locus-tag class description LL3_00001 IPR018312 Chromosomal replication control, initiator DnaA, conserved site LL3_00001 IPR003593 AAA+ ATPase domain LL3_00001 IPR001957 Chromosomal replication control, initiator DnaA LL3_00001 IPR010921 Trp repressor/replication initiator LL3_00001 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00001 IPR038454 DnaA, N-terminal domain superfamily LL3_00001 IPR024633 DnaA N-terminal domain LL3_00001 IPR013159 Chromosomal replication initiator, DnaA C-terminal LL3_00001 IPR013317 Chromosomal replication initiator protein DnaA LL3_00001 IPR020591 Chromosomal replication control, initiator DnaA-like LL3_00002 IPR001001 DNA polymerase III, beta sliding clamp LL3_00002 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal LL3_00002 IPR022637 DNA polymerase III, beta sliding clamp, central LL3_00002 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal LL3_00003 IPR002942 RNA-binding S4 domain LL3_00003 IPR014330 RNA-binding S4-related,YaaA LL3_00003 IPR036986 RNA-binding S4 domain superfamily LL3_00004 IPR003395 RecF/RecN/SMC, N-terminal LL3_00004 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00004 IPR018078 DNA-binding, RecF, conserved site LL3_00004 IPR001238 DNA-binding, RecF LL3_00004 IPR042174 DNA-binding RecF, domain 2 LL3_00005 IPR007169 Extracellular matrix regulatory protein A LL3_00006 IPR013760 DNA topoisomerase, type IIA-like domain superfamily LL3_00006 IPR002288 DNA gyrase B subunit, C-terminal LL3_00006 IPR011557 DNA gyrase, subunit B LL3_00006 IPR001241 DNA topoisomerase, type IIA LL3_00006 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_00006 IPR003594 Histidine kinase/HSP90-like ATPase LL3_00006 IPR006171 TOPRIM domain LL3_00006 IPR034160 DNA gyrase subunit B, TOPRIM domain LL3_00006 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup LL3_00006 IPR020568 Ribosomal protein S5 domain 2-type fold LL3_00006 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 LL3_00006 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal LL3_00006 IPR018522 DNA topoisomerase, type IIA, conserved site LL3_00007 IPR005743 DNA gyrase, subunit A LL3_00007 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal LL3_00007 IPR013760 DNA topoisomerase, type IIA-like domain superfamily LL3_00007 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal LL3_00007 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat LL3_00007 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta LL3_00007 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily LL3_00008 IPR026988 YaaC-like protein LL3_00009 IPR015875 IMP dehydrogenase / GMP reductase, conserved site LL3_00009 IPR005990 Inosine-5'-monophosphate dehydrogenase LL3_00009 IPR000644 CBS domain LL3_00009 IPR013785 Aldolase-type TIM barrel LL3_00009 IPR001093 IMP dehydrogenase/GMP reductase LL3_00010 IPR015956 Penicillin-binding protein, C-terminal domain superfamily LL3_00010 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal LL3_00010 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal LL3_00010 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A LL3_00010 IPR012338 Beta-lactamase/transpeptidase-like LL3_00010 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily LL3_00011 IPR013785 Aldolase-type TIM barrel LL3_00011 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ LL3_00011 IPR011060 Ribulose-phosphate binding barrel LL3_00011 IPR033755 PdxS/SNZ N-terminal domain LL3_00012 IPR021196 PdxT/SNO family, conserved site LL3_00012 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO LL3_00012 IPR029062 Class I glutamine amidotransferase-like LL3_00013 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm LL3_00013 IPR033729 Serine-tRNA ligase catalytic core domain LL3_00013 IPR042103 Serine-tRNA synthetase, type1, N-terminal domain superfamily LL3_00013 IPR015866 Serine-tRNA synthetase, type1, N-terminal LL3_00013 IPR006195 Aminoacyl-tRNA synthetase, class II LL3_00013 IPR002317 Serine-tRNA ligase, type1 LL3_00013 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) LL3_00014 IPR036129 Glycerate kinase superfamily LL3_00014 IPR018193 Glycerate kinase, flavodoxin-like fold LL3_00014 IPR004381 Glycerate kinase LL3_00014 IPR018197 Glycerate kinase, restriction-enzyme-like fold LL3_00015 IPR002624 Deoxynucleoside kinase LL3_00015 IPR031314 Deoxynucleoside kinase domain LL3_00015 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00016 IPR002624 Deoxynucleoside kinase LL3_00016 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00016 IPR031314 Deoxynucleoside kinase domain LL3_00017 IPR001223 Glycoside hydrolase family 18, catalytic domain LL3_00017 IPR041704 CFLE, GH18 catalytic domain LL3_00017 IPR036779 LysM domain superfamily LL3_00017 IPR018392 LysM domain LL3_00017 IPR029070 Chitinase insertion domain superfamily LL3_00017 IPR017853 Glycoside hydrolase superfamily LL3_00017 IPR011583 Chitinase II LL3_00018 IPR036380 Isochorismatase-like superfamily LL3_00018 IPR000868 Isochorismatase-like LL3_00019 IPR002125 Cytidine and deoxycytidylate deaminase domain LL3_00019 IPR016193 Cytidine deaminase-like LL3_00019 IPR028883 tRNA-specific adenosine deaminase LL3_00019 IPR016192 APOBEC/CMP deaminase, zinc-binding LL3_00021 IPR001270 ClpA/B family LL3_00021 IPR012763 DNA polymerase III, subunit gamma/ tau LL3_00021 IPR022754 DNA polymerase III, gamma subunit, domain III LL3_00021 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00021 IPR003593 AAA+ ATPase domain LL3_00021 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal LL3_00022 IPR004401 Nucleoid-associated protein YbaB/EbfC family LL3_00022 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily LL3_00023 IPR000093 DNA recombination protein RecR LL3_00023 IPR023627 Recombination protein RecR LL3_00023 IPR015967 Recombination protein RecR, conserved site LL3_00023 IPR023628 Recombination protein RecR, C4-type zinc finger LL3_00023 IPR006171 TOPRIM domain LL3_00023 IPR034137 RecR, TOPRIM domain LL3_00024 IPR019644 Protein of unknown function DUF2508 LL3_00025 IPR010001 SigmaK-factor processing regulatory BofA LL3_00026 IPR019700 Anti-sigma-G factor Gin LL3_00027 IPR018770 5-bromo-4-chloroindolyl phosphate hydrolysis protein LL3_00028 IPR008863 Toxic anion resistance LL3_00029 IPR000310 Orn/Lys/Arg decarboxylase, major domain LL3_00029 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal LL3_00029 IPR015424 Pyridoxal phosphate-dependent transferase LL3_00029 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_00029 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily LL3_00030 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00030 IPR039430 Thymidylate kinase-like domain LL3_00030 IPR018095 Thymidylate kinase, conserved site LL3_00030 IPR018094 Thymidylate kinase LL3_00031 IPR010375 Cyclic-di-AMP receptor LL3_00031 IPR011322 Nitrogen regulatory PII-like, alpha/beta LL3_00031 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal LL3_00032 IPR024042 TM1646-like domain superfamily LL3_00032 IPR005585 Protein of unknown function DUF327 LL3_00033 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00033 IPR004622 DNA polymerase III, delta prime subunit LL3_00033 IPR015199 DNA polymerase III, delta subunit, C-terminal LL3_00034 IPR007557 PSP1, C-terminal LL3_00035 IPR010377 Initiation control protein YabA LL3_00036 IPR007848 Methyltransferase small domain LL3_00036 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_00037 IPR000305 GIY-YIG endonuclease LL3_00037 IPR035901 GIY-YIG endonuclease superfamily LL3_00038 IPR000878 Tetrapyrrole methylase LL3_00038 IPR014776 Tetrapyrrole methylase, subdomain 2 LL3_00038 IPR035996 Tetrapyrrole methylase superfamily LL3_00038 IPR014777 Tetrapyrrole methylase, subdomain 1 LL3_00038 IPR018063 SAM-dependent methyltransferase RsmI, conserved site LL3_00038 IPR008189 rRNA small subunit methyltransferase I LL3_00039 IPR037914 SpoVT-AbrB domain superfamily LL3_00039 IPR040678 AbrB, C-terminal LL3_00039 IPR007159 SpoVT-AbrB domain LL3_00040 IPR041872 Methionyl-tRNA synthetase, anticodon-binding domain LL3_00040 IPR014758 Methionyl-tRNA synthetase LL3_00040 IPR023457 Methionine-tRNA synthetase, type 2 LL3_00040 IPR015413 Methionyl/Leucyl tRNA synthetase LL3_00040 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site LL3_00040 IPR033911 Methioninyl-tRNA synthetase core domain LL3_00040 IPR012340 Nucleic acid-binding, OB-fold LL3_00040 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LL3_00040 IPR002547 tRNA-binding domain LL3_00040 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding LL3_00040 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding LL3_00040 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal LL3_00041 IPR018228 Deoxyribonuclease, TatD-related, conserved site LL3_00041 IPR032466 Metal-dependent hydrolase LL3_00041 IPR015991 Uncharacterised hydrolase TatD-type LL3_00041 IPR001130 TatD family LL3_00042 IPR036908 RlpA-like domain superfamily LL3_00042 IPR011098 G5 domain LL3_00042 IPR010611 3D domain LL3_00042 IPR007137 Resuscitation-promoting factor, domain of unknown function DUF348 LL3_00043 IPR034141 Ribonuclease M5-like, TOPRIM domain LL3_00043 IPR004466 Ribonuclease M5 LL3_00043 IPR025156 Ribonuclease M5, C-terminal domain LL3_00043 IPR006171 TOPRIM domain LL3_00044 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm LL3_00044 IPR023165 rRNA adenine dimethylase-like LL3_00044 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site LL3_00044 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_00044 IPR011530 Ribosomal RNA adenine dimethylase LL3_00044 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal LL3_00045 IPR008764 Peptidase U57, YabG LL3_00046 IPR009366 Protein Veg LL3_00047 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site LL3_00047 IPR001448 Small acid-soluble spore protein, alpha/beta-type LL3_00047 IPR038300 SASP, alpha/beta-type superfamily LL3_00048 IPR013750 GHMP kinase, C-terminal domain LL3_00048 IPR036554 GHMP kinase, C-terminal domain superfamily LL3_00048 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase LL3_00048 IPR020568 Ribosomal protein S5 domain 2-type fold LL3_00048 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup LL3_00048 IPR006204 GHMP kinase N-terminal domain LL3_00049 IPR036390 Winged helix DNA-binding domain superfamily LL3_00049 IPR000836 Phosphoribosyltransferase domain LL3_00049 IPR010078 Pur operon repressor LL3_00049 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00049 IPR015265 Bacterial purine repressor, N-terminal LL3_00049 IPR029057 Phosphoribosyltransferase-like LL3_00050 IPR019897 RidA, conserved site LL3_00050 IPR035959 RutC-like superfamily LL3_00050 IPR006056 RidA family LL3_00050 IPR006175 YjgF/YER057c/UK114 family LL3_00051 IPR036751 Stage V sporulation protein G superfamily LL3_00051 IPR007170 Stage V sporulation protein G LL3_00052 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase LL3_00052 IPR011004 Trimeric LpxA-like superfamily LL3_00052 IPR038009 GlmU, C-terminal LbH domain LL3_00052 IPR018357 Hexapeptide transferase, conserved site LL3_00052 IPR005835 Nucleotidyl transferase domain LL3_00052 IPR029044 Nucleotide-diphospho-sugar transferases LL3_00052 IPR001451 Hexapeptide repeat LL3_00053 IPR000836 Phosphoribosyltransferase domain LL3_00053 IPR029057 Phosphoribosyltransferase-like LL3_00053 IPR005946 Ribose-phosphate pyrophosphokinase LL3_00053 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site LL3_00053 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain LL3_00053 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type LL3_00054 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal LL3_00054 IPR037121 Ribosomal protein L25, C-terminal LL3_00054 IPR001021 Ribosomal protein L25, long-form LL3_00054 IPR020057 Ribosomal protein L25, beta domain LL3_00054 IPR029751 Ribosomal protein L25 LL3_00054 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily LL3_00055 IPR018171 Peptidyl-tRNA hydrolase, conserved site LL3_00055 IPR001328 Peptidyl-tRNA hydrolase LL3_00055 IPR036416 Peptidyl-tRNA hydrolase superfamily LL3_00056 IPR020115 Anti-sigma-F factor Fin LL3_00057 IPR011545 DEAD/DEAH box helicase domain LL3_00057 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00057 IPR004576 Transcription-repair coupling factor LL3_00057 IPR041471 UvrB, interaction domain LL3_00057 IPR003711 CarD-like/TRCF domain LL3_00057 IPR037235 TRCF-like, C-terminal domain LL3_00057 IPR005118 Transcription-repair-coupling factor, C-terminal domain LL3_00057 IPR036101 CarD-like/TRCF domain superfamily LL3_00057 IPR014001 Helicase superfamily 1/2, ATP-binding domain LL3_00057 IPR001650 Helicase, C-terminal LL3_00058 IPR014213 Sporulation stage V, protein T LL3_00058 IPR029016 GAF-like domain superfamily LL3_00058 IPR007159 SpoVT-AbrB domain LL3_00058 IPR037914 SpoVT-AbrB domain superfamily LL3_00058 IPR039472 Sporulation stage V protein T, GAF domain LL3_00059 IPR002797 Polysaccharide biosynthesis protein LL3_00059 IPR024923 Peptidoglycan biosynthesis protein, SpoVB-type LL3_00059 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain LL3_00060 IPR000878 Tetrapyrrole methylase LL3_00060 IPR035996 Tetrapyrrole methylase superfamily LL3_00060 IPR035013 YabN, N-terminal LL3_00060 IPR024180 Bifunctional tetrapyrrole methylase/MazG NTP pyrophosphohydrolase, predicted LL3_00060 IPR011551 NTP pyrophosphohydrolase MazG LL3_00060 IPR014777 Tetrapyrrole methylase, subdomain 1 LL3_00060 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core LL3_00061 IPR002942 RNA-binding S4 domain LL3_00061 IPR025490 RNA-binding protein, HP1423 type LL3_00061 IPR036986 RNA-binding S4 domain superfamily LL3_00062 IPR038705 YabP superfamily LL3_00062 IPR022476 Sporulation protein YabP/YqfC LL3_00062 IPR012504 Sporulation protein YabP LL3_00063 IPR019074 Spore cortex biosynthesis protein, YabQ-like LL3_00063 IPR014242 Spore cortex biosynthesis protein, YabQ LL3_00064 IPR039076 Cell division protein DivIC LL3_00064 IPR007060 Septum formation initiator FtsL/DivIC LL3_00065 IPR003029 S1 domain LL3_00065 IPR012340 Nucleic acid-binding, OB-fold LL3_00065 IPR022967 RNA-binding domain, S1 LL3_00066 IPR036457 PPM-type phosphatase domain superfamily LL3_00066 IPR014221 Sporulation stage II, protein E LL3_00066 IPR001932 PPM-type phosphatase domain LL3_00067 IPR036465 von Willebrand factor A-like domain superfamily LL3_00067 IPR002035 von Willebrand factor, type A LL3_00068 IPR011009 Protein kinase-like domain superfamily LL3_00068 IPR000719 Protein kinase domain LL3_00068 IPR017441 Protein kinase, ATP binding site LL3_00069 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal LL3_00069 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LL3_00069 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal LL3_00069 IPR012094 tRNA(Ile)-lysidine synthase LL3_00069 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal LL3_00069 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain LL3_00071 IPR003593 AAA+ ATPase domain LL3_00071 IPR037219 Peptidase M41-like LL3_00071 IPR000642 Peptidase M41 LL3_00071 IPR011546 Peptidase M41, FtsH extracellular LL3_00071 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00071 IPR005936 Peptidase, FtsH LL3_00071 IPR003960 ATPase, AAA-type, conserved site LL3_00071 IPR003959 ATPase, AAA-type, core LL3_00071 IPR041569 AAA ATPase, AAA+ lid domain LL3_00072 IPR004619 Type III pantothenate kinase LL3_00073 IPR000397 Heat shock protein Hsp33 LL3_00073 IPR016154 Heat shock protein Hsp33, C-terminal LL3_00073 IPR016153 Heat shock protein Hsp33, N-terminal LL3_00074 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type LL3_00074 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site LL3_00074 IPR027304 Trigger factor/SurA domain superfamily LL3_00075 IPR005856 Cysteine synthase LL3_00075 IPR001926 Pyridoxal-phosphate dependent enzyme LL3_00075 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme LL3_00075 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site LL3_00075 IPR005859 Cysteine synthase CysK LL3_00076 IPR019999 Anthranilate synthase component I-like LL3_00076 IPR005801 ADC synthase LL3_00076 IPR006805 Anthranilate synthase component I, N-terminal LL3_00076 IPR015890 Chorismate-utilising enzyme, C-terminal LL3_00077 IPR029062 Class I glutamine amidotransferase-like LL3_00077 IPR017926 Glutamine amidotransferase LL3_00077 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain LL3_00078 IPR017824 Aminodeoxychorismate lyase, class IV LL3_00078 IPR001544 Aminotransferase class IV LL3_00078 IPR018300 Aminotransferase, class IV, conserved site LL3_00078 IPR036038 Aminotransferase-like, PLP-dependent enzymes LL3_00079 IPR011005 Dihydropteroate synthase-like LL3_00079 IPR006390 Dihydropteroate synthase LL3_00079 IPR000489 Pterin-binding domain LL3_00080 IPR006156 Dihydroneopterin aldolase LL3_00080 IPR006157 Dihydroneopterin aldolase/epimerase domain LL3_00081 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK LL3_00081 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily LL3_00082 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LL3_00082 IPR001387 Cro/C1-type helix-turn-helix domain LL3_00083 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal LL3_00083 IPR035587 DUS-like, FMN-binding domain LL3_00083 IPR013785 Aldolase-type TIM barrel LL3_00083 IPR018517 tRNA-dihydrouridine synthase, conserved site LL3_00083 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 LL3_00083 IPR001269 tRNA-dihydrouridine synthase LL3_00084 IPR034762 Bacterial/eukaryotic lysine-tRNA ligase, class II LL3_00084 IPR006195 Aminoacyl-tRNA synthetase, class II LL3_00084 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) LL3_00084 IPR012340 Nucleic acid-binding, OB-fold LL3_00084 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type LL3_00084 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal LL3_00084 IPR002313 Lysine-tRNA ligase, class II LL3_00085 IPR041473 CtsR, C-terminal dimerization domain LL3_00085 IPR008463 Transcriptional regulator CtsR LL3_00085 IPR041908 CtsR, C-terminal domain superfamily LL3_00085 IPR040465 CtsR, N-terminal HTH domain LL3_00085 IPR041902 CtsR, N-terminal domain superfamily LL3_00086 IPR036876 UVR domain superfamily LL3_00086 IPR001943 UVR domain LL3_00086 IPR025542 YacH protein LL3_00087 IPR022415 ATP:guanido phosphotransferase active site LL3_00087 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain LL3_00087 IPR023660 Protein arginine kinase LL3_00087 IPR022414 ATP:guanido phosphotransferase, catalytic domain LL3_00087 IPR000749 ATP:guanido phosphotransferase LL3_00088 IPR003593 AAA+ ATPase domain LL3_00088 IPR036628 Clp, N-terminal domain superfamily LL3_00088 IPR004176 Clp, N-terminal LL3_00088 IPR001270 ClpA/B family LL3_00088 IPR018368 ClpA/B, conserved site 1 LL3_00088 IPR028299 ClpA/B, conserved site 2 LL3_00088 IPR041546 ClpA/ClpB, AAA lid domain LL3_00088 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00088 IPR001943 UVR domain LL3_00088 IPR019489 Clp ATPase, C-terminal LL3_00088 IPR003959 ATPase, AAA-type, core LL3_00089 IPR003593 AAA+ ATPase domain LL3_00089 IPR004504 DNA repair protein RadA LL3_00089 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00089 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain LL3_00089 IPR041166 LapB, rubredoxin metal binding domain LL3_00089 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup LL3_00089 IPR020568 Ribosomal protein S5 domain 2-type fold LL3_00090 IPR010994 RuvA domain 2-like LL3_00090 IPR023763 DNA integrity scanning protein, DisA LL3_00090 IPR003390 DNA integrity scanning protein, DisA, N-terminal LL3_00090 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily LL3_00090 IPR038331 DisA, linker domain superfamily LL3_00090 IPR018906 DNA integrity scanning, DisA, linker region LL3_00091 IPR002716 PIN domain LL3_00091 IPR029060 PIN-like domain superfamily LL3_00091 IPR002792 TRAM domain LL3_00092 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LL3_00092 IPR034683 Cytidylyltransferase IspD/TarI LL3_00092 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site LL3_00092 IPR029044 Nucleotide-diphospho-sugar transferases LL3_00093 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily LL3_00093 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site LL3_00093 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase LL3_00094 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 LL3_00094 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site LL3_00094 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial LL3_00094 IPR000924 Glutamyl/glutaminyl-tRNA synthetase LL3_00094 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain LL3_00094 IPR033910 Glutamyl-tRNA synthetase LL3_00094 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LL3_00094 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding LL3_00096 IPR001451 Hexapeptide repeat LL3_00096 IPR018357 Hexapeptide transferase, conserved site LL3_00096 IPR010493 Serine acetyltransferase, N-terminal LL3_00096 IPR005881 Serine O-acetyltransferase LL3_00096 IPR011004 Trimeric LpxA-like superfamily LL3_00096 IPR042122 Serine acetyltransferase, N-terminal domain superfamily LL3_00097 IPR015803 Cysteine-tRNA ligase LL3_00097 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR LL3_00097 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase LL3_00097 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LL3_00097 IPR032678 tRNA synthetases class I, catalytic domain LL3_00097 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding LL3_00098 IPR036389 Ribonuclease III, endonuclease domain superfamily LL3_00098 IPR000999 Ribonuclease III domain LL3_00098 IPR008226 Mini-ribonuclease 3 family LL3_00099 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal LL3_00099 IPR013123 RNA 2-O ribose methyltransferase, substrate binding LL3_00099 IPR029028 Alpha/beta knot methyltransferases LL3_00099 IPR029064 50S ribosomal protein L30e-like LL3_00099 IPR004441 RNA methyltransferase TrmH family LL3_00099 IPR001537 tRNA/rRNA methyltransferase, SpoU type LL3_00100 IPR010298 Protein of unknown function DUF901 LL3_00101 IPR000792 Transcription regulator LuxR, C-terminal LL3_00101 IPR013324 RNA polymerase sigma factor, region 3/4-like LL3_00101 IPR016371 RNA polymerase sigma-H factor LL3_00101 IPR014218 RNA polymerase sigma-H type LL3_00101 IPR013325 RNA polymerase sigma factor, region 2 LL3_00101 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 LL3_00101 IPR007627 RNA polymerase sigma-70 region 2 LL3_00101 IPR014284 RNA polymerase sigma-70 like domain LL3_00101 IPR000943 RNA polymerase sigma-70 LL3_00102 IPR001705 Ribosomal protein L33 LL3_00102 IPR038584 Ribosomal protein L33 superfamily LL3_00102 IPR011332 Zinc-binding ribosomal protein LL3_00102 IPR018264 Ribosomal protein L33, conserved site LL3_00103 IPR038379 SecE superfamily LL3_00103 IPR005807 SecE subunit of protein translocation complex, bacterial-like LL3_00103 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit LL3_00104 IPR008991 Translation protein SH3-like domain superfamily LL3_00104 IPR005824 KOW LL3_00104 IPR001062 Transcription antitermination protein, NusG LL3_00104 IPR014722 Ribosomal protein L2, domain 2 LL3_00104 IPR036735 NusG, N-terminal domain superfamily LL3_00104 IPR006645 NusG, N-terminal LL3_00104 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site LL3_00105 IPR020784 Ribosomal protein L11, N-terminal LL3_00105 IPR000911 Ribosomal protein L11/L12 LL3_00105 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily LL3_00105 IPR020783 Ribosomal protein L11, C-terminal LL3_00105 IPR036769 Ribosomal protein L11, C-terminal domain superfamily LL3_00105 IPR020785 Ribosomal protein L11, conserved site LL3_00105 IPR006519 Ribosomal protein L11, bacterial-type LL3_00106 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich LL3_00106 IPR002143 Ribosomal protein L1 LL3_00106 IPR023674 Ribosomal protein L1-like LL3_00106 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein LL3_00106 IPR023673 Ribosomal protein L1, conserved site LL3_00106 IPR005878 Ribosomal protein L1, bacterial-type LL3_00107 IPR002363 Ribosomal protein L10, eubacterial, conserved site LL3_00107 IPR001790 Ribosomal protein L10P LL3_00107 IPR022973 Ribosomal protein L10 LL3_00108 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily LL3_00108 IPR008932 Ribosomal protein L7/L12, oligomerisation LL3_00108 IPR013823 Ribosomal protein L7/L12, C-terminal LL3_00108 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like LL3_00108 IPR000206 Ribosomal protein L7/L12 LL3_00109 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_00109 IPR007848 Methyltransferase small domain LL3_00110 IPR014724 RNA polymerase Rpb2, OB-fold LL3_00110 IPR007641 RNA polymerase Rpb2, domain 7 LL3_00110 IPR007645 RNA polymerase Rpb2, domain 3 LL3_00110 IPR037034 RNA polymerase Rpb2, domain 2 superfamily LL3_00110 IPR007642 RNA polymerase Rpb2, domain 2 LL3_00110 IPR007644 RNA polymerase, beta subunit, protrusion LL3_00110 IPR015712 DNA-directed RNA polymerase, subunit 2 LL3_00110 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain LL3_00110 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain LL3_00110 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type LL3_00110 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily LL3_00110 IPR007121 RNA polymerase, beta subunit, conserved site LL3_00111 IPR038120 RNA polymerase Rpb1, funnel domain superfamily LL3_00111 IPR007081 RNA polymerase Rpb1, domain 5 LL3_00111 IPR042102 RNA polymerase Rpb1, domain 3 superfamily LL3_00111 IPR007066 RNA polymerase Rpb1, domain 3 LL3_00111 IPR007080 RNA polymerase Rpb1, domain 1 LL3_00111 IPR006592 RNA polymerase, N-terminal LL3_00111 IPR000722 RNA polymerase, alpha subunit LL3_00111 IPR012754 DNA-directed RNA polymerase, subunit beta-prime LL3_00111 IPR007083 RNA polymerase Rpb1, domain 4 LL3_00112 IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 LL3_00112 IPR023460 Ribosomal protein L7Ae, putative LL3_00112 IPR000948 Ribosomal protein L7Ae, prokaryotes LL3_00112 IPR029064 50S ribosomal protein L30e-like LL3_00113 IPR000235 Ribosomal protein S5/S7 LL3_00113 IPR036823 Ribosomal protein S7 domain superfamily LL3_00113 IPR023798 Ribosomal protein S7 domain LL3_00113 IPR020606 Ribosomal protein S7, conserved site LL3_00113 IPR005717 Ribosomal protein S7, bacterial/organellar-type LL3_00114 IPR005517 Translation elongation factor EFG/EF2, domain IV LL3_00114 IPR004540 Translation elongation factor EFG/EF2 LL3_00114 IPR035647 EF-G domain III/V-like LL3_00114 IPR009000 Translation protein, beta-barrel domain superfamily LL3_00114 IPR000795 Transcription factor, GTP-binding domain LL3_00114 IPR009022 Elongation factor G, domain III LL3_00114 IPR000640 Elongation factor EFG, domain V-like LL3_00114 IPR004161 Translation elongation factor EFTu-like, domain 2 LL3_00114 IPR005225 Small GTP-binding protein domain LL3_00114 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00114 IPR035649 EFG, domain V LL3_00114 IPR041095 Elongation Factor G, domain II LL3_00114 IPR031157 Tr-type G domain, conserved site LL3_00114 IPR020568 Ribosomal protein S5 domain 2-type fold LL3_00114 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup LL3_00115 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00115 IPR004161 Translation elongation factor EFTu-like, domain 2 LL3_00115 IPR033720 Elongation factor Tu, domain 2 LL3_00115 IPR000795 Transcription factor, GTP-binding domain LL3_00115 IPR009000 Translation protein, beta-barrel domain superfamily LL3_00115 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal LL3_00115 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle LL3_00115 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal LL3_00115 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain LL3_00115 IPR005225 Small GTP-binding protein domain LL3_00115 IPR031157 Tr-type G domain, conserved site LL3_00116 IPR002410 Peptidase S33 LL3_00116 IPR029058 Alpha/Beta hydrolase fold LL3_00116 IPR022742 Serine aminopeptidase, S33 LL3_00118 IPR000597 Ribosomal protein L3 LL3_00118 IPR019927 Ribosomal protein L3, bacterial/organelle-type LL3_00118 IPR009000 Translation protein, beta-barrel domain superfamily LL3_00118 IPR019926 Ribosomal protein L3, conserved site LL3_00119 IPR023574 Ribosomal protein L4 domain superfamily LL3_00119 IPR013005 50S ribosomal protein uL4 LL3_00119 IPR002136 Ribosomal protein L4/L1e LL3_00120 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily LL3_00120 IPR013025 Ribosomal protein L25/L23 LL3_00120 IPR001014 Ribosomal protein L23/L25, conserved site LL3_00120 IPR012678 Ribosomal protein L23/L15e core domain superfamily LL3_00121 IPR012340 Nucleic acid-binding, OB-fold LL3_00121 IPR022666 Ribosomal Proteins L2, RNA binding domain LL3_00121 IPR014722 Ribosomal protein L2, domain 2 LL3_00121 IPR014726 Ribosomal protein L2, domain 3 LL3_00121 IPR002171 Ribosomal protein L2 LL3_00121 IPR005880 Ribosomal protein L2, bacterial/organellar-type LL3_00121 IPR022671 Ribosomal protein L2, conserved site LL3_00121 IPR008991 Translation protein SH3-like domain superfamily LL3_00121 IPR022669 Ribosomal protein L2, C-terminal LL3_00122 IPR023575 Ribosomal protein S19, superfamily LL3_00122 IPR005732 Ribosomal protein S19, bacterial-type LL3_00122 IPR002222 Ribosomal protein S19/S15 LL3_00122 IPR020934 Ribosomal protein S19 conserved site LL3_00123 IPR018280 Ribosomal protein S3, conserved site LL3_00123 IPR001351 Ribosomal protein S3, C-terminal LL3_00123 IPR004087 K Homology domain LL3_00123 IPR005704 Ribosomal protein S3, bacterial-type LL3_00123 IPR009019 K homology domain superfamily, prokaryotic type LL3_00123 IPR036419 Ribosomal protein S3, C-terminal domain superfamily LL3_00123 IPR004044 K Homology domain, type 2 LL3_00123 IPR015946 K homology domain-like, alpha/beta LL3_00124 IPR016180 Ribosomal protein L10e/L16 LL3_00124 IPR036920 Ribosomal protein L10e/L16 superfamily LL3_00124 IPR000114 Ribosomal protein L16 LL3_00124 IPR020798 Ribosomal protein L16, conserved site LL3_00125 IPR018254 Ribosomal protein L29, conserved site LL3_00125 IPR036049 Ribosomal protein L29/L35 superfamily LL3_00125 IPR001854 Ribosomal protein L29/L35 LL3_00126 IPR019979 Ribosomal protein S17, conserved site LL3_00126 IPR000266 Ribosomal protein S17/S11 LL3_00126 IPR012340 Nucleic acid-binding, OB-fold LL3_00126 IPR019984 30S ribosomal protein S17 LL3_00127 IPR005824 KOW LL3_00127 IPR005825 Ribosomal protein L24/L26, conserved site LL3_00127 IPR008991 Translation protein SH3-like domain superfamily LL3_00127 IPR003256 Ribosomal protein L24 LL3_00127 IPR014722 Ribosomal protein L2, domain 2 LL3_00127 IPR041988 Ribosomal Protein L26/L24, KOW domain LL3_00128 IPR031309 Ribosomal protein L5, C-terminal LL3_00128 IPR031310 Ribosomal protein L5, N-terminal LL3_00128 IPR002132 Ribosomal protein L5 LL3_00128 IPR020930 Ribosomal protein L5, bacterial-type LL3_00128 IPR020929 Ribosomal protein L5, conserved site LL3_00128 IPR022803 Ribosomal protein L5 domain superfamily LL3_00129 IPR001209 Ribosomal protein S14 LL3_00129 IPR018271 Ribosomal protein S14, conserved site LL3_00129 IPR023053 Ribosomal protein S14, type Z LL3_00130 IPR000630 Ribosomal protein S8 LL3_00130 IPR035987 Ribosomal protein S8 superfamily LL3_00131 IPR002358 Ribosomal protein L6, conserved site LL3_00131 IPR019906 Ribosomal protein L6, bacterial-type LL3_00131 IPR020040 Ribosomal protein L6, alpha-beta domain LL3_00131 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily LL3_00131 IPR000702 Ribosomal protein L6 LL3_00132 IPR005484 Ribosomal protein L18 LL3_00132 IPR004389 Ribosomal protein L18, bacterial-type LL3_00133 IPR013810 Ribosomal protein S5, N-terminal LL3_00133 IPR020568 Ribosomal protein S5 domain 2-type fold LL3_00133 IPR005324 Ribosomal protein S5, C-terminal LL3_00133 IPR018192 Ribosomal protein S5, N-terminal, conserved site LL3_00133 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup LL3_00133 IPR005712 Ribosomal protein S5, bacterial-type LL3_00133 IPR000851 Ribosomal protein S5 LL3_00134 IPR005996 Ribosomal protein L30, bacterial-type LL3_00134 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily LL3_00134 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain LL3_00134 IPR018038 Ribosomal protein L30, conserved site LL3_00135 IPR021131 Ribosomal protein L18e/L15P LL3_00135 IPR001196 Ribosomal protein L15, conserved site LL3_00135 IPR005749 Ribosomal protein L15, bacterial-type LL3_00135 IPR030878 Ribosomal protein L15 LL3_00135 IPR036227 Ribosomal L18e/L15P superfamily LL3_00136 IPR026593 Protein translocase subunit SecY LL3_00136 IPR002208 SecY/SEC61-alpha family LL3_00136 IPR023201 SecY domain superfamily LL3_00136 IPR030659 SecY conserved site LL3_00137 IPR033690 Adenylate kinase, conserved site LL3_00137 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00137 IPR000850 Adenylate kinase/UMP-CMP kinase LL3_00137 IPR006259 Adenylate kinase subfamily LL3_00137 IPR007862 Adenylate kinase, active site lid domain LL3_00138 IPR036005 Creatinase/aminopeptidase-like LL3_00138 IPR000994 Peptidase M24 LL3_00138 IPR001714 Peptidase M24, methionine aminopeptidase LL3_00138 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 LL3_00139 IPR035977 Ribosomal protein L36 superfamily LL3_00139 IPR000473 Ribosomal protein L36 LL3_00140 IPR027437 30s ribosomal protein S13, C-terminal LL3_00140 IPR001892 Ribosomal protein S13 LL3_00140 IPR010979 Ribosomal protein S13-like, H2TH LL3_00140 IPR019980 Ribosomal protein S13, bacterial-type LL3_00140 IPR018269 Ribosomal protein S13, conserved site LL3_00141 IPR011773 DNA-directed RNA polymerase, alpha subunit LL3_00141 IPR011262 DNA-directed RNA polymerase, insert domain LL3_00141 IPR036643 DNA-directed RNA polymerase, insert domain superfamily LL3_00141 IPR011260 RNA polymerase, alpha subunit, C-terminal LL3_00141 IPR036603 RNA polymerase, RBP11-like subunit LL3_00141 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type LL3_00142 IPR030947 Energy-coupling factor transporter ATP-binding protein EcfA1 LL3_00142 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00142 IPR003439 ABC transporter-like LL3_00142 IPR017871 ABC transporter, conserved site LL3_00142 IPR003593 AAA+ ATPase domain LL3_00142 IPR015856 ABC transporter, CbiO/EcfA subunit LL3_00143 IPR003593 AAA+ ATPase domain LL3_00143 IPR003439 ABC transporter-like LL3_00143 IPR030946 Energy-coupling factor transporter ATP-binding protein EcfA2 LL3_00143 IPR015856 ABC transporter, CbiO/EcfA subunit LL3_00143 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00143 IPR017871 ABC transporter, conserved site LL3_00144 IPR024919 ECF transporter transmembrane protein EcfT LL3_00144 IPR003339 ABC/ECF transporter, transmembrane component LL3_00145 IPR020095 Pseudouridine synthase I, TruA, C-terminal LL3_00145 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain LL3_00145 IPR001406 Pseudouridine synthase I, TruA LL3_00145 IPR020103 Pseudouridine synthase, catalytic domain superfamily LL3_00146 IPR005822 Ribosomal protein L13 LL3_00146 IPR005823 Ribosomal protein L13, bacterial-type LL3_00146 IPR023563 Ribosomal protein L13, conserved site LL3_00146 IPR036899 Ribosomal protein L13 superfamily LL3_00148 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_00148 IPR013216 Methyltransferase type 11 LL3_00149 IPR019667 Uncharacterised protein family YbaK LL3_00150 IPR014234 N-acetylmuramoyl-L-alanine amidase CwlD LL3_00150 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain LL3_00151 IPR000808 Mrp, conserved site LL3_00151 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00151 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 LL3_00151 IPR019591 Mrp/NBP35 ATP-binding protein LL3_00152 IPR041262 Spore germination GerD, central core domain LL3_00153 IPR024164 KinB-signalling pathway activation protein LL3_00154 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel LL3_00154 IPR014132 Sporulation polysaccharide deacetylase, PdaB LL3_00154 IPR002509 NodB homology domain LL3_00156 IPR011701 Major facilitator superfamily LL3_00156 IPR036259 MFS transporter superfamily LL3_00156 IPR020846 Major facilitator superfamily domain LL3_00159 IPR004627 L-threonine 3-dehydrogenase LL3_00159 IPR013149 Alcohol dehydrogenase, C-terminal LL3_00159 IPR013154 Alcohol dehydrogenase, N-terminal LL3_00159 IPR036291 NAD(P)-binding domain superfamily LL3_00159 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site LL3_00159 IPR020843 Polyketide synthase, enoylreductase domain LL3_00159 IPR011032 GroES-like superfamily LL3_00161 IPR036513 STAS domain superfamily LL3_00161 IPR002645 STAS domain LL3_00161 IPR011547 SLC26A/SulP transporter domain LL3_00161 IPR001902 SLC26A/SulP transporter LL3_00161 IPR018045 Sulphate anion transporter, conserved site LL3_00162 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 LL3_00162 IPR004710 Bile acid:sodium symporter LL3_00162 IPR038770 Sodium/solute symporter superfamily LL3_00163 IPR000801 Putative esterase LL3_00163 IPR029058 Alpha/Beta hydrolase fold LL3_00164 IPR000522 ABC transporter, permease protein, BtuC-like LL3_00164 IPR037294 ABC transporter, BtuC-like LL3_00165 IPR037294 ABC transporter, BtuC-like LL3_00165 IPR000522 ABC transporter, permease protein, BtuC-like LL3_00166 IPR002491 ABC transporter periplasmic binding domain LL3_00167 IPR018060 DNA binding HTH domain, AraC-type LL3_00167 IPR009057 Homeobox-like domain superfamily LL3_00167 IPR020449 Transcription regulator HTH, AraC- type LL3_00167 IPR002491 ABC transporter periplasmic binding domain LL3_00167 IPR018062 HTH domain AraC-type, conserved site LL3_00168 IPR008302 Uncharacterised conserved protein UCP016719 LL3_00169 IPR019800 Glycoside hydrolase, family 3, active site LL3_00169 IPR001764 Glycoside hydrolase, family 3, N-terminal LL3_00169 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily LL3_00169 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily LL3_00169 IPR017853 Glycoside hydrolase superfamily LL3_00169 IPR002772 Glycoside hydrolase family 3 C-terminal domain LL3_00170 IPR001466 Beta-lactamase-related LL3_00170 IPR012338 Beta-lactamase/transpeptidase-like LL3_00171 IPR013013 Phosphotransferase system, EIIC component, type 1 LL3_00171 IPR001996 Phosphotransferase system, IIB component, type 1 LL3_00171 IPR036878 Glucose permease domain IIB LL3_00171 IPR003352 Phosphotransferase system, EIIC LL3_00171 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site LL3_00173 IPR040190 N-acetylmuramic acid 6-phosphate etherase/glucokinase regulatory protein LL3_00173 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ LL3_00173 IPR005486 Glucokinase regulatory protein, conserved site LL3_00173 IPR001347 Sugar isomerase (SIS) LL3_00174 IPR000182 GNAT domain LL3_00174 IPR016181 Acyl-CoA N-acyltransferase LL3_00175 IPR007553 Domain of unknown function DUF523 LL3_00176 IPR039425 RNA polymerase sigma-70 like LL3_00176 IPR013324 RNA polymerase sigma factor, region 3/4-like LL3_00176 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 LL3_00176 IPR007627 RNA polymerase sigma-70 region 2 LL3_00176 IPR014284 RNA polymerase sigma-70 like domain LL3_00176 IPR014294 RNA polymerase sigma-W, bacillaceae LL3_00176 IPR013325 RNA polymerase sigma factor, region 2 LL3_00176 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00176 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site LL3_00177 IPR027383 Putative zinc-finger LL3_00178 IPR014046 Diadenylate cyclase LL3_00178 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily LL3_00178 IPR034701 Diadenylate cyclase CdaA LL3_00178 IPR003390 DNA integrity scanning protein, DisA, N-terminal LL3_00179 IPR012505 YbbR-like LL3_00180 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III LL3_00180 IPR005843 Alpha-D-phosphohexomutase, C-terminal LL3_00180 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily LL3_00180 IPR016066 Alpha-D-phosphohexomutase, conserved site LL3_00180 IPR005841 Alpha-D-phosphohexomutase superfamily LL3_00180 IPR006352 Phosphoglucosamine mutase, bacterial type LL3_00180 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II LL3_00180 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III LL3_00180 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I LL3_00183 IPR029055 Nucleophile aminohydrolases, N-terminal LL3_00183 IPR035490 GlmS/FrlB, SIS domain 2 LL3_00183 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising LL3_00183 IPR035466 GlmS/AgaS, SIS domain 1 LL3_00183 IPR017932 Glutamine amidotransferase type 2 domain LL3_00183 IPR001347 Sugar isomerase (SIS) LL3_00188 IPR032617 Protein of unknown function DUF4885 LL3_00189 IPR020471 Aldo/keto reductase LL3_00189 IPR023210 NADP-dependent oxidoreductase domain LL3_00189 IPR018170 Aldo/keto reductase, conserved site LL3_00189 IPR036812 NADP-dependent oxidoreductase domain superfamily LL3_00190 IPR007300 CidB/LrgB family LL3_00191 IPR005538 LrgA/CidA family LL3_00192 IPR023187 Transcriptional regulator MarR-type, conserved site LL3_00192 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00192 IPR036390 Winged helix DNA-binding domain superfamily LL3_00192 IPR000835 MarR-type HTH domain LL3_00193 IPR004840 Amino acid permease, conserved site LL3_00193 IPR004841 Amino acid permease/ SLC12A domain LL3_00194 IPR036412 HAD-like superfamily LL3_00194 IPR023214 HAD superfamily LL3_00194 IPR011951 HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB LL3_00194 IPR041492 Haloacid dehalogenase-like hydrolase LL3_00194 IPR023198 Phosphoglycolate phosphatase-like, domain 2 LL3_00194 IPR006439 HAD hydrolase, subfamily IA LL3_00195 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_00195 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain LL3_00196 IPR000792 Transcription regulator LuxR, C-terminal LL3_00196 IPR001789 Signal transduction response regulator, receiver domain LL3_00196 IPR016032 Signal transduction response regulator, C-terminal effector LL3_00196 IPR011006 CheY-like superfamily LL3_00197 IPR003593 AAA+ ATPase domain LL3_00197 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00197 IPR017871 ABC transporter, conserved site LL3_00197 IPR003439 ABC transporter-like LL3_00199 IPR000412 ABC-2 transporter LL3_00201 IPR032624 Protein of unknown function DUF4879 LL3_00202 IPR020255 Minor curli fiber component A LL3_00206 IPR002293 Amino acid/polyamine transporter I LL3_00207 IPR030395 Glycerophosphodiester phosphodiesterase domain LL3_00207 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily LL3_00208 IPR036259 MFS transporter superfamily LL3_00208 IPR020846 Major facilitator superfamily domain LL3_00208 IPR021159 Glycerate/sugar phosphate transporter, conserved site LL3_00208 IPR000849 Sugar phosphate transporter LL3_00208 IPR005267 Glycerol-3-phosphate transporter LL3_00208 IPR011701 Major facilitator superfamily LL3_00210 IPR020258 Uncharacterised protein family YbeF LL3_00211 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal LL3_00211 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily LL3_00211 IPR024674 HpaB/PvcC/4-BUDH N-terminal LL3_00211 IPR024719 HpaB/PvcC/4-BUDH C-terminal LL3_00211 IPR012687 4-HPA 3-monooxygenase large component, Deinococcus-type LL3_00211 IPR004925 HpaB/PvcC/4-BUDH LL3_00215 IPR016205 Glycerol dehydrogenase LL3_00215 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA LL3_00215 IPR018211 Alcohol dehydrogenase, iron-type, conserved site LL3_00216 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase LL3_00216 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type LL3_00216 IPR013815 ATP-grasp fold, subdomain 1 LL3_00216 IPR016185 Pre-ATP-grasp domain superfamily LL3_00216 IPR011054 Rudiment single hybrid motif LL3_00216 IPR011761 ATP-grasp fold LL3_00218 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase LL3_00218 IPR000462 CDP-alcohol phosphatidyltransferase LL3_00219 IPR032816 SNARE associated Golgi protein LL3_00220 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 LL3_00220 IPR033177 Phosphatidylserine decarboxylase LL3_00220 IPR003817 Phosphatidylserine decarboxylase-related LL3_00223 IPR018107 Sodium:dicarboxylate symporter, conserved site LL3_00223 IPR036458 Sodium:dicarboxylate symporter superfamily LL3_00223 IPR001991 Sodium:dicarboxylate symporter LL3_00223 IPR033380 Glutamate-aspartate symport protein GltP/GltT LL3_00225 IPR001544 Aminotransferase class IV LL3_00225 IPR018300 Aminotransferase, class IV, conserved site LL3_00225 IPR033939 Branched-chain aminotransferase LL3_00225 IPR036038 Aminotransferase-like, PLP-dependent enzymes LL3_00225 IPR005786 Branched-chain amino acid aminotransferase II LL3_00226 IPR004841 Amino acid permease/ SLC12A domain LL3_00226 IPR004840 Amino acid permease, conserved site LL3_00227 IPR017226 Betaine-homocysteine S-methyltransferase, BHMT LL3_00227 IPR003726 Homocysteine-binding domain LL3_00227 IPR036589 Homocysteine-binding domain superfamily LL3_00228 IPR001463 Sodium:alanine symporter LL3_00229 IPR012338 Beta-lactamase/transpeptidase-like LL3_00229 IPR015868 Glutaminase LL3_00231 IPR005467 Histidine kinase domain LL3_00231 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LL3_00231 IPR003594 Histidine kinase/HSP90-like ATPase LL3_00231 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_00232 IPR001789 Signal transduction response regulator, receiver domain LL3_00232 IPR013972 YcbB domain LL3_00232 IPR011006 CheY-like superfamily LL3_00233 IPR002575 Aminoglycoside phosphotransferase LL3_00233 IPR011009 Protein kinase-like domain superfamily LL3_00234 IPR031538 Tryptophan RNA-binding attenuator protein inhibitory protein LL3_00234 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily LL3_00237 IPR036837 Cation efflux protein, cytoplasmic domain superfamily LL3_00237 IPR027470 Cation efflux protein, cytoplasmic domain LL3_00237 IPR002524 Cation efflux protein LL3_00237 IPR027469 Cation efflux transmembrane domain superfamily LL3_00238 IPR029479 Nitroreductase LL3_00238 IPR000415 Nitroreductase-like LL3_00240 IPR032808 DoxX family LL3_00241 IPR036249 Thioredoxin-like superfamily LL3_00241 IPR013766 Thioredoxin domain LL3_00244 IPR019649 Protein of unknown function DUF2512 LL3_00246 IPR011105 Cell wall hydrolase, SleB LL3_00246 IPR042047 Cell wall hydrolase SleB, domain 1 LL3_00247 IPR032093 Phospholipase D, N-terminal LL3_00247 IPR018946 Alkaline phosphatase D-related LL3_00247 IPR038607 PhoD-like superfamily LL3_00247 IPR008963 Purple acid phosphatase-like, N-terminal LL3_00248 IPR003369 Sec-independent protein translocase protein TatA/B/E LL3_00248 IPR006312 Sec-independent protein translocase protein TatA/E LL3_00249 IPR002033 Sec-independent periplasmic protein translocase TatC LL3_00249 IPR019820 Sec-independent periplasmic protein translocase, conserved site LL3_00250 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily LL3_00250 IPR029762 Pyroglutamyl peptidase I, bacterial-type LL3_00250 IPR033694 Pyroglutamyl peptidase I, Cys active site LL3_00250 IPR033693 Pyroglutamyl peptidase I, Glu active site LL3_00250 IPR000816 Peptidase C15, pyroglutamyl peptidase I LL3_00250 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like LL3_00251 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site LL3_00251 IPR000192 Aminotransferase class V domain LL3_00251 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_00251 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_00251 IPR015424 Pyridoxal phosphate-dependent transferase LL3_00252 IPR020846 Major facilitator superfamily domain LL3_00252 IPR004638 Drug resistance transporter EmrB-like LL3_00252 IPR036259 MFS transporter superfamily LL3_00252 IPR011701 Major facilitator superfamily LL3_00253 IPR001647 DNA-binding HTH domain, TetR-type LL3_00253 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily LL3_00253 IPR009057 Homeobox-like domain superfamily LL3_00255 IPR002918 Lipase EstA/Esterase EstB LL3_00255 IPR029058 Alpha/Beta hydrolase fold LL3_00256 IPR029058 Alpha/Beta hydrolase fold LL3_00256 IPR002918 Lipase EstA/Esterase EstB LL3_00257 IPR002918 Lipase EstA/Esterase EstB LL3_00257 IPR029058 Alpha/Beta hydrolase fold LL3_00258 IPR004027 SEC-C motif LL3_00258 IPR036915 Cyclin-like superfamily LL3_00258 IPR007889 DNA binding HTH domain, Psq-type LL3_00259 IPR020471 Aldo/keto reductase LL3_00259 IPR036812 NADP-dependent oxidoreductase domain superfamily LL3_00259 IPR023210 NADP-dependent oxidoreductase domain LL3_00260 IPR029051 Domain of unknown function DUF4352 LL3_00260 IPR031343 Domain of unknown function DUF5105 LL3_00260 IPR029050 Immunoprotective extracellular, immunoglobulin-like domain superfamily LL3_00261 IPR032599 Protein of unknown function DUF4901 LL3_00262 IPR032599 Protein of unknown function DUF4901 LL3_00263 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily LL3_00263 IPR039561 Peptidase M15C LL3_00264 IPR013026 Tetratricopeptide repeat-containing domain LL3_00264 IPR040702 Response regulator aspartate phosphatase, N-terminal LL3_00264 IPR019734 Tetratricopeptide repeat LL3_00264 IPR011990 Tetratricopeptide-like helical domain superfamily LL3_00265 IPR036291 NAD(P)-binding domain superfamily LL3_00265 IPR020904 Short-chain dehydrogenase/reductase, conserved site LL3_00265 IPR002347 Short-chain dehydrogenase/reductase SDR LL3_00266 IPR006047 Glycosyl hydrolase, family 13, catalytic domain LL3_00266 IPR013780 Glycosyl hydrolase, all-beta LL3_00266 IPR017853 Glycoside hydrolase superfamily LL3_00268 IPR036390 Winged helix DNA-binding domain superfamily LL3_00268 IPR005149 Transcription regulator PadR, N-terminal LL3_00268 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00268 IPR018309 Transcription regulator PadR, C-terminal LL3_00269 IPR006129 Adhesin B LL3_00269 IPR006128 Adhesion lipoprotein LL3_00269 IPR006127 Periplasmic solute binding protein, ZnuA-like LL3_00270 IPR003593 AAA+ ATPase domain LL3_00270 IPR003439 ABC transporter-like LL3_00270 IPR017871 ABC transporter, conserved site LL3_00270 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00271 IPR037294 ABC transporter, BtuC-like LL3_00271 IPR001626 ABC transporter, TroCD-like LL3_00273 IPR036661 Luciferase-like domain superfamily LL3_00273 IPR011251 Luciferase-like domain LL3_00273 IPR019949 Luciferase family oxidoreductase, group 1 LL3_00274 IPR003325 TerD domain LL3_00275 IPR003325 TerD domain LL3_00276 IPR003325 TerD domain LL3_00277 IPR022493 Integral membrane YkoY LL3_00277 IPR005496 Integral membrane protein TerC LL3_00278 IPR025647 Putative component of 'biosynthetic module' LL3_00279 IPR008863 Toxic anion resistance LL3_00280 IPR005829 Sugar transporter, conserved site LL3_00280 IPR036259 MFS transporter superfamily LL3_00280 IPR020846 Major facilitator superfamily domain LL3_00280 IPR011701 Major facilitator superfamily LL3_00281 IPR003593 AAA+ ATPase domain LL3_00281 IPR017871 ABC transporter, conserved site LL3_00281 IPR000644 CBS domain LL3_00281 IPR005892 Glycine betaine transport ATP-binding subunit LL3_00281 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00281 IPR003439 ABC transporter-like LL3_00282 IPR035906 MetI-like superfamily LL3_00282 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LL3_00283 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain LL3_00284 IPR036264 Bacterial exopeptidase dimerisation domain LL3_00284 IPR011650 Peptidase M20, dimerisation domain LL3_00284 IPR017439 Amidohydrolase LL3_00284 IPR037484 AmhX-like LL3_00284 IPR002933 Peptidase M20 LL3_00285 IPR018385 C4-dicarboxylate anaerobic carrier-like LL3_00287 IPR010432 RDD LL3_00288 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal LL3_00288 IPR001557 L-lactate/malate dehydrogenase LL3_00288 IPR022383 Lactate/malate dehydrogenase, C-terminal LL3_00288 IPR011304 L-lactate dehydrogenase LL3_00288 IPR018177 L-lactate dehydrogenase, active site LL3_00288 IPR036291 NAD(P)-binding domain superfamily LL3_00288 IPR001236 Lactate/malate dehydrogenase, N-terminal LL3_00289 IPR004638 Drug resistance transporter EmrB-like LL3_00289 IPR036259 MFS transporter superfamily LL3_00289 IPR020846 Major facilitator superfamily domain LL3_00289 IPR011701 Major facilitator superfamily LL3_00290 IPR000835 MarR-type HTH domain LL3_00290 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00290 IPR036390 Winged helix DNA-binding domain superfamily LL3_00290 IPR011991 ArsR-like helix-turn-helix domain LL3_00291 IPR001123 Amino acid exporter protein, LeuE-type LL3_00293 IPR004841 Amino acid permease/ SLC12A domain LL3_00295 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LL3_00295 IPR022926 NH(3)-dependent NAD(+) synthetase LL3_00295 IPR003694 NAD(+) synthetase LL3_00295 IPR022310 NAD/GMP synthase LL3_00296 IPR013022 Xylose isomerase-like, TIM barrel domain LL3_00296 IPR036237 Xylose isomerase-like superfamily LL3_00297 IPR011701 Major facilitator superfamily LL3_00297 IPR020846 Major facilitator superfamily domain LL3_00297 IPR036259 MFS transporter superfamily LL3_00298 IPR000623 Shikimate kinase/Threonine synthase-like 1 LL3_00298 IPR023000 Shikimate kinase, conserved site LL3_00298 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00298 IPR031322 Shikimate kinase/gluconokinase LL3_00299 IPR039069 Carbohydrate esterase 7 family LL3_00299 IPR008391 Acetyl xylan esterase LL3_00299 IPR029058 Alpha/Beta hydrolase fold LL3_00300 IPR018775 RNA repair pathway DNA polymerase beta LL3_00301 IPR008219 Proline dehydrogenase, bacteria and archaea LL3_00301 IPR029041 FAD-linked oxidoreductase-like LL3_00301 IPR015659 Proline oxidase family LL3_00301 IPR002872 Proline dehydrogenase domain LL3_00302 IPR016161 Aldehyde/histidinol dehydrogenase LL3_00302 IPR016163 Aldehyde dehydrogenase, C-terminal LL3_00302 IPR016160 Aldehyde dehydrogenase, cysteine active site LL3_00302 IPR015590 Aldehyde dehydrogenase domain LL3_00302 IPR016162 Aldehyde dehydrogenase, N-terminal LL3_00302 IPR005932 1-pyrroline-5-carboxylate dehydrogenase LL3_00302 IPR029510 Aldehyde dehydrogenase, glutamic acid active site LL3_00303 IPR001734 Sodium/solute symporter LL3_00303 IPR038377 Sodium/glucose symporter superfamily LL3_00303 IPR011851 Sodium/proline symporter LL3_00303 IPR018212 Sodium/solute symporter, conserved site LL3_00304 IPR042070 PucR C-terminal helix-turn-helix domain superfamily LL3_00304 IPR025736 PucR C-terminal helix-turn-helix domain LL3_00304 IPR041522 CdaR, GGDEF-like domain LL3_00305 IPR036188 FAD/NAD(P)-binding domain superfamily LL3_00305 IPR023753 FAD/NAD(P)-binding domain LL3_00305 IPR022890 Ferredoxin--NADP reductase, type 2 LL3_00306 IPR014777 Tetrapyrrole methylase, subdomain 1 LL3_00306 IPR000878 Tetrapyrrole methylase LL3_00306 IPR035996 Tetrapyrrole methylase superfamily LL3_00306 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily LL3_00306 IPR014776 Tetrapyrrole methylase, subdomain 2 LL3_00306 IPR006366 Uroporphyrin-III C-methyltransferase LL3_00306 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site LL3_00307 IPR017941 Rieske [2Fe-2S] iron-sulphur domain LL3_00307 IPR012748 Rieske-like [2Fe-2S] domain, NirD-type LL3_00307 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily LL3_00308 IPR007419 BFD-like [2Fe-2S]-binding domain LL3_00308 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily LL3_00308 IPR036188 FAD/NAD(P)-binding domain superfamily LL3_00308 IPR041575 NADH-rubredoxin oxidoreductase, C-terminal LL3_00308 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site LL3_00308 IPR017121 Nitrite reductase [NAD(P)H], large subunit LL3_00308 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB LL3_00308 IPR023753 FAD/NAD(P)-binding domain LL3_00308 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily LL3_00308 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain LL3_00308 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily LL3_00308 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain LL3_00309 IPR011701 Major facilitator superfamily LL3_00309 IPR004737 Nitrate transporter LL3_00309 IPR036259 MFS transporter superfamily LL3_00309 IPR020846 Major facilitator superfamily domain LL3_00310 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00310 IPR003495 CobW/HypB/UreG, nucleotide-binding domain LL3_00310 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal LL3_00311 IPR027399 Alcohol dehydrogenase GroES-associated LL3_00311 IPR013149 Alcohol dehydrogenase, C-terminal LL3_00311 IPR011032 GroES-like superfamily LL3_00311 IPR036291 NAD(P)-binding domain superfamily LL3_00311 IPR013154 Alcohol dehydrogenase, N-terminal LL3_00311 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site LL3_00312 IPR010432 RDD LL3_00313 IPR024485 Protein of unknown function DUF2680 LL3_00314 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site LL3_00314 IPR017853 Glycoside hydrolase superfamily LL3_00314 IPR001360 Glycoside hydrolase family 1 LL3_00314 IPR018120 Glycoside hydrolase family 1, active site LL3_00315 IPR038691 DNA-entry nuclease inhibitor, ComJ superfamily LL3_00315 IPR020354 Competence, DNA-entry nuclease inhibitor, ComJ LL3_00316 IPR029476 Deoxyribonuclease NucA/NucB LL3_00317 IPR001347 Sugar isomerase (SIS) LL3_00317 IPR017552 3-hexulose-6-phosphate isomerase LL3_00318 IPR011060 Ribulose-phosphate binding barrel LL3_00318 IPR001754 Orotidine 5'-phosphate decarboxylase domain LL3_00318 IPR013785 Aldolase-type TIM barrel LL3_00318 IPR041710 HPS/KGPDC domain LL3_00318 IPR017553 3-hexulose-6-phosphate synthase LL3_00319 IPR002577 Helix-turn-helix, HxlR type LL3_00319 IPR036390 Winged helix DNA-binding domain superfamily LL3_00319 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00321 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily LL3_00321 IPR042099 AMP-dependent synthetase-like superfamily LL3_00321 IPR010071 Amino acid adenylation domain LL3_00321 IPR006162 Phosphopantetheine attachment site LL3_00321 IPR009081 Phosphopantetheine binding ACP domain LL3_00321 IPR029058 Alpha/Beta hydrolase fold LL3_00321 IPR025110 AMP-binding enzyme, C-terminal domain LL3_00321 IPR020806 Polyketide synthase, phosphopantetheine-binding domain LL3_00321 IPR010060 Non-ribosomal peptide synthase LL3_00321 IPR001242 Condensation domain LL3_00321 IPR000873 AMP-dependent synthetase/ligase LL3_00321 IPR036736 ACP-like superfamily LL3_00321 IPR020845 AMP-binding, conserved site LL3_00322 IPR001242 Condensation domain LL3_00322 IPR036736 ACP-like superfamily LL3_00322 IPR042099 AMP-dependent synthetase-like superfamily LL3_00322 IPR025110 AMP-binding enzyme, C-terminal domain LL3_00322 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily LL3_00322 IPR009081 Phosphopantetheine binding ACP domain LL3_00322 IPR006162 Phosphopantetheine attachment site LL3_00322 IPR020806 Polyketide synthase, phosphopantetheine-binding domain LL3_00322 IPR000873 AMP-dependent synthetase/ligase LL3_00322 IPR010071 Amino acid adenylation domain LL3_00322 IPR010060 Non-ribosomal peptide synthase LL3_00322 IPR020845 AMP-binding, conserved site LL3_00323 IPR009081 Phosphopantetheine binding ACP domain LL3_00323 IPR020845 AMP-binding, conserved site LL3_00323 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily LL3_00323 IPR000873 AMP-dependent synthetase/ligase LL3_00323 IPR010071 Amino acid adenylation domain LL3_00323 IPR029058 Alpha/Beta hydrolase fold LL3_00323 IPR025110 AMP-binding enzyme, C-terminal domain LL3_00323 IPR036736 ACP-like superfamily LL3_00323 IPR001242 Condensation domain LL3_00323 IPR020806 Polyketide synthase, phosphopantetheine-binding domain LL3_00323 IPR001031 Thioesterase LL3_00323 IPR006162 Phosphopantetheine attachment site LL3_00324 IPR012223 Thioesterase type II, NRPS/PKS/S-FAS LL3_00324 IPR001031 Thioesterase LL3_00324 IPR029058 Alpha/Beta hydrolase fold LL3_00327 IPR004568 Phosphopantetheine-protein transferase domain LL3_00327 IPR037143 4'-phosphopantetheinyl transferase domain superfamily LL3_00327 IPR008278 4'-phosphopantetheinyl transferase domain LL3_00328 IPR038750 Uncharacterized protein YczE/YyaS-like LL3_00329 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00329 IPR017871 ABC transporter, conserved site LL3_00329 IPR003439 ABC transporter-like LL3_00329 IPR003593 AAA+ ATPase domain LL3_00329 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type LL3_00330 IPR035906 MetI-like superfamily LL3_00330 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain LL3_00330 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LL3_00331 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF LL3_00331 IPR018313 Solute-binding protein family 3, conserved site LL3_00332 IPR005119 LysR, substrate-binding LL3_00332 IPR000847 Transcription regulator HTH, LysR LL3_00332 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00332 IPR036390 Winged helix DNA-binding domain superfamily LL3_00333 IPR004507 Flavin prenyltransferase UbiX-like LL3_00333 IPR036551 Flavin prenyltransferase-like LL3_00333 IPR003382 Flavoprotein LL3_00333 IPR032901 Probable UbiX-like flavin prenyltransferase LL3_00334 IPR002830 UbiD decarboxylyase family LL3_00334 IPR032902 Phenolic acid decarboxylase subunit C LL3_00336 IPR012349 FMN-binding split barrel LL3_00337 IPR005279 Dipeptide/tripeptide permease LL3_00337 IPR000109 Proton-dependent oligopeptide transporter family LL3_00337 IPR036259 MFS transporter superfamily LL3_00337 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site LL3_00337 IPR020846 Major facilitator superfamily domain LL3_00338 IPR012334 Pectin lyase fold LL3_00338 IPR006626 Parallel beta-helix repeat LL3_00338 IPR006633 Carbohydrate-binding/sugar hydrolysis domain LL3_00338 IPR039448 Right handed beta helix domain LL3_00338 IPR011050 Pectin lyase fold/virulence factor LL3_00338 IPR024535 Pectate lyase superfamily protein LL3_00341 IPR004995 Bacillus/Clostridium Ger spore germination protein LL3_00342 IPR038501 Spore germination GerAC superfamily LL3_00342 IPR008844 Spore germination GerAC LL3_00343 IPR004761 Spore germination GerAB LL3_00346 IPR018313 Solute-binding protein family 3, conserved site LL3_00346 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF LL3_00348 IPR003593 AAA+ ATPase domain LL3_00348 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00348 IPR017871 ABC transporter, conserved site LL3_00348 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type LL3_00348 IPR003439 ABC transporter-like LL3_00350 IPR042188 MmgE/PrpD superfamily, domain 2 LL3_00350 IPR005656 MmgE/PrpD LL3_00350 IPR042183 MmgE/PrpD superfamily, domain 1 LL3_00350 IPR036148 MmgE/PrpD superfamily LL3_00351 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00351 IPR003439 ABC transporter-like LL3_00351 IPR003593 AAA+ ATPase domain LL3_00352 IPR025857 MacB-like periplasmic core domain LL3_00352 IPR003838 ABC transporter permease protein domain LL3_00354 IPR001867 OmpR/PhoB-type DNA-binding domain LL3_00354 IPR016032 Signal transduction response regulator, C-terminal effector LL3_00354 IPR001789 Signal transduction response regulator, receiver domain LL3_00354 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00354 IPR039420 Transcriptional regulatory protein WalR-like LL3_00354 IPR011006 CheY-like superfamily LL3_00355 IPR003660 HAMP domain LL3_00355 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_00355 IPR005467 Histidine kinase domain LL3_00355 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LL3_00355 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LL3_00355 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LL3_00355 IPR003594 Histidine kinase/HSP90-like ATPase LL3_00357 IPR011990 Tetratricopeptide-like helical domain superfamily LL3_00357 IPR013026 Tetratricopeptide repeat-containing domain LL3_00357 IPR040702 Response regulator aspartate phosphatase, N-terminal LL3_00357 IPR019734 Tetratricopeptide repeat LL3_00358 IPR025899 Phosphatase RapC/F inhibitor, PhrC/F LL3_00360 IPR010070 Sporulation protein YjcZ-like LL3_00361 IPR036393 Acetylglutamate kinase-like superfamily LL3_00361 IPR002912 ACT domain LL3_00361 IPR027795 CASTOR, ACT domain LL3_00361 IPR018042 Aspartate kinase, conserved site LL3_00361 IPR001341 Aspartate kinase LL3_00361 IPR005260 Aspartate kinase, monofunctional class LL3_00361 IPR001048 Aspartate/glutamate/uridylate kinase LL3_00361 IPR035804 Aspartokinase 3, N-terminal LL3_00363 IPR000522 ABC transporter, permease protein, BtuC-like LL3_00363 IPR037294 ABC transporter, BtuC-like LL3_00364 IPR037294 ABC transporter, BtuC-like LL3_00364 IPR000522 ABC transporter, permease protein, BtuC-like LL3_00365 IPR003439 ABC transporter-like LL3_00365 IPR017871 ABC transporter, conserved site LL3_00365 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00365 IPR003593 AAA+ ATPase domain LL3_00366 IPR033870 FatB domain LL3_00366 IPR002491 ABC transporter periplasmic binding domain LL3_00367 IPR036259 MFS transporter superfamily LL3_00367 IPR020846 Major facilitator superfamily domain LL3_00367 IPR011701 Major facilitator superfamily LL3_00367 IPR004638 Drug resistance transporter EmrB-like LL3_00368 IPR001647 DNA-binding HTH domain, TetR-type LL3_00368 IPR009057 Homeobox-like domain superfamily LL3_00369 IPR016446 Flavin oxidoreductase Frp family LL3_00369 IPR000415 Nitroreductase-like LL3_00369 IPR029479 Nitroreductase LL3_00370 IPR007138 Antibiotic biosynthesis monooxygenase domain LL3_00370 IPR011008 Dimeric alpha-beta barrel LL3_00371 IPR011991 ArsR-like helix-turn-helix domain LL3_00371 IPR001845 HTH ArsR-type DNA-binding domain LL3_00371 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00371 IPR036390 Winged helix DNA-binding domain superfamily LL3_00372 IPR036390 Winged helix DNA-binding domain superfamily LL3_00372 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00372 IPR000524 Transcription regulator HTH, GntR LL3_00372 IPR015424 Pyridoxal phosphate-dependent transferase LL3_00372 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_00372 IPR004839 Aminotransferase, class I/classII LL3_00373 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_00373 IPR015424 Pyridoxal phosphate-dependent transferase LL3_00373 IPR005814 Aminotransferase class-III LL3_00373 IPR004632 4-aminobutyrate aminotransferase, bacterial LL3_00373 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_00374 IPR010102 Succinate semialdehyde dehydrogenase LL3_00374 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent LL3_00374 IPR015590 Aldehyde dehydrogenase domain LL3_00374 IPR016161 Aldehyde/histidinol dehydrogenase LL3_00374 IPR016163 Aldehyde dehydrogenase, C-terminal LL3_00374 IPR016160 Aldehyde dehydrogenase, cysteine active site LL3_00374 IPR016162 Aldehyde dehydrogenase, N-terminal LL3_00375 IPR010651 Sugar transport protein LL3_00376 IPR036291 NAD(P)-binding domain superfamily LL3_00376 IPR002347 Short-chain dehydrogenase/reductase SDR LL3_00376 IPR020904 Short-chain dehydrogenase/reductase, conserved site LL3_00377 IPR038507 YcnI-like superfamily LL3_00377 IPR012533 YcnI-like LL3_00378 IPR032693 YtkA-like domain LL3_00378 IPR032694 Copper transport protein C/D LL3_00378 IPR007348 CopC domain LL3_00378 IPR008457 Copper resistance protein D LL3_00378 IPR014756 Immunoglobulin E-set LL3_00379 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00379 IPR001034 DeoR-type HTH domain LL3_00379 IPR008719 Nitrous oxide reductase accessory protein NosL LL3_00379 IPR036390 Winged helix DNA-binding domain superfamily LL3_00382 IPR036095 PTS system IIB component-like superfamily LL3_00382 IPR003352 Phosphotransferase system, EIIC LL3_00382 IPR013011 Phosphotransferase system, EIIB component, type 2 LL3_00382 IPR003501 Phosphotransferase system, EIIB component, type 2/3 LL3_00382 IPR029503 Phosphotransferase system EIIB component, mannitol-specific LL3_00382 IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC LL3_00382 IPR013014 Phosphotransferase system, EIIC component, type 2 LL3_00383 IPR002178 PTS EIIA type-2 domain LL3_00383 IPR016152 Phosphotransferase/anion transporter LL3_00384 IPR023027 Mannitol dehydrogenase, conserved site LL3_00384 IPR013131 Mannitol dehydrogenase, N-terminal LL3_00384 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily LL3_00384 IPR000669 Mannitol dehydrogenase LL3_00384 IPR023028 Mannitol-1-phosphate 5-dehydrogenase LL3_00384 IPR013328 6-phosphogluconate dehydrogenase, domain 2 LL3_00384 IPR036291 NAD(P)-binding domain superfamily LL3_00384 IPR013118 Mannitol dehydrogenase, C-terminal LL3_00385 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ LL3_00385 IPR029069 HotDog domain superfamily LL3_00387 IPR036412 HAD-like superfamily LL3_00387 IPR023214 HAD superfamily LL3_00387 IPR006379 HAD-superfamily hydrolase, subfamily IIB LL3_00388 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel LL3_00388 IPR005501 LamB/YcsF/PxpA-like LL3_00389 IPR001046 NRAMP family LL3_00390 IPR009906 D-glutamate cyclase LL3_00390 IPR038021 Putative hydro-lyase LL3_00390 IPR016938 Uncharacterised protein family UPF0317 LL3_00391 IPR010016 KipI family LL3_00391 IPR029000 Cyclophilin-like