 DEAD-like helicases superfamily XM40_02305 SM00490 helicase superfamily c-terminal domain XM40_02335 SM01005 Alanine racemase, C-terminal domain XM40_02360 SM00387 Histidine kinase-like ATPases XM40_02365 SM00331 Sigma factor PP2C-like phosphatases XM40_02385 SM00331 Sigma factor PP2C-like phosphatases XM40_02385 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain XM40_02390 SM00316 Ribosomal protein S1-like RNA-binding domain XM40_02390 SM00732 Likely ribonuclease with RNase H fold. XM40_02395 SM00731 SprT homologues. XM40_02460 SM00347 helix_turn_helix multiple antibiotic resistance protein XM40_02490 SM00357 Cold shock protein domain XM40_02505 SM00450 Rhodanese Homology Domain XM40_02510 SM00450 Rhodanese Homology Domain XM40_02510 SM00849 Metallo-beta-lactamase superfamily XM40_02555 SM00345 helix_turn_helix gluconate operon transcriptional repressor XM40_02555 SM00895 XM40_02555 XM40_02575 SM00342 helix_turn_helix, arabinose operon control protein XM40_02585 SM00345 helix_turn_helix gluconate operon transcriptional repressor XM40_02640 SM01130 XM40_02640 XM40_02665 SM00829 Enoylreductase XM40_02670 SM00422 helix_turn_helix, mercury resistance XM40_02680 SM00345 helix_turn_helix gluconate operon transcriptional repressor XM40_02735 SM00387 Histidine kinase-like ATPases XM40_02740 SM00421 helix_turn_helix, Lux Regulon XM40_02740 SM00448 cheY-homologous receiver domain XM40_02755 SM00382 ATPases associated with a variety of cellular activities XM40_02780 SM00825 Beta-ketoacyl synthase XM40_02785 SM00530 Helix-turn-helix XRE-family like proteins XM40_02800 SM00422 helix_turn_helix, mercury resistance XM40_02820 SM01329 XM40_02820 XM40_02825 SM00345 helix_turn_helix gluconate operon transcriptional repressor XM40_02825 SM00895 XM40_02825 XM40_02860 SM00345 helix_turn_helix gluconate operon transcriptional repressor XM40_02860 SM00866 XM40_02860 XM40_02865 SM00345 helix_turn_helix gluconate operon transcriptional repressor XM40_02865 SM00895 XM40_02865 XM40_02905 SM00829 Enoylreductase XM40_02975 SM00382 ATPases associated with a variety of cellular activities XM40_02985 SM00881 CoA binding domain XM40_03010 SM00883 Chaperonin 10 Kd subunit XM40_03035 SM00028 Tetratricopeptide repeats XM40_03035 SM00382 ATPases associated with a variety of cellular activities XM40_03040 SM00829 Enoylreductase XM40_03095 SM00829 Enoylreductase XM40_03140 SM00460 Transglutaminase/protease-like homologues XM40_03180 SM01001 AIR carboxylase XM40_03190 SM00998 Adenylosuccinate lyase C-terminus XM40_03205 SM01211 XM40_03205 XM40_03230 SM00798 AICARFT/IMPCHase bienzyme XM40_03230 SM00851 MGS-like domain XM40_03235 SM01209 XM40_03235 XM40_03235 SM01210 XM40_03235 XM40_03280 SM00278 Helix-hairpin-helix DNA-binding motif class 1 XM40_03280 SM00292 breast cancer carboxy-terminal domain XM40_03280 SM00532 Ligase N family XM40_03315 SM00845 GatB domain XM40_03330 SM00046 Diacylglycerol kinase catalytic domain (presumed) XM40_03345 SM00382 ATPases associated with a variety of cellular activities XM40_03515 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XM40_03530 SM00382 ATPases associated with a variety of cellular activities XM40_03535 SM00422 helix_turn_helix, mercury resistance XM40_03545 SM00382 ATPases associated with a variety of cellular activities XM40_03550 SM00487 DEAD-like helicases superfamily XM40_03550 SM00490 helicase superfamily c-terminal domain XM40_03560 SM00829 Enoylreductase XM40_03575 SM00656 XM40_03575 XM40_03600 SM00387 Histidine kinase-like ATPases XM40_03600 SM00388 His Kinase A (phosphoacceptor) domain XM40_03600 SM00448 cheY-homologous receiver domain XM40_03605 SM00448 cheY-homologous receiver domain XM40_03605 SM00862 Transcriptional regulatory protein, C terminal XM40_03620 SM00091 PAS domain XM40_03620 SM00387 Histidine kinase-like ATPases XM40_03625 SM00448 cheY-homologous receiver domain XM40_03640 SM00849 Metallo-beta-lactamase superfamily XM40_03710 SM00642 Alpha-amylase domain XM40_03715 SM00345 helix_turn_helix gluconate operon transcriptional repressor XM40_03715 SM00866 XM40_03715 XM40_03745 SM00354 helix_turn _helix lactose operon repressor XM40_03770 SM00226 Low molecular weight phosphatase family XM40_03835 SM00478 endonuclease III XM40_03865 SM00861 Transketolase, pyrimidine binding domain XM40_03880 SM00382 ATPases associated with a variety of cellular activities XM40_03905 SM00382 ATPases associated with a variety of cellular activities XM40_03910 SM00382 ATPases associated with a variety of cellular activities XM40_03965 SM00347 helix_turn_helix multiple antibiotic resistance protein XM40_04030 SM00287 Bacterial SH3 domain homologues XM40_04060 SM00478 endonuclease III XM40_04060 SM00525 XM40_04060 XM40_04090 SM00382 ATPases associated with a variety of cellular activities XM40_04255 SM00382 ATPases associated with a variety of cellular activities XM40_04260 SM00382 ATPases associated with a variety of cellular activities XM40_04265 SM01060 XM40_04265 XM40_04275 SM00382 ATPases associated with a variety of cellular activities XM40_04280 SM00062 Bacterial periplasmic substrate-binding proteins XM40_04305 SM00530 Helix-turn-helix XRE-family like proteins XM40_04320 SM00567 E-Z type HEAT repeats XM40_04350 SM00763 PrkA AAA domain XM40_04360 SM00347 helix_turn_helix multiple antibiotic resistance protein XM40_04390 SM00345 helix_turn_helix gluconate operon transcriptional repressor XM40_04395 SM00382 ATPases associated with a variety of cellular activities XM40_04400 SM00382 ATPases associated with a variety of cellular activities XM40_04410 SM00357 Cold shock protein domain XM40_04420 SM00267 diguanylate cyclase XM40_04460 SM00363 S4 RNA-binding domain XM40_04470 SM00116 Domain in cystathionine beta-synthase and other proteins. XM40_04540 SM00257 Lysin motif XM40_04560 SM00098 Alkaline phosphatase homologues XM40_04565 SM00257 Lysin motif XM40_04610 SM00563 Phosphate acyltransferases XM40_04615 SM01091 Transporter associated domain XM40_04620 SM00422 helix_turn_helix, mercury resistance XM40_04630 SM00825 Beta-ketoacyl synthase XM40_04635 SM01091 