domain superfamily LL3_00391 IPR003833 Carboxyltransferase domain, subdomain C and D LL3_00392 IPR003778 Carboxyltransferase domain, subdomain A and B LL3_00392 IPR029000 Cyclophilin-like domain superfamily LL3_00393 IPR029016 GAF-like domain superfamily LL3_00393 IPR014757 Transcription regulator IclR, C-terminal LL3_00393 IPR036390 Winged helix DNA-binding domain superfamily LL3_00393 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00393 IPR005471 Transcription regulator IclR, N-terminal LL3_00394 IPR036514 SGNH hydrolase superfamily LL3_00394 IPR013830 SGNH hydrolase-type esterase domain LL3_00395 IPR025018 Protein of unknown function DUF3953 LL3_00396 IPR007138 Antibiotic biosynthesis monooxygenase domain LL3_00396 IPR011008 Dimeric alpha-beta barrel LL3_00397 IPR012338 Beta-lactamase/transpeptidase-like LL3_00397 IPR007887 NTF2-like N-terminal transpeptidase LL3_00397 IPR001460 Penicillin-binding protein, transpeptidase LL3_00397 IPR036138 Penicillin-binding protein, dimerisation domain superfamily LL3_00397 IPR005311 Penicillin-binding protein, dimerisation domain LL3_00397 IPR032710 NTF2-like domain superfamily LL3_00398 IPR023210 NADP-dependent oxidoreductase domain LL3_00398 IPR020471 Aldo/keto reductase LL3_00398 IPR036812 NADP-dependent oxidoreductase domain superfamily LL3_00400 IPR016152 Phosphotransferase/anion transporter LL3_00400 IPR002178 PTS EIIA type-2 domain LL3_00400 IPR013011 Phosphotransferase system, EIIB component, type 2 LL3_00400 IPR036634 PRD domain superfamily LL3_00400 IPR036390 Winged helix DNA-binding domain superfamily LL3_00400 IPR003501 Phosphotransferase system, EIIB component, type 2/3 LL3_00400 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00400 IPR011608 PRD domain LL3_00400 IPR007737 Mga helix-turn-helix domain LL3_00400 IPR013196 Helix-turn-helix, type 11 LL3_00400 IPR036095 PTS system IIB component-like superfamily LL3_00401 IPR042099 AMP-dependent synthetase-like superfamily LL3_00401 IPR000873 AMP-dependent synthetase/ligase LL3_00401 IPR020845 AMP-binding, conserved site LL3_00401 IPR025110 AMP-binding enzyme, C-terminal domain LL3_00403 IPR002347 Short-chain dehydrogenase/reductase SDR LL3_00403 IPR020904 Short-chain dehydrogenase/reductase, conserved site LL3_00403 IPR036291 NAD(P)-binding domain superfamily LL3_00404 IPR014710 RmlC-like jelly roll fold LL3_00404 IPR011051 RmlC-like cupin domain superfamily LL3_00405 IPR016181 Acyl-CoA N-acyltransferase LL3_00405 IPR000182 GNAT domain LL3_00406 IPR012349 FMN-binding split barrel LL3_00406 IPR038725 General stress protein, FMN-binding split barrel domain LL3_00407 IPR021260 Lipid II flippase Amj LL3_00408 IPR023845 Domain of unknown function DUF3817, transmembrane LL3_00409 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain LL3_00409 IPR000485 AsnC-type HTH domain LL3_00409 IPR036390 Winged helix DNA-binding domain superfamily LL3_00409 IPR011008 Dimeric alpha-beta barrel LL3_00409 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00409 IPR019888 Transcription regulator AsnC-type LL3_00410 IPR013497 DNA topoisomerase, type IA, central LL3_00410 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 LL3_00410 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 LL3_00410 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 LL3_00410 IPR023405 DNA topoisomerase, type IA, core domain LL3_00410 IPR023406 DNA topoisomerase, type IA, active site LL3_00410 IPR003601 DNA topoisomerase, type IA, domain 2 LL3_00410 IPR000380 DNA topoisomerase, type IA LL3_00410 IPR034144 DNA topoisomerase 3-like, TOPRIM domain LL3_00410 IPR006171 TOPRIM domain LL3_00410 IPR005738 DNA topoisomerase III LL3_00410 IPR003602 DNA topoisomerase, type IA, DNA-binding domain LL3_00412 IPR012341 Six-hairpin glycosidase-like superfamily LL3_00412 IPR008928 Six-hairpin glycosidase superfamily LL3_00413 IPR000160 GGDEF domain LL3_00413 IPR029787 Nucleotide cyclase LL3_00414 IPR018763 Protein of unknown function DUF2334 LL3_00415 IPR029044 Nucleotide-diphospho-sugar transferases LL3_00416 IPR018513 Cellulose synthase BcsB, bacterial LL3_00416 IPR008979 Galactose-binding-like domain superfamily LL3_00417 IPR002293 Amino acid/polyamine transporter I LL3_00418 IPR029061 Thiamin diphosphate-binding fold LL3_00418 IPR029035 DHS-like NAD/FAD-binding domain superfamily LL3_00418 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding LL3_00418 IPR012000 Thiamine pyrophosphate enzyme, central domain LL3_00418 IPR000399 TPP-binding enzyme, conserved site LL3_00418 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain LL3_00425 IPR011990 Tetratricopeptide-like helical domain superfamily LL3_00425 IPR013026 Tetratricopeptide repeat-containing domain LL3_00425 IPR040702 Response regulator aspartate phosphatase, N-terminal LL3_00425 IPR019734 Tetratricopeptide repeat LL3_00428 IPR019618 Spore germination protein GerPA/GerPF LL3_00430 IPR001046 NRAMP family LL3_00434 IPR018691 Protein of unknown function DUF2188 LL3_00435 IPR020348 Uncharacterised protein family YvaD LL3_00436 IPR000390 Small multidrug resistance protein family LL3_00437 IPR024787 EcsC protein LL3_00438 IPR038956 Late embryogenesis abundant protein, LEA_5 subgroup LL3_00438 IPR019626 Stress-induced protein, KGG, repeat LL3_00439 IPR014710 RmlC-like jelly roll fold LL3_00439 IPR019780 Germin, manganese binding site LL3_00439 IPR013096 Cupin 2, conserved barrel LL3_00439 IPR011051 RmlC-like cupin domain superfamily LL3_00440 IPR032555 Domain of unknown function DUF4937 LL3_00440 IPR011008 Dimeric alpha-beta barrel LL3_00441 IPR027407 Manganese catalase, C-terminal LL3_00441 IPR007760 Manganese catalase LL3_00441 IPR039377 Manganese catalase, ferritin-like di-iron-binding domain LL3_00441 IPR009078 Ferritin-like superfamily LL3_00441 IPR012347 Ferritin-like LL3_00442 IPR004682 TRAP transporter solute receptor, DctP family LL3_00442 IPR018389 TRAP transporter solute receptor DctP/TeaA LL3_00442 IPR038404 TRAP transporter solute receptor DctP superfamily LL3_00443 IPR029151 Periplasmic sensor-like domain superfamily LL3_00443 IPR000014 PAS domain LL3_00443 IPR005467 Histidine kinase domain LL3_00443 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_00443 IPR035965 PAS domain superfamily LL3_00443 IPR033463 Single cache domain 3 LL3_00443 IPR003594 Histidine kinase/HSP90-like ATPase LL3_00443 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB LL3_00443 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LL3_00443 IPR039506 SpoOB, alpha-helical domain LL3_00444 IPR013196 Helix-turn-helix, type 11 LL3_00444 IPR011006 CheY-like superfamily LL3_00444 IPR036390 Winged helix DNA-binding domain superfamily LL3_00444 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00444 IPR001789 Signal transduction response regulator, receiver domain LL3_00444 IPR024187 Signal transduction response regulator, citrate/malate metabolism LL3_00445 IPR023954 C4-dicarboxylate transport protein LL3_00445 IPR001991 Sodium:dicarboxylate symporter LL3_00445 IPR018107 Sodium:dicarboxylate symporter, conserved site LL3_00445 IPR036458 Sodium:dicarboxylate symporter superfamily LL3_00446 IPR002549 Transmembrane protein TqsA-like LL3_00447 IPR017871 ABC transporter, conserved site LL3_00447 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00447 IPR003439 ABC transporter-like LL3_00447 IPR003593 AAA+ ATPase domain LL3_00451 IPR025004 Transcriptional regulatory protein SenN/SenS LL3_00453 IPR002524 Cation efflux protein LL3_00453 IPR027470 Cation efflux protein, cytoplasmic domain LL3_00453 IPR036837 Cation efflux protein, cytoplasmic domain superfamily LL3_00453 IPR027469 Cation efflux transmembrane domain superfamily LL3_00454 IPR036249 Thioredoxin-like superfamily LL3_00454 IPR005746 Thioredoxin LL3_00454 IPR013766 Thioredoxin domain LL3_00455 IPR016185 Pre-ATP-grasp domain superfamily LL3_00455 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site LL3_00455 IPR013815 ATP-grasp fold, subdomain 1 LL3_00455 IPR011761 ATP-grasp fold LL3_00455 IPR011127 D-alanine--D-alanine ligase, N-terminal domain LL3_00455 IPR011095 D-alanine--D-alanine ligase, C-terminal LL3_00455 IPR005905 D-alanine--D-alanine ligase LL3_00456 IPR004101 Mur ligase, C-terminal LL3_00456 IPR036565 Mur-like, catalytic domain superfamily LL3_00456 IPR036615 Mur ligase, C-terminal domain superfamily LL3_00456 IPR013221 Mur ligase, central LL3_00456 IPR000713 Mur ligase, N-terminal catalytic domain LL3_00456 IPR035911 MurE/MurF, N-terminal LL3_00456 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase LL3_00458 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site LL3_00458 IPR030880 DEAD-box ATP-dependent RNA helicase CshA LL3_00458 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00458 IPR014001 Helicase superfamily 1/2, ATP-binding domain LL3_00458 IPR001650 Helicase, C-terminal LL3_00458 IPR011545 DEAD/DEAH box helicase domain LL3_00458 IPR014014 RNA helicase, DEAD-box type, Q motif LL3_00459 IPR005182 Domain of unknown function DUF304 LL3_00460 IPR014529 Uncharacterised conserved protein UCP026631 LL3_00460 IPR005182 Domain of unknown function DUF304 LL3_00461 IPR035952 Rhomboid-like superfamily LL3_00461 IPR022764 Peptidase S54, rhomboid domain LL3_00462 IPR008278 4'-phosphopantetheinyl transferase domain LL3_00462 IPR037143 4'-phosphopantetheinyl transferase domain superfamily LL3_00462 IPR002582 Holo-[acyl carrier protein] synthase LL3_00462 IPR004568 Phosphopantetheine-protein transferase domain LL3_00463 IPR029046 Lipoprotein localisation LolA/LolB/LppX LL3_00465 IPR001608 Alanine racemase, N-terminal LL3_00465 IPR000821 Alanine racemase LL3_00465 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site LL3_00465 IPR029066 PLP-binding barrel LL3_00465 IPR011079 Alanine racemase, C-terminal LL3_00465 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal LL3_00466 IPR013321 Arc-type ribbon-helix-helix LL3_00466 IPR002145 Ribbon-helix-helix protein, CopG LL3_00466 IPR010985 Ribbon-helix-helix LL3_00467 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor LL3_00467 IPR003477 mRNA interferase PemK-like LL3_00468 IPR014792 RsbS co-antagonist protein RsbRA N-terminal domain LL3_00468 IPR002645 STAS domain LL3_00468 IPR012292 Globin/Protoglobin LL3_00468 IPR036513 STAS domain superfamily LL3_00469 IPR002645 STAS domain LL3_00469 IPR036513 STAS domain superfamily LL3_00470 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_00470 IPR003594 Histidine kinase/HSP90-like ATPase LL3_00471 IPR001932 PPM-type phosphatase domain LL3_00471 IPR036457 PPM-type phosphatase domain superfamily LL3_00471 IPR014787 Phosphoserine phosphatase RsbU, N-terminal LL3_00471 IPR017944 KaiA/RbsU helical domain superfamily LL3_00472 IPR036513 STAS domain superfamily LL3_00472 IPR002645 STAS domain LL3_00472 IPR003658 Anti-sigma factor antagonist LL3_00473 IPR010193 Serine-protein kinase RsbW LL3_00473 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_00473 IPR003594 Histidine kinase/HSP90-like ATPase LL3_00474 IPR014284 RNA polymerase sigma-70 like domain LL3_00474 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00474 IPR013325 RNA polymerase sigma factor, region 2 LL3_00474 IPR007630 RNA polymerase sigma-70 region 4 LL3_00474 IPR007624 RNA polymerase sigma-70 region 3 LL3_00474 IPR007627 RNA polymerase sigma-70 region 2 LL3_00474 IPR000943 RNA polymerase sigma-70 LL3_00474 IPR014322 RNA polymerase sigma-B/F/G type LL3_00474 IPR014288 RNA polymerase sigma-B factor LL3_00474 IPR013324 RNA polymerase sigma factor, region 3/4-like LL3_00475 IPR001932 PPM-type phosphatase domain LL3_00475 IPR039248 Phosphatase RsbX LL3_00475 IPR036457 PPM-type phosphatase domain superfamily LL3_00476 IPR037027 YqgF/RNase H-like domain superfamily LL3_00476 IPR010994 RuvA domain 2-like LL3_00476 IPR006641 YqgF/RNase H-like domain LL3_00476 IPR012337 Ribonuclease H-like superfamily LL3_00476 IPR023319 Tex-like protein, HTH domain superfamily LL3_00476 IPR023323 Tex-like domain superfamily LL3_00476 IPR003029 S1 domain LL3_00476 IPR041692 HHH domain 9 LL3_00476 IPR012340 Nucleic acid-binding, OB-fold LL3_00476 IPR022967 RNA-binding domain, S1 LL3_00476 IPR032639 Tex protein, YqgF-like domain LL3_00476 IPR018974 Tex-like protein, N-terminal LL3_00478 IPR023524 Uncharacterised protein family SprT-like LL3_00478 IPR006640 SprT-like LL3_00479 IPR023508 Acetyl esterase LL3_00479 IPR033140 Lipase, GDXG, putative serine active site LL3_00479 IPR013094 Alpha/beta hydrolase fold-3 LL3_00479 IPR029058 Alpha/Beta hydrolase fold LL3_00480 IPR036102 OsmC/Ohr superfamily LL3_00480 IPR003718 OsmC/Ohr family LL3_00480 IPR019953 Organic hydroperoxide resistance protein famiy LL3_00480 IPR015946 K homology domain-like, alpha/beta LL3_00481 IPR000835 MarR-type HTH domain LL3_00481 IPR036390 Winged helix DNA-binding domain superfamily LL3_00481 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00485 IPR003680 Flavodoxin-like fold LL3_00485 IPR023048 NADH-azoreductase, FMN-dependent LL3_00485 IPR029039 Flavoprotein-like superfamily LL3_00486 IPR002059 Cold-shock protein, DNA-binding LL3_00486 IPR012156 Cold shock, CspA LL3_00486 IPR019844 Cold-shock (CSD) domain LL3_00486 IPR011129 Cold shock domain LL3_00486 IPR012340 Nucleic acid-binding, OB-fold LL3_00490 IPR018187 Asp/Glu racemase, active site 1 LL3_00490 IPR004380 Aspartate racemase LL3_00490 IPR001920 Asp/Glu racemase LL3_00490 IPR015942 Asp/Glu/hydantoin racemase LL3_00490 IPR033134 Asp/Glu racemase, active site 2 LL3_00494 IPR036390 Winged helix DNA-binding domain superfamily LL3_00494 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_00494 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00494 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_00494 IPR015424 Pyridoxal phosphate-dependent transferase LL3_00494 IPR000524 Transcription regulator HTH, GntR LL3_00494 IPR004839 Aminotransferase, class I/classII LL3_00495 IPR036259 MFS transporter superfamily LL3_00495 IPR020846 Major facilitator superfamily domain LL3_00495 IPR011701 Major facilitator superfamily LL3_00496 IPR002641 Patatin-like phospholipase domain LL3_00496 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase LL3_00498 IPR036318 FAD-binding, type PCMH-like superfamily LL3_00498 IPR006094 FAD linked oxidase, N-terminal LL3_00498 IPR016166 FAD-binding domain, PCMH-type LL3_00498 IPR012951 Berberine/berberine-like LL3_00498 IPR016167 FAD-binding, type PCMH, subdomain 1 LL3_00501 IPR027470 Cation efflux protein, cytoplasmic domain LL3_00501 IPR036837 Cation efflux protein, cytoplasmic domain superfamily LL3_00501 IPR002524 Cation efflux protein LL3_00501 IPR027469 Cation efflux transmembrane domain superfamily LL3_00503 IPR014710 RmlC-like jelly roll fold LL3_00503 IPR013096 Cupin 2, conserved barrel LL3_00503 IPR011051 RmlC-like cupin domain superfamily LL3_00504 IPR016181 Acyl-CoA N-acyltransferase LL3_00504 IPR000182 GNAT domain LL3_00504 IPR008125 Streptothricin acetyltransferase LL3_00505 IPR029442 GyrI-like small molecule binding domain LL3_00505 IPR011256 Regulatory factor, effector binding domain superfamily LL3_00505 IPR020449 Transcription regulator HTH, AraC- type LL3_00505 IPR018060 DNA binding HTH domain, AraC-type LL3_00505 IPR018062 HTH domain AraC-type, conserved site LL3_00505 IPR009057 Homeobox-like domain superfamily LL3_00505 IPR010499 Bacterial transcription activator, effector binding LL3_00507 IPR007197 Radical SAM LL3_00507 IPR040072 Methyltransferase (Class A) LL3_00507 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr LL3_00507 IPR013785 Aldolase-type TIM barrel LL3_00507 IPR022881 Ribosomal RNA large subunit methyltransferase, Cfr LL3_00510 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site LL3_00510 IPR013149 Alcohol dehydrogenase, C-terminal LL3_00510 IPR011032 GroES-like superfamily LL3_00510 IPR036291 NAD(P)-binding domain superfamily LL3_00510 IPR020843 Polyketide synthase, enoylreductase domain LL3_00510 IPR013154 Alcohol dehydrogenase, N-terminal LL3_00512 IPR009061 Putative DNA-binding domain superfamily LL3_00512 IPR000551 MerR-type HTH domain LL3_00515 IPR015424 Pyridoxal phosphate-dependent transferase LL3_00515 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_00515 IPR000524 Transcription regulator HTH, GntR LL3_00515 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00515 IPR036390 Winged helix DNA-binding domain superfamily LL3_00515 IPR004839 Aminotransferase, class I/classII LL3_00516 IPR012349 FMN-binding split barrel LL3_00516 IPR007396 Transcriptional regulator PAI 2-type LL3_00517 IPR036259 MFS transporter superfamily LL3_00517 IPR020846 Major facilitator superfamily domain LL3_00517 IPR011701 Major facilitator superfamily LL3_00518 IPR001647 DNA-binding HTH domain, TetR-type LL3_00518 IPR011075 Tetracyclin repressor-like, C-terminal domain LL3_00518 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily LL3_00518 IPR009057 Homeobox-like domain superfamily LL3_00519 IPR000620 EamA domain LL3_00520 IPR036390 Winged helix DNA-binding domain superfamily LL3_00520 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00520 IPR000524 Transcription regulator HTH, GntR LL3_00520 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_00520 IPR004839 Aminotransferase, class I/classII LL3_00520 IPR015424 Pyridoxal phosphate-dependent transferase LL3_00521 IPR012851 Spore coat protein CotF-like LL3_00523 IPR013149 Alcohol dehydrogenase, C-terminal LL3_00523 IPR013154 Alcohol dehydrogenase, N-terminal LL3_00523 IPR027399 Alcohol dehydrogenase GroES-associated LL3_00523 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site LL3_00523 IPR011032 GroES-like superfamily LL3_00523 IPR036291 NAD(P)-binding domain superfamily LL3_00524 IPR012851 Spore coat protein CotF-like LL3_00525 IPR012851 Spore coat protein CotF-like LL3_00526 IPR000731 Sterol-sensing domain LL3_00526 IPR004869 Membrane transport protein MMPL domain LL3_00527 IPR017926 Glutamine amidotransferase LL3_00527 IPR011697 Peptidase C26 LL3_00527 IPR029062 Class I glutamine amidotransferase-like LL3_00529 IPR016181 Acyl-CoA N-acyltransferase LL3_00529 IPR000182 GNAT domain LL3_00530 IPR003740 Uncharacterised membrane protein YitT LL3_00530 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal LL3_00530 IPR019264 Domain of unknown function DUF2179 LL3_00531 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA LL3_00531 IPR018211 Alcohol dehydrogenase, iron-type, conserved site LL3_00531 IPR016205 Glycerol dehydrogenase LL3_00532 IPR011701 Major facilitator superfamily LL3_00532 IPR036259 MFS transporter superfamily LL3_00532 IPR004812 Drug resistance transporter Bcr/CmlA subfamily LL3_00532 IPR020846 Major facilitator superfamily domain LL3_00533 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain LL3_00533 IPR018201 Beta-ketoacyl synthase, active site LL3_00533 IPR014031 Beta-ketoacyl synthase, C-terminal LL3_00533 IPR016039 Thiolase-like LL3_00533 IPR014030 Beta-ketoacyl synthase, N-terminal LL3_00533 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 LL3_00533 IPR000794 Beta-ketoacyl synthase LL3_00535 IPR002781 Transmembrane protein TauE-like LL3_00536 IPR016181 Acyl-CoA N-acyltransferase LL3_00536 IPR027455 Spermine/spermidine acetyltransferase, N-terminal LL3_00536 IPR000182 GNAT domain LL3_00537 IPR000551 MerR-type HTH domain LL3_00537 IPR029442 GyrI-like small molecule binding domain LL3_00537 IPR011256 Regulatory factor, effector binding domain superfamily LL3_00537 IPR009061 Putative DNA-binding domain superfamily LL3_00539 IPR015797 NUDIX hydrolase-like domain superfamily LL3_00539 IPR000086 NUDIX hydrolase domain LL3_00540 IPR000639 Epoxide hydrolase-like LL3_00540 IPR000073 Alpha/beta hydrolase fold-1 LL3_00540 IPR029058 Alpha/Beta hydrolase fold LL3_00541 IPR024084 Isopropylmalate dehydrogenase-like domain LL3_00541 IPR011829 Tartrate dehydrogenase LL3_00541 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site LL3_00542 IPR011711 GntR, C-terminal LL3_00542 IPR036390 Winged helix DNA-binding domain superfamily LL3_00542 IPR008920 Transcription regulator FadR/GntR, C-terminal LL3_00542 IPR000524 Transcription regulator HTH, GntR LL3_00542 IPR000485 AsnC-type HTH domain LL3_00542 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00544 IPR006326 UDP-glycosyltransferase, MGT LL3_00544 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase LL3_00548 IPR001466 Beta-lactamase-related LL3_00548 IPR012338 Beta-lactamase/transpeptidase-like LL3_00548 IPR021860 Peptidase S12, Pab87-related, C-terminal LL3_00551 IPR011438 Domain of unknown function DUF1541 LL3_00552 IPR020846 Major facilitator superfamily domain LL3_00552 IPR036259 MFS transporter superfamily LL3_00552 IPR011701 Major facilitator superfamily LL3_00553 IPR000524 Transcription regulator HTH, GntR LL3_00553 IPR036390 Winged helix DNA-binding domain superfamily LL3_00553 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily LL3_00553 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00553 IPR011663 UbiC transcription regulator-associated LL3_00554 IPR036390 Winged helix DNA-binding domain superfamily LL3_00554 IPR000524 Transcription regulator HTH, GntR LL3_00554 IPR008920 Transcription regulator FadR/GntR, C-terminal LL3_00554 IPR011711 GntR, C-terminal LL3_00554 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00555 IPR020846 Major facilitator superfamily domain LL3_00555 IPR004747 Cyanate transport system protein LL3_00555 IPR011701 Major facilitator superfamily LL3_00555 IPR036259 MFS transporter superfamily LL3_00556 IPR000390 Small multidrug resistance protein family LL3_00557 IPR000390 Small multidrug resistance protein family LL3_00558 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily LL3_00558 IPR041603 YvdT, C-terminal LL3_00558 IPR001647 DNA-binding HTH domain, TetR-type LL3_00558 IPR009057 Homeobox-like domain superfamily LL3_00559 IPR002293 Amino acid/polyamine transporter I LL3_00561 IPR023393 START-like domain superfamily LL3_00561 IPR013538 Activator of Hsp90 ATPase homologue 1-like LL3_00562 IPR036291 NAD(P)-binding domain superfamily LL3_00562 IPR011032 GroES-like superfamily LL3_00562 IPR020843 Polyketide synthase, enoylreductase domain LL3_00562 IPR014188 Acrylyl-CoA reductase AcuI LL3_00562 IPR013149 Alcohol dehydrogenase, C-terminal LL3_00562 IPR013154 Alcohol dehydrogenase, N-terminal LL3_00563 IPR020846 Major facilitator superfamily domain LL3_00563 IPR036259 MFS transporter superfamily LL3_00563 IPR005829 Sugar transporter, conserved site LL3_00563 IPR003663 Sugar/inositol transporter LL3_00563 IPR005828 Major facilitator, sugar transporter-like LL3_00564 IPR010918 PurM-like, C-terminal domain LL3_00564 IPR036676 PurM-like, C-terminal domain superfamily LL3_00564 IPR016188 PurM-like, N-terminal domain LL3_00564 IPR036921 PurM-like, N-terminal domain superfamily LL3_00564 IPR006283 Thiamine-monophosphate kinase LL3_00565 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00565 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE LL3_00566 IPR000905 Gcp-like domain LL3_00566 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB LL3_00567 IPR016181 Acyl-CoA N-acyltransferase LL3_00567 IPR006464 N-acetyltransferase RimI/Ard1 LL3_00567 IPR000182 GNAT domain LL3_00568 IPR000905 Gcp-like domain LL3_00568 IPR017861 Kae1/TsaD family LL3_00568 IPR017860 Peptidase M22, conserved site LL3_00568 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD LL3_00569 IPR003593 AAA+ ATPase domain LL3_00569 IPR032524 ABC transporter Uup, C-terminal LL3_00569 IPR003439 ABC transporter-like LL3_00569 IPR017871 ABC transporter, conserved site LL3_00569 IPR032781 ABC-transporter extension domain LL3_00569 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily LL3_00569 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00570 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily LL3_00570 IPR023045 Molybdenum cofactor biosynthesis C LL3_00570 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain LL3_00571 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00571 IPR036390 Winged helix DNA-binding domain superfamily LL3_00571 IPR022876 Redox-sensing transcriptional repressor Rex LL3_00571 IPR009718 Rex DNA-binding, C-terminal domain LL3_00571 IPR036291 NAD(P)-binding domain superfamily LL3_00571 IPR003781 CoA-binding LL3_00572 IPR003369 Sec-independent protein translocase protein TatA/B/E LL3_00572 IPR006312 Sec-independent protein translocase protein TatA/E LL3_00573 IPR019820 Sec-independent periplasmic protein translocase, conserved site LL3_00573 IPR002033 Sec-independent periplasmic protein translocase TatC LL3_00574 IPR025426 Protein of unknown function DUF4305 LL3_00575 IPR003675 CAAX prenyl protease 2 LL3_00576 IPR011032 GroES-like superfamily LL3_00576 IPR020818 GroES chaperonin family LL3_00576 IPR037124 GroES chaperonin superfamily LL3_00576 IPR018369 Chaperonin GroES, conserved site LL3_00577 IPR001844 Chaperonin Cpn60 LL3_00577 IPR027410 TCP-1-like chaperonin intermediate domain superfamily LL3_00577 IPR018370 Chaperonin Cpn60, conserved site LL3_00577 IPR027413 GroEL-like equatorial domain superfamily LL3_00577 IPR002423 Chaperonin Cpn60/TCP-1 family LL3_00577 IPR027409 GroEL-like apical domain superfamily LL3_00581 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LL3_00581 IPR001387 Cro/C1-type helix-turn-helix domain LL3_00586 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LL3_00586 IPR001387 Cro/C1-type helix-turn-helix domain LL3_00587 IPR020278 Uncharacterized protein YqaH-like LL3_00588 IPR023118 YqaI domain superfamily LL3_00588 IPR018474 Uncharacterised protein family YqaI LL3_00590 IPR017482 Putative phage-type endonuclease LL3_00590 IPR011604 Exonuclease, phage-type/RecB, C-terminal LL3_00590 IPR019080 YqaJ viral recombinase LL3_00590 IPR011335 Restriction endonuclease type II-like LL3_00591 IPR004590 DNA single-strand annealing protein RecT LL3_00591 IPR018330 RecT family LL3_00593 IPR034829 DnaD-like domain superfamily LL3_00593 IPR006343 DnaD domain LL3_00594 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00594 IPR002611 IstB-like ATP-binding protein LL3_00594 IPR003593 AAA+ ATPase domain LL3_00599 IPR035530 Phage-like element PBSX protein XtrA LL3_00602 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_00602 IPR001525 C-5 cytosine methyltransferase LL3_00605 IPR019096 YopX protein LL3_00611 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 LL3_00611 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00611 IPR013324 RNA polymerase sigma factor, region 3/4-like LL3_00611 IPR014284 RNA polymerase sigma-70 like domain LL3_00616 IPR018925 Phage terminase small subunit LL3_00616 IPR009057 Homeobox-like domain superfamily LL3_00617 IPR006437 Bacteriophage terminase, large subunit LL3_00617 IPR035413 Phage terminase large subunit, C-terminal LL3_00617 IPR035412 Phage terminase large subunit, N-terminal LL3_00639 IPR006480 Bacteriophage holin family LL3_00640 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily LL3_00640 IPR036366 PGBD superfamily LL3_00640 IPR002477 Peptidoglycan binding-like LL3_00640 IPR002502 N-acetylmuramoyl-L-alanine amidase domain LL3_00640 IPR036365 PGBD-like superfamily LL3_00645 IPR036366 PGBD superfamily LL3_00645 IPR036365 PGBD-like superfamily LL3_00645 IPR002477 Peptidoglycan binding-like LL3_00645 IPR015020 Protein of unknown function DUF1906 LL3_00645 IPR017853 Glycoside hydrolase superfamily LL3_00647 IPR002182 NB-ARC LL3_00647 IPR003593 AAA+ ATPase domain LL3_00647 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00647 IPR013026 Tetratricopeptide repeat-containing domain LL3_00647 IPR011990 Tetratricopeptide-like helical domain superfamily LL3_00647 IPR019734 Tetratricopeptide repeat LL3_00649 IPR013149 Alcohol dehydrogenase, C-terminal LL3_00649 IPR013154 Alcohol dehydrogenase, N-terminal LL3_00649 IPR020843 Polyketide synthase, enoylreductase domain LL3_00649 IPR036291 NAD(P)-binding domain superfamily LL3_00649 IPR011032 GroES-like superfamily LL3_00649 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site LL3_00650 IPR018043 Sodium:galactoside symporter, conserved site LL3_00650 IPR001927 Sodium:galactoside symporter LL3_00650 IPR020846 Major facilitator superfamily domain LL3_00650 IPR039672 Lactose permease-like LL3_00650 IPR036259 MFS transporter superfamily LL3_00651 IPR029056 Ribokinase-like LL3_00651 IPR011611 Carbohydrate kinase PfkB LL3_00651 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site LL3_00652 IPR025440 Protein of unknown function DUF4306 LL3_00652 IPR016508 Uncharacterised conserved protein UCP007103 LL3_00653 IPR007157 PspA/IM30 LL3_00654 IPR013137 Zinc finger, TFIIB-type LL3_00655 IPR007621 TPM domain LL3_00656 IPR033880 SPFH domain, YdjI-like LL3_00656 IPR036013 Band 7/SPFH domain superfamily LL3_00657 IPR036514 SGNH hydrolase superfamily LL3_00657 IPR002656 Acyltransferase 3 LL3_00659 IPR021729 Domain of unknown function DUF3298 LL3_00659 IPR025303 Deacetylase PdaC LL3_00659 IPR037126 PdaC/RsiV-like superfamily LL3_00660 IPR013324 RNA polymerase sigma factor, region 3/4-like LL3_00660 IPR013325 RNA polymerase sigma factor, region 2 LL3_00660 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 LL3_00660 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00660 IPR007627 RNA polymerase sigma-70 region 2 LL3_00660 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site LL3_00660 IPR039425 RNA polymerase sigma-70 like LL3_00660 IPR014284 RNA polymerase sigma-70 like domain LL3_00661 IPR013149 Alcohol dehydrogenase, C-terminal LL3_00661 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site LL3_00661 IPR013154 Alcohol dehydrogenase, N-terminal LL3_00661 IPR011032 GroES-like superfamily LL3_00661 IPR036291 NAD(P)-binding domain superfamily LL3_00661 IPR020843 Polyketide synthase, enoylreductase domain LL3_00662 IPR009009 RlpA-like protein, double-psi beta-barrel domain LL3_00663 IPR011659 WD40-like Beta Propeller LL3_00663 IPR015943 WD40/YVTN repeat-like-containing domain superfamily LL3_00665 IPR025916 Cold-inducible protein YdjO LL3_00666 IPR011706 Multicopper oxidase, type 2 LL3_00666 IPR011707 Multicopper oxidase, type 3 LL3_00666 IPR001117 Multicopper oxidase, type 1 LL3_00666 IPR008972 Cupredoxin LL3_00667 IPR004841 Amino acid permease/ SLC12A domain LL3_00667 IPR004840 Amino acid permease, conserved site LL3_00667 IPR011265 GABA permease LL3_00669 IPR027469 Cation efflux transmembrane domain superfamily LL3_00669 IPR002524 Cation efflux protein LL3_00669 IPR036837 Cation efflux protein, cytoplasmic domain superfamily LL3_00669 IPR027470 Cation efflux protein, cytoplasmic domain LL3_00670 IPR011703 ATPase, AAA-3 LL3_00670 IPR041628 ChlI/MoxR, AAA lid domain LL3_00670 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00671 IPR002881 Domain of unknown function DUF58 LL3_00672 IPR025403 Domain of unknown function DUF4129 LL3_00672 IPR038765 Papain-like cysteine peptidase superfamily LL3_00672 IPR021878 Protein-glutamine gamma-glutamyltransferase TgpA, N-terminal LL3_00672 IPR002931 Transglutaminase-like LL3_00674 IPR025777 GMP synthetase ATP pyrophosphatase domain LL3_00674 IPR017926 Glutamine amidotransferase LL3_00674 IPR001674 GMP synthase, C-terminal LL3_00674 IPR004739 GMP synthase, glutamine amidotransferase LL3_00674 IPR029062 Class I glutamine amidotransferase-like LL3_00674 IPR022310 NAD/GMP synthase LL3_00674 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LL3_00674 IPR022955 GMP synthase LL3_00675 IPR007627 RNA polymerase sigma-70 region 2 LL3_00675 IPR007630 RNA polymerase sigma-70 region 4 LL3_00675 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site LL3_00675 IPR014284 RNA polymerase sigma-70 like domain LL3_00675 IPR039425 RNA polymerase sigma-70 like LL3_00675 IPR013325 RNA polymerase sigma factor, region 2 LL3_00675 IPR013324 RNA polymerase sigma factor, region 3/4-like LL3_00675 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00677 IPR006043 Xanthine/uracil/vitamin C permease LL3_00677 IPR026033 Azaguanine-like transporters LL3_00679 IPR025072 Fur-regulated basic protein A LL3_00681 IPR019264 Domain of unknown function DUF2179 LL3_00681 IPR022930 Protein of unknown function UPF0316 LL3_00682 IPR025930 NETI protein LL3_00684 IPR035893 PurE domain superfamily LL3_00684 IPR024694 PurE, prokaryotic type LL3_00684 IPR000031 PurE domain LL3_00684 IPR033747 Class I PurE LL3_00685 IPR016185 Pre-ATP-grasp domain superfamily LL3_00685 IPR013815 ATP-grasp fold, subdomain 1 LL3_00685 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type LL3_00685 IPR040686 Phosphoribosylaminoimidazole carboxylase, C-terminal domain LL3_00685 IPR011761 ATP-grasp fold LL3_00685 IPR011054 Rudiment single hybrid motif LL3_00685 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit LL3_00686 IPR019468 Adenylosuccinate lyase C-terminal LL3_00686 IPR004769 Adenylosuccinate lyase LL3_00686 IPR008948 L-Aspartase-like LL3_00686 IPR024083 Fumarase/histidase, N-terminal LL3_00686 IPR022761 Fumarate lyase, N-terminal LL3_00686 IPR020557 Fumarate lyase, conserved site LL3_00686 IPR000362 Fumarate lyase family LL3_00687 IPR028923 SAICAR synthetase/ADE2, N-terminal LL3_00687 IPR033934 Bacterial and archaeal 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide synthase LL3_00687 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase LL3_00687 IPR018236 SAICAR synthetase, conserved site LL3_00688 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS LL3_00688 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily LL3_00689 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ LL3_00689 IPR029062 Class I glutamine amidotransferase-like LL3_00689 IPR017926 Glutamine amidotransferase LL3_00690 IPR041609 Phosphoribosylformylglycinamidine synthase, linker domain LL3_00690 IPR010918 PurM-like, C-terminal domain LL3_00690 IPR036921 PurM-like, N-terminal domain superfamily LL3_00690 IPR036676 PurM-like, C-terminal domain superfamily LL3_00690 IPR010074 Phosphoribosylformylglycinamidine subunit PurL LL3_00690 IPR016188 PurM-like, N-terminal domain LL3_00691 IPR017932 Glutamine amidotransferase type 2 domain LL3_00691 IPR000836 Phosphoribosyltransferase domain LL3_00691 IPR029055 Nucleophile aminohydrolases, N-terminal LL3_00691 IPR029057 Phosphoribosyltransferase-like LL3_00691 IPR005854 Amidophosphoribosyltransferase LL3_00691 IPR035584 Amidophosphoribosyltransferase, N-terminal LL3_00692 IPR016188 PurM-like, N-terminal domain LL3_00692 IPR036676 PurM-like, C-terminal domain superfamily LL3_00692 IPR010918 PurM-like, C-terminal domain LL3_00692 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase LL3_00692 IPR036921 PurM-like, N-terminal domain superfamily LL3_00693 IPR001555 Phosphoribosylglycinamide formyltransferase, active site LL3_00693 IPR036477 Formyl transferase, N-terminal domain superfamily LL3_00693 IPR004607 Phosphoribosylglycinamide formyltransferase LL3_00693 IPR002376 Formyl transferase, N-terminal LL3_00694 IPR002695 Bifunctional purine biosynthesis protein PurH-like LL3_00694 IPR024051 AICAR transformylase, duplicated domain superfamily LL3_00694 IPR016193 Cytidine deaminase-like LL3_00694 IPR036914 Methylglyoxal synthase-like domain superfamily LL3_00694 IPR011607 Methylglyoxal synthase-like domain LL3_00695 IPR020559 Phosphoribosylglycinamide synthetase, conserved site LL3_00695 IPR011054 Rudiment single hybrid motif LL3_00695 IPR011761 ATP-grasp fold LL3_00695 IPR000115 Phosphoribosylglycinamide synthetase LL3_00695 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily LL3_00695 IPR013815 ATP-grasp fold, subdomain 1 LL3_00695 IPR016185 Pre-ATP-grasp domain superfamily LL3_00695 IPR020560 Phosphoribosylglycinamide synthetase, C-domain LL3_00695 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal LL3_00695 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LL3_00696 IPR019885 Transcription regulator HTH, AsnC-type, conserved site LL3_00696 IPR036390 Winged helix DNA-binding domain superfamily LL3_00696 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain LL3_00696 IPR019888 Transcription regulator AsnC-type LL3_00696 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00696 IPR000485 AsnC-type HTH domain LL3_00696 IPR011991 ArsR-like helix-turn-helix domain LL3_00696 IPR011008 Dimeric alpha-beta barrel LL3_00697 IPR002293 Amino acid/polyamine transporter I LL3_00698 IPR021309 Protein of unknown function DUF2892 LL3_00699 IPR006679 Adenine deaminase LL3_00699 IPR026912 Adenine deaminase C-terminal domain LL3_00699 IPR006680 Amidohydrolase-related LL3_00699 IPR011059 Metal-dependent hydrolase, composite domain superfamily LL3_00699 IPR032466 Metal-dependent hydrolase LL3_00700 IPR035328 Protein of unknown function DUF3048, C-terminal domain LL3_00700 IPR021416 Protein of unknown function DUF3048, N-terminal LL3_00700 IPR023158 YerB-like superfamily LL3_00701 IPR000831 Trp repressor LL3_00701 IPR010921 Trp repressor/replication initiator LL3_00701 IPR013368 TrpR homologue YerC/YecD LL3_00701 IPR038116 TrpR-like superfamily LL3_00702 IPR002932 Glutamate synthase domain LL3_00702 IPR013785 Aldolase-type TIM barrel LL3_00702 IPR024188 Glutamate synthase large subunit-like protein LL3_00702 IPR027283 Glutamate synthase large subunit-like protein, bacteria LL3_00704 IPR038597 GGGP/HepGP synthase superfamily LL3_00704 IPR039074 GGGP/HepGP synthase group I LL3_00704 IPR008205 Geranylgeranylglyceryl phosphate synthase/Heptaprenylglyceryl phosphate synthase LL3_00705 IPR014017 UvrD-like DNA helicase, C-terminal LL3_00705 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00705 IPR014016 UvrD-like helicase, ATP-binding domain LL3_00705 IPR034739 UvrD/AddA helicase, N-terminal LL3_00705 IPR013986 DExx box DNA helicase domain superfamily LL3_00705 IPR000212 DNA helicase, UvrD/REP type LL3_00705 IPR005751 ATP-dependent DNA helicase PcrA LL3_00706 IPR002078 RNA polymerase sigma factor 54 interaction domain LL3_00706 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type LL3_00706 IPR010994 RuvA domain 2-like LL3_00706 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 LL3_00706 IPR036420 BRCT domain superfamily LL3_00706 IPR013840 NAD-dependent DNA ligase, N-terminal LL3_00706 IPR012340 Nucleic acid-binding, OB-fold LL3_00706 IPR041663 DisA/LigA, helix-hairpin-helix motif LL3_00706 IPR018239 NAD-dependent DNA ligase, active site LL3_00706 IPR033136 NAD-dependent DNA ligase, conserved site LL3_00706 IPR001679 NAD-dependent DNA ligase LL3_00706 IPR013839 NAD-dependent DNA ligase, adenylation LL3_00706 IPR004150 NAD-dependent DNA ligase, OB-fold LL3_00706 IPR001357 BRCT domain LL3_00707 IPR011426 CamS sex pheromone cAM373 LL3_00708 IPR011009 Protein kinase-like domain superfamily LL3_00708 IPR002575 Aminoglycoside phosphotransferase LL3_00709 IPR003416 MgtC/SapB/SrpB/YhiD family LL3_00710 IPR038377 Sodium/glucose symporter superfamily LL3_00710 IPR011851 Sodium/proline symporter LL3_00710 IPR001734 Sodium/solute symporter LL3_00710 IPR018212 Sodium/solute symporter, conserved site LL3_00711 IPR003837 Glu-tRNAGln amidotransferase C subunit LL3_00711 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C LL3_00712 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit LL3_00712 IPR036928 Amidase signature (AS) superfamily LL3_00712 IPR000120 Amidase LL3_00712 IPR020556 Amidase, conserved site LL3_00712 IPR023631 Amidase signature domain LL3_00713 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like LL3_00713 IPR018027 Asn/Gln amidotransferase LL3_00713 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit LL3_00713 IPR017959 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E LL3_00713 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic LL3_00713 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 2 LL3_00713 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site LL3_00713 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain LL3_00713 IPR042114 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 1 LL3_00714 IPR023772 DNA-binding HTH domain, TetR-type, conserved site LL3_00714 IPR009057 Homeobox-like domain superfamily LL3_00714 IPR001647 DNA-binding HTH domain, TetR-type LL3_00715 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains LL3_00715 IPR001036 Acriflavin resistance protein LL3_00716 IPR001206 Diacylglycerol kinase, catalytic domain LL3_00716 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal LL3_00716 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily LL3_00716 IPR005218 Diacylglycerol/lipid kinase LL3_00717 IPR030391 RNA methyltransferase TrmA, conserved site LL3_00717 IPR010280 (Uracil-5)-methyltransferase family LL3_00717 IPR002792 TRAM domain LL3_00717 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_00717 IPR012340 Nucleic acid-binding, OB-fold LL3_00717 IPR030390 RNA methyltransferase TrmA, active site LL3_00719 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00719 IPR017871 ABC transporter, conserved site LL3_00719 IPR003593 AAA+ ATPase domain LL3_00719 IPR003439 ABC transporter-like LL3_00721 IPR006728 Protein of unknown function DUF600 LL3_00721 IPR036170 Probable antitoxin YezG superfamily LL3_00722 IPR036170 Probable antitoxin YezG superfamily LL3_00722 IPR006728 Protein of unknown function DUF600 LL3_00723 IPR006728 Protein of unknown function DUF600 LL3_00723 IPR036170 Probable antitoxin YezG superfamily LL3_00724 IPR006829 LXG domain LL3_00725 IPR026834 LHH LL3_00725 IPR006829 LXG domain LL3_00726 IPR017856 Integrase-like, N-terminal LL3_00726 IPR029072 YebC-like LL3_00726 IPR026564 Transcriptional regulator TACO1-like, domain 3 LL3_00726 IPR026562 Probable transcriptional regulatory protein YeeN LL3_00726 IPR002876 Transcriptional regulator TACO1-like LL3_00728 IPR007530 Aminoglycoside 6-adenylyltransferase LL3_00729 IPR020256 Spore coat protein CotJA LL3_00730 IPR024207 Spore coat assembly protein CotJB, domain LL3_00730 IPR016571 Spore coat assembly protein CotJB LL3_00731 IPR012347 Ferritin-like LL3_00731 IPR039377 Manganese catalase, ferritin-like di-iron-binding domain LL3_00731 IPR007760 Manganese catalase LL3_00731 IPR009078 Ferritin-like superfamily LL3_00732 IPR016181 Acyl-CoA N-acyltransferase LL3_00732 IPR000182 GNAT domain LL3_00734 IPR023090 UPF0702, alpha/beta domain superfamily LL3_00734 IPR007353 Protein of unknown function DUF421 LL3_00735 IPR007138 Antibiotic biosynthesis monooxygenase domain LL3_00735 IPR011008 Dimeric alpha-beta barrel LL3_00736 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase LL3_00736 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain LL3_00736 IPR037523 Vicinal oxygen chelate (VOC) domain LL3_00739 IPR018743 Protein of unknown function DUF2292 LL3_00740 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic LL3_00740 IPR023468 Riboflavin kinase LL3_00740 IPR023465 Riboflavin kinase domain superfamily LL3_00741 IPR006214 Bax inhibitor 1-related LL3_00742 IPR000835 MarR-type HTH domain LL3_00742 IPR023187 Transcriptional regulator MarR-type, conserved site LL3_00742 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00742 IPR036390 Winged helix DNA-binding domain superfamily LL3_00743 IPR002938 FAD-binding domain LL3_00743 IPR036188 FAD/NAD(P)-binding domain superfamily LL3_00745 IPR017972 Cytochrome P450, conserved site LL3_00745 IPR001128 Cytochrome P450 LL3_00745 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding LL3_00745 IPR023206 Bifunctional cytochrome P450/NADPH--cytochrome P450 reductase LL3_00745 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase LL3_00745 IPR001433 Oxidoreductase FAD/NAD(P)-binding LL3_00745 IPR029039 Flavoprotein-like superfamily LL3_00745 IPR036396 Cytochrome P450 superfamily LL3_00745 IPR017927 FAD-binding domain, ferredoxin reductase-type LL3_00745 IPR001094 Flavodoxin-like LL3_00745 IPR008254 Flavodoxin/nitric oxide synthase LL3_00745 IPR017938 Riboflavin synthase-like beta-barrel LL3_00745 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily LL3_00745 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain LL3_00747 IPR012160 Lipoteichoic acid synthase-like LL3_00747 IPR000917 Sulfatase, N-terminal LL3_00747 IPR017850 Alkaline-phosphatase-like, core domain superfamily LL3_00749 IPR029044 Nucleotide-diphospho-sugar transferases LL3_00749 IPR005835 Nucleotidyl transferase domain LL3_00749 IPR013446 Glucose-1-phosphate cytidylyltransferase LL3_00750 IPR036291 NAD(P)-binding domain superfamily LL3_00750 IPR016040 NAD(P)-binding domain LL3_00751 IPR029044 Nucleotide-diphospho-sugar transferases LL3_00751 IPR005069 Nucleotide-diphospho-sugar transferase LL3_00752 IPR029044 Nucleotide-diphospho-sugar transferases LL3_00752 IPR001173 Glycosyltransferase 2-like LL3_00753 IPR029044 Nucleotide-diphospho-sugar transferases LL3_00753 IPR005069 Nucleotide-diphospho-sugar transferase LL3_00754 IPR020846 Major facilitator superfamily domain LL3_00754 IPR036259 MFS transporter superfamily LL3_00754 IPR011701 Major facilitator superfamily LL3_00755 IPR002293 Amino acid/polyamine transporter I LL3_00756 IPR016161 Aldehyde/histidinol dehydrogenase LL3_00756 IPR016163 Aldehyde dehydrogenase, C-terminal LL3_00756 IPR029510 Aldehyde dehydrogenase, glutamic acid active site LL3_00756 IPR016162 Aldehyde dehydrogenase, N-terminal LL3_00756 IPR015590 Aldehyde dehydrogenase domain LL3_00757 IPR029151 Periplasmic sensor-like domain superfamily LL3_00757 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain LL3_00758 IPR036291 NAD(P)-binding domain superfamily LL3_00758 IPR020904 Short-chain dehydrogenase/reductase, conserved site LL3_00758 IPR002347 Short-chain dehydrogenase/reductase SDR LL3_00759 IPR019734 Tetratricopeptide repeat LL3_00759 IPR011990 Tetratricopeptide-like helical domain superfamily LL3_00759 IPR001173 Glycosyltransferase 2-like LL3_00759 IPR029044 Nucleotide-diphospho-sugar transferases LL3_00759 IPR013026 Tetratricopeptide repeat-containing domain LL3_00760 IPR003593 AAA+ ATPase domain LL3_00760 IPR032781 ABC-transporter extension domain LL3_00760 IPR003439 ABC transporter-like LL3_00760 IPR017871 ABC transporter, conserved site LL3_00760 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00760 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily LL3_00760 IPR032524 ABC transporter Uup, C-terminal LL3_00762 IPR009061 Putative DNA-binding domain superfamily LL3_00762 IPR037392 YfmP, Helix-Turn-Helix DNA binding domain LL3_00762 IPR000551 MerR-type HTH domain LL3_00763 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG LL3_00763 IPR036259 MFS transporter superfamily LL3_00763 IPR020846 Major facilitator superfamily domain LL3_00763 IPR011701 Major facilitator superfamily LL3_00764 IPR003439 ABC transporter-like LL3_00764 IPR017871 ABC transporter, conserved site LL3_00764 IPR032781 ABC-transporter extension domain LL3_00764 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00764 IPR003593 AAA+ ATPase domain LL3_00765 IPR001650 Helicase, C-terminal LL3_00765 IPR014001 Helicase superfamily 1/2, ATP-binding domain LL3_00765 IPR011545 DEAD/DEAH box helicase domain LL3_00765 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00766 IPR041694 Oxidoreductase, N-terminal domain LL3_00766 IPR013149 Alcohol dehydrogenase, C-terminal LL3_00766 IPR036291 NAD(P)-binding domain superfamily LL3_00766 IPR011032 GroES-like superfamily LL3_00766 IPR020843 Polyketide synthase, enoylreductase domain LL3_00767 IPR021579 Protein of unknown function DUF3212 LL3_00767 IPR038074 YfmB domain superfamily LL3_00768 IPR025889 General stress protein 17M-like domain LL3_00769 IPR011050 Pectin lyase fold/virulence factor LL3_00769 IPR012334 Pectin lyase fold LL3_00769 IPR002022 Pectate lyase LL3_00770 IPR001898 Solute carrier family 13 LL3_00770 IPR030676 Citrate carrier CitT-related LL3_00776 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_00776 IPR011006 CheY-like superfamily LL3_00776 IPR010559 Signal transduction histidine kinase, internal region LL3_00776 IPR001789 Signal transduction response regulator, receiver domain LL3_00776 IPR003594 Histidine kinase/HSP90-like ATPase LL3_00777 IPR011006 CheY-like superfamily LL3_00777 IPR007492 LytTR DNA-binding domain LL3_00777 IPR001789 Signal transduction response regulator, receiver domain LL3_00779 IPR005754 Sortase family LL3_00779 IPR042007 Sortase A LL3_00779 IPR023365 Sortase domain superfamily LL3_00781 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LL3_00781 IPR039506 SpoOB, alpha-helical domain LL3_00781 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB LL3_00781 IPR003594 Histidine kinase/HSP90-like ATPase LL3_00781 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_00781 IPR005467 Histidine kinase domain LL3_00781 IPR035965 PAS domain superfamily LL3_00781 IPR029151 Periplasmic sensor-like domain superfamily LL3_00782 IPR001789 Signal transduction response regulator, receiver domain LL3_00782 IPR013196 Helix-turn-helix, type 11 LL3_00782 IPR024187 Signal transduction response regulator, citrate/malate metabolism LL3_00782 IPR028141 Transcriptional regulator LL3_00782 IPR011006 CheY-like superfamily LL3_00783 IPR005064 Bordetella uptake gene LL3_00783 IPR042100 Bordetella uptake gene, domain 1 LL3_00784 IPR004680 Citrate transporter-like domain LL3_00784 IPR014738 Citrate transporter LL3_00785 IPR001279 Metallo-beta-lactamase LL3_00785 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like LL3_00786 IPR036119 Nitric oxide synthase, N-terminal domain superfamily LL3_00786 IPR004030 Nitric oxide synthase, N-terminal LL3_00786 IPR017142 Nitric oxide synthase, oxygenase subunit LL3_00787 IPR036046 Acylphosphatase-like domain superfamily LL3_00787 IPR001792 Acylphosphatase-like domain LL3_00787 IPR020456 Acylphosphatase LL3_00787 IPR017968 Acylphosphatase, conserved site LL3_00788 IPR005163 3-alpha domain LL3_00788 IPR005302 Molybdenum cofactor sulfurase, C-terminal LL3_00788 IPR011037 Pyruvate kinase-like, insert domain superfamily LL3_00789 IPR022580 Protein of unknown function DUF2639 LL3_00791 IPR021637 Protein of unknown function DUF3243 LL3_00791 IPR038292 YmfJ/YflH superfamily LL3_00792 IPR000994 Peptidase M24 LL3_00792 IPR001714 Peptidase M24, methionine aminopeptidase LL3_00792 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 LL3_00792 IPR036005 Creatinase/aminopeptidase-like LL3_00793 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component LL3_00793 IPR001996 Phosphotransferase system, IIB component, type 1 LL3_00793 IPR013013 Phosphotransferase system, EIIC component, type 1 LL3_00793 IPR003352 Phosphotransferase system, EIIC LL3_00793 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site LL3_00793 IPR036878 Glucose permease domain IIB LL3_00794 IPR019723 Uncharacterised protein, YfmQ LL3_00795 IPR017850 Alkaline-phosphatase-like, core domain superfamily LL3_00795 IPR012160 Lipoteichoic acid synthase-like LL3_00795 IPR000917 Sulfatase, N-terminal LL3_00796 IPR018961 DnaJ homologue, subfamily C, member 28, conserved domain LL3_00797 IPR008978 HSP20-like chaperone LL3_00797 IPR002068 Alpha crystallin/Hsp20 domain LL3_00798 IPR019618 Spore germination protein GerPA/GerPF LL3_00799 IPR019618 Spore germination protein GerPA/GerPF LL3_00800 IPR011296 Phosphotransferase system, trehalose-specific IIBC component LL3_00800 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site LL3_00800 IPR013013 Phosphotransferase system, EIIC component, type 1 LL3_00800 IPR001996 Phosphotransferase system, IIB component, type 1 LL3_00800 IPR036878 Glucose permease domain IIB LL3_00800 IPR003352 Phosphotransferase system, EIIC LL3_00800 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component LL3_00801 IPR006047 Glycosyl hydrolase, family 13, catalytic domain LL3_00801 IPR017853 Glycoside hydrolase superfamily LL3_00801 IPR012769 Trehalose-6-phosphate hydrolase LL3_00801 IPR032091 Maltogenic Amylase, C-terminal LL3_00801 IPR013780 Glycosyl hydrolase, all-beta LL3_00802 IPR036390 Winged helix DNA-binding domain superfamily LL3_00802 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00802 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily LL3_00802 IPR012770 Trehalose operon transcriptional repressor LL3_00802 IPR000524 Transcription regulator HTH, GntR LL3_00802 IPR011663 UbiC transcription regulator-associated LL3_00803 IPR029479 Nitroreductase LL3_00803 IPR000415 Nitroreductase-like LL3_00803 IPR033878 Nitroreductase NfsB-like LL3_00806 IPR041827 CpdB, N-terminal metallophosphatase domain LL3_00806 IPR029052 Metallo-dependent phosphatase-like LL3_00806 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type LL3_00806 IPR006179 5'-Nucleotidase/apyrase LL3_00806 IPR019931 LPXTG cell wall anchor domain LL3_00806 IPR006146 5'-Nucleotidase, conserved site LL3_00806 IPR036907 5'-Nucleotidase, C-terminal domain superfamily LL3_00806 IPR008334 5'-Nucleotidase, C-terminal LL3_00807 IPR006286 Deglycase PfpI LL3_00807 IPR029062 Class I glutamine amidotransferase-like LL3_00807 IPR002818 DJ-1/PfpI LL3_00808 IPR023588 Transcription regulator HTH, PurR LL3_00808 IPR000843 LacI-type HTH domain LL3_00808 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LL3_00808 IPR028082 Periplasmic binding protein-like I LL3_00809 IPR041121 SDH, C-terminal LL3_00809 IPR022893 Shikimate dehydrogenase family LL3_00809 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal LL3_00809 IPR011342 Shikimate dehydrogenase LL3_00809 IPR036291 NAD(P)-binding domain superfamily LL3_00810 IPR013785 Aldolase-type TIM barrel LL3_00810 IPR018508 3-dehydroquinate dehydratase, active site LL3_00810 IPR001381 3-dehydroquinate dehydratase type I LL3_00811 IPR011701 Major facilitator superfamily LL3_00811 IPR020846 Major facilitator superfamily domain LL3_00811 IPR036259 MFS transporter superfamily LL3_00811 IPR005829 Sugar transporter, conserved site LL3_00812 IPR009507 Protein of unknown function UPF0435 LL3_00813 IPR017867 Protein-tyrosine phosphatase, low molecular weight LL3_00813 IPR036196 Phosphotyrosine protein phosphatase I superfamily LL3_00813 IPR023485 Phosphotyrosine protein phosphatase I LL3_00815 IPR017039 Virulence factor BrkB LL3_00816 IPR036259 MFS transporter superfamily LL3_00816 IPR020846 Major facilitator superfamily domain LL3_00816 IPR011701 Major facilitator superfamily LL3_00817 IPR004713 Calcium/proton exchanger LL3_00817 IPR004798 Calcium/proton exchanger CAX LL3_00817 IPR004837 Sodium/calcium exchanger membrane region LL3_00818 IPR025548 YfkD-like protein LL3_00819 IPR023408 Mechanosensitive ion channel MscS domain superfamily LL3_00819 IPR010920 LSM domain superfamily LL3_00819 IPR006685 Mechanosensitive ion channel MscS LL3_00819 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 LL3_00820 IPR007197 Radical SAM LL3_00820 IPR014866 YfkB-like domain LL3_00820 IPR031004 Radical SAM/CxCxxxxC motif protein YfkAB LL3_00820 IPR013785 Aldolase-type TIM barrel LL3_00822 IPR002509 NodB homology domain LL3_00822 IPR014235 Peptidoglycan-N-acetylmuramic acid deacetylase PdaA LL3_00822 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel LL3_00823 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain LL3_00823 IPR013328 6-phosphogluconate dehydrogenase, domain 2 LL3_00823 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding LL3_00823 IPR015815 3-hydroxyisobutyrate dehydrogenase-related LL3_00823 IPR036291 NAD(P)-binding domain superfamily LL3_00823 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily LL3_00825 IPR004488 Magnesium/cobalt transport protein CorA LL3_00825 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB LL3_00826 IPR003265 HhH-GPD domain LL3_00826 IPR011257 DNA glycosylase LL3_00827 IPR002792 TRAM domain LL3_00827 IPR010280 (Uracil-5)-methyltransferase family LL3_00827 IPR030391 RNA methyltransferase TrmA, conserved site LL3_00827 IPR030390 RNA methyltransferase TrmA, active site LL3_00827 IPR012340 Nucleic acid-binding, OB-fold LL3_00827 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_00828 IPR023827 Peptidase S8, subtilisin, Asp-active site LL3_00828 IPR008357 Lantibiotic leader peptide-processing serine protease LL3_00828 IPR015500 Peptidase S8, subtilisin-related LL3_00828 IPR022398 Peptidase S8, subtilisin, His-active site LL3_00828 IPR019931 LPXTG cell wall anchor domain LL3_00828 IPR036852 Peptidase S8/S53 domain superfamily LL3_00828 IPR000209 Peptidase S8/S53 domain LL3_00829 IPR003439 ABC transporter-like LL3_00829 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00829 IPR039421 Type I protein exporter LL3_00829 IPR011527 ABC transporter type 1, transmembrane domain LL3_00829 IPR003593 AAA+ ATPase domain LL3_00829 IPR036640 ABC transporter type 1, transmembrane domain superfamily LL3_00829 IPR017871 ABC transporter, conserved site LL3_00830 IPR011009 Protein kinase-like domain superfamily LL3_00830 IPR007822 Lanthionine synthetase C-like LL3_00830 IPR000719 Protein kinase domain LL3_00834 IPR018517 tRNA-dihydrouridine synthase, conserved site LL3_00834 IPR013785 Aldolase-type TIM barrel LL3_00834 IPR035587 DUS-like, FMN-binding domain LL3_00834 IPR001269 tRNA-dihydrouridine synthase LL3_00837 IPR029061 Thiamin diphosphate-binding fold LL3_00837 IPR001017 Dehydrogenase, E1 component LL3_00838 IPR005475 Transketolase-like, pyrimidine-binding domain LL3_00838 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II LL3_00838 IPR029061 Thiamin diphosphate-binding fold LL3_00838 IPR033248 Transketolase, C-terminal domain LL3_00839 IPR000089 Biotin/lipoyl attachment LL3_00839 IPR011053 Single hybrid motif LL3_00839 IPR004167 Peripheral subunit-binding domain LL3_00839 IPR036625 E3-binding domain superfamily LL3_00839 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain LL3_00839 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily LL3_00840 IPR023753 FAD/NAD(P)-binding domain LL3_00840 IPR036188 FAD/NAD(P)-binding domain superfamily LL3_00840 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I LL3_00840 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site LL3_00840 IPR006258 Dihydrolipoamide dehydrogenase LL3_00840 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily LL3_00840 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LL3_00841 IPR003018 GAF domain LL3_00841 IPR025944 Sigma-54 interaction domain, conserved site LL3_00841 IPR002197 DNA binding HTH domain, Fis-type LL3_00841 IPR002078 RNA polymerase sigma factor 54 interaction domain LL3_00841 IPR003593 AAA+ ATPase domain LL3_00841 IPR029016 GAF-like domain superfamily LL3_00841 IPR009057 Homeobox-like domain superfamily LL3_00841 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00842 IPR012610 Small acid-soluble spore protein, SspH LL3_00843 IPR022616 Glycosyl hydrolase, family 4, C-terminal LL3_00843 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal LL3_00843 IPR036291 NAD(P)-binding domain superfamily LL3_00843 IPR001088 Glycoside hydrolase, family 4 LL3_00843 IPR019802 Glycoside hydrolase, family 4, conserved site LL3_00844 IPR000281 Helix-turn-helix protein RpiR LL3_00844 IPR035472 RpiR-like, SIS domain LL3_00844 IPR009057 Homeobox-like domain superfamily LL3_00844 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00844 IPR001347 Sugar isomerase (SIS) LL3_00845 IPR013013 Phosphotransferase system, EIIC component, type 1 LL3_00845 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site LL3_00845 IPR001996 Phosphotransferase system, IIB component, type 1 LL3_00845 IPR010975 Phosphotransferase system, alpha-glucoside-specific IIBC component LL3_00845 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component LL3_00845 IPR003352 Phosphotransferase system, EIIC LL3_00845 IPR036878 Glucose permease domain IIB LL3_00846 IPR011050 Pectin lyase fold/virulence factor LL3_00846 IPR024535 Pectate lyase superfamily protein LL3_00846 IPR006626 Parallel beta-helix repeat LL3_00846 IPR021865 Peptidase G2, IMC autoproteolytic cleavage domain LL3_00846 IPR012334 Pectin lyase fold LL3_00847 IPR003439 ABC transporter-like LL3_00847 IPR036640 ABC transporter type 1, transmembrane domain superfamily LL3_00847 IPR039421 Type I protein exporter LL3_00847 IPR011527 ABC transporter type 1, transmembrane domain LL3_00847 IPR003593 AAA+ ATPase domain LL3_00847 IPR017871 ABC transporter, conserved site LL3_00847 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00848 IPR011527 ABC transporter type 1, transmembrane domain LL3_00848 IPR003593 AAA+ ATPase domain LL3_00848 IPR036640 ABC transporter type 1, transmembrane domain superfamily LL3_00848 IPR003439 ABC transporter-like LL3_00848 IPR017871 ABC transporter, conserved site LL3_00848 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00848 IPR039421 Type I protein exporter LL3_00849 IPR032808 DoxX family LL3_00850 IPR000486 Extradiol ring-cleavage dioxygenase, class I /II LL3_00850 IPR037523 Vicinal oxygen chelate (VOC) domain LL3_00850 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain LL3_00850 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase LL3_00852 IPR006369 Protohaem IX farnesyltransferase LL3_00852 IPR000537 UbiA prenyltransferase family LL3_00852 IPR030470 UbiA prenyltransferase conserved site LL3_00853 IPR000537 UbiA prenyltransferase family LL3_00853 IPR006369 Protohaem IX farnesyltransferase LL3_00853 IPR030470 UbiA prenyltransferase conserved site LL3_00854 IPR036390 Winged helix DNA-binding domain superfamily LL3_00854 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00854 IPR005149 Transcription regulator PadR, N-terminal LL3_00854 IPR018309 Transcription regulator PadR, C-terminal LL3_00855 IPR029039 Flavoprotein-like superfamily LL3_00855 IPR003680 Flavodoxin-like fold LL3_00856 IPR002656 Acyltransferase 3 LL3_00858 IPR000468 Barstar (barnase inhibitor) LL3_00858 IPR035905 Barstar-like superfamily LL3_00859 IPR024775 DinB-like domain LL3_00859 IPR034660 DinB/YfiT-like putative metalloenzymes LL3_00859 IPR023774 Putative metal-dependent hydrolase YfiT LL3_00860 IPR011701 Major facilitator superfamily LL3_00860 IPR020846 Major facilitator superfamily domain LL3_00860 IPR036259 MFS transporter superfamily LL3_00861 IPR036390 Winged helix DNA-binding domain superfamily LL3_00861 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00861 IPR000835 MarR-type HTH domain LL3_00861 IPR011991 ArsR-like helix-turn-helix domain LL3_00862 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD LL3_00862 IPR024320 Phosphatidylglycerol lysyltransferase, C-terminal LL3_00862 IPR016181 Acyl-CoA N-acyltransferase LL3_00863 IPR003719 Phenazine biosynthesis PhzF protein LL3_00864 IPR026021 Putative NAD(P)H nitroreductase YdjA-like LL3_00864 IPR029479 Nitroreductase LL3_00864 IPR000415 Nitroreductase-like LL3_00865 IPR025435 YfhD-like protein LL3_00866 IPR025437 YfhE-like protein LL3_00867 IPR010099 Epimerase family protein SDR39U1 LL3_00867 IPR036291 NAD(P)-binding domain superfamily LL3_00867 IPR001509 NAD-dependent epimerase/dehydratase LL3_00867 IPR013549 Domain of unknown function DUF1731 LL3_00868 IPR003783 Regulatory protein RecX LL3_00868 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00869 IPR036289 Hypothetical protein YfhH LL3_00869 IPR014938 Protein of unknown function DUF1811 LL3_00872 IPR019730 Protein of unknown function DUF2606 LL3_00872 IPR013783 Immunoglobulin-like fold LL3_00873 IPR009003 Peptidase S1, PA clan LL3_00873 IPR000126 Serine proteases, V8 family, serine active site LL3_00873 IPR001254 Serine proteases, trypsin domain LL3_00873 IPR018114 Serine proteases, trypsin family, histidine active site LL3_00873 IPR008256 Peptidase S1B LL3_00873 IPR028301 Serine proteases, V8 family, histidine active site LL3_00874 IPR012611 Small acid-soluble spore protein, SspK LL3_00875 IPR026952 WVELL protein LL3_00876 IPR003646 SH3-like domain, bacterial-type LL3_00878 IPR025962 SdpI/YhfL protein family LL3_00879 IPR029058 Alpha/Beta hydrolase fold LL3_00879 IPR000073 Alpha/beta hydrolase fold-1 LL3_00879 IPR000639 Epoxide hydrolase-like LL3_00881 IPR001173 Glycosyltransferase 2-like LL3_00881 IPR029044 Nucleotide-diphospho-sugar transferases LL3_00882 IPR018580 Uncharacterised protein family YfhO LL3_00883 IPR007404 LexA-binding, inner membrane-associated putative hydrolase LL3_00886 IPR011010 DNA breaking-rejoining enzyme, catalytic core LL3_00886 IPR013762 Integrase-like, catalytic domain superfamily LL3_00886 IPR002104 Integrase, catalytic domain LL3_00886 IPR004107 Integrase, SAM-like, N-terminal LL3_00886 IPR010998 Integrase/recombinase, N-terminal LL3_00894 IPR005039 Antirepressor protein, C-terminal LL3_00894 IPR014054 Bacteriophage regulatory protein, Rha family LL3_00899 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00899 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal LL3_00899 IPR007693 DNA helicase, DnaB-like, N-terminal LL3_00899 IPR007694 DNA helicase, DnaB-like, C-terminal LL3_00899 IPR007692 DNA helicase, DnaB type LL3_00899 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily LL3_00899 IPR003593 AAA+ ATPase domain LL3_00903 IPR003593 AAA+ ATPase domain LL3_00903 IPR041027 FtsK alpha domain LL3_00903 IPR002543 FtsK domain LL3_00903 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00903 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00903 IPR036390 Winged helix DNA-binding domain superfamily LL3_00903 IPR018541 FtsK gamma domain LL3_00910 IPR001907 ATP-dependent Clp protease proteolytic subunit LL3_00910 IPR029045 ClpP/crotonase-like domain superfamily LL3_00910 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA LL3_00910 IPR033135 ClpP, histidine active site LL3_00927 IPR024405 Prophage protein BhlA/UviB LL3_00928 IPR006479 Holin LL3_00929 IPR002502 N-acetylmuramoyl-L-alanine amidase domain LL3_00929 IPR036365 PGBD-like superfamily LL3_00929 IPR036366 PGBD superfamily LL3_00929 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily LL3_00929 IPR002477 Peptidoglycan binding-like LL3_00933 IPR015797 NUDIX hydrolase-like domain superfamily LL3_00933 IPR029119 MutY, C-terminal LL3_00933 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal LL3_00933 IPR003265 HhH-GPD domain LL3_00933 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif LL3_00933 IPR011257 DNA glycosylase LL3_00933 IPR005760 A/G-specific adenine glycosylase MutY LL3_00935 IPR036291 NAD(P)-binding domain superfamily LL3_00935 IPR002347 Short-chain dehydrogenase/reductase SDR LL3_00936 IPR006341 Acid-soluble spore protein, gamma-type LL3_00937 IPR025572 YgaB-like protein LL3_00939 IPR007295 Domain of unknown function DUF402 LL3_00939 IPR035930 FomD-like superfamily LL3_00939 IPR016882 Uncharacterised protein family UPF0374 LL3_00940 IPR011527 ABC transporter type 1, transmembrane domain LL3_00940 IPR003593 AAA+ ATPase domain LL3_00940 IPR003439 ABC transporter-like LL3_00940 IPR017871 ABC transporter, conserved site LL3_00940 IPR039421 Type I protein exporter LL3_00940 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00940 IPR036640 ABC transporter type 1, transmembrane domain superfamily LL3_00941 IPR010343 Aromatic acid exporter family member 1 LL3_00942 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_00942 IPR015424 Pyridoxal phosphate-dependent transferase LL3_00942 IPR005814 Aminotransferase class-III LL3_00942 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase LL3_00942 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_00943 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant LL3_00943 IPR013766 Thioredoxin domain LL3_00943 IPR024706 Peroxiredoxin, AhpC-type LL3_00943 IPR036249 Thioredoxin-like superfamily LL3_00944 IPR036390 Winged helix DNA-binding domain superfamily LL3_00944 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00944 IPR002481 Ferric-uptake regulator LL3_00945 IPR020912 Uncharacterised protein family UPF0295 LL3_00946 IPR029348 Nucleotidyltransferase-like domain LL3_00946 IPR041143 YgxA-like, helix-turn-helix domain LL3_00948 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal LL3_00949 IPR005320 Peptidase S51 LL3_00949 IPR029062 Class I glutamine amidotransferase-like LL3_00950 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B LL3_00950 IPR025747 ThiC-associated domain LL3_00950 IPR038521 ThiC/Bza superfamily LL3_00950 IPR037509 Phosphomethylpyrimidine synthase LL3_00952 IPR036318 FAD-binding, type PCMH-like superfamily LL3_00952 IPR016167 FAD-binding, type PCMH, subdomain 1 LL3_00952 IPR016166 FAD-binding domain, PCMH-type LL3_00952 IPR006094 FAD linked oxidase, N-terminal LL3_00952 IPR012951 Berberine/berberine-like LL3_00953 IPR025004 Transcriptional regulatory protein SenN/SenS LL3_00954 IPR023765 Solute-binding protein family 5, conserved site LL3_00954 IPR039424 Solute-binding protein family 5 LL3_00954 IPR000914 Solute-binding protein family 5 domain LL3_00954 IPR030678 Peptide/nickel binding protein, MppA-type LL3_00955 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LL3_00955 IPR035906 MetI-like superfamily LL3_00956 IPR025966 Oligopeptide transport permease C-like, N-terminal domain LL3_00956 IPR035906 MetI-like superfamily LL3_00956 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LL3_00957 