Transporter associated domain XM40_04690 SM00382 ATPases associated with a variety of cellular activities XM40_04695 SM00382 ATPases associated with a variety of cellular activities XM40_04745 SM00729 Elongator protein 3, MiaB family, Radical SAM XM40_04780 SM00382 ATPases associated with a variety of cellular activities XM40_04800 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. XM40_04840 SM00347 helix_turn_helix multiple antibiotic resistance protein XM40_04870 SM00382 ATPases associated with a variety of cellular activities XM40_04950 SM00849 Metallo-beta-lactamase superfamily XM40_04995 SM00855 Phosphoglycerate mutase family XM40_05015 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XM40_05030 SM00914 XM40_05030 XM40_05055 SM00894 Excalibur calcium-binding domain XM40_05095 SM00347 helix_turn_helix multiple antibiotic resistance protein XM40_05220 SM00342 helix_turn_helix, arabinose operon control protein XM40_05225 SM00354 helix_turn _helix lactose operon repressor XM40_05260 SM00316 Ribosomal protein S1-like RNA-binding domain XM40_05270 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XM40_05270 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XM40_05325 SM00859 Semialdehyde dehydrogenase, NAD binding domain XM40_05345 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain XM40_05350 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain XM40_05405 SM00825 Beta-ketoacyl synthase XM40_05415 SM00382 ATPases associated with a variety of cellular activities XM40_05420 SM00382 ATPases associated with a variety of cellular activities XM40_05475 SM00382 ATPases associated with a variety of cellular activities XM40_05480 SM00382 ATPases associated with a variety of cellular activities XM40_05540 SM01118 XM40_05540 XM40_05550 SM00954 Region found in RelA / SpoT proteins XM40_05675 SM00849 Metallo-beta-lactamase superfamily XM40_05685 SM00382 ATPases associated with a variety of cellular activities XM40_05690 SM00966 SpoVT / AbrB like domain XM40_05760 SM00347 helix_turn_helix multiple antibiotic resistance protein XM40_05800 SM00420 helix_turn_helix, Deoxyribose operon repressor XM40_05800 SM01134 XM40_05800 XM40_05810 SM00612 XM40_05810 XM40_05835 SM00926 Molybdopterin oxidoreductase Fe4S4 domain XM40_05835 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region XM40_05870 SM00382 ATPases associated with a variety of cellular activities XM40_05905 SM00354 helix_turn _helix lactose operon repressor XM40_05915 SM00858 XM40_05915 XM40_05920 SM00448 cheY-homologous receiver domain XM40_05920 SM00862 Transcriptional regulatory protein, C terminal XM40_05925 SM00387 Histidine kinase-like ATPases XM40_05925 SM00388 His Kinase A (phosphoacceptor) domain XM40_05930 SM00382 ATPases associated with a variety of cellular activities XM40_05950 SM00421 helix_turn_helix, Lux Regulon XM40_05950 SM00448 cheY-homologous receiver domain XM40_05960 SM01260 XM40_05960 XM40_05965 SM00382 ATPases associated with a variety of cellular activities XM40_05970 SM01260 XM40_05970 XM40_05985 SM00028 Tetratricopeptide repeats XM40_05995 SM00257 Lysin motif XM40_05995 SM00644 XM40_05995 XM40_06015 SM00530 Helix-turn-helix XRE-family like proteins XM40_06030 SM00382 ATPases associated with a variety of cellular activities XM40_06120 SM00257 Lysin motif XM40_06185 SM00257 Lysin motif XM40_06185 SM00644 XM40_06185 XM40_06230 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. XM40_06255 SM00382 ATPases associated with a variety of cellular activities XM40_06270 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain XM40_06280 SM00382 ATPases associated with a variety of cellular activities XM40_06320 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase XM40_06335 SM00347 helix_turn_helix multiple antibiotic resistance protein XM40_06355 SM00028 Tetratricopeptide repeats XM40_06370 SM00100 Cyclic nucleotide-monophosphate binding domain XM40_06395 SM00382 ATPases associated with a variety of cellular activities XM40_06405 SM00257 Lysin motif XM40_06405 SM00636 XM40_06405 XM40_06410 SM00116 Domain in cystathionine beta-synthase and other proteins. XM40_06410 SM00924 MgtE intracellular N domain XM40_06415 SM00422 helix_turn_helix, mercury resistance XM40_06425 SM00347 helix_turn_helix multiple antibiotic resistance protein XM40_06440 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen XM40_06500 SM00091 PAS domain XM40_06500 SM00387 Histidine kinase-like ATPases XM40_06500 SM00388 His Kinase A (phosphoacceptor) domain XM40_06540 SM01007 Class II Aldolase and Adducin N-terminal domain XM40_06555 SM00387 Histidine kinase-like ATPases XM40_06555 SM00388 His Kinase A (phosphoacceptor) domain XM40_06560 SM00347 helix_turn_helix multiple antibiotic resistance protein XM40_06575 SM00382 ATPases associated with a variety of cellular activities XM40_06575 SM01086 C-terminal, D2-small domain, of ClpB protein XM40_06685 SM00354 helix_turn _helix lactose operon repressor XM40_06690 SM01061 CAT RNA binding domain XM40_06720 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XM40_06720 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XM40_06750 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XM40_06750 SM00091 PAS domain XM40_06750 SM00387 Histidine kinase-like ATPases XM40_06750 SM00388 His Kinase A (phosphoacceptor) domain XM40_06760 SM00260 Two component signalling adaptor domain XM40_06760 SM00448 cheY-homologous receiver domain XM40_06775 SM00257 Lysin motif XM40_06795 SM00052 Putative diguanylate phosphodiesterase XM40_06885 SM00852 Probable molybdopterin binding domain XM40_06915 SM00382 ATPases associated with a variety of cellular activities XM40_06920 SM01066 Carbohydrate binding domain XM40_06925 SM00420 helix_turn_helix, Deoxyribose operon repressor XM40_06925 SM01134 XM40_06925 XM40_06950 SM00382 ATPases associated with a variety of cellular activities XM40_06975 SM00966 SpoVT / AbrB like domain XM40_06980 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XM40_06980 SM00091 PAS domain XM40_06980 SM00387 Histidine kinase-like ATPases XM40_06980 SM00388 His Kinase A (phosphoacceptor) domain XM40_07000 SM00849 Metallo-beta-lactamase superfamily XM40_07030 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. XM40_07035 SM00822 XM40_07035 XM40_07035 SM00823 Phosphopantetheine attachment site XM40_07035 SM00825 Beta-ketoacyl synthase XM40_07035 SM00826 XM40_07035 XM40_07035 SM01294 XM40_07035 XM40_07040 SM00822 XM40_07040 XM40_07040 SM00823 Phosphopantetheine attachment site XM40_07040 SM00825 Beta-ketoacyl synthase XM40_07040 SM00826 XM40_07040 XM40_07045 SM00822 XM40_07045 XM40_07045 SM00823 Phosphopantetheine attachment site XM40_07045 SM00825 Beta-ketoacyl synthase XM40_07045 SM01294 XM40_07045 XM40_07050 SM00822 XM40_07050 XM40_07050 SM00823 Phosphopantetheine attachment site XM40_07050 SM00825 Beta-ketoacyl synthase XM40_07050 SM01294 XM40_07050 XM40_07055 SM00822 XM40_07055 XM40_07055 SM00823 Phosphopantetheine attachment site XM40_07055 SM00825 Beta-ketoacyl synthase XM40_07055 SM01294 XM40_07055 XM40_07060 SM00822 XM40_07060 XM40_07060 SM00823 Phosphopantetheine attachment site XM40_07060 SM00825 Beta-ketoacyl synthase XM40_07060 SM01294 XM40_07060 XM40_07065 SM00822 XM40_07065 XM40_07065 SM00823 Phosphopantetheine attachment site XM40_07065 SM01294 XM40_07065 XM40_07080 SM00861 Transketolase, pyrimidine binding domain XM40_07170 SM00838 Elongation factor G C-terminus XM40_07190 SM00670 Large family of predicted nucleotide-binding domains XM40_07215 SM00878 Biotin carboxylase C-terminal domain XM40_07260 SM00116 Domain in cystathionine beta-synthase and other proteins. XM40_07365 SM00740 XM40_07365 XM40_07370 SM00740 XM40_07370 XM40_07410 SM00842 Cell division protein FtsA XM40_07415 SM00864 Tubulin/FtsZ family, GTPase domain XM40_07415 SM00865 Tubulin/FtsZ family, C-terminal domain XM40_07440 SM00382 ATPases associated with a variety of cellular activities XM40_07475 SM00363 S4 RNA-binding domain XM40_07505 SM00363 S4 RNA-binding domain XM40_07530 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain XM40_07535 SM00851 MGS-like domain XM40_07535 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain XM40_07550 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family XM40_07600 SM00831 Cation transporter/ATPase, N-terminus XM40_07615 SM00072 Guanylate kinase homologues. XM40_07620 SM01409 XM40_07620 XM40_07630 SM00487 DEAD-like helicases superfamily XM40_07630 SM00490 helicase superfamily c-terminal domain XM40_07655 SM00331 Sigma factor PP2C-like phosphatases XM40_07655 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain XM40_07660 SM00220 Serine/Threonine protein kinases, catalytic domain XM40_07660 SM00740 XM40_07660 XM40_07675 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain XM40_07695 SM01120 XM40_07695 XM40_07695 SM01121 XM40_07695 XM40_07710 SM00487 DEAD-like helicases superfamily XM40_07710 SM00490 helicase superfamily c-terminal domain XM40_07725 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. XM40_07730 SM00822 XM40_07730 XM40_07740 SM00358 Double-stranded RNA binding motif XM40_07740 SM00535 Ribonuclease III family XM40_07745 SM00968 SMC proteins Flexible Hinge Domain XM40_07750 SM00382 ATPases associated with a variety of cellular activities XM40_07750 SM00962 SRP54-type protein, GTPase domain XM40_07750 SM00963 SRP54-type protein, helical bundle domain XM40_07765 SM00382 ATPases associated with a variety of cellular activities XM40_07765 SM00962 SRP54-type protein, GTPase domain XM40_07765 SM00963 SRP54-type protein, helical bundle domain XM40_07825 SM00881 CoA binding domain XM40_07835 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain XM40_07835 SM00437 Bacterial DNA topoisomerase I DNA-binding domain XM40_07835 SM00493 XM40_07835 XM40_07855 SM00382 ATPases associated with a variety of cellular activities XM40_07855 SM01086 C-terminal, D2-small domain, of ClpB protein XM40_07895 SM00382 ATPases associated with a variety of cellular activities XM40_07945 SM00448 cheY-homologous receiver domain XM40_07980 SM00962 SRP54-type protein, GTPase domain XM40_07990 SM00448 cheY-homologous receiver domain XM40_07995 SM00073 Histidine Phosphotransfer domain XM40_07995 SM00260 Two component signalling adaptor domain XM40_07995 SM00387 Histidine kinase-like ATPases XM40_07995 SM01231 XM40_07995 XM40_08000 SM00260 Two component signalling adaptor domain XM40_08060 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. XM40_08070 SM00479 XM40_08070 XM40_08070 SM00481 DNA polymerase alpha chain like domain XM40_08080 SM00316 Ribosomal protein S1-like RNA-binding domain XM40_08080 SM00322 K homology RNA-binding domain XM40_08115 SM00904 Riboflavin kinase XM40_08120 SM01387 XM40_08120 XM40_08125 SM00316 Ribosomal protein S1-like RNA-binding domain XM40_08125 SM00322 K homology RNA-binding domain XM40_08155 SM00859 Semialdehyde dehydrogenase, NAD binding domain XM40_08165 SM01130 XM40_08165 XM40_08170 SM00849 Metallo-beta-lactamase superfamily XM40_08185 SM00382 ATPases associated with a variety of cellular activities XM40_08185 SM00843 XM40_08185 XM40_08190 SM00345 helix_turn_helix gluconate operon transcriptional repressor XM40_08190 SM00866 XM40_08190 XM40_08200 SM00347 helix_turn_helix multiple antibiotic resistance protein XM40_08235 SM00530 Helix-turn-helix XRE-family like proteins XM40_08245 SM00852 Probable molybdopterin binding domain XM40_08250 SM00382 ATPases associated with a variety of cellular activities XM40_08260 SM00322 K homology RNA-binding domain XM40_08260 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. XM40_08275 SM00829 Enoylreductase XM40_08285 SM00729 Elongator protein 3, MiaB family, Radical SAM XM40_08300 SM00533 DNA-binding domain of DNA mismatch repair MUTS family XM40_08300 SM00534 ATPase domain of DNA mismatch repair MUTS family XM40_08305 SM00853 MutL C terminal dimerisation domain XM40_08305 SM01340 XM40_08305 XM40_08320 SM00530 Helix-turn-helix XRE-family like proteins XM40_08325 SM00530 Helix-turn-helix XRE-family like proteins XM40_08440 SM00507 HNH nucleases XM40_08515 SM00047 Lysozyme subfamily 2 XM40_08520 SM00710 Parallel beta-helix repeats XM40_08550 SM00849 