IPR003439 ABC transporter-like LL3_00957 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal LL3_00957 IPR003593 AAA+ ATPase domain LL3_00957 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00957 IPR017871 ABC transporter, conserved site LL3_00958 IPR017871 ABC transporter, conserved site LL3_00958 IPR003593 AAA+ ATPase domain LL3_00958 IPR003439 ABC transporter-like LL3_00958 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00958 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal LL3_00959 IPR024708 Catalase active site LL3_00959 IPR037060 Catalase core domain superfamily LL3_00959 IPR020835 Catalase superfamily LL3_00959 IPR010582 Catalase immune-responsive domain LL3_00959 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 LL3_00959 IPR011614 Catalase core domain LL3_00959 IPR018028 Catalase, mono-functional, haem-containing LL3_00959 IPR002226 Catalase haem-binding site LL3_00959 IPR040333 Catalase, clade 3 LL3_00962 IPR003593 AAA+ ATPase domain LL3_00962 IPR017875 Aliphatic sulfonates import ATP-binding protein SsuB LL3_00962 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00962 IPR017871 ABC transporter, conserved site LL3_00962 IPR003439 ABC transporter-like LL3_00963 IPR015168 SsuA/THI5-like LL3_00963 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF LL3_00963 IPR010067 Aliphatic sulfonates-binding protein LL3_00964 IPR035906 MetI-like superfamily LL3_00964 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LL3_00965 IPR036661 Luciferase-like domain superfamily LL3_00965 IPR011251 Luciferase-like domain LL3_00965 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent LL3_00967 IPR001209 Ribosomal protein S14 LL3_00967 IPR023036 Ribosomal protein S14, bacterial/plastid LL3_00967 IPR018271 Ribosomal protein S14, conserved site LL3_00969 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LL3_00969 IPR001387 Cro/C1-type helix-turn-helix domain LL3_00971 IPR004155 PBS lyase HEAT-like repeat LL3_00971 IPR016024 Armadillo-type fold LL3_00971 IPR011989 Armadillo-like helical LL3_00971 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain LL3_00971 IPR004453 Epoxyqueuosine reductase QueG LL3_00971 IPR013542 Domain of unknown function DUF1730 LL3_00971 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site LL3_00972 IPR024301 Putative amidase domain LL3_00973 IPR029028 Alpha/beta knot methyltransferases LL3_00973 IPR001537 tRNA/rRNA methyltransferase, SpoU type LL3_00973 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase LL3_00973 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal LL3_00974 IPR025063 Protein of unknown function DUF4004 LL3_00975 IPR007607 Bactofilin A/B LL3_00978 IPR010650 PrkA C-terminal domain LL3_00978 IPR016230 Serine-protein kinase, PrkA LL3_00978 IPR013153 PrkA AAA domain LL3_00978 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00980 IPR006698 Uncharacterised protein family UPF0229 LL3_00980 IPR014230 Sporulation protein YhbH LL3_00981 IPR036390 Winged helix DNA-binding domain superfamily LL3_00981 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00981 IPR000835 MarR-type HTH domain LL3_00982 IPR011053 Single hybrid motif LL3_00983 IPR036259 MFS transporter superfamily LL3_00983 IPR020846 Major facilitator superfamily domain LL3_00983 IPR011701 Major facilitator superfamily LL3_00983 IPR004638 Drug resistance transporter EmrB-like LL3_00984 IPR008254 Flavodoxin/nitric oxide synthase LL3_00984 IPR005025 NADPH-dependent FMN reductase-like LL3_00984 IPR029039 Flavoprotein-like superfamily LL3_00987 IPR000524 Transcription regulator HTH, GntR LL3_00987 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_00987 IPR036390 Winged helix DNA-binding domain superfamily LL3_00988 IPR003593 AAA+ ATPase domain LL3_00988 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00988 IPR003439 ABC transporter-like LL3_00989 IPR003439 ABC transporter-like LL3_00989 IPR003593 AAA+ ATPase domain LL3_00989 IPR017871 ABC transporter, conserved site LL3_00989 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_00990 IPR032688 ABC-2 family transporter protein LL3_00991 IPR019844 Cold-shock (CSD) domain LL3_00991 IPR002059 Cold-shock protein, DNA-binding LL3_00991 IPR012340 Nucleic acid-binding, OB-fold LL3_00991 IPR012156 Cold shock, CspA LL3_00991 IPR011129 Cold shock domain LL3_00992 IPR004872 Lipoprotein NlpA family LL3_00993 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region LL3_00993 IPR029787 Nucleotide cyclase LL3_00993 IPR000160 GGDEF domain LL3_00994 IPR036458 Sodium:dicarboxylate symporter superfamily LL3_00994 IPR001991 Sodium:dicarboxylate symporter LL3_00995 IPR010158 Amidase, carbamoylase-type LL3_00995 IPR036264 Bacterial exopeptidase dimerisation domain LL3_00995 IPR002933 Peptidase M20 LL3_00997 IPR014247 Sporulation lipoprotein YhcN/YlaJ LL3_00997 IPR019076 Sporulation lipoprotein YhcN/YlaJ-like LL3_00999 IPR012851 Spore coat protein CotF-like LL3_01000 IPR036907 5'-Nucleotidase, C-terminal domain superfamily LL3_01000 IPR041831 Endonuclease YhcR, metallophosphatase domain LL3_01000 IPR012340 Nucleic acid-binding, OB-fold LL3_01000 IPR008334 5'-Nucleotidase, C-terminal LL3_01000 IPR029052 Metallo-dependent phosphatase-like LL3_01000 IPR006146 5'-Nucleotidase, conserved site LL3_01000 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold LL3_01000 IPR035437 SNase-like, OB-fold superfamily LL3_01000 IPR019948 Gram-positive LPXTG cell wall anchor LL3_01000 IPR006179 5'-Nucleotidase/apyrase LL3_01000 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type LL3_01000 IPR019931 LPXTG cell wall anchor domain LL3_01001 IPR005754 Sortase family LL3_01001 IPR023365 Sortase domain superfamily LL3_01001 IPR041999 Sortase D, type 1 LL3_01002 IPR006225 Pseudouridine synthase, RluC/RluD LL3_01002 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site LL3_01002 IPR020103 Pseudouridine synthase, catalytic domain superfamily LL3_01002 IPR006145 Pseudouridine synthase, RsuA/RluA LL3_01002 IPR002942 RNA-binding S4 domain LL3_01002 IPR036986 RNA-binding S4 domain superfamily LL3_01003 IPR020355 Uncharacterised protein family YhcU LL3_01004 IPR000644 CBS domain LL3_01005 IPR023214 HAD superfamily LL3_01005 IPR041492 Haloacid dehalogenase-like hydrolase LL3_01005 IPR023198 Phosphoglycolate phosphatase-like, domain 2 LL3_01005 IPR006439 HAD hydrolase, subfamily IA LL3_01005 IPR036412 HAD-like superfamily LL3_01006 IPR000182 GNAT domain LL3_01006 IPR036526 Carbon-nitrogen hydrolase superfamily LL3_01006 IPR016181 Acyl-CoA N-acyltransferase LL3_01006 IPR001110 Uncharacterised protein family UPF0012, conserved site LL3_01006 IPR003010 Carbon-nitrogen hydrolase LL3_01007 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_01007 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_01007 IPR015424 Pyridoxal phosphate-dependent transferase LL3_01007 IPR005814 Aminotransferase class-III LL3_01008 IPR006699 Glycerol uptake operon antiterminator LL3_01008 IPR035928 GlpP-like superfamily LL3_01009 IPR023271 Aquaporin-like LL3_01009 IPR022357 Major intrinsic protein, conserved site LL3_01009 IPR000425 Major intrinsic protein LL3_01010 IPR005999 Glycerol kinase LL3_01010 IPR000577 Carbohydrate kinase, FGGY LL3_01010 IPR018485 Carbohydrate kinase, FGGY, C-terminal LL3_01010 IPR018484 Carbohydrate kinase, FGGY, N-terminal LL3_01010 IPR018483 Carbohydrate kinase, FGGY, conserved site LL3_01011 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase LL3_01011 IPR006076 FAD dependent oxidoreductase LL3_01011 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily LL3_01011 IPR031656 Alpha-glycerophosphate oxidase, C-terminal LL3_01011 IPR036188 FAD/NAD(P)-binding domain superfamily LL3_01012 IPR005841 Alpha-D-phosphohexomutase superfamily LL3_01012 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III LL3_01012 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I LL3_01012 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III LL3_01012 IPR005843 Alpha-D-phosphohexomutase, C-terminal LL3_01012 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily LL3_01012 IPR016066 Alpha-D-phosphohexomutase, conserved site LL3_01012 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II LL3_01013 IPR003594 Histidine kinase/HSP90-like ATPase LL3_01013 IPR003018 GAF domain LL3_01013 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain LL3_01013 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_01013 IPR029016 GAF-like domain superfamily LL3_01014 IPR011006 CheY-like superfamily LL3_01014 IPR016032 Signal transduction response regulator, C-terminal effector LL3_01014 IPR001789 Signal transduction response regulator, receiver domain LL3_01014 IPR000792 Transcription regulator LuxR, C-terminal LL3_01015 IPR029039 Flavoprotein-like superfamily LL3_01015 IPR005025 NADPH-dependent FMN reductase-like LL3_01016 IPR025431 YhdB-like protein LL3_01017 IPR024987 Protein of unknown function DUF3889 LL3_01018 IPR018392 LysM domain LL3_01018 IPR036779 LysM domain superfamily LL3_01018 IPR038765 Papain-like cysteine peptidase superfamily LL3_01018 IPR000064 Endopeptidase, NLPC/P60 domain LL3_01019 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_01019 IPR000944 Transcription regulator Rrf2-type LL3_01019 IPR036390 Winged helix DNA-binding domain superfamily LL3_01019 IPR030489 Transcription regulator Rrf2-type, conserved site LL3_01020 IPR008910 Conserved TM helix LL3_01021 IPR007390 Sporulation stage V, protein R LL3_01022 IPR017850 Alkaline-phosphatase-like, core domain superfamily LL3_01022 IPR018299 Alkaline phosphatase, active site LL3_01022 IPR001952 Alkaline phosphatase LL3_01024 IPR036779 LysM domain superfamily LL3_01024 IPR038765 Papain-like cysteine peptidase superfamily LL3_01024 IPR000064 Endopeptidase, NLPC/P60 domain LL3_01024 IPR018392 LysM domain LL3_01025 IPR036390 Winged helix DNA-binding domain superfamily LL3_01025 IPR005119 LysR, substrate-binding LL3_01025 IPR000847 Transcription regulator HTH, LysR LL3_01025 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_01026 IPR036969 Citrate synthase superfamily LL3_01026 IPR016142 Citrate synthase-like, large alpha subdomain LL3_01026 IPR016143 Citrate synthase-like, small alpha subdomain LL3_01026 IPR002020 Citrate synthase LL3_01026 IPR019810 Citrate synthase active site LL3_01026 IPR024176 Citrate synthase, bacterial-type LL3_01027 IPR036291 NAD(P)-binding domain superfamily LL3_01027 IPR020904 Short-chain dehydrogenase/reductase, conserved site LL3_01027 IPR002347 Short-chain dehydrogenase/reductase SDR LL3_01028 IPR002293 Amino acid/polyamine transporter I LL3_01028 IPR004758 Amino acid transporter LL3_01029 IPR037272 Sodium:neurotransmitter symporter superfamily LL3_01029 IPR000175 Sodium:neurotransmitter symporter LL3_01030 IPR020496 Sigma-M inhibitor YhdK LL3_01031 IPR029101 Sigma factor regulator, N-terminal LL3_01031 IPR025672 Sigma factor regulator C-terminal domain LL3_01032 IPR013325 RNA polymerase sigma factor, region 2 LL3_01032 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_01032 IPR014296 RNA polymerase sigma-M, bacillaceae LL3_01032 IPR014284 RNA polymerase sigma-70 like domain LL3_01032 IPR013324 RNA polymerase sigma factor, region 3/4-like LL3_01032 IPR039425 RNA polymerase sigma-70 like LL3_01032 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 LL3_01032 IPR007627 RNA polymerase sigma-70 region 2 LL3_01032 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site LL3_01033 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase LL3_01033 IPR002123 Phospholipid/glycerol acyltransferase LL3_01034 IPR036318 FAD-binding, type PCMH-like superfamily LL3_01034 IPR002550 CNNM, transmembrane domain LL3_01034 IPR016169 FAD-binding, type PCMH, subdomain 2 LL3_01034 IPR005170 Transporter-associated domain LL3_01034 IPR000644 CBS domain LL3_01035 IPR000551 MerR-type HTH domain LL3_01035 IPR009061 Putative DNA-binding domain superfamily LL3_01036 IPR004839 Aminotransferase, class I/classII LL3_01036 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site LL3_01036 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_01036 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_01036 IPR015424 Pyridoxal phosphate-dependent transferase LL3_01037 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain LL3_01037 IPR014030 Beta-ketoacyl synthase, N-terminal LL3_01037 IPR014031 Beta-ketoacyl synthase, C-terminal LL3_01037 IPR000794 Beta-ketoacyl synthase LL3_01037 IPR016039 Thiolase-like LL3_01039 IPR000644 CBS domain LL3_01039 IPR036318 FAD-binding, type PCMH-like superfamily LL3_01039 IPR016169 FAD-binding, type PCMH, subdomain 2 LL3_01039 IPR005170 Transporter-associated domain LL3_01039 IPR002550 CNNM, transmembrane domain LL3_01040 IPR003691 Putative fluoride ion transporter CrcB LL3_01041 IPR003691 Putative fluoride ion transporter CrcB LL3_01042 IPR030395 Glycerophosphodiester phosphodiesterase domain LL3_01042 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily LL3_01044 IPR010920 LSM domain superfamily LL3_01044 IPR006686 Mechanosensitive ion channel MscS, conserved site LL3_01044 IPR006685 Mechanosensitive ion channel MscS LL3_01044 IPR011066 Mechanosensitive ion channel MscS, C-terminal LL3_01044 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 LL3_01044 IPR023408 Mechanosensitive ion channel MscS domain superfamily LL3_01045 IPR003000 Sirtuin family LL3_01045 IPR028628 Sirtuin, class U LL3_01045 IPR026590 Sirtuin family, catalytic core domain LL3_01045 IPR029035 DHS-like NAD/FAD-binding domain superfamily LL3_01045 IPR026591 Sirtuin, catalytic core small domain superfamily LL3_01046 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel LL3_01046 IPR002509 NodB homology domain LL3_01047 IPR001544 Aminotransferase class IV LL3_01047 IPR005784 D-amino acid aminotransferase LL3_01047 IPR036038 Aminotransferase-like, PLP-dependent enzymes LL3_01047 IPR018300 Aminotransferase, class IV, conserved site LL3_01048 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily LL3_01048 IPR023772 DNA-binding HTH domain, TetR-type, conserved site LL3_01048 IPR009057 Homeobox-like domain superfamily LL3_01048 IPR001647 DNA-binding HTH domain, TetR-type LL3_01048 IPR039538 BetI-type transcriptional repressor, C-terminal LL3_01051 IPR006015 Universal stress protein A family LL3_01051 IPR006016 UspA LL3_01051 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LL3_01054 IPR017871 ABC transporter, conserved site LL3_01054 IPR003593 AAA+ ATPase domain LL3_01054 IPR011527 ABC transporter type 1, transmembrane domain LL3_01054 IPR036640 ABC transporter type 1, transmembrane domain superfamily LL3_01054 IPR003439 ABC transporter-like LL3_01054 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01054 IPR039421 Type I protein exporter LL3_01055 IPR011527 ABC transporter type 1, transmembrane domain LL3_01055 IPR039421 Type I protein exporter LL3_01055 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01055 IPR017871 ABC transporter, conserved site LL3_01055 IPR003439 ABC transporter-like LL3_01055 IPR036640 ABC transporter type 1, transmembrane domain superfamily LL3_01055 IPR003593 AAA+ ATPase domain LL3_01056 IPR016040 NAD(P)-binding domain LL3_01056 IPR036291 NAD(P)-binding domain superfamily LL3_01058 IPR001448 Small acid-soluble spore protein, alpha/beta-type LL3_01058 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site LL3_01058 IPR038300 SASP, alpha/beta-type superfamily LL3_01060 IPR017263 Uncharacterised conserved protein UCP037692 LL3_01061 IPR026838 Endospore coat-associated protein YheC/D LL3_01062 IPR013815 ATP-grasp fold, subdomain 1 LL3_01062 IPR026838 Endospore coat-associated protein YheC/D LL3_01064 IPR007383 Protein of unknown function DUF445 LL3_01064 IPR016991 Protein of unknown function UCP032178 LL3_01065 IPR010368 Control of competence regulator ComK, YlbF/YmcA LL3_01065 IPR023378 YheA/YmcA-like domain superfamily LL3_01067 IPR023214 HAD superfamily LL3_01067 IPR006379 HAD-superfamily hydrolase, subfamily IIB LL3_01067 IPR036412 HAD-like superfamily LL3_01067 IPR000150 Cof family LL3_01068 IPR034505 Anaerobic coproporphyrinogen-III oxidase LL3_01068 IPR023404 Radical SAM, alpha/beta horseshoe LL3_01068 IPR007197 Radical SAM LL3_01068 IPR023995 Oxygen-independent coproporphyrinogen-III oxidase-like protein HemZ LL3_01068 IPR006638 Elp3/MiaB/NifB LL3_01069 IPR036188 FAD/NAD(P)-binding domain superfamily LL3_01069 IPR031043 Putative histamine N-monooxygenase LL3_01069 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase LL3_01070 IPR006153 Cation/H+ exchanger LL3_01070 IPR038770 Sodium/solute symporter superfamily LL3_01071 IPR026278 Potassium/proton antiporter subunit KhtT LL3_01071 IPR006037 Regulator of K+ conductance, C-terminal LL3_01071 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily LL3_01073 IPR001753 Enoyl-CoA hydratase/isomerase LL3_01073 IPR029045 ClpP/crotonase-like domain superfamily LL3_01073 IPR014748 Enoyl-CoA hydratase, C-terminal LL3_01074 IPR025544 YhzD-like protein LL3_01075 IPR017871 ABC transporter, conserved site LL3_01075 IPR003439 ABC transporter-like LL3_01075 IPR003593 AAA+ ATPase domain LL3_01075 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01075 IPR025302 Domain of unknown function DUF4162 LL3_01077 IPR041796 Mre11 nuclease, N-terminal metallophosphatase domain LL3_01077 IPR014576 Predicted phosphoesterase, YhaO type LL3_01077 IPR029052 Metallo-dependent phosphatase-like LL3_01077 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type LL3_01078 IPR038734 Uncharacterized protein YhaN, AAA domain LL3_01078 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01079 IPR006674 HD domain LL3_01079 IPR003607 HD/PDEase domain LL3_01079 IPR020873 3'-5' exoribonuclease YhaM LL3_01080 IPR025428 Sporulation protein YhaL LL3_01081 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site LL3_01081 IPR023059 Foldase protein PrsA LL3_01081 IPR027304 Trigger factor/SurA domain superfamily LL3_01081 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type LL3_01084 IPR021683 Putative zincin peptidase LL3_01086 IPR015058 Protein of unknown function DUF1878 LL3_01086 IPR035945 YhaI-like superfamily LL3_01087 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_01087 IPR023187 Transcriptional regulator MarR-type, conserved site LL3_01087 IPR023488 HTH-type transcriptional regulator Hpr LL3_01087 IPR000835 MarR-type HTH domain LL3_01087 IPR036390 Winged helix DNA-binding domain superfamily LL3_01089 IPR024623 Uncharacterised protein family YtxH LL3_01089 IPR036191 RRF superfamily LL3_01091 IPR031360 Tryptophan transporter TrpP LL3_01092 IPR000192 Aminotransferase class V domain LL3_01092 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_01092 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site LL3_01092 IPR022278 Phosphoserine aminotransferase LL3_01092 IPR015424 Pyridoxal phosphate-dependent transferase LL3_01092 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_01093 IPR039384 HINT family LL3_01093 IPR019808 Histidine triad, conserved site LL3_01093 IPR036265 HIT-like superfamily LL3_01093 IPR001310 Histidine triad (HIT) protein LL3_01093 IPR011146 HIT-like domain LL3_01094 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01094 IPR003439 ABC transporter-like LL3_01094 IPR003593 AAA+ ATPase domain LL3_01095 IPR010288 Bacterial ABC transporter EcsB LL3_01096 IPR024787 EcsC protein LL3_01097 IPR017439 Amidohydrolase LL3_01097 IPR036264 Bacterial exopeptidase dimerisation domain LL3_01097 IPR002933 Peptidase M20 LL3_01097 IPR011650 Peptidase M20, dimerisation domain LL3_01099 IPR011008 Dimeric alpha-beta barrel LL3_01099 IPR007138 Antibiotic biosynthesis monooxygenase domain LL3_01100 IPR023346 Lysozyme-like domain superfamily LL3_01100 IPR001264 Glycosyl transferase, family 51 LL3_01100 IPR012338 Beta-lactamase/transpeptidase-like LL3_01100 IPR001460 Penicillin-binding protein, transpeptidase LL3_01100 IPR036950 Penicillin binding protein transglycosylase domain LL3_01101 IPR006361 Uroporphyrinogen decarboxylase HemE LL3_01101 IPR038071 UROD/MetE-like superfamily LL3_01101 IPR000257 Uroporphyrinogen decarboxylase (URO-D) LL3_01104 IPR009057 Homeobox-like domain superfamily LL3_01104 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily LL3_01104 IPR041490 HTH-type transcriptional repressor KstR2, C-terminal LL3_01104 IPR023772 DNA-binding HTH domain, TetR-type, conserved site LL3_01104 IPR001647 DNA-binding HTH domain, TetR-type LL3_01105 IPR017500 Phage infection protein, YhgE, N-terminal LL3_01105 IPR023908 xxxLxxG heptad repeat LL3_01105 IPR017501 Phage infection protein, YhgE, C-terminal LL3_01107 IPR016039 Thiolase-like LL3_01107 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal LL3_01107 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 LL3_01107 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LL3_01109 IPR008007 Peptidase M42 LL3_01109 IPR023367 Peptidase M42, domain 2 LL3_01110 IPR036458 Sodium:dicarboxylate symporter superfamily LL3_01110 IPR001991 Sodium:dicarboxylate symporter LL3_01110 IPR018107 Sodium:dicarboxylate symporter, conserved site LL3_01110 IPR033380 Glutamate-aspartate symport protein GltP/GltT LL3_01112 IPR001279 Metallo-beta-lactamase LL3_01112 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like LL3_01113 IPR019491 Lipoate protein ligase, C-terminal LL3_01113 IPR004562 Lipoyltransferase/lipoate-protein ligase LL3_01113 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain LL3_01114 IPR036291 NAD(P)-binding domain superfamily LL3_01114 IPR016040 NAD(P)-binding domain LL3_01115 IPR020845 AMP-binding, conserved site LL3_01115 IPR000873 AMP-dependent synthetase/ligase LL3_01115 IPR042099 AMP-dependent synthetase-like superfamily LL3_01115 IPR025110 AMP-binding enzyme, C-terminal domain LL3_01115 IPR020459 AMP-binding LL3_01117 IPR032456 CAAX prenyl protease 1, N-terminal LL3_01117 IPR027057 CAAX prenyl protease 1 LL3_01117 IPR001915 Peptidase M48 LL3_01118 IPR034202 Subtilisin Carlsberg-like catalytic domain LL3_01118 IPR036852 Peptidase S8/S53 domain superfamily LL3_01118 IPR022398 Peptidase S8, subtilisin, His-active site LL3_01118 IPR037045 Peptidase S8 propeptide/proteinase inhibitor I9 superfamily LL3_01118 IPR023828 Peptidase S8, subtilisin, Ser-active site LL3_01118 IPR010259 Peptidase S8 propeptide/proteinase inhibitor I9 LL3_01118 IPR015500 Peptidase S8, subtilisin-related LL3_01118 IPR000209 Peptidase S8/S53 domain LL3_01118 IPR023827 Peptidase S8, subtilisin, Asp-active site LL3_01119 IPR002491 ABC transporter periplasmic binding domain LL3_01120 IPR013078 Histidine phosphatase superfamily, clade-1 LL3_01120 IPR029033 Histidine phosphatase superfamily LL3_01120 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site LL3_01121 IPR002155 Thiolase LL3_01121 IPR020617 Thiolase, C-terminal LL3_01121 IPR016039 Thiolase-like LL3_01121 IPR020613 Thiolase, conserved site LL3_01121 IPR020616 Thiolase, N-terminal LL3_01122 IPR042099 AMP-dependent synthetase-like superfamily LL3_01122 IPR020845 AMP-binding, conserved site LL3_01122 IPR025110 AMP-binding enzyme, C-terminal domain LL3_01122 IPR000873 AMP-dependent synthetase/ligase LL3_01123 IPR003784 BioY protein LL3_01124 IPR009050 Globin-like superfamily LL3_01124 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain LL3_01124 IPR012292 Globin/Protoglobin LL3_01124 IPR039379 Protoglobin, globin sensor domain LL3_01125 IPR038010 YhfW, C-terminal Rieske domain LL3_01125 IPR005805 Rieske iron-sulphur protein, C-terminal LL3_01125 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily LL3_01125 IPR017941 Rieske [2Fe-2S] iron-sulphur domain LL3_01125 IPR036188 FAD/NAD(P)-binding domain superfamily LL3_01125 IPR006076 FAD dependent oxidoreductase LL3_01126 IPR036291 NAD(P)-binding domain superfamily LL3_01126 IPR002347 Short-chain dehydrogenase/reductase SDR LL3_01126 IPR020904 Short-chain dehydrogenase/reductase, conserved site LL3_01127 IPR014957 IDEAL domain LL3_01127 IPR027393 Virus scaffolding protein, C-terminal LL3_01128 IPR010461 Competence protein ComK LL3_01129 IPR014922 Domain of unknown function DUF1801 LL3_01131 IPR029143 Protein of unknown function, YrpD LL3_01131 IPR038682 YrpD-like superfamily LL3_01132 IPR008613 Excalibur calcium-binding domain LL3_01133 IPR002765 Uncharacterised protein family UPF0145 LL3_01133 IPR035439 UPF0145 domain superfamily LL3_01134 IPR038377 Sodium/glucose symporter superfamily LL3_01134 IPR001734 Sodium/solute symporter LL3_01135 IPR021741 Protein of unknown function DUF3311 LL3_01137 IPR015414 Transmembrane protein TMEM64 LL3_01137 IPR032816 SNARE associated Golgi protein LL3_01138 IPR019756 Peptidase S26A, signal peptidase I, serine active site LL3_01138 IPR019757 Peptidase S26A, signal peptidase I, lysine active site LL3_01138 IPR019758 Peptidase S26A, signal peptidase I, conserved site LL3_01138 IPR000223 Peptidase S26A, signal peptidase I LL3_01138 IPR036286 LexA/Signal peptidase-like superfamily LL3_01138 IPR019533 Peptidase S26 LL3_01140 IPR036188 FAD/NAD(P)-binding domain superfamily LL3_01140 IPR002938 FAD-binding domain LL3_01141 IPR036390 Winged helix DNA-binding domain superfamily LL3_01141 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_01141 IPR023187 Transcriptional regulator MarR-type, conserved site LL3_01141 IPR000835 MarR-type HTH domain LL3_01142 IPR007820 AbrB family LL3_01142 IPR017516 AbrB duplication LL3_01143 IPR020846 Major facilitator superfamily domain LL3_01143 IPR011701 Major facilitator superfamily LL3_01143 IPR004734 Multidrug resistance protein LL3_01143 IPR005829 Sugar transporter, conserved site LL3_01143 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG LL3_01143 IPR036259 MFS transporter superfamily LL3_01144 IPR013572 Transcription regulator MAATS, C-terminal LL3_01144 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily LL3_01144 IPR001647 DNA-binding HTH domain, TetR-type LL3_01144 IPR023772 DNA-binding HTH domain, TetR-type, conserved site LL3_01144 IPR009057 Homeobox-like domain superfamily LL3_01146 IPR009078 Ferritin-like superfamily LL3_01146 IPR003251 Rubrerythrin LL3_01147 IPR007353 Protein of unknown function DUF421 LL3_01147 IPR023090 UPF0702, alpha/beta domain superfamily LL3_01148 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01148 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type LL3_01148 IPR014140 DNA helicase subunit AddB LL3_01148 IPR014016 UvrD-like helicase, ATP-binding domain LL3_01148 IPR014017 UvrD-like DNA helicase, C-terminal LL3_01148 IPR000212 DNA helicase, UvrD/REP type LL3_01149 IPR000212 DNA helicase, UvrD/REP type LL3_01149 IPR014017 UvrD-like DNA helicase, C-terminal LL3_01149 IPR011604 Exonuclease, phage-type/RecB, C-terminal LL3_01149 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type LL3_01149 IPR011335 Restriction endonuclease type II-like LL3_01149 IPR014016 UvrD-like helicase, ATP-binding domain LL3_01149 IPR034739 UvrD/AddA helicase, N-terminal LL3_01149 IPR014152 DNA helicase subunit AddA LL3_01149 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01150 IPR004593 Nuclease SbcCD subunit D LL3_01150 IPR041796 Mre11 nuclease, N-terminal metallophosphatase domain LL3_01150 IPR029052 Metallo-dependent phosphatase-like LL3_01150 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type LL3_01150 IPR026843 Nuclease SbcCD subunit D, C-terminal domain LL3_01151 IPR038729 Rad50/SbcC-type AAA domain LL3_01151 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01153 IPR019618 Spore germination protein GerPA/GerPF LL3_01154 IPR024496 Spore germination protein GerPE LL3_01155 IPR017257 Spore germination protein GerPD, predicted LL3_01156 IPR019673 Spore germination protein GerPC LL3_01157 IPR024255 Spore germination GerPB LL3_01158 IPR019618 Spore germination protein GerPA/GerPF LL3_01160 IPR018540 Aspartyl-phosphate phosphatase Spo0E-like LL3_01160 IPR037208 Aspartyl-phosphate phosphatase Spo0E-like superfamily LL3_01162 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily LL3_01162 IPR011234 Fumarylacetoacetase-like, C-terminal LL3_01163 IPR010899 Protein of unknown function UPF0344 LL3_01165 IPR041498 Bacterial Ig domain LL3_01165 IPR015500 Peptidase S8, subtilisin-related LL3_01165 IPR023828 Peptidase S8, subtilisin, Ser-active site LL3_01165 IPR022398 Peptidase S8, subtilisin, His-active site LL3_01165 IPR036852 Peptidase S8/S53 domain superfamily LL3_01165 IPR000209 Peptidase S8/S53 domain LL3_01165 IPR034084 Thermitase-like, domain LL3_01165 IPR013783 Immunoglobulin-like fold LL3_01166 IPR024488 Protein of unknown function DUF2777 LL3_01167 IPR006426 Asparagine synthase, glutamine-hydrolyzing LL3_01167 IPR001962 Asparagine synthase LL3_01167 IPR029055 Nucleophile aminohydrolases, N-terminal LL3_01167 IPR033738 Asparagine synthase, N-terminal domain LL3_01167 IPR017932 Glutamine amidotransferase type 2 domain LL3_01168 IPR008949 Isoprenoid synthase domain superfamily LL3_01169 IPR002528 Multi antimicrobial extrusion protein LL3_01170 IPR003313 AraC-type arabinose-binding/dimerisation domain LL3_01170 IPR018060 DNA binding HTH domain, AraC-type LL3_01170 IPR009057 Homeobox-like domain superfamily LL3_01170 IPR037923 Transcription regulator HTH-like LL3_01170 IPR018062 HTH domain AraC-type, conserved site LL3_01171 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LL3_01171 IPR000843 LacI-type HTH domain LL3_01171 IPR028082 Periplasmic binding protein-like I LL3_01173 IPR000683 Oxidoreductase, N-terminal LL3_01173 IPR036291 NAD(P)-binding domain superfamily LL3_01173 IPR004104 Oxidoreductase, C-terminal LL3_01174 IPR007837 DNA damage-inducible protein DinB LL3_01174 IPR034660 DinB/YfiT-like putative metalloenzymes LL3_01175 IPR001123 Amino acid exporter protein, LeuE-type LL3_01176 IPR015424 Pyridoxal phosphate-dependent transferase LL3_01176 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_01176 IPR036390 Winged helix DNA-binding domain superfamily LL3_01176 IPR004839 Aminotransferase, class I/classII LL3_01176 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_01176 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_01176 IPR000524 Transcription regulator HTH, GntR LL3_01177 IPR001646 Pentapeptide repeat LL3_01178 IPR016181 Acyl-CoA N-acyltransferase LL3_01178 IPR000182 GNAT domain LL3_01178 IPR039143 Glucosamine 6-phosphate N-acetyltransferase LL3_01179 IPR036589 Homocysteine-binding domain superfamily LL3_01179 IPR003726 Homocysteine-binding domain LL3_01179 IPR029041 FAD-linked oxidoreductase-like LL3_01179 IPR003171 Methylenetetrahydrofolate reductase LL3_01181 IPR035571 UPF0234-like, C-terminal LL3_01181 IPR036183 YajQ-like superfamily LL3_01181 IPR035570 UPF0234, N-terminal LL3_01181 IPR007551 Protein of unknown function DUF520 LL3_01182 IPR022967 RNA-binding domain, S1 LL3_01182 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_01182 IPR003029 S1 domain LL3_01182 IPR014464 Conserved virulence factor B LL3_01182 IPR039566 Conserved virulence factor B, S1 domain LL3_01182 IPR040764 Conserved virulence factor B-like, winged helix domain LL3_01182 IPR012340 Nucleic acid-binding, OB-fold LL3_01184 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain LL3_01184 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain LL3_01184 IPR003660 HAMP domain LL3_01184 IPR004090 Chemotaxis methyl-accepting receptor LL3_01185 IPR001128 Cytochrome P450 LL3_01185 IPR002401 Cytochrome P450, E-class, group I LL3_01185 IPR036396 Cytochrome P450 superfamily LL3_01187 IPR003797 DegV LL3_01188 IPR003740 Uncharacterised membrane protein YitT LL3_01188 IPR019264 Domain of unknown function DUF2179 LL3_01188 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal LL3_01189 IPR038144 Intracellular proteinase inhibitor LL3_01189 IPR020481 Intracellular proteinase inhibitor BsuPI LL3_01190 IPR024217 Protein of unknown function DUF3813 LL3_01192 IPR036412 HAD-like superfamily LL3_01192 IPR000150 Cof family LL3_01192 IPR006379 HAD-superfamily hydrolase, subfamily IIB LL3_01192 IPR023214 HAD superfamily LL3_01193 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain LL3_01193 IPR029058 Alpha/Beta hydrolase fold LL3_01194 IPR034904 Fe-S cluster assembly domain superfamily LL3_01194 IPR002744 MIP18 family-like LL3_01195 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase LL3_01195 IPR037523 Vicinal oxygen chelate (VOC) domain LL3_01195 IPR022858 Metallothiol transferase FosB LL3_01195 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain LL3_01196 IPR036318 FAD-binding, type PCMH-like superfamily LL3_01196 IPR016166 FAD-binding domain, PCMH-type LL3_01196 IPR006094 FAD linked oxidase, N-terminal LL3_01196 IPR016169 FAD-binding, type PCMH, subdomain 2 LL3_01196 IPR016164 FAD-linked oxidase-like, C-terminal LL3_01197 IPR011701 Major facilitator superfamily LL3_01197 IPR020846 Major facilitator superfamily domain LL3_01197 IPR036259 MFS transporter superfamily LL3_01198 IPR000534 Semialdehyde dehydrogenase, NAD-binding LL3_01198 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 LL3_01198 IPR012280 Semialdehyde dehydrogenase, dimerisation domain LL3_01198 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site LL3_01198 IPR036291 NAD(P)-binding domain superfamily LL3_01199 IPR016117 ArgJ-like domain superfamily LL3_01199 IPR002813 Arginine biosynthesis protein ArgJ LL3_01199 IPR042195 ArgJ beta chain, C-terminal domain LL3_01200 IPR036393 Acetylglutamate kinase-like superfamily LL3_01200 IPR004662 Acetylglutamate kinase family LL3_01200 IPR037528 Acetylglutamate kinase ArgB LL3_01200 IPR001048 Aspartate/glutamate/uridylate kinase LL3_01200 IPR001057 Glutamate/acetylglutamate kinase LL3_01201 IPR015424 Pyridoxal phosphate-dependent transferase LL3_01201 IPR005814 Aminotransferase class-III LL3_01201 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_01201 IPR004636 Acetylornithine/Succinylornithine transaminase family LL3_01201 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_01202 IPR035686 Carbamoyl-phosphate synthase small subunit, GATase1 domain LL3_01202 IPR006274 Carbamoyl-phosphate synthase, small subunit LL3_01202 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain LL3_01202 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily LL3_01202 IPR029062 Class I glutamine amidotransferase-like LL3_01202 IPR017926 Glutamine amidotransferase LL3_01203 IPR011607 Methylglyoxal synthase-like domain LL3_01203 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain LL3_01203 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain LL3_01203 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain LL3_01203 IPR011761 ATP-grasp fold LL3_01203 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily LL3_01203 IPR016185 Pre-ATP-grasp domain superfamily LL3_01203 IPR013815 ATP-grasp fold, subdomain 1 LL3_01203 IPR006275 Carbamoyl-phosphate synthase, large subunit LL3_01204 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily LL3_01204 IPR006130 Aspartate/ornithine carbamoyltransferase LL3_01204 IPR002292 Ornithine/putrescine carbamoyltransferase LL3_01204 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding LL3_01204 IPR024904 Ornithine carbamoyltransferase LL3_01204 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain LL3_01205 IPR025549 YjzC-like protein LL3_01206 IPR021324 Protein of unknown function DUF2929 LL3_01207 IPR029058 Alpha/Beta hydrolase fold LL3_01209 IPR003760 ABC transporter substrate-binding protein PnrA-like LL3_01209 IPR028082 Periplasmic binding protein-like I LL3_01210 IPR024558 ComZ LL3_01212 IPR016039 Thiolase-like LL3_01212 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 LL3_01212 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal LL3_01212 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LL3_01213 IPR000794 Beta-ketoacyl synthase LL3_01213 IPR018201 Beta-ketoacyl synthase, active site LL3_01213 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 LL3_01213 IPR014031 Beta-ketoacyl synthase, C-terminal LL3_01213 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain LL3_01213 IPR016039 Thiolase-like LL3_01213 IPR014030 Beta-ketoacyl synthase, N-terminal LL3_01214 IPR018728 Domain of unknown function DUF2268 LL3_01215 IPR003439 ABC transporter-like LL3_01215 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01215 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal LL3_01215 IPR017871 ABC transporter, conserved site LL3_01215 IPR003593 AAA+ ATPase domain LL3_01216 IPR003439 ABC transporter-like LL3_01216 IPR017871 ABC transporter, conserved site LL3_01216 IPR003593 AAA+ ATPase domain LL3_01216 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal LL3_01216 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01217 IPR030678 Peptide/nickel binding protein, MppA-type LL3_01217 IPR039424 Solute-binding protein family 5 LL3_01217 IPR000914 Solute-binding protein family 5 domain LL3_01217 IPR023765 Solute-binding protein family 5, conserved site LL3_01218 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LL3_01218 IPR035906 MetI-like superfamily LL3_01219 IPR035906 MetI-like superfamily LL3_01219 IPR025966 Oligopeptide transport permease C-like, N-terminal domain LL3_01219 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LL3_01220 IPR020909 UPF0736 LL3_01221 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LL3_01221 IPR002306 Tryptophan-tRNA ligase LL3_01221 IPR024109 Tryptophan-tRNA ligase, bacterial-type LL3_01221 IPR002305 Aminoacyl-tRNA synthetase, class Ic LL3_01221 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site LL3_01222 IPR039424 Solute-binding protein family 5 LL3_01222 IPR030678 Peptide/nickel binding protein, MppA-type LL3_01222 IPR023765 Solute-binding protein family 5, conserved site LL3_01222 IPR000914 Solute-binding protein family 5 domain LL3_01223 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LL3_01223 IPR035906 MetI-like superfamily LL3_01224 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LL3_01224 IPR035906 MetI-like superfamily LL3_01224 IPR025966 Oligopeptide transport permease C-like, N-terminal domain LL3_01225 IPR003439 ABC transporter-like LL3_01225 IPR017871 ABC transporter, conserved site LL3_01225 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal LL3_01225 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01225 IPR003593 AAA+ ATPase domain LL3_01226 IPR003593 AAA+ ATPase domain LL3_01226 IPR003439 ABC transporter-like LL3_01226 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal LL3_01226 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01226 IPR017871 ABC transporter, conserved site LL3_01228 IPR016181 Acyl-CoA N-acyltransferase LL3_01228 IPR000182 GNAT domain LL3_01229 IPR006660 Arsenate reductase-like LL3_01229 IPR023731 Regulatory protein Spx LL3_01229 IPR036249 Thioredoxin-like superfamily LL3_01229 IPR006504 Transcriptional regulator Spx/MgsR LL3_01230 IPR022301 Integral membrane protein YjbE LL3_01230 IPR005496 Integral membrane protein TerC LL3_01231 IPR008681 Negative regulator of genetic competence, MecA LL3_01231 IPR038471 MecA, C-terminal domain superfamily LL3_01232 IPR021176 Competence-induced protein CoiA LL3_01232 IPR010330 Competence-induced protein CoiA-like LL3_01233 IPR013647 Oligopeptidase F, N-terminal domain LL3_01233 IPR042088 Oligoendopeptidase F, C-terminal domain LL3_01233 IPR001567 Peptidase M3A/M3B catalytic domain LL3_01233 IPR004438 Peptidase M3B, oligoendopeptidase F LL3_01236 IPR001486 Truncated hemoglobin LL3_01236 IPR019795 Globin, bacterial-like, conserved site LL3_01236 IPR012292 Globin/Protoglobin LL3_01236 IPR009050 Globin-like superfamily LL3_01237 IPR000189 Prokaryotic transglycosylase, active site LL3_01237 IPR008258 Transglycosylase SLT domain 1 LL3_01237 IPR023346 Lysozyme-like domain superfamily LL3_01238 IPR023577 CYTH domain LL3_01238 IPR033469 CYTH-like domain superfamily LL3_01238 IPR009195 Uncharacterised protein family YjbK LL3_01239 IPR020908 Uncharacterised protein family UPF0738 LL3_01240 IPR007685 RelA/SpoT LL3_01241 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal LL3_01241 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal LL3_01241 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily LL3_01241 IPR002504 NAD kinase LL3_01242 IPR006225 Pseudouridine synthase, RluC/RluD LL3_01242 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site LL3_01242 IPR006145 Pseudouridine synthase, RsuA/RluA LL3_01242 IPR020103 Pseudouridine synthase, catalytic domain superfamily LL3_01242 IPR002942 RNA-binding S4 domain LL3_01243 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type LL3_01243 IPR029052 Metallo-dependent phosphatase-like LL3_01243 IPR023937 Bis(5'-nucleosyl)-tetraphosphatase PrpE LL3_01243 IPR041780 PrpE-like, metallophosphatase domain LL3_01245 IPR006037 Regulator of K+ conductance, C-terminal LL3_01245 IPR006153 Cation/H+ exchanger LL3_01245 IPR038770 Sodium/solute symporter superfamily LL3_01245 IPR003148 Regulator of K+ conductance, N-terminal LL3_01245 IPR036291 NAD(P)-binding domain superfamily LL3_01245 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily LL3_01246 IPR004305 Thiaminase-2/PQQC LL3_01246 IPR027574 Thiaminase II LL3_01246 IPR016084 Haem oxygenase-like, multi-helical LL3_01247 IPR022998 Thiamine phosphate synthase/TenI LL3_01247 IPR036206 Thiamin phosphate synthase superfamily LL3_01247 IPR013785 Aldolase-type TIM barrel LL3_01248 IPR036188 FAD/NAD(P)-binding domain superfamily LL3_01248 IPR012727 Glycine oxidase ThiO LL3_01248 IPR006076 FAD dependent oxidoreductase LL3_01249 IPR012675 Beta-grasp domain superfamily LL3_01249 IPR003749 Sulfur carrier ThiS/MoaD-like LL3_01249 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp LL3_01249 IPR010035 ThiS, thiamine-biosynthesis LL3_01250 IPR013785 Aldolase-type TIM barrel LL3_01250 IPR033983 Thiazole synthase ThiG LL3_01250 IPR008867 Thiazole synthase LL3_01251 IPR000594 THIF-type NAD/FAD binding fold LL3_01251 IPR035985 Ubiquitin-activating enzyme LL3_01252 IPR029056 Ribokinase-like LL3_01252 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase LL3_01252 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase LL3_01253 IPR002347 Short-chain dehydrogenase/reductase SDR LL3_01253 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) LL3_01253 IPR036291 NAD(P)-binding domain superfamily LL3_01254 IPR025439 Spore coat protein CotO LL3_01255 IPR019593 Spore coat protein Z/Y LL3_01257 IPR019593 Spore coat protein Z/Y LL3_01258 IPR011428 Spore coat protein X/V LL3_01260 IPR011428 Spore coat protein X/V LL3_01261 IPR010773 Mycobacterium phage PG1, Gp7 LL3_01265 IPR025942 Stage VI sporulation protein F LL3_01266 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01266 IPR034739 UvrD/AddA helicase, N-terminal LL3_01266 IPR014016 UvrD-like helicase, ATP-binding domain LL3_01266 IPR013986 DExx box DNA helicase domain superfamily LL3_01266 IPR014017 UvrD-like DNA helicase, C-terminal LL3_01266 IPR000212 DNA helicase, UvrD/REP type LL3_01268 IPR001018 Beta-lactamase, class-B, conserved site LL3_01268 IPR001279 Metallo-beta-lactamase LL3_01268 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like LL3_01270 IPR017871 ABC transporter, conserved site LL3_01270 IPR003439 ABC transporter-like LL3_01270 IPR003593 AAA+ ATPase domain LL3_01270 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01272 IPR000182 GNAT domain LL3_01272 IPR016181 Acyl-CoA N-acyltransferase LL3_01272 IPR039143 Glucosamine 6-phosphate N-acetyltransferase LL3_01273 IPR009097 Cyclic phosphodiesterase LL3_01273 IPR022932 Putative phosphoesterase YjcG LL3_01274 IPR029058 Alpha/Beta hydrolase fold LL3_01274 IPR000801 Putative esterase LL3_01275 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_01275 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_01275 IPR015424 Pyridoxal phosphate-dependent transferase LL3_01275 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme LL3_01276 IPR015424 Pyridoxal phosphate-dependent transferase LL3_01276 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_01276 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_01276 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme LL3_01279 IPR011010 DNA breaking-rejoining enzyme, catalytic core LL3_01279 IPR010998 Integrase/recombinase, N-terminal LL3_01279 IPR004107 Integrase, SAM-like, N-terminal LL3_01279 IPR002104 Integrase, catalytic domain LL3_01279 IPR013762 Integrase-like, catalytic domain superfamily LL3_01280 IPR037883 Knr4/Smi1-like domain superfamily LL3_01280 IPR018958 Knr4/Smi1-like domain LL3_01285 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01285 IPR011646 KAP family P-loop domain LL3_01286 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01286 IPR011646 KAP family P-loop domain LL3_01288 IPR014962 YolD-like protein LL3_01297 IPR012338 Beta-lactamase/transpeptidase-like LL3_01297 IPR000871 Beta-lactamase, class-A LL3_01297 IPR023650 Beta-lactamase, class-A active site LL3_01298 IPR007138 Antibiotic biosynthesis monooxygenase domain LL3_01298 IPR011008 Dimeric alpha-beta barrel LL3_01299 IPR036259 MFS transporter superfamily LL3_01299 IPR023721 Multidrug resistance protein MdtD LL3_01299 IPR020846 Major facilitator superfamily domain LL3_01299 IPR011701 Major facilitator superfamily LL3_01300 IPR036390 Winged helix DNA-binding domain superfamily LL3_01300 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_01300 IPR000835 MarR-type HTH domain LL3_01301 IPR011683 Glycosyl hydrolase family 53 LL3_01301 IPR017853 Glycoside hydrolase superfamily LL3_01303 IPR013012 Phosphotransferase system, EIIB component, type 3 LL3_01303 IPR004801 Phosphotransferase system, lactose-specific IIC component LL3_01303 IPR004501 Phosphotransferase system, EIIC component, type 3 LL3_01303 IPR003352 Phosphotransferase system, EIIC LL3_01303 IPR036095 PTS system IIB component-like superfamily LL3_01303 IPR003501 Phosphotransferase system, EIIB component, type 2/3 LL3_01303 IPR041713 PTS system lactose-specific EIICB component, IIB domain LL3_01304 IPR036542 Phosphotransferase system, lactose/cellobiose-type IIA subunit superfamily LL3_01304 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit LL3_01305 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site LL3_01305 IPR005928 6-phospho-beta-galactosidase LL3_01305 IPR001360 Glycoside hydrolase family 1 LL3_01305 IPR018120 Glycoside hydrolase family 1, active site LL3_01305 IPR017853 Glycoside hydrolase superfamily LL3_01306 IPR018356 Transcription regulator, HTH DeoR-type, conserved site LL3_01306 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_01306 IPR036390 Winged helix DNA-binding domain superfamily LL3_01306 IPR037171 NagB/RpiA transferase-like LL3_01306 IPR001034 DeoR-type HTH domain LL3_01306 IPR014036 DeoR C-terminal sensor domain LL3_01310 IPR003416 MgtC/SapB/SrpB/YhiD family LL3_01311 IPR025906 Putative motility protein LL3_01312 IPR021257 Protein of unknown function DUF2809 LL3_01313 IPR025453 Protein of unknown function DUF4309 LL3_01314 IPR006656 Molybdopterin oxidoreductase LL3_01314 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain LL3_01314 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding LL3_01314 IPR041924 Formate dehydrogenase H, N-terminal LL3_01314 IPR006478 Formate dehydrogenase, alpha subunit LL3_01314 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain LL3_01314 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site LL3_01314 IPR009010 Aspartate decarboxylase-like domain superfamily LL3_01314 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain LL3_01314 IPR036010 2Fe-2S ferredoxin-like superfamily LL3_01314 IPR006657 Molybdopterin dinucleotide-binding domain LL3_01315 IPR012440 Protein of unknown function DUF1641 LL3_01316 IPR002397 Cytochrome P450, B-class LL3_01316 IPR017972 Cytochrome P450, conserved site LL3_01316 IPR036396 Cytochrome P450 superfamily LL3_01316 IPR001128 Cytochrome P450 LL3_01317 IPR007235 Glycosyl transferase, family 28, C-terminal LL3_01317 IPR006326 UDP-glycosyltransferase, MGT LL3_01319 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily LL3_01319 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase LL3_01319 IPR039793 Uroporphyrinogen-III synthase LL3_01320 IPR005226 UPF0014 family LL3_01321 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01321 IPR017871 ABC transporter, conserved site LL3_01321 IPR005670 Phosphate transport system permease protein 1 LL3_01321 IPR003593 AAA+ ATPase domain LL3_01321 IPR003439 ABC transporter-like LL3_01322 IPR032713 Putative multidrug resistance efflux transporter LL3_01323 IPR011051 RmlC-like cupin domain superfamily LL3_01323 IPR014710 RmlC-like jelly roll fold LL3_01323 IPR006045 Cupin 1 LL3_01323 IPR014500 Uncharacterised conserved protein UCP019307, cupin-type LL3_01325 IPR012440 Protein of unknown function DUF1641 LL3_01326 IPR023753 FAD/NAD(P)-binding domain LL3_01326 IPR036188 FAD/NAD(P)-binding domain superfamily LL3_01327 IPR003766 Uronate isomerase LL3_01327 IPR032466 Metal-dependent hydrolase LL3_01328 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LL3_01328 IPR028082 Periplasmic binding protein-like I LL3_01328 IPR000843 LacI-type HTH domain LL3_01330 IPR013974 SAF domain LL3_01330 IPR007392 D-galactarate/Altronate dehydratase, C-terminal LL3_01331 IPR011006 CheY-like superfamily LL3_01331 IPR001867 OmpR/PhoB-type DNA-binding domain LL3_01331 IPR001789 Signal transduction response regulator, receiver domain LL3_01331 IPR039420 Transcriptional regulatory protein WalR-like LL3_01331 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_01332 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LL3_01332 IPR005467 Histidine kinase domain LL3_01332 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_01332 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LL3_01332 IPR003594 Histidine kinase/HSP90-like ATPase LL3_01332 IPR003660 HAMP domain LL3_01332 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LL3_01334 IPR002781 Transmembrane protein TauE-like LL3_01336 IPR007837 DNA damage-inducible protein DinB LL3_01336 IPR034660 DinB/YfiT-like putative metalloenzymes LL3_01337 IPR019734 Tetratricopeptide repeat LL3_01337 IPR040702 Response regulator aspartate phosphatase, N-terminal LL3_01337 IPR013026 Tetratricopeptide repeat-containing domain LL3_01337 IPR011990 Tetratricopeptide-like helical domain superfamily LL3_01339 IPR018392 LysM domain LL3_01339 IPR036366 PGBD superfamily LL3_01339 IPR002477 Peptidoglycan binding-like LL3_01339 IPR036365 PGBD-like superfamily LL3_01339 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily LL3_01339 IPR002502 N-acetylmuramoyl-L-alanine amidase domain LL3_01339 IPR036779 LysM domain superfamily LL3_01340 IPR037063 Bacterial Pleckstrin homology domain superfamily LL3_01340 IPR012544 Bacterial Pleckstrin homology domain LL3_01341 IPR038128 Poly-gamma-glutamate hydrolase superfamily LL3_01341 IPR008585 Poly-gamma-glutamate hydrolase LL3_01342 IPR010359 IrrE N-terminal-like domain LL3_01344 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LL3_01344 IPR001387 Cro/C1-type helix-turn-helix domain LL3_01346 IPR036390 Winged helix DNA-binding domain superfamily LL3_01347 IPR003593 AAA+ ATPase domain LL3_01347 IPR002611 IstB-like ATP-binding protein LL3_01347 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01351 IPR035530 Phage-like element PBSX protein XtrA LL3_01352 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_01352 IPR013324 RNA polymerase sigma factor, region 3/4-like LL3_01352 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 LL3_01352 IPR014284 RNA polymerase sigma-70 like domain LL3_01353 IPR018925 Phage terminase small subunit LL3_01353 IPR038713 Terminase small subunit, N-terminal domain superfamily LL3_01353 IPR005335 Terminase small subunit LL3_01354 IPR035413 Phage terminase large subunit, C-terminal LL3_01354 IPR035412 Phage terminase large subunit, N-terminal LL3_01354 IPR006437 Bacteriophage terminase, large subunit LL3_01355 IPR006944 Bacteriophage/Gene transfer agent portal protein LL3_01355 IPR016753 Phage portal protein PBSX family, Firmicutes LL3_01355 IPR006430 Phage portal protein PBSX family LL3_01356 IPR027924 Phage-like element PBSX protein, XkdF LL3_01357 IPR024455 Phage capsid LL3_01358 IPR013514 Protein of unknown function DUF3199, YqbG LL3_01358 IPR036558 YqbG-like superfamily LL3_01359 IPR038667 XkdH-like superfamily LL3_01359 IPR024556 Protein of unknown function DUF3599 LL3_01360 IPR010064 Bacteriophage HK97-gp10, putative tail-component LL3_01363 IPR035326 Phage tail sheath protein, beta-sandwich domain LL3_01363 IPR020287 Tail sheath protein, C-terminal domain LL3_01363 IPR035089 Tail sheath protein, subtilisin-like domain LL3_01364 IPR038628 XkdM-like superfamily LL3_01364 IPR018989 Phage tail tube protein LL3_01365 IPR038559 Clostridium phage phiCD119, XkdN superfamily LL3_01365 IPR014986 Clostridium phage phiCD119, XkdN LL3_01367 IPR023346 Lysozyme-like domain superfamily LL3_01367 IPR023346 Lysozyme-like domain superfamily LL3_01367 IPR008258 Transglycosylase SLT domain 1 LL3_01367 IPR023346 Lysozyme-like domain superfamily LL3_01367 IPR008258 Transglycosylase SLT domain 1 LL3_01367 IPR008258 Transglycosylase SLT domain 1 LL3_01368 IPR018392 LysM domain LL3_01368 IPR036779 LysM domain superfamily LL3_01370 IPR022555 Protein of unknown function, DUF2577 LL3_01371 IPR020288 Protein of unknown function DUF2634 LL3_01372 IPR006949 Baseplate protein J-like LL3_01373 IPR018755 Bacteriophage Mu-like, Gp48 LL3_01375 IPR008983 Tumour necrosis factor-like domain superfamily LL3_01376 IPR035950 XkdW-like superfamily LL3_01376 IPR019094 Bacteriophage SP-beta, YorD LL3_01377 IPR010022 Protein of unknown function XkdX LL3_01379 IPR019715 Haemolysin XhlA LL3_01380 IPR006479 Holin LL3_01381 IPR036365 PGBD-like superfamily LL3_01381 IPR002477 Peptidoglycan binding-like LL3_01381 IPR036366 PGBD superfamily LL3_01381 IPR036779 LysM domain superfamily LL3_01381 IPR018392 LysM domain LL3_01381 IPR002502 N-acetylmuramoyl-L-alanine amidase domain LL3_01381 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily LL3_01383 IPR025897 Antitoxin SpoIISB LL3_01384 IPR025940 Toxin SpoIISA, type II toxin-antitoxin system LL3_01385 IPR001204 Phosphate transporter LL3_01386 IPR018445 Putative phosphate transport regulator LL3_01386 IPR038078 PhoU-like domain superfamily LL3_01387 IPR002293 Amino acid/polyamine transporter I LL3_01388 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain LL3_01388 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase LL3_01388 IPR037523 Vicinal oxygen chelate (VOC) domain LL3_01389 IPR038731 Glycosyltransferase RgtA/B/C/D-like LL3_01390 IPR001173 Glycosyltransferase 2-like LL3_01390 IPR029044 Nucleotide-diphospho-sugar transferases LL3_01392 IPR036034 PDZ superfamily LL3_01392 IPR009003 Peptidase S1, PA clan LL3_01392 IPR001478 PDZ domain LL3_01392 IPR001940 Peptidase S1C LL3_01393 IPR011701 Major facilitator superfamily LL3_01393 IPR020846 Major facilitator superfamily domain LL3_01393 IPR036259 MFS transporter superfamily LL3_01394 IPR007035 Peptidase M55, D-aminopeptidase LL3_01394 IPR036177 Peptidase M55, D-aminopeptidase superfamily LL3_01394 IPR027476 D-aminopeptidase, N-terminal LL3_01394 IPR033824 D-aminopeptidase DppA LL3_01395 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LL3_01395 IPR035906 MetI-like superfamily LL3_01396 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LL3_01396 IPR025966 Oligopeptide transport permease C-like, N-terminal domain LL3_01396 IPR035906 MetI-like superfamily LL3_01397 IPR003439 ABC transporter-like LL3_01397 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal LL3_01397 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01397 IPR003593 AAA+ ATPase domain LL3_01397 IPR017871 ABC transporter, conserved site LL3_01398 IPR000914 Solute-binding protein family 5 domain LL3_01398 IPR030678 Peptide/nickel binding protein, MppA-type LL3_01398 IPR039424 Solute-binding protein family 5 LL3_01398 IPR023765 Solute-binding protein family 5, conserved site LL3_01399 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily LL3_01399 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal LL3_01399 IPR040921 LD-carboxypeptidase, C-terminal LL3_01399 IPR003507 Peptidase family S66 LL3_01399 IPR029062 Class I glutamine amidotransferase-like LL3_01399 IPR040449 LD-carboxypeptidase, N-terminal LL3_01400 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain LL3_01400 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal LL3_01400 IPR029065 Enolase C-terminal domain-like LL3_01400 IPR029017 Enolase-like, N-terminal LL3_01400 IPR036849 Enolase-like, C-terminal domain superfamily LL3_01400 IPR034603 Dipeptide epimerase LL3_01401 IPR038765 Papain-like cysteine peptidase superfamily LL3_01401 IPR000064 Endopeptidase, NLPC/P60 domain LL3_01402 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01402 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal LL3_01402 IPR017871 ABC transporter, conserved site LL3_01402 IPR003439 ABC transporter-like LL3_01402 IPR003593 AAA+ ATPase domain LL3_01403 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily LL3_01403 IPR015943 WD40/YVTN repeat-like-containing domain superfamily LL3_01403 IPR019405 Lactonase, 7-bladed beta propeller LL3_01406 IPR040170 Cytosolic acyl coenzyme A thioester hydrolase LL3_01406 IPR033120 Hotdog acyl-CoA thioesterase (ACOT)-type domain LL3_01406 IPR029069 HotDog domain superfamily LL3_01406 IPR006683 Thioesterase domain LL3_01407 IPR016181 Acyl-CoA N-acyltransferase LL3_01407 IPR000182 GNAT domain LL3_01408 IPR000390 Small multidrug resistance protein family LL3_01409 IPR000390 Small multidrug resistance protein family LL3_01410 IPR002376 Formyl transferase, N-terminal LL3_01410 IPR041729 Formyltetrahydrofolate deformylase, C-terminal hydrolase domain LL3_01410 IPR002912 ACT domain LL3_01410 IPR036477 Formyl transferase, N-terminal domain superfamily LL3_01410 IPR004810 Formyltetrahydrofolate deformylase LL3_01411 IPR036393 Acetylglutamate kinase-like superfamily LL3_01411 IPR036974 PUA domain superfamily LL3_01411 IPR001048 Aspartate/glutamate/uridylate kinase LL3_01411 IPR019797 Glutamate 5-kinase, conserved site LL3_01411 IPR041739 Glutamate-5-kinase domain LL3_01411 IPR001057 Glutamate/acetylglutamate kinase LL3_01411 IPR011529 Glutamate 5-kinase LL3_01411 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase LL3_01411 IPR015947 PUA-like superfamily LL3_01411 IPR002478 PUA domain LL3_01412 IPR016161 Aldehyde/histidinol dehydrogenase LL3_01412 IPR016163 Aldehyde dehydrogenase, C-terminal LL3_01412 IPR015590 Aldehyde dehydrogenase domain LL3_01412 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site LL3_01412 IPR016162 Aldehyde dehydrogenase, N-terminal LL3_01412 IPR012134 Glutamate-5-semialdehyde dehydrogenase LL3_01412 IPR000965 GPR domain LL3_01413 IPR015946 K homology domain-like, alpha/beta LL3_01413 IPR019953 Organic hydroperoxide resistance protein famiy LL3_01413 IPR003718 OsmC/Ohr family LL3_01413 IPR036102 OsmC/Ohr superfamily LL3_01414 IPR036390 Winged helix DNA-binding domain superfamily LL3_01414 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_01414 IPR000835 MarR-type HTH domain LL3_01415 IPR036102 OsmC/Ohr superfamily LL3_01415 IPR003718 OsmC/Ohr family LL3_01415 IPR019953 Organic hydroperoxide resistance protein famiy LL3_01415 IPR015946 K homology domain-like, alpha/beta LL3_01418 IPR011990 Tetratricopeptide-like helical domain superfamily LL3_01418 IPR019734 Tetratricopeptide repeat LL3_01418 IPR013026 Tetratricopeptide repeat-containing domain LL3_01418 IPR029044 Nucleotide-diphospho-sugar transferases LL3_01418 IPR001173 Glycosyltransferase 2-like LL3_01421 IPR036259 MFS transporter superfamily LL3_01421 IPR024989 Major facilitator superfamily associated domain LL3_01421 IPR026032 Probable 3-phenylpropionic acid transporter LL3_01422 IPR012318 Crp-type HTH domain LL3_01422 IPR000595 Cyclic nucleotide-binding domain LL3_01422 IPR018490 Cyclic nucleotide-binding-like LL3_01423 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal LL3_01423 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal LL3_01423 IPR038071 UROD/MetE-like superfamily LL3_01423 IPR006276 Cobalamin-independent methionine synthase LL3_01424 IPR023827 Peptidase S8, subtilisin, Asp-active site LL3_01424 IPR022398 Peptidase S8, subtilisin, His-active site LL3_01424 IPR000209 Peptidase S8/S53 domain LL3_01424 IPR036852 Peptidase S8/S53 domain superfamily LL3_01424 IPR034202 Subtilisin Carlsberg-like catalytic domain LL3_01424 IPR015500 Peptidase S8, subtilisin-related LL3_01424 IPR023828 Peptidase S8, subtilisin, Ser-active site LL3_01425 IPR036513 STAS domain superfamily LL3_01425 IPR002645 STAS domain LL3_01426 IPR003339 ABC/ECF transporter, transmembrane component LL3_01427 IPR003593 AAA+ ATPase domain LL3_01427 IPR003439 ABC transporter-like LL3_01427 IPR017871 ABC transporter, conserved site LL3_01427 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01428 IPR017195 ABC-type thiamin-related transport system, permease component 1, predicted LL3_01430 IPR001223 Glycoside hydrolase family 18, catalytic domain LL3_01430 IPR036779 LysM domain superfamily LL3_01430 IPR041704 CFLE, GH18 catalytic domain LL3_01430 IPR011583 Chitinase II LL3_01430 IPR029070 Chitinase insertion domain superfamily LL3_01430 IPR018392 LysM domain LL3_01430 IPR017853 Glycoside hydrolase superfamily LL3_01431 IPR022608 Transcription regulator SplA LL3_01432 IPR038076 MgtE, N-terminal domain superfamily LL3_01432 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily LL3_01432 IPR006667 SLC41 divalent cation transporters, integral membrane domain LL3_01432 IPR006669 Magnesium transporter MgtE LL3_01432 IPR006668 Magnesium transporter, MgtE intracellular domain LL3_01432 IPR000644 CBS domain LL3_01432 IPR038048 Magnesium transporter MgtE, transmembrane domain LL3_01433 IPR009061 Putative DNA-binding domain superfamily LL3_01433 IPR000551 MerR-type HTH domain LL3_01437 IPR000835 MarR-type HTH domain LL3_01437 IPR023187 Transcriptional regulator MarR-type, conserved site LL3_01437 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_01437 IPR036390 Winged helix DNA-binding domain superfamily LL3_01440 IPR012310 DNA ligase, ATP-dependent, central LL3_01440 IPR033652 LigD polymerase domain, type 3 LL3_01440 IPR014145 DNA ligase D, polymerase domain LL3_01440 IPR014143 DNA ligase D LL3_01440 IPR014146 DNA ligase D, ligase domain LL3_01441 IPR006164 Ku70/Ku80 beta-barrel domain LL3_01441 IPR016194 SPOC-like, C-terminal domain superfamily LL3_01441 IPR009187 Non-homologous end joining protein Ku, prokaryotic type LL3_01442 IPR035919 EAL domain superfamily LL3_01442 IPR000160 GGDEF domain LL3_01442 IPR005330 MHYT domain LL3_01442 IPR029787 Nucleotide cyclase LL3_01442 IPR035965 PAS domain superfamily LL3_01442 IPR001633 EAL domain LL3_01443 IPR032816 SNARE associated Golgi protein LL3_01444 IPR036259 MFS transporter superfamily LL3_01444 IPR022493 Integral membrane YkoY LL3_01444 IPR005496 Integral membrane protein TerC LL3_01445 IPR014284 RNA polymerase sigma-70 like domain LL3_01445 IPR014244 RNA polymerase sigma-I type LL3_01445 IPR007627 RNA polymerase sigma-70 region 2 LL3_01445 IPR013325 RNA polymerase sigma factor, region 2 LL3_01446 IPR024449 Anti-sigma factor RsgI, N-terminal LL3_01447 IPR038300 SASP, alpha/beta-type superfamily LL3_01447 IPR001448 Small acid-soluble spore protein, alpha/beta-type LL3_01447 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site LL3_01448 IPR014975 Protein of unknown function DUF1836 LL3_01449 IPR022919 Peptidase M48, protease HtpX, putative LL3_01449 IPR001915 Peptidase M48 LL3_01450 IPR003445 Cation transporter LL3_01451 IPR023090 UPF0702, alpha/beta domain superfamily LL3_01451 IPR007353 Protein of unknown function DUF421 LL3_01453 IPR002656 Acyltransferase 3 LL3_01454 IPR035965 PAS domain superfamily LL3_01454 IPR003594 Histidine kinase/HSP90-like ATPase LL3_01454 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LL3_01454 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LL3_01454 IPR013767 PAS fold LL3_01454 IPR005467 Histidine kinase domain LL3_01454 IPR000014 PAS domain LL3_01454 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LL3_01454 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_01455 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain LL3_01455 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain LL3_01455 IPR023546 Methylated-DNA--protein-cysteine methyltransferase LL3_01455 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding LL3_01455 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_01455 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily LL3_01455 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site LL3_01457 IPR027363 Methylthioribose-1-phosphate isomerase, N-terminal LL3_01457 IPR005251 Methylthioribose-1-phosphate isomerase LL3_01457 IPR037171 NagB/RpiA transferase-like LL3_01457 IPR011559 Initiation factor 2B alpha/beta/delta LL3_01457 IPR000649 Initiation factor 2B-related LL3_01458 IPR009212 Methylthioribose kinase LL3_01458 IPR011009 Protein kinase-like domain superfamily LL3_01458 IPR002575 Aminoglycoside phosphotransferase LL3_01459 IPR036526 Carbon-nitrogen hydrolase superfamily LL3_01459 IPR003010 Carbon-nitrogen hydrolase LL3_01460 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_01460 IPR004839 Aminotransferase, class I/classII LL3_01460 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_01460 IPR015424 Pyridoxal phosphate-dependent transferase LL3_01461 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal LL3_01461 IPR036422 RuBisCO large subunit, N-terminal domain superfamily LL3_01461 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal LL3_01461 IPR017717 2,3-diketo-5-methylthiopentyl-1-phosphate enolase LL3_01461 IPR036376 Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily LL3_01461 IPR033966 RuBisCO LL3_01462 IPR036412 HAD-like superfamily LL3_01462 IPR017718 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase LL3_01462 IPR006384 Pyridoxal phosphate phosphatase-related LL3_01462 IPR023214 HAD superfamily LL3_01463 IPR036409 Class II aldolase/adducin N-terminal domain superfamily LL3_01463 IPR017714 Methylthioribulose-1-phosphate dehydratase LL3_01463 IPR001303 Class II aldolase/adducin N-terminal LL3_01464 IPR011051 RmlC-like cupin domain superfamily LL3_01464 IPR004313 Acireductone dioxygenase ARD family LL3_01464 IPR023956 Acireductone dioxygenase ARD, bacteria LL3_01464 IPR014710 RmlC-like jelly roll fold LL3_01465 IPR018540 Aspartyl-phosphate phosphatase Spo0E-like LL3_01465 IPR037208 Aspartyl-phosphate phosphatase Spo0E-like superfamily LL3_01466 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_01466 IPR033479 Double Cache domain 1 LL3_01466 IPR005467 Histidine kinase domain LL3_01466 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LL3_01466 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LL3_01466 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LL3_01466 IPR029151 Periplasmic sensor-like domain superfamily LL3_01466 IPR003594 Histidine kinase/HSP90-like ATPase LL3_01468 IPR000835 MarR-type HTH domain LL3_01468 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_01468 IPR036390 Winged helix DNA-binding domain superfamily LL3_01468 IPR023187 Transcriptional regulator MarR-type, conserved site LL3_01469 IPR025713 Motility protein B, N-terminal domain LL3_01469 IPR006665 OmpA-like domain LL3_01469 IPR036737 OmpA-like domain superfamily LL3_01470 IPR002898 MotA/TolQ/ExbB proton channel LL3_01470 IPR000540 Flagellar motor protein MotA, conserved site LL3_01472 IPR001943 UVR domain LL3_01472 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01472 IPR041546 ClpA/ClpB, AAA lid domain LL3_01472 IPR028299 ClpA/B, conserved site 2 LL3_01472 IPR001270 ClpA/B family LL3_01472 IPR019489 Clp ATPase, C-terminal LL3_01472 IPR003959 ATPase, AAA-type, core LL3_01472 IPR003593 AAA+ ATPase domain LL3_01472 IPR018368 ClpA/B, conserved site 1 LL3_01473 IPR038728 Uncharacterized membrane protein YkvI LL3_01476 IPR018317 Queuosine biosynthesis protein QueC LL3_01476 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LL3_01477 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily LL3_01477 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family LL3_01478 IPR017742 7-carboxy-7-deazaguanine synthase LL3_01478 IPR007197 Radical SAM LL3_01478 IPR013785 Aldolase-type TIM barrel LL3_01478 IPR024924 7-carboxy-7-deazaguanine synthase-like LL3_01479 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF LL3_01479 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 LL3_01482 IPR023105 YkvR-like superfamily LL3_01482 IPR021596 Protein of unknown function DUF3219 LL3_01484 IPR018690 Protein of unknown function DUF2187 LL3_01485 IPR042047 Cell wall hydrolase SleB, domain 1 LL3_01485 IPR011105 Cell wall hydrolase, SleB LL3_01486 IPR002797 Polysaccharide biosynthesis protein LL3_01486 IPR024923 Peptidoglycan biosynthesis protein, SpoVB-type LL3_01487 IPR036249 Thioredoxin-like superfamily LL3_01487 IPR017937 Thioredoxin, conserved site LL3_01487 IPR013766 Thioredoxin domain LL3_01487 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant LL3_01488 IPR023298 P-type ATPase, transmembrane domain superfamily LL3_01488 IPR023299 P-type ATPase, cytoplasmic domain N LL3_01488 IPR018303 P-type ATPase, phosphorylation site LL3_01488 IPR001757 P-type ATPase LL3_01488 IPR027256 P-type ATPase, subfamily IB LL3_01488 IPR023214 HAD superfamily LL3_01488 IPR036412 HAD-like superfamily LL3_01488 IPR008250 P-type ATPase, A domain superfamily LL3_01489 IPR000994 Peptidase M24 LL3_01489 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal LL3_01489 IPR001714 Peptidase M24, methionine aminopeptidase LL3_01489 IPR036005 Creatinase/aminopeptidase-like LL3_01489 IPR000587 Creatinase, N-terminal LL3_01489 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site LL3_01491 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LL3_01491 IPR001761 Periplasmic binding protein/LacI sugar binding domain LL3_01491 IPR000843 LacI-type HTH domain LL3_01491 IPR028082 Periplasmic binding protein-like I LL3_01492 IPR001550 Transcription antiterminator, conserved site LL3_01492 IPR011608 PRD domain LL3_01492 IPR036650 CAT RNA-binding domain superfamily LL3_01492 IPR004341 CAT RNA-binding domain LL3_01492 IPR036634 PRD domain superfamily LL3_01493 IPR013013 Phosphotransferase system, EIIC component, type 1 LL3_01493 IPR003352 Phosphotransferase system, EIIC LL3_01493 IPR011055 Duplicated hybrid motif LL3_01493 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 LL3_01493 IPR001996 Phosphotransferase system, IIB component, type 1 LL3_01493 IPR011299 PTS system glucose-specific IIBC component LL3_01493 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site LL3_01493 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component LL3_01493 IPR036878 Glucose permease domain IIB LL3_01494 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site LL3_01494 IPR002114 Phosphotransferase system, HPr serine phosphorylation site LL3_01494 IPR035895 HPr-like superfamily LL3_01494 IPR000032 Phosphocarrier protein HPr-like LL3_01495 IPR023151 PEP-utilising enzyme, conserved site LL3_01495 IPR040442 Pyruvate kinase-like domain superfamily LL3_01495 IPR024692 Phosphotransferase system, enzyme I LL3_01495 IPR000121 PEP-utilising enzyme, C-terminal LL3_01495 IPR018274 PEP-utilising enzyme, active site LL3_01495 IPR008731 Phosphotransferase system, enzyme I N-terminal LL3_01495 IPR036637 Phosphohistidine domain superfamily LL3_01495 IPR006318 Phosphotransferase system, enzyme I-like LL3_01495 IPR036618 PtsI, HPr-binding domain superfamily LL3_01495 IPR008279 PEP-utilising enzyme, mobile domain LL3_01495 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily LL3_01496 IPR022608 Transcription regulator SplA LL3_01497 IPR007197 Radical SAM LL3_01497 IPR023897 Spore photoproduct lyase LL3_01497 IPR034560 Spore photoproduct lyase, Bacilli type LL3_01498 IPR029151 Periplasmic sensor-like domain superfamily LL3_01498 IPR033479 Double Cache domain 1 LL3_01498 IPR003660 HAMP domain LL3_01498 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain LL3_01499 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site LL3_01499 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain LL3_01499 IPR036291 NAD(P)-binding domain superfamily LL3_01499 IPR015815 3-hydroxyisobutyrate dehydrogenase-related LL3_01499 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily LL3_01499 IPR013328 6-phosphogluconate dehydrogenase, domain 2 LL3_01499 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding LL3_01500 IPR014258 CAP domain, YkwD-like LL3_01500 IPR014044 CAP domain LL3_01500 IPR035940 CAP superfamily LL3_01501 IPR036138 Penicillin-binding protein, dimerisation domain superfamily LL3_01501 IPR005311 Penicillin-binding protein, dimerisation domain LL3_01501 IPR012338 Beta-lactamase/transpeptidase-like LL3_01501 IPR001460 Penicillin-binding protein, transpeptidase LL3_01502 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LL3_01502 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LL3_01502 IPR001610 PAC motif LL3_01502 IPR000014 PAS domain LL3_01502 IPR035965 PAS domain superfamily LL3_01502 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LL3_01502 IPR013767 PAS fold LL3_01502 IPR013655 PAS fold-3 LL3_01502 IPR005467 Histidine kinase domain LL3_01502 IPR003594 Histidine kinase/HSP90-like ATPase LL3_01502 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_01503 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_01503 IPR004839 Aminotransferase, class I/classII LL3_01503 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_01503 IPR015424 Pyridoxal phosphate-dependent transferase LL3_01503 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site LL3_01506 IPR001789 Signal transduction response regulator, receiver domain LL3_01506 IPR024181 Chemotaxis response regulator CheV LL3_01506 IPR011006 CheY-like superfamily LL3_01506 IPR002545 CheW-like domain LL3_01506 IPR036061 CheW-like domain superfamily LL3_01507 IPR025552 YkyB-like protein LL3_01508 IPR004751 Drug antiporter protein LL3_01508 IPR011701 Major facilitator superfamily LL3_01508 IPR020846 Major facilitator superfamily domain LL3_01508 IPR036259 MFS transporter superfamily LL3_01509 IPR018392 LysM domain LL3_01509 IPR036779 LysM domain superfamily LL3_01509 IPR005490 L,D-transpeptidase catalytic domain LL3_01509 IPR038063 L,D-transpeptidase catalytic domain-like LL3_01510 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type LL3_01510 IPR029052 Metallo-dependent phosphatase-like LL3_01510 IPR006311 Twin-arginine translocation pathway, signal sequence LL3_01510 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal LL3_01511 IPR036291 NAD(P)-binding domain superfamily LL3_01511 IPR002347 Short-chain dehydrogenase/reductase SDR LL3_01513 IPR035919 EAL domain superfamily LL3_01513 IPR018842 YkuI, C-terminal LL3_01513 IPR029151 Periplasmic sensor-like domain superfamily LL3_01513 IPR001633 EAL domain LL3_01514 IPR038073 YkuJ-like superfamily LL3_01514 IPR014904 Protein of unknown function DUF1797 LL3_01515 IPR007405 Bacteriophage KVP40, Orf299 LL3_01516 IPR025446 Antirepressor AbbA LL3_01518 IPR005119 LysR, substrate-binding LL3_01518 IPR000847 Transcription regulator HTH, LysR LL3_01518 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_01518 IPR036390 Winged helix DNA-binding domain superfamily LL3_01519 IPR029039 Flavoprotein-like superfamily LL3_01519 IPR008254 Flavodoxin/nitric oxide synthase LL3_01519 IPR010087 Flavodoxin, short chain LL3_01519 IPR001094 Flavodoxin-like LL3_01520 IPR015943 WD40/YVTN repeat-like-containing domain superfamily LL3_01521 IPR001226 Flavodoxin, conserved site LL3_01521 IPR010087 Flavodoxin, short chain LL3_01521 IPR001094 Flavodoxin-like LL3_01521 IPR008254 Flavodoxin/nitric oxide synthase LL3_01521 IPR029039 Flavoprotein-like superfamily LL3_01522 IPR013710 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase, N-terminal LL3_01522 IPR011004 Trimeric LpxA-like superfamily LL3_01522 IPR018357 Hexapeptide transferase, conserved site LL3_01522 IPR001451 Hexapeptide repeat LL3_01522 IPR019873 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase, DapH LL3_01523 IPR023905 Acetyldiaminopimelate deacetylase LL3_01523 IPR017439 Amidohydrolase LL3_01523 IPR036264 Bacterial exopeptidase dimerisation domain LL3_01523 IPR002933 Peptidase M20 LL3_01523 IPR011650 Peptidase M20, dimerisation domain LL3_01524 IPR005370 Uncharacterised protein family UPF0180 LL3_01525 IPR010920 LSM domain superfamily LL3_01525 IPR023408 Mechanosensitive ion channel MscS domain superfamily LL3_01525 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 LL3_01525 IPR011066 Mechanosensitive ion channel MscS, C-terminal LL3_01525 IPR006685 Mechanosensitive ion channel MscS LL3_01527 IPR036249 Thioredoxin-like superfamily LL3_01527 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant LL3_01527 IPR013766 Thioredoxin domain LL3_01531 IPR013482 Molybdenum cofactor guanylyltransferase LL3_01531 IPR029044 Nucleotide-diphospho-sugar transferases LL3_01531 IPR025877 MobA-like NTP transferase LL3_01532 IPR000594 THIF-type NAD/FAD binding fold LL3_01532 IPR035985 Ubiquitin-activating enzyme LL3_01533 IPR005110 MoeA, N-terminal and linker domain LL3_01533 IPR036135 MoeA, N-terminal and linker domain superfamily LL3_01533 IPR036425 MoaB/Mog-like domain superfamily LL3_01533 IPR001453 MoaB/Mog domain LL3_01533 IPR005111 MoeA, C-terminal, domain IV LL3_01533 IPR036688 MoeA, C-terminal, domain IV superfamily LL3_01533 IPR038987 Molybdopterin biosynthesis protein MoeA-like LL3_01534 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01534 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain LL3_01535 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily LL3_01535 IPR003448 Molybdopterin biosynthesis MoaE LL3_01536 IPR003749 Sulfur carrier ThiS/MoaD-like LL3_01536 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp LL3_01536 IPR012675 Beta-grasp domain superfamily LL3_01538 IPR006977 Yip1 domain LL3_01539 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain LL3_01539 IPR006143 RND efflux pump, membrane fusion protein LL3_01540 IPR003593 AAA+ ATPase domain LL3_01540 IPR003439 ABC transporter-like LL3_01540 IPR017871 ABC transporter, conserved site LL3_01540 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01541 IPR025857 MacB-like periplasmic core domain LL3_01541 IPR005085 Carbohydrate binding module family 25 LL3_01541 IPR003838 ABC transporter permease protein domain LL3_01542 IPR036390 Winged helix DNA-binding domain superfamily LL3_01542 IPR001034 DeoR-type HTH domain LL3_01542 IPR037171 NagB/RpiA transferase-like LL3_01542 IPR014036 DeoR C-terminal sensor domain LL3_01542 IPR018356 Transcription regulator, HTH DeoR-type, conserved site LL3_01543 IPR029056 Ribokinase-like LL3_01543 IPR017583 Tagatose/fructose phosphokinase LL3_01543 IPR022463 Fructose 1-phosphate kinase LL3_01543 IPR011611 Carbohydrate kinase PfkB LL3_01543 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site LL3_01544 IPR013011 Phosphotransferase system, EIIB component, type 2 LL3_01544 IPR004715 Phosphotransferase system, IIA component fructose subfamily LL3_01544 IPR002178 PTS EIIA type-2 domain LL3_01544 IPR036095 PTS system IIB component-like superfamily LL3_01544 IPR006327 Phosphotransferase system, fructose IIC component LL3_01544 IPR003501 Phosphotransferase system, EIIB component, type 2/3 LL3_01544 IPR003353 Phosphotransferase system, fructose-specific IIB subunit LL3_01544 IPR016152 Phosphotransferase/anion transporter LL3_01544 IPR013014 Phosphotransferase system, EIIC component, type 2 LL3_01545 IPR036286 LexA/Signal peptidase-like superfamily LL3_01545 IPR019756 Peptidase S26A, signal peptidase I, serine active site LL3_01545 IPR019757 Peptidase S26A, signal peptidase I, lysine active site LL3_01545 IPR019758 Peptidase S26A, signal peptidase I, conserved site LL3_01545 IPR000223 Peptidase S26A, signal peptidase I LL3_01545 IPR019533 Peptidase S26 LL3_01547 IPR003439 ABC transporter-like LL3_01547 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01547 IPR003593 AAA+ ATPase domain LL3_01547 IPR032781 ABC-transporter extension domain LL3_01548 IPR013332 Ketopantoate reductase, N-terminal domain LL3_01548 IPR036291 NAD(P)-binding domain superfamily LL3_01548 IPR013752 Ketopantoate reductase, C-terminal domain LL3_01548 IPR003710 Ketopantoate reductase ApbA/PanE LL3_01548 IPR013328 6-phosphogluconate dehydrogenase, domain 2 LL3_01548 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily LL3_01549 IPR000787 Peptidase M29 LL3_01549 IPR035097 Peptidase M29, N-terminal LL3_01550 IPR035379 Uncharacterized protein YkpC-like LL3_01551 IPR004753 Cell shape determining protein MreB LL3_01552 IPR037914 SpoVT-AbrB domain superfamily LL3_01552 IPR007159 SpoVT-AbrB domain LL3_01552 IPR040678 AbrB, C-terminal LL3_01553 IPR003594 Histidine kinase/HSP90-like ATPase LL3_01553 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_01553 IPR005467 Histidine kinase domain LL3_01553 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LL3_01553 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LL3_01553 IPR001610 PAC motif LL3_01553 IPR000014 PAS domain LL3_01553 IPR000700 PAS-associated, C-terminal LL3_01553 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LL3_01553 IPR013767 PAS fold LL3_01553 IPR035965 PAS domain superfamily LL3_01554 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like LL3_01554 IPR039126 Gamma-glutamylaminecyclotransferase LL3_01554 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily LL3_01554 IPR013024 Gamma-glutamyl cyclotransferase-like LL3_01555 IPR036291 NAD(P)-binding domain superfamily LL3_01555 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily LL3_01555 IPR006037 Regulator of K+ conductance, C-terminal LL3_01555 IPR003148 Regulator of K+ conductance, N-terminal LL3_01556 IPR006680 Amidohydrolase-related LL3_01556 IPR032466 Metal-dependent hydrolase LL3_01556 IPR006679 Adenine deaminase LL3_01556 IPR026912 Adenine deaminase C-terminal domain LL3_01556 IPR011059 Metal-dependent hydrolase, composite domain superfamily LL3_01557 IPR004613 Ribonuclease J LL3_01557 IPR042173 Ribonuclease J, domain 2 LL3_01557 IPR030854 Ribonuclease J, bacteria LL3_01557 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain LL3_01557 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like LL3_01557 IPR001279 Metallo-beta-lactamase LL3_01557 IPR041636 Ribonuclease J, C-terminal LL3_01557 IPR001587 Ribonuclease J, conserved site LL3_01560 IPR000150 Cof family LL3_01560 IPR036412 HAD-like superfamily LL3_01560 IPR006379 HAD-superfamily hydrolase, subfamily IIB LL3_01560 IPR023214 HAD superfamily LL3_01561 IPR023635 Peptide deformylase LL3_01561 IPR036821 Peptide deformylase superfamily LL3_01563 IPR036785 YkyA-like superfamily LL3_01563 IPR019454 Putative cell-wall binding lipoprotein YkyA-like LL3_01564 IPR029061 Thiamin diphosphate-binding fold LL3_01564 IPR017596 Pyruvate dehydrogenase E1 component subunit alpha/BCKADH E1-alpha LL3_01564 IPR001017 Dehydrogenase, E1 component LL3_01565 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II LL3_01565 IPR029061 Thiamin diphosphate-binding fold LL3_01565 IPR033248 Transketolase, C-terminal domain LL3_01565 IPR005475 Transketolase-like, pyrimidine-binding domain LL3_01566 IPR011053 Single hybrid motif LL3_01566 IPR004167 Peripheral subunit-binding domain LL3_01566 IPR036625 E3-binding domain superfamily LL3_01566 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily LL3_01566 IPR000089 Biotin/lipoyl attachment LL3_01566 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site LL3_01566 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain LL3_01567 IPR036188 FAD/NAD(P)-binding domain superfamily LL3_01567 IPR023753 FAD/NAD(P)-binding domain LL3_01567 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily LL3_01567 IPR006258 Dihydrolipoamide dehydrogenase LL3_01567 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I LL3_01567 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LL3_01567 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site LL3_01569 IPR033123 Glycosyl hydrolases family 11 (GH11) domain LL3_01569 IPR002509 NodB homology domain LL3_01569 IPR001137 Glycoside hydrolase family 11 LL3_01569 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel LL3_01569 IPR033119 Glycoside hydrolase family 11, active site 2 LL3_01569 IPR018208 Glycoside hydrolase family 11, active site 1 LL3_01569 IPR013319 Glycoside hydrolase family 11/12 LL3_01569 IPR008979 Galactose-binding-like domain superfamily LL3_01569 IPR005084 Carbohydrate binding module family 6 LL3_01569 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily LL3_01570 IPR025236 SR1 protein LL3_01571 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_01571 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_01571 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal LL3_01571 IPR000310 Orn/Lys/Arg decarboxylase, major domain LL3_01571 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily LL3_01571 IPR015424 Pyridoxal phosphate-dependent transferase LL3_01573 IPR023324 BH2638-like superfamily LL3_01573 IPR007920 Protein of unknown function UPF0223 LL3_01574 IPR009403 Protein of unknown function UPF0637 LL3_01576 IPR020583 Inositol monophosphatase, metal-binding site LL3_01576 IPR000760 Inositol monophosphatase-like LL3_01576 IPR020550 Inositol monophosphatase, conserved site LL3_01577 IPR000182 GNAT domain LL3_01577 IPR016181 Acyl-CoA N-acyltransferase LL3_01578 IPR011096 FTP domain LL3_01578 IPR025711 PepSY domain LL3_01578 IPR023612 Peptidase M4 LL3_01578 IPR027268 Peptidase M4/M1, CTD superfamily LL3_01578 IPR001570 Peptidase M4, C-terminal LL3_01578 IPR013856 Peptidase M4 domain LL3_01580 IPR027383 Putative zinc-finger LL3_01582 IPR035211 Protein of unknown function DUF5325 LL3_01584 IPR025620 YlaH-like protein LL3_01585 IPR019241 Protein of unknown function DUF2197 LL3_01586 IPR014247 Sporulation lipoprotein YhcN/YlaJ LL3_01586 IPR019076 Sporulation lipoprotein YhcN/YlaJ-like LL3_01587 IPR003714 PhoH-like protein LL3_01587 IPR029060 PIN-like domain superfamily LL3_01587 IPR002716 PIN domain LL3_01587 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01589 IPR015868 Glutaminase LL3_01589 IPR012338 Beta-lactamase/transpeptidase-like LL3_01608 IPR011990 Tetratricopeptide-like helical domain superfamily LL3_01608 IPR019734 Tetratricopeptide repeat LL3_01608 IPR040702 Response regulator aspartate phosphatase, N-terminal LL3_01608 IPR013026 Tetratricopeptide repeat-containing domain LL3_01611 IPR010572 Prophage tail endopeptidase LL3_01614 IPR004107 Integrase, SAM-like, N-terminal LL3_01614 IPR011931 Tyrosine recombinase XerC LL3_01614 IPR011010 DNA breaking-rejoining enzyme, catalytic core LL3_01614 IPR002104 Integrase, catalytic domain LL3_01614 IPR010998 Integrase/recombinase, N-terminal LL3_01614 IPR023009 Tyrosine recombinase XerC/XerD LL3_01614 IPR013762 Integrase-like, catalytic domain superfamily LL3_01638 IPR012338 Beta-lactamase/transpeptidase-like LL3_01638 IPR015868 Glutaminase LL3_01639 IPR009983 Uncharacterised protein family UPF0358 LL3_01639 IPR036270 UPF0358 superfamily LL3_01640 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site LL3_01640 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA LL3_01641 IPR016185 Pre-ATP-grasp domain superfamily LL3_01641 IPR000089 Biotin/lipoyl attachment LL3_01641 IPR000891 Pyruvate carboxyltransferase LL3_01641 IPR003379 Carboxylase, conserved domain LL3_01641 IPR011764 Biotin carboxylation domain LL3_01641 IPR011053 Single hybrid motif LL3_01641 IPR011054 Rudiment single hybrid motif LL3_01641 IPR005482 Biotin carboxylase, C-terminal LL3_01641 IPR011761 ATP-grasp fold LL3_01641 IPR005481 Biotin carboxylase-like, N-terminal domain LL3_01641 IPR005930 Pyruvate carboxylase LL3_01641 IPR013785 Aldolase-type TIM barrel LL3_01641 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain LL3_01642 IPR023755 Heme A synthase, type 1 LL3_01642 IPR003780 COX15/CtaA family LL3_01643 IPR006369 Protohaem IX farnesyltransferase LL3_01643 IPR030470 UbiA prenyltransferase conserved site LL3_01643 IPR000537 UbiA prenyltransferase family LL3_01645 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain LL3_01645 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily LL3_01645 IPR036909 Cytochrome c-like domain superfamily LL3_01645 IPR009056 Cytochrome c-like domain LL3_01645 IPR034236 Caa3-type Cytochrome c oxidase subunit II, cupredoxin domain LL3_01645 IPR008972 Cupredoxin LL3_01645 IPR001505 Copper centre Cu(A) LL3_01645 IPR002429 Cytochrome c oxidase subunit II-like C-terminal LL3_01645 IPR014222 Cytochrome c oxidase, subunit II LL3_01646 IPR023616 Cytochrome c oxidase-like, subunit I domain LL3_01646 IPR036927 Cytochrome c oxidase-like, subunit I superfamily LL3_01646 IPR000883 Cytochrome c oxidase subunit I LL3_01646 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site LL3_01646 IPR014241 Cytochrome c oxidase, subunit I bacterial type LL3_01647 IPR024791 Cytochrome c oxidase subunit III LL3_01647 IPR000298 Cytochrome c oxidase subunit III-like LL3_01647 IPR035973 Cytochrome c oxidase subunit III-like superfamily LL3_01647 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle LL3_01647 IPR033946 Ubiquinol oxidase subunit III domain LL3_01648 IPR014257 Cytochrome c oxidase, subunit IV bacillaceae LL3_01648 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes LL3_01649 IPR019108 Cytochrome c oxidase caa3-type, assembly factor CtaG-related LL3_01649 IPR014108 Cytochrome c oxidase caa3 type assembly factor CtaG LL3_01650 IPR014967 Uncharacterised protein family, YugN-like LL3_01650 IPR036491 YugN-like superfamily LL3_01651 IPR000644 CBS domain LL3_01652 IPR035940 CAP superfamily LL3_01652 IPR014044 CAP domain LL3_01652 IPR029410 CAP-associated domain LL3_01653 IPR025953 Putative coat protein YlbD LL3_01654 IPR025613 YlbE-like protein LL3_01655 IPR010368 Control of competence regulator ComK, YlbF/YmcA LL3_01655 IPR023378 YheA/YmcA-like domain superfamily LL3_01656 IPR016979 Protein of unknown function DUF2129 LL3_01658 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_01658 IPR004398 RNA methyltransferase, RsmD LL3_01659 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LL3_01659 IPR004821 Cytidyltransferase-like domain LL3_01659 IPR001980 Phosphopantetheine adenylyltransferase LL3_01660 IPR014226 Sporulation integral membrane protein YlbJ LL3_01660 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain LL3_01661 IPR002641 Patatin-like phospholipase domain LL3_01661 IPR001423 Lysophospholipase patatin, conserved site LL3_01661 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase LL3_01662 IPR027065 Lon protease LL3_01662 IPR008269 Peptidase S16, Lon proteolytic domain LL3_01662 IPR039381 Endopeptidase La, PDZ domain LL3_01662 IPR001478 PDZ domain LL3_01662 IPR036034 PDZ superfamily LL3_01662 IPR020568 Ribosomal protein S5 domain 2-type fold LL3_01662 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup LL3_01663 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LL3_01663 IPR008513 tRNA(Met) cytidine acetate ligase LL3_01664 IPR003772 Large ribosomal RNA subunit accumulation protein YceD LL3_01665 IPR002677 Ribosomal protein L32p LL3_01665 IPR011332 Zinc-binding ribosomal protein LL3_01666 IPR009057 Homeobox-like domain superfamily LL3_01666 IPR014243 Transcription factor, RsfA LL3_01666 IPR017930 Myb domain LL3_01667 IPR016181 Acyl-CoA N-acyltransferase LL3_01667 IPR000182 GNAT domain LL3_01667 IPR017274 Putative N-acetyltransferase YlbP LL3_01668 IPR036291 NAD(P)-binding domain superfamily LL3_01668 IPR013752 Ketopantoate reductase, C-terminal domain LL3_01668 IPR003710 Ketopantoate reductase ApbA/PanE LL3_01668 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily LL3_01668 IPR013332 Ketopantoate reductase, N-terminal domain LL3_01668 IPR013328 6-phosphogluconate dehydrogenase, domain 2 LL3_01669 IPR011199 Bacillithiol biosynthesis BshC LL3_01670 IPR003444 Transcriptional regulator MraZ LL3_01670 IPR035644 MraZ, C-terminal LL3_01670 IPR020603 MraZ domain LL3_01670 IPR035642 MraZ, N-terminal LL3_01670 IPR037914 SpoVT-AbrB domain superfamily LL3_01670 IPR038619 MraZ superfamily LL3_01670 IPR007159 SpoVT-AbrB domain LL3_01671 IPR002903 Ribosomal RNA small subunit methyltransferase H LL3_01671 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily LL3_01671 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_01672 IPR011922 Cell division protein FtsL LL3_01674 IPR001460 Penicillin-binding protein, transpeptidase LL3_01674 IPR011927 Stage V sporulation protein D LL3_01674 IPR005311 Penicillin-binding protein, dimerisation domain LL3_01674 IPR005543 PASTA domain LL3_01674 IPR036138 Penicillin-binding protein, dimerisation domain superfamily LL3_01674 IPR012338 Beta-lactamase/transpeptidase-like LL3_01675 IPR035911 MurE/MurF, N-terminal LL3_01675 IPR000713 Mur ligase, N-terminal catalytic domain LL3_01675 IPR036615 Mur ligase, C-terminal domain superfamily LL3_01675 IPR004101 Mur ligase, C-terminal LL3_01675 IPR013221 Mur ligase, central LL3_01675 IPR036565 Mur-like, catalytic domain superfamily LL3_01675 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase LL3_01676 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site LL3_01676 IPR000715 Glycosyl transferase, family 4 LL3_01676 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase LL3_01677 IPR013221 Mur ligase, central LL3_01677 IPR036615 Mur ligase, C-terminal domain superfamily LL3_01677 IPR036565 Mur-like, catalytic domain superfamily LL3_01677 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase LL3_01677 IPR004101 Mur ligase, C-terminal LL3_01678 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site LL3_01678 IPR013438 Sporulation stage V, protein E LL3_01678 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA LL3_01678 IPR013437 Probable peptidoglycan glycosyltransferase FtsW LL3_01679 IPR007235 Glycosyl transferase, family 28, C-terminal LL3_01679 IPR006009 N-acetylglucosaminyltransferase, MurG LL3_01679 IPR004276 Glycosyltransferase family 28, N-terminal domain LL3_01680 IPR016166 FAD-binding domain, PCMH-type LL3_01680 IPR006094 FAD linked oxidase, N-terminal LL3_01680 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily LL3_01680 IPR016167 FAD-binding, type PCMH, subdomain 1 LL3_01680 IPR036318 FAD-binding, type PCMH-like superfamily LL3_01680 IPR016169 FAD-binding, type PCMH, subdomain 2 LL3_01680 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal LL3_01680 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase LL3_01681 IPR026580 Cell division protein DivIB LL3_01681 IPR034746 POTRA domain LL3_01681 IPR013685 POTRA domain, FtsQ-type LL3_01683 IPR020823 Cell division protein FtsA LL3_01683 IPR003494 SHS2 domain inserted in FtsA LL3_01684 IPR037103 Tubulin/FtsZ, C-terminal domain superfamily LL3_01684 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain LL3_01684 IPR024757 Cell division protein FtsZ, C-terminal LL3_01684 IPR003008 Tubulin/FtsZ, GTPase domain LL3_01684 IPR036525 Tubulin/FtsZ, GTPase domain superfamily LL3_01684 IPR008280 Tubulin/FtsZ, C-terminal LL3_01684 IPR020805 Cell division protein FtsZ, conserved site LL3_01684 IPR000158 Cell division protein FtsZ LL3_01685 IPR015500 Peptidase S8, subtilisin-related LL3_01685 IPR010259 Peptidase S8 propeptide/proteinase inhibitor I9 LL3_01685 IPR012103 Peptidase S8A, bacillopeptidase F LL3_01685 IPR013783 Immunoglobulin-like fold LL3_01685 IPR033857 Bacillopeptidase F, peptidase domain LL3_01685 IPR008969 Carboxypeptidase-like, regulatory domain superfamily LL3_01685 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily LL3_01685 IPR036852 Peptidase S8/S53 domain superfamily LL3_01685 IPR022398 Peptidase S8, subtilisin, His-active site LL3_01685 IPR023828 Peptidase S8, subtilisin, Ser-active site LL3_01685 IPR000209 Peptidase S8/S53 domain LL3_01686 IPR005081 Sigma-E processing peptidase SpoIIGA LL3_01687 IPR014284 RNA polymerase sigma-70 like domain LL3_01687 IPR013324 RNA polymerase sigma factor, region 3/4-like LL3_01687 IPR013325 RNA polymerase sigma factor, region 2 LL3_01687 IPR007630 RNA polymerase sigma-70 region 4 LL3_01687 IPR007627 RNA polymerase sigma-70 region 2 LL3_01687 IPR000943 RNA polymerase sigma-70 LL3_01687 IPR014200 RNA polymerase sigma-E type LL3_01687 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_01688 IPR007630 RNA polymerase sigma-70 region 4 LL3_01688 IPR007624 RNA polymerase sigma-70 region 3 LL3_01688 IPR013324 RNA polymerase sigma factor, region 3/4-like LL3_01688 IPR000943 RNA polymerase sigma-70 LL3_01688 IPR014212 RNA polymerase sigma-G type LL3_01688 IPR014284 RNA polymerase sigma-70 like domain LL3_01688 IPR013325 RNA polymerase sigma factor, region 2 LL3_01688 IPR007627 RNA polymerase sigma-70 region 2 LL3_01688 IPR014322 RNA polymerase sigma-B/F/G type LL3_01690 IPR017871 ABC transporter, conserved site LL3_01690 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01690 IPR003439 ABC transporter-like LL3_01690 IPR003593 AAA+ ATPase domain LL3_01692 IPR011650 Peptidase M20, dimerisation domain LL3_01692 IPR010182 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase/Succinyl-diaminopimelate desuccinylase LL3_01692 IPR002933 Peptidase M20 LL3_01692 IPR036264 Bacterial exopeptidase dimerisation domain LL3_01693 IPR014238 Sporulation protein YlmC/YmxH LL3_01693 IPR011033 PRC-barrel-like superfamily LL3_01693 IPR027275 PRC-barrel domain LL3_01695 IPR011078 Pyridoxal phosphate homeostasis protein LL3_01695 IPR001608 Alanine racemase, N-terminal LL3_01695 IPR029066 PLP-binding barrel LL3_01696 IPR007561 Cell division protein SepF/SepF-related LL3_01696 IPR023052 Cell division protein SepF LL3_01696 IPR038594 SepF-like superfamily LL3_01698 IPR040591 YlmH, putative RNA-binding domain LL3_01698 IPR036986 RNA-binding S4 domain superfamily LL3_01698 IPR002942 RNA-binding S4 domain LL3_01698 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily LL3_01699 IPR019933 DivIVA domain LL3_01699 IPR007793 DivIVA family LL3_01700 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site LL3_01700 IPR002301 Isoleucine-tRNA ligase LL3_01700 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LL3_01700 IPR033708 Isoleucyl tRNA synthetase type 1, anticodon-binding domain LL3_01700 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding LL3_01700 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding LL3_01700 IPR023585 Isoleucine-tRNA ligase, type 1 LL3_01700 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain LL3_01700 IPR002300 Aminoacyl-tRNA synthetase, class Ia LL3_01701 IPR020458 Zinc finger, DksA/TraR C4-type conserved site LL3_01701 IPR000962 Zinc finger, DksA/TraR C4-type LL3_01701 IPR016841 Transcription regulator DksA-related, predicted LL3_01702 IPR001872 Peptidase A8, signal peptidase II LL3_01703 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site LL3_01703 IPR006225 Pseudouridine synthase, RluC/RluD LL3_01703 IPR020103 Pseudouridine synthase, catalytic domain superfamily LL3_01703 IPR002942 RNA-binding S4 domain LL3_01703 IPR006145 Pseudouridine synthase, RsuA/RluA LL3_01703 IPR036986 RNA-binding S4 domain superfamily LL3_01704 IPR029057 Phosphoribosyltransferase-like LL3_01704 IPR000836 Phosphoribosyltransferase domain LL3_01704 IPR023050 Bifunctional protein PyrR LL3_01706 IPR006042 Xanthine/uracil permease LL3_01706 IPR006043 Xanthine/uracil/vitamin C permease LL3_01706 IPR029935 Uracil permease LL3_01707 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain LL3_01707 IPR002082 Aspartate carbamoyltransferase LL3_01707 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily LL3_01707 IPR006130 Aspartate/ornithine carbamoyltransferase LL3_01707 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding LL3_01708 IPR002195 Dihydroorotase, conserved site LL3_01708 IPR004722 Dihydroorotase LL3_01708 IPR032466 Metal-dependent hydrolase LL3_01708 IPR006680 Amidohydrolase-related LL3_01708 IPR011059 Metal-dependent hydrolase, composite domain superfamily LL3_01709 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily LL3_01709 IPR029062 Class I glutamine amidotransferase-like LL3_01709 IPR035686 Carbamoyl-phosphate synthase small subunit, GATase1 domain LL3_01709 IPR017926 Glutamine amidotransferase LL3_01709 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain LL3_01709 IPR006274 Carbamoyl-phosphate synthase, small subunit LL3_01710 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily LL3_01710 IPR006275 Carbamoyl-phosphate synthase, large subunit LL3_01710 IPR036914 Methylglyoxal synthase-like domain superfamily LL3_01710 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain LL3_01710 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain LL3_01710 IPR011761 ATP-grasp fold LL3_01710 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain LL3_01710 IPR011607 Methylglyoxal synthase-like domain LL3_01710 IPR033937 Carbamoyl-phosphate synthase large chain, methylglyoxal synthase-like domain LL3_01710 IPR016185 Pre-ATP-grasp domain superfamily LL3_01711 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain LL3_01711 IPR023455 Dihydroorotate dehydrogenase electron transfer subunit LL3_01711 IPR017927 FAD-binding domain, ferredoxin reductase-type LL3_01711 IPR017938 Riboflavin synthase-like beta-barrel LL3_01711 IPR001433 Oxidoreductase FAD/NAD(P)-binding LL3_01711 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain LL3_01711 IPR012165 Cytochrome-c3 hydrogenase, gamma subunit LL3_01711 IPR037117 Dihydroorotate dehydrogenase, electron transfer subunit, Fe-S binding domain superfamily LL3_01712 IPR013785 Aldolase-type TIM barrel LL3_01712 IPR033888 Dihydroorotate dehydrogenase, class 1B LL3_01712 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 LL3_01712 IPR024920 Dihydroorotate dehydrogenase, class 1 LL3_01712 IPR001295 Dihydroorotate dehydrogenase, conserved site LL3_01712 IPR005720 Dihydroorotate dehydrogenase domain LL3_01713 IPR013785 Aldolase-type TIM barrel LL3_01713 IPR014732 Orotidine 5'-phosphate decarboxylase LL3_01713 IPR018089 Orotidine 5'-phosphate decarboxylase, active site LL3_01713 IPR001754 Orotidine 5'-phosphate decarboxylase domain LL3_01713 IPR011060 Ribulose-phosphate binding barrel LL3_01714 IPR000836 Phosphoribosyltransferase domain LL3_01714 IPR023031 Orotate phosphoribosyltransferase LL3_01714 IPR029057 Phosphoribosyltransferase-like LL3_01714 IPR004467 Orotate phosphoribosyl transferase domain LL3_01716 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LL3_01716 IPR002500 Phosphoadenosine phosphosulphate reductase LL3_01716 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase LL3_01716 IPR011798 Adenosine 5'-phosphosulphate reductase LL3_01717 IPR001204 Phosphate transporter LL3_01718 IPR015947 PUA-like superfamily LL3_01718 IPR002650 Sulphate adenylyltransferase LL3_01718 IPR024951 Sulphate adenylyltransferase catalytic domain LL3_01718 IPR020792 Sulphate adenylyltransferase, prokaryotic-type LL3_01718 IPR025980 ATP-sulfurylase PUA-like domain LL3_01718 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LL3_01719 IPR002891 Adenylyl-sulfate kinase LL3_01719 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01720 IPR006366 Uroporphyrin-III C-methyltransferase LL3_01720 IPR035996 Tetrapyrrole methylase superfamily LL3_01720 IPR014776 Tetrapyrrole methylase, subdomain 2 LL3_01720 IPR014777 Tetrapyrrole methylase, subdomain 1 LL3_01720 IPR000878 Tetrapyrrole methylase LL3_01720 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site LL3_01721 IPR002762 Cobalamin (vitamin B12) biosynthesis CbiX LL3_01722 IPR028161 Siroheme biosynthesis protein Met8 LL3_01722 IPR036291 NAD(P)-binding domain superfamily LL3_01722 IPR006367 Sirohaem synthase, N-terminal LL3_01723 IPR006047 Glycosyl hydrolase, family 13, catalytic domain LL3_01723 IPR013780 Glycosyl hydrolase, all-beta LL3_01723 IPR015237 Alpha-amylase C-terminal, prokaryotic LL3_01723 IPR013776 Alpha-amylase, thermostable LL3_01723 IPR017853 Glycoside hydrolase superfamily LL3_01725 IPR008250 P-type ATPase, A domain superfamily LL3_01725 IPR006068 Cation-transporting P-type ATPase, C-terminal LL3_01725 IPR018303 P-type ATPase, phosphorylation site LL3_01725 IPR004014 Cation-transporting P-type ATPase, N-terminal LL3_01725 IPR023298 P-type ATPase, transmembrane domain superfamily LL3_01725 IPR023299 P-type ATPase, cytoplasmic domain N LL3_01725 IPR036412 HAD-like superfamily LL3_01725 IPR023214 HAD superfamily LL3_01725 IPR001757 P-type ATPase LL3_01725 IPR005782 P-type ATPase, subfamily IIA, SERCA-type LL3_01726 IPR005229 Conserved hypothetical protein CHP00255 LL3_01726 IPR013527 YicC-like, N-terminal LL3_01726 IPR013551 Domain of unknown function DUF1732 LL3_01727 IPR007169 Extracellular matrix regulatory protein A LL3_01728 IPR008144 Guanylate kinase-like domain LL3_01728 IPR017665 Guanylate kinase LL3_01728 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01728 IPR020590 Guanylate kinase, conserved site LL3_01728 IPR008145 Guanylate kinase/L-type calcium channel beta subunit LL3_01729 IPR006110 RNA polymerase, subunit omega/K/RPB6 LL3_01729 IPR012293 RNA polymerase subunit, RPB6/omega LL3_01729 IPR036161 RPB6/omega subunit-like superfamily LL3_01729 IPR003716 DNA-directed RNA polymerase, omega subunit LL3_01730 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC LL3_01730 IPR003382 Flavoprotein LL3_01730 IPR036551 Flavin prenyltransferase-like LL3_01730 IPR035929 CoaB-like superfamily LL3_01730 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal LL3_01731 IPR040498 PriA DNA helicase, Cys-rich region (CRR) domain LL3_01731 IPR041222 Primosomal protein N', 3' DNA-binding domain LL3_01731 IPR041236 Primosomal protein N, C-terminal domain LL3_01731 IPR042115 Primosomal protein N', 3' DNA-binding domain superfamily LL3_01731 IPR005259 Primosomal protein N' LL3_01731 IPR006935 Helicase/UvrB, N-terminal LL3_01731 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01731 IPR001650 Helicase, C-terminal LL3_01731 IPR014001 Helicase superfamily 1/2, ATP-binding domain LL3_01732 IPR023635 Peptide deformylase LL3_01732 IPR036821 Peptide deformylase superfamily LL3_01733 IPR011034 Formyl transferase-like, C-terminal domain superfamily LL3_01733 IPR036477 Formyl transferase, N-terminal domain superfamily LL3_01733 IPR037022 Formyl transferase, C-terminal domain superfamily LL3_01733 IPR002376 Formyl transferase, N-terminal LL3_01733 IPR005794 Methionyl-tRNA formyltransferase LL3_01733 IPR001555 Phosphoribosylglycinamide formyltransferase, active site LL3_01733 IPR041711 Methionyl-tRNA formyltransferase, N-terminal domain LL3_01733 IPR005793 Formyl transferase, C-terminal LL3_01734 IPR006027 NusB/RsmB/TIM44 LL3_01734 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site LL3_01734 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type LL3_01734 IPR035926 NusB-like superfamily LL3_01734 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_01734 IPR004573 rRNA small subunit methyltransferase B LL3_01734 IPR023267 RNA (C5-cytosine) methyltransferase LL3_01735 IPR040072 Methyltransferase (Class A) LL3_01735 IPR013785 Aldolase-type TIM barrel LL3_01735 IPR007197 Radical SAM LL3_01735 IPR027492 Dual-specificity RNA methyltransferase RlmN LL3_01735 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr LL3_01736 IPR001932 PPM-type phosphatase domain LL3_01736 IPR015655 Protein phosphatase 2C family LL3_01736 IPR036457 PPM-type phosphatase domain superfamily LL3_01737 IPR008271 Serine/threonine-protein kinase, active site LL3_01737 IPR017441 Protein kinase, ATP binding site LL3_01737 IPR000719 Protein kinase domain LL3_01737 IPR005543 PASTA domain LL3_01737 IPR011009 Protein kinase-like domain superfamily LL3_01738 IPR004881 Ribosome biogenesis GTPase RsgA LL3_01738 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01738 IPR031944 Ribosome biogenesis GTPase RsgA, N-terminal LL3_01738 IPR010914 RsgA GTPase domain LL3_01738 IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain LL3_01738 IPR012340 Nucleic acid-binding, OB-fold LL3_01739 IPR011060 Ribulose-phosphate binding barrel LL3_01739 IPR000056 Ribulose-phosphate 3-epimerase-like LL3_01739 IPR013785 Aldolase-type TIM barrel LL3_01739 IPR026019 Ribulose-phosphate 3-epimerase LL3_01740 IPR036759 Thiamin pyrophosphokinase, catalytic domain superfamily LL3_01740 IPR007371 Thiamin pyrophosphokinase, catalytic domain LL3_01740 IPR036371 Thiamin pyrophosphokinase, thiamin-binding domain superfamily LL3_01740 IPR007373 Thiamin pyrophosphokinase, thiamin-binding domain LL3_01740 IPR006282 Thiamin pyrophosphokinase LL3_01741 IPR012609 Sporulation stage V, protein M LL3_01742 IPR037147 Ribosomal protein L28/L24 superfamily LL3_01742 IPR026569 Ribosomal protein L28/L24 LL3_01742 IPR001383 Ribosomal protein L28 LL3_01742 IPR034704 L28p-like LL3_01743 IPR005531 Alkaline shock protein Asp23 LL3_01744 IPR004007 DhaL domain LL3_01744 IPR033470 Uncharacterised protein, DhaK domain LL3_01744 IPR019986 DAK2 domain-containing protein YloV LL3_01744 IPR036117 DhaL domain superfamily LL3_01745 IPR005131 Serine dehydratase beta chain LL3_01745 IPR004643 Iron-sulphur-dependent L-serine dehydratase beta subunit LL3_01745 IPR029009 Allosteric substrate binding domain superfamily LL3_01745 IPR002912 ACT domain LL3_01746 IPR004642 Serine dehydratase, alpha subunit LL3_01746 IPR005130 Serine dehydratase-like, alpha subunit LL3_01747 IPR033454 RecG, wedge domain LL3_01747 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01747 IPR001650 Helicase, C-terminal LL3_01747 IPR014001 Helicase superfamily 1/2, ATP-binding domain LL3_01747 IPR011545 DEAD/DEAH box helicase domain LL3_01747 IPR004609 ATP-dependent DNA helicase RecG LL3_01747 IPR012340 Nucleic acid-binding, OB-fold LL3_01748 IPR017275 Transcription factor FapR LL3_01748 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_01748 IPR006683 Thioesterase domain LL3_01748 IPR029069 HotDog domain superfamily LL3_01749 IPR012281 Phospholipid biosynthesis protein, PlsX-like LL3_01749 IPR003664 Fatty acid synthesis PlsX protein LL3_01750 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type LL3_01750 IPR001227 Acyl transferase domain superfamily LL3_01750 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase LL3_01750 IPR024925 Malonyl CoA-acyl carrier protein transacylase LL3_01750 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding LL3_01750 IPR014043 Acyl transferase LL3_01751 IPR002347 Short-chain dehydrogenase/reductase SDR LL3_01751 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase LL3_01751 IPR036291 NAD(P)-binding domain superfamily LL3_01752 IPR003231 Acyl carrier protein (ACP) LL3_01752 IPR036736 ACP-like superfamily LL3_01752 IPR006162 Phosphopantetheine attachment site LL3_01752 IPR009081 Phosphopantetheine binding ACP domain LL3_01753 IPR011907 Ribonuclease III LL3_01753 IPR014720 Double-stranded RNA-binding domain LL3_01753 IPR000999 Ribonuclease III domain LL3_01753 IPR036389 Ribonuclease III, endonuclease domain superfamily LL3_01754 IPR003395 RecF/RecN/SMC, N-terminal LL3_01754 IPR011890 Structural maintenance of chromosomes protein, prokaryotic LL3_01754 IPR024704 Structural maintenance of chromosomes protein LL3_01754 IPR010935 SMCs flexible hinge LL3_01754 IPR036277 SMCs flexible hinge superfamily LL3_01754 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01755 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01755 IPR004390 Signal-recognition particle receptor FtsY LL3_01755 IPR013822 Signal recognition particle SRP54, helical bundle LL3_01755 IPR036225 SRP/SRP receptor, N-terminal LL3_01755 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain LL3_01755 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily LL3_01755 IPR003593 AAA+ ATPase domain LL3_01756 IPR013324 RNA polymerase sigma factor, region 3/4-like LL3_01756 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_01756 IPR007394 Putative helix-turn-helix protein, YlxM/p13-like LL3_01757 IPR013822 Signal recognition particle SRP54, helical bundle LL3_01757 IPR022941 Signal recognition particle, SRP54 subunit LL3_01757 IPR004780 Signal recognition particle protein LL3_01757 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily LL3_01757 IPR004125 Signal recognition particle, SRP54 subunit, M-domain LL3_01757 IPR003593 AAA+ ATPase domain LL3_01757 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain LL3_01757 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01757 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily LL3_01758 IPR023803 Ribosomal protein S16 domain superfamily LL3_01758 IPR020592 Ribosomal protein S16, conserved site LL3_01758 IPR000307 Ribosomal protein S16 LL3_01759 IPR020627 Uncharacterised protein family UPF0109 LL3_01759 IPR009019 K homology domain superfamily, prokaryotic type LL3_01759 IPR036612 K Homology domain, type 1 superfamily LL3_01760 IPR021297 YlqD protein LL3_01761 IPR036976 RimM, N-terminal domain superfamily LL3_01761 IPR009000 Translation protein, beta-barrel domain superfamily LL3_01761 IPR002676 RimM, N-terminal LL3_01761 IPR011033 PRC-barrel-like superfamily LL3_01761 IPR027275 PRC-barrel domain LL3_01761 IPR011961 16S rRNA processing protein RimM LL3_01762 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria LL3_01762 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal LL3_01762 IPR029028 Alpha/beta knot methyltransferases LL3_01762 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal LL3_01762 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain LL3_01764 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01764 IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain LL3_01764 IPR016478 GTPase, MTG1 LL3_01764 IPR023179 GTP-binding protein, orthogonal bundle domain superfamily LL3_01764 IPR019991 GTP-binding protein, ribosome biogenesis LL3_01764 IPR006073 GTP binding domain LL3_01765 IPR024567 Ribonuclease HII/HIII domain LL3_01765 IPR001352 Ribonuclease HII/HIII LL3_01765 IPR022898 Ribonuclease HII LL3_01765 IPR036397 Ribonuclease H superfamily LL3_01765 IPR012337 Ribonuclease H-like superfamily LL3_01767 IPR006135 Type III secretion system substrate exporter LL3_01767 IPR004683 Type III secretion system substrate exporter FlhB-like LL3_01767 IPR029025 Type III secretion system substrate exporter, C-terminal LL3_01768 IPR005809 Succinate--CoA synthetase, beta subunit LL3_01768 IPR016102 Succinyl-CoA synthetase-like LL3_01768 IPR011761 ATP-grasp fold LL3_01768 IPR005811 ATP-citrate lyase/succinyl-CoA ligase LL3_01768 IPR013815 ATP-grasp fold, subdomain 1 LL3_01768 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site LL3_01768 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type LL3_01769 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site LL3_01769 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site LL3_01769 IPR036291 NAD(P)-binding domain superfamily LL3_01769 IPR005811 ATP-citrate lyase/succinyl-CoA ligase LL3_01769 IPR003781 CoA-binding LL3_01769 IPR005810 Succinyl-CoA ligase, alpha subunit LL3_01769 IPR016102 Succinyl-CoA synthetase-like LL3_01770 IPR003488 DNA recombination-mediator protein A LL3_01771 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 LL3_01771 IPR005733 DNA topoisomerase I, bacterial-type LL3_01771 IPR013498 DNA topoisomerase, type IA, zn finger LL3_01771 IPR023405 DNA topoisomerase, type IA, core domain LL3_01771 IPR003602 DNA topoisomerase, type IA, DNA-binding domain LL3_01771 IPR028612 DNA topoisomerase I, type IA LL3_01771 IPR003601 DNA topoisomerase, type IA, domain 2 LL3_01771 IPR013497 DNA topoisomerase, type IA, central LL3_01771 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 LL3_01771 IPR000380 DNA topoisomerase, type IA LL3_01771 IPR006171 TOPRIM domain LL3_01771 IPR023406 DNA topoisomerase, type IA, active site LL3_01771 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 LL3_01771 IPR034149 DNA topoisomerase 1, TOPRIM domain LL3_01772 IPR036188 FAD/NAD(P)-binding domain superfamily LL3_01772 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related LL3_01772 IPR020595 MnmG-related, conserved site LL3_01772 IPR004417 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO LL3_01773 IPR011010 DNA breaking-rejoining enzyme, catalytic core LL3_01773 IPR013762 Integrase-like, catalytic domain superfamily LL3_01773 IPR002104 Integrase, catalytic domain LL3_01773 IPR010998 Integrase/recombinase, N-terminal LL3_01773 IPR004107 Integrase, SAM-like, N-terminal LL3_01773 IPR011931 Tyrosine recombinase XerC LL3_01773 IPR023009 Tyrosine recombinase XerC/XerD LL3_01774 IPR001353 Proteasome, subunit alpha/beta LL3_01774 IPR023333 Proteasome B-type subunit LL3_01774 IPR029055 Nucleophile aminohydrolases, N-terminal LL3_01774 IPR022281 ATP-dependent protease, HslV subunit LL3_01775 IPR019489 Clp ATPase, C-terminal LL3_01775 IPR003959 ATPase, AAA-type, core LL3_01775 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01775 IPR003593 AAA+ ATPase domain LL3_01775 IPR004491 Heat shock protein HslU LL3_01776 IPR014154 GTP-sensing transcriptional pleiotropic repressor CodY LL3_01776 IPR029016 GAF-like domain superfamily LL3_01776 IPR010312 GTP-sensing transcriptional pleiotropic repressor CodY, N-terminal LL3_01776 IPR013198 GTP-sensing helix-turn-helix, CodY, C-terminal LL3_01776 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_01776 IPR036390 Winged helix DNA-binding domain superfamily LL3_01777 IPR019776 Flagellar basal body rod protein, conserved site LL3_01777 IPR006300 Flagellar basal-body rod protein FlgB LL3_01777 IPR001444 Flagellar basal body rod protein, N-terminal LL3_01778 IPR010930 Flagellar basal-body/hook protein, C-terminal domain LL3_01778 IPR006299 Flagellar basal-body rod protein FlgC LL3_01778 IPR019776 Flagellar basal body rod protein, conserved site LL3_01778 IPR001444 Flagellar basal body rod protein, N-terminal LL3_01779 IPR001624 Flagellar hook-basal body complex protein FliE LL3_01780 IPR013556 Flagellar M-ring C-terminal LL3_01780 IPR006182 Secretory protein YscJ/FliF LL3_01780 IPR000067 Flagellar M-ring protein FliF LL3_01781 IPR028263 Flagellar motor switch protein FliG, N-terminal domain LL3_01781 IPR011002 Flagellar motor switch protein FliG, alpha-helical LL3_01781 IPR023087 Flagellar motor switch protein FliG, C-terminal LL3_01781 IPR000090 Flagellar motor switch protein FliG LL3_01781 IPR032779 Flagellar motor switch protein FliG, middle domain LL3_01782 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE LL3_01782 IPR022524 Flagellar assembly FliH, Bacilli LL3_01783 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site LL3_01783 IPR000225 Armadillo LL3_01783 IPR003593 AAA+ ATPase domain LL3_01783 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain LL3_01783 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain LL3_01783 IPR040627 T3SS EscN ATPase, C-terminal LL3_01783 IPR032463 ATPase, type III secretion system, FliI LL3_01783 IPR005714 ATPase, type III secretion system, FliI/YscN LL3_01783 IPR022425 Flagellar export ATPase FliI, clade 2 LL3_01783 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01784 IPR012823 Flagellar export FliJ LL3_01785 IPR006668 Magnesium transporter, MgtE intracellular domain LL3_01785 IPR038076 MgtE, N-terminal domain superfamily LL3_01786 IPR001635 Flagellar hook-length control protein FliK LL3_01786 IPR038610 FliK-like, C-terminal domain superfamily LL3_01786 IPR021136 Flagellar hook-length control protein-like, C-terminal LL3_01787 IPR005648 Flagellar hook capping protein LL3_01788 IPR001444 Flagellar basal body rod protein, N-terminal LL3_01788 IPR019776 Flagellar basal body rod protein, conserved site LL3_01788 IPR020013 Flagellar hook-basal body protein, FlgE/F/G LL3_01788 IPR010930 Flagellar basal-body/hook protein, C-terminal domain LL3_01788 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like LL3_01788 IPR012836 Flagellar basal-body rod FlgF LL3_01789 IPR009384 Swarming motility protein SwrD-like LL3_01790 IPR005503 Flagellar basal body-associated protein FliL LL3_01791 IPR028976 CheC-like superfamily LL3_01791 IPR036429 SpoA-like superfamily LL3_01791 IPR001543 Surface presentation of antigen (SpoA) LL3_01791 IPR001689 Flagellar motor switch protein FliM LL3_01792 IPR012826 Flagellar motor switch FliN LL3_01792 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb LL3_01792 IPR001543 Surface presentation of antigen (SpoA) LL3_01792 IPR036429 SpoA-like superfamily LL3_01792 IPR028976 CheC-like superfamily LL3_01792 IPR007597 CheC-like protein LL3_01793 IPR001789 Signal transduction response regulator, receiver domain LL3_01793 IPR011006 CheY-like superfamily LL3_01794 IPR022781 Flagellar biosynthesis protein, FliO LL3_01795 IPR005837 Flagellar transport protein FliP LL3_01795 IPR005838 Type III secretion system inner membrane P protein LL3_01796 IPR006305 Flagellar biosynthesis protein FliQ LL3_01796 IPR002191 Bacterial export protein family 3 LL3_01797 IPR002010 Type III secretion system inner membrane R protein LL3_01797 IPR006303 Flagellar biosynthesis protein FliR LL3_01798 IPR006136 Flagellar biosynthetic protein FlhB LL3_01798 IPR006135 Type III secretion system substrate exporter LL3_01798 IPR029025 Type III secretion system substrate exporter, C-terminal LL3_01799 IPR001712 Type III secretion system FHIPEP LL3_01799 IPR006301 Flagellar biosynthesis protein FlhA LL3_01799 IPR025505 FHIPEP conserved site LL3_01799 IPR042196 FHIPEP, domain 4 LL3_01799 IPR042193 FHIPEP, domain 3 LL3_01799 IPR042194 FHIPEP, domain 1 LL3_01800 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain LL3_01800 IPR020006 Flagellar biosynthesis protein FlhF LL3_01800 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01801 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 LL3_01801 IPR025501 ATP binding protein MinD LL3_01801 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01802 IPR011006 CheY-like superfamily LL3_01802 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase LL3_01802 IPR001789 Signal transduction response regulator, receiver domain LL3_01802 IPR035909 Methylesterase CheB, C-terminal LL3_01802 IPR008248 Protein-glutamate methylesterase/protein-glutamine glutaminase, CheB type LL3_01803 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily LL3_01803 IPR010808 Chemotaxis protein CheA, P2 response regulator-binding LL3_01803 IPR036061 CheW-like domain superfamily LL3_01803 IPR002545 CheW-like domain LL3_01803 IPR035891 CheY-binding domain of CheA LL3_01803 IPR037052 Chemotaxis protein CheA, P2 response regulator-binding domain superfamily LL3_01803 IPR003594 Histidine kinase/HSP90-like ATPase LL3_01803 IPR004105 Histidine kinase CheA-like, homodimeric domain LL3_01803 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_01803 IPR005467 Histidine kinase domain LL3_01803 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LL3_01803 IPR036641 HPT domain superfamily LL3_01803 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LL3_01803 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain LL3_01804 IPR039315 Chemotaxis protein CheW LL3_01804 IPR036061 CheW-like domain superfamily LL3_01804 IPR002545 CheW-like domain LL3_01805 IPR028976 CheC-like superfamily LL3_01805 IPR007597 CheC-like protein LL3_01806 IPR011324 Cytotoxic necrotizing factor-like, catalytic LL3_01806 IPR005659 Chemoreceptor glutamine deamidase CheD LL3_01806 IPR038592 CheD-like superfamily LL3_01807 IPR000943 RNA polymerase sigma-70 LL3_01807 IPR014284 RNA polymerase sigma-70 like domain LL3_01807 IPR007624 RNA polymerase sigma-70 region 3 LL3_01807 IPR013324 RNA polymerase sigma factor, region 3/4-like LL3_01807 IPR013325 RNA polymerase sigma factor, region 2 LL3_01807 IPR007627 RNA polymerase sigma-70 region 2 LL3_01807 IPR012845 RNA polymerase sigma factor, FliA/WhiG LL3_01807 IPR007630 RNA polymerase sigma-70 region 4 LL3_01809 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily LL3_01809 IPR018130 Ribosomal protein S2, conserved site LL3_01809 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid LL3_01809 IPR001865 Ribosomal protein S2 LL3_01810 IPR001816 Translation elongation factor EFTs/EF1B LL3_01810 IPR018101 Translation elongation factor Ts, conserved site LL3_01810 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation LL3_01810 IPR036402 Elongation factor Ts, dimerisation domain superfamily LL3_01810 IPR009060 UBA-like superfamily LL3_01811 IPR011817 Uridylate kinase LL3_01811 IPR001048 Aspartate/glutamate/uridylate kinase LL3_01811 IPR036393 Acetylglutamate kinase-like superfamily LL3_01811 IPR015963 Uridylate kinase, bacteria LL3_01812 IPR036191 RRF superfamily LL3_01812 IPR023584 Ribosome recycling factor domain LL3_01812 IPR002661 Ribosome recycling factor LL3_01813 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site LL3_01813 IPR001441 Decaprenyl diphosphate synthase-like LL3_01813 IPR036424 Decaprenyl diphosphate synthase-like superfamily LL3_01814 IPR000374 Phosphatidate cytidylyltransferase LL3_01815 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal LL3_01815 IPR036291 NAD(P)-binding domain superfamily LL3_01815 IPR036169 DXP reductoisomerase, C-terminal domain superfamily LL3_01815 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase LL3_01815 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal LL3_01815 IPR026877 DXP reductoisomerase C-terminal domain LL3_01816 IPR008915 Peptidase M50 LL3_01816 IPR041489 PDZ domain 6 LL3_01816 IPR001478 PDZ domain LL3_01816 IPR036034 PDZ superfamily LL3_01816 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase LL3_01817 IPR036621 Anticodon-binding domain superfamily LL3_01817 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 LL3_01817 IPR004154 Anticodon-binding LL3_01817 IPR033730 Prokaryote proline-tRNA ligase core domain LL3_01817 IPR002316 Proline-tRNA ligase, class IIa LL3_01817 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type LL3_01817 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain LL3_01817 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) LL3_01817 IPR006195 Aminoacyl-tRNA synthetase, class II LL3_01817 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily LL3_01818 IPR036397 Ribonuclease H superfamily LL3_01818 IPR040982 DNA polymerase III alpha subunit finger domain LL3_01818 IPR024754 DNA polymerase III polC-like, N-terminal domain II LL3_01818 IPR012337 Ribonuclease H-like superfamily LL3_01818 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain LL3_01818 IPR029460 DNA polymerase, helix-hairpin-helix motif LL3_01818 IPR028112 DNA polymerase III polC-type, N-terminal domain I LL3_01818 IPR013520 Exonuclease, RNase T/DNA polymerase III LL3_01818 IPR012340 Nucleic acid-binding, OB-fold LL3_01818 IPR004013 PHP domain LL3_01818 IPR003141 Polymerase/histidinol phosphatase, N-terminal LL3_01818 IPR006308 DNA polymerase III, alpha subunit, Gram-positive type LL3_01818 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain LL3_01819 IPR003728 Ribosome maturation factor RimP LL3_01819 IPR028998 Ribosome maturation factor RimP, C-terminal LL3_01819 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily LL3_01819 IPR028989 Ribosome maturation factor RimP, N-terminal LL3_01819 IPR035956 RimP, N-terminal domain superfamily LL3_01820 IPR009019 K homology domain superfamily, prokaryotic type LL3_01820 IPR012340 Nucleic acid-binding, OB-fold LL3_01820 IPR025249 KH domain, NusA-like LL3_01820 IPR010213 Transcription termination factor NusA LL3_01820 IPR036555 NusA, N-terminal domain superfamily LL3_01820 IPR003029 S1 domain LL3_01820 IPR013735 Transcription factor NusA, N-terminal LL3_01820 IPR030842 Transcription termination/antitermination protein NusA, bacterial LL3_01820 IPR022967 RNA-binding domain, S1 LL3_01820 IPR015946 K homology domain-like, alpha/beta LL3_01820 IPR004087 K Homology domain LL3_01821 IPR007393 Domain of unknown function DUF448 LL3_01821 IPR037465 Uncharacterized protein YlxR LL3_01821 IPR035931 YlxR-like superfamily LL3_01822 IPR039107 Ribosomal protein YlxQ LL3_01822 IPR004037 Ribosomal protein L7Ae conserved site LL3_01822 IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 LL3_01822 IPR029064 50S ribosomal protein L30e-like LL3_01822 IPR039109 Ribosomal protein L30/YlxQ LL3_01823 IPR005225 Small GTP-binding protein domain LL3_01823 IPR023115 Translation initiation factor IF- 2, domain 3 LL3_01823 IPR015760 Translation initiation factor IF- 2 LL3_01823 IPR000178 Translation initiation factor aIF-2, bacterial-like LL3_01823 IPR009000 Translation protein, beta-barrel domain superfamily LL3_01823 IPR000795 Transcription factor, GTP-binding domain LL3_01823 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01823 IPR036925 Translation initiation factor IF-2, domain 3 superfamily LL3_01823 IPR006847 Translation initiation factor IF-2, N-terminal LL3_01824 IPR007546 Protein of unknown function DUF503 LL3_01824 IPR036746 TT1725-like superfamily LL3_01825 IPR023799 Ribosome-binding factor A domain superfamily LL3_01825 IPR020053 Ribosome-binding factor A, conserved site LL3_01825 IPR000238 Ribosome-binding factor A LL3_01825 IPR015946 K homology domain-like, alpha/beta LL3_01826 IPR014780 tRNA pseudouridine synthase II, TruB LL3_01826 IPR032819 tRNA pseudouridylate synthase B, C-terminal LL3_01826 IPR002501 Pseudouridine synthase II, N-terminal LL3_01826 IPR020103 Pseudouridine synthase, catalytic domain superfamily LL3_01827 IPR004821 Cytidyltransferase-like domain LL3_01827 IPR023465 Riboflavin kinase domain superfamily LL3_01827 IPR023468 Riboflavin kinase LL3_01827 IPR015864 FAD synthetase LL3_01827 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LL3_01827 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic LL3_01827 IPR002606 Riboflavin kinase, bacterial LL3_01828 IPR001247 Exoribonuclease, phosphorolytic domain 1 LL3_01828 IPR003029 S1 domain LL3_01828 IPR022967 RNA-binding domain, S1 LL3_01828 IPR015847 Exoribonuclease, phosphorolytic domain 2 LL3_01828 IPR004087 K Homology domain LL3_01828 IPR020568 Ribosomal protein S5 domain 2-type fold LL3_01828 IPR004088 K Homology domain, type 1 LL3_01828 IPR036612 K Homology domain, type 1 superfamily LL3_01828 IPR012340 Nucleic acid-binding, OB-fold LL3_01828 IPR012162 Polyribonucleotide nucleotidyltransferase LL3_01828 IPR027408 PNPase/RNase PH domain superfamily LL3_01828 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain LL3_01828 IPR036345 Exoribonuclease, PH domain 2 superfamily LL3_01829 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel LL3_01829 IPR002509 NodB homology domain LL3_01829 IPR014228 Sporulation protein, polysaccharide deacetylase, YlxY LL3_01829 IPR010916 TonB box, conserved site LL3_01830 IPR007863 Peptidase M16, C-terminal LL3_01830 IPR001431 Peptidase M16, zinc-binding site LL3_01830 IPR011765 Peptidase M16, N-terminal LL3_01830 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like LL3_01831 IPR027275 PRC-barrel domain LL3_01831 IPR014238 Sporulation protein YlmC/YmxH LL3_01831 IPR011033 PRC-barrel-like superfamily LL3_01832 IPR031629 Dipicolinate synthase subunit A, N-terminal LL3_01832 IPR014215 Dipicolinic acid synthetase subunit A LL3_01832 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain LL3_01832 IPR036291 NAD(P)-binding domain superfamily LL3_01833 IPR036551 Flavin prenyltransferase-like LL3_01833 IPR003382 Flavoprotein LL3_01833 IPR014214 Dipicolinic acid synthetase, subunit B LL3_01834 IPR012280 Semialdehyde dehydrogenase, dimerisation domain LL3_01834 IPR036291 NAD(P)-binding domain superfamily LL3_01834 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type LL3_01834 IPR012080 Aspartate-semialdehyde dehydrogenase LL3_01834 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site LL3_01834 IPR000534 Semialdehyde dehydrogenase, NAD-binding LL3_01835 IPR018042 Aspartate kinase, conserved site LL3_01835 IPR001048 Aspartate/glutamate/uridylate kinase LL3_01835 IPR027795 CASTOR, ACT domain LL3_01835 IPR002912 ACT domain LL3_01835 IPR001341 Aspartate kinase LL3_01835 IPR005260 Aspartate kinase, monofunctional class LL3_01835 IPR036393 Acetylglutamate kinase-like superfamily LL3_01836 IPR013785 Aldolase-type TIM barrel LL3_01836 IPR020624 Schiff base-forming aldolase, conserved site LL3_01836 IPR020625 Schiff base-forming aldolase, active site LL3_01836 IPR002220 DapA-like LL3_01836 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA LL3_01837 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain LL3_01837 IPR004613 Ribonuclease J LL3_01837 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like LL3_01837 IPR030854 Ribonuclease J, bacteria LL3_01837 IPR041636 Ribonuclease J, C-terminal LL3_01837 IPR042173 Ribonuclease J, domain 2 LL3_01837 IPR001279 Metallo-beta-lactamase LL3_01838 IPR029045 ClpP/crotonase-like domain superfamily LL3_01838 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA LL3_01839 IPR025619 YlzJ-like protein LL3_01840 IPR018541 FtsK gamma domain LL3_01840 IPR003593 AAA+ ATPase domain LL3_01840 IPR036390 Winged helix DNA-binding domain superfamily LL3_01840 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01840 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_01840 IPR041027 FtsK alpha domain LL3_01840 IPR002543 FtsK domain LL3_01841 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_01841 IPR036390 Winged helix DNA-binding domain superfamily LL3_01841 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily LL3_01841 IPR000524 Transcription regulator HTH, GntR LL3_01841 IPR011663 UbiC transcription regulator-associated LL3_01842 IPR036259 MFS transporter superfamily LL3_01842 IPR011701 Major facilitator superfamily LL3_01842 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG LL3_01842 IPR020846 Major facilitator superfamily domain LL3_01843 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_01843 IPR000835 MarR-type HTH domain LL3_01843 IPR036390 Winged helix DNA-binding domain superfamily LL3_01844 IPR000731 Sterol-sensing domain LL3_01844 IPR004869 Membrane transport protein MMPL domain LL3_01845 IPR007863 Peptidase M16, C-terminal LL3_01845 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like LL3_01846 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like LL3_01846 IPR007863 Peptidase M16, C-terminal LL3_01846 IPR011765 Peptidase M16, N-terminal LL3_01847 IPR036291 NAD(P)-binding domain superfamily LL3_01847 IPR002347 Short-chain dehydrogenase/reductase SDR LL3_01848 IPR021637 Protein of unknown function DUF3243 LL3_01848 IPR038292 YmfJ/YflH superfamily LL3_01848 IPR024702 Uncharacterised conserved protein YmfJ LL3_01849 IPR016784 Uncharacterised protein UCP021288 with ACT domain LL3_01849 IPR002912 ACT domain LL3_01849 IPR024514 Domain of unknown function DUF3388 LL3_01850 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LL3_01850 IPR025194 Domain of unknown function DUF4115 LL3_01851 IPR000462 CDP-alcohol phosphatidyltransferase LL3_01851 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase LL3_01852 IPR008135 Competence-induced protein CinA LL3_01852 IPR036653 CinA-like, C-terminal LL3_01852 IPR008136 CinA, C-terminal LL3_01852 IPR001453 MoaB/Mog domain LL3_01852 IPR036425 MoaB/Mog-like domain superfamily LL3_01852 IPR041424 CinA, KH domain LL3_01853 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01853 IPR023400 DNA recombination and repair protein RecA, C-terminal LL3_01853 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain LL3_01853 IPR020584 DNA recombination/repair protein RecA, conserved site LL3_01853 IPR020587 DNA recombination and repair protein RecA, monomer-monomer interface LL3_01853 IPR013765 DNA recombination and repair protein RecA LL3_01853 IPR003593 AAA+ ATPase domain LL3_01854 IPR001466 Beta-lactamase-related LL3_01854 IPR012338 Beta-lactamase/transpeptidase-like LL3_01855 IPR004088 K Homology domain, type 1 LL3_01855 IPR003607 HD/PDEase domain LL3_01855 IPR036612 K Homology domain, type 1 superfamily LL3_01855 IPR017705 Ribonuclease Y LL3_01855 IPR022711 Ribonuclease Y, N-terminal LL3_01855 IPR006674 HD domain LL3_01855 IPR004087 K Homology domain LL3_01855 IPR006675 HDIG domain LL3_01856 IPR005235 Metallophosphoesterase, YmdB-like LL3_01856 IPR029052 Metallo-dependent phosphatase-like LL3_01857 IPR007347 Sporulation stage V, protein S LL3_01857 IPR036882 Alba-like domain superfamily LL3_01858 IPR020843 Polyketide synthase, enoylreductase domain LL3_01858 IPR036291 NAD(P)-binding domain superfamily LL3_01858 IPR013154 Alcohol dehydrogenase, N-terminal LL3_01858 IPR004627 L-threonine 3-dehydrogenase LL3_01858 IPR011032 GroES-like superfamily LL3_01858 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site LL3_01858 IPR013149 Alcohol dehydrogenase, C-terminal LL3_01859 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type LL3_01859 IPR015424 Pyridoxal phosphate-dependent transferase LL3_01859 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site LL3_01859 IPR004839 Aminotransferase, class I/classII LL3_01859 IPR010962 Putative 8-amino-7-oxononanoate synthase, Archaea/Firmicutes type LL3_01859 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_01859 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_01860 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB LL3_01860 IPR020612 Methylthiotransferase, conserved site LL3_01860 IPR013848 Methylthiotransferase, N-terminal LL3_01860 IPR005839 Methylthiotransferase LL3_01860 IPR006638 Elp3/MiaB/NifB LL3_01860 IPR002792 TRAM domain LL3_01860 IPR023404 Radical SAM, alpha/beta horseshoe LL3_01860 IPR007197 Radical SAM LL3_01860 IPR038135 Methylthiotransferase, N-terminal domain superfamily LL3_01861 IPR010368 Control of competence regulator