Metallo-beta-lactamase superfamily XM40_08555 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. XM40_08560 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. XM40_08565 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. XM40_08590 SM00822 XM40_08590 XM40_08590 SM00823 Phosphopantetheine attachment site XM40_08590 SM00825 Beta-ketoacyl synthase XM40_08590 SM00826 XM40_08590 XM40_08590 SM01294 XM40_08590 XM40_08595 SM00822 XM40_08595 XM40_08595 SM00823 Phosphopantetheine attachment site XM40_08595 SM00825 Beta-ketoacyl synthase XM40_08595 SM00826 XM40_08595 XM40_08595 SM01294 XM40_08595 XM40_08600 SM00822 XM40_08600 XM40_08600 SM00823 Phosphopantetheine attachment site XM40_08600 SM00825 Beta-ketoacyl synthase XM40_08600 SM00826 XM40_08600 XM40_08600 SM01294 XM40_08600 XM40_08605 SM00822 XM40_08605 XM40_08605 SM00823 Phosphopantetheine attachment site XM40_08605 SM00825 Beta-ketoacyl synthase XM40_08605 SM00826 XM40_08605 XM40_08605 SM01294 XM40_08605 XM40_08610 SM00823 Phosphopantetheine attachment site XM40_08610 SM00825 Beta-ketoacyl synthase XM40_08610 SM01294 XM40_08610 XM40_08725 SM00382 ATPases associated with a variety of cellular activities XM40_08740 SM00422 helix_turn_helix, mercury resistance XM40_08745 SM01230 XM40_08745 XM40_08800 SM00829 Enoylreductase XM40_08845 SM00710 Parallel beta-helix repeats XM40_08880 SM00257 Lysin motif XM40_08885 SM00857 Resolvase, N terminal domain XM40_08895 SM00861 Transketolase, pyrimidine binding domain XM40_08920 SM00448 cheY-homologous receiver domain XM40_08990 SM01207 XM40_08990 XM40_08995 SM00881 CoA binding domain XM40_09000 SM00387 Histidine kinase-like ATPases XM40_09000 SM00433 TopoisomeraseII XM40_09005 SM00434 DNA Topoisomerase IV XM40_09025 SM00829 Enoylreductase XM40_09045 SM00354 helix_turn _helix lactose operon repressor XM40_09090 SM01067 Cellulose binding domain XM40_09100 SM00387 Histidine kinase-like ATPases XM40_09100 SM00388 His Kinase A (phosphoacceptor) domain XM40_09105 SM00448 cheY-homologous receiver domain XM40_09105 SM00862 Transcriptional regulatory protein, C terminal XM40_09115 SM00606 Cellulose Binding Domain Type IV XM40_09120 SM00823 Phosphopantetheine attachment site XM40_09120 SM00824 Thioesterase XM40_09125 SM00823 Phosphopantetheine attachment site XM40_09130 SM00823 Phosphopantetheine attachment site XM40_09130 SM00825 Beta-ketoacyl synthase XM40_09135 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. XM40_09140 SM00822 XM40_09140 XM40_09145 SM00882 Coenzyme A transferase XM40_09150 SM00882 Coenzyme A transferase XM40_09165 SM00729 Elongator protein 3, MiaB family, Radical SAM XM40_09165 SM00876 Biotin and Thiamin Synthesis associated domain XM40_09225 SM00878 Biotin carboxylase C-terminal domain XM40_09255 SM00823 Phosphopantetheine attachment site XM40_09270 SM00028 Tetratricopeptide repeats XM40_09305 SM00860 SMI1 / KNR4 family XM40_09310 SM00860 SMI1 / KNR4 family XM40_09320 SM00860 SMI1 / KNR4 family XM40_09330 SM00857 Resolvase, N terminal domain XM40_09385 SM00823 Phosphopantetheine attachment site XM40_09385 SM01294 XM40_09385 XM40_09390 SM00823 Phosphopantetheine attachment site XM40_09445 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor XM40_09460 SM00829 Enoylreductase XM40_09480 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase XM40_09495 SM00822 XM40_09495 XM40_09525 SM00926 Molybdopterin oxidoreductase Fe4S4 domain XM40_09535 SM00347 helix_turn_helix multiple antibiotic resistance protein XM40_09545 SM00822 XM40_09545 XM40_09560 SM00342 helix_turn_helix, arabinose operon control protein XM40_09570 SM00849 Metallo-beta-lactamase superfamily XM40_09580 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor XM40_09615 SM00257 Lysin motif XM40_09620 SM00341 Helicase and RNase D C-terminal XM40_09620 SM00487 DEAD-like helicases superfamily XM40_09620 SM00490 helicase superfamily c-terminal domain XM40_09620 SM00956 XM40_09620 XM40_09695 SM00849 Metallo-beta-lactamase superfamily XM40_09705 SM00861 Transketolase, pyrimidine binding domain XM40_09710 SM00327 von Willebrand factor (vWF) type A domain XM40_09715 SM00382 ATPases associated with a variety of cellular activities XM40_09725 SM00257 Lysin motif XM40_09830 SM00345 helix_turn_helix gluconate operon transcriptional repressor XM40_09830 SM00866 XM40_09830 XM40_09835 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. XM40_09835 SM00245 tail specific protease XM40_09865 SM00014 Acid phosphatase homologues XM40_09910 SM00882 Coenzyme A transferase XM40_09915 SM00882 Coenzyme A transferase XM40_09925 SM00871 Bacterial transcription activator, effector binding domain XM40_09985 SM00347 helix_turn_helix multiple antibiotic resistance protein XM40_10060 SM00567 E-Z type HEAT repeats XM40_10060 SM00932 Scaffold protein Nfu/NifU N terminal XM40_10085 SM00357 Cold shock protein domain XM40_10125 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs XM40_10125 SM00475 5'-3' exonuclease XM40_10195 SM00491 XM40_10195 XM40_10210 SM00981 XM40_10210 XM40_10230 SM00487 DEAD-like helicases superfamily XM40_10230 SM00490 helicase superfamily c-terminal domain XM40_10280 SM00060 Fibronectin type 3 domain XM40_10290 SM00478 endonuclease III XM40_10290 SM00525 XM40_10290 XM40_10315 SM00479 XM40_10315 XM40_10315 SM00487 DEAD-like helicases superfamily XM40_10315 SM00491 XM40_10315 XM40_10355 SM00851 MGS-like domain XM40_10375 SM00835 Cupin XM40_10410 SM00914 XM40_10410 XM40_10415 SM00028 Tetratricopeptide repeats XM40_10480 SM00138 Methyltransferase, chemotaxis proteins XM40_10485 SM00562 XM40_10485 XM40_10515 SM00411 bacterial (prokaryotic) histone like domain XM40_10555 SM00316 Ribosomal protein S1-like RNA-binding domain XM40_10590 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase XM40_10610 SM00257 Lysin motif XM40_10620 SM00487 DEAD-like helicases superfamily XM40_10620 SM00490 helicase superfamily c-terminal domain XM40_10655 SM00091 PAS domain XM40_10655 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XM40_10655 SM00387 Histidine kinase-like ATPases XM40_10655 SM00388 His Kinase A (phosphoacceptor) domain