ComK, YlbF/YmcA LL3_01861 IPR023378 YheA/YmcA-like domain superfamily LL3_01861 IPR016783 Biofilm formation YmcA LL3_01862 IPR018901 Spore coat protein CotE LL3_01863 IPR005748 DNA mismatch repair protein MutS LL3_01863 IPR007695 DNA mismatch repair protein MutS-like, N-terminal LL3_01863 IPR017261 DNA mismatch repair protein MutS/MSH LL3_01863 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01863 IPR036678 MutS, connector domain superfamily LL3_01863 IPR007860 DNA mismatch repair protein MutS, connector domain LL3_01863 IPR036187 DNA mismatch repair protein MutS, core domain superfamily LL3_01863 IPR016151 DNA mismatch repair protein MutS, N-terminal LL3_01863 IPR007696 DNA mismatch repair protein MutS, core LL3_01863 IPR000432 DNA mismatch repair protein MutS, C-terminal LL3_01863 IPR007861 DNA mismatch repair protein MutS, clamp LL3_01864 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_01864 IPR042121 MutL, C-terminal domain, regulatory subdomain LL3_01864 IPR038973 DNA mismatch repair protein MutL/Mlh/Pms LL3_01864 IPR014790 MutL, C-terminal, dimerisation LL3_01864 IPR013507 DNA mismatch repair protein, S5 domain 2-like LL3_01864 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup LL3_01864 IPR020568 Ribosomal protein S5 domain 2-type fold LL3_01864 IPR042120 MutL, C-terminal domain, dimerisation subdomain LL3_01864 IPR002099 DNA mismatch repair protein family, N-terminal LL3_01864 IPR014762 DNA mismatch repair, conserved site LL3_01864 IPR020667 DNA mismatch repair protein, MutL LL3_01864 IPR037198 MutL, C-terminal domain superfamily LL3_01865 IPR001279 Metallo-beta-lactamase LL3_01865 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like LL3_01866 IPR024925 Malonyl CoA-acyl carrier protein transacylase LL3_01866 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase LL3_01866 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type LL3_01866 IPR001227 Acyl transferase domain superfamily LL3_01866 IPR014043 Acyl transferase LL3_01866 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding LL3_01867 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase LL3_01867 IPR014043 Acyl transferase LL3_01867 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding LL3_01867 IPR001227 Acyl transferase domain superfamily LL3_01868 IPR014179 PfaD family protein LL3_01868 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding LL3_01868 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type LL3_01868 IPR013785 Aldolase-type TIM barrel LL3_01868 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase LL3_01868 IPR001227 Acyl transferase domain superfamily LL3_01868 IPR014043 Acyl transferase LL3_01869 IPR009081 Phosphopantetheine binding ACP domain LL3_01869 IPR036736 ACP-like superfamily LL3_01870 IPR016039 Thiolase-like LL3_01870 IPR013528 Hydroxymethylglutaryl-coenzyme A synthase, N-terminal LL3_01870 IPR013746 Hydroxymethylglutaryl-coenzyme A synthase C-terminal domain LL3_01871 IPR001753 Enoyl-CoA hydratase/isomerase LL3_01871 IPR029045 ClpP/crotonase-like domain superfamily LL3_01871 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site LL3_01872 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site LL3_01872 IPR029045 ClpP/crotonase-like domain superfamily LL3_01872 IPR001753 Enoyl-CoA hydratase/isomerase LL3_01873 IPR014031 Beta-ketoacyl synthase, C-terminal LL3_01873 IPR042099 AMP-dependent synthetase-like superfamily LL3_01873 IPR025110 AMP-binding enzyme, C-terminal domain LL3_01873 IPR000873 AMP-dependent synthetase/ligase LL3_01873 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily LL3_01873 IPR018201 Beta-ketoacyl synthase, active site LL3_01873 IPR014030 Beta-ketoacyl synthase, N-terminal LL3_01873 IPR001242 Condensation domain LL3_01873 IPR020845 AMP-binding, conserved site LL3_01873 IPR036291 NAD(P)-binding domain superfamily LL3_01873 IPR020806 Polyketide synthase, phosphopantetheine-binding domain LL3_01873 IPR032821 Ketoacyl-synthetase, C-terminal extension LL3_01873 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain LL3_01873 IPR013968 Polyketide synthase, ketoreductase domain LL3_01873 IPR042104 Polyketide synthase, dehydratase domain superfamily LL3_01873 IPR020807 Polyketide synthase, dehydratase domain LL3_01873 IPR006162 Phosphopantetheine attachment site LL3_01873 IPR016039 Thiolase-like LL3_01873 IPR036736 ACP-like superfamily LL3_01873 IPR010071 Amino acid adenylation domain LL3_01873 IPR009081 Phosphopantetheine binding ACP domain LL3_01874 IPR018201 Beta-ketoacyl synthase, active site LL3_01874 IPR042104 Polyketide synthase, dehydratase domain superfamily LL3_01874 IPR020807 Polyketide synthase, dehydratase domain LL3_01874 IPR013968 Polyketide synthase, ketoreductase domain LL3_01874 IPR036736 ACP-like superfamily LL3_01874 IPR014031 Beta-ketoacyl synthase, C-terminal LL3_01874 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain LL3_01874 IPR016039 Thiolase-like LL3_01874 IPR011254 Prismane-like superfamily LL3_01874 IPR036291 NAD(P)-binding domain superfamily LL3_01874 IPR020806 Polyketide synthase, phosphopantetheine-binding domain LL3_01874 IPR009081 Phosphopantetheine binding ACP domain LL3_01874 IPR032821 Ketoacyl-synthetase, C-terminal extension LL3_01874 IPR014030 Beta-ketoacyl synthase, N-terminal LL3_01874 IPR006162 Phosphopantetheine attachment site LL3_01875 IPR014030 Beta-ketoacyl synthase, N-terminal LL3_01875 IPR013217 Methyltransferase type 12 LL3_01875 IPR036291 NAD(P)-binding domain superfamily LL3_01875 IPR014031 Beta-ketoacyl synthase, C-terminal LL3_01875 IPR036736 ACP-like superfamily LL3_01875 IPR018201 Beta-ketoacyl synthase, active site LL3_01875 IPR032821 Ketoacyl-synthetase, C-terminal extension LL3_01875 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain LL3_01875 IPR020807 Polyketide synthase, dehydratase domain LL3_01875 IPR042104 Polyketide synthase, dehydratase domain superfamily LL3_01875 IPR020806 Polyketide synthase, phosphopantetheine-binding domain LL3_01875 IPR020806 Polyketide synthase, phosphopantetheine-binding domain LL3_01875 IPR009081 Phosphopantetheine binding ACP domain LL3_01875 IPR006162 Phosphopantetheine attachment site LL3_01875 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain LL3_01875 IPR032821 Ketoacyl-synthetase, C-terminal extension LL3_01875 IPR036291 NAD(P)-binding domain superfamily LL3_01875 IPR013217 Methyltransferase type 12 LL3_01875 IPR020807 Polyketide synthase, dehydratase domain LL3_01875 IPR014030 Beta-ketoacyl synthase, N-terminal LL3_01875 IPR042104 Polyketide synthase, dehydratase domain superfamily LL3_01875 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_01875 IPR016039 Thiolase-like LL3_01875 IPR014031 Beta-ketoacyl synthase, C-terminal LL3_01875 IPR018201 Beta-ketoacyl synthase, active site LL3_01875 IPR036736 ACP-like superfamily LL3_01875 IPR020615 Thiolase, acyl-enzyme intermediate active site LL3_01875 IPR020615 Thiolase, acyl-enzyme intermediate active site LL3_01875 IPR016039 Thiolase-like LL3_01875 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_01875 IPR006162 Phosphopantetheine attachment site LL3_01875 IPR009081 Phosphopantetheine binding ACP domain LL3_01875 IPR013968 Polyketide synthase, ketoreductase domain LL3_01875 IPR013968 Polyketide synthase, ketoreductase domain LL3_01876 IPR013968 Polyketide synthase, ketoreductase domain LL3_01876 IPR036736 ACP-like superfamily LL3_01876 IPR042104 Polyketide synthase, dehydratase domain superfamily LL3_01876 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain LL3_01876 IPR032821 Ketoacyl-synthetase, C-terminal extension LL3_01876 IPR036291 NAD(P)-binding domain superfamily LL3_01876 IPR016039 Thiolase-like LL3_01876 IPR020806 Polyketide synthase, phosphopantetheine-binding domain LL3_01876 IPR009081 Phosphopantetheine binding ACP domain LL3_01876 IPR010071 Amino acid adenylation domain LL3_01876 IPR006162 Phosphopantetheine attachment site LL3_01876 IPR014031 Beta-ketoacyl synthase, C-terminal LL3_01876 IPR018201 Beta-ketoacyl synthase, active site LL3_01876 IPR001242 Condensation domain LL3_01876 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily LL3_01876 IPR042099 AMP-dependent synthetase-like superfamily LL3_01876 IPR000873 AMP-dependent synthetase/ligase LL3_01876 IPR020845 AMP-binding, conserved site LL3_01876 IPR025110 AMP-binding enzyme, C-terminal domain LL3_01876 IPR014030 Beta-ketoacyl synthase, N-terminal LL3_01876 IPR020807 Polyketide synthase, dehydratase domain LL3_01877 IPR016039 Thiolase-like LL3_01877 IPR009081 Phosphopantetheine binding ACP domain LL3_01877 IPR020615 Thiolase, acyl-enzyme intermediate active site LL3_01877 IPR014030 Beta-ketoacyl synthase, N-terminal LL3_01877 IPR013217 Methyltransferase type 12 LL3_01877 IPR032821 Ketoacyl-synthetase, C-terminal extension LL3_01877 IPR020806 Polyketide synthase, phosphopantetheine-binding domain LL3_01877 IPR029058 Alpha/Beta hydrolase fold LL3_01877 IPR006162 Phosphopantetheine attachment site LL3_01877 IPR042104 Polyketide synthase, dehydratase domain superfamily LL3_01877 IPR018201 Beta-ketoacyl synthase, active site LL3_01877 IPR014031 Beta-ketoacyl synthase, C-terminal LL3_01877 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_01877 IPR001031 Thioesterase LL3_01877 IPR020807 Polyketide synthase, dehydratase domain LL3_01877 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain LL3_01877 IPR036736 ACP-like superfamily LL3_01878 IPR001128 Cytochrome P450 LL3_01878 IPR002397 Cytochrome P450, B-class LL3_01878 IPR036396 Cytochrome P450 superfamily LL3_01878 IPR017972 Cytochrome P450, conserved site LL3_01879 IPR029476 Deoxyribonuclease NucA/NucB LL3_01880 IPR010699 Protein of unknown function DUF1275 LL3_01883 IPR000209 Peptidase S8/S53 domain LL3_01883 IPR036852 Peptidase S8/S53 domain superfamily LL3_01883 IPR023827 Peptidase S8, subtilisin, Asp-active site LL3_01883 IPR022398 Peptidase S8, subtilisin, His-active site LL3_01883 IPR023828 Peptidase S8, subtilisin, Ser-active site LL3_01883 IPR015500 Peptidase S8, subtilisin-related LL3_01887 IPR038128 Poly-gamma-glutamate hydrolase superfamily LL3_01887 IPR008585 Poly-gamma-glutamate hydrolase LL3_01888 IPR019905 Peroxiredoxin OsmC-like protein, Firmicutes LL3_01888 IPR015946 K homology domain-like, alpha/beta LL3_01888 IPR036102 OsmC/Ohr superfamily LL3_01888 IPR003718 OsmC/Ohr family LL3_01889 IPR000390 Small multidrug resistance protein family LL3_01890 IPR000390 Small multidrug resistance protein family LL3_01892 IPR024307 YmaF LL3_01893 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01893 IPR039657 Dimethylallyltransferase LL3_01893 IPR018022 IPP transferase LL3_01894 IPR010920 LSM domain superfamily LL3_01894 IPR005001 RNA-binding protein Hfq LL3_01895 IPR025448 YmzC-like protein LL3_01897 IPR004465 Ribonucleotide reductase Class Ib, NrdI LL3_01897 IPR020852 Ribonucleotide reductase, class Ib, NrdI, bacterial LL3_01897 IPR029039 Flavoprotein-like superfamily LL3_01898 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal LL3_01898 IPR013554 Ribonucleotide reductase N-terminal LL3_01898 IPR013509 Ribonucleotide reductase large subunit, N-terminal LL3_01898 IPR000788 Ribonucleotide reductase large subunit, C-terminal LL3_01898 IPR026459 Ribonucleotide reductase, class 1b, subunit NrdE LL3_01898 IPR013346 Ribonucleotide reductase, class I , alpha subunit LL3_01898 IPR039718 Ribonucleoside-diphosphate reductase large subunit LL3_01899 IPR012348 Ribonucleotide reductase-like LL3_01899 IPR009078 Ferritin-like superfamily LL3_01899 IPR026494 Ribonucleoside reductase subunit beta, NrdF LL3_01899 IPR033909 Ribonucleotide reductase small subunit LL3_01899 IPR030475 Ribonucleotide reductase small subunit, acitve site LL3_01899 IPR000358 Ribonucleotide reductase small subunit family LL3_01900 IPR015797 NUDIX hydrolase-like domain superfamily LL3_01903 IPR000641 CbxX/CfxQ LL3_01903 IPR003593 AAA+ ATPase domain LL3_01903 IPR041627 CbbX, AAA lid domain LL3_01903 IPR003959 ATPase, AAA-type, core LL3_01903 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01903 IPR014232 Sporulation stage V, protein K LL3_01904 IPR006073 GTP binding domain LL3_01904 IPR016496 GTPase HflX LL3_01904 IPR025121 GTPase HflX, N-terminal LL3_01904 IPR042108 GTPase HflX, N-terminal domain superfamily LL3_01904 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_01904 IPR030394 HflX-type guanine nucleotide-binding (G) domain LL3_01904 IPR032305 GTP-binding protein, middle domain LL3_01905 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_01905 IPR015424 Pyridoxal phosphate-dependent transferase LL3_01905 IPR009651 Putative methionine gamma-lyase LL3_01906 IPR009061 Putative DNA-binding domain superfamily LL3_01906 IPR000551 MerR-type HTH domain LL3_01907 IPR008147 Glutamine synthetase, beta-Grasp domain LL3_01907 IPR036651 Glutamine synthetase, N-terminal domain superfamily LL3_01907 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain LL3_01907 IPR008146 Glutamine synthetase, catalytic domain LL3_01907 IPR027302 Glutamine synthetase, N-terminal conserved site LL3_01907 IPR001637 Glutamine synthetase class-I, adenylation site LL3_01907 IPR004809 Glutamine synthetase type I LL3_01907 IPR027303 Glutamine synthetase, glycine-rich site LL3_01914 IPR036396 Cytochrome P450 superfamily LL3_01914 IPR001128 Cytochrome P450 LL3_01914 IPR002397 Cytochrome P450, B-class LL3_01914 IPR017972 Cytochrome P450, conserved site LL3_01916 IPR036259 MFS transporter superfamily LL3_01916 IPR020846 Major facilitator superfamily domain LL3_01916 IPR001927 Sodium:galactoside symporter LL3_01916 IPR018043 Sodium:galactoside symporter, conserved site LL3_01916 IPR039672 Lactose permease-like LL3_01917 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily LL3_01917 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily LL3_01917 IPR041542 Beta-xylosidase, C-terminal Concanavalin A-like domain LL3_01917 IPR006710 Glycoside hydrolase, family 43 LL3_01918 IPR036390 Winged helix DNA-binding domain superfamily LL3_01918 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_01918 IPR000600 ROK family LL3_01919 IPR001998 Xylose isomerase LL3_01919 IPR013452 Xylose isomerase, bacterial-type LL3_01919 IPR013022 Xylose isomerase-like, TIM barrel domain LL3_01919 IPR036237 Xylose isomerase-like superfamily LL3_01920 IPR000577 Carbohydrate kinase, FGGY LL3_01920 IPR018485 Carbohydrate kinase, FGGY, C-terminal LL3_01920 IPR018484 Carbohydrate kinase, FGGY, N-terminal LL3_01920 IPR006000 Xylulokinase LL3_01920 IPR018483 Carbohydrate kinase, FGGY, conserved site LL3_01921 IPR001137 Glycoside hydrolase family 11 LL3_01921 IPR033119 Glycoside hydrolase family 11, active site 2 LL3_01921 IPR033123 Glycosyl hydrolases family 11 (GH11) domain LL3_01921 IPR013319 Glycoside hydrolase family 11/12 LL3_01921 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily LL3_01921 IPR018208 Glycoside hydrolase family 11, active site 1 LL3_01922 IPR013815 ATP-grasp fold, subdomain 1 LL3_01922 IPR008279 PEP-utilising enzyme, mobile domain LL3_01922 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding LL3_01922 IPR036637 Phosphohistidine domain superfamily LL3_01924 IPR013154 Alcohol dehydrogenase, N-terminal LL3_01924 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site LL3_01924 IPR013149 Alcohol dehydrogenase, C-terminal LL3_01924 IPR011032 GroES-like superfamily LL3_01924 IPR020843 Polyketide synthase, enoylreductase domain LL3_01924 IPR036291 NAD(P)-binding domain superfamily LL3_01926 IPR040702 Response regulator aspartate phosphatase, N-terminal LL3_01926 IPR011990 Tetratricopeptide-like helical domain superfamily LL3_01929 IPR034660 DinB/YfiT-like putative metalloenzymes LL3_01929 IPR007837 DNA damage-inducible protein DinB LL3_01930 IPR020843 Polyketide synthase, enoylreductase domain LL3_01930 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site LL3_01930 IPR013154 Alcohol dehydrogenase, N-terminal LL3_01930 IPR011032 GroES-like superfamily LL3_01930 IPR036291 NAD(P)-binding domain superfamily LL3_01930 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 LL3_01930 IPR013149 Alcohol dehydrogenase, C-terminal LL3_01934 IPR025100 Protein of unknown function DUF4025 LL3_01935 IPR016181 Acyl-CoA N-acyltransferase LL3_01935 IPR000182 GNAT domain LL3_01935 IPR025685 YoaP-like domain LL3_01935 IPR036249 Thioredoxin-like superfamily LL3_01938 IPR032545 Protein of unknown function DUF4944 LL3_01940 IPR024976 Domain of unknown function DUF3885 LL3_01943 IPR004302 Cellulose/chitin-binding protein, N-terminal LL3_01943 IPR020879 N-acetylglucosamine-binding protein A LL3_01943 IPR041029 N-acetylglucosamine binding protein A domain 2 LL3_01943 IPR014756 Immunoglobulin E-set LL3_01948 IPR024535 Pectate lyase superfamily protein LL3_01948 IPR021865 Peptidase G2, IMC autoproteolytic cleavage domain LL3_01948 IPR011050 Pectin lyase fold/virulence factor LL3_01948 IPR012334 Pectin lyase fold LL3_01948 IPR006626 Parallel beta-helix repeat LL3_01949 IPR007829 TM2 domain LL3_01950 IPR033704 dUTPase, trimeric LL3_01950 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase LL3_01950 IPR036157 dUTPase-like superfamily LL3_01950 IPR029054 dUTPase-like LL3_01951 IPR025234 Protein of unknown function DUF4177 LL3_01952 IPR038128 Poly-gamma-glutamate hydrolase superfamily LL3_01952 IPR008585 Poly-gamma-glutamate hydrolase LL3_01955 IPR019649 Protein of unknown function DUF2512 LL3_01957 IPR006200 Transcription regulator LexA LL3_01957 IPR036286 LexA/Signal peptidase-like superfamily LL3_01957 IPR006199 LexA repressor, DNA-binding domain LL3_01957 IPR036390 Winged helix DNA-binding domain superfamily LL3_01957 IPR039418 LexA-like LL3_01957 IPR015927 Peptidase S24/S26A/S26B/S26C LL3_01957 IPR011991 ArsR-like helix-turn-helix domain LL3_01957 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_01957 IPR006197 Peptidase S24, LexA-like LL3_01958 IPR022887 Cell division suppressor protein, YneA LL3_01958 IPR018392 LysM domain LL3_01958 IPR036779 LysM domain superfamily LL3_01959 IPR006119 Resolvase, N-terminal catalytic domain LL3_01959 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily LL3_01960 IPR009242 Protein of unknown function DUF896 LL3_01961 IPR029061 Thiamin diphosphate-binding fold LL3_01961 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II LL3_01961 IPR005478 Transketolase, bacterial-like LL3_01961 IPR020826 Transketolase binding site LL3_01961 IPR005475 Transketolase-like, pyrimidine-binding domain LL3_01961 IPR033247 Transketolase family LL3_01961 IPR005474 Transketolase, N-terminal LL3_01961 IPR033248 Transketolase, C-terminal domain LL3_01962 IPR038449 SirA superfamily LL3_01962 IPR019683 Sporulation inhibitor of replication protein SirA LL3_01963 IPR005359 Protein with unknown function UPF0154 LL3_01964 IPR037208 Aspartyl-phosphate phosphatase Spo0E-like superfamily LL3_01964 IPR018540 Aspartyl-phosphate phosphatase Spo0E-like LL3_01965 IPR003834 Cytochrome C biogenesis protein, transmembrane domain LL3_01966 IPR011006 CheY-like superfamily LL3_01966 IPR001789 Signal transduction response regulator, receiver domain LL3_01967 IPR031306 CcdC protein LL3_01968 IPR020203 Uncharacterised protein family, YneK LL3_01969 IPR008978 HSP20-like chaperone LL3_01970 IPR012614 Small acid-soluble spore protein, SspP LL3_01971 IPR012613 Small acid-soluble spore protein, SspO LL3_01972 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain LL3_01972 IPR018136 Aconitase family, 4Fe-4S cluster binding site LL3_01972 IPR006249 Aconitase/Iron-responsive element-binding protein 2 LL3_01972 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel LL3_01972 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain LL3_01972 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 LL3_01972 IPR036008 Aconitase, iron-sulfur domain LL3_01973 IPR013766 Thioredoxin domain LL3_01973 IPR036249 Thioredoxin-like superfamily LL3_01973 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant LL3_01974 IPR025004 Transcriptional regulatory protein SenN/SenS LL3_01975 IPR012612 Small acid-soluble spore protein, SspN LL3_01976 IPR017524 Small acid-soluble spore protein, thioredoxin-like LL3_01977 IPR006683 Thioesterase domain LL3_01977 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family LL3_01977 IPR029069 HotDog domain superfamily LL3_01979 IPR035903 HesB-like domain superfamily LL3_01979 IPR000361 FeS cluster biogenesis LL3_01979 IPR008326 Uncharacterised conserved protein UCP034852 LL3_01980 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY LL3_01981 IPR003781 CoA-binding LL3_01981 IPR036291 NAD(P)-binding domain superfamily LL3_01982 IPR002288 DNA gyrase B subunit, C-terminal LL3_01982 IPR001241 DNA topoisomerase, type IIA LL3_01982 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup LL3_01982 IPR013760 DNA topoisomerase, type IIA-like domain superfamily LL3_01982 IPR003594 Histidine kinase/HSP90-like ATPase LL3_01982 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal LL3_01982 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 LL3_01982 IPR006171 TOPRIM domain LL3_01982 IPR005740 DNA topoisomerase 4 subunit B, Firmicutes/Mollicutes LL3_01982 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_01982 IPR020568 Ribosomal protein S5 domain 2-type fold LL3_01982 IPR018522 DNA topoisomerase, type IIA, conserved site LL3_01983 IPR013760 DNA topoisomerase, type IIA-like domain superfamily LL3_01983 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat LL3_01983 IPR005741 DNA topoisomerase IV subunit A, Gram-positive LL3_01983 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily LL3_01983 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta LL3_01983 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal LL3_01983 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal LL3_01986 IPR001463 Sodium:alanine symporter LL3_01990 IPR025311 Domain of unknown function DUF4166 LL3_01992 IPR025450 YndJ-like protein LL3_01995 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LL3_01995 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LL3_01995 IPR003594 Histidine kinase/HSP90-like ATPase LL3_01995 IPR005467 Histidine kinase domain LL3_01995 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_01995 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LL3_01996 IPR011006 CheY-like superfamily LL3_01996 IPR001867 OmpR/PhoB-type DNA-binding domain LL3_01996 IPR001789 Signal transduction response regulator, receiver domain LL3_01996 IPR039420 Transcriptional regulatory protein WalR-like LL3_01996 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_01996 IPR016032 Signal transduction response regulator, C-terminal effector LL3_01997 IPR033453 Glycosyl hydrolase family 30, TIM-barrel domain LL3_01997 IPR033452 Glycosyl hydrolase family 30, beta sandwich domain LL3_01997 IPR017853 Glycoside hydrolase superfamily LL3_01997 IPR013780 Glycosyl hydrolase, all-beta LL3_01997 IPR001139 Glycoside hydrolase family 30 LL3_01998 IPR006584 Cellulose binding, type IV LL3_01998 IPR005084 Carbohydrate binding module family 6 LL3_01998 IPR008979 Galactose-binding-like domain superfamily LL3_01998 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily LL3_01998 IPR006710 Glycoside hydrolase, family 43 LL3_02000 IPR000873 AMP-dependent synthetase/ligase LL3_02000 IPR006162 Phosphopantetheine attachment site LL3_02000 IPR009081 Phosphopantetheine binding ACP domain LL3_02000 IPR020802 Polyketide synthase, thioesterase domain LL3_02000 IPR010060 Non-ribosomal peptide synthase LL3_02000 IPR001242 Condensation domain LL3_02000 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily LL3_02000 IPR042099 AMP-dependent synthetase-like superfamily LL3_02000 IPR010071 Amino acid adenylation domain LL3_02000 IPR020845 AMP-binding, conserved site LL3_02000 IPR025110 AMP-binding enzyme, C-terminal domain LL3_02000 IPR001031 Thioesterase LL3_02000 IPR029058 Alpha/Beta hydrolase fold LL3_02000 IPR036736 ACP-like superfamily LL3_02001 IPR000873 AMP-dependent synthetase/ligase LL3_02001 IPR006162 Phosphopantetheine attachment site LL3_02001 IPR025110 AMP-binding enzyme, C-terminal domain LL3_02001 IPR020845 AMP-binding, conserved site LL3_02001 IPR042099 AMP-dependent synthetase-like superfamily LL3_02001 IPR009081 Phosphopantetheine binding ACP domain LL3_02001 IPR001242 Condensation domain LL3_02001 IPR010060 Non-ribosomal peptide synthase LL3_02001 IPR020806 Polyketide synthase, phosphopantetheine-binding domain LL3_02001 IPR036736 ACP-like superfamily LL3_02001 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily LL3_02001 IPR010071 Amino acid adenylation domain LL3_02002 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_02002 IPR032821 Ketoacyl-synthetase, C-terminal extension LL3_02002 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_02002 IPR015424 Pyridoxal phosphate-dependent transferase LL3_02002 IPR006162 Phosphopantetheine attachment site LL3_02002 IPR009081 Phosphopantetheine binding ACP domain LL3_02002 IPR020806 Polyketide synthase, phosphopantetheine-binding domain LL3_02002 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain LL3_02002 IPR014030 Beta-ketoacyl synthase, N-terminal LL3_02002 IPR014031 Beta-ketoacyl synthase, C-terminal LL3_02002 IPR018201 Beta-ketoacyl synthase, active site LL3_02002 IPR005814 Aminotransferase class-III LL3_02002 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily LL3_02002 IPR016039 Thiolase-like LL3_02002 IPR042099 AMP-dependent synthetase-like superfamily LL3_02002 IPR000873 AMP-dependent synthetase/ligase LL3_02002 IPR020845 AMP-binding, conserved site LL3_02002 IPR025110 AMP-binding enzyme, C-terminal domain LL3_02002 IPR036736 ACP-like superfamily LL3_02002 IPR010071 Amino acid adenylation domain LL3_02002 IPR001242 Condensation domain LL3_02003 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type LL3_02003 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase LL3_02003 IPR014043 Acyl transferase LL3_02003 IPR001227 Acyl transferase domain superfamily LL3_02003 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding LL3_02006 IPR002347 Short-chain dehydrogenase/reductase SDR LL3_02006 IPR020904 Short-chain dehydrogenase/reductase, conserved site LL3_02006 IPR011294 3-hydroxybutyrate dehydrogenase LL3_02006 IPR036291 NAD(P)-binding domain superfamily LL3_02007 IPR004164 Coenzyme A transferase active site LL3_02007 IPR012791 3-oxoacid CoA-transferase, subunit B LL3_02007 IPR004165 Coenzyme A transferase family I LL3_02007 IPR037171 NagB/RpiA transferase-like LL3_02008 IPR004165 Coenzyme A transferase family I LL3_02008 IPR012792 3-oxoacid CoA-transferase, subunit A LL3_02008 IPR004163 Coenzyme A transferase binding site LL3_02008 IPR037171 NagB/RpiA transferase-like LL3_02009 IPR017972 Cytochrome P450, conserved site LL3_02009 IPR002397 Cytochrome P450, B-class LL3_02009 IPR001128 Cytochrome P450 LL3_02009 IPR036396 Cytochrome P450 superfamily LL3_02010 IPR024177 Biotin synthase LL3_02010 IPR006638 Elp3/MiaB/NifB LL3_02010 IPR010722 Biotin and thiamin synthesis-associated domain LL3_02010 IPR013785 Aldolase-type TIM barrel LL3_02010 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB LL3_02010 IPR007197 Radical SAM LL3_02011 IPR004472 Dethiobiotin synthase BioD LL3_02011 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02012 IPR015424 Pyridoxal phosphate-dependent transferase LL3_02012 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_02012 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_02012 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type LL3_02012 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site LL3_02012 IPR004839 Aminotransferase, class I/classII LL3_02013 IPR005814 Aminotransferase class-III LL3_02013 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA LL3_02013 IPR015424 Pyridoxal phosphate-dependent transferase LL3_02013 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_02013 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_02014 IPR005499 6-carboxyhexanoate--CoA ligase LL3_02015 IPR007267 GtrA-like protein LL3_02016 IPR029044 Nucleotide-diphospho-sugar transferases LL3_02016 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type LL3_02016 IPR005835 Nucleotidyl transferase domain LL3_02017 IPR032816 SNARE associated Golgi protein LL3_02018 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal LL3_02018 IPR029045 ClpP/crotonase-like domain superfamily LL3_02018 IPR034733 Acetyl-CoA carboxylase LL3_02018 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal LL3_02019 IPR029045 ClpP/crotonase-like domain superfamily LL3_02019 IPR001753 Enoyl-CoA hydratase/isomerase LL3_02019 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site LL3_02019 IPR014748 Enoyl-CoA hydratase, C-terminal LL3_02020 IPR013785 Aldolase-type TIM barrel LL3_02020 IPR000891 Pyruvate carboxyltransferase LL3_02021 IPR011053 Single hybrid motif LL3_02021 IPR000089 Biotin/lipoyl attachment LL3_02022 IPR011761 ATP-grasp fold LL3_02022 IPR013815 ATP-grasp fold, subdomain 1 LL3_02022 IPR005481 Biotin carboxylase-like, N-terminal domain LL3_02022 IPR005482 Biotin carboxylase, C-terminal LL3_02022 IPR011764 Biotin carboxylation domain LL3_02022 IPR011054 Rudiment single hybrid motif LL3_02022 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain LL3_02022 IPR016185 Pre-ATP-grasp domain superfamily LL3_02023 IPR020845 AMP-binding, conserved site LL3_02023 IPR000873 AMP-dependent synthetase/ligase LL3_02023 IPR025110 AMP-binding enzyme, C-terminal domain LL3_02024 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily LL3_02024 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal LL3_02024 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal LL3_02024 IPR006089 Acyl-CoA dehydrogenase, conserved site LL3_02024 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain LL3_02024 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal LL3_02024 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily LL3_02025 IPR013785 Aldolase-type TIM barrel LL3_02025 IPR003790 Glycosyl hydrolase-like 10 LL3_02025 IPR017853 Glycoside hydrolase superfamily LL3_02025 IPR013783 Immunoglobulin-like fold LL3_02026 IPR010773 Mycobacterium phage PG1, Gp7 LL3_02027 IPR001031 Thioesterase LL3_02027 IPR006162 Phosphopantetheine attachment site LL3_02027 IPR009081 Phosphopantetheine binding ACP domain LL3_02027 IPR020806 Polyketide synthase, phosphopantetheine-binding domain LL3_02027 IPR001242 Condensation domain LL3_02027 IPR010071 Amino acid adenylation domain LL3_02027 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily LL3_02027 IPR042099 AMP-dependent synthetase-like superfamily LL3_02027 IPR000873 AMP-dependent synthetase/ligase LL3_02027 IPR020845 AMP-binding, conserved site LL3_02027 IPR020459 AMP-binding LL3_02027 IPR025110 AMP-binding enzyme, C-terminal domain LL3_02027 IPR020802 Polyketide synthase, thioesterase domain LL3_02027 IPR029058 Alpha/Beta hydrolase fold LL3_02027 IPR036736 ACP-like superfamily LL3_02028 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily LL3_02028 IPR000873 AMP-dependent synthetase/ligase LL3_02028 IPR020845 AMP-binding, conserved site LL3_02028 IPR025110 AMP-binding enzyme, C-terminal domain LL3_02028 IPR001242 Condensation domain LL3_02028 IPR006162 Phosphopantetheine attachment site LL3_02028 IPR020806 Polyketide synthase, phosphopantetheine-binding domain LL3_02028 IPR009081 Phosphopantetheine binding ACP domain LL3_02028 IPR036736 ACP-like superfamily LL3_02028 IPR029058 Alpha/Beta hydrolase fold LL3_02028 IPR010071 Amino acid adenylation domain LL3_02028 IPR010060 Non-ribosomal peptide synthase LL3_02028 IPR042099 AMP-dependent synthetase-like superfamily LL3_02030 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C LL3_02030 IPR012338 Beta-lactamase/transpeptidase-like LL3_02031 IPR014718 Glycoside hydrolase-type carbohydrate-binding LL3_02031 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase LL3_02031 IPR011013 Galactose mutarotase-like domain superfamily LL3_02032 IPR002528 Multi antimicrobial extrusion protein LL3_02034 IPR031841 DL-endopeptidase inhibitor IseA LL3_02035 IPR011010 DNA breaking-rejoining enzyme, catalytic core LL3_02035 IPR013762 Integrase-like, catalytic domain superfamily LL3_02035 IPR002104 Integrase, catalytic domain LL3_02036 IPR010093 SinI-like, DNA-binding domain LL3_02036 IPR041657 Helix-turn-helix domain, group 17 LL3_02037 IPR029055 Nucleophile aminohydrolases, N-terminal LL3_02037 IPR000101 Gamma-glutamyltranspeptidase LL3_02038 IPR011701 Major facilitator superfamily LL3_02038 IPR020846 Major facilitator superfamily domain LL3_02038 IPR036259 MFS transporter superfamily LL3_02039 IPR001845 HTH ArsR-type DNA-binding domain LL3_02039 IPR036390 Winged helix DNA-binding domain superfamily LL3_02039 IPR011991 ArsR-like helix-turn-helix domain LL3_02039 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_02043 IPR028261 Dihydroprymidine dehydrogenase domain II LL3_02043 IPR036188 FAD/NAD(P)-binding domain superfamily LL3_02043 IPR023753 FAD/NAD(P)-binding domain LL3_02043 IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 LL3_02043 IPR009051 Alpha-helical ferredoxin LL3_02044 IPR017932 Glutamine amidotransferase type 2 domain LL3_02044 IPR013785 Aldolase-type TIM barrel LL3_02044 IPR002489 Glutamate synthase, alpha subunit, C-terminal LL3_02044 IPR029055 Nucleophile aminohydrolases, N-terminal LL3_02044 IPR002932 Glutamate synthase domain LL3_02044 IPR006982 Glutamate synthase, central-N LL3_02044 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily LL3_02045 IPR036390 Winged helix DNA-binding domain superfamily LL3_02045 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_02045 IPR000847 Transcription regulator HTH, LysR LL3_02045 IPR005119 LysR, substrate-binding LL3_02046 IPR041739 Glutamate-5-kinase domain LL3_02046 IPR036974 PUA domain superfamily LL3_02046 IPR019797 Glutamate 5-kinase, conserved site LL3_02046 IPR011529 Glutamate 5-kinase LL3_02046 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase LL3_02046 IPR001048 Aspartate/glutamate/uridylate kinase LL3_02046 IPR036393 Acetylglutamate kinase-like superfamily LL3_02046 IPR015947 PUA-like superfamily LL3_02046 IPR002478 PUA domain LL3_02046 IPR001057 Glutamate/acetylglutamate kinase LL3_02047 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily LL3_02047 IPR000304 Pyrroline-5-carboxylate reductase LL3_02047 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain LL3_02047 IPR036291 NAD(P)-binding domain superfamily LL3_02047 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal LL3_02048 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_02048 IPR036390 Winged helix DNA-binding domain superfamily LL3_02048 IPR003432 Replication terminator protein LL3_02049 IPR002347 Short-chain dehydrogenase/reductase SDR LL3_02049 IPR036291 NAD(P)-binding domain superfamily LL3_02049 IPR020904 Short-chain dehydrogenase/reductase, conserved site LL3_02050 IPR009293 Uncharacterised protein family UPF0478 LL3_02052 IPR030874 Cardiolipin synthase, Firmicutes-type LL3_02052 IPR022924 Cardiolipin synthase LL3_02052 IPR001736 Phospholipase D/Transphosphatidylase LL3_02052 IPR027379 Cardiolipin synthase N-terminal LL3_02052 IPR025202 Phospholipase D-like domain LL3_02054 IPR007353 Protein of unknown function DUF421 LL3_02054 IPR023090 UPF0702, alpha/beta domain superfamily LL3_02055 IPR014204 Sporulation stage V, protein AE LL3_02055 IPR005562 SpoVA LL3_02056 IPR010894 Stage V sporulation AD LL3_02056 IPR038369 Stage V sporulation AD superfamily LL3_02056 IPR016039 Thiolase-like LL3_02057 IPR014203 Sporulation stage V, protein AC LL3_02057 IPR005562 SpoVA LL3_02062 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily LL3_02062 IPR006120 Resolvase, HTH domain LL3_02062 IPR006118 Recombinase, conserved site LL3_02062 IPR006119 Resolvase, N-terminal catalytic domain LL3_02063 IPR025296 Domain of unknown function DUF4158 LL3_02063 IPR002513 Tn3 transposase DDE domain LL3_02064 IPR011701 Major facilitator superfamily LL3_02064 IPR020846 Major facilitator superfamily domain LL3_02064 IPR036259 MFS transporter superfamily LL3_02064 IPR004748 Polyol permease LL3_02065 IPR018484 Carbohydrate kinase, FGGY, N-terminal LL3_02065 IPR018485 Carbohydrate kinase, FGGY, C-terminal LL3_02065 IPR000577 Carbohydrate kinase, FGGY LL3_02066 IPR036291 NAD(P)-binding domain superfamily LL3_02066 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain LL3_02066 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site LL3_02066 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LL3_02073 IPR012340 Nucleic acid-binding, OB-fold LL3_02073 IPR008231 Probable chaperone CsaA LL3_02073 IPR002547 tRNA-binding domain LL3_02074 IPR013096 Cupin 2, conserved barrel LL3_02074 IPR011051 RmlC-like cupin domain superfamily LL3_02074 IPR014710 RmlC-like jelly roll fold LL3_02074 IPR018062 HTH domain AraC-type, conserved site LL3_02074 IPR018060 DNA binding HTH domain, AraC-type LL3_02074 IPR009057 Homeobox-like domain superfamily LL3_02075 IPR025996 Tetracyclin repressor-like, C-terminal domain (WHG) LL3_02075 IPR009057 Homeobox-like domain superfamily LL3_02075 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily LL3_02075 IPR001647 DNA-binding HTH domain, TetR-type LL3_02076 IPR001279 Metallo-beta-lactamase LL3_02076 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like LL3_02079 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_02079 IPR011991 ArsR-like helix-turn-helix domain LL3_02079 IPR036390 Winged helix DNA-binding domain superfamily LL3_02079 IPR001845 HTH ArsR-type DNA-binding domain LL3_02080 IPR023346 Lysozyme-like domain superfamily LL3_02081 IPR007352 Protein of unknown function DUF420 LL3_02082 IPR040983 Bacterial archaeo-eukaryotic release factor family 5 LL3_02084 IPR016181 Acyl-CoA N-acyltransferase LL3_02085 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal LL3_02085 IPR040921 LD-carboxypeptidase, C-terminal LL3_02085 IPR040449 LD-carboxypeptidase, N-terminal LL3_02085 IPR029062 Class I glutamine amidotransferase-like LL3_02085 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily LL3_02085 IPR003507 Peptidase family S66 LL3_02088 IPR036779 LysM domain superfamily LL3_02088 IPR010611 3D domain LL3_02088 IPR018392 LysM domain LL3_02088 IPR036908 RlpA-like domain superfamily LL3_02090 IPR011545 DEAD/DEAH box helicase domain LL3_02090 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial LL3_02090 IPR010997 HRDC-like superfamily LL3_02090 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02090 IPR018982 RQC domain LL3_02090 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_02090 IPR001650 Helicase, C-terminal LL3_02090 IPR014001 Helicase superfamily 1/2, ATP-binding domain LL3_02090 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain LL3_02090 IPR004589 DNA helicase, ATP-dependent, RecQ type LL3_02090 IPR036390 Winged helix DNA-binding domain superfamily LL3_02090 IPR002121 HRDC domain LL3_02092 IPR023048 NADH-azoreductase, FMN-dependent LL3_02092 IPR029039 Flavoprotein-like superfamily LL3_02092 IPR003680 Flavodoxin-like fold LL3_02093 IPR000962 Zinc finger, DksA/TraR C4-type LL3_02093 IPR020458 Zinc finger, DksA/TraR C4-type conserved site LL3_02093 IPR037187 DksA, N-terminal domain superfamily LL3_02096 IPR008978 HSP20-like chaperone LL3_02096 IPR002068 Alpha crystallin/Hsp20 domain LL3_02096 IPR031107 Small heat shock protein HSP20 LL3_02099 IPR037063 Bacterial Pleckstrin homology domain superfamily LL3_02099 IPR012544 Bacterial Pleckstrin homology domain LL3_02102 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent LL3_02102 IPR015590 Aldehyde dehydrogenase domain LL3_02102 IPR016162 Aldehyde dehydrogenase, N-terminal LL3_02102 IPR029510 Aldehyde dehydrogenase, glutamic acid active site LL3_02102 IPR016163 Aldehyde dehydrogenase, C-terminal LL3_02102 IPR016161 Aldehyde/histidinol dehydrogenase LL3_02103 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid LL3_02103 IPR018333 Squalene cyclase LL3_02103 IPR032696 Squalene cyclase, C-terminal LL3_02103 IPR032697 Squalene cyclase, N-terminal LL3_02104 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily LL3_02104 IPR019832 Manganese/iron superoxide dismutase, C-terminal LL3_02104 IPR019833 Manganese/iron superoxide dismutase, binding site LL3_02104 IPR001189 Manganese/iron superoxide dismutase LL3_02104 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily LL3_02104 IPR019831 Manganese/iron superoxide dismutase, N-terminal LL3_02105 IPR000175 Sodium:neurotransmitter symporter LL3_02105 IPR037272 Sodium:neurotransmitter symporter superfamily LL3_02106 IPR038770 Sodium/solute symporter superfamily LL3_02106 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 LL3_02106 IPR004710 Bile acid:sodium symporter LL3_02107 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like LL3_02107 IPR001279 Metallo-beta-lactamase LL3_02108 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily LL3_02108 IPR004167 Peripheral subunit-binding domain LL3_02108 IPR036625 E3-binding domain superfamily LL3_02108 IPR011053 Single hybrid motif LL3_02108 IPR000089 Biotin/lipoyl attachment LL3_02108 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain LL3_02108 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site LL3_02108 IPR006255 Dihydrolipoamide succinyltransferase LL3_02109 IPR042179 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain superfamily LL3_02109 IPR029061 Thiamin diphosphate-binding fold LL3_02109 IPR005475 Transketolase-like, pyrimidine-binding domain LL3_02109 IPR023784 2-oxoglutarate dehydrogenase E1 component, bacterial LL3_02109 IPR011603 2-oxoglutarate dehydrogenase E1 component LL3_02109 IPR001017 Dehydrogenase, E1 component LL3_02109 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal LL3_02110 IPR036465 von Willebrand factor A-like domain superfamily LL3_02110 IPR002035 von Willebrand factor, type A LL3_02111 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02111 IPR001270 ClpA/B family LL3_02111 IPR003593 AAA+ ATPase domain LL3_02111 IPR011704 ATPase, dynein-related, AAA domain LL3_02112 IPR032831 Prokaryotic lipoprotein-attachment site LL3_02112 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily LL3_02112 IPR024134 Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone LL3_02112 IPR001424 Superoxide dismutase, copper/zinc binding domain LL3_02113 IPR036779 LysM domain superfamily LL3_02113 IPR018392 LysM domain LL3_02113 IPR000064 Endopeptidase, NLPC/P60 domain LL3_02113 IPR038765 Papain-like cysteine peptidase superfamily LL3_02115 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase LL3_02115 IPR006326 UDP-glycosyltransferase, MGT LL3_02116 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily LL3_02116 IPR014046 Diadenylate cyclase LL3_02116 IPR019457 Uncharacterised domain YojJ, N-terminal LL3_02116 IPR003390 DNA integrity scanning protein, DisA, N-terminal LL3_02116 IPR034693 Diadenylate cyclase CdaS LL3_02118 IPR002528 Multi antimicrobial extrusion protein LL3_02119 IPR036513 STAS domain superfamily LL3_02119 IPR002645 STAS domain LL3_02120 IPR023841 Bacillithiol biosynthesis deacetylase BshB2 LL3_02120 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related LL3_02120 IPR024078 Putative deacetylase LmbE-like domain superfamily LL3_02121 IPR036492 Hypothetical protein YojF superfamily LL3_02121 IPR014934 Protein of unknown function DUF1806 LL3_02123 IPR000620 EamA domain LL3_02123 IPR004626 RarD protein LL3_02124 IPR008978 HSP20-like chaperone LL3_02126 IPR014347 Tautomerase/MIF superfamily LL3_02126 IPR037479 Tautomerase, MSAD family LL3_02128 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_02128 IPR002577 Helix-turn-helix, HxlR type LL3_02128 IPR036390 Winged helix DNA-binding domain superfamily LL3_02128 IPR011991 ArsR-like helix-turn-helix domain LL3_02129 IPR000415 Nitroreductase-like LL3_02129 IPR029479 Nitroreductase LL3_02130 IPR029058 Alpha/Beta hydrolase fold LL3_02130 IPR002925 Dienelactone hydrolase LL3_02131 IPR000595 Cyclic nucleotide-binding domain LL3_02131 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase LL3_02131 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain LL3_02131 IPR037523 Vicinal oxygen chelate (VOC) domain LL3_02132 IPR021741 Protein of unknown function DUF3311 LL3_02133 IPR001734 Sodium/solute symporter LL3_02133 IPR038377 Sodium/glucose symporter superfamily LL3_02135 IPR018120 Glycoside hydrolase family 1, active site LL3_02135 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site LL3_02135 IPR017853 Glycoside hydrolase superfamily LL3_02135 IPR001360 Glycoside hydrolase family 1 LL3_02136 IPR011663 UbiC transcription regulator-associated LL3_02136 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_02136 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily LL3_02136 IPR000524 Transcription regulator HTH, GntR LL3_02136 IPR036390 Winged helix DNA-binding domain superfamily LL3_02137 IPR005151 Tail specific protease LL3_02137 IPR036366 PGBD superfamily LL3_02137 IPR002477 Peptidoglycan binding-like LL3_02137 IPR001478 PDZ domain LL3_02137 IPR004447 C-terminal-processing peptidase S41A LL3_02137 IPR036365 PGBD-like superfamily LL3_02137 IPR036034 PDZ superfamily LL3_02137 IPR029045 ClpP/crotonase-like domain superfamily LL3_02137 IPR041489 PDZ domain 6 LL3_02138 IPR013216 Methyltransferase type 11 LL3_02138 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_02140 IPR003709 Peptidase M15B LL3_02140 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily LL3_02141 IPR004402 Purine nucleoside phosphorylase DeoD-type LL3_02141 IPR000845 Nucleoside phosphorylase domain LL3_02141 IPR018016 Nucleoside phosphorylase, conserved site LL3_02141 IPR035994 Nucleoside phosphorylase superfamily LL3_02143 IPR025923 YodL-like LL3_02144 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily LL3_02144 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase LL3_02145 IPR025545 YozD-like protein LL3_02148 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase LL3_02148 IPR037523 Vicinal oxygen chelate (VOC) domain LL3_02148 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain LL3_02149 IPR036806 YozE SAM-like superfamily LL3_02149 IPR023089 YozE SAM-like domain LL3_02149 IPR010673 Protein of unknown function UPF0346 LL3_02150 IPR022453 Zinc finger, MqsA-type LL3_02150 IPR022451 Conserved hypothetical protein CHP03829, YokU LL3_02151 IPR022459 Lysine-2,3-aminomutase LL3_02151 IPR013785 Aldolase-type TIM barrel LL3_02151 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase LL3_02151 IPR025895 Lysine-2,3-aminomutase, C-terminal domain LL3_02152 IPR016181 Acyl-CoA N-acyltransferase LL3_02152 IPR022525 Beta-lysine N-acetyltransferase LL3_02152 IPR000182 GNAT domain LL3_02153 IPR010182 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase/Succinyl-diaminopimelate desuccinylase LL3_02153 IPR002933 Peptidase M20 LL3_02153 IPR011650 Peptidase M20, dimerisation domain LL3_02153 IPR036264 Bacterial exopeptidase dimerisation domain LL3_02154 IPR012791 3-oxoacid CoA-transferase, subunit B LL3_02154 IPR004165 Coenzyme A transferase family I LL3_02154 IPR037171 NagB/RpiA transferase-like LL3_02155 IPR004165 Coenzyme A transferase family I LL3_02155 IPR037171 NagB/RpiA transferase-like LL3_02155 IPR004163 Coenzyme A transferase binding site LL3_02155 IPR012792 3-oxoacid CoA-transferase, subunit A LL3_02156 IPR005814 Aminotransferase class-III LL3_02156 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_02156 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_02156 IPR015424 Pyridoxal phosphate-dependent transferase LL3_02158 IPR010499 Bacterial transcription activator, effector binding LL3_02158 IPR029442 GyrI-like small molecule binding domain LL3_02158 IPR011256 Regulatory factor, effector binding domain superfamily LL3_02161 IPR016181 Acyl-CoA N-acyltransferase LL3_02161 IPR000182 GNAT domain LL3_02162 IPR001173 Glycosyltransferase 2-like LL3_02162 IPR029044 Nucleotide-diphospho-sugar transferases LL3_02165 IPR024542 Domain of unknown function DUF3880 LL3_02166 IPR003431 Beta propeller phytase LL3_02166 IPR011042 Six-bladed beta-propeller, TolB-like LL3_02167 IPR013692 UDP-glucose 4-epimerase CapD, C-terminal domain LL3_02167 IPR036291 NAD(P)-binding domain superfamily LL3_02167 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain LL3_02170 IPR013785 Aldolase-type TIM barrel LL3_02170 IPR037396 FMN hydroxy acid dehydrogenase domain LL3_02170 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site LL3_02170 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent LL3_02170 IPR000262 FMN-dependent dehydrogenase LL3_02170 IPR037350 Lactate 2-monooxygenase, FMN-binding domain LL3_02173 IPR011109 DNA-binding recombinase domain LL3_02173 IPR038109 DNA-binding recombinase domain superfamily LL3_02173 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily LL3_02173 IPR006119 Resolvase, N-terminal catalytic domain LL3_02174 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain LL3_02174 IPR036291 NAD(P)-binding domain superfamily LL3_02174 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_02175 IPR028427 Peptide methionine sulfoxide reductase LL3_02175 IPR002579 Peptide methionine sulphoxide reductase MrsB LL3_02175 IPR011057 Mss4-like superfamily LL3_02176 IPR002569 Peptide methionine sulphoxide reductase MsrA LL3_02176 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily LL3_02177 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_02177 IPR036390 Winged helix DNA-binding domain superfamily LL3_02177 IPR000835 MarR-type HTH domain LL3_02178 IPR018672 Protein of unknown function DUF2140 LL3_02179 IPR036514 SGNH hydrolase superfamily LL3_02179 IPR013830 SGNH hydrolase-type esterase domain LL3_02180 IPR036249 Thioredoxin-like superfamily LL3_02180 IPR013766 Thioredoxin domain LL3_02180 IPR003782 Copper chaperone SCO1/SenC LL3_02181 IPR019687 Protein of unknown function DUF2535 LL3_02182 IPR011820 L-threonine dehydratase biosynthetic IlvA LL3_02182 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site LL3_02182 IPR001721 Threonine dehydratase, ACT-like domain LL3_02182 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme LL3_02182 IPR001926 Pyridoxal-phosphate dependent enzyme LL3_02183 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02183 IPR003593 AAA+ ATPase domain LL3_02183 IPR013668 Ribonuclease R winged-helix domain LL3_02183 IPR002078 RNA polymerase sigma factor 54 interaction domain LL3_02183 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_02184 IPR004254 AdipoR/Haemolysin-III-related LL3_02184 IPR005744 Hly-III LL3_02186 IPR024072 Dihydrofolate reductase-like domain superfamily LL3_02186 IPR012259 Dihydrofolate reductase LL3_02186 IPR017925 Dihydrofolate reductase conserved site LL3_02186 IPR001796 Dihydrofolate reductase domain LL3_02187 IPR020940 Thymidylate synthase, active site LL3_02187 IPR000398 Thymidylate synthase LL3_02187 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain LL3_02187 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily LL3_02188 IPR025616 YpjP-like protein LL3_02189 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_02189 IPR007536 Ribosomal RNA small subunit methyltransferase J LL3_02190 IPR036249 Thioredoxin-like superfamily LL3_02190 IPR009474 Putative bacilliredoxin, YphP/YqiW family LL3_02191 IPR004404 Dihydroxy-acid dehydratase LL3_02191 IPR042096 Dihydroxy-acid dehydratase, C-terminal LL3_02191 IPR037237 IlvD/EDD, N-terminal domain LL3_02191 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase LL3_02191 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site LL3_02192 IPR011989 Armadillo-like helical LL3_02192 IPR016024 Armadillo-type fold LL3_02192 IPR014824 Scaffold protein Nfu/NifU, N-terminal LL3_02192 IPR036498 Scaffold protein Nfu/NifU, N-terminal domain superfamily LL3_02192 IPR004155 PBS lyase HEAT-like repeat LL3_02192 IPR025989 Virulence factor domain LL3_02193 IPR006674 HD domain LL3_02193 IPR003607 HD/PDEase domain LL3_02194 IPR000889 Glutathione peroxidase LL3_02194 IPR029760 Glutathione peroxidase conserved site LL3_02194 IPR036249 Thioredoxin-like superfamily LL3_02194 IPR029759 Glutathione peroxidase active site LL3_02196 IPR033752 MetA family LL3_02196 IPR005697 Homoserine O-succinyltransferase MetA LL3_02196 IPR029062 Class I glutamine amidotransferase-like LL3_02197 IPR023589 Processive diacylglycerol beta-glucosyltransferase LL3_02197 IPR009695 Diacylglycerol glucosyltransferase, N-terminal LL3_02197 IPR001296 Glycosyl transferase, family 1 LL3_02198 IPR012156 Cold shock, CspA LL3_02198 IPR002059 Cold-shock protein, DNA-binding LL3_02198 IPR019844 Cold-shock (CSD) domain LL3_02198 IPR011129 Cold shock domain LL3_02198 IPR012340 Nucleic acid-binding, OB-fold LL3_02200 IPR020314 Uncharacterised protein family YpzA LL3_02201 IPR019718 Protein of unknown function DUF2602 LL3_02202 IPR012337 Ribonuclease H-like superfamily LL3_02202 IPR036397 Ribonuclease H superfamily LL3_02202 IPR002156 Ribonuclease H domain LL3_02203 IPR003744 Queuosine precursor transporter LL3_02204 IPR036397 Ribonuclease H superfamily LL3_02204 IPR002156 Ribonuclease H domain LL3_02204 IPR012337 Ribonuclease H-like superfamily LL3_02205 IPR017526 Small acid-soluble spore protein, SspL LL3_02206 IPR038969 Flap endonuclease LL3_02206 IPR029060 PIN-like domain superfamily LL3_02206 IPR020045 DNA polymerase I-like, H3TH domain LL3_02206 IPR008918 Helix-hairpin-helix motif, class 2 LL3_02206 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal LL3_02206 IPR002421 5'-3' exonuclease, N-terminal LL3_02206 IPR036279 5'-3' exonuclease, C-terminal domain superfamily LL3_02208 IPR019688 Protein of unknown function DUF2533 LL3_02209 IPR022812 Dynamin superfamily LL3_02209 IPR027094 Mitofusin family LL3_02209 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02212 IPR007269 Isoprenylcysteine carboxyl methyltransferase LL3_02213 IPR016039 Thiolase-like LL3_02213 IPR012328 Chalcone/stilbene synthase, C-terminal LL3_02213 IPR011141 Polyketide synthase, type III LL3_02213 IPR001099 Chalcone/stilbene synthase, N-terminal LL3_02213 IPR018088 Chalcone/stilbene synthase, active site LL3_02218 IPR017588 Uric acid permease UacT-like LL3_02218 IPR006042 Xanthine/uracil permease LL3_02218 IPR006043 Xanthine/uracil/vitamin C permease LL3_02220 IPR011856 tRNA endonuclease-like domain superfamily LL3_02220 IPR011335 Restriction endonuclease type II-like LL3_02225 IPR029052 Metallo-dependent phosphatase-like LL3_02225 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type LL3_02232 IPR001796 Dihydrofolate reductase domain LL3_02232 IPR012259 Dihydrofolate reductase LL3_02232 IPR024072 Dihydrofolate reductase-like domain superfamily LL3_02232 IPR017925 Dihydrofolate reductase conserved site LL3_02233 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain LL3_02233 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily LL3_02233 IPR000398 Thymidylate synthase LL3_02233 IPR020940 Thymidylate synthase, active site LL3_02239 IPR029054 dUTPase-like LL3_02239 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase LL3_02239 IPR036157 dUTPase-like superfamily LL3_02239 IPR033704 dUTPase, trimeric LL3_02241 IPR036249 Thioredoxin-like superfamily LL3_02241 IPR013766 Thioredoxin domain LL3_02243 IPR000358 Ribonucleotide reductase small subunit family LL3_02243 IPR009078 Ferritin-like superfamily LL3_02243 IPR012348 Ribonucleotide reductase-like LL3_02243 IPR030475 Ribonucleotide reductase small subunit, acitve site LL3_02243 IPR033909 Ribonucleotide reductase small subunit LL3_02243 IPR026494 Ribonucleoside reductase subunit beta, NrdF LL3_02246 IPR003615 HNH nuclease LL3_02247 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal LL3_02247 IPR003586 Hint domain C-terminal LL3_02247 IPR004860 Homing endonuclease, LAGLIDADG LL3_02247 IPR004042 Intein DOD homing endonuclease LL3_02247 IPR006141 Intein N-terminal splicing region LL3_02247 IPR000788 Ribonucleotide reductase large subunit, C-terminal LL3_02247 IPR039718 Ribonucleoside-diphosphate reductase large subunit LL3_02247 IPR036844 Hint domain superfamily LL3_02247 IPR027434 Homing endonuclease LL3_02247 IPR006142 Intein LL3_02247 IPR030934 Intein C-terminal splicing region LL3_02247 IPR013509 Ribonucleotide reductase large subunit, N-terminal LL3_02247 IPR013554 Ribonucleotide reductase N-terminal LL3_02247 IPR003587 Hint domain N-terminal LL3_02248 IPR013321 Arc-type ribbon-helix-helix LL3_02261 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_02261 IPR018117 DNA methylase, C-5 cytosine-specific, active site LL3_02261 IPR031303 DNA methylase, C-5 cytosine-specific, conserved site LL3_02261 IPR001525 C-5 cytosine methyltransferase LL3_02262 IPR002941 DNA methylase N-4/N-6 LL3_02262 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_02262 IPR001091 Restriction/modification DNA-methylase LL3_02262 IPR017985 DNA methylase, N-4 cytosine-specific, conserved site LL3_02263 IPR036412 HAD-like superfamily LL3_02263 IPR010708 5'(3')-deoxyribonucleotidase LL3_02263 IPR023214 HAD superfamily LL3_02264 IPR039430 Thymidylate kinase-like domain LL3_02264 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02266 IPR018591 YorP protein LL3_02266 IPR038027 YorP domain superfamily LL3_02267 IPR036908 RlpA-like domain superfamily LL3_02267 IPR010611 3D domain LL3_02268 IPR004013 PHP domain LL3_02268 IPR003141 Polymerase/histidinol phosphatase, N-terminal LL3_02268 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain LL3_02268 IPR016195 Polymerase/histidinol phosphatase-like LL3_02268 IPR004805 DNA polymerase III, alpha subunit LL3_02268 IPR040982 DNA polymerase III alpha subunit finger domain LL3_02268 IPR029460 DNA polymerase, helix-hairpin-helix motif LL3_02269 IPR041122 RecJ, OB domain LL3_02269 IPR004610 Bacterial RecJ exonuclease LL3_02269 IPR038763 DHH phosphoesterase superfamily LL3_02269 IPR001667 DDH domain LL3_02270 IPR036977 DNA Primase, CHC2-type zinc finger LL3_02270 IPR016622 Bacteriophage SP-beta, YorJ LL3_02271 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily LL3_02271 IPR007694 DNA helicase, DnaB-like, C-terminal LL3_02271 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal LL3_02271 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02277 IPR012334 Pectin lyase fold LL3_02277 IPR006626 Parallel beta-helix repeat LL3_02277 IPR039448 Right handed beta helix domain LL3_02277 IPR011050 Pectin lyase fold/virulence factor LL3_02278 IPR038128 Poly-gamma-glutamate hydrolase superfamily LL3_02278 IPR008585 Poly-gamma-glutamate hydrolase LL3_02284 IPR036590 SOS response associated peptidase-like LL3_02284 IPR003738 SOS response associated peptidase (SRAP) LL3_02285 IPR012310 DNA ligase, ATP-dependent, central LL3_02290 IPR025621 YoqO-like protein LL3_02301 IPR019096 YopX protein LL3_02306 IPR001387 Cro/C1-type helix-turn-helix domain LL3_02306 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LL3_02308 IPR017642 DNA sulphur modification protein DndB LL3_02325 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LL3_02325 IPR001387 Cro/C1-type helix-turn-helix domain LL3_02326 IPR002656 Acyltransferase 3 LL3_02329 IPR014054 Bacteriophage regulatory protein, Rha family LL3_02329 IPR005039 Antirepressor protein, C-terminal LL3_02330 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02330 IPR005751 ATP-dependent DNA helicase PcrA LL3_02330 IPR013986 DExx box DNA helicase domain superfamily LL3_02330 IPR000212 DNA helicase, UvrD/REP type LL3_02330 IPR014017 UvrD-like DNA helicase, C-terminal LL3_02330 IPR034739 UvrD/AddA helicase, N-terminal LL3_02330 IPR014016 UvrD-like helicase, ATP-binding domain LL3_02340 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily LL3_02340 IPR020816 Histone-like DNA-binding protein, conserved site LL3_02340 IPR000119 Histone-like DNA-binding protein LL3_02341 IPR018600 Bacillus phage SPbeta, YonK LL3_02341 IPR037261 YonK superfamily LL3_02345 IPR004921 Terminase large subunit, T4likevirus-type LL3_02345 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02365 IPR004107 Integrase, SAM-like, N-terminal LL3_02365 IPR010998 Integrase/recombinase, N-terminal LL3_02365 IPR002104 Integrase, catalytic domain LL3_02365 IPR013762 Integrase-like, catalytic domain superfamily LL3_02365 IPR011010 DNA breaking-rejoining enzyme, catalytic core LL3_02372 IPR038675 Streptococcus phage 7201 Orf34, N-terminal domain superfamily LL3_02372 IPR008841 Siphovirus-type tail component LL3_02373 IPR010572 Prophage tail endopeptidase LL3_02375 IPR006626 Parallel beta-helix repeat LL3_02375 IPR024535 Pectate lyase superfamily protein LL3_02375 IPR012334 Pectin lyase fold LL3_02375 IPR021865 Peptidase G2, IMC autoproteolytic cleavage domain LL3_02375 IPR011050 Pectin lyase fold/virulence factor LL3_02376 IPR003646 SH3-like domain, bacterial-type LL3_02376 IPR002502 N-acetylmuramoyl-L-alanine amidase domain LL3_02376 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily LL3_02380 IPR019734 Tetratricopeptide repeat LL3_02380 IPR011990 Tetratricopeptide-like helical domain superfamily LL3_02380 IPR013026 Tetratricopeptide repeat-containing domain LL3_02380 IPR040702 Response regulator aspartate phosphatase, N-terminal LL3_02381 IPR036775 DNA polymerase, Y-family, little finger domain superfamily LL3_02381 IPR017961 DNA polymerase, Y-family, little finger domain LL3_02381 IPR024728 DNA polymerase type-Y, HhH motif LL3_02381 IPR001126 UmuC domain LL3_02382 IPR024937 Domain X LL3_02382 IPR000477 Reverse transcriptase domain LL3_02383 IPR017961 DNA polymerase, Y-family, little finger domain LL3_02383 IPR024728 DNA polymerase type-Y, HhH motif LL3_02383 IPR036775 DNA polymerase, Y-family, little finger domain superfamily LL3_02383 IPR001126 UmuC domain LL3_02384 IPR014962 YolD-like protein LL3_02386 IPR014197 Sporulation protein YunB LL3_02388 IPR018958 Knr4/Smi1-like domain LL3_02389 IPR026834 LHH LL3_02389 IPR006829 LXG domain LL3_02390 IPR002071 Thermonuclease active site LL3_02390 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold LL3_02390 IPR035437 SNase-like, OB-fold superfamily LL3_02390 IPR008613 Excalibur calcium-binding domain LL3_02392 IPR006043 Xanthine/uracil/vitamin C permease LL3_02392 IPR006042 Xanthine/uracil permease LL3_02392 IPR017588 Uric acid permease UacT-like LL3_02393 IPR029057 Phosphoribosyltransferase-like LL3_02393 IPR010079 Xanthine phosphoribosyltransferase LL3_02393 IPR000836 Phosphoribosyltransferase domain LL3_02394 IPR001333 Peptidase M32, carboxypeptidase Taq LL3_02395 IPR014013 Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type LL3_02395 IPR006555 ATP-dependent helicase, C-terminal LL3_02395 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02397 IPR025413 YpzG-like protein LL3_02399 IPR004114 THUMP domain LL3_02399 IPR002052 DNA methylase, N-6 adenine-specific, conserved site LL3_02399 IPR000241 Putative RNA methylase domain LL3_02399 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_02400 IPR011229 Cell cycle protein GpsB LL3_02400 IPR019933 DivIVA domain LL3_02400 IPR007793 DivIVA family LL3_02401 IPR010697 YspA SLOG family LL3_02402 IPR012337 Ribonuclease H-like superfamily LL3_02402 IPR011990 Tetratricopeptide-like helical domain superfamily LL3_02402 IPR038720 YprB, ribonuclease H-like domain LL3_02403 IPR001650 Helicase, C-terminal LL3_02403 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02403 IPR011545 DEAD/DEAH box helicase domain LL3_02403 IPR018973 DEAD/DEAH-box helicase, putative LL3_02403 IPR014001 Helicase superfamily 1/2, ATP-binding domain LL3_02404 IPR011055 Duplicated hybrid motif LL3_02404 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 LL3_02405 IPR002068 Alpha crystallin/Hsp20 domain LL3_02405 IPR008978 HSP20-like chaperone LL3_02406 IPR025555 YppG-like protein LL3_02407 IPR025553 YppF-like protein LL3_02408 IPR023351 YppE-like superfamily LL3_02408 IPR014913 Protein of unknown function DUF1798 LL3_02411 IPR019658 Protein of unknown function DUF2515 LL3_02412 IPR011856 tRNA endonuclease-like domain superfamily LL3_02412 IPR004612 Holliday junction resolvase RecU LL3_02412 IPR011335 Restriction endonuclease type II-like LL3_02413 IPR036950 Penicillin binding protein transglycosylase domain LL3_02413 IPR013783 Immunoglobulin-like fold LL3_02413 IPR001264 Glycosyl transferase, family 51 LL3_02413 IPR001460 Penicillin-binding protein, transpeptidase LL3_02413 IPR036116 Fibronectin type III superfamily LL3_02413 IPR012338 Beta-lactamase/transpeptidase-like LL3_02413 IPR003961 Fibronectin type III LL3_02413 IPR023346 Lysozyme-like domain superfamily LL3_02415 IPR003265 HhH-GPD domain LL3_02415 IPR005759 Endonuclease III LL3_02415 IPR000445 Helix-hairpin-helix motif LL3_02415 IPR004035 Endonuclease III, iron-sulphur binding site LL3_02415 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif LL3_02415 IPR004036 Endonuclease III-like, conserved site-2 LL3_02415 IPR011257 DNA glycosylase LL3_02415 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal LL3_02416 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_02416 IPR006343 DnaD domain LL3_02416 IPR034829 DnaD-like domain superfamily LL3_02417 IPR012340 Nucleic acid-binding, OB-fold LL3_02417 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb LL3_02417 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type LL3_02417 IPR004522 Asparagine-tRNA ligase LL3_02417 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) LL3_02417 IPR006195 Aminoacyl-tRNA synthetase, class II LL3_02418 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_02418 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_02418 IPR015424 Pyridoxal phosphate-dependent transferase LL3_02418 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site LL3_02418 IPR004839 Aminotransferase, class I/classII LL3_02419 IPR041401 Domain of unknown function DUF5590 LL3_02419 IPR025711 PepSY domain LL3_02420 IPR012190 Uncharacterised conserved protein UCP036698, YpmA LL3_02422 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain LL3_02422 IPR013520 Exonuclease, RNase T/DNA polymerase III LL3_02422 IPR014013 Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type LL3_02422 IPR006935 Helicase/UvrB, N-terminal LL3_02422 IPR014001 Helicase superfamily 1/2, ATP-binding domain LL3_02422 IPR036397 Ribonuclease H superfamily LL3_02422 IPR012337 Ribonuclease H-like superfamily LL3_02422 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02422 IPR001650 Helicase, C-terminal LL3_02422 IPR006310 3'-5' exonuclease DinG LL3_02422 IPR006555 ATP-dependent helicase, C-terminal LL3_02424 IPR003190 Aspartate decarboxylase LL3_02424 IPR009010 Aspartate decarboxylase-like domain superfamily LL3_02425 IPR004821 Cytidyltransferase-like domain LL3_02425 IPR003721 Pantoate-beta-alanine ligase LL3_02425 IPR042176 Pantoate-beta-alanine ligase, C-terminal domain LL3_02425 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LL3_02426 IPR040442 Pyruvate kinase-like domain superfamily LL3_02426 IPR003700 Ketopantoate hydroxymethyltransferase LL3_02426 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily LL3_02427 IPR036390 Winged helix DNA-binding domain superfamily LL3_02427 IPR004409 Biotin operon repressor, helix-turn-helix domain LL3_02427 IPR004408 Biotin--acetyl-CoA-carboxylase ligase LL3_02427 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_02427 IPR008988 Transcriptional repressor, C-terminal LL3_02427 IPR003142 Biotin protein ligase, C-terminal LL3_02427 IPR030855 Bifunctional ligase/repressor BirA LL3_02427 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain LL3_02427 IPR013196 Helix-turn-helix, type 11 LL3_02428 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain LL3_02428 IPR002646 Poly A polymerase, head domain LL3_02428 IPR023068 CCA-adding enzyme, firmicutes LL3_02428 IPR032810 CCA-adding enzyme, C-terminal LL3_02429 IPR023881 N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA LL3_02429 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain LL3_02429 IPR001296 Glycosyl transferase, family 1 LL3_02430 IPR023842 Bacillithiol biosynthesis deacetylase, BshB1 LL3_02430 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related LL3_02430 IPR024078 Putative deacetylase LmbE-like domain superfamily LL3_02431 IPR011607 Methylglyoxal synthase-like domain LL3_02431 IPR004363 Methylglyoxal synthase LL3_02431 IPR018148 Methylglyoxal synthase, active site LL3_02431 IPR036914 Methylglyoxal synthase-like domain superfamily LL3_02432 IPR022663 Dihydrodipicolinate reductase, C-terminal LL3_02432 IPR022664 Dihydrodipicolinate reductase, conserved site LL3_02432 IPR000846 Dihydrodipicolinate reductase, N-terminal LL3_02432 IPR036291 NAD(P)-binding domain superfamily LL3_02432 IPR023940 Dihydrodipicolinate reductase LL3_02433 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core LL3_02433 IPR012359 NTP pyrophosphohydrolase MazG-related, YpjD LL3_02434 IPR003740 Uncharacterised membrane protein YitT LL3_02434 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal LL3_02434 IPR019264 Domain of unknown function DUF2179 LL3_02435 IPR011051 RmlC-like cupin domain superfamily LL3_02435 IPR017774 Bicupin, oxalate decarboxylase/oxidase LL3_02435 IPR006045 Cupin 1 LL3_02435 IPR014710 RmlC-like jelly roll fold LL3_02436 IPR014231 Sporulation protein YpjB LL3_02437 IPR009845 Protein of unknown function DUF1405 LL3_02438 IPR005798 Cytochrome b/b6, C-terminal LL3_02438 IPR009056 Cytochrome c-like domain LL3_02438 IPR036150 Cytochrome b/b6, C-terminal domain superfamily LL3_02438 IPR036909 Cytochrome c-like domain superfamily LL3_02438 IPR027387 Cytochrome b/b6-like domain superfamily LL3_02438 IPR012049 Menaquinone:cytochrome c reductase, cytochrome b/c subunit LL3_02439 IPR027387 Cytochrome b/b6-like domain superfamily LL3_02439 IPR016174 Di-haem cytochrome, transmembrane LL3_02439 IPR005797 Cytochrome b/b6, N-terminal LL3_02440 IPR017941 Rieske [2Fe-2S] iron-sulphur domain LL3_02440 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily LL3_02440 IPR014349 Rieske iron-sulphur protein LL3_02440 IPR006311 Twin-arginine translocation pathway, signal sequence LL3_02442 IPR038091 UPF0302, N-terminal domain superfamily LL3_02442 IPR027393 Virus scaffolding protein, C-terminal LL3_02442 IPR014957 IDEAL domain LL3_02442 IPR014963 Uncharacterised domain UPF0302, N-terminal LL3_02442 IPR011188 Uncharacterised protein family UPF0302 LL3_02443 IPR011990 Tetratricopeptide-like helical domain superfamily LL3_02443 IPR013026 Tetratricopeptide repeat-containing domain LL3_02443 IPR019734 Tetratricopeptide repeat LL3_02445 IPR001986 Enolpyruvate transferase domain LL3_02445 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta LL3_02445 IPR036968 Enolpyruvate transferase domain superfamily LL3_02445 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase LL3_02445 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site LL3_02446 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily LL3_02446 IPR003099 Prephenate dehydrogenase LL3_02446 IPR036291 NAD(P)-binding domain superfamily LL3_02446 IPR002912 ACT domain LL3_02447 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_02447 IPR004839 Aminotransferase, class I/classII LL3_02447 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site LL3_02447 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_02447 IPR015424 Pyridoxal phosphate-dependent transferase LL3_02447 IPR005861 Histidinol-phosphate aminotransferase family LL3_02448 IPR013785 Aldolase-type TIM barrel LL3_02448 IPR011060 Ribulose-phosphate binding barrel LL3_02448 IPR002028 Tryptophan synthase, alpha chain LL3_02448 IPR018204 Tryptophan synthase, alpha chain, active site LL3_02449 IPR006654 Tryptophan synthase, beta chain LL3_02449 IPR006653 Tryptophan synthase, beta chain, conserved site LL3_02449 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme LL3_02449 IPR023026 Tryptophan synthase beta chain/beta chain-like LL3_02449 IPR001926 Pyridoxal-phosphate dependent enzyme LL3_02450 IPR011060 Ribulose-phosphate binding barrel LL3_02450 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) LL3_02450 IPR013785 Aldolase-type TIM barrel LL3_02451 IPR011060 Ribulose-phosphate binding barrel LL3_02451 IPR013798 Indole-3-glycerol phosphate synthase LL3_02451 IPR001468 Indole-3-glycerol phosphate synthase, conserved site LL3_02451 IPR013785 Aldolase-type TIM barrel LL3_02452 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily LL3_02452 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily LL3_02452 IPR017459 Glycosyl transferase family 3, N-terminal domain LL3_02452 IPR000312 Glycosyl transferase, family 3 LL3_02452 IPR005940 Anthranilate phosphoribosyl transferase LL3_02453 IPR019999 Anthranilate synthase component I-like LL3_02453 IPR006805 Anthranilate synthase component I, N-terminal LL3_02453 IPR005256 Anthranilate synthase component I, PabB-like LL3_02453 IPR015890 Chorismate-utilising enzyme, C-terminal LL3_02453 IPR005801 ADC synthase LL3_02454 IPR008243 Chorismate mutase, AroH class LL3_02454 IPR035959 RutC-like superfamily LL3_02455 IPR030960 3-dehydroquinate synthase domain LL3_02455 IPR030963 3-dehydroquinate synthase family LL3_02455 IPR016037 3-dehydroquinate synthase AroB LL3_02456 IPR000453 Chorismate synthase LL3_02456 IPR035904 Chorismate synthase AroC superfamily LL3_02456 IPR020541 Chorismate synthase, conserved site LL3_02457 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal LL3_02457 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal LL3_02457 IPR000780 MCP methyltransferase, CheR-type LL3_02457 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_02458 IPR001564 Nucleoside diphosphate kinase LL3_02458 IPR023005 Nucleoside diphosphate kinase, active site LL3_02458 IPR036850 Nucleoside diphosphate kinase-like domain superfamily LL3_02458 IPR034907 Nucleoside diphosphate kinase-like domain LL3_02459 IPR033749 Polyprenyl synthetase, conserved site LL3_02459 IPR000092 Polyprenyl synthetase LL3_02459 IPR008949 Isoprenoid synthase domain superfamily LL3_02459 IPR014119 Heptaprenyl diphosphate synthase component II LL3_02460 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_02460 IPR004033 UbiE/COQ5 methyltransferase LL3_02460 IPR014122 Demethylmenaquinone methyltransferase LL3_02460 IPR023576 UbiE/COQ5 methyltransferase, conserved site LL3_02461 IPR009920 Heptaprenyl diphosphate synthase subunit 1 LL3_02462 IPR016031 Tryptophan RNA-binding attenuator protein-like domain superfamily LL3_02462 IPR023558 Tryptophan RNA-binding attenuator protein domain LL3_02462 IPR000824 Transcription attenuation protein MtrB LL3_02463 IPR020602 GTP cyclohydrolase I domain LL3_02463 IPR018234 GTP cyclohydrolase I, conserved site LL3_02463 IPR001474 GTP cyclohydrolase I LL3_02464 IPR000119 Histone-like DNA-binding protein LL3_02464 IPR020816 Histone-like DNA-binding protein, conserved site LL3_02464 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily LL3_02465 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02465 IPR014201 Sporulation stage IV, protein A LL3_02467 IPR020076 Protein of unknown function DUF2768 LL3_02468 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily LL3_02468 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent LL3_02468 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal LL3_02468 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal LL3_02468 IPR013328 6-phosphogluconate dehydrogenase, domain 2 LL3_02468 IPR036291 NAD(P)-binding domain superfamily LL3_02469 IPR016484 GTP-binding protein EngA LL3_02469 IPR005225 Small GTP-binding protein domain LL3_02469 IPR031166 EngA-type guanine nucleotide-binding (G) domain LL3_02469 IPR015946 K homology domain-like, alpha/beta LL3_02469 IPR032859 GTPase Der, C-terminal KH-domain-like LL3_02469 IPR006073 GTP binding domain LL3_02469 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02470 IPR014617 Predicted membrane protein, Bacillus YphA type LL3_02471 IPR013785 Aldolase-type TIM barrel LL3_02471 IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent LL3_02471 IPR000262 FMN-dependent dehydrogenase LL3_02472 IPR012340 Nucleic acid-binding, OB-fold LL3_02472 IPR003029 S1 domain LL3_02472 IPR022967 RNA-binding domain, S1 LL3_02473 IPR011994 Cytidylate kinase domain LL3_02473 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02473 IPR003136 Cytidylate kinase LL3_02474 IPR035281 Protein of unknown function DUF5359 LL3_02475 IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal LL3_02475 IPR009875 PilZ domain LL3_02476 IPR014239 Spore germination YpeB LL3_02476 IPR025711 PepSY domain LL3_02477 IPR011105 Cell wall hydrolase, SleB LL3_02477 IPR002477 Peptidoglycan binding-like LL3_02477 IPR036365 PGBD-like superfamily LL3_02477 IPR036366 PGBD superfamily LL3_02477 IPR042047 Cell wall hydrolase SleB, domain 1 LL3_02477 IPR014224 Spore cortex-lytic enzyme SleB LL3_02478 IPR023596 Peptidase PrsW, archaeal/bacterial LL3_02478 IPR026898 Intramembrane metalloprotease PrsW LL3_02479 IPR036188 FAD/NAD(P)-binding domain superfamily LL3_02479 IPR023856 Bacillithiol biosynthesis thiol disulphide oxidoreductase, YpdA LL3_02480 IPR033922 NAD(P) binding domain of glutamate dehydrogenase LL3_02480 IPR036291 NAD(P)-binding domain superfamily LL3_02480 IPR014362 Glutamate dehydrogenase LL3_02480 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain LL3_02480 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal LL3_02480 IPR033524 Leu/Phe/Val dehydrogenases active site LL3_02480 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase LL3_02481 IPR008681 Negative regulator of genetic competence, MecA LL3_02481 IPR038471 MecA, C-terminal domain superfamily LL3_02482 IPR029052 Metallo-dependent phosphatase-like LL3_02482 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type LL3_02483 IPR020210 Uncharacterised protein family, YpbF, transmembrane LL3_02484 IPR036779 LysM domain superfamily LL3_02484 IPR018392 LysM domain LL3_02485 IPR003675 CAAX prenyl protease 2 LL3_02486 IPR011545 DEAD/DEAH box helicase domain LL3_02486 IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site LL3_02486 IPR004589 DNA helicase, ATP-dependent, RecQ type LL3_02486 IPR014001 Helicase superfamily 1/2, ATP-binding domain LL3_02486 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02486 IPR001650 Helicase, C-terminal LL3_02487 IPR029491 Helicase Helix-turn-helix domain LL3_02487 IPR008308 Uncharacterised conserved protein UCP021350 LL3_02487 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_02488 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain LL3_02488 IPR001080 3Fe-4S ferredoxin LL3_02490 IPR024529 ECF transporter, substrate-specific component LL3_02490 IPR025720 ECF transporter, Riboflavin transporter RibU LL3_02492 IPR002912 ACT domain LL3_02492 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain LL3_02492 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 LL3_02492 IPR006236 D-3-phosphoglycerate dehydrogenase LL3_02492 IPR029009 Allosteric substrate binding domain superfamily LL3_02492 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LL3_02492 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site LL3_02492 IPR036291 NAD(P)-binding domain superfamily LL3_02494 IPR013325 RNA polymerase sigma factor, region 2 LL3_02494 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 LL3_02494 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_02494 IPR007627 RNA polymerase sigma-70 region 2 LL3_02494 IPR039425 RNA polymerase sigma-70 like LL3_02494 IPR014284 RNA polymerase sigma-70 like domain LL3_02494 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site LL3_02494 IPR013324 RNA polymerase sigma factor, region 3/4-like LL3_02495 IPR041328 ResE, histidine kinase sensor domain LL3_02495 IPR003660 HAMP domain LL3_02495 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LL3_02495 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LL3_02495 IPR000014 PAS domain LL3_02495 IPR005467 Histidine kinase domain LL3_02495 IPR013767 PAS fold LL3_02495 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LL3_02495 IPR003594 Histidine kinase/HSP90-like ATPase LL3_02495 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_02495 IPR035965 PAS domain superfamily LL3_02496 IPR001867 OmpR/PhoB-type DNA-binding domain LL3_02496 IPR039420 Transcriptional regulatory protein WalR-like LL3_02496 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_02496 IPR011006 CheY-like superfamily LL3_02496 IPR001789 Signal transduction response regulator, receiver domain LL3_02497 IPR002541 Cytochrome c assembly protein LL3_02497 IPR017562 Cytochrome c-type biogenesis protein CcsA LL3_02498 IPR007816 ResB-like domain LL3_02499 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant LL3_02499 IPR017937 Thioredoxin, conserved site LL3_02499 IPR036249 Thioredoxin-like superfamily LL3_02499 IPR013766 Thioredoxin domain LL3_02499 IPR023555 Thiol-disulphide oxidoreductase ResA LL3_02500 IPR020103 Pseudouridine synthase, catalytic domain superfamily LL3_02500 IPR002942 RNA-binding S4 domain LL3_02500 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site LL3_02500 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F LL3_02500 IPR006145 Pseudouridine synthase, RsuA/RluA LL3_02500 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain LL3_02500 IPR036986 RNA-binding S4 domain superfamily LL3_02501 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain LL3_02502 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain LL3_02503 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal LL3_02503 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal LL3_02503 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A LL3_02503 IPR012338 Beta-lactamase/transpeptidase-like LL3_02504 IPR025013 Protein of unknown function DUF3907 LL3_02505 IPR036390 Winged helix DNA-binding domain superfamily LL3_02505 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_02505 IPR005234 Chromosome segregation/condensation protein ScpB LL3_02506 IPR003768 Segregation and condensation protein A LL3_02506 IPR023093 ScpA-like, C-terminal LL3_02507 IPR005500 Protein of unknown function DUF309 LL3_02507 IPR023203 TTHA0068-like superfamily LL3_02508 IPR016181 Acyl-CoA N-acyltransferase LL3_02508 IPR000182 GNAT domain LL3_02509 IPR036467 Lumazine/riboflavin synthase superfamily LL3_02509 IPR034964 Lumazine synthase LL3_02509 IPR002180 Lumazine/riboflavin synthase LL3_02510 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB LL3_02510 IPR032677 GTP cyclohydrolase II LL3_02510 IPR000926 GTP cyclohydrolase II, RibA LL3_02510 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily LL3_02510 IPR016299 Riboflavin biosynthesis protein RibBA LL3_02510 IPR036144 RibA-like superfamily LL3_02511 IPR001783 Lumazine-binding protein LL3_02511 IPR026017 Lumazine-binding domain LL3_02511 IPR017938 Riboflavin synthase-like beta-barrel LL3_02511 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily LL3_02512 IPR016192 APOBEC/CMP deaminase, zinc-binding LL3_02512 IPR024072 Dihydrofolate reductase-like domain superfamily LL3_02512 IPR004794 Riboflavin biosynthesis protein RibD LL3_02512 IPR011549 Riboflavin-specific deaminase, C-terminal LL3_02512 IPR016193 Cytidine deaminase-like LL3_02512 IPR002125 Cytidine and deoxycytidylate deaminase domain LL3_02512 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal LL3_02515 IPR000223 Peptidase S26A, signal peptidase I LL3_02515 IPR036286 LexA/Signal peptidase-like superfamily LL3_02515 IPR019756 Peptidase S26A, signal peptidase I, serine active site LL3_02515 IPR019757 Peptidase S26A, signal peptidase I, lysine active site LL3_02515 IPR019758 Peptidase S26A, signal peptidase I, conserved site LL3_02515 IPR019533 Peptidase S26 LL3_02518 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase LL3_02518 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site LL3_02518 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain LL3_02518 IPR029000 Cyclophilin-like domain superfamily LL3_02520 IPR009343 Protein of unknown function DUF1002 LL3_02521 IPR002986 Diaminopimelate decarboxylase, LysA LL3_02521 IPR029066 PLP-binding barrel LL3_02521 IPR000183 Ornithine/DAP/Arg decarboxylase LL3_02521 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site LL3_02521 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal LL3_02521 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal LL3_02521 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site LL3_02521 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal LL3_02522 IPR004995 Bacillus/Clostridium Ger spore germination protein LL3_02523 IPR025914 Stage V sporulation protein AE LL3_02524 IPR014204 Sporulation stage V, protein AE LL3_02524 IPR005562 SpoVA LL3_02525 IPR038369 Stage V sporulation AD superfamily LL3_02525 IPR010894 Stage V sporulation AD LL3_02525 IPR016039 Thiolase-like LL3_02526 IPR005562 SpoVA LL3_02526 IPR014203 Sporulation stage V, protein AC LL3_02527 IPR020144 Stage V sporulation protein AB LL3_02528 IPR021997 Stage V sporulation protein AA LL3_02528 IPR038548 Stage V sporulation protein AA, N-terminal domain superfamily LL3_02529 IPR000943 RNA polymerase sigma-70 LL3_02529 IPR014284 RNA polymerase sigma-70 like domain LL3_02529 IPR014322 RNA polymerase sigma-B/F/G type LL3_02529 IPR014236 RNA polymerase sigma-F type LL3_02529 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_02529 IPR013324 RNA polymerase sigma factor, region 3/4-like LL3_02529 IPR007627 RNA polymerase sigma-70 region 2 LL3_02529 IPR007630 RNA polymerase sigma-70 region 4 LL3_02529 IPR013325 RNA polymerase sigma factor, region 2 LL3_02529 IPR007624 RNA polymerase sigma-70 region 3 LL3_02530 IPR010194 Anti-sigma F factor LL3_02530 IPR003594 Histidine kinase/HSP90-like ATPase LL3_02530 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_02531 IPR036513 STAS domain superfamily LL3_02531 IPR002645 STAS domain LL3_02531 IPR014237 Anti-sigma F factor antagonist LL3_02531 IPR003658 Anti-sigma factor antagonist LL3_02532 IPR012338 Beta-lactamase/transpeptidase-like LL3_02532 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A LL3_02532 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal LL3_02532 IPR015956 Penicillin-binding protein, C-terminal domain superfamily LL3_02532 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal LL3_02532 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily LL3_02533 IPR011268 Purine nucleoside phosphorylase LL3_02533 IPR011270 Purine nucleoside phosphorylase I, inosine/guanosine-specific LL3_02533 IPR035994 Nucleoside phosphorylase superfamily LL3_02533 IPR018099 Purine phosphorylase, family 2, conserved site LL3_02533 IPR000845 Nucleoside phosphorylase domain LL3_02534 IPR024052 Phosphopentomutase DeoB cap domain superfamily LL3_02534 IPR006124 Metalloenzyme LL3_02534 IPR010045 Phosphopentomutase LL3_02534 IPR017850 Alkaline-phosphatase-like, core domain superfamily LL3_02535 IPR002104 Integrase, catalytic domain LL3_02535 IPR011932 Tyrosine recombinase XerD LL3_02535 IPR004107 Integrase, SAM-like, N-terminal LL3_02535 IPR023009 Tyrosine recombinase XerC/XerD LL3_02535 IPR013762 Integrase-like, catalytic domain superfamily LL3_02535 IPR011010 DNA breaking-rejoining enzyme, catalytic core LL3_02535 IPR010998 Integrase/recombinase, N-terminal LL3_02536 IPR025321 Protein of unknown function DUF4227 LL3_02537 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_02537 IPR002481 Ferric-uptake regulator LL3_02537 IPR036390 Winged helix DNA-binding domain superfamily LL3_02538 IPR002798 Stage II sporulation protein M-like LL3_02538 IPR014196 Stage II sporulation protein M LL3_02541 IPR036291 NAD(P)-binding domain superfamily LL3_02541 IPR001891 Malic oxidoreductase LL3_02541 IPR012302 Malic enzyme, NAD-binding LL3_02541 IPR037062 Malic enzyme, N-terminal domain superfamily LL3_02541 IPR002912 ACT domain LL3_02541 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain LL3_02541 IPR015884 Malic enzyme, conserved site LL3_02541 IPR012301 Malic enzyme, N-terminal domain LL3_02542 IPR004770 Na+/H+ antiporter NhaC LL3_02542 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal LL3_02543 IPR004708 Aspartate ammonia-lyase LL3_02543 IPR008948 L-Aspartase-like LL3_02543 IPR022761 Fumarate lyase, N-terminal LL3_02543 IPR024083 Fumarase/histidase, N-terminal LL3_02543 IPR000362 Fumarate lyase family LL3_02543 IPR020557 Fumarate lyase, conserved site LL3_02543 IPR018951 Fumarase C, C-terminal LL3_02544 IPR006034 Asparaginase/glutaminase-like LL3_02544 IPR006033 Type I L-asparaginase family LL3_02544 IPR036152 Asparaginase/glutaminase-like superfamily LL3_02544 IPR020827 Asparaginase/glutaminase, active site 1 LL3_02544 IPR037152 L-asparaginase, N-terminal domain superfamily LL3_02544 IPR040919 Asparaginase/glutaminase, C-terminal LL3_02544 IPR027473 L-asparaginase, C-terminal LL3_02544 IPR041725 Type I (cytosolic) L-asparaginase LL3_02544 IPR027474 L-asparaginase, N-terminal LL3_02544 IPR027475 Asparaginase/glutaminase, active site 2 LL3_02545 IPR001387 Cro/C1-type helix-turn-helix domain LL3_02545 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LL3_02546 IPR005287 Conserved hypothetical protein CHP00375 LL3_02546 IPR016195 Polymerase/histidinol phosphatase-like LL3_02546 IPR010994 RuvA domain 2-like LL3_02547 IPR020084 NUDIX hydrolase, conserved site LL3_02547 IPR015797 NUDIX hydrolase-like domain superfamily LL3_02547 IPR020476 NUDIX hydrolase LL3_02547 IPR000086 NUDIX hydrolase domain LL3_02548 IPR025177 Cell division inhibitor MciZ LL3_02549 IPR036812 NADP-dependent oxidoreductase domain superfamily LL3_02549 IPR023210 NADP-dependent oxidoreductase domain LL3_02549 IPR020471 Aldo/keto reductase LL3_02551 IPR029058 Alpha/Beta hydrolase fold LL3_02551 IPR022742 Serine aminopeptidase, S33 LL3_02552 IPR020157 Uncharacterised protein family YqkC LL3_02553 IPR000361 FeS cluster biogenesis LL3_02553 IPR035903 HesB-like domain superfamily LL3_02554 IPR007344 GrpB/Dephospho-CoA kinase LL3_02554 IPR016181 Acyl-CoA N-acyltransferase LL3_02554 IPR000182 GNAT domain LL3_02556 IPR017255 Acetyltransferase, GNAT, predicted LL3_02556 IPR016181 Acyl-CoA N-acyltransferase LL3_02556 IPR000182 GNAT domain LL3_02557 IPR036775 DNA polymerase, Y-family, little finger domain superfamily LL3_02557 IPR017961 DNA polymerase, Y-family, little finger domain LL3_02557 IPR001126 UmuC domain LL3_02557 IPR022880 DNA polymerase IV LL3_02559 IPR025546 YqzH-like protein LL3_02560 IPR002549 Transmembrane protein TqsA-like LL3_02562 IPR006083 Phosphoribulokinase/uridine kinase LL3_02562 IPR004566 Pantothenate kinase LL3_02562 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02563 IPR011780 D-serine ammonia-lyase LL3_02563 IPR001926 Pyridoxal-phosphate dependent enzyme LL3_02563 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site LL3_02563 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme LL3_02564 IPR020904 Short-chain dehydrogenase/reductase, conserved site LL3_02564 IPR002347 Short-chain dehydrogenase/reductase SDR LL3_02564 IPR036291 NAD(P)-binding domain superfamily LL3_02565 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like LL3_02565 IPR001279 Metallo-beta-lactamase LL3_02566 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain LL3_02566 IPR000304 Pyrroline-5-carboxylate reductase LL3_02566 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily LL3_02566 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal LL3_02566 IPR036291 NAD(P)-binding domain superfamily LL3_02568 IPR005119 LysR, substrate-binding LL3_02568 IPR000847 Transcription regulator HTH, LysR LL3_02568 IPR037400 Malonate utilization transcriptional regulator, PBP2 domain LL3_02568 IPR036390 Winged helix DNA-binding domain superfamily LL3_02568 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_02570 IPR013785 Aldolase-type TIM barrel LL3_02570 IPR023663 NADPH dehydrogenase LL3_02570 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal LL3_02571 IPR029058 Alpha/Beta hydrolase fold LL3_02571 IPR022742 Serine aminopeptidase, S33 LL3_02572 IPR018264 Ribosomal protein L33, conserved site LL3_02572 IPR011332 Zinc-binding ribosomal protein LL3_02572 IPR038584 Ribosomal protein L33 superfamily LL3_02572 IPR001705 Ribosomal protein L33 LL3_02573 IPR013471 Ribonuclease Z/BN LL3_02573 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like LL3_02573 IPR001279 Metallo-beta-lactamase LL3_02574 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal LL3_02574 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding LL3_02574 IPR036291 NAD(P)-binding domain superfamily LL3_02574 IPR019796 Glucose-6-phosphate dehydrogenase, active site LL3_02574 IPR001282 Glucose-6-phosphate dehydrogenase LL3_02575 IPR006183 6-phosphogluconate dehydrogenase LL3_02575 IPR013328 6-phosphogluconate dehydrogenase, domain 2 LL3_02575 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding LL3_02575 IPR036291 NAD(P)-binding domain superfamily LL3_02575 IPR006184 6-phosphogluconate-binding site LL3_02575 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating LL3_02575 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily LL3_02575 IPR006114 6-phosphogluconate dehydrogenase, C-terminal LL3_02576 IPR001126 UmuC domain LL3_02576 IPR036775 DNA polymerase, Y-family, little finger domain superfamily LL3_02576 IPR022880 DNA polymerase IV LL3_02576 IPR017961 DNA polymerase, Y-family, little finger domain LL3_02576 IPR024728 DNA polymerase type-Y, HhH motif LL3_02578 IPR028055 Membrane insertase YidC/Oxa1, C-terminal LL3_02578 IPR023060 Membrane insertase YidC/YidC1/YidC2, Firmicutes LL3_02578 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 LL3_02579 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site LL3_02579 IPR036264 Bacterial exopeptidase dimerisation domain LL3_02579 IPR010162 Peptidase M20B, peptidase T-like LL3_02579 IPR002933 Peptidase M20 LL3_02579 IPR011650 Peptidase M20, dimerisation domain LL3_02579 IPR008007 Peptidase M42 LL3_02580 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal LL3_02580 IPR029045 ClpP/crotonase-like domain superfamily LL3_02580 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit LL3_02580 IPR034733 Acetyl-CoA carboxylase LL3_02580 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal LL3_02581 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase LL3_02581 IPR017515 Methylmalonyl-CoA epimerase LL3_02581 IPR037523 Vicinal oxygen chelate (VOC) domain LL3_02581 IPR018146 Glyoxalase I, conserved site LL3_02582 IPR038063 L,D-transpeptidase catalytic domain-like LL3_02582 IPR005490 L,D-transpeptidase catalytic domain LL3_02583 IPR021062 Putative aromatic acid exporter, C-terminal LL3_02583 IPR038323 Putative aromatic acid exporter, C-terminal domain superfamily LL3_02583 IPR010343 Aromatic acid exporter family member 1 LL3_02584 IPR003439 ABC transporter-like LL3_02584 IPR017871 ABC transporter, conserved site LL3_02584 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02584 IPR003593 AAA+ ATPase domain LL3_02584 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type LL3_02585 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LL3_02585 IPR035906 MetI-like superfamily LL3_02585 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain LL3_02586 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF LL3_02586 IPR018313 Solute-binding protein family 3, conserved site LL3_02586 IPR001320 Ionotropic glutamate receptor LL3_02587 IPR036249 Thioredoxin-like superfamily LL3_02587 IPR009474 Putative bacilliredoxin, YphP/YqiW family LL3_02588 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily LL3_02588 IPR001206 Diacylglycerol kinase, catalytic domain LL3_02588 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal LL3_02588 IPR005218 Diacylglycerol/lipid kinase LL3_02589 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain LL3_02589 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site LL3_02589 IPR000089 Biotin/lipoyl attachment LL3_02589 IPR011053 Single hybrid motif LL3_02589 IPR004167 Peripheral subunit-binding domain LL3_02589 IPR036625 E3-binding domain superfamily LL3_02589 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily LL3_02590 IPR033248 Transketolase, C-terminal domain LL3_02590 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II LL3_02590 IPR005475 Transketolase-like, pyrimidine-binding domain LL3_02590 IPR029061 Thiamin diphosphate-binding fold LL3_02591 IPR029061 Thiamin diphosphate-binding fold LL3_02591 IPR001017 Dehydrogenase, E1 component LL3_02592 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site LL3_02592 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LL3_02592 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I LL3_02592 IPR006258 Dihydrolipoamide dehydrogenase LL3_02592 IPR036188 FAD/NAD(P)-binding domain superfamily LL3_02592 IPR023753 FAD/NAD(P)-binding domain LL3_02592 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily LL3_02593 IPR000890 Aliphatic acid kinase, short-chain LL3_02593 IPR023865 Aliphatic acid kinase, short-chain, conserved site LL3_02593 IPR011245 Butyrate kinase LL3_02594 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal LL3_02594 IPR033524 Leu/Phe/Val dehydrogenases active site LL3_02594 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase LL3_02594 IPR036291 NAD(P)-binding domain superfamily LL3_02594 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain LL3_02594 IPR016211 Glutamate/phenylalanine/leucine/valine dehydrogenase, bacterial/archaeal LL3_02595 IPR012147 Phosphate acetyl/butyryltransferase LL3_02595 IPR014079 Phosphate butyryltransferase LL3_02595 IPR002505 Phosphate acetyl/butaryl transferase LL3_02596 IPR003593 AAA+ ATPase domain LL3_02596 IPR035965 PAS domain superfamily LL3_02596 IPR013767 PAS fold LL3_02596 IPR002078 RNA polymerase sigma factor 54 interaction domain LL3_02596 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 LL3_02596 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 LL3_02596 IPR009057 Homeobox-like domain superfamily LL3_02596 IPR002197 DNA binding HTH domain, Fis-type LL3_02596 IPR036291 NAD(P)-binding domain superfamily LL3_02596 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02596 IPR000014 PAS domain LL3_02596 IPR025944 Sigma-54 interaction domain, conserved site LL3_02597 IPR020138 Uncharacterised protein family YqzF LL3_02598 IPR039556 ICL/PEPM domain LL3_02598 IPR040442 Pyruvate kinase-like domain superfamily LL3_02598 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily LL3_02598 IPR012695 2-methylisocitrate lyase LL3_02598 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site LL3_02599 IPR005656 MmgE/PrpD LL3_02599 IPR042188 MmgE/PrpD superfamily, domain 2 LL3_02599 IPR042183 MmgE/PrpD superfamily, domain 1 LL3_02599 IPR036148 MmgE/PrpD superfamily LL3_02599 IPR012705 2-methylcitrate dehydratase PrpD LL3_02600 IPR019810 Citrate synthase active site LL3_02600 IPR024176 Citrate synthase, bacterial-type LL3_02600 IPR016143 Citrate synthase-like, small alpha subdomain LL3_02600 IPR016142 Citrate synthase-like, large alpha subdomain LL3_02600 IPR002020 Citrate synthase LL3_02600 IPR036969 Citrate synthase superfamily LL3_02601 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain LL3_02601 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal LL3_02601 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily LL3_02601 IPR006089 Acyl-CoA dehydrogenase, conserved site LL3_02601 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily LL3_02601 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal LL3_02601 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal LL3_02602 IPR036291 NAD(P)-binding domain superfamily LL3_02602 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal LL3_02602 IPR022694 3-hydroxyacyl-CoA dehydrogenase LL3_02602 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site LL3_02602 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding LL3_02602 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily LL3_02602 IPR013328 6-phosphogluconate dehydrogenase, domain 2 LL3_02603 IPR020616 Thiolase, N-terminal LL3_02603 IPR020617 Thiolase, C-terminal LL3_02603 IPR020610 Thiolase, active site LL3_02603 IPR020615 Thiolase, acyl-enzyme intermediate active site LL3_02603 IPR016039 Thiolase-like LL3_02603 IPR002155 Thiolase LL3_02603 IPR020613 Thiolase, conserved site LL3_02604 IPR030395 Glycerophosphodiester phosphodiesterase domain LL3_02604 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily LL3_02605 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain LL3_02612 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal LL3_02612 IPR013785 Aldolase-type TIM barrel LL3_02613 IPR019618 Spore germination protein GerPA/GerPF LL3_02614 IPR019618 Spore germination protein GerPA/GerPF LL3_02615 IPR029066 PLP-binding barrel LL3_02615 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site LL3_02615 IPR001608 Alanine racemase, N-terminal LL3_02615 IPR011079 Alanine racemase, C-terminal LL3_02615 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal LL3_02615 IPR000821 Alanine racemase LL3_02617 IPR011006 CheY-like superfamily LL3_02617 IPR016032 Signal transduction response regulator, C-terminal effector LL3_02617 IPR001789 Signal transduction response regulator, receiver domain LL3_02617 IPR014879 Sporulation initiation factor Spo0A, C-terminal LL3_02617 IPR012052 Sporulation transcription factor Spo0A LL3_02617 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_02618 IPR001478 PDZ domain LL3_02618 IPR014219 Peptidase S55, sporulation stage IV, protein B LL3_02618 IPR009003 Peptidase S1, PA clan LL3_02618 IPR041489 PDZ domain 6 LL3_02618 IPR036034 PDZ superfamily LL3_02618 IPR008763 Peptidase S55, SpoIVB LL3_02619 IPR038729 Rad50/SbcC-type AAA domain LL3_02619 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02619 IPR004604 DNA recombination/repair protein RecN LL3_02620 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_02620 IPR001669 Arginine repressor LL3_02620 IPR036251 Arginine repressor, C-terminal domain superfamily LL3_02620 IPR020900 Arginine repressor, DNA-binding domain LL3_02620 IPR036390 Winged helix DNA-binding domain superfamily LL3_02620 IPR020899 Arginine repressor, C-terminal LL3_02621 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_02621 IPR036986 RNA-binding S4 domain superfamily LL3_02621 IPR002942 RNA-binding S4 domain LL3_02621 IPR004538 Haemolysin A /rRNA methyltransferase TlyA LL3_02621 IPR002877 Ribosomal RNA methyltransferase FtsJ domain LL3_02622 IPR029061 Thiamin diphosphate-binding fold LL3_02622 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II LL3_02622 IPR005475 Transketolase-like, pyrimidine-binding domain LL3_02622 IPR020826 Transketolase binding site LL3_02622 IPR033248 Transketolase, C-terminal domain LL3_02622 IPR005474 Transketolase, N-terminal LL3_02622 IPR005477 Deoxyxylulose-5-phosphate synthase LL3_02623 IPR008949 Isoprenoid synthase domain superfamily LL3_02623 IPR033749 Polyprenyl synthetase, conserved site LL3_02623 IPR000092 Polyprenyl synthetase LL3_02624 IPR037004 Exonuclease VII, small subunit superfamily LL3_02624 IPR003761 Exonuclease VII, small subunit LL3_02625 IPR020579 Exonuclease VII, large subunit, C-terminal LL3_02625 IPR003753 Exonuclease VII, large subunit LL3_02625 IPR025824 OB-fold nucleic acid binding domain LL3_02626 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LL3_02626 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site LL3_02626 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase LL3_02626 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LL3_02626 IPR036291 NAD(P)-binding domain superfamily LL3_02627 IPR006027 NusB/RsmB/TIM44 LL3_02627 IPR035926 NusB-like superfamily LL3_02627 IPR011605 NusB antitermination factor LL3_02629 IPR005531 Alkaline shock protein Asp23 LL3_02630 IPR005481 Biotin carboxylase-like, N-terminal domain LL3_02630 IPR011764 Biotin carboxylation domain LL3_02630 IPR005482 Biotin carboxylase, C-terminal LL3_02630 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain LL3_02630 IPR016185 Pre-ATP-grasp domain superfamily LL3_02630 IPR011054 Rudiment single hybrid motif LL3_02630 IPR011761 ATP-grasp fold LL3_02630 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase LL3_02631 IPR011053 Single hybrid motif LL3_02631 IPR001249 Acetyl-CoA biotin carboxyl carrier LL3_02631 IPR000089 Biotin/lipoyl attachment LL3_02631 IPR001882 Biotin-binding site LL3_02632 IPR024232 Stage III sporulation protein AH-like LL3_02632 IPR038503 Stage III sporulation protein AH-like superfamily LL3_02633 IPR014195 Sporulation stage III, protein AG LL3_02634 IPR014245 Sporulation stage III, protein AF LL3_02635 IPR014194 Sporulation stage III, protein AE LL3_02636 IPR014211 Stage III sporulation protein AD LL3_02636 IPR025664 Stage III sporulation protein AC/AD family LL3_02637 IPR009570 Stage III sporulation protein AC LL3_02637 IPR025664 Stage III sporulation protein AC/AD family LL3_02638 IPR014198 Stage III sporulation protein AB LL3_02639 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02639 IPR014217 Sporulation stage III, protein AA LL3_02639 IPR003593 AAA+ ATPase domain LL3_02640 IPR020390 Uncharacterised protein family YqhV LL3_02641 IPR014722 Ribosomal protein L2, domain 2 LL3_02641 IPR020599 Translation elongation factor P/YeiP LL3_02641 IPR015365 Elongation factor P, C-terminal LL3_02641 IPR013852 Translation elongation factor P/YeiP, conserved site LL3_02641 IPR001059 Translation elongation factor P/YeiP, central LL3_02641 IPR012340 Nucleic acid-binding, OB-fold LL3_02641 IPR011768 Translation elongation factor P LL3_02641 IPR008991 Translation protein SH3-like domain superfamily LL3_02641 IPR013185 Translation elongation factor, KOW-like LL3_02642 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site LL3_02642 IPR001714 Peptidase M24, methionine aminopeptidase LL3_02642 IPR000994 Peptidase M24 LL3_02642 IPR000587 Creatinase, N-terminal LL3_02642 IPR036005 Creatinase/aminopeptidase-like LL3_02642 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal LL3_02643 IPR024563 Uncharacterised protein family YqhR LL3_02644 IPR010787 Protein of unknown function DUF1385 LL3_02646 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase LL3_02646 IPR002641 Patatin-like phospholipase domain LL3_02647 IPR001367 Iron dependent repressor, metal binding and dimerisation domain LL3_02647 IPR022689 Iron dependent repressor LL3_02647 IPR022687 DTXR-type HTH domain LL3_02647 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_02647 IPR036390 Winged helix DNA-binding domain superfamily LL3_02647 IPR022897 HTH-type transcription regulator MntR LL3_02647 IPR036421 Iron dependent repressor, metal binding and dimerisation domain superfamily LL3_02648 IPR024898 Octanoyltransferase LipM LL3_02648 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain LL3_02650 IPR036873 Rhodanese-like domain superfamily LL3_02650 IPR001763 Rhodanese-like domain LL3_02651 IPR020581 Glycine cleavage system P protein LL3_02651 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_02651 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_02651 IPR023012 Probable glycine dehydrogenase (decarboxylating) subunit 2 LL3_02651 IPR015424 Pyridoxal phosphate-dependent transferase LL3_02652 IPR020581 Glycine cleavage system P protein LL3_02652 IPR023010 Probable glycine dehydrogenase (decarboxylating) subunit 1 LL3_02652 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_02652 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_02652 IPR015424 Pyridoxal phosphate-dependent transferase LL3_02653 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain LL3_02653 IPR028896 Aminomethyltransferase-like LL3_02653 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 LL3_02653 IPR022903 Glycine cleavage system T protein, bacteria LL3_02653 IPR006223 Glycine cleavage system T protein LL3_02653 IPR006222 Aminomethyltransferase, folate-binding domain LL3_02653 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal LL3_02654 IPR014001 Helicase superfamily 1/2, ATP-binding domain LL3_02654 IPR001650 Helicase, C-terminal LL3_02654 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02654 IPR038718 SNF2-like, N-terminal domain superfamily LL3_02654 IPR000330 SNF2-related, N-terminal domain LL3_02655 IPR024562 Uncharacterised protein family YqhG LL3_02657 IPR010981 SinR repressor/SinI anti-repressor, dimerisation domain LL3_02657 IPR036281 SinR repressor/SinI anti-repressor, dimerisation domain superfamily LL3_02658 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LL3_02658 IPR010981 SinR repressor/SinI anti-repressor, dimerisation domain LL3_02658 IPR036281 SinR repressor/SinI anti-repressor, dimerisation domain superfamily LL3_02658 IPR001387 Cro/C1-type helix-turn-helix domain LL3_02659 IPR023833 Signal peptide, camelysin LL3_02659 IPR022121 Peptidase M73, camelysin LL3_02660 IPR036286 LexA/Signal peptidase-like superfamily LL3_02660 IPR001733 Peptidase S26B LL3_02661 IPR023833 Signal peptide, camelysin LL3_02661 IPR023848 TasA anchoring/assembly protein LL3_02662 IPR024987 Protein of unknown function DUF3889 LL3_02663 IPR025622 YqzE-like protein LL3_02664 IPR020372 Competence operon G protein 7, ComGG LL3_02665 IPR016977 Competence operon G, ComGF LL3_02667 IPR016785 ComG operon protein 4 LL3_02667 IPR012902 Prokaryotic N-terminal methylation site LL3_02667 IPR002416 Type II secretion system protein H LL3_02668 IPR012902 Prokaryotic N-terminal methylation site LL3_02668 IPR016940 ComG operon protein C LL3_02669 IPR018076 Type II secretion system F domain LL3_02669 IPR001992 Type II secretion system conserved site LL3_02669 IPR003004 GspF/PilC family LL3_02669 IPR042094 Type II secretion system F domain superfamily LL3_02670 IPR003593 AAA+ ATPase domain LL3_02670 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02670 IPR001482 Type II/IV secretion system protein LL3_02672 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB LL3_02673 IPR036318 FAD-binding, type PCMH-like superfamily LL3_02673 IPR005170 Transporter-associated domain LL3_02673 IPR002550 CNNM, transmembrane domain LL3_02673 IPR016169 FAD-binding, type PCMH, subdomain 2 LL3_02673 IPR000644 CBS domain LL3_02674 IPR025751 RsbT co-antagonist protein RsbRD, N-terminal domain LL3_02674 IPR002645 STAS domain LL3_02674 IPR036513 STAS domain superfamily LL3_02675 IPR006660 Arsenate reductase-like LL3_02675 IPR006504 Transcriptional regulator Spx/MgsR LL3_02675 IPR036249 Thioredoxin-like superfamily LL3_02676 IPR020254 Protein of unknown function DUF2626 LL3_02677 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like LL3_02677 IPR001279 Metallo-beta-lactamase LL3_02678 IPR024490 Protein of unknown function DUF2759 LL3_02679 IPR029756 MTH1187/YkoF-like LL3_02679 IPR002767 Thiamine-binding protein LL3_02681 IPR000834 Peptidase M14, carboxypeptidase A LL3_02681 IPR034274 ENP1, carboxypeptidase domain LL3_02682 IPR004654 Glucokinase ROK LL3_02682 IPR000600 ROK family LL3_02683 IPR009256 Protein of unknown function DUF910 LL3_02683 IPR023164 YqgQ-like superfamily LL3_02684 IPR004770 Na+/H+ antiporter NhaC LL3_02684 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal LL3_02686 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily LL3_02686 IPR002698 5-formyltetrahydrofolate cyclo-ligase LL3_02686 IPR037171 NagB/RpiA transferase-like LL3_02691 IPR003593 AAA+ ATPase domain LL3_02691 IPR003439 ABC transporter-like LL3_02691 IPR017871 ABC transporter, conserved site LL3_02691 IPR005670 Phosphate transport system permease protein 1 LL3_02691 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02691 IPR015850 ABC transporter, phosphate import, PstB LL3_02692 IPR005670 Phosphate transport system permease protein 1 LL3_02692 IPR015850 ABC transporter, phosphate import, PstB LL3_02692 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02692 IPR017871 ABC transporter, conserved site LL3_02692 IPR003593 AAA+ ATPase domain LL3_02692 IPR003439 ABC transporter-like LL3_02693 IPR005672 Phosphate transport system permease protein PstA LL3_02693 IPR035906 MetI-like superfamily LL3_02693 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LL3_02694 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LL3_02694 IPR035906 MetI-like superfamily LL3_02694 IPR011864 Phosphate ABC transporter, permease protein PstC LL3_02695 IPR011862 Phosphate binding protein LL3_02695 IPR024370 PBP domain LL3_02697 IPR011701 Major facilitator superfamily LL3_02697 IPR036259 MFS transporter superfamily LL3_02698 IPR019831 Manganese/iron superoxide dismutase, N-terminal LL3_02698 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily LL3_02698 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily LL3_02698 IPR001189 Manganese/iron superoxide dismutase LL3_02698 IPR019833 Manganese/iron superoxide dismutase, binding site LL3_02698 IPR019832 Manganese/iron superoxide dismutase, C-terminal LL3_02699 IPR007403 Protein of unknown function DUF456 LL3_02700 IPR009574 Protein of unknown function DUF1189 LL3_02701 IPR018392 LysM domain LL3_02702 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial LL3_02702 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type LL3_02702 IPR011005 Dihydropteroate synthase-like LL3_02704 IPR036412 HAD-like superfamily LL3_02704 IPR023214 HAD superfamily LL3_02704 IPR009206 Nucleotidase, putative LL3_02705 IPR002481 Ferric-uptake regulator LL3_02705 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_02705 IPR036390 Winged helix DNA-binding domain superfamily LL3_02706 IPR003740 Uncharacterised membrane protein YitT LL3_02706 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal LL3_02706 IPR019264 Domain of unknown function DUF2179 LL3_02707 IPR020277 Protein of unknown function DUF2624 LL3_02708 IPR018246 AP endonuclease 2, zinc binding site LL3_02708 IPR001719 AP endonuclease 2 LL3_02708 IPR036237 Xylose isomerase-like superfamily LL3_02708 IPR013022 Xylose isomerase-like, TIM barrel domain LL3_02709 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02709 IPR001650 Helicase, C-terminal LL3_02709 IPR014001 Helicase superfamily 1/2, ATP-binding domain LL3_02709 IPR011545 DEAD/DEAH box helicase domain LL3_02709 IPR030881 DEAD-box ATP-dependent RNA helicase CshB LL3_02709 IPR014014 RNA helicase, DEAD-box type, Q motif LL3_02710 IPR025571 YqfQ-like protein LL3_02711 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase LL3_02712 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal LL3_02712 IPR017221 GTP cyclohydrolase 1 type 2//Nif3, bacteria LL3_02712 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily LL3_02712 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 LL3_02713 IPR006901 tRNA methyltransferase TrmK LL3_02713 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_02714 IPR009056 Cytochrome c-like domain LL3_02714 IPR036909 Cytochrome c-like domain superfamily LL3_02714 IPR012218 Cytochrome c, Bacillus subtilis c550-related LL3_02715 IPR028630 RNA polymerase sigma factor RpoD LL3_02715 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_02715 IPR013324 RNA polymerase sigma factor, region 3/4-like LL3_02715 IPR012760 RNA polymerase sigma factor RpoD, C-terminal LL3_02715 IPR007627 RNA polymerase sigma-70 region 2 LL3_02715 IPR009042 RNA polymerase sigma-70 region 1.2 LL3_02715 IPR014284 RNA polymerase sigma-70 like domain LL3_02715 IPR007624 RNA polymerase sigma-70 region 3 LL3_02715 IPR007630 RNA polymerase sigma-70 region 4 LL3_02715 IPR013325 RNA polymerase sigma factor, region 2 LL3_02715 IPR042189 Sigma-70 factor, region 1.1 superfamily LL3_02715 IPR000943 RNA polymerase sigma-70 LL3_02715 IPR007127 RNA polymerase sigma factor 70, region 1.1 LL3_02716 IPR013264 DNA primase, catalytic core, N-terminal LL3_02716 IPR019475 DNA primase, DnaB-helicase binding domain LL3_02716 IPR006295 DNA primase, DnaG LL3_02716 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily LL3_02716 IPR002694 Zinc finger, CHC2-type LL3_02716 IPR006171 TOPRIM domain LL3_02716 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal LL3_02716 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily LL3_02716 IPR034151 Bacterial DnaG primase, TOPRIM domain LL3_02716 IPR030846 DNA primase DnaG, bacteria LL3_02716 IPR036977 DNA Primase, CHC2-type zinc finger LL3_02717 IPR003791 Protein of unknown function UPF0178 LL3_02718 IPR026565 Putative pyruvate, phosphate dikinase regulatory protein LL3_02718 IPR005177 Bifunctional kinase-pyrophosphorylase LL3_02719 IPR036390 Winged helix DNA-binding domain superfamily LL3_02719 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_02719 IPR016842 Protein of unknown function UCP026546, HtH-CBS LL3_02719 IPR013196 Helix-turn-helix, type 11 LL3_02719 IPR000644 CBS domain LL3_02720 IPR006194 Glycine-tRNA synthetase, heterodimeric LL3_02720 IPR015944 Glycine-tRNA ligase, beta subunit LL3_02721 IPR002310 Glycine-tRNA ligase, alpha subunit LL3_02721 IPR006194 Glycine-tRNA synthetase, heterodimeric LL3_02722 IPR042242 Recombination protein O, zinc-binding domain LL3_02722 IPR003717 Recombination protein O, RecO LL3_02722 IPR012340 Nucleic acid-binding, OB-fold LL3_02722 IPR022572 DNA replication/recombination mediator RecO, N-terminal LL3_02722 IPR037278 ARFGAP/RecO-like zinc finger LL3_02723 IPR025617 YqzL-like protein LL3_02724 IPR005662 GTP-binding protein Era LL3_02724 IPR005225 Small GTP-binding protein domain LL3_02724 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02724 IPR030388 Era-type guanine nucleotide-binding (G) domain LL3_02724 IPR009019 K homology domain superfamily, prokaryotic type LL3_02724 IPR015946 K homology domain-like, alpha/beta LL3_02724 IPR004044 K Homology domain, type 2 LL3_02724 IPR006073 GTP binding domain LL3_02725 IPR016192 APOBEC/CMP deaminase, zinc-binding LL3_02725 IPR006262 Cytidine deaminase, homotetrameric LL3_02725 IPR002125 Cytidine and deoxycytidylate deaminase domain LL3_02725 IPR016193 Cytidine deaminase-like LL3_02726 IPR000829 DAGK family LL3_02726 IPR036945 Diacylglycerol kinase (DAGK) superfamily LL3_02726 IPR033717 Undecaprenol kinase LL3_02727 IPR023091 Metalloprotease catalytic domain superfamily, predicted LL3_02727 IPR002036 Endoribonuclease YbeY LL3_02727 IPR020549 Endoribonuclease YbeY, conserved site LL3_02728 IPR011624 Metal-dependent phosphohydrolase, 7TM extracellular domain LL3_02728 IPR003607 HD/PDEase domain LL3_02728 IPR006674 HD domain LL3_02728 IPR006675 HDIG domain LL3_02728 IPR011621 Metal-dependent phosphohydrolase, 7TM intracellular domain LL3_02729 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02729 IPR003714 PhoH-like protein LL3_02730 IPR010690 Putative stage IV sporulation YqfD LL3_02731 IPR022476 Sporulation protein YabP/YqfC LL3_02731 IPR022477 Sporulation protein YqfC LL3_02732 IPR016788 Uncharacterised conserved protein UCP021361 LL3_02733 IPR022853 Uncharacterised protein family YdfA-immunity LL3_02734 IPR029045 ClpP/crotonase-like domain superfamily LL3_02734 IPR002825 Peptidase S49, serine-peptidase prokaryotes LL3_02734 IPR002810 NfeD-like, C-terminal domain LL3_02735 IPR042184 YqeY/Aim41, N-terminal domain LL3_02735 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like LL3_02735 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 2 LL3_02735 IPR019004 Uncharacterised protein YqeY/Aim41 LL3_02736 IPR038380 Ribosomal protein S21 superfamily LL3_02736 IPR018278 Ribosomal protein S21, conserved site LL3_02736 IPR001911 Ribosomal protein S21 LL3_02737 IPR004633 Na/Pi-cotransporter II-related/YqeW-like protein LL3_02737 IPR003841 Sodium-dependent phosphate transport protein LL3_02738 IPR002792 TRAM domain LL3_02738 IPR006467 MiaB-like tRNA modifying enzyme LL3_02738 IPR038135 Methylthiotransferase, N-terminal domain superfamily LL3_02738 IPR034557 Threonylcarbamoyladenosine tRNA methylthiotransferase LL3_02738 IPR006638 Elp3/MiaB/NifB LL3_02738 IPR005839 Methylthiotransferase LL3_02738 IPR023404 Radical SAM, alpha/beta horseshoe LL3_02738 IPR007197 Radical SAM LL3_02738 IPR020612 Methylthiotransferase, conserved site LL3_02738 IPR013848 Methylthiotransferase, N-terminal LL3_02739 IPR029028 Alpha/beta knot methyltransferases LL3_02739 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal LL3_02739 IPR015947 PUA-like superfamily LL3_02739 IPR006700 Ribosomal RNA small subunit methyltransferase E LL3_02740 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_02740 IPR004498 Ribosomal protein L11 methyltransferase LL3_02741 IPR012724 Chaperone DnaJ LL3_02741 IPR002939 Chaperone DnaJ, C-terminal LL3_02741 IPR001623 DnaJ domain LL3_02741 IPR018253 DnaJ domain, conserved site LL3_02741 IPR001305 Heat shock protein DnaJ, cysteine-rich domain LL3_02741 IPR036869 Chaperone J-domain superfamily LL3_02741 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily LL3_02741 IPR008971 HSP40/DnaJ peptide-binding LL3_02742 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily LL3_02742 IPR012725 Chaperone DnaK LL3_02742 IPR018181 Heat shock protein 70, conserved site LL3_02742 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily LL3_02742 IPR013126 Heat shock protein 70 family LL3_02743 IPR013805 GrpE nucleotide exchange factor, coiled-coil LL3_02743 IPR000740 GrpE nucleotide exchange factor LL3_02743 IPR009012 GrpE nucleotide exchange factor, head LL3_02744 IPR023120 Winged helix-turn-helix transcription repressor, HrcA, inserted dimerising domain superfamily LL3_02744 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_02744 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal LL3_02744 IPR002571 Heat-inducible transcription repressor HrcA LL3_02744 IPR036390 Winged helix DNA-binding domain superfamily LL3_02744 IPR029016 GAF-like domain superfamily LL3_02745 IPR023404 Radical SAM, alpha/beta horseshoe LL3_02745 IPR007197 Radical SAM LL3_02745 IPR004559 Heme chaperone HemW-like LL3_02745 IPR010723 HemN, C-terminal LL3_02745 IPR006638 Elp3/MiaB/NifB LL3_02745 IPR034505 Anaerobic coproporphyrinogen-III oxidase LL3_02746 IPR005225 Small GTP-binding protein domain LL3_02746 IPR031157 Tr-type G domain, conserved site LL3_02746 IPR004161 Translation elongation factor EFTu-like, domain 2 LL3_02746 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02746 IPR000640 Elongation factor EFG, domain V-like LL3_02746 IPR035647 EF-G domain III/V-like LL3_02746 IPR006297 Elongation factor 4 LL3_02746 IPR000795 Transcription factor, GTP-binding domain LL3_02746 IPR038363 LepA, C-terminal domain superfamily LL3_02746 IPR013842 GTP-binding protein LepA, C-terminal LL3_02746 IPR035654 Elongation factor 4, domain IV LL3_02746 IPR009000 Translation protein, beta-barrel domain superfamily LL3_02747 IPR020534 Uncharacterised protein family YqxA LL3_02748 IPR010897 Sporulation stage II, protein P LL3_02749 IPR005080 Peptidase A25, germination protease LL3_02749 IPR023430 Peptidase HybD-like domain superfamily LL3_02750 IPR002583 Ribosomal protein S20 LL3_02750 IPR036510 Ribosomal protein S20 superfamily LL3_02751 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal LL3_02751 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02751 IPR010372 DNA polymerase III delta, N-terminal LL3_02751 IPR005790 DNA polymerase III, delta subunit LL3_02752 IPR025416 YqzM-like protein LL3_02754 IPR016192 APOBEC/CMP deaminase, zinc-binding LL3_02754 IPR002125 Cytidine and deoxycytidylate deaminase domain LL3_02754 IPR013404 Competence operon E, ComEB LL3_02754 IPR035105 Deoxycytidylate deaminase domain LL3_02754 IPR015517 Deoxycytidylate deaminase-related LL3_02754 IPR016193 Cytidine deaminase-like LL3_02755 IPR004787 Competence protein ComEA LL3_02755 IPR004509 Competence protein ComEA, helix-hairpin-helix domain LL3_02755 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 LL3_02755 IPR010994 RuvA domain 2-like LL3_02755 IPR019554 Soluble ligand binding domain LL3_02756 IPR036291 NAD(P)-binding domain superfamily LL3_02756 IPR000304 Pyrroline-5-carboxylate reductase LL3_02756 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain LL3_02756 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal LL3_02756 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily LL3_02757 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_02757 IPR041698 Methyltransferase domain 25 LL3_02758 IPR004394 Protein Iojap/ribosomal silencing factor RsfS LL3_02759 IPR005249 Conserved hypothetical protein CHP00488 LL3_02759 IPR003607 HD/PDEase domain LL3_02759 IPR006674 HD domain LL3_02760 IPR004821 Cytidyltransferase-like domain LL3_02760 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase LL3_02760 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LL3_02761 IPR017924 RNA-binding protein YhbY LL3_02761 IPR035920 YhbY-like superfamily LL3_02761 IPR001890 RNA-binding, CRM domain LL3_02762 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase LL3_02762 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal LL3_02762 IPR011342 Shikimate dehydrogenase LL3_02762 IPR041121 SDH, C-terminal LL3_02762 IPR022893 Shikimate dehydrogenase family LL3_02762 IPR036291 NAD(P)-binding domain superfamily LL3_02763 IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain LL3_02763 IPR019988 GTP-binding protein, riobosome biogenesis, YqeH LL3_02763 IPR006073 GTP binding domain LL3_02763 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02764 IPR010021 HAD-superfamily phosphatase, YqeG-like LL3_02764 IPR006549 HAD-superfamily hydrolase,subfamily IIIA LL3_02764 IPR023214 HAD superfamily LL3_02764 IPR006439 HAD hydrolase, subfamily IA LL3_02764 IPR036412 HAD-like superfamily LL3_02765 IPR015064 Sporulation inhibitor A LL3_02765 IPR036916 Sporulation inhibitor A superfamily LL3_02767 IPR001087 GDSL lipase/esterase LL3_02767 IPR036514 SGNH hydrolase superfamily LL3_02768 IPR026402 Chitooligosaccharide deacetylase NodB LL3_02768 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel LL3_02768 IPR002509 NodB homology domain LL3_02769 IPR002477 Peptidoglycan binding-like LL3_02769 IPR036365 PGBD-like superfamily LL3_02769 IPR036366 PGBD superfamily LL3_02769 IPR002502 N-acetylmuramoyl-L-alanine amidase domain LL3_02769 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily LL3_02770 IPR015414 Transmembrane protein TMEM64 LL3_02770 IPR032816 SNARE associated Golgi protein LL3_02774 IPR007627 RNA polymerase sigma-70 region 2 LL3_02774 IPR000943 RNA polymerase sigma-70 LL3_02774 IPR014284 RNA polymerase sigma-70 like domain LL3_02774 IPR013325 RNA polymerase sigma factor, region 2 LL3_02774 IPR007630 RNA polymerase sigma-70 region 4 LL3_02774 IPR013324 RNA polymerase sigma factor, region 3/4-like LL3_02777 IPR007630 RNA polymerase sigma-70 region 4 LL3_02777 IPR013324 RNA polymerase sigma factor, region 3/4-like LL3_02777 IPR014284 RNA polymerase sigma-70 like domain LL3_02777 IPR013325 RNA polymerase sigma factor, region 2 LL3_02777 IPR007627 RNA polymerase sigma-70 region 2 LL3_02777 IPR000943 RNA polymerase sigma-70 LL3_02779 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02782 IPR011701 Major facilitator superfamily LL3_02782 IPR020846 Major facilitator superfamily domain LL3_02782 IPR036259 MFS transporter superfamily LL3_02784 IPR007837 DNA damage-inducible protein DinB LL3_02784 IPR034660 DinB/YfiT-like putative metalloenzymes LL3_02786 IPR000150 Cof family LL3_02786 IPR036412 HAD-like superfamily LL3_02786 IPR006379 HAD-superfamily hydrolase, subfamily IIB LL3_02786 IPR023214 HAD superfamily LL3_02787 IPR023214 HAD superfamily LL3_02787 IPR036412 HAD-like superfamily LL3_02787 IPR006379 HAD-superfamily hydrolase, subfamily IIB LL3_02787 IPR000150 Cof family LL3_02789 IPR035472 RpiR-like, SIS domain LL3_02789 IPR009057 Homeobox-like domain superfamily LL3_02789 IPR000281 Helix-turn-helix protein RpiR LL3_02789 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_02789 IPR001347 Sugar isomerase (SIS) LL3_02790 IPR014628 Mannose-6-phosphate isomerase, Firmicutes type, short form LL3_02790 IPR014710 RmlC-like jelly roll fold LL3_02790 IPR011051 RmlC-like cupin domain superfamily LL3_02790 IPR001250 Mannose-6-phosphate isomerase, type I LL3_02791 IPR003352 Phosphotransferase system, EIIC LL3_02791 IPR003501 Phosphotransferase system, EIIB component, type 2/3 LL3_02791 IPR013011 Phosphotransferase system, EIIB component, type 2 LL3_02791 IPR036095 PTS system IIB component-like superfamily LL3_02791 IPR002178 PTS EIIA type-2 domain LL3_02791 IPR016152 Phosphotransferase/anion transporter LL3_02791 IPR003353 Phosphotransferase system, fructose-specific IIB subunit LL3_02791 IPR013014 Phosphotransferase system, EIIC component, type 2 LL3_02791 IPR004715 Phosphotransferase system, IIA component fructose subfamily LL3_02791 IPR006327 Phosphotransferase system, fructose IIC component LL3_02792 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_02792 IPR002178 PTS EIIA type-2 domain LL3_02792 IPR036634 PRD domain superfamily LL3_02792 IPR016152 Phosphotransferase/anion transporter LL3_02792 IPR011608 PRD domain LL3_02792 IPR036095 PTS system IIB component-like superfamily LL3_02792 IPR013011 Phosphotransferase system, EIIB component, type 2 LL3_02792 IPR013196 Helix-turn-helix, type 11 LL3_02792 IPR007737 Mga helix-turn-helix domain LL3_02794 IPR001279 Metallo-beta-lactamase LL3_02794 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D LL3_02794 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like LL3_02795 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain LL3_02795 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily LL3_02795 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC LL3_02798 IPR005119 LysR, substrate-binding LL3_02798 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_02798 IPR036390 Winged helix DNA-binding domain superfamily LL3_02798 IPR000847 Transcription regulator HTH, LysR LL3_02799 IPR011701 Major facilitator superfamily LL3_02799 IPR036259 MFS transporter superfamily LL3_02799 IPR020846 Major facilitator superfamily domain LL3_02800 IPR008254 Flavodoxin/nitric oxide synthase LL3_02800 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase LL3_02800 IPR029039 Flavoprotein-like superfamily LL3_02800 IPR036396 Cytochrome P450 superfamily LL3_02800 IPR017972 Cytochrome P450, conserved site LL3_02800 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding LL3_02800 IPR001128 Cytochrome P450 LL3_02800 IPR023206 Bifunctional cytochrome P450/NADPH--cytochrome P450 reductase LL3_02800 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain LL3_02800 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily LL3_02800 IPR001433 Oxidoreductase FAD/NAD(P)-binding LL3_02800 IPR001094 Flavodoxin-like LL3_02800 IPR017927 FAD-binding domain, ferredoxin reductase-type LL3_02800 IPR017938 Riboflavin synthase-like beta-barrel LL3_02801 IPR032551 HTH-type transcriptional repressor, C-terminal LL3_02801 IPR009057 Homeobox-like domain superfamily LL3_02801 IPR001647 DNA-binding HTH domain, TetR-type LL3_02801 IPR023772 DNA-binding HTH domain, TetR-type, conserved site LL3_02803 IPR013216 Methyltransferase type 11 LL3_02803 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_02805 IPR012655 Uncharacterised protein YrzI LL3_02806 IPR023271 Aquaporin-like LL3_02806 IPR000292 Formate/nitrite transporter LL3_02806 IPR024002 Formate/nitrite transporter, conserved site LL3_02807 IPR018745 Domain of unknown function DUF2294 LL3_02808 IPR041924 Formate dehydrogenase H, N-terminal LL3_02808 IPR006657 Molybdopterin dinucleotide-binding domain LL3_02808 IPR009010 Aspartate decarboxylase-like domain superfamily LL3_02808 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site LL3_02808 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain LL3_02808 IPR006656 Molybdopterin oxidoreductase LL3_02808 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding LL3_02808 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain LL3_02808 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain LL3_02808 IPR036010 2Fe-2S ferredoxin-like superfamily LL3_02808 IPR006478 Formate dehydrogenase, alpha subunit LL3_02809 IPR012440 Protein of unknown function DUF1641 LL3_02810 IPR025418 YrhC-like protein LL3_02811 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_02811 IPR015424 Pyridoxal phosphate-dependent transferase LL3_02811 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_02811 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme LL3_02812 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site LL3_02812 IPR001926 Pyridoxal-phosphate dependent enzyme LL3_02812 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme LL3_02813 IPR035994 Nucleoside phosphorylase superfamily LL3_02813 IPR000845 Nucleoside phosphorylase domain LL3_02813 IPR010049 MTA/SAH nucleosidase LL3_02814 IPR041698 Methyltransferase domain 25 LL3_02814 IPR023553 Uncharacterised methyltransferase, YrrT LL3_02814 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_02815 IPR019686 Protein of unknown function DUF2536 LL3_02816 IPR009988 Domain of unknown function DUF1510 LL3_02817 IPR012338 Beta-lactamase/transpeptidase-like LL3_02817 IPR005311 Penicillin-binding protein, dimerisation domain LL3_02817 IPR001460 Penicillin-binding protein, transpeptidase LL3_02817 IPR036138 Penicillin-binding protein, dimerisation domain superfamily LL3_02818 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal LL3_02818 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily LL3_02818 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily LL3_02818 IPR018151 Transcription elongation factor, GreA/GreB, conserved site LL3_02818 IPR006359 Transcription elongation factor GreA LL3_02818 IPR028624 Transcription elongation factor GreA/GreB LL3_02818 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal LL3_02818 IPR023459 Transcription elongation factor GreA/GreB family LL3_02819 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02819 IPR000764 Uridine kinase-like LL3_02819 IPR026008 Uridine kinase LL3_02819 IPR006083 Phosphoribulokinase/uridine kinase LL3_02823 IPR003770 Endolytic murein transglycosylase LL3_02824 IPR009711 Uncharacterised protein family UPF0473 LL3_02825 IPR012337 Ribonuclease H-like superfamily LL3_02825 IPR005227 Putative pre-16S rRNA nuclease LL3_02825 IPR006641 YqgF/RNase H-like domain LL3_02825 IPR037027 YqgF/RNase H-like domain superfamily LL3_02826 IPR009309 IreB regulatory phosphoprotein LL3_02827 IPR003156 DHHA1 domain LL3_02827 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria LL3_02827 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal LL3_02827 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily LL3_02827 IPR009000 Translation protein, beta-barrel domain superfamily LL3_02827 IPR002318 Alanine-tRNA ligase, class IIc LL3_02827 IPR018165 Alanyl-tRNA synthetase, class IIc, core domain LL3_02827 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily LL3_02827 IPR012947 Threonyl/alanyl tRNA synthetase, SAD LL3_02828 IPR002549 Transmembrane protein TqsA-like LL3_02829 IPR003593 AAA+ ATPase domain LL3_02829 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type LL3_02829 IPR003439 ABC transporter-like LL3_02829 IPR017871 ABC transporter, conserved site LL3_02829 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02830 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF LL3_02830 IPR018313 Solute-binding protein family 3, conserved site LL3_02830 IPR001320 Ionotropic glutamate receptor LL3_02831 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LL3_02831 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain LL3_02831 IPR035906 MetI-like superfamily LL3_02832 IPR035906 MetI-like superfamily LL3_02832 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LL3_02832 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain LL3_02833 IPR025029 Protein of unknown function DUF3918 LL3_02835 IPR011033 PRC-barrel-like superfamily LL3_02835 IPR027275 PRC-barrel domain LL3_02836 IPR041451 RecD-like DNA helicase, SH3 domain LL3_02836 IPR029493 RecD helicase-like helix-hairpin-helix domain LL3_02836 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02836 IPR006345 RecD-like DNA helicase LL3_02836 IPR003593 AAA+ ATPase domain LL3_02836 IPR027785 UvrD-like helicase C-terminal domain LL3_02837 IPR011990 Tetratricopeptide-like helical domain superfamily LL3_02837 IPR019734 Tetratricopeptide repeat LL3_02837 IPR013105 Tetratricopeptide repeat 2 LL3_02837 IPR013026 Tetratricopeptide repeat-containing domain LL3_02838 IPR004506 tRNA-specific 2-thiouridylase LL3_02838 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LL3_02838 IPR023382 Adenine nucleotide alpha hydrolase-like domains LL3_02839 IPR000192 Aminotransferase class V domain LL3_02839 IPR016454 Cysteine desulfurase LL3_02839 IPR015424 Pyridoxal phosphate-dependent transferase LL3_02839 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_02839 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_02839 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site LL3_02840 IPR036390 Winged helix DNA-binding domain superfamily LL3_02840 IPR030489 Transcription regulator Rrf2-type, conserved site LL3_02840 IPR000944 Transcription regulator Rrf2-type LL3_02840 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_02841 IPR003593 AAA+ ATPase domain LL3_02841 IPR021886 MgsA AAA+ ATPase C-terminal LL3_02841 IPR008824 RuvB-like P-loop domain LL3_02841 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02841 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal LL3_02841 IPR032423 AAA C-terminal domain LL3_02843 IPR000594 THIF-type NAD/FAD binding fold LL3_02843 IPR035985 Ubiquitin-activating enzyme LL3_02844 IPR004524 Aspartate-tRNA ligase, type 1 LL3_02844 IPR006195 Aminoacyl-tRNA synthetase, class II LL3_02844 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb LL3_02844 IPR004115 GAD-like domain superfamily LL3_02844 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type LL3_02844 IPR029351 GAD domain LL3_02844 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) LL3_02844 