XM40_10660 SM00448 cheY-homologous receiver domain XM40_10660 SM00862 Transcriptional regulatory protein, C terminal XM40_10680 SM00363 S4 RNA-binding domain XM40_10815 SM00387 Histidine kinase-like ATPases XM40_10825 SM00936 Penicillin-binding protein 5, C-terminal domain XM40_10870 SM00919 Malic enzyme, NAD binding domain XM40_10870 SM01274 XM40_10870 XM40_10885 SM00870 XM40_10885 XM40_10890 SM00530 Helix-turn-helix XRE-family like proteins XM40_10990 SM00849 Metallo-beta-lactamase superfamily XM40_11015 SM00823 Phosphopantetheine attachment site XM40_11015 SM00825 Beta-ketoacyl synthase XM40_11015 SM00829 Enoylreductase XM40_11015 SM01294 XM40_11015 XM40_11020 SM00822 XM40_11020 XM40_11020 SM00825 Beta-ketoacyl synthase XM40_11020 SM00826 XM40_11020 XM40_11025 SM00822 XM40_11025 XM40_11025 SM00823 Phosphopantetheine attachment site XM40_11025 SM00825 Beta-ketoacyl synthase XM40_11025 SM01294 XM40_11025 XM40_11030 SM00822 XM40_11030 XM40_11030 SM00823 Phosphopantetheine attachment site XM40_11030 SM00825 Beta-ketoacyl synthase XM40_11030 SM00826 XM40_11030 XM40_11030 SM01294 XM40_11030 XM40_11035 SM00822 XM40_11035 XM40_11035 SM00823 Phosphopantetheine attachment site XM40_11035 SM00825 Beta-ketoacyl synthase XM40_11035 SM00826 XM40_11035 XM40_11035 SM01294 XM40_11035 XM40_11040 SM00822 XM40_11040 XM40_11040 SM00823 Phosphopantetheine attachment site XM40_11040 SM00825 Beta-ketoacyl synthase XM40_11040 SM01294 XM40_11040 XM40_11045 SM00822 XM40_11045 XM40_11045 SM00823 Phosphopantetheine attachment site XM40_11045 SM00825 Beta-ketoacyl synthase XM40_11045 SM00826 XM40_11045 XM40_11045 SM01294 XM40_11045 XM40_11070 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. XM40_11075 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. XM40_11105 SM00849 Metallo-beta-lactamase superfamily XM40_11115 SM01350 XM40_11115 XM40_11160 SM00382 ATPases associated with a variety of cellular activities XM40_11170 SM00062 Bacterial periplasmic substrate-binding proteins XM40_11170 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. XM40_11180 SM00046 Diacylglycerol kinase catalytic domain (presumed) XM40_11190 SM00861 Transketolase, pyrimidine binding domain XM40_11210 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase XM40_11220 SM00091 PAS domain XM40_11220 SM00382 ATPases associated with a variety of cellular activities XM40_11265 SM00646 XM40_11265 XM40_11280 SM00530 Helix-turn-helix XRE-family like proteins XM40_11305 SM01005 Alanine racemase, C-terminal domain XM40_11310 SM00448 cheY-homologous receiver domain XM40_11315 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. XM40_11330 SM00363 S4 RNA-binding domain XM40_11335 SM00861 Transketolase, pyrimidine binding domain XM40_11370 SM00878 Biotin carboxylase C-terminal domain XM40_11415 SM00382 ATPases associated with a variety of cellular activities XM40_11425 SM00841 Elongation factor P, C-terminal XM40_11425 SM01185 XM40_11425 XM40_11455 SM00529 Helix-turn-helix diphteria tox regulatory element XM40_11465 SM00450 Rhodanese Homology Domain XM40_11485 SM00487 DEAD-like helicases superfamily XM40_11485 SM00490 helicase superfamily c-terminal domain XM40_11500 SM00530 Helix-turn-helix XRE-family like proteins XM40_11560 SM00382 ATPases associated with a variety of cellular activities XM40_11570 SM01091 Transporter associated domain XM40_11595 SM00849 Metallo-beta-lactamase superfamily XM40_11615 SM00631 XM40_11615 XM40_11650 SM00382 ATPases associated with a variety of cellular activities XM40_11655 SM00382 ATPases associated with a variety of cellular activities XM40_11700 SM00257 Lysin motif XM40_11735 SM00518 AP endonuclease family 2 XM40_11740 SM00487 DEAD-like helicases superfamily XM40_11740 SM00490 helicase superfamily c-terminal domain XM40_11775 SM00400 zinc finger XM40_11775 SM00493 XM40_11775 XM40_11790 SM00116 Domain in cystathionine beta-synthase and other proteins. XM40_11830 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. XM40_11880 SM00729 Elongator protein 3, MiaB family, Radical SAM XM40_11895 SM00271 DnaJ molecular chaperone homology domain XM40_11915 SM00729 Elongator protein 3, MiaB family, Radical SAM XM40_11920 SM00838 Elongation factor G C-terminus XM40_11955 SM00849 Metallo-beta-lactamase superfamily XM40_11965 SM00278 Helix-hairpin-helix DNA-binding motif class 1 XM40_11985 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. XM40_11995 SM01103 XM40_11995 XM40_12055 SM00342 helix_turn_helix, arabinose operon control protein XM40_12055 SM00871 Bacterial transcription activator, effector binding domain XM40_12120 SM00849 Metallo-beta-lactamase superfamily XM40_12170 SM00926 Molybdopterin oxidoreductase Fe4S4 domain XM40_12170 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region XM40_12255 SM00732 Likely ribonuclease with RNase H fold. XM40_12265 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain XM40_12275 SM00382 ATPases associated with a variety of cellular activities XM40_12280 SM00062 Bacterial periplasmic substrate-binding proteins XM40_12280 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. XM40_12305 SM00382 ATPases associated with a variety of cellular activities XM40_12310 SM00028 Tetratricopeptide repeats XM40_12330 SM00382 ATPases associated with a variety of cellular activities XM40_12350 SM00287 Bacterial SH3 domain homologues XM40_12350 SM00646 XM40_12350 XM40_12360 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. XM40_12360 SM00954 Region found in RelA / SpoT proteins XM40_12410 SM01323 XM40_12410 XM40_12430 SM00382 ATPases associated with a variety of cellular activities XM40_12435 SM00278 Helix-hairpin-helix DNA-binding motif class 1 XM40_12455 SM00257 Lysin motif XM40_12500 SM01317 XM40_12500 XM40_12595 SM00257 Lysin motif XM40_12605 SM01004 Delta-aminolevulinic acid dehydratase XM40_12640 SM00382 ATPases associated with a variety of cellular activities XM40_12640 SM00464 Found in ATP-dependent protease La (LON) XM40_12645 SM00382 ATPases associated with a variety of cellular activities XM40_12650 SM00382 ATPases associated with a variety