IPR012340 Nucleic acid-binding, OB-fold LL3_02845 IPR004154 Anticodon-binding LL3_02845 IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain LL3_02845 IPR006195 Aminoacyl-tRNA synthetase, class II LL3_02845 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit LL3_02845 IPR036621 Anticodon-binding domain superfamily LL3_02845 IPR033656 Histidyl-anticodon-binding LL3_02845 IPR015807 Histidine-tRNA ligase LL3_02847 IPR035378 Uncharacterized protein YrzK-like LL3_02848 IPR017293 N-acetylmuramoyl-L-alanine amidase, YrvJ, predicted LL3_02848 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain LL3_02848 IPR003646 SH3-like domain, bacterial-type LL3_02849 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily LL3_02849 IPR003732 D-aminoacyl-tRNA deacylase DTD LL3_02850 IPR012676 TGS-like LL3_02850 IPR004095 TGS LL3_02850 IPR033655 RelA, TGS domain LL3_02850 IPR003607 HD/PDEase domain LL3_02850 IPR004811 RelA/SpoT family LL3_02850 IPR012675 Beta-grasp domain superfamily LL3_02850 IPR002912 ACT domain LL3_02850 IPR007685 RelA/SpoT LL3_02851 IPR000836 Phosphoribosyltransferase domain LL3_02851 IPR005764 Adenine phosphoribosyl transferase LL3_02851 IPR029057 Phosphoribosyltransferase-like LL3_02852 IPR038763 DHH phosphoesterase superfamily LL3_02852 IPR001667 DDH domain LL3_02852 IPR003156 DHHA1 domain LL3_02852 IPR004610 Bacterial RecJ exonuclease LL3_02852 IPR018779 Single-stranded-DNA-specific exonuclease RecJ, C-terminal LL3_02852 IPR041122 RecJ, OB domain LL3_02853 IPR010445 Lipopolysaccharide assembly protein A domain LL3_02854 IPR026278 Potassium/proton antiporter subunit KhtT LL3_02854 IPR006037 Regulator of K+ conductance, C-terminal LL3_02854 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily LL3_02855 IPR022645 Protein-export membrane protein SecD/SecF, bacterial LL3_02855 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site LL3_02855 IPR005665 Protein-export membrane protein SecF, bacterial LL3_02855 IPR005791 Protein translocase subunit SecD LL3_02855 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial LL3_02856 IPR025716 Post-transcriptional regulator LL3_02857 IPR002797 Polysaccharide biosynthesis protein LL3_02857 IPR014249 Sporulation stage V protein B LL3_02857 IPR024923 Peptidoglycan biosynthesis protein, SpoVB-type LL3_02857 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain LL3_02858 IPR007353 Protein of unknown function DUF421 LL3_02858 IPR023090 UPF0702, alpha/beta domain superfamily LL3_02859 IPR023804 Protein of unknown function DUF3792, transmembrane LL3_02860 IPR003849 Preprotein translocase YajC LL3_02861 IPR004803 tRNA-guanine transglycosylase LL3_02861 IPR036511 Queuine tRNA-ribosyltransferase-like LL3_02861 IPR002616 tRNA-guanine(15) transglycosylase-like LL3_02862 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily LL3_02862 IPR042119 QueA, domain 2 LL3_02862 IPR042118 QueA, domain 1 LL3_02862 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA LL3_02863 IPR021320 Protein of unknown function DUF2905 LL3_02864 IPR041445 RuvB, AAA lid domain LL3_02864 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02864 IPR008824 RuvB-like P-loop domain LL3_02864 IPR003593 AAA+ ATPase domain LL3_02864 IPR008823 RuvB C-terminal winged helix domain LL3_02864 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_02864 IPR004605 DNA helicase, Holliday junction RuvB-type LL3_02864 IPR036390 Winged helix DNA-binding domain superfamily LL3_02865 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial LL3_02865 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 LL3_02865 IPR012340 Nucleic acid-binding, OB-fold LL3_02865 IPR000085 Bacterial DNA recombination protein RuvA LL3_02865 IPR010994 RuvA domain 2-like LL3_02865 IPR011114 Holliday junction DNA helicase RuvA, C-terminal LL3_02865 IPR036267 RuvA, C-terminal domain superfamily LL3_02866 IPR015071 Bypass-of-forespore C, N-terminal LL3_02866 IPR038117 Bypass of forespore C, C-terminal domain superfamily LL3_02866 IPR015050 Bypass of forespore C, C-terminal LL3_02866 IPR038118 Bypass-of-forespore C, N-terminal domain superfamily LL3_02868 IPR019076 Sporulation lipoprotein YhcN/YlaJ-like LL3_02869 IPR014248 Spore coat assembly protein SafA LL3_02869 IPR036779 LysM domain superfamily LL3_02869 IPR018392 LysM domain LL3_02870 IPR003473 Quinolinate synthetase A LL3_02870 IPR023515 Quinolinate synthase A, type 3 LL3_02870 IPR036094 Quinolinate synthetase A superfamily LL3_02871 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily LL3_02871 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal LL3_02871 IPR013785 Aldolase-type TIM barrel LL3_02871 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal LL3_02871 IPR004393 Nicotinate-nucleotide pyrophosphorylase LL3_02871 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal LL3_02871 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD LL3_02872 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily LL3_02872 IPR036188 FAD/NAD(P)-binding domain superfamily LL3_02872 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal LL3_02872 IPR005288 L-aspartate oxidase LL3_02872 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily LL3_02872 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain LL3_02873 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site LL3_02873 IPR015424 Pyridoxal phosphate-dependent transferase LL3_02873 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_02873 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_02873 IPR016454 Cysteine desulfurase LL3_02873 IPR000192 Aminotransferase class V domain LL3_02874 IPR013196 Helix-turn-helix, type 11 LL3_02874 IPR004173 3H domain LL3_02874 IPR035922 3H domain superfamily LL3_02874 IPR036390 Winged helix DNA-binding domain superfamily LL3_02874 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_02874 IPR026043 Transcription repressor NadR LL3_02875 IPR018528 Prephenate dehydratase, conserved site LL3_02875 IPR001086 Prephenate dehydratase LL3_02875 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase LL3_02875 IPR002912 ACT domain LL3_02876 IPR008310 UPF0735 ACT domain-containing protein LL3_02876 IPR002912 ACT domain LL3_02877 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02877 IPR015349 GTP-binding protein OBG, C-terminal LL3_02877 IPR036726 GTP1/OBG domain superfamily LL3_02877 IPR006169 GTP1/OBG domain LL3_02877 IPR006074 GTP1/OBG, conserved site LL3_02877 IPR036346 GTP-binding protein OBG, C-terminal domain superfamily LL3_02877 IPR031167 OBG-type guanine nucleotide-binding (G) domain LL3_02877 IPR014100 GTP-binding protein Obg/CgtA LL3_02877 IPR006073 GTP binding domain LL3_02877 IPR035101 GTP-binding protein, Obg-type LL3_02877 IPR005225 Small GTP-binding protein domain LL3_02878 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB LL3_02878 IPR037100 Sporulation initiation phosphotransferase B, C-terminal domain superfamily LL3_02878 IPR039506 SpoOB, alpha-helical domain LL3_02878 IPR016122 Sporulation initiation phosphotransferase B, C-terminal LL3_02879 IPR001684 Ribosomal protein L27 LL3_02879 IPR018261 Ribosomal protein L27, conserved site LL3_02880 IPR036764 Cysteine protease Prp superfamily LL3_02880 IPR007422 Cysteine protease Prp LL3_02881 IPR018258 Ribosomal protein L21, conserved site LL3_02881 IPR036164 L21-like superfamily LL3_02881 IPR001787 Ribosomal protein L21 LL3_02881 IPR028909 Ribosomal protein L21-like LL3_02882 IPR008915 Peptidase M50 LL3_02883 IPR011055 Duplicated hybrid motif LL3_02883 IPR016047 Peptidase M23 LL3_02884 IPR010223 ATP binding protein MinD, bacterial-type LL3_02884 IPR025501 ATP binding protein MinD LL3_02884 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02884 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain LL3_02885 IPR013033 Septum formation inhibitor MinC LL3_02885 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily LL3_02885 IPR005526 Septum formation inhibitor MinC, C-terminal LL3_02885 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal LL3_02886 IPR007227 Cell shape-determining protein MreD LL3_02887 IPR042175 Cell/Rod shape-determining protein MreC, domain 2 LL3_02887 IPR042177 Cell/Rod shape-determining protein MreC, domain 1 LL3_02887 IPR007221 Rod shape-determining protein MreC LL3_02888 IPR004753 Cell shape determining protein MreB LL3_02889 IPR001405 Uncharacterised protein family UPF0758 LL3_02889 IPR025657 RadC-like JAB domain LL3_02889 IPR010994 RuvA domain 2-like LL3_02889 IPR020891 Uncharacterised protein family UPF0758, conserved site LL3_02889 IPR037518 MPN domain LL3_02890 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein LL3_02890 IPR029001 Inosine triphosphate pyrophosphatase-like LL3_02891 IPR007730 Sporulation-like domain LL3_02891 IPR036680 Sporulation-like domain superfamily LL3_02892 IPR000045 Prepilin type IV endopeptidase, peptidase domain LL3_02892 IPR010627 Peptidase A24A, N-terminal LL3_02893 IPR036615 Mur ligase, C-terminal domain superfamily LL3_02893 IPR036565 Mur-like, catalytic domain superfamily LL3_02893 IPR018109 Folylpolyglutamate synthetase, conserved site LL3_02893 IPR004101 Mur ligase, C-terminal LL3_02893 IPR001645 Folylpolyglutamate synthetase LL3_02893 IPR013221 Mur ligase, central LL3_02894 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily LL3_02894 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site LL3_02894 IPR002300 Aminoacyl-tRNA synthetase, class Ia LL3_02894 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding LL3_02894 IPR002303 Valine-tRNA ligase LL3_02894 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain LL3_02894 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LL3_02894 IPR033705 Valyl tRNA synthetase, anticodon-binding domain LL3_02894 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm LL3_02894 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm LL3_02894 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding LL3_02896 IPR011009 Protein kinase-like domain superfamily LL3_02896 IPR014253 Spore coat protein YsxE LL3_02897 IPR018392 LysM domain LL3_02897 IPR036779 LysM domain superfamily LL3_02898 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_02898 IPR015424 Pyridoxal phosphate-dependent transferase LL3_02898 IPR005814 Aminotransferase class-III LL3_02898 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase LL3_02898 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_02899 IPR013785 Aldolase-type TIM barrel LL3_02899 IPR030656 Delta-aminolevulinic acid dehydratase, active site LL3_02899 IPR001731 Delta-aminolevulinic acid dehydratase LL3_02900 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily LL3_02900 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase LL3_02900 IPR039793 Uroporphyrinogen-III synthase LL3_02901 IPR000860 Porphobilinogen deaminase LL3_02901 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site LL3_02901 IPR022417 Porphobilinogen deaminase, N-terminal LL3_02901 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily LL3_02901 IPR022418 Porphobilinogen deaminase, C-terminal LL3_02902 IPR002541 Cytochrome c assembly protein LL3_02903 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase LL3_02903 IPR036291 NAD(P)-binding domain superfamily LL3_02903 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily LL3_02903 IPR018214 Glutamyl-tRNA reductase, conserved site LL3_02903 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal LL3_02903 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain LL3_02903 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase LL3_02903 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily LL3_02905 IPR030393 EngB-type guanine nucleotide-binding (G) domain LL3_02905 IPR006073 GTP binding domain LL3_02905 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02905 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC LL3_02906 IPR008268 Peptidase S16, active site LL3_02906 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup LL3_02906 IPR027065 Lon protease LL3_02906 IPR004815 Lon protease, bacterial/eukaryotic-type LL3_02906 IPR027543 Lon protease, bacterial LL3_02906 IPR003111 Lon, substrate-binding domain LL3_02906 IPR003959 ATPase, AAA-type, core LL3_02906 IPR003593 AAA+ ATPase domain LL3_02906 IPR020568 Ribosomal protein S5 domain 2-type fold LL3_02906 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02906 IPR015947 PUA-like superfamily LL3_02906 IPR008269 Peptidase S16, Lon proteolytic domain LL3_02907 IPR008268 Peptidase S16, active site LL3_02907 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup LL3_02907 IPR003593 AAA+ ATPase domain LL3_02907 IPR003959 ATPase, AAA-type, core LL3_02907 IPR008269 Peptidase S16, Lon proteolytic domain LL3_02907 IPR027065 Lon protease LL3_02907 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02907 IPR014251 Sporulation protease LonB LL3_02907 IPR020568 Ribosomal protein S5 domain 2-type fold LL3_02908 IPR003959 ATPase, AAA-type, core LL3_02908 IPR004487 Clp protease, ATP-binding subunit ClpX LL3_02908 IPR038366 Zinc finger, ClpX C4-type superfamily LL3_02908 IPR019489 Clp ATPase, C-terminal LL3_02908 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02908 IPR003593 AAA+ ATPase domain LL3_02908 IPR010603 Zinc finger, ClpX C4-type LL3_02909 IPR036611 Trigger factor ribosome-binding domain superfamily LL3_02909 IPR027304 Trigger factor/SurA domain superfamily LL3_02909 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain LL3_02909 IPR037041 Trigger factor, C-terminal domain superfamily LL3_02909 IPR005215 Trigger factor LL3_02909 IPR008880 Trigger factor, C-terminal LL3_02909 IPR008881 Trigger factor, ribosome-binding, bacterial LL3_02910 IPR019734 Tetratricopeptide repeat LL3_02910 IPR011990 Tetratricopeptide-like helical domain superfamily LL3_02910 IPR013026 Tetratricopeptide repeat-containing domain LL3_02912 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain LL3_02912 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel LL3_02912 IPR004431 3-isopropylmalate dehydratase, small subunit LL3_02912 IPR033940 3-isopropylmalate dehydratase, swivel domain LL3_02913 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain LL3_02913 IPR033941 3-Isopropylmalate dehydratase, catalytic domain LL3_02913 IPR036008 Aconitase, iron-sulfur domain LL3_02913 IPR018136 Aconitase family, 4Fe-4S cluster binding site LL3_02913 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 LL3_02913 IPR004430 3-isopropylmalate dehydratase, large subunit LL3_02914 IPR004429 Isopropylmalate dehydrogenase LL3_02914 IPR024084 Isopropylmalate dehydrogenase-like domain LL3_02914 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site LL3_02915 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily LL3_02915 IPR013785 Aldolase-type TIM barrel LL3_02915 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain LL3_02915 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site LL3_02915 IPR000891 Pyruvate carboxyltransferase LL3_02915 IPR005671 2-isopropylmalate synthase, bacterial-type LL3_02916 IPR013023 Ketol-acid reductoisomerase LL3_02916 IPR036291 NAD(P)-binding domain superfamily LL3_02916 IPR014359 Ketol-acid reductoisomerase, prokaryotic LL3_02916 IPR013116 Ketol-acid reductoisomerase, N-terminal LL3_02916 IPR000506 Ketol-acid reductoisomerase, C-terminal LL3_02916 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily LL3_02917 IPR039557 AHAS, ACT domain LL3_02917 IPR004789 Acetolactate synthase, small subunit LL3_02917 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal LL3_02917 IPR019455 Acetolactate synthase, small subunit, C-terminal LL3_02917 IPR002912 ACT domain LL3_02918 IPR039368 Acetolactate synthase large subunit, TPP binding domain LL3_02918 IPR029035 DHS-like NAD/FAD-binding domain superfamily LL3_02918 IPR029061 Thiamin diphosphate-binding fold LL3_02918 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding LL3_02918 IPR012000 Thiamine pyrophosphate enzyme, central domain LL3_02918 IPR012846 Acetolactate synthase, large subunit, biosynthetic LL3_02918 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain LL3_02922 IPR000979 Phosphodiesterase MJ0936/Vps29 LL3_02922 IPR024654 Calcineurin-like phosphoesterase domain, lpxH-type LL3_02922 IPR029052 Metallo-dependent phosphatase-like LL3_02922 IPR041802 YfcE-like, metallophosphatase domain LL3_02922 IPR020935 Phosphodiesterase YfcE, conserved site LL3_02923 IPR002637 Ham1-like protein LL3_02923 IPR020922 dITP/XTP pyrophosphatase LL3_02923 IPR029001 Inosine triphosphate pyrophosphatase-like LL3_02924 IPR015847 Exoribonuclease, phosphorolytic domain 2 LL3_02924 IPR027408 PNPase/RNase PH domain superfamily LL3_02924 IPR036345 Exoribonuclease, PH domain 2 superfamily LL3_02924 IPR020568 Ribosomal protein S5 domain 2-type fold LL3_02924 IPR002381 Ribonuclease PH, bacterial-type LL3_02924 IPR018336 Ribonuclease PH, conserved site LL3_02924 IPR001247 Exoribonuclease, phosphorolytic domain 1 LL3_02925 IPR019606 GerMN domain LL3_02926 IPR018187 Asp/Glu racemase, active site 1 LL3_02926 IPR033134 Asp/Glu racemase, active site 2 LL3_02926 IPR001920 Asp/Glu racemase LL3_02926 IPR015942 Asp/Glu/hydantoin racemase LL3_02926 IPR004391 Glutamate racemase LL3_02927 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_02927 IPR000835 MarR-type HTH domain LL3_02927 IPR036390 Winged helix DNA-binding domain superfamily LL3_02929 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_02929 IPR000792 Transcription regulator LuxR, C-terminal LL3_02929 IPR016032 Signal transduction response regulator, C-terminal effector LL3_02930 IPR029069 HotDog domain superfamily LL3_02930 IPR006683 Thioesterase domain LL3_02931 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal LL3_02931 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site LL3_02931 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein LL3_02931 IPR012675 Beta-grasp domain superfamily LL3_02931 IPR009051 Alpha-helical ferredoxin LL3_02931 IPR036010 2Fe-2S ferredoxin-like superfamily LL3_02931 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain LL3_02932 IPR036188 FAD/NAD(P)-binding domain superfamily LL3_02932 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site LL3_02932 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily LL3_02932 IPR011280 Succinate dehydrogenase/fumarate reductase flavoprotein subunit, low-GC Gram-positive bacteria LL3_02932 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily LL3_02932 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain LL3_02932 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal LL3_02933 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit LL3_02933 IPR016002 Succinate dehydrogenase cytochrome b558 subunit, Firmicute LL3_02933 IPR011138 Succinate dehydrogenase cytochrome b558 subunit LL3_02933 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit LL3_02934 IPR024096 NO signalling/Golgi transport ligand-binding domain superfamily LL3_02934 IPR019642 Protein of unknown function DUF2507 LL3_02935 IPR005260 Aspartate kinase, monofunctional class LL3_02935 IPR001048 Aspartate/glutamate/uridylate kinase LL3_02935 IPR002912 ACT domain LL3_02935 IPR041740 Aspartokinase catalytic domain LL3_02935 IPR036393 Acetylglutamate kinase-like superfamily LL3_02935 IPR027795 CASTOR, ACT domain LL3_02935 IPR018042 Aspartate kinase, conserved site LL3_02935 IPR001341 Aspartate kinase LL3_02936 IPR001943 UVR domain LL3_02936 IPR000305 GIY-YIG endonuclease LL3_02936 IPR035901 GIY-YIG endonuclease superfamily LL3_02936 IPR036876 UVR domain superfamily LL3_02936 IPR010994 RuvA domain 2-like LL3_02936 IPR001162 UvrC family homology region LL3_02936 IPR038476 UvrC homology region 2 superfamily LL3_02936 IPR004791 UvrABC system, subunit C LL3_02937 IPR005746 Thioredoxin LL3_02937 IPR036249 Thioredoxin-like superfamily LL3_02937 IPR017937 Thioredoxin, conserved site LL3_02937 IPR013766 Thioredoxin domain LL3_02938 IPR010720 Alpha-L-arabinofuranosidase, C-terminal LL3_02938 IPR013780 Glycosyl hydrolase, all-beta LL3_02938 IPR017853 Glycoside hydrolase superfamily LL3_02939 IPR029035 DHS-like NAD/FAD-binding domain superfamily LL3_02939 IPR033947 Electron transfer flavoprotein, alpha subunit, N-terminal LL3_02939 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal LL3_02939 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site LL3_02939 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LL3_02939 IPR001308 Electron transfer flavoprotein alpha subunit/FixB LL3_02939 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal LL3_02940 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal LL3_02940 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site LL3_02940 IPR033948 Electron transfer flavoprotein, beta subunit, N-terminal LL3_02940 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LL3_02940 IPR012255 Electron transfer flavoprotein, beta subunit LL3_02941 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site LL3_02941 IPR029045 ClpP/crotonase-like domain superfamily LL3_02941 IPR001753 Enoyl-CoA hydratase/isomerase LL3_02942 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily LL3_02942 IPR001647 DNA-binding HTH domain, TetR-type LL3_02942 IPR009057 Homeobox-like domain superfamily LL3_02942 IPR013570 Transcription regulator YsiA, C-terminal LL3_02943 IPR042099 AMP-dependent synthetase-like superfamily LL3_02943 IPR000873 AMP-dependent synthetase/ligase LL3_02943 IPR020845 AMP-binding, conserved site LL3_02943 IPR025110 AMP-binding enzyme, C-terminal domain LL3_02944 IPR024250 Protein of unknown function DUF2711 LL3_02946 IPR007140 Protein of unknown function DUF350 LL3_02947 IPR007696 DNA mismatch repair protein MutS, core LL3_02947 IPR000432 DNA mismatch repair protein MutS, C-terminal LL3_02947 IPR036063 Smr domain superfamily LL3_02947 IPR002625 Smr domain LL3_02947 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02947 IPR005747 Endonuclease MutS2 LL3_02947 IPR036187 DNA mismatch repair protein MutS, core domain superfamily LL3_02948 IPR003141 Polymerase/histidinol phosphatase, N-terminal LL3_02948 IPR016195 Polymerase/histidinol phosphatase-like LL3_02948 IPR029398 DNA polymerase beta, thumb domain LL3_02948 IPR022311 Uncharacterised conserved protein UCP005047, YshC LL3_02948 IPR002054 DNA-directed DNA polymerase X LL3_02948 IPR010996 DNA polymerase beta-like, N-terminal domain LL3_02948 IPR027421 DNA polymerase lambda lyase domain superfamily LL3_02948 IPR004013 PHP domain LL3_02948 IPR037160 DNA polymerase, thumb domain superfamily LL3_02948 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 LL3_02949 IPR003825 Colicin V production, CvpA LL3_02950 IPR007838 Cell division protein ZapA-like LL3_02950 IPR023688 Cell division protein ZapA, firmicutes LL3_02950 IPR036192 Cell division protein ZapA-like superfamily LL3_02951 IPR012295 TBP domain superfamily LL3_02951 IPR036397 Ribonuclease H superfamily LL3_02951 IPR024568 Ribonuclease HIII, N-terminal LL3_02951 IPR012337 Ribonuclease H-like superfamily LL3_02951 IPR004641 Ribonuclease HIII LL3_02951 IPR024567 Ribonuclease HII/HIII domain LL3_02951 IPR001352 Ribonuclease HII/HIII LL3_02952 IPR005146 B3/B4 tRNA-binding domain LL3_02952 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily LL3_02952 IPR012340 Nucleic acid-binding, OB-fold LL3_02952 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 LL3_02952 IPR041616 Phenylalanyl tRNA synthetase beta chain, core domain LL3_02952 IPR002547 tRNA-binding domain LL3_02952 IPR033714 Phenylalanly tRNA synthetase, tRNA-binding-domain LL3_02952 IPR005147 tRNA synthetase, B5-domain LL3_02952 IPR009061 Putative DNA-binding domain superfamily LL3_02952 IPR005121 Ferrodoxin-fold anticodon-binding domain LL3_02952 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit LL3_02953 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm LL3_02953 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial LL3_02953 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal LL3_02953 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit LL3_02953 IPR006195 Aminoacyl-tRNA synthetase, class II LL3_02953 IPR002319 Phenylalanyl-tRNA synthetase LL3_02955 IPR029064 50S ribosomal protein L30e-like LL3_02955 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal LL3_02955 IPR029028 Alpha/beta knot methyltransferases LL3_02955 IPR001537 tRNA/rRNA methyltransferase, SpoU type LL3_02955 IPR013123 RNA 2-O ribose methyltransferase, substrate binding LL3_02956 IPR017525 Small, acid-soluble spore protein I LL3_02957 IPR041522 CdaR, GGDEF-like domain LL3_02957 IPR042070 PucR C-terminal helix-turn-helix domain superfamily LL3_02957 IPR025736 PucR C-terminal helix-turn-helix domain LL3_02957 IPR008599 Putative sugar diacid recognition LL3_02958 IPR004490 Glycolate oxidase subunit GlcD LL3_02958 IPR006094 FAD linked oxidase, N-terminal LL3_02958 IPR016164 FAD-linked oxidase-like, C-terminal LL3_02958 IPR036318 FAD-binding, type PCMH-like superfamily LL3_02958 IPR004113 FAD-linked oxidase, C-terminal LL3_02958 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 LL3_02958 IPR016166 FAD-binding domain, PCMH-type LL3_02959 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain LL3_02959 IPR004017 Cysteine-rich domain LL3_02959 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site LL3_02959 IPR012257 Glycolate oxidase, iron-sulphur subunit LL3_02959 IPR009051 Alpha-helical ferredoxin LL3_02960 IPR003706 CstA, N-terminal domain LL3_02960 IPR025299 CstA, C-terminal domain LL3_02961 IPR017853 Glycoside hydrolase superfamily LL3_02961 IPR013780 Glycosyl hydrolase, all-beta LL3_02961 IPR010720 Alpha-L-arabinofuranosidase, C-terminal LL3_02962 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LL3_02962 IPR035906 MetI-like superfamily LL3_02963 IPR035906 MetI-like superfamily LL3_02963 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LL3_02964 IPR006059 Bacterial extracellular solute-binding protein LL3_02965 IPR023003 Glycerol-1-phosphate dehydrogenase, bacteria LL3_02965 IPR032837 Glycerol-1-phosphate dehydrogenase LL3_02966 IPR006357 HAD-superfamily hydrolase, subfamily IIA LL3_02966 IPR023214 HAD superfamily LL3_02966 IPR036412 HAD-like superfamily LL3_02967 IPR001303 Class II aldolase/adducin N-terminal LL3_02967 IPR036409 Class II aldolase/adducin N-terminal domain superfamily LL3_02967 IPR004661 L-ribulose-5-phosphate 4-epimerase LL3_02968 IPR018484 Carbohydrate kinase, FGGY, N-terminal LL3_02968 IPR018485 Carbohydrate kinase, FGGY, C-terminal LL3_02968 IPR005929 Ribulokinase LL3_02968 IPR000577 Carbohydrate kinase, FGGY LL3_02968 IPR018483 Carbohydrate kinase, FGGY, conserved site LL3_02969 IPR003762 L-arabinose isomerase LL3_02969 IPR009015 L-fucose isomerase, N-terminal/central domain superfamily LL3_02969 IPR024664 L-arabinose isomerase, C-terminal LL3_02969 IPR038583 L-arabinose isomerase, N-terminal domain superfamily LL3_02969 IPR004216 L-fucose/L-arabinose isomerase, C-terminal LL3_02970 IPR006710 Glycoside hydrolase, family 43 LL3_02970 IPR016840 Glycoside hydrolase, family 43, endo-1, 5-alpha-L-arabinosidase LL3_02970 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily LL3_02971 IPR008007 Peptidase M42 LL3_02971 IPR023367 Peptidase M42, domain 2 LL3_02973 IPR010718 Protein of unknown function DUF1294 LL3_02974 IPR005813 Ribosomal protein L20 LL3_02974 IPR035566 Ribosomal protein L20, C-terminal LL3_02975 IPR019814 Translation initiation factor 3, N-terminal LL3_02975 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily LL3_02975 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily LL3_02975 IPR019813 Translation initiation factor 3, conserved site LL3_02975 IPR001288 Translation initiation factor 3 LL3_02975 IPR019815 Translation initiation factor 3, C-terminal LL3_02976 IPR024891 Antiholin-like protein LrgB LL3_02976 IPR007300 CidB/LrgB family LL3_02977 IPR005538 LrgA/CidA family LL3_02977 IPR023736 Antiholin-like protein LrgA LL3_02978 IPR001789 Signal transduction response regulator, receiver domain LL3_02978 IPR007492 LytTR DNA-binding domain LL3_02978 IPR011006 CheY-like superfamily LL3_02979 IPR029016 GAF-like domain superfamily LL3_02979 IPR010559 Signal transduction histidine kinase, internal region LL3_02979 IPR003594 Histidine kinase/HSP90-like ATPase LL3_02979 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region LL3_02979 IPR005467 Histidine kinase domain LL3_02979 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_02979 IPR003018 GAF domain LL3_02982 IPR036621 Anticodon-binding domain superfamily LL3_02982 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) LL3_02982 IPR012675 Beta-grasp domain superfamily LL3_02982 IPR033728 Threonine-tRNA ligase catalytic core domain LL3_02982 IPR004154 Anticodon-binding LL3_02982 IPR012947 Threonyl/alanyl tRNA synthetase, SAD LL3_02982 IPR012676 TGS-like LL3_02982 IPR002320 Threonine-tRNA ligase, class IIa LL3_02982 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily LL3_02982 IPR004095 TGS LL3_02982 IPR006195 Aminoacyl-tRNA synthetase, class II LL3_02984 IPR014199 Sporulation protein YtxC LL3_02985 IPR015414 Transmembrane protein TMEM64 LL3_02985 IPR032816 SNARE associated Golgi protein LL3_02986 IPR003593 AAA+ ATPase domain LL3_02986 IPR009928 Primosomal DnaI, N-terminal LL3_02986 IPR002611 IstB-like ATP-binding protein LL3_02986 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02987 IPR006343 DnaD domain LL3_02988 IPR003796 Ribonucleotide reductase regulator NrdR-like LL3_02988 IPR005144 ATP-cone domain LL3_02989 IPR016067 S-adenosylmethionine decarboxylase, core LL3_02989 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic LL3_02989 IPR017716 S-adenosylmethionine decarboxylase proenzyme LL3_02990 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family LL3_02990 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site LL3_02990 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain LL3_02990 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain LL3_02990 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I LL3_02990 IPR036291 NAD(P)-binding domain superfamily LL3_02991 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_02991 IPR002577 Helix-turn-helix, HxlR type LL3_02991 IPR036390 Winged helix DNA-binding domain superfamily LL3_02992 IPR036259 MFS transporter superfamily LL3_02992 IPR020846 Major facilitator superfamily domain LL3_02992 IPR011701 Major facilitator superfamily LL3_02993 IPR023210 NADP-dependent oxidoreductase domain LL3_02993 IPR018170 Aldo/keto reductase, conserved site LL3_02993 IPR020471 Aldo/keto reductase LL3_02993 IPR036812 NADP-dependent oxidoreductase domain superfamily LL3_02994 IPR001977 Dephospho-CoA kinase LL3_02994 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_02995 IPR014205 Sporulation protein YtaF LL3_02995 IPR003810 Putative manganese efflux pump LL3_02996 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site LL3_02996 IPR020629 Formamidopyrimidine-DNA glycosylase LL3_02996 IPR010663 Zinc finger, FPG/IleRS-type LL3_02996 IPR000214 Zinc finger, DNA glycosylase/AP lyase-type LL3_02996 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding LL3_02996 IPR010979 Ribosomal protein S13-like, H2TH LL3_02996 IPR035937 MutM-like, N-terminal LL3_02996 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain LL3_02997 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal LL3_02997 IPR002421 5'-3' exonuclease, N-terminal LL3_02997 IPR002562 3'-5' exonuclease domain LL3_02997 IPR018320 DNA polymerase 1 LL3_02997 IPR036397 Ribonuclease H superfamily LL3_02997 IPR012337 Ribonuclease H-like superfamily LL3_02997 IPR029060 PIN-like domain superfamily LL3_02997 IPR020045 DNA polymerase I-like, H3TH domain LL3_02997 IPR036279 5'-3' exonuclease, C-terminal domain superfamily LL3_02997 IPR001098 DNA-directed DNA polymerase, family A, palm domain LL3_02997 IPR008918 Helix-hairpin-helix motif, class 2 LL3_02997 IPR002298 DNA polymerase A LL3_02997 IPR019760 DNA-directed DNA polymerase, family A, conserved site LL3_02998 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LL3_02998 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LL3_02998 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_02998 IPR003594 Histidine kinase/HSP90-like ATPase LL3_02998 IPR013767 PAS fold LL3_02998 IPR031967 PhoR, single Cache-like domain LL3_02998 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LL3_02998 IPR035965 PAS domain superfamily LL3_02998 IPR000014 PAS domain LL3_02998 IPR005467 Histidine kinase domain LL3_02999 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_02999 IPR039420 Transcriptional regulatory protein WalR-like LL3_02999 IPR001789 Signal transduction response regulator, receiver domain LL3_02999 IPR001867 OmpR/PhoB-type DNA-binding domain LL3_02999 IPR011006 CheY-like superfamily LL3_02999 IPR016032 Signal transduction response regulator, C-terminal effector LL3_03000 IPR022383 Lactate/malate dehydrogenase, C-terminal LL3_03000 IPR001557 L-lactate/malate dehydrogenase LL3_03000 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal LL3_03000 IPR036291 NAD(P)-binding domain superfamily LL3_03000 IPR011275 Malate dehydrogenase, type 3 LL3_03000 IPR001236 Lactate/malate dehydrogenase, N-terminal LL3_03001 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site LL3_03001 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic LL3_03001 IPR024084 Isopropylmalate dehydrogenase-like domain LL3_03002 IPR019810 Citrate synthase active site LL3_03002 IPR002020 Citrate synthase LL3_03002 IPR016143 Citrate synthase-like, small alpha subdomain LL3_03002 IPR011278 2-methylcitrate synthase/citrate synthase type I LL3_03002 IPR016142 Citrate synthase-like, large alpha subdomain LL3_03002 IPR036969 Citrate synthase superfamily LL3_03002 IPR024176 Citrate synthase, bacterial-type LL3_03003 IPR007382 Uncharacterised protein family UPF0756, transmembrame LL3_03004 IPR002549 Transmembrane protein TqsA-like LL3_03004 IPR014227 Putative transport protein YtvI-like LL3_03005 IPR007313 FxsA cytoplasmic membrane protein LL3_03006 IPR018209 Pyruvate kinase, active site LL3_03006 IPR036918 Pyruvate kinase, C-terminal domain superfamily LL3_03006 IPR015806 Pyruvate kinase, insert domain superfamily LL3_03006 IPR011037 Pyruvate kinase-like, insert domain superfamily LL3_03006 IPR015795 Pyruvate kinase, C-terminal LL3_03006 IPR036637 Phosphohistidine domain superfamily LL3_03006 IPR015793 Pyruvate kinase, barrel LL3_03006 IPR001697 Pyruvate kinase LL3_03006 IPR008279 PEP-utilising enzyme, mobile domain LL3_03006 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily LL3_03006 IPR040442 Pyruvate kinase-like domain superfamily LL3_03007 IPR015912 Phosphofructokinase, conserved site LL3_03007 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic LL3_03007 IPR000023 Phosphofructokinase domain LL3_03007 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type LL3_03007 IPR022953 ATP-dependent 6-phosphofructokinase LL3_03007 IPR035966 Phosphofructokinase superfamily LL3_03008 IPR001095 Acetyl-CoA carboxylase, alpha subunit LL3_03008 IPR029045 ClpP/crotonase-like domain superfamily LL3_03008 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal LL3_03009 IPR034733 Acetyl-CoA carboxylase LL3_03009 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit LL3_03009 IPR029045 ClpP/crotonase-like domain superfamily LL3_03009 IPR041010 Acetyl-coA carboxylase zinc finger domain LL3_03009 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal LL3_03011 IPR037062 Malic enzyme, N-terminal domain superfamily LL3_03011 IPR036291 NAD(P)-binding domain superfamily LL3_03011 IPR015884 Malic enzyme, conserved site LL3_03011 IPR012302 Malic enzyme, NAD-binding LL3_03011 IPR012301 Malic enzyme, N-terminal domain LL3_03011 IPR001891 Malic oxidoreductase LL3_03012 IPR016195 Polymerase/histidinol phosphatase-like LL3_03012 IPR004805 DNA polymerase III, alpha subunit LL3_03012 IPR040982 DNA polymerase III alpha subunit finger domain LL3_03012 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type LL3_03012 IPR003141 Polymerase/histidinol phosphatase, N-terminal LL3_03012 IPR041931 Bacterial DNA polymerase III alpha subunit, thumb domain LL3_03012 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain LL3_03012 IPR004013 PHP domain LL3_03012 IPR029460 DNA polymerase, helix-hairpin-helix motif LL3_03013 IPR025689 Sporulation protein YtrH LL3_03016 IPR003156 DHHA1 domain LL3_03016 IPR001667 DDH domain LL3_03016 IPR038763 DHH phosphoesterase superfamily LL3_03017 IPR025618 YtpI-like protein LL3_03018 IPR029069 HotDog domain superfamily LL3_03018 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_03018 IPR000524 Transcription regulator HTH, GntR LL3_03018 IPR006683 Thioesterase domain LL3_03018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily LL3_03018 IPR036390 Winged helix DNA-binding domain superfamily LL3_03018 IPR000644 CBS domain LL3_03018 IPR010766 DRTGG LL3_03019 IPR001279 Metallo-beta-lactamase LL3_03019 IPR022877 Protein of unknown funcion UPF0173 LL3_03019 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like LL3_03020 IPR036291 NAD(P)-binding domain superfamily LL3_03020 IPR002347 Short-chain dehydrogenase/reductase SDR LL3_03022 IPR000362 Fumarate lyase family LL3_03022 IPR020557 Fumarate lyase, conserved site LL3_03022 IPR008948 L-Aspartase-like LL3_03022 IPR024083 Fumarase/histidase, N-terminal LL3_03022 IPR029419 Argininosuccinate lyase, C-terminal LL3_03022 IPR022761 Fumarate lyase, N-terminal LL3_03022 IPR009049 Argininosuccinate lyase LL3_03023 IPR001518 Argininosuccinate synthase LL3_03023 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LL3_03023 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body LL3_03023 IPR023434 Argininosuccinate synthase, type 1 subfamily LL3_03023 IPR018223 Argininosuccinate synthase, conserved site LL3_03024 IPR036425 MoaB/Mog-like domain superfamily LL3_03024 IPR001453 MoaB/Mog domain LL3_03024 IPR008284 Molybdenum cofactor biosynthesis, conserved site LL3_03024 IPR012245 Molybdenum cofactor biosynthesis protein MoaB LL3_03025 IPR004372 Acetate/propionate kinase LL3_03025 IPR023865 Aliphatic acid kinase, short-chain, conserved site LL3_03025 IPR000890 Aliphatic acid kinase, short-chain LL3_03026 IPR016843 S-adenosyl-L-methionine dependent adenine methyltransferase, bacteria, predicted LL3_03026 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_03026 IPR003356 DNA methylase, adenine-specific LL3_03027 IPR018219 Thiol peroxidase conserved site LL3_03027 IPR002065 Thiol peroxidase Tpx LL3_03027 IPR013766 Thioredoxin domain LL3_03027 IPR036249 Thioredoxin-like superfamily LL3_03027 IPR013740 Redoxin LL3_03028 IPR014229 Sporulation protein YtfJ LL3_03029 IPR021338 Protein of unknown function DUF2953 LL3_03030 IPR010432 RDD LL3_03031 IPR029045 ClpP/crotonase-like domain superfamily LL3_03031 IPR004635 Peptidase S49, SppA LL3_03031 IPR002142 Peptidase S49 LL3_03032 IPR002504 NAD kinase LL3_03032 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal LL3_03032 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily LL3_03032 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal LL3_03033 IPR011059 Metal-dependent hydrolase, composite domain superfamily LL3_03033 IPR032466 Metal-dependent hydrolase LL3_03033 IPR033932 YtcJ like LL3_03033 IPR013108 Amidohydrolase 3 LL3_03034 IPR000873 AMP-dependent synthetase/ligase LL3_03034 IPR042099 AMP-dependent synthetase-like superfamily LL3_03034 IPR020845 AMP-binding, conserved site LL3_03034 IPR025110 AMP-binding enzyme, C-terminal domain LL3_03035 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site LL3_03035 IPR038300 SASP, alpha/beta-type superfamily LL3_03035 IPR001448 Small acid-soluble spore protein, alpha/beta-type LL3_03036 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LL3_03036 IPR020536 Thil, AANH domain LL3_03036 IPR003720 tRNA sulfurtransferase ThiI LL3_03036 IPR004114 THUMP domain LL3_03037 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_03037 IPR015424 Pyridoxal phosphate-dependent transferase LL3_03037 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_03037 IPR000192 Aminotransferase class V domain LL3_03037 IPR016454 Cysteine desulfurase LL3_03038 IPR004685 Branched-chain amino acid transport system II carrier protein LL3_03039 IPR010379 Septation ring formation regulator EzrA LL3_03041 IPR004013 PHP domain LL3_03041 IPR010140 Histidinol phosphate phosphatase, HisJ LL3_03041 IPR016195 Polymerase/histidinol phosphatase-like LL3_03042 IPR009057 Homeobox-like domain superfamily LL3_03042 IPR023772 DNA-binding HTH domain, TetR-type, conserved site LL3_03042 IPR001647 DNA-binding HTH domain, TetR-type LL3_03043 IPR000614 Free Met sulfoxide reductase conserved site LL3_03043 IPR029016 GAF-like domain superfamily LL3_03043 IPR003018 GAF domain LL3_03044 IPR029787 Nucleotide cyclase LL3_03044 IPR000160 GGDEF domain LL3_03044 IPR029016 GAF-like domain superfamily LL3_03046 IPR018079 Ribosomal protein S4, conserved site LL3_03046 IPR005709 Ribosomal protein S4, bacterial-type LL3_03046 IPR001912 Ribosomal protein S4/S9, N-terminal LL3_03046 IPR036986 RNA-binding S4 domain superfamily LL3_03046 IPR022801 Ribosomal protein S4/S9 LL3_03046 IPR002942 RNA-binding S4 domain LL3_03047 IPR017938 Riboflavin synthase-like beta-barrel LL3_03047 IPR001433 Oxidoreductase FAD/NAD(P)-binding LL3_03047 IPR023950 Flavohemoprotein LL3_03047 IPR012292 Globin/Protoglobin LL3_03047 IPR009050 Globin-like superfamily LL3_03047 IPR017927 FAD-binding domain, ferredoxin reductase-type LL3_03047 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain LL3_03047 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain LL3_03047 IPR000971 Globin LL3_03048 IPR002818 DJ-1/PfpI LL3_03048 IPR029062 Class I glutamine amidotransferase-like LL3_03048 IPR006286 Deglycase PfpI LL3_03052 IPR002524 Cation efflux protein LL3_03052 IPR027470 Cation efflux protein, cytoplasmic domain LL3_03052 IPR036837 Cation efflux protein, cytoplasmic domain superfamily LL3_03052 IPR027469 Cation efflux transmembrane domain superfamily LL3_03053 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_03053 IPR036390 Winged helix DNA-binding domain superfamily LL3_03053 IPR021586 Transcription regulator TrmB, C-terminal LL3_03053 IPR002831 Transcription regulator TrmB, N-terminal LL3_03054 IPR004471 Branched-chain amino acid transport, AzlC LL3_03054 IPR011606 Branched-chain amino acid transport, permease LL3_03057 IPR002307 Tyrosine-tRNA ligase LL3_03057 IPR036986 RNA-binding S4 domain superfamily LL3_03057 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site LL3_03057 IPR002942 RNA-binding S4 domain LL3_03057 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LL3_03057 IPR002305 Aminoacyl-tRNA synthetase, class Ic LL3_03057 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 LL3_03057 IPR024088 Tyrosine-tRNA ligase, bacterial-type LL3_03058 IPR000873 AMP-dependent synthetase/ligase LL3_03058 IPR025110 AMP-binding enzyme, C-terminal domain LL3_03058 IPR020845 AMP-binding, conserved site LL3_03058 IPR042099 AMP-dependent synthetase-like superfamily LL3_03059 IPR016181 Acyl-CoA N-acyltransferase LL3_03059 IPR024699 Acetoin utilization protein AcuA LL3_03059 IPR000182 GNAT domain LL3_03060 IPR000644 CBS domain LL3_03061 IPR037138 Histone deacetylase domain superfamily LL3_03061 IPR023696 Ureohydrolase domain superfamily LL3_03061 IPR023801 Histone deacetylase domain LL3_03061 IPR000286 Histone deacetylase family LL3_03061 IPR003085 Acetoin utilization protein AcuC LL3_03062 IPR036737 OmpA-like domain superfamily LL3_03062 IPR006665 OmpA-like domain LL3_03062 IPR025713 Motility protein B, N-terminal domain LL3_03063 IPR002898 MotA/TolQ/ExbB proton channel LL3_03063 IPR000540 Flagellar motor protein MotA, conserved site LL3_03064 IPR028082 Periplasmic binding protein-like I LL3_03064 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LL3_03064 IPR006377 Catabolite control protein A LL3_03064 IPR000843 LacI-type HTH domain LL3_03066 IPR013785 Aldolase-type TIM barrel LL3_03066 IPR002701 Chorismate mutase II, prokaryotic-type LL3_03066 IPR036979 Chorismate mutase domain superfamily LL3_03066 IPR010954 Chorismate mutase, Firmicutes/Deinococcus LL3_03066 IPR006268 Phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2 LL3_03066 IPR006218 DAHP synthetase I/KDSA LL3_03067 IPR022551 Protein of unknown function DUF2847 LL3_03067 IPR036249 Thioredoxin-like superfamily LL3_03068 IPR024623 Uncharacterised protein family YtxH LL3_03069 IPR009293 Uncharacterised protein family UPF0478 LL3_03070 IPR036615 Mur ligase, C-terminal domain superfamily LL3_03070 IPR000713 Mur ligase, N-terminal catalytic domain LL3_03070 IPR013221 Mur ligase, central LL3_03070 IPR036565 Mur-like, catalytic domain superfamily LL3_03070 IPR004101 Mur ligase, C-terminal LL3_03070 IPR005758 UDP-N-acetylmuramate--L-alanine ligase LL3_03072 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_03072 IPR003593 AAA+ ATPase domain LL3_03072 IPR041027 FtsK alpha domain LL3_03072 IPR002543 FtsK domain LL3_03072 IPR018541 FtsK gamma domain LL3_03072 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03072 IPR036390 Winged helix DNA-binding domain superfamily LL3_03073 IPR037154 YtpR-like superfamily LL3_03073 IPR033714 Phenylalanly tRNA synthetase, tRNA-binding-domain LL3_03073 IPR002547 tRNA-binding domain LL3_03073 IPR012340 Nucleic acid-binding, OB-fold LL3_03073 IPR027855 Domain of unknown function DUF4479 LL3_03074 IPR010838 Protein of unknown unction DUF1444 LL3_03075 IPR036249 Thioredoxin-like superfamily LL3_03075 IPR013766 Thioredoxin domain LL3_03076 IPR019884 YtoQ family protein LL3_03077 IPR008007 Peptidase M42 LL3_03077 IPR023367 Peptidase M42, domain 2 LL3_03078 IPR025711 PepSY domain LL3_03079 IPR001891 Malic oxidoreductase LL3_03079 IPR037062 Malic enzyme, N-terminal domain superfamily LL3_03079 IPR012301 Malic enzyme, N-terminal domain LL3_03079 IPR015884 Malic enzyme, conserved site LL3_03079 IPR012302 Malic enzyme, NAD-binding LL3_03079 IPR036291 NAD(P)-binding domain superfamily LL3_03080 IPR001279 Metallo-beta-lactamase LL3_03080 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like LL3_03081 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type LL3_03081 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_03082 IPR025547 YtzH-like protein LL3_03083 IPR002575 Aminoglycoside phosphotransferase LL3_03083 IPR011009 Protein kinase-like domain superfamily LL3_03084 IPR005218 Diacylglycerol/lipid kinase LL3_03084 IPR001206 Diacylglycerol kinase, catalytic domain LL3_03084 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily LL3_03084 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal LL3_03085 IPR012397 Pullulan 6-glucanohydrolase LL3_03086 IPR004175 RNA 2',3'-cyclic phosphodiesterase LL3_03086 IPR009097 Cyclic phosphodiesterase LL3_03087 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme LL3_03087 IPR001926 Pyridoxal-phosphate dependent enzyme LL3_03087 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site LL3_03087 IPR005859 Cysteine synthase CysK LL3_03087 IPR005856 Cysteine synthase LL3_03088 IPR002933 Peptidase M20 LL3_03088 IPR010964 Peptidase M20A, peptidase V-related LL3_03088 IPR036264 Bacterial exopeptidase dimerisation domain LL3_03088 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site LL3_03089 IPR006043 Xanthine/uracil/vitamin C permease LL3_03089 IPR026033 Azaguanine-like transporters LL3_03090 IPR010288 Bacterial ABC transporter EcsB LL3_03091 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03091 IPR003439 ABC transporter-like LL3_03091 IPR003593 AAA+ ATPase domain LL3_03091 IPR017871 ABC transporter, conserved site LL3_03092 IPR036390 Winged helix DNA-binding domain superfamily LL3_03092 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_03092 IPR001034 DeoR-type HTH domain LL3_03093 IPR036986 RNA-binding S4 domain superfamily LL3_03093 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site LL3_03093 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F LL3_03093 IPR006145 Pseudouridine synthase, RsuA/RluA LL3_03093 IPR020103 Pseudouridine synthase, catalytic domain superfamily LL3_03093 IPR002942 RNA-binding S4 domain LL3_03093 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain LL3_03094 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain LL3_03094 IPR002797 Polysaccharide biosynthesis protein LL3_03094 IPR024923 Peptidoglycan biosynthesis protein, SpoVB-type LL3_03095 IPR036188 FAD/NAD(P)-binding domain superfamily LL3_03095 IPR023166 HI0933-like insert domain superfamily LL3_03095 IPR004792 3-Dehydro-bile acid delta(4,6)-reductase-like LL3_03097 IPR000060 BCCT transporter family LL3_03097 IPR018093 BCCT transporter, conserved site LL3_03099 IPR020296 Sporulation protein Cse60 LL3_03104 IPR019802 Glycoside hydrolase, family 4, conserved site LL3_03104 IPR022616 Glycosyl hydrolase, family 4, C-terminal LL3_03104 IPR001088 Glycoside hydrolase, family 4 LL3_03104 IPR036291 NAD(P)-binding domain superfamily LL3_03104 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal LL3_03106 IPR001763 Rhodanese-like domain LL3_03106 IPR036873 Rhodanese-like domain superfamily LL3_03107 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LL3_03107 IPR015413 Methionyl/Leucyl tRNA synthetase LL3_03107 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding LL3_03107 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding LL3_03107 IPR002300 Aminoacyl-tRNA synthetase, class Ia LL3_03107 IPR002302 Leucine-tRNA ligase LL3_03107 IPR025709 Leucyl-tRNA synthetase, editing domain LL3_03107 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain LL3_03107 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site LL3_03108 IPR025353 Protein of unknown function DUF4257) LL3_03110 IPR035965 PAS domain superfamily LL3_03110 IPR001610 PAC motif LL3_03110 IPR000014 PAS domain LL3_03110 IPR000700 PAS-associated, C-terminal LL3_03110 IPR036513 STAS domain superfamily LL3_03110 IPR002645 STAS domain LL3_03111 IPR036259 MFS transporter superfamily LL3_03111 IPR020846 Major facilitator superfamily domain LL3_03111 IPR011701 Major facilitator superfamily LL3_03112 IPR011737 Conserved hypothetical protein CHP02206, TP0381 LL3_03113 IPR003838 ABC transporter permease protein domain LL3_03113 IPR027022 ABC transporter permease protein, BceB-type LL3_03114 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03114 IPR003439 ABC transporter-like LL3_03114 IPR003593 AAA+ ATPase domain LL3_03115 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LL3_03115 IPR003594 Histidine kinase/HSP90-like ATPase LL3_03115 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_03115 IPR005467 Histidine kinase domain LL3_03116 IPR011006 CheY-like superfamily LL3_03116 IPR001867 OmpR/PhoB-type DNA-binding domain LL3_03116 IPR016032 Signal transduction response regulator, C-terminal effector LL3_03116 IPR039420 Transcriptional regulatory protein WalR-like LL3_03116 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_03116 IPR001789 Signal transduction response regulator, receiver domain LL3_03117 IPR025857 MacB-like periplasmic core domain LL3_03117 IPR003838 ABC transporter permease protein domain LL3_03118 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03118 IPR017871 ABC transporter, conserved site LL3_03118 IPR003439 ABC transporter-like LL3_03118 IPR003593 AAA+ ATPase domain LL3_03119 IPR023264 ABC transporter, acetoin utilisation, predicted permease Ytrc/YtrD LL3_03120 IPR023264 ABC transporter, acetoin utilisation, predicted permease Ytrc/YtrD LL3_03121 IPR023264 ABC transporter, acetoin utilisation, predicted permease Ytrc/YtrD LL3_03122 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03122 IPR003593 AAA+ ATPase domain LL3_03122 IPR003439 ABC transporter-like LL3_03123 IPR000524 Transcription regulator HTH, GntR LL3_03123 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_03123 IPR036390 Winged helix DNA-binding domain superfamily LL3_03125 IPR019668 Uncharacterised protein family YtzC LL3_03126 IPR023404 Radical SAM, alpha/beta horseshoe LL3_03126 IPR005911 Protein YhcC-like LL3_03126 IPR007197 Radical SAM LL3_03126 IPR039661 ELP3/YhcC LL3_03126 IPR006638 Elp3/MiaB/NifB LL3_03126 IPR032432 Radical SAM, C-terminal extension LL3_03127 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_03127 IPR010719 Putative rRNA methylase LL3_03129 IPR019712 Tetraprenyl-beta-curcumene synthase YtpB-like LL3_03130 IPR000073 Alpha/beta hydrolase fold-1 LL3_03130 IPR029058 Alpha/Beta hydrolase fold LL3_03130 IPR022742 Serine aminopeptidase, S33 LL3_03131 IPR001451 Hexapeptide repeat LL3_03131 IPR011004 Trimeric LpxA-like superfamily LL3_03132 IPR004841 Amino acid permease/ SLC12A domain LL3_03132 IPR004840 Amino acid permease, conserved site LL3_03133 IPR017932 Glutamine amidotransferase type 2 domain LL3_03133 IPR001962 Asparagine synthase LL3_03133 IPR033738 Asparagine synthase, N-terminal domain LL3_03133 IPR006426 Asparagine synthase, glutamine-hydrolyzing LL3_03133 IPR029055 Nucleophile aminohydrolases, N-terminal LL3_03134 IPR022628 S-adenosylmethionine synthetase, N-terminal LL3_03134 IPR022631 S-adenosylmethionine synthetase, conserved site LL3_03134 IPR022630 S-adenosylmethionine synthetase, C-terminal LL3_03134 IPR022636 S-adenosylmethionine synthetase superfamily LL3_03134 IPR002133 S-adenosylmethionine synthetase LL3_03134 IPR022629 S-adenosylmethionine synthetase, central domain LL3_03135 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal LL3_03135 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising LL3_03135 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal LL3_03135 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site LL3_03136 IPR019699 Protein of unknown function DUF2584 LL3_03136 IPR015947 PUA-like superfamily LL3_03137 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain LL3_03137 IPR029058 Alpha/Beta hydrolase fold LL3_03137 IPR002471 Peptidase S9, serine active site LL3_03139 IPR003593 AAA+ ATPase domain LL3_03139 IPR003439 ABC transporter-like LL3_03139 IPR017871 ABC transporter, conserved site LL3_03139 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03140 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LL3_03140 IPR035906 MetI-like superfamily LL3_03141 IPR015797 NUDIX hydrolase-like domain superfamily LL3_03141 IPR020476 NUDIX hydrolase LL3_03141 IPR000086 NUDIX hydrolase domain LL3_03141 IPR014078 Nucleoside triphosphatase YtkD LL3_03141 IPR020084 NUDIX hydrolase, conserved site LL3_03142 IPR006480 Bacteriophage holin family LL3_03143 IPR012347 Ferritin-like LL3_03143 IPR023188 DNA-binding protein Dps, conserved site LL3_03143 IPR002177 DNA-binding protein Dps LL3_03143 IPR008331 Ferritin/DPS protein domain LL3_03143 IPR009078 Ferritin-like superfamily LL3_03145 IPR032693 YtkA-like domain LL3_03146 IPR037005 S-ribosylhomocysteinase (LuxS) superfamily LL3_03146 IPR003815 S-ribosylhomocysteinase (LuxS) LL3_03146 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like LL3_03147 IPR002696 Putative membrane protein insertion efficiency factor LL3_03148 IPR036874 Carbonic anhydrase superfamily LL3_03148 IPR001765 Carbonic anhydrase LL3_03149 IPR002150 Ribosomal protein L31 LL3_03149 IPR042105 Ribosomal protein L31 superfamily LL3_03149 IPR034704 L28p-like LL3_03149 IPR027493 Ribosomal protein L31 type B LL3_03150 IPR002585 Cytochrome ubiquinol oxidase subunit 1 LL3_03151 IPR003317 Cytochrome ubiquinol oxidase subunit 2 LL3_03152 IPR011437 Domain of unknown function DUF1540 LL3_03154 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal LL3_03154 IPR029017 Enolase-like, N-terminal LL3_03154 IPR036849 Enolase-like, C-terminal domain superfamily LL3_03154 IPR010197 o-Succinylbenzoate synthase, MenC type 2 LL3_03154 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain LL3_03154 IPR029065 Enolase C-terminal domain-like LL3_03155 IPR025110 AMP-binding enzyme, C-terminal domain LL3_03155 IPR020845 AMP-binding, conserved site LL3_03155 IPR000873 AMP-dependent synthetase/ligase LL3_03155 IPR042099 AMP-dependent synthetase-like superfamily LL3_03155 IPR010192 2-succinylbenzoate--CoA ligase LL3_03156 IPR029045 ClpP/crotonase-like domain superfamily LL3_03156 IPR001753 Enoyl-CoA hydratase/isomerase LL3_03156 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB LL3_03156 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site LL3_03156 IPR014748 Enoyl-CoA hydratase, C-terminal LL3_03157 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase LL3_03157 IPR000639 Epoxide hydrolase-like LL3_03157 IPR000073 Alpha/beta hydrolase fold-1 LL3_03157 IPR029058 Alpha/Beta hydrolase fold LL3_03158 IPR029035 DHS-like NAD/FAD-binding domain superfamily LL3_03158 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding LL3_03158 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase LL3_03158 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain LL3_03158 IPR032264 Menaquinone biosynthesis protein MenD, middle domain LL3_03158 IPR029061 Thiamin diphosphate-binding fold LL3_03159 IPR004561 Isochorismate synthase LL3_03159 IPR034681 Isochorismate synthase MenF LL3_03159 IPR015890 Chorismate-utilising enzyme, C-terminal LL3_03159 IPR005801 ADC synthase LL3_03160 IPR037187 DksA, N-terminal domain superfamily LL3_03160 IPR014240 Regulatory protein, YteA family LL3_03160 IPR000962 Zinc finger, DksA/TraR C4-type LL3_03161 IPR038330 TspO/MBR-related superfamily LL3_03161 IPR004307 TspO/MBR-related protein LL3_03163 IPR012651 Thiamine transporter ThiT LL3_03164 IPR031905 Flotillin, C-terminal domain LL3_03164 IPR027705 Flotillin family LL3_03164 IPR001107 Band 7 domain LL3_03164 IPR036013 Band 7/SPFH domain superfamily LL3_03166 IPR034660 DinB/YfiT-like putative metalloenzymes LL3_03166 IPR024775 DinB-like domain LL3_03167 IPR005302 Molybdenum cofactor sulfurase, C-terminal LL3_03167 IPR011037 Pyruvate kinase-like, insert domain superfamily LL3_03168 IPR039697 Iron-type alcohol dehydrogenase-like LL3_03168 IPR018211 Alcohol dehydrogenase, iron-type, conserved site LL3_03168 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA LL3_03170 IPR036390 Winged helix DNA-binding domain superfamily LL3_03170 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_03170 IPR026282 DNA-binding protein, MJ1563 type LL3_03171 IPR034650 YuaB-like LL3_03171 IPR038480 YuaB-like superfamily LL3_03172 IPR036291 NAD(P)-binding domain superfamily LL3_03172 IPR006037 Regulator of K+ conductance, C-terminal LL3_03172 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily LL3_03172 IPR003148 Regulator of K+ conductance, N-terminal LL3_03173 IPR025987 GW domain LL3_03173 IPR038200 GW domain superfamily LL3_03173 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain LL3_03175 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain LL3_03175 IPR017927 FAD-binding domain, ferredoxin reductase-type LL3_03175 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain LL3_03175 IPR017938 Riboflavin synthase-like beta-barrel LL3_03175 IPR001433 Oxidoreductase FAD/NAD(P)-binding LL3_03175 IPR000971 Globin LL3_03175 IPR009050 Globin-like superfamily LL3_03175 IPR012292 Globin/Protoglobin LL3_03175 IPR023950 Flavohemoprotein LL3_03180 IPR013026 Tetratricopeptide repeat-containing domain LL3_03180 IPR011990 Tetratricopeptide-like helical domain superfamily LL3_03180 IPR019734 Tetratricopeptide repeat LL3_03180 IPR040702 Response regulator aspartate phosphatase, N-terminal LL3_03181 IPR003824 Undecaprenyl-diphosphatase UppP LL3_03182 IPR002549 Transmembrane protein TqsA-like LL3_03184 IPR000683 Oxidoreductase, N-terminal LL3_03184 IPR036291 NAD(P)-binding domain superfamily LL3_03184 IPR004104 Oxidoreductase, C-terminal LL3_03185 IPR029062 Class I glutamine amidotransferase-like LL3_03185 IPR006286 Deglycase PfpI LL3_03185 IPR002818 DJ-1/PfpI LL3_03186 IPR033479 Double Cache domain 1 LL3_03186 IPR003660 HAMP domain LL3_03186 IPR029151 Periplasmic sensor-like domain superfamily LL3_03186 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding LL3_03186 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain LL3_03187 IPR033479 Double Cache domain 1 LL3_03187 IPR003660 HAMP domain LL3_03187 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain LL3_03187 IPR029151 Periplasmic sensor-like domain superfamily LL3_03187 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding LL3_03188 IPR029151 Periplasmic sensor-like domain superfamily LL3_03188 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain LL3_03188 IPR033479 Double Cache domain 1 LL3_03188 IPR003660 HAMP domain LL3_03188 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding LL3_03189 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain LL3_03189 IPR003660 HAMP domain LL3_03189 IPR033479 Double Cache domain 1 LL3_03189 IPR029151 Periplasmic sensor-like domain superfamily LL3_03189 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding LL3_03190 IPR020916 Protein-glutamine gamma-glutamyltransferase, bacteria LL3_03192 IPR013785 Aldolase-type TIM barrel LL3_03192 IPR004136 Nitronate monooxygenase LL3_03193 IPR032091 Maltogenic Amylase, C-terminal LL3_03193 IPR013780 Glycosyl hydrolase, all-beta LL3_03193 IPR006047 Glycosyl hydrolase, family 13, catalytic domain LL3_03193 IPR017853 Glycoside hydrolase superfamily LL3_03195 IPR000644 CBS domain LL3_03195 IPR002550 CNNM, transmembrane domain LL3_03195 IPR005170 Transporter-associated domain LL3_03195 IPR016169 FAD-binding, type PCMH, subdomain 2 LL3_03195 IPR036318 FAD-binding, type PCMH-like superfamily LL3_03196 IPR007395 Putative neutral zinc metallopeptidase LL3_03198 IPR038193 Mistic superfamily LL3_03198 IPR021078 Membrane-integrating protein Mistic LL3_03199 IPR003148 Regulator of K+ conductance, N-terminal LL3_03199 IPR036291 NAD(P)-binding domain superfamily LL3_03199 IPR013099 Potassium channel domain LL3_03200 IPR014967 Uncharacterised protein family, YugN-like LL3_03200 IPR036491 YugN-like superfamily LL3_03202 IPR035482 Phosphoglucose isomerase, SIS domain 2 LL3_03202 IPR018189 Phosphoglucose isomerase, conserved site LL3_03202 IPR035476 Phosphoglucose isomerase, SIS domain 1 LL3_03202 IPR001672 Phosphoglucose isomerase (PGI) LL3_03204 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA LL3_03204 IPR018211 Alcohol dehydrogenase, iron-type, conserved site LL3_03205 IPR018211 Alcohol dehydrogenase, iron-type, conserved site LL3_03205 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA LL3_03207 IPR007211 Protein of unknown function DUF378 LL3_03208 IPR022967 RNA-binding domain, S1 LL3_03208 IPR012340 Nucleic acid-binding, OB-fold LL3_03208 IPR003029 S1 domain LL3_03209 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site LL3_03209 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_03209 IPR004839 Aminotransferase, class I/classII LL3_03209 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_03209 IPR015424 Pyridoxal phosphate-dependent transferase LL3_03210 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain LL3_03210 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_03210 IPR019888 Transcription regulator AsnC-type LL3_03210 IPR000485 AsnC-type HTH domain LL3_03210 IPR036390 Winged helix DNA-binding domain superfamily LL3_03210 IPR011008 Dimeric alpha-beta barrel LL3_03211 IPR000073 Alpha/beta hydrolase fold-1 LL3_03211 IPR000639 Epoxide hydrolase-like LL3_03211 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal LL3_03211 IPR029058 Alpha/Beta hydrolase fold LL3_03212 IPR015053 Protein of unknown function DUF1871 LL3_03212 IPR023162 Apc36109-like domain superfamily LL3_03213 IPR027619 Putative C-S lyase LL3_03213 IPR015424 Pyridoxal phosphate-dependent transferase LL3_03213 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_03213 IPR004839 Aminotransferase, class I/classII LL3_03213 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_03214 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LL3_03214 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LL3_03214 IPR003594 Histidine kinase/HSP90-like ATPase LL3_03214 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_03214 IPR005467 Histidine kinase domain LL3_03214 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LL3_03215 IPR038080 Kinase associated protein B superfamily LL3_03215 IPR014916 Kinase associated protein B LL3_03216 IPR036397 Ribonuclease H superfamily LL3_03216 IPR012337 Ribonuclease H-like superfamily LL3_03216 IPR013520 Exonuclease, RNase T/DNA polymerase III LL3_03217 IPR020846 Major facilitator superfamily domain LL3_03217 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG LL3_03217 IPR036259 MFS transporter superfamily LL3_03217 IPR011701 Major facilitator superfamily LL3_03218 IPR001264 Glycosyl transferase, family 51 LL3_03218 IPR012338 Beta-lactamase/transpeptidase-like LL3_03218 IPR001460 Penicillin-binding protein, transpeptidase LL3_03218 IPR023346 Lysozyme-like domain superfamily LL3_03218 IPR036950 Penicillin binding protein transglycosylase domain LL3_03219 IPR007263 Protein of unknown function DUF393 LL3_03220 IPR035289 Protein of unknown function DUF5366 LL3_03221 IPR033463 Single cache domain 3 LL3_03221 IPR000014 PAS domain LL3_03221 IPR013767 PAS fold LL3_03221 IPR005467 Histidine kinase domain LL3_03221 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_03221 IPR003594 Histidine kinase/HSP90-like ATPase LL3_03221 IPR039506 SpoOB, alpha-helical domain LL3_03221 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB LL3_03221 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LL3_03221 IPR029151 Periplasmic sensor-like domain superfamily LL3_03222 IPR001789 Signal transduction response regulator, receiver domain LL3_03222 IPR024187 Signal transduction response regulator, citrate/malate metabolism LL3_03222 IPR011006 CheY-like superfamily LL3_03229 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup LL3_03229 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit LL3_03229 IPR005663 Monovalent cation proton antiporter subunit A LL3_03229 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal LL3_03229 IPR025383 Domain of unknown function DUF4040 LL3_03230 IPR007182 Na+/H+ antiporter MnhB subunit-related protein LL3_03230 IPR005281 Monovalent cation:proton antiporter, subunit B LL3_03231 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like LL3_03232 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit LL3_03232 IPR003918 NADH:ubiquinone oxidoreductase LL3_03232 IPR004775 Na(+)/H(+) antiporter subunit D1 LL3_03233 IPR002758 Na+/H+ antiporter subunit E LL3_03234 IPR007208 Na(+)/H(+) antiporter subunit F-like LL3_03235 IPR005133 Na+/H+ antiporter subunit G LL3_03236 IPR003736 Phenylacetic acid degradation-related domain LL3_03236 IPR006683 Thioesterase domain LL3_03236 IPR029069 HotDog domain superfamily LL3_03237 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_03237 IPR011006 CheY-like superfamily LL3_03237 IPR016032 Signal transduction response regulator, C-terminal effector LL3_03237 IPR000792 Transcription regulator LuxR, C-terminal LL3_03237 IPR001789 Signal transduction response regulator, receiver domain LL3_03238 IPR003594 Histidine kinase/HSP90-like ATPase LL3_03238 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_03238 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain LL3_03238 IPR005467 Histidine kinase domain LL3_03240 IPR033965 Competence Regulatory Protein ComQ LL3_03240 IPR008949 Isoprenoid synthase domain superfamily LL3_03240 IPR000092 Polyprenyl synthetase LL3_03241 IPR012554 Degradation enzyme regulation protein DegQ LL3_03243 IPR016559 Uncharacterised conserved protein UCP009597 LL3_03244 IPR035919 EAL domain superfamily LL3_03244 IPR013976 Metal-dependent hydrolase HDOD LL3_03244 IPR001633 EAL domain LL3_03244 IPR014408 Signal transduction c-di-GMP phosphodiesterase, EAL/HD-GYP domain-containing LL3_03245 IPR006405 Nicotinate phosphoribosyltransferase pncB-type LL3_03245 IPR041619 Nicotinate phosphoribosyltransferase C-terminal domain LL3_03245 IPR013785 Aldolase-type TIM barrel LL3_03245 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal LL3_03245 IPR040727 Nicotinate phosphoribosyltransferase, N-terminal domain LL3_03245 IPR041525 Nicotinate/nicotinamide phosphoribosyltransferase LL3_03245 IPR007229 Nicotinate phosphoribosyltransferase family LL3_03246 IPR000868 Isochorismatase-like LL3_03246 IPR036380 Isochorismatase-like superfamily LL3_03247 IPR029064 50S ribosomal protein L30e-like LL3_03247 IPR012543 Protein of unknown function DUF1694 LL3_03248 IPR020260 Uncharacterised protein family YueH LL3_03249 IPR019618 Spore germination protein GerPA/GerPF LL3_03250 IPR002549 Transmembrane protein TqsA-like LL3_03251 IPR020139 Protein of unknown function DUF2642 LL3_03252 IPR006674 HD domain LL3_03252 IPR003607 HD/PDEase domain LL3_03252 IPR006675 HDIG domain LL3_03253 IPR036291 NAD(P)-binding domain superfamily LL3_03253 IPR020904 Short-chain dehydrogenase/reductase, conserved site LL3_03253 IPR002347 