of cellular activities XM40_12650 SM00994 ClpX C4-type zinc finger XM40_12650 SM01086 C-terminal, D2-small domain, of ClpB protein XM40_12675 SM01329 XM40_12675 XM40_12680 SM00917 LeuA allosteric (dimerisation) domain XM40_12725 SM00487 DEAD-like helicases superfamily XM40_12725 SM00490 helicase superfamily c-terminal domain XM40_12760 SM00909 Sporulation and spore germination XM40_12770 SM00347 helix_turn_helix multiple antibiotic resistance protein XM40_12775 SM00421 helix_turn_helix, Lux Regulon XM40_12810 SM00465 GIY-YIG type nucleases (URI domain) XM40_12820 SM00813 Alpha-L-arabinofuranosidase C-terminus XM40_12825 SM00893 Electron transfer flavoprotein domain XM40_12830 SM00893 Electron transfer flavoprotein domain XM40_12860 SM00463 Small MutS-related domain XM40_12860 SM00533 DNA-binding domain of DNA mismatch repair MUTS family XM40_12860 SM00534 ATPase domain of DNA mismatch repair MUTS family XM40_12865 SM00278 Helix-hairpin-helix DNA-binding motif class 1 XM40_12865 SM00481 DNA polymerase alpha chain like domain XM40_12865 SM00483 DNA polymerase X family XM40_12885 SM00873 B3/4 domain XM40_12885 SM00874 tRNA synthetase B5 domain XM40_12885 SM00896 Ferredoxin-fold anticodon binding domain XM40_12895 SM00967 RNA 2'-O ribose methyltransferase substrate binding XM40_12925 SM00813 Alpha-L-arabinofuranosidase C-terminus XM40_12955 SM01007 Class II Aldolase and Adducin N-terminal domain XM40_13015 SM00448 cheY-homologous receiver domain XM40_13015 SM00850 LytTr DNA-binding domain XM40_13020 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XM40_13020 SM00387 Histidine kinase-like ATPases XM40_13030 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain XM40_13045 SM00382 ATPases associated with a variety of cellular activities XM40_13065 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain XM40_13095 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain XM40_13095 SM01232 XM40_13095 XM40_13100 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs XM40_13100 SM00474 3'-5' exonuclease XM40_13100 SM00475 5'-3' exonuclease XM40_13100 SM00482 DNA polymerase A domain XM40_13105 SM00091 PAS domain XM40_13105 SM00387 Histidine kinase-like ATPases XM40_13105 SM00388 His Kinase A (phosphoacceptor) domain XM40_13110 SM00448 cheY-homologous receiver domain XM40_13110 SM00862 Transcriptional regulatory protein, C terminal XM40_13120 SM01329 XM40_13120 XM40_13175 SM00919 Malic enzyme, NAD binding domain XM40_13175 SM01274 XM40_13175 XM40_13180 SM00481 DNA polymerase alpha chain like domain XM40_13210 SM00116 Domain in cystathionine beta-synthase and other proteins. XM40_13215 SM00849 Metallo-beta-lactamase superfamily XM40_13235 SM00852 Probable molybdopterin binding domain XM40_13295 SM00981 XM40_13295 XM40_13330 SM00267 diguanylate cyclase XM40_13335 SM00363 S4 RNA-binding domain XM40_13335 SM01390 XM40_13335 XM40_13345 SM00860 SMI1 / KNR4 family XM40_13395 SM00363 S4 RNA-binding domain XM40_13410 SM00116 Domain in cystathionine beta-synthase and other proteins. XM40_13430 SM00354 helix_turn _helix lactose operon repressor XM40_13435 SM00830 Chorismate mutase type II XM40_13460 SM00382 ATPases associated with a variety of cellular activities XM40_13460 SM00843 XM40_13460 XM40_13495 SM00919 Malic enzyme, NAD binding domain XM40_13495 SM01274 XM40_13495 XM40_13500 SM00849 Metallo-beta-lactamase superfamily XM40_13520 SM00046 Diacylglycerol kinase catalytic domain (presumed) XM40_13555 SM00382 ATPases associated with a variety of cellular activities XM40_13560 SM00420 helix_turn_helix, Deoxyribose operon repressor XM40_13565 SM00363 S4 RNA-binding domain XM40_13590 SM00354 helix_turn _helix lactose operon repressor XM40_13620 SM00450 Rhodanese Homology Domain XM40_13635 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XM40_13635 SM00091 PAS domain XM40_13655 SM00382 ATPases associated with a variety of cellular activities XM40_13660 SM00387 Histidine kinase-like ATPases XM40_13665 SM00448 cheY-homologous receiver domain XM40_13665 SM00862 Transcriptional regulatory protein, C terminal XM40_13675 SM00382 ATPases associated with a variety of cellular activities XM40_13695 SM00382 ATPases associated with a variety of cellular activities XM40_13700 SM00345 helix_turn_helix gluconate operon transcriptional repressor XM40_13710 SM00729 Elongator protein 3, MiaB family, Radical SAM XM40_13780 SM00382 ATPases associated with a variety of cellular activities XM40_13820 SM01234 XM40_13820 XM40_13825 SM00947 Carbonic anhydrase XM40_13845 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain XM40_14015 SM00244 prohibitin homologues XM40_14060 SM00047 Lysozyme subfamily 2 XM40_14070 SM00835 Cupin XM40_14105 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XM40_14105 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XM40_14105 SM00319 Homologues of the ligand binding domain of Tar XM40_14110 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XM40_14110 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XM40_14110 SM00319 Homologues of the ligand binding domain of Tar XM40_14115 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XM40_14115 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XM40_14115 SM00319 Homologues of the ligand binding domain of Tar XM40_14120 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XM40_14120 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XM40_14120 SM00319 Homologues of the ligand binding domain of Tar XM40_14145 SM00642 Alpha-amylase domain XM40_14150 SM01091 Transporter associated domain XM40_14215 SM00316 Ribosomal protein S1-like RNA-binding domain XM40_14225 SM00344 helix_turn_helix ASNC type XM40_14245 SM00387 Histidine kinase-like ATPases XM40_14245 SM00388 His Kinase A (phosphoacceptor) domain XM40_14250 SM01298 XM40_14250 XM40_14255 SM00479 XM40_14255 XM40_14280 SM00091 PAS domain XM40_14280 SM00387 Histidine kinase-like ATPases XM40_14285 SM00448 cheY-homologous receiver domain XM40_14295 SM00382 ATPases associated with a variety of cellular activities XM40_14355 SM00421 helix_turn_helix, Lux Regulon XM40_14355 SM00448 cheY-homologous receiver domain XM40_14360 SM00387 Histidine kinase-like ATPases XM40_14385 SM00052 Putative diguanylate phosphodiesterase XM40_14425 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. XM40_14470 SM01002 Alanine dehydrogenase/PNT, C-terminal domain XM40_14470 SM01003 Alanine dehydrogenase/PNT, N-terminal domain XM40_14480 SM00923 MbtH-like protein XM40_14485 SM00823 Phosphopantetheine attachment site XM40_14485 SM00824 Thioesterase XM40_14505 SM00822 XM40_14505 XM40_14565 SM01240 XM40_14565 XM40_14580 SM00382 ATPases associated with a variety of cellular activities XM40_14690 SM00729 Elongator protein 3, MiaB family, Radical SAM XM40_14775 SM00382 ATPases associated with a variety of cellular activities XM40_14780 SM00345 helix_turn_helix gluconate operon transcriptional repressor XM40_14780 SM00866 XM40_14780 XM40_14815 SM00465 GIY-YIG type nucleases (URI domain) XM40_14855 SM00382 ATPases associated with a variety of cellular activities XM40_14875 SM00382 ATPases associated with a variety of cellular activities XM40_14875 SM00930 XM40_14875 XM40_14890 SM00493 XM40_14890 XM40_14940 SM00347 helix_turn_helix multiple antibiotic resistance protein XM40_14970 SM00382 ATPases associated with a variety of cellular activities XM40_14995 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. XM40_15000 SM00448 cheY-homologous receiver domain XM40_15000 SM00862 Transcriptional regulatory protein, C terminal XM40_15005 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XM40_15005 SM00387 Histidine kinase-like ATPases XM40_15005 SM00388 His Kinase A (phosphoacceptor) domain XM40_15040 SM00421 helix_turn_helix, Lux Regulon XM40_15040 SM00448 cheY-homologous receiver domain XM40_15045 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XM40_15045 SM00387 Histidine kinase-like ATPases XM40_15080 SM00382 ATPases associated with a variety of cellular activities XM40_15105 SM00387 Histidine kinase-like ATPases XM40_15105 SM00388 His Kinase A (phosphoacceptor) domain XM40_15110 SM00448 cheY-homologous receiver domain XM40_15110 SM00862 Transcriptional regulatory protein, C terminal XM40_15125 SM00835 Cupin XM40_15135 SM00382 ATPases associated with a variety of cellular activities XM40_15195 SM00421 helix_turn_helix, Lux Regulon XM40_15195 SM00448 cheY-homologous receiver domain XM40_15205 SM00382 ATPases associated with a variety of cellular activities XM40_15305 SM00530 Helix-turn-helix XRE-family like proteins XM40_15340 SM00382 ATPases associated with a variety of cellular activities XM40_15355 SM00062 Bacterial periplasmic substrate-binding proteins XM40_15360 SM00062 Bacterial periplasmic substrate-binding proteins XM40_15390 SM00316 Ribosomal protein S1-like RNA-binding domain XM40_15390 SM00357 Cold shock protein domain XM40_15390 SM00955 XM40_15390 XM40_15405 SM00530 Helix-turn-helix XRE-family like proteins XM40_15410 SM00530 Helix-turn-helix XRE-family like proteins XM40_15415 SM00530 Helix-turn-helix XRE-family like proteins XM40_15425 SM00387 Histidine kinase-like ATPases XM40_15425 SM00388 His Kinase A (phosphoacceptor) domain XM40_15430 SM00448 cheY-homologous receiver domain XM40_15430 SM00862 Transcriptional regulatory protein, C terminal XM40_15445 SM00382 ATPases associated with a variety of cellular activities XM40_15465 SM00116 Domain in cystathionine beta-synthase and other proteins. XM40_15465 SM00382 ATPases associated with a variety of cellular activities XM40_15490 SM00116 Domain in cystathionine beta-synthase and other proteins. XM40_15490 SM00382 ATPases associated with a variety of cellular activities XM40_15560 SM00984 UDP binding domain XM40_15570 SM01192 XM40_15570 XM40_15570 SM01193 XM40_15570 XM40_15595 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain XM40_15610 SM00345 helix_turn_helix gluconate operon transcriptional repressor XM40_15675 SM00345 helix_turn_helix gluconate operon transcriptional repressor XM40_15675 SM00895 XM40_15675 XM40_15770 SM00530 Helix-turn-helix XRE-family like proteins XM40_15840 SM00640 Glycosyl hydrolases family 32 XM40_15850 SM00354 helix_turn _helix lactose operon repressor XM40_15890 SM00947 Carbonic anhydrase XM40_15950 SM00028 Tetratricopeptide repeats XM40_15955 SM00387 Histidine kinase-like ATPases XM40_15955 SM00388 His Kinase A (phosphoacceptor) domain XM40_15960 SM00448 cheY-homologous receiver domain XM40_15960 SM00862 Transcriptional regulatory protein, C terminal XM40_15970 SM00382 ATPases associated with a variety of cellular activities XM40_16050 SM00345 helix_turn_helix gluconate operon transcriptional repressor XM40_16050 SM00866 XM40_16050 XM40_16090 SM00382 ATPases associated with a variety of cellular activities XM40_16095 SM00487 DEAD-like helicases superfamily XM40_16095 SM00490 helicase superfamily c-terminal domain XM40_16140 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. XM40_16150 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. XM40_16150 SM00245 tail specific protease XM40_16155 SM00710 Parallel beta-helix repeats XM40_16165 SM00382 ATPases associated with a variety of cellular activities XM40_16180 SM00937 XM40_16180 XM40_16185 SM00957 SecA DEAD-like domain XM40_16185 SM00958 SecA preprotein cross-linking domain XM40_16270 SM00487 DEAD-like helicases superfamily XM40_16270 SM00490 helicase superfamily c-terminal domain XM40_16280 SM00421 helix_turn_helix, Lux Regulon XM40_16280 SM00448 cheY-homologous receiver domain XM40_16285 SM00387 Histidine kinase-like ATPases XM40_16325 SM00984 UDP binding domain XM40_16345 SM00646 XM40_16345 XM40_16375 SM00382 ATPases associated with a variety of cellular activities XM40_16410 SM00047 Lysozyme subfamily 2 XM40_16410 SM00287 Bacterial SH3 domain homologues XM40_16465 SM00854 Bacterial capsule synthesis protein PGA_cap XM40_16495 SM00354 helix_turn _helix lactose operon repressor XM40_16510 SM00382 ATPases associated with a variety of cellular activities XM40_16525 SM00287 Bacterial SH3 domain homologues XM40_16575 SM00903 Flavin reductase like domain XM40_16590 SM00344 helix_turn_helix ASNC type XM40_16655 SM00984 UDP binding domain XM40_16680 SM00487 DEAD-like helicases superfamily XM40_16680 SM00490 helicase superfamily c-terminal domain XM40_16690 SM00420 helix_turn_helix, Deoxyribose operon repressor XM40_16690 SM01134 XM40_16690 XM40_16720 SM00028 Tetratricopeptide repeats XM40_16745 SM00347 helix_turn_helix multiple antibiotic resistance protein XM40_16775 SM00938 Nitrogen regulatory protein P-II XM40_16785 SM00014 Acid phosphatase homologues XM40_16815 SM00155 Phospholipase D. Active site motifs. XM40_16865 SM00028 Tetratricopeptide repeats XM40_16870 SM00729 Elongator protein 3, MiaB family, Radical SAM XM40_16880 SM00327 von Willebrand factor (vWF) type A domain XM40_16885 SM00327 von Willebrand factor (vWF) type A domain XM40_16920 SM00382 ATPases associated with a variety of cellular activities XM40_16980 SM00226 Low molecular weight phosphatase family XM40_17020 SM00937 XM40_17020 XM40_17040 SM00919 Malic enzyme, NAD binding domain XM40_17040 SM01274 XM40_17040 XM40_17055 SM00357 Cold shock protein domain XM40_17055 SM00382 ATPases associated with a variety of cellular activities XM40_17055 SM00959 Rho termination factor, N-terminal domain XM40_17080 SM00448 cheY-homologous receiver domain XM40_17105 SM00155 Phospholipase D. Active site motifs. XM40_17120 SM00382 ATPases associated with a variety of cellular activities XM40_17125 SM00155 Phospholipase D. Active site motifs. XM40_17150 SM00926 Molybdopterin oxidoreductase Fe4S4 domain XM40_17165 SM00100 Cyclic nucleotide-monophosphate binding domain XM40_17165 SM00419 helix_turn_helix, cAMP Regulatory protein XM40_17175 SM00836 DALR anticodon binding domain XM40_17175 SM01016 Arginyl tRNA synthetase N terminal dom XM40_17185 SM00028 Tetratricopeptide repeats XM40_17190 SM00530 Helix-turn-helix XRE-family like proteins XM40_17215 SM00421 helix_turn_helix, Lux Regulon XM40_17255 SM00347 helix_turn_helix multiple antibiotic resistance protein XM40_17275 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. XM40_17385 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase XM40_17425 SM00858 XM40_17425 XM40_17470 SM00986 Uracil DNA glycosylase superfamily XM40_17470 SM00987 UreE urease accessory protein, C-terminal domain XM40_17505 SM00640 Glycosyl hydrolases family 32 XM40_17515 SM01061 CAT RNA binding domain XM40_17540 SM00382 ATPases associated with a variety of cellular activities XM40_17675 SM00422 helix_turn_helix, mercury resistance XM40_17680 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase XM40_17705 SM00954 Region found in RelA / SpoT proteins XM40_17790 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor XM40_17835 SM01060 XM40_17835 XM40_17855 SM00382 ATPases associated with a variety of cellular activities XM40_17860 SM00382 ATPases associated with a variety of cellular activities XM40_17885 SM00382 ATPases associated with a variety of cellular activities XM40_17950 SM01060 XM40_17950 XM40_17975 SM00487 DEAD-like helicases superfamily XM40_17975 SM00490 helicase superfamily c-terminal domain XM40_18040 SM00656 XM40_18040 XM40_18070 SM00901 XM40_18070 XM40_18110 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain XM40_18120 SM01133 XM40_18120 XM40_18175 SM00382 ATPases associated with a variety of cellular activities XM40_18180 SM00387 Histidine kinase-like ATPases XM40_18185 SM00448 cheY-homologous receiver domain XM40_18185 SM00862 Transcriptional regulatory protein, C terminal XM40_18240 SM00420 helix_turn_helix, Deoxyribose operon repressor XM40_18240 SM01134 XM40_18240 XM40_18255 SM00387 Histidine kinase-like ATPases XM40_18270 SM00421 helix_turn_helix, Lux Regulon XM40_18270 SM00448 cheY-homologous receiver domain XM40_18300 SM00564 beta-propeller repeat XM40_18310 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor XM40_18355 SM01092 CO dehydrogenase flavoprotein C-terminal domain XM40_18425 SM00028 Tetratricopeptide repeats XM40_18450 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor XM40_18455 SM00382 ATPases associated with a variety of cellular activities XM40_18460 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. XM40_18465 SM00382 ATPases associated with a variety of cellular activities XM40_18485 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XM40_18485 SM00387 Histidine kinase-like ATPases XM40_18485 SM00388 His Kinase A (phosphoacceptor) domain XM40_18495 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. XM40_18500 SM00849 Metallo-beta-lactamase superfamily XM40_18515 SM00091 PAS domain XM40_18515 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XM40_18515 SM00387 Histidine kinase-like ATPases XM40_18515 SM00388 His Kinase A (phosphoacceptor) domain XM40_18520 SM00448 cheY-homologous receiver domain XM40_18520 SM00862 Transcriptional regulatory protein, C terminal XM40_18550 SM00788 Adenylosuccinate synthetase XM40_18560 SM00382 ATPases associated with a variety of cellular activities XM40_18615 SM00267 diguanylate cyclase XM40_18640 SM01131 XM40_18640 XM40_18655 SM00640 Glycosyl hydrolases family 32 XM40_18660 SM00345 helix_turn_helix gluconate operon transcriptional repressor XM40_18660 SM00895 XM40_18660 XM40_18685 SM00347 helix_turn_helix multiple antibiotic resistance protein XM40_18695 SM00347 helix_turn_helix multiple antibiotic resistance protein XM40_18725 SM00345 helix_turn_helix gluconate operon transcriptional repressor XM40_18770 SM00354 helix_turn _helix lactose operon repressor XM40_18785 SM00342 helix_turn_helix, arabinose operon control protein XM40_18810 SM00926 Molybdopterin oxidoreductase Fe4S4 domain XM40_18835 SM00470 ParB-like nuclease domain XM40_18845 SM00470 ParB-like nuclease domain XM40_18855 SM01228 XM40_18855 XM40_18865 SM00393 Putative single-stranded nucleic acids-binding domain XM40_18865 SM01245 XM40_18865 XM40_18880 SM00382 ATPases associated with a variety of cellular activities XM40_18880 SM00760 Bacterial dnaA protein helix-turn-helix domain XM40_18885 SM00480 DNA polymerase III beta subunit XM40_18905 SM00387 Histidine kinase-like ATPases XM40_18905 SM00433 TopoisomeraseII XM40_18910 SM00434 DNA Topoisomerase IV