Short-chain dehydrogenase/reductase SDR LL3_03254 IPR018920 ESAT-6 secretion machinery protein EssA/YueC LL3_03254 IPR020212 ESX secretion system protein YueC LL3_03255 IPR023838 Type VII secretion system EsaA LL3_03256 IPR002543 FtsK domain LL3_03256 IPR023839 Firmicutes EssC, C-terminal LL3_03256 IPR022206 Firmicutes EssC, N-terminal LL3_03256 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03257 IPR018778 Type VII secretion system EssB LL3_03258 IPR029071 Ubiquitin-like domain superfamily LL3_03258 IPR014921 EsaB LL3_03258 IPR024962 YukD-like LL3_03259 IPR010310 Type VII secretion system ESAT-6-like LL3_03259 IPR036689 ESAT-6-like superfamily LL3_03261 IPR041522 CdaR, GGDEF-like domain LL3_03261 IPR029016 GAF-like domain superfamily LL3_03261 IPR010312 GTP-sensing transcriptional pleiotropic repressor CodY, N-terminal LL3_03261 IPR025736 PucR C-terminal helix-turn-helix domain LL3_03261 IPR042070 PucR C-terminal helix-turn-helix domain superfamily LL3_03262 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain LL3_03262 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 LL3_03262 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal LL3_03262 IPR036291 NAD(P)-binding domain superfamily LL3_03262 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 LL3_03262 IPR008141 Alanine dehydrogenase LL3_03263 IPR019268 Protein of unknown function DUF2278 LL3_03264 IPR037407 MbtH-like protein LL3_03264 IPR038020 MbtH-like domain superfamily LL3_03264 IPR005153 MbtH-like domain LL3_03265 IPR042099 AMP-dependent synthetase-like superfamily LL3_03265 IPR001242 Condensation domain LL3_03265 IPR020806 Polyketide synthase, phosphopantetheine-binding domain LL3_03265 IPR020802 Polyketide synthase, thioesterase domain LL3_03265 IPR001031 Thioesterase LL3_03265 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily LL3_03265 IPR009081 Phosphopantetheine binding ACP domain LL3_03265 IPR036736 ACP-like superfamily LL3_03265 IPR025110 AMP-binding enzyme, C-terminal domain LL3_03265 IPR020845 AMP-binding, conserved site LL3_03265 IPR000873 AMP-dependent synthetase/ligase LL3_03265 IPR010071 Amino acid adenylation domain LL3_03265 IPR029058 Alpha/Beta hydrolase fold LL3_03266 IPR036380 Isochorismatase-like superfamily LL3_03266 IPR036736 ACP-like superfamily LL3_03266 IPR016291 Isochorismatase LL3_03266 IPR009081 Phosphopantetheine binding ACP domain LL3_03266 IPR000868 Isochorismatase-like LL3_03267 IPR020845 AMP-binding, conserved site LL3_03267 IPR025110 AMP-binding enzyme, C-terminal domain LL3_03267 IPR011963 2,3-dihydroxybenzoate-AMP ligase LL3_03267 IPR000873 AMP-dependent synthetase/ligase LL3_03268 IPR005801 ADC synthase LL3_03268 IPR015890 Chorismate-utilising enzyme, C-terminal LL3_03268 IPR004561 Isochorismate synthase LL3_03269 IPR020904 Short-chain dehydrogenase/reductase, conserved site LL3_03269 IPR002347 Short-chain dehydrogenase/reductase SDR LL3_03269 IPR036291 NAD(P)-binding domain superfamily LL3_03269 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase LL3_03270 IPR029058 Alpha/Beta hydrolase fold LL3_03270 IPR000801 Putative esterase LL3_03271 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily LL3_03271 IPR000572 Oxidoreductase, molybdopterin-binding domain LL3_03272 IPR003784 BioY protein LL3_03273 IPR032813 Putative Na+/H+ antiporter, N-terminal LL3_03273 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal LL3_03274 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B LL3_03274 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal LL3_03274 IPR023042 Peptidase M17, leucine aminopeptidase LL3_03274 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal LL3_03275 IPR003832 Protein of unknown function DUF212 LL3_03276 IPR010611 3D domain LL3_03276 IPR036908 RlpA-like domain superfamily LL3_03277 IPR025917 Putative membrane protein YuiB LL3_03279 IPR023753 FAD/NAD(P)-binding domain LL3_03279 IPR036188 FAD/NAD(P)-binding domain superfamily LL3_03281 IPR022890 Ferredoxin--NADP reductase, type 2 LL3_03281 IPR023753 FAD/NAD(P)-binding domain LL3_03281 IPR036188 FAD/NAD(P)-binding domain superfamily LL3_03283 IPR005994 Guanosine monophosphate reductase, type2 LL3_03283 IPR015875 IMP dehydrogenase / GMP reductase, conserved site LL3_03283 IPR013785 Aldolase-type TIM barrel LL3_03283 IPR001093 IMP dehydrogenase/GMP reductase LL3_03286 IPR003593 AAA+ ATPase domain LL3_03286 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03286 IPR017871 ABC transporter, conserved site LL3_03286 IPR003439 ABC transporter-like LL3_03291 IPR016181 Acyl-CoA N-acyltransferase LL3_03291 IPR000182 GNAT domain LL3_03292 IPR016181 Acyl-CoA N-acyltransferase LL3_03292 IPR000182 GNAT domain LL3_03293 IPR020904 Short-chain dehydrogenase/reductase, conserved site LL3_03293 IPR002347 Short-chain dehydrogenase/reductase SDR LL3_03293 IPR036291 NAD(P)-binding domain superfamily LL3_03294 IPR017870 FeS cluster insertion, C-terminal, conserved site LL3_03294 IPR016092 FeS cluster insertion protein LL3_03294 IPR000361 FeS cluster biogenesis LL3_03294 IPR035903 HesB-like domain superfamily LL3_03295 IPR001653 Diaminopimelate epimerase, DapF LL3_03295 IPR018510 Diaminopimelate epimerase, active site LL3_03296 IPR008276 Concentrative nucleoside transporter LL3_03296 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial LL3_03296 IPR011657 Concentrative nucleoside transporter C-terminal domain LL3_03296 IPR002668 Concentrative nucleoside transporter N-terminal domain LL3_03297 IPR022916 Protein of unknown function UPF0349 LL3_03297 IPR009910 Protein of unknown function DUF1450 LL3_03298 IPR023753 FAD/NAD(P)-binding domain LL3_03298 IPR036188 FAD/NAD(P)-binding domain superfamily LL3_03299 IPR009190 Protein of unknown function DUF1462 LL3_03299 IPR036249 Thioredoxin-like superfamily LL3_03299 IPR038218 YuzD-like superfamily LL3_03300 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal LL3_03300 IPR034904 Fe-S cluster assembly domain superfamily LL3_03301 IPR011042 Six-bladed beta-propeller, TolB-like LL3_03301 IPR029058 Alpha/Beta hydrolase fold LL3_03301 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain LL3_03301 IPR011659 WD40-like Beta Propeller LL3_03302 IPR013750 GHMP kinase, C-terminal domain LL3_03302 IPR000870 Homoserine kinase LL3_03302 IPR020568 Ribosomal protein S5 domain 2-type fold LL3_03302 IPR036554 GHMP kinase, C-terminal domain superfamily LL3_03302 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup LL3_03302 IPR006203 GHMP kinase, ATP-binding, conserved site LL3_03302 IPR006204 GHMP kinase N-terminal domain LL3_03303 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme LL3_03303 IPR004450 Threonine synthase-like LL3_03303 IPR026260 Threonine synthase, bacterial/archaeal LL3_03303 IPR001926 Pyridoxal-phosphate dependent enzyme LL3_03303 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site LL3_03304 IPR019811 Homoserine dehydrogenase, conserved site LL3_03304 IPR001342 Homoserine dehydrogenase, catalytic LL3_03304 IPR016204 Homoserine dehydrogenase LL3_03304 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding LL3_03304 IPR002912 ACT domain LL3_03304 IPR036291 NAD(P)-binding domain superfamily LL3_03306 IPR011009 Protein kinase-like domain superfamily LL3_03306 IPR014254 Spore coat protein YutH LL3_03307 IPR026038 Putative phosphatidylglycerophosphatase LL3_03307 IPR007686 YutG/PgpA domain LL3_03307 IPR036681 PgpA-like superfamily LL3_03308 IPR006354 HAD-superfamily hydrolase, subfamily IIA, hypothetical 1 LL3_03308 IPR023214 HAD superfamily LL3_03308 IPR036412 HAD-like superfamily LL3_03308 IPR006357 HAD-superfamily hydrolase, subfamily IIA LL3_03309 IPR037038 Bsu32300-like superfamily LL3_03309 IPR008201 Protein of unknown function DUF86 LL3_03310 IPR009370 Protein of unknown function DUF1027 LL3_03310 IPR038141 YutD-like superfamily LL3_03311 IPR031691 Lipoyl synthase, N-terminal LL3_03311 IPR007197 Radical SAM LL3_03311 IPR003698 Lipoyl synthase LL3_03311 IPR013785 Aldolase-type TIM barrel LL3_03311 IPR006638 Elp3/MiaB/NifB LL3_03312 IPR011055 Duplicated hybrid motif LL3_03312 IPR016047 Peptidase M23 LL3_03313 IPR014197 Sporulation protein YunB LL3_03314 IPR011240 Phosphoesterase-related protein YunD LL3_03314 IPR008334 5'-Nucleotidase, C-terminal LL3_03314 IPR029052 Metallo-dependent phosphatase-like LL3_03314 IPR036907 5'-Nucleotidase, C-terminal domain superfamily LL3_03314 IPR006179 5'-Nucleotidase/apyrase LL3_03315 IPR002781 Transmembrane protein TauE-like LL3_03316 IPR002763 Protein of unknown function DUF72 LL3_03316 IPR036520 UPF0759 superfamily LL3_03318 IPR032466 Metal-dependent hydrolase LL3_03318 IPR011059 Metal-dependent hydrolase, composite domain superfamily LL3_03318 IPR006680 Amidohydrolase-related LL3_03318 IPR017593 Allantoinase LL3_03319 IPR012914 Purine catabolism PurC-like domain LL3_03319 IPR025736 PucR C-terminal helix-turn-helix domain LL3_03319 IPR041522 CdaR, GGDEF-like domain LL3_03319 IPR042070 PucR C-terminal helix-turn-helix domain superfamily LL3_03321 IPR036778 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase superfamily LL3_03321 IPR018020 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase LL3_03321 IPR019842 Uricase, conserved site LL3_03321 IPR002042 Uricase LL3_03321 IPR017580 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 1 LL3_03323 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG LL3_03323 IPR005829 Sugar transporter, conserved site LL3_03323 IPR004734 Multidrug resistance protein LL3_03323 IPR036259 MFS transporter superfamily LL3_03323 IPR020846 Major facilitator superfamily domain LL3_03323 IPR011701 Major facilitator superfamily LL3_03324 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_03324 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site LL3_03324 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_03324 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase LL3_03324 IPR000192 Aminotransferase class V domain LL3_03324 IPR015424 Pyridoxal phosphate-dependent transferase LL3_03325 IPR036264 Bacterial exopeptidase dimerisation domain LL3_03325 IPR010158 Amidase, carbamoylase-type LL3_03325 IPR002933 Peptidase M20 LL3_03326 IPR007346 Endonuclease I LL3_03327 IPR003439 ABC transporter-like LL3_03327 IPR003593 AAA+ ATPase domain LL3_03327 IPR017871 ABC transporter, conserved site LL3_03327 IPR005116 Transport-associated OB, type 1 LL3_03327 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03327 IPR040582 MalK, OB fold domain LL3_03327 IPR008995 Molybdate/tungstate binding, C-terminal LL3_03328 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily LL3_03328 IPR000524 Transcription regulator HTH, GntR LL3_03328 IPR011663 UbiC transcription regulator-associated LL3_03328 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_03328 IPR036390 Winged helix DNA-binding domain superfamily LL3_03329 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site LL3_03329 IPR011611 Carbohydrate kinase PfkB LL3_03329 IPR029056 Ribokinase-like LL3_03330 IPR035906 MetI-like superfamily LL3_03330 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LL3_03331 IPR035906 MetI-like superfamily LL3_03331 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LL3_03332 IPR006059 Bacterial extracellular solute-binding protein LL3_03333 IPR024713 Fructosamine deglycase FrlB LL3_03333 IPR035490 GlmS/FrlB, SIS domain 2 LL3_03333 IPR035488 Fructosamine deglycase FrlB, SIS domain 1 LL3_03333 IPR001347 Sugar isomerase (SIS) LL3_03334 IPR000551 MerR-type HTH domain LL3_03334 IPR009061 Putative DNA-binding domain superfamily LL3_03334 IPR011789 Cu(I)-responsive transcriptional regulator LL3_03335 IPR023888 Antimicrobial peptide, SdpC family LL3_03336 IPR023894 Sporulation delaying protein SdpB LL3_03336 IPR011020 HTTM LL3_03337 IPR023902 Sporulation delaying protein SdpA LL3_03338 IPR012867 Domain of unknown function DUF1648 LL3_03339 IPR014527 Excinuclease GIY-YIG catalytic domain-containing uncharacterised conserved protein LL3_03339 IPR035901 GIY-YIG endonuclease superfamily LL3_03339 IPR000305 GIY-YIG endonuclease LL3_03340 IPR036188 FAD/NAD(P)-binding domain superfamily LL3_03340 IPR006076 FAD dependent oxidoreductase LL3_03341 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_03341 IPR004033 UbiE/COQ5 methyltransferase LL3_03341 IPR023576 UbiE/COQ5 methyltransferase, conserved site LL3_03342 IPR020216 Uncharacterised protein family, YncE LL3_03344 IPR023346 Lysozyme-like domain superfamily LL3_03344 IPR023099 Glycoside hydrolase, family 46, N-terminal LL3_03344 IPR000400 Glycoside hydrolase, family 46 LL3_03346 IPR002477 Peptidoglycan binding-like LL3_03346 IPR036365 PGBD-like superfamily LL3_03346 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily LL3_03346 IPR036366 PGBD superfamily LL3_03346 IPR018392 LysM domain LL3_03346 IPR002502 N-acetylmuramoyl-L-alanine amidase domain LL3_03346 IPR036779 LysM domain superfamily LL3_03347 IPR006480 Bacteriophage holin family LL3_03351 IPR006626 Parallel beta-helix repeat LL3_03351 IPR011050 Pectin lyase fold/virulence factor LL3_03351 IPR021865 Peptidase G2, IMC autoproteolytic cleavage domain LL3_03351 IPR012334 Pectin lyase fold LL3_03351 IPR024535 Pectate lyase superfamily protein LL3_03352 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain LL3_03352 IPR038200 GW domain superfamily LL3_03352 IPR025987 GW domain LL3_03354 IPR023346 Lysozyme-like domain superfamily LL3_03354 IPR008258 Transglycosylase SLT domain 1 LL3_03374 IPR001525 C-5 cytosine methyltransferase LL3_03374 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_03374 IPR031303 DNA methylase, C-5 cytosine-specific, conserved site LL3_03374 IPR018117 DNA methylase, C-5 cytosine-specific, active site LL3_03375 IPR002421 5'-3' exonuclease, N-terminal LL3_03375 IPR002562 3'-5' exonuclease domain LL3_03375 IPR029060 PIN-like domain superfamily LL3_03375 IPR036397 Ribonuclease H superfamily LL3_03375 IPR036279 5'-3' exonuclease, C-terminal domain superfamily LL3_03375 IPR019760 DNA-directed DNA polymerase, family A, conserved site LL3_03375 IPR008918 Helix-hairpin-helix motif, class 2 LL3_03375 IPR001098 DNA-directed DNA polymerase, family A, palm domain LL3_03375 IPR020045 DNA polymerase I-like, H3TH domain LL3_03375 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal LL3_03375 IPR018320 DNA polymerase 1 LL3_03375 IPR012337 Ribonuclease H-like superfamily LL3_03375 IPR002298 DNA polymerase A LL3_03382 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LL3_03382 IPR001387 Cro/C1-type helix-turn-helix domain LL3_03384 IPR013762 Integrase-like, catalytic domain superfamily LL3_03384 IPR023009 Tyrosine recombinase XerC/XerD LL3_03384 IPR011932 Tyrosine recombinase XerD LL3_03384 IPR004107 Integrase, SAM-like, N-terminal LL3_03384 IPR010998 Integrase/recombinase, N-terminal LL3_03384 IPR002104 Integrase, catalytic domain LL3_03384 IPR011010 DNA breaking-rejoining enzyme, catalytic core LL3_03385 IPR010231 SUF system FeS cluster assembly, SufB LL3_03385 IPR037284 SUF system FeS cluster assembly, SufBD superfamily LL3_03385 IPR000825 SUF system FeS cluster assembly, SufBD LL3_03386 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal LL3_03387 IPR015424 Pyridoxal phosphate-dependent transferase LL3_03387 IPR000192 Aminotransferase class V domain LL3_03387 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site LL3_03387 IPR010970 Cysteine desulfurase, SufS LL3_03387 IPR016454 Cysteine desulfurase LL3_03387 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_03387 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_03388 IPR037284 SUF system FeS cluster assembly, SufBD superfamily LL3_03388 IPR011542 SUF system FeS cluster assembly, SufD LL3_03388 IPR000825 SUF system FeS cluster assembly, SufBD LL3_03389 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03389 IPR010230 FeS cluster assembly SUF system, ATPase SufC LL3_03389 IPR017871 ABC transporter, conserved site LL3_03389 IPR003439 ABC transporter-like LL3_03389 IPR003593 AAA+ ATPase domain LL3_03391 IPR029032 AhpD-like LL3_03391 IPR003779 Carboxymuconolactone decarboxylase-like LL3_03392 IPR004872 Lipoprotein NlpA family LL3_03393 IPR035906 MetI-like superfamily LL3_03393 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LL3_03394 IPR003593 AAA+ ATPase domain LL3_03394 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain LL3_03394 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03394 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal LL3_03394 IPR017871 ABC transporter, conserved site LL3_03394 IPR003439 ABC transporter-like LL3_03394 IPR018449 NIL domain LL3_03396 IPR036527 SCP2 sterol-binding domain superfamily LL3_03396 IPR003033 SCP2 sterol-binding domain LL3_03397 IPR013766 Thioredoxin domain LL3_03397 IPR036249 Thioredoxin-like superfamily LL3_03398 IPR006171 TOPRIM domain LL3_03398 IPR034141 Ribonuclease M5-like, TOPRIM domain LL3_03399 IPR020140 Uncharacterised protein family YusG LL3_03400 IPR002930 Glycine cleavage system H-protein LL3_03400 IPR000089 Biotin/lipoyl attachment LL3_03400 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site LL3_03400 IPR033753 Glycine cleavage system H-protein/Simiate LL3_03400 IPR017453 Glycine cleavage system H-protein, subgroup LL3_03400 IPR011053 Single hybrid motif LL3_03401 IPR036249 Thioredoxin-like superfamily LL3_03401 IPR006660 Arsenate reductase-like LL3_03401 IPR006504 Transcriptional regulator Spx/MgsR LL3_03402 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily LL3_03402 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily LL3_03402 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal LL3_03402 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal LL3_03402 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal LL3_03402 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain LL3_03402 IPR006089 Acyl-CoA dehydrogenase, conserved site LL3_03403 IPR002155 Thiolase LL3_03403 IPR016039 Thiolase-like LL3_03403 IPR020615 Thiolase, acyl-enzyme intermediate active site LL3_03403 IPR020613 Thiolase, conserved site LL3_03403 IPR020610 Thiolase, active site LL3_03403 IPR020617 Thiolase, C-terminal LL3_03403 IPR020616 Thiolase, N-terminal LL3_03404 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding LL3_03404 IPR001753 Enoyl-CoA hydratase/isomerase LL3_03404 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal LL3_03404 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily LL3_03404 IPR029045 ClpP/crotonase-like domain superfamily LL3_03404 IPR013328 6-phosphogluconate dehydrogenase, domain 2 LL3_03404 IPR036291 NAD(P)-binding domain superfamily LL3_03405 IPR025625 YuzL-like protein LL3_03406 IPR029041 FAD-linked oxidoreductase-like LL3_03406 IPR015659 Proline oxidase family LL3_03406 IPR002872 Proline dehydrogenase domain LL3_03406 IPR008219 Proline dehydrogenase, bacteria and archaea LL3_03408 IPR012851 Spore coat protein CotF-like LL3_03409 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_03409 IPR036390 Winged helix DNA-binding domain superfamily LL3_03409 IPR000835 MarR-type HTH domain LL3_03410 IPR004638 Drug resistance transporter EmrB-like LL3_03410 IPR005829 Sugar transporter, conserved site LL3_03410 IPR020846 Major facilitator superfamily domain LL3_03410 IPR011701 Major facilitator superfamily LL3_03410 IPR036259 MFS transporter superfamily LL3_03411 IPR004194 Restriction endonuclease, type II, BamHI LL3_03411 IPR011335 Restriction endonuclease type II-like LL3_03411 IPR011338 Restriction endonuclease, type II, BamHI/BglIII/BstY LL3_03412 IPR001387 Cro/C1-type helix-turn-helix domain LL3_03412 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LL3_03413 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class LL3_03413 IPR002052 DNA methylase, N-6 adenine-specific, conserved site LL3_03413 IPR002941 DNA methylase N-4/N-6 LL3_03413 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_03414 IPR020393 Uncharacterised protein family YusU LL3_03415 IPR003593 AAA+ ATPase domain LL3_03415 IPR003439 ABC transporter-like LL3_03415 IPR017871 ABC transporter, conserved site LL3_03415 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03416 IPR025623 YusW-like protein LL3_03418 IPR020904 Short-chain dehydrogenase/reductase, conserved site LL3_03418 IPR002347 Short-chain dehydrogenase/reductase SDR LL3_03418 IPR036291 NAD(P)-binding domain superfamily LL3_03419 IPR002177 DNA-binding protein Dps LL3_03419 IPR023188 DNA-binding protein Dps, conserved site LL3_03419 IPR012347 Ferritin-like LL3_03419 IPR008331 Ferritin/DPS protein domain LL3_03419 IPR009078 Ferritin-like superfamily LL3_03420 IPR009003 Peptidase S1, PA clan LL3_03420 IPR036034 PDZ superfamily LL3_03420 IPR001940 Peptidase S1C LL3_03420 IPR001478 PDZ domain LL3_03422 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_03422 IPR016032 Signal transduction response regulator, C-terminal effector LL3_03422 IPR001789 Signal transduction response regulator, receiver domain LL3_03422 IPR001867 OmpR/PhoB-type DNA-binding domain LL3_03422 IPR011006 CheY-like superfamily LL3_03422 IPR039420 Transcriptional regulatory protein WalR-like LL3_03423 IPR003660 HAMP domain LL3_03423 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LL3_03423 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LL3_03423 IPR005467 Histidine kinase domain LL3_03423 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_03423 IPR003594 Histidine kinase/HSP90-like ATPase LL3_03423 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LL3_03425 IPR023772 DNA-binding HTH domain, TetR-type, conserved site LL3_03425 IPR001647 DNA-binding HTH domain, TetR-type LL3_03425 IPR009057 Homeobox-like domain superfamily LL3_03426 IPR020557 Fumarate lyase, conserved site LL3_03426 IPR000362 Fumarate lyase family LL3_03426 IPR022761 Fumarate lyase, N-terminal LL3_03426 IPR018951 Fumarase C, C-terminal LL3_03426 IPR024083 Fumarase/histidase, N-terminal LL3_03426 IPR005677 Fumarate hydratase, class II LL3_03426 IPR008948 L-Aspartase-like LL3_03427 IPR025088 Protein of unknown function DUF3970 LL3_03428 IPR004995 Bacillus/Clostridium Ger spore germination protein LL3_03429 IPR004761 Spore germination GerAB LL3_03431 IPR011006 CheY-like superfamily LL3_03431 IPR016032 Signal transduction response regulator, C-terminal effector LL3_03431 IPR001789 Signal transduction response regulator, receiver domain LL3_03431 IPR000792 Transcription regulator LuxR, C-terminal LL3_03432 IPR003594 Histidine kinase/HSP90-like ATPase LL3_03432 IPR003660 HAMP domain LL3_03432 IPR005467 Histidine kinase domain LL3_03432 IPR017202 Sensor histidine kinase LiaS/VraS LL3_03432 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain LL3_03432 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_03433 IPR024425 Cell wall-active antibiotics response 4TMS YvqF LL3_03433 IPR016975 Cell wall-active antibiotic response protein LL3_03434 IPR025164 Putative adhesin LL3_03435 IPR007157 PspA/IM30 LL3_03437 IPR036259 MFS transporter superfamily LL3_03437 IPR011701 Major facilitator superfamily LL3_03438 IPR016030 Cobalamin adenosyltransferase-like LL3_03438 IPR036451 Cobalamin adenosyltransferase-like superfamily LL3_03438 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type LL3_03439 IPR003593 AAA+ ATPase domain LL3_03439 IPR003439 ABC transporter-like LL3_03439 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03440 IPR000522 ABC transporter, permease protein, BtuC-like LL3_03440 IPR037294 ABC transporter, BtuC-like LL3_03441 IPR002491 ABC transporter periplasmic binding domain LL3_03442 IPR002347 Short-chain dehydrogenase/reductase SDR LL3_03442 IPR020904 Short-chain dehydrogenase/reductase, conserved site LL3_03442 IPR036291 NAD(P)-binding domain superfamily LL3_03443 IPR005511 Senescence marker protein-30 (SMP-30) LL3_03443 IPR013658 SMP-30/Gluconolactonase/LRE-like region LL3_03443 IPR011042 Six-bladed beta-propeller, TolB-like LL3_03444 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LL3_03444 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_03444 IPR005467 Histidine kinase domain LL3_03444 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LL3_03444 IPR003594 Histidine kinase/HSP90-like ATPase LL3_03444 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LL3_03445 IPR039420 Transcriptional regulatory protein WalR-like LL3_03445 IPR001867 OmpR/PhoB-type DNA-binding domain LL3_03445 IPR011006 CheY-like superfamily LL3_03445 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_03445 IPR001789 Signal transduction response regulator, receiver domain LL3_03445 IPR016032 Signal transduction response regulator, C-terminal effector LL3_03448 IPR013324 RNA polymerase sigma factor, region 3/4-like LL3_03448 IPR007630 RNA polymerase sigma-70 region 4 LL3_03448 IPR014284 RNA polymerase sigma-70 like domain LL3_03449 IPR024419 Protein of unknown function YvrJ LL3_03450 IPR017774 Bicupin, oxalate decarboxylase/oxidase LL3_03450 IPR006045 Cupin 1 LL3_03450 IPR014710 RmlC-like jelly roll fold LL3_03450 IPR011051 RmlC-like cupin domain superfamily LL3_03451 IPR025912 Regulatory protein YrvL LL3_03452 IPR003439 ABC transporter-like LL3_03452 IPR003593 AAA+ ATPase domain LL3_03452 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03452 IPR017871 ABC transporter, conserved site LL3_03453 IPR037294 ABC transporter, BtuC-like LL3_03453 IPR000522 ABC transporter, permease protein, BtuC-like LL3_03454 IPR000522 ABC transporter, permease protein, BtuC-like LL3_03454 IPR037294 ABC transporter, BtuC-like LL3_03455 IPR002491 ABC transporter periplasmic binding domain LL3_03456 IPR011610 S-adenosyl-L-methionine-dependent methyltransferase, putative LL3_03456 IPR016874 Tetracenomycin polyketide synthesis O-methyltransferase TcmP LL3_03456 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_03456 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp LL3_03457 IPR002293 Amino acid/polyamine transporter I LL3_03458 IPR014220 Small acid-soluble spore protein, SspJ LL3_03459 IPR007404 LexA-binding, inner membrane-associated putative hydrolase LL3_03460 IPR000917 Sulfatase, N-terminal LL3_03460 IPR012160 Lipoteichoic acid synthase-like LL3_03460 IPR017850 Alkaline-phosphatase-like, core domain superfamily LL3_03461 IPR017850 Alkaline-phosphatase-like, core domain superfamily LL3_03461 IPR012160 Lipoteichoic acid synthase-like LL3_03461 IPR000917 Sulfatase, N-terminal LL3_03462 IPR041657 Helix-turn-helix domain, group 17 LL3_03462 IPR024370 PBP domain LL3_03462 IPR010093 SinI-like, DNA-binding domain LL3_03462 IPR009061 Putative DNA-binding domain superfamily LL3_03463 IPR005950 Molybdate ABC transporter, substrate-binding protein LL3_03463 IPR041879 YvgL-like, substrate binding domain LL3_03464 IPR011867 Molybdate ABC transporter, permease protein LL3_03464 IPR035906 MetI-like superfamily LL3_03464 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LL3_03465 IPR000792 Transcription regulator LuxR, C-terminal LL3_03465 IPR011006 CheY-like superfamily LL3_03465 IPR016032 Signal transduction response regulator, C-terminal effector LL3_03465 IPR001789 Signal transduction response regulator, receiver domain LL3_03467 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03467 IPR003439 ABC transporter-like LL3_03467 IPR017871 ABC transporter, conserved site LL3_03467 IPR003593 AAA+ ATPase domain LL3_03469 IPR000412 ABC-2 transporter LL3_03470 IPR036812 NADP-dependent oxidoreductase domain superfamily LL3_03470 IPR023210 NADP-dependent oxidoreductase domain LL3_03470 IPR020471 Aldo/keto reductase LL3_03470 IPR018170 Aldo/keto reductase, conserved site LL3_03472 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria LL3_03472 IPR006153 Cation/H+ exchanger LL3_03472 IPR002014 VHS domain LL3_03472 IPR018422 Cation/H+ exchanger, CPA1 family LL3_03473 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain LL3_03473 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily LL3_03473 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site LL3_03473 IPR000626 Ubiquitin domain LL3_03473 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit LL3_03473 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain LL3_03474 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase LL3_03474 IPR017938 Riboflavin synthase-like beta-barrel LL3_03474 IPR001433 Oxidoreductase FAD/NAD(P)-binding LL3_03474 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily LL3_03474 IPR029039 Flavoprotein-like superfamily LL3_03474 IPR008254 Flavodoxin/nitric oxide synthase LL3_03474 IPR001094 Flavodoxin-like LL3_03474 IPR017927 FAD-binding domain, ferredoxin reductase-type LL3_03474 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding LL3_03474 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain LL3_03474 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain LL3_03475 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03475 IPR000212 DNA helicase, UvrD/REP type LL3_03475 IPR014016 UvrD-like helicase, ATP-binding domain LL3_03475 IPR027785 UvrD-like helicase C-terminal domain LL3_03476 IPR005115 Uncharacterised domain UPF0126 LL3_03478 IPR023380 DsbB-like superfamily LL3_03478 IPR012187 Disulphide bond formation protein BdbC LL3_03478 IPR003752 Disulphide bond formation protein DsbB/BdbC LL3_03479 IPR013766 Thioredoxin domain LL3_03479 IPR036249 Thioredoxin-like superfamily LL3_03479 IPR012336 Thioredoxin-like fold LL3_03480 IPR023299 P-type ATPase, cytoplasmic domain N LL3_03480 IPR023214 HAD superfamily LL3_03480 IPR023298 P-type ATPase, transmembrane domain superfamily LL3_03480 IPR001757 P-type ATPase LL3_03480 IPR027256 P-type ATPase, subfamily IB LL3_03480 IPR008250 P-type ATPase, A domain superfamily LL3_03480 IPR036163 Heavy metal-associated domain superfamily LL3_03480 IPR018303 P-type ATPase, phosphorylation site LL3_03480 IPR036412 HAD-like superfamily LL3_03480 IPR017969 Heavy-metal-associated, conserved site LL3_03480 IPR006121 Heavy metal-associated domain, HMA LL3_03481 IPR017969 Heavy-metal-associated, conserved site LL3_03481 IPR001757 P-type ATPase LL3_03481 IPR006122 Heavy metal-associated domain, copper ion-binding LL3_03481 IPR006121 Heavy metal-associated domain, HMA LL3_03481 IPR036163 Heavy metal-associated domain superfamily LL3_03481 IPR027256 P-type ATPase, subfamily IB LL3_03481 IPR036412 HAD-like superfamily LL3_03481 IPR008250 P-type ATPase, A domain superfamily LL3_03481 IPR023214 HAD superfamily LL3_03481 IPR018303 P-type ATPase, phosphorylation site LL3_03481 IPR023299 P-type ATPase, cytoplasmic domain N LL3_03481 IPR023298 P-type ATPase, transmembrane domain superfamily LL3_03482 IPR006122 Heavy metal-associated domain, copper ion-binding LL3_03482 IPR017969 Heavy-metal-associated, conserved site LL3_03482 IPR000428 Copper ion binding protein LL3_03482 IPR006121 Heavy metal-associated domain, HMA LL3_03482 IPR036163 Heavy metal-associated domain superfamily LL3_03483 IPR003735 Metal-sensitive transcriptional repressor LL3_03483 IPR038390 Metal-sensitive transcriptional repressor superfamily LL3_03484 IPR036291 NAD(P)-binding domain superfamily LL3_03484 IPR000683 Oxidoreductase, N-terminal LL3_03484 IPR004104 Oxidoreductase, C-terminal LL3_03485 IPR029039 Flavoprotein-like superfamily LL3_03485 IPR023048 NADH-azoreductase, FMN-dependent LL3_03485 IPR003680 Flavodoxin-like fold LL3_03486 IPR036661 Luciferase-like domain superfamily LL3_03486 IPR011251 Luciferase-like domain LL3_03486 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A LL3_03487 IPR002109 Glutaredoxin LL3_03487 IPR036249 Thioredoxin-like superfamily LL3_03488 IPR011251 Luciferase-like domain LL3_03488 IPR019949 Luciferase family oxidoreductase, group 1 LL3_03488 IPR036661 Luciferase-like domain superfamily LL3_03489 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03489 IPR003593 AAA+ ATPase domain LL3_03489 IPR003439 ABC transporter-like LL3_03489 IPR017871 ABC transporter, conserved site LL3_03489 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type LL3_03490 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain LL3_03490 IPR035906 MetI-like superfamily LL3_03490 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LL3_03491 IPR035906 MetI-like superfamily LL3_03491 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LL3_03491 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain LL3_03493 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF LL3_03494 IPR016181 Acyl-CoA N-acyltransferase LL3_03494 IPR000182 GNAT domain LL3_03495 IPR005119 LysR, substrate-binding LL3_03495 IPR000847 Transcription regulator HTH, LysR LL3_03495 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_03495 IPR036390 Winged helix DNA-binding domain superfamily LL3_03496 IPR002347 Short-chain dehydrogenase/reductase SDR LL3_03496 IPR036291 NAD(P)-binding domain superfamily LL3_03497 IPR035905 Barstar-like superfamily LL3_03497 IPR000468 Barstar (barnase inhibitor) LL3_03498 IPR023620 Small protein B LL3_03498 IPR000037 SsrA-binding protein LL3_03498 IPR020081 SsrA-binding protein, conserved site LL3_03499 IPR011129 Cold shock domain LL3_03499 IPR040476 RNase II/RNase R, cold shock domain LL3_03499 IPR012340 Nucleic acid-binding, OB-fold LL3_03499 IPR003029 S1 domain LL3_03499 IPR013223 Ribonuclease B, N-terminal OB domain LL3_03499 IPR001900 Ribonuclease II/R LL3_03499 IPR022966 Ribonuclease II/R, conserved site LL3_03499 IPR004476 Ribonuclease II/ribonuclease R LL3_03499 IPR011805 Ribonuclease R LL3_03499 IPR022967 RNA-binding domain, S1 LL3_03500 IPR012354 Esterase/lipase LL3_03500 IPR029058 Alpha/Beta hydrolase fold LL3_03500 IPR022742 Serine aminopeptidase, S33 LL3_03501 IPR004692 Preprotein translocase SecG subunit LL3_03502 IPR001387 Cro/C1-type helix-turn-helix domain LL3_03502 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LL3_03503 IPR016759 HTH-type transcriptional repressor RghR LL3_03503 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LL3_03503 IPR001387 Cro/C1-type helix-turn-helix domain LL3_03504 IPR016759 HTH-type transcriptional repressor RghR LL3_03504 IPR001387 Cro/C1-type helix-turn-helix domain LL3_03504 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LL3_03505 IPR036390 Winged helix DNA-binding domain superfamily LL3_03505 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_03505 IPR002577 Helix-turn-helix, HxlR type LL3_03506 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_03506 IPR008358 Signal transduction histidine kinase/phosphatase, lantibiotic regulatory protein MprB LL3_03506 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LL3_03506 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LL3_03506 IPR003594 Histidine kinase/HSP90-like ATPase LL3_03506 IPR005467 Histidine kinase domain LL3_03507 IPR011006 CheY-like superfamily LL3_03507 IPR001867 OmpR/PhoB-type DNA-binding domain LL3_03507 IPR016032 Signal transduction response regulator, C-terminal effector LL3_03507 IPR001789 Signal transduction response regulator, receiver domain LL3_03507 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_03507 IPR039420 Transcriptional regulatory protein WalR-like LL3_03510 IPR003593 AAA+ ATPase domain LL3_03510 IPR022501 Gallidermin ABC transporter, ATP-binding subunit LL3_03510 IPR003439 ABC transporter-like LL3_03510 IPR017871 ABC transporter, conserved site LL3_03510 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03511 IPR035906 MetI-like superfamily LL3_03511 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LL3_03512 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain LL3_03513 IPR035906 MetI-like superfamily LL3_03513 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LL3_03514 IPR000644 CBS domain LL3_03514 IPR003593 AAA+ ATPase domain LL3_03514 IPR003439 ABC transporter-like LL3_03514 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03514 IPR005892 Glycine betaine transport ATP-binding subunit LL3_03514 IPR017871 ABC transporter, conserved site LL3_03515 IPR000835 MarR-type HTH domain LL3_03515 IPR036390 Winged helix DNA-binding domain superfamily LL3_03515 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_03515 IPR026282 DNA-binding protein, MJ1563 type LL3_03516 IPR035906 MetI-like superfamily LL3_03516 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LL3_03517 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain LL3_03518 IPR035906 MetI-like superfamily LL3_03518 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LL3_03519 IPR003593 AAA+ ATPase domain LL3_03519 IPR005892 Glycine betaine transport ATP-binding subunit LL3_03519 IPR000644 CBS domain LL3_03519 IPR017871 ABC transporter, conserved site LL3_03519 IPR003439 ABC transporter-like LL3_03519 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03520 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_03520 IPR026282 DNA-binding protein, MJ1563 type LL3_03520 IPR036390 Winged helix DNA-binding domain superfamily LL3_03520 IPR000835 MarR-type HTH domain LL3_03521 IPR002771 Multiple antibiotic resistance (MarC)-related LL3_03523 IPR026870 Zinc-ribbon domain LL3_03524 IPR000182 GNAT domain LL3_03524 IPR016181 Acyl-CoA N-acyltransferase LL3_03527 IPR024078 Putative deacetylase LmbE-like domain superfamily LL3_03527 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related LL3_03527 IPR023842 Bacillithiol biosynthesis deacetylase, BshB1 LL3_03530 IPR015424 Pyridoxal phosphate-dependent transferase LL3_03530 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_03530 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase LL3_03530 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_03531 IPR001509 NAD-dependent epimerase/dehydratase LL3_03531 IPR036291 NAD(P)-binding domain superfamily LL3_03532 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_03532 IPR015424 Pyridoxal phosphate-dependent transferase LL3_03532 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_03532 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase LL3_03533 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily LL3_03533 IPR036291 NAD(P)-binding domain superfamily LL3_03533 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal LL3_03533 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily LL3_03533 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation LL3_03533 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal LL3_03533 IPR017476 UDP-glucose/GDP-mannose dehydrogenase LL3_03533 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase LL3_03534 IPR007484 Peptidase M28 LL3_03534 IPR003137 PA domain LL3_03536 IPR020811 Enolase, N-terminal LL3_03536 IPR020809 Enolase, conserved site LL3_03536 IPR020810 Enolase, C-terminal TIM barrel domain LL3_03536 IPR029017 Enolase-like, N-terminal LL3_03536 IPR036849 Enolase-like, C-terminal domain superfamily LL3_03536 IPR000941 Enolase LL3_03537 IPR011258 BPG-independent PGAM, N-terminal LL3_03537 IPR006124 Metalloenzyme LL3_03537 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily LL3_03537 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent LL3_03537 IPR017850 Alkaline-phosphatase-like, core domain superfamily LL3_03538 IPR020861 Triosephosphate isomerase, active site LL3_03538 IPR000652 Triosephosphate isomerase LL3_03538 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic LL3_03538 IPR035990 Triosephosphate isomerase superfamily LL3_03538 IPR013785 Aldolase-type TIM barrel LL3_03539 IPR015824 Phosphoglycerate kinase, N-terminal LL3_03539 IPR001576 Phosphoglycerate kinase LL3_03539 IPR036043 Phosphoglycerate kinase superfamily LL3_03539 IPR015911 Phosphoglycerate kinase, conserved site LL3_03541 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family LL3_03541 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site LL3_03541 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain LL3_03541 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain LL3_03541 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I LL3_03541 IPR036291 NAD(P)-binding domain superfamily LL3_03542 IPR037171 NagB/RpiA transferase-like LL3_03542 IPR036390 Winged helix DNA-binding domain superfamily LL3_03542 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_03542 IPR007324 Sugar-binding domain, putative LL3_03543 IPR003663 Sugar/inositol transporter LL3_03543 IPR036259 MFS transporter superfamily LL3_03543 IPR020846 Major facilitator superfamily domain LL3_03543 IPR005829 Sugar transporter, conserved site LL3_03543 IPR005828 Major facilitator, sugar transporter-like LL3_03544 IPR005828 Major facilitator, sugar transporter-like LL3_03544 IPR036259 MFS transporter superfamily LL3_03544 IPR003663 Sugar/inositol transporter LL3_03544 IPR005829 Sugar transporter, conserved site LL3_03544 IPR020846 Major facilitator superfamily domain LL3_03545 IPR036390 Winged helix DNA-binding domain superfamily LL3_03545 IPR033532 Arabinose metabolism transcriptional repressor, ligand-binding domain LL3_03545 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_03545 IPR028082 Periplasmic binding protein-like I LL3_03545 IPR000524 Transcription regulator HTH, GntR LL3_03546 IPR011251 Luciferase-like domain LL3_03546 IPR036661 Luciferase-like domain superfamily LL3_03546 IPR019949 Luciferase family oxidoreductase, group 1 LL3_03547 IPR005119 LysR, substrate-binding LL3_03547 IPR036390 Winged helix DNA-binding domain superfamily LL3_03547 IPR000847 Transcription regulator HTH, LysR LL3_03547 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_03548 IPR000620 EamA domain LL3_03549 IPR004841 Amino acid permease/ SLC12A domain LL3_03553 IPR000281 Helix-turn-helix protein RpiR LL3_03553 IPR009057 Homeobox-like domain superfamily LL3_03553 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_03553 IPR001347 Sugar isomerase (SIS) LL3_03553 IPR035472 RpiR-like, SIS domain LL3_03554 IPR006002 Gluconate kinase LL3_03554 IPR018484 Carbohydrate kinase, FGGY, N-terminal LL3_03554 IPR018483 Carbohydrate kinase, FGGY, conserved site LL3_03554 IPR018485 Carbohydrate kinase, FGGY, C-terminal LL3_03554 IPR000577 Carbohydrate kinase, FGGY LL3_03555 IPR003474 Gluconate transporter LL3_03556 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily LL3_03556 IPR003741 LUD domain LL3_03556 IPR022823 Lactate utilization protein C LL3_03556 IPR037171 NagB/RpiA transferase-like LL3_03557 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain LL3_03557 IPR004452 4Fe-4S binding protein LL3_03557 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site LL3_03557 IPR022825 Lactate utilization protein B LL3_03557 IPR024569 4Fe-4S binding protein, C-terminal LL3_03557 IPR009051 Alpha-helical ferredoxin LL3_03557 IPR037171 NagB/RpiA transferase-like LL3_03557 IPR003741 LUD domain LL3_03557 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily LL3_03558 IPR022822 Lactate utilization protein A LL3_03558 IPR004017 Cysteine-rich domain LL3_03560 IPR008920 Transcription regulator FadR/GntR, C-terminal LL3_03560 IPR011711 GntR, C-terminal LL3_03560 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_03560 IPR036390 Winged helix DNA-binding domain superfamily LL3_03560 IPR000524 Transcription regulator HTH, GntR LL3_03561 IPR003804 L-lactate permease LL3_03562 IPR007046 RNA polymerase sigma factor 54, core-binding domain LL3_03562 IPR000394 RNA polymerase sigma factor 54 LL3_03562 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily LL3_03562 IPR007634 RNA polymerase sigma factor 54, DNA-binding LL3_03563 IPR018590 Uncharacterised domain YvfG LL3_03563 IPR037247 YvfG domain superfamily LL3_03564 IPR007345 Polysaccharide pyruvyl transferase LL3_03565 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_03565 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_03565 IPR015424 Pyridoxal phosphate-dependent transferase LL3_03565 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase LL3_03566 IPR018357 Hexapeptide transferase, conserved site LL3_03566 IPR041561 PglD, N-terminal LL3_03566 IPR020019 Sialic acid O-acyltransferase NeuD-like LL3_03566 IPR011004 Trimeric LpxA-like superfamily LL3_03566 IPR001451 Hexapeptide repeat LL3_03567 IPR003362 Bacterial sugar transferase LL3_03568 IPR002797 Polysaccharide biosynthesis protein LL3_03568 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain LL3_03569 IPR001173 Glycosyltransferase 2-like LL3_03569 IPR029044 Nucleotide-diphospho-sugar transferases LL3_03570 IPR007345 Polysaccharide pyruvyl transferase LL3_03571 IPR029044 Nucleotide-diphospho-sugar transferases LL3_03571 IPR001173 Glycosyltransferase 2-like LL3_03573 IPR001296 Glycosyl transferase, family 1 LL3_03573 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain LL3_03574 IPR029044 Nucleotide-diphospho-sugar transferases LL3_03574 IPR001173 Glycosyltransferase 2-like LL3_03575 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain LL3_03575 IPR001296 Glycosyl transferase, family 1 LL3_03576 IPR036291 NAD(P)-binding domain superfamily LL3_03576 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain LL3_03576 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_03577 IPR005702 Exopolysaccharide synthesis protein LL3_03577 IPR025669 AAA domain LL3_03577 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03578 IPR003856 Polysaccharide chain length determinant N-terminal domain LL3_03579 IPR001387 Cro/C1-type helix-turn-helix domain LL3_03579 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LL3_03579 IPR010981 SinR repressor/SinI anti-repressor, dimerisation domain LL3_03579 IPR036281 SinR repressor/SinI anti-repressor, dimerisation domain superfamily LL3_03580 IPR019819 Carboxylesterase type B, conserved site LL3_03580 IPR019826 Carboxylesterase type B, active site LL3_03580 IPR002018 Carboxylesterase, type B LL3_03580 IPR029058 Alpha/Beta hydrolase fold LL3_03580 IPR000997 Cholinesterase LL3_03582 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal LL3_03582 IPR024072 Dihydrofolate reductase-like domain superfamily LL3_03583 IPR002938 FAD-binding domain LL3_03583 IPR036188 FAD/NAD(P)-binding domain superfamily LL3_03585 IPR038750 Uncharacterized protein YczE/YyaS-like LL3_03586 IPR000182 GNAT domain LL3_03586 IPR016181 Acyl-CoA N-acyltransferase LL3_03587 IPR012674 Calycin LL3_03587 IPR008729 Phenolic acid decarboxylase LL3_03588 IPR020915 Uncharacterised protein family UPF0311 LL3_03594 IPR018053 Glycoside hydrolase, family 32, active site LL3_03594 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily LL3_03594 IPR001362 Glycoside hydrolase, family 32 LL3_03594 IPR006232 Sucrose-6-phosphate hydrolase LL3_03594 IPR013189 Glycosyl hydrolase family 32, C-terminal LL3_03594 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily LL3_03594 IPR013148 Glycosyl hydrolase family 32, N-terminal LL3_03595 IPR020846 Major facilitator superfamily domain LL3_03595 IPR000576 LacY/RafB permease family LL3_03595 IPR018457 LacY/RafB permease family, conserved site LL3_03595 IPR036259 MFS transporter superfamily LL3_03597 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LL3_03597 IPR000843 LacI-type HTH domain LL3_03597 IPR028082 Periplasmic binding protein-like I LL3_03598 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA LL3_03598 IPR029045 ClpP/crotonase-like domain superfamily LL3_03598 IPR033135 ClpP, histidine active site LL3_03598 IPR001907 ATP-dependent Clp protease proteolytic subunit LL3_03598 IPR018215 ClpP, Ser active site LL3_03599 IPR036390 Winged helix DNA-binding domain superfamily LL3_03599 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_03599 IPR005119 LysR, substrate-binding LL3_03599 IPR000847 Transcription regulator HTH, LysR LL3_03600 IPR007400 PrpF protein LL3_03601 IPR005828 Major facilitator, sugar transporter-like LL3_03601 IPR036259 MFS transporter superfamily LL3_03601 IPR020846 Major facilitator superfamily domain LL3_03603 IPR031100 LOG family LL3_03603 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG LL3_03604 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core LL3_03604 IPR011411 NTP Pyrophosphohydrolase MazG-related LL3_03605 IPR011547 SLC26A/SulP transporter domain LL3_03605 IPR001902 SLC26A/SulP transporter LL3_03605 IPR036513 STAS domain superfamily LL3_03605 IPR002645 STAS domain LL3_03606 IPR001765 Carbonic anhydrase LL3_03606 IPR036874 Carbonic anhydrase superfamily LL3_03608 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LL3_03608 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site LL3_03608 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 LL3_03608 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain LL3_03608 IPR036291 NAD(P)-binding domain superfamily LL3_03609 IPR001887 Barnase LL3_03609 IPR000026 Guanine-specific ribonuclease N1/T1/U2 LL3_03609 IPR016191 Ribonuclease/ribotoxin LL3_03610 IPR001447 Arylamine N-acetyltransferase LL3_03610 IPR038765 Papain-like cysteine peptidase superfamily LL3_03611 IPR002114 Phosphotransferase system, HPr serine phosphorylation site LL3_03611 IPR035895 HPr-like superfamily LL3_03611 IPR000032 Phosphocarrier protein HPr-like LL3_03612 IPR039518 WhiA, LAGLIDADG-like domain LL3_03612 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_03612 IPR023054 Sporulation regulator WhiA, C-terminal LL3_03612 IPR003802 Sporulation regulator WhiA LL3_03612 IPR018478 Sporulation transcription regulator WhiA, N-terminal domain LL3_03612 IPR027434 Homing endonuclease LL3_03613 IPR010119 Gluconeogenesis factor LL3_03613 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 LL3_03613 IPR038136 Gluconeogenesis factor superfamily LL3_03614 IPR005337 RapZ-like family LL3_03614 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03615 IPR020476 NUDIX hydrolase LL3_03615 IPR015797 NUDIX hydrolase-like domain superfamily LL3_03615 IPR000086 NUDIX hydrolase domain LL3_03617 IPR036188 FAD/NAD(P)-binding domain superfamily LL3_03617 IPR005982 Thioredoxin reductase LL3_03617 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site LL3_03617 IPR023753 FAD/NAD(P)-binding domain LL3_03618 IPR038765 Papain-like cysteine peptidase superfamily LL3_03618 IPR000064 Endopeptidase, NLPC/P60 domain LL3_03621 IPR011990 Tetratricopeptide-like helical domain superfamily LL3_03621 IPR019734 Tetratricopeptide repeat LL3_03621 IPR013026 Tetratricopeptide repeat-containing domain LL3_03622 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LL3_03622 IPR003660 HAMP domain LL3_03622 IPR003594 Histidine kinase/HSP90-like ATPase LL3_03622 IPR013767 PAS fold LL3_03622 IPR005467 Histidine kinase domain LL3_03622 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LL3_03622 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_03622 IPR000014 PAS domain LL3_03622 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LL3_03622 IPR035965 PAS domain superfamily LL3_03622 IPR041328 ResE, histidine kinase sensor domain LL3_03623 IPR011006 CheY-like superfamily LL3_03623 IPR001867 OmpR/PhoB-type DNA-binding domain LL3_03623 IPR016032 Signal transduction response regulator, C-terminal effector LL3_03623 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_03623 IPR039420 Transcriptional regulatory protein WalR-like LL3_03623 IPR001789 Signal transduction response regulator, receiver domain LL3_03624 IPR011527 ABC transporter type 1, transmembrane domain LL3_03624 IPR003593 AAA+ ATPase domain LL3_03624 IPR039421 Type I protein exporter LL3_03624 IPR017871 ABC transporter, conserved site LL3_03624 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03624 IPR036640 ABC transporter type 1, transmembrane domain superfamily LL3_03624 IPR003439 ABC transporter-like LL3_03625 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like LL3_03625 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain LL3_03625 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily LL3_03625 IPR023019 Histidine biosynthesis bifunctional protein HisIE LL3_03625 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase LL3_03625 IPR026660 Phosphoribosyl-AMP cyclohydrolase LL3_03626 IPR013785 Aldolase-type TIM barrel LL3_03626 IPR011060 Ribulose-phosphate binding barrel LL3_03626 IPR004651 Histidine biosynthesis, HisF LL3_03626 IPR006062 Histidine biosynthesis LL3_03627 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA LL3_03627 IPR006062 Histidine biosynthesis LL3_03627 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase LL3_03627 IPR011060 Ribulose-phosphate binding barrel LL3_03627 IPR013785 Aldolase-type TIM barrel LL3_03628 IPR010139 Imidazole glycerol phosphate synthase, subunit H LL3_03628 IPR029062 Class I glutamine amidotransferase-like LL3_03628 IPR017926 Glutamine amidotransferase LL3_03629 IPR020568 Ribosomal protein S5 domain 2-type fold LL3_03629 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site LL3_03629 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily LL3_03629 IPR000807 Imidazoleglycerol-phosphate dehydratase LL3_03630 IPR012131 Histidinol dehydrogenase LL3_03630 IPR022695 Histidinol dehydrogenase, monofunctional LL3_03630 IPR001692 Histidinol dehydrogenase, conserved site LL3_03630 IPR016161 Aldehyde/histidinol dehydrogenase LL3_03631 IPR024893 ATP phosphoribosyltransferase HisG, short form LL3_03631 IPR001348 ATP phosphoribosyltransferase HisG LL3_03631 IPR018198 ATP phosphoribosyltransferase, conserved site LL3_03631 IPR013820 ATP phosphoribosyltransferase, catalytic domain LL3_03632 IPR006195 Aminoacyl-tRNA synthetase, class II LL3_03632 IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain LL3_03632 IPR004517 ATP phosphoribosyltransferase regulatory subunit LL3_03632 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit LL3_03633 IPR016997 Uncharacterised conserved protein UCP032442 LL3_03633 IPR039563 Peptidase C39 single domain protein LL3_03633 IPR039564 Peptidase C39-like LL3_03634 IPR001451 Hexapeptide repeat LL3_03634 IPR011004 Trimeric LpxA-like superfamily LL3_03635 IPR036412 HAD-like superfamily LL3_03635 IPR006439 HAD hydrolase, subfamily IA LL3_03635 IPR041492 Haloacid dehalogenase-like hydrolase LL3_03635 IPR023214 HAD superfamily LL3_03635 IPR023198 Phosphoglycolate phosphatase-like, domain 2 LL3_03635 IPR023733 Pyrophosphatase PpaX LL3_03636 IPR001640 Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase Lgt LL3_03637 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily LL3_03637 IPR011104 HPr kinase/phosphorylase, C-terminal LL3_03637 IPR003755 HPr(Ser) kinase/phosphorylase LL3_03637 IPR011126 HPr(Ser) kinase/phosphorylase, N-terminal LL3_03638 IPR011059 Metal-dependent hydrolase, composite domain superfamily LL3_03638 IPR032466 Metal-dependent hydrolase LL3_03638 IPR006680 Amidohydrolase-related LL3_03638 IPR003764 N-acetylglucosamine-6-phosphate deacetylase LL3_03639 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase LL3_03639 IPR004547 Glucosamine-6-phosphate isomerase LL3_03639 IPR037171 NagB/RpiA transferase-like LL3_03641 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily LL3_03641 IPR001647 DNA-binding HTH domain, TetR-type LL3_03641 IPR009057 Homeobox-like domain superfamily LL3_03642 IPR036415 Lamin tail domain superfamily LL3_03642 IPR029052 Metallo-dependent phosphatase-like LL3_03642 IPR001322 Lamin tail domain LL3_03642 IPR011401 Phosphoesterase, YvnB LL3_03642 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type LL3_03643 IPR007165 Mycobacterial 4 TMS phage holin, superfamily IV LL3_03644 IPR007168 Phage shock protein, PspC, N-terminal LL3_03645 IPR016599 Uncharacterised conserved protein UCP012569 LL3_03645 IPR025164 Putative adhesin LL3_03648 IPR041102 UvrA, interaction domain LL3_03648 IPR041552 UvrA DNA-binding domain LL3_03648 IPR004602 UvrABC system subunit A LL3_03648 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03648 IPR017871 ABC transporter, conserved site LL3_03648 IPR003439 ABC transporter-like LL3_03648 IPR003593 AAA+ ATPase domain LL3_03649 IPR041471 UvrB, interaction domain LL3_03649 IPR024759 UvrB, YAD/RRR-motif-containing domain LL3_03649 IPR004807 UvrABC system, subunit B LL3_03649 IPR036876 UVR domain superfamily LL3_03649 IPR001943 UVR domain LL3_03649 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03649 IPR001650 Helicase, C-terminal LL3_03649 IPR014001 Helicase superfamily 1/2, ATP-binding domain LL3_03649 IPR006935 Helicase/UvrB, N-terminal LL3_03650 IPR019242 Protein of unknown function DUF2198 LL3_03651 IPR008279 PEP-utilising enzyme, mobile domain LL3_03651 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding LL3_03651 IPR013815 ATP-grasp fold, subdomain 1 LL3_03651 IPR036637 Phosphohistidine domain superfamily LL3_03652 IPR009057 Homeobox-like domain superfamily LL3_03652 IPR001647 DNA-binding HTH domain, TetR-type LL3_03653 IPR020846 Major facilitator superfamily domain LL3_03653 IPR036259 MFS transporter superfamily LL3_03653 IPR011701 Major facilitator superfamily LL3_03654 IPR034650 YuaB-like LL3_03654 IPR038480 YuaB-like superfamily LL3_03656 IPR036034 PDZ superfamily LL3_03656 IPR041489 PDZ domain 6 LL3_03656 IPR001478 PDZ domain LL3_03657 IPR035388 Swarming motility protein SwrA LL3_03658 IPR036034 PDZ superfamily LL3_03658 IPR041489 PDZ domain 6 LL3_03658 IPR001478 PDZ domain LL3_03658 IPR029045 ClpP/crotonase-like domain superfamily LL3_03658 IPR004447 C-terminal-processing peptidase S41A LL3_03658 IPR005151 Tail specific protease LL3_03658 IPR002477 Peptidoglycan binding-like LL3_03658 IPR036365 PGBD-like superfamily LL3_03658 IPR036366 PGBD superfamily LL3_03659 IPR011050 Pectin lyase fold/virulence factor LL3_03659 IPR039448 Right handed beta helix domain LL3_03659 IPR006626 Parallel beta-helix repeat LL3_03659 IPR012334 Pectin lyase fold LL3_03659 IPR006633 Carbohydrate-binding/sugar hydrolysis domain LL3_03660 IPR003838 ABC transporter permease protein domain LL3_03660 IPR040690 FtsX, extracellular domain LL3_03660 IPR004513 Cell division protein FtsX LL3_03661 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03661 IPR003439 ABC transporter-like LL3_03661 IPR005286 Cell division protein FtsE, ATP-binding LL3_03661 IPR003593 AAA+ ATPase domain LL3_03661 IPR017871 ABC transporter, conserved site LL3_03662 IPR009056 Cytochrome c-like domain LL3_03662 IPR036909 Cytochrome c-like domain superfamily LL3_03662 IPR012218 Cytochrome c, Bacillus subtilis c550-related LL3_03663 IPR003740 Uncharacterised membrane protein YitT LL3_03663 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal LL3_03663 IPR019264 Domain of unknown function DUF2179 LL3_03664 IPR005139 Peptide chain release factor LL3_03664 IPR000352 Peptide chain release factor class I LL3_03664 IPR004374 Peptide chain release factor 2 LL3_03665 IPR036670 SecA, preprotein cross-linking domain superfamily LL3_03665 IPR004027 SEC-C motif LL3_03665 IPR000185 Protein translocase subunit SecA LL3_03665 IPR036266 SecA, Wing/Scaffold superfamily LL3_03665 IPR020937 SecA conserved site LL3_03665 IPR011115 SecA DEAD-like, N-terminal LL3_03665 IPR014018 SecA motor DEAD LL3_03665 IPR011130 SecA, preprotein cross-linking domain LL3_03665 IPR011116 SecA Wing/Scaffold LL3_03665 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03666 IPR034694 Ribosome hibernation promoting factor, long/plastid LL3_03666 IPR036567 Ribosome hibernation promotion factor-like LL3_03666 IPR003489 Ribosome hibernation promoting factor/RaiA LL3_03666 IPR032528 Sigma 54 modulation/S30EA ribosomal protein, C-terminal LL3_03666 IPR038416 Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain superfamily LL3_03669 IPR036584 Flagellar protein FliS superfamily LL3_03669 IPR003713 Flagellar protein FliS LL3_03670 IPR010810 Flagellin hook, IN motif LL3_03670 IPR040026 Flagellar hook-associated protein 2 LL3_03670 IPR010809 Flagellar hook-associated protein 2, C-terminal LL3_03670 IPR003481 Flagellar hook-associated protein 2, N-terminal LL3_03671 IPR001492 Flagellin LL3_03671 IPR001029 Flagellin, D0/D1 domain LL3_03671 IPR042187 Flagellin, C-terminal domain, subdomain 2 LL3_03672 IPR003751 Translational regulator CsrA LL3_03672 IPR036107 Carbon storage regulator superfamily LL3_03673 IPR003775 Flagellar assembly factor FliW LL3_03673 IPR024046 Flagellar assembly factor FliW domain superfamily LL3_03675 IPR013384 Flagellar hook-associated protein 3 LL3_03675 IPR001029 Flagellin, D0/D1 domain LL3_03676 IPR010930 Flagellar basal-body/hook protein, C-terminal domain LL3_03676 IPR019776 Flagellar basal body rod protein, conserved site LL3_03676 IPR002371 Flagellar hook-associated protein 1 LL3_03676 IPR001444 Flagellar basal body rod protein, N-terminal LL3_03677 IPR007809 FlgN-like protein LL3_03677 IPR036679 FlgN-like superfamily LL3_03678 IPR031316 Anti-sigma-28 factor FlgM, C-terminal LL3_03678 IPR007412 Anti-sigma-28 factor, FlgM LL3_03678 IPR035890 Anti-sigma-28 factor FlgM superfamily LL3_03679 IPR022258 Flagellar operon protein YvyF LL3_03680 IPR029057 Phosphoribosyltransferase-like LL3_03680 IPR000836 Phosphoribosyltransferase domain LL3_03680 IPR005222 Competence protein ComF LL3_03681 IPR019657 Late competence development protein ComFB LL3_03682 IPR001650 Helicase, C-terminal LL3_03682 IPR006935 Helicase/UvrB, N-terminal LL3_03682 IPR014001 Helicase superfamily 1/2, ATP-binding domain LL3_03682 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03683 IPR003797 DegV LL3_03684 IPR000792 Transcription regulator LuxR, C-terminal LL3_03684 IPR016032 Signal transduction response regulator, C-terminal effector LL3_03684 IPR001789 Signal transduction response regulator, receiver domain LL3_03684 IPR011006 CheY-like superfamily LL3_03685 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain LL3_03685 IPR016381 Signal transduction histidine kinase, DegS LL3_03685 IPR005467 Histidine kinase domain LL3_03685 IPR003594 Histidine kinase/HSP90-like ATPase LL3_03685 IPR008595 Sensor DegS LL3_03685 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_03686 IPR035647 EF-G domain III/V-like LL3_03686 IPR023582 Impact family LL3_03686 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site LL3_03686 IPR001498 Impact, N-terminal LL3_03686 IPR015796 Impact family, bacterial/archaeal LL3_03686 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal LL3_03686 IPR036956 Impact, N-terminal domain superfamily LL3_03686 IPR020568 Ribosomal protein S5 domain 2-type fold LL3_03687 IPR004474 Cell envelope-related transcriptional attenuator domain LL3_03688 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site LL3_03688 IPR000715 Glycosyl transferase, family 4 LL3_03690 IPR029044 Nucleotide-diphospho-sugar transferases LL3_03690 IPR001173 Glycosyltransferase 2-like LL3_03691 IPR003856 Polysaccharide chain length determinant N-terminal domain LL3_03692 IPR007016 O-antigen ligase-related LL3_03693 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily LL3_03693 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation LL3_03693 IPR036291 NAD(P)-binding domain superfamily LL3_03693 IPR017476 UDP-glucose/GDP-mannose dehydrogenase LL3_03693 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type LL3_03693 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal LL3_03693 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal LL3_03693 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily LL3_03694 IPR001296 Glycosyl transferase, family 1 LL3_03694 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain LL3_03695 IPR002797 Polysaccharide biosynthesis protein LL3_03695 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain LL3_03696 IPR003362 Bacterial sugar transferase LL3_03697 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain LL3_03697 IPR007253 Putative cell wall binding repeat 2 LL3_03698 IPR013693 Sporulation stage II protein D, amidase enhancer LytB N-terminal LL3_03698 IPR013486 Sporulation stage II protein D, amidase enhancer LytB LL3_03698 IPR007253 Putative cell wall binding repeat 2 LL3_03700 IPR004474 Cell envelope-related transcriptional attenuator domain LL3_03700 IPR023734 Polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagU LL3_03701 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain LL3_03701 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like LL3_03703 IPR029044 Nucleotide-diphospho-sugar transferases LL3_03703 IPR005835 Nucleotidyl transferase domain LL3_03703 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type LL3_03704 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03704 IPR015860 ABC transporter, teichoic acids export, TagH LL3_03704 IPR017871 ABC transporter, conserved site LL3_03704 IPR003439 ABC transporter-like LL3_03704 IPR003593 AAA+ ATPase domain LL3_03705 IPR000412 ABC-2 transporter LL3_03705 IPR013525 ABC-2 type transporter LL3_03706 IPR007554 CDP-glycerol glycerophosphotransferase LL3_03707 IPR001296 Glycosyl transferase, family 1 LL3_03707 IPR015397 Glycosyl transferase 1, domain A LL3_03708 IPR004821 Cytidyltransferase-like domain LL3_03708 IPR006409 Glycerol-3-phosphate cytidylyltransferase LL3_03708 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LL3_03709 IPR004629 Glycosyl transferase WecB/TagA/CpsF LL3_03709 IPR034714 N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase LL3_03710 IPR007554 CDP-glycerol glycerophosphotransferase LL3_03711 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain LL3_03711 IPR007730 Sporulation-like domain LL3_03711 IPR003646 SH3-like domain, bacterial-type LL3_03712 IPR011051 RmlC-like cupin domain superfamily LL3_03712 IPR014710 RmlC-like jelly roll fold LL3_03712 IPR014628 Mannose-6-phosphate isomerase, Firmicutes type, short form LL3_03712 IPR001250 Mannose-6-phosphate isomerase, type I LL3_03715 IPR004761 Spore germination GerAB LL3_03716 IPR008844 Spore germination GerAC LL3_03716 IPR038501 Spore germination GerAC superfamily LL3_03717 IPR029044 Nucleotide-diphospho-sugar transferases LL3_03717 IPR001173 Glycosyltransferase 2-like LL3_03718 IPR005829 Sugar transporter, conserved site LL3_03718 IPR036259 MFS transporter superfamily LL3_03718 IPR005828 Major facilitator, sugar transporter-like LL3_03718 IPR020846 Major facilitator superfamily domain LL3_03718 IPR003663 Sugar/inositol transporter LL3_03719 IPR004474 Cell envelope-related transcriptional attenuator domain LL3_03721 IPR023214 HAD superfamily LL3_03721 IPR006379 HAD-superfamily hydrolase, subfamily IIB LL3_03721 IPR000150 Cof family LL3_03721 IPR036412 HAD-like superfamily LL3_03722 IPR006876 LMBR1-like membrane protein LL3_03723 IPR038765 Papain-like cysteine peptidase superfamily LL3_03723 IPR000064 Endopeptidase, NLPC/P60 domain LL3_03725 IPR029052 Metallo-dependent phosphatase-like LL3_03725 IPR019079 Capsule synthesis protein, CapA LL3_03726 IPR008338 Capsule biosynthesis protein CapC LL3_03727 IPR013221 Mur ligase, central LL3_03727 IPR008337 Capsule biosynthesis protein CapB LL3_03727 IPR036565 Mur-like, catalytic domain superfamily LL3_03729 IPR004995 Bacillus/Clostridium Ger spore germination protein LL3_03730 IPR004761 Spore germination GerAB LL3_03733 IPR000843 LacI-type HTH domain LL3_03733 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LL3_03733 IPR028082 Periplasmic binding protein-like I LL3_03734 IPR002139 Ribokinase/fructokinase LL3_03734 IPR011611 Carbohydrate kinase PfkB LL3_03734 IPR011877 Ribokinase LL3_03734 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site LL3_03734 IPR029056 Ribokinase-like LL3_03735 IPR023064 D-ribose pyranase LL3_03735 IPR023750 RbsD-like superfamily LL3_03735 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU LL3_03736 IPR003593 AAA+ ATPase domain LL3_03736 IPR003439 ABC transporter-like LL3_03736 IPR015861 ABC transporter, ribose import, RbsA LL3_03736 IPR017871 ABC transporter, conserved site LL3_03736 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03737 IPR001851 ABC transporter, permease LL3_03738 IPR025997 Periplasmic binding protein LL3_03738 IPR028082 Periplasmic binding protein-like I LL3_03739 IPR003646 SH3-like domain, bacterial-type LL3_03739 IPR036028 SH3-like domain superfamily LL3_03740 IPR029039 Flavoprotein-like superfamily LL3_03740 IPR003680 Flavodoxin-like fold LL3_03741 IPR005128 Alpha-acetolactate decarboxylase LL3_03742 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding LL3_03742 IPR012782 Acetolactate synthase, catabolic LL3_03742 IPR029035 DHS-like NAD/FAD-binding domain superfamily LL3_03742 IPR029061 Thiamin diphosphate-binding fold LL3_03742 IPR012000 Thiamine pyrophosphate enzyme, central domain LL3_03742 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain LL3_03742 IPR000399 TPP-binding enzyme, conserved site LL3_03743 IPR005119 LysR, substrate-binding LL3_03743 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_03743 IPR036390 Winged helix DNA-binding domain superfamily LL3_03743 IPR037411 HTH-type transcriptional regulator AlsR, PBP2 domain LL3_03743 IPR000847 Transcription regulator HTH, LysR LL3_03744 IPR000802 Arsenical pump membrane protein, ArsB LL3_03747 IPR014867 Spore coat protein CotH LL3_03751 IPR012349 FMN-binding split barrel LL3_03751 IPR002563 Flavin reductase like domain LL3_03753 IPR000101 Gamma-glutamyltranspeptidase LL3_03753 IPR029055 Nucleophile aminohydrolases, N-terminal LL3_03755 IPR000485 AsnC-type HTH domain LL3_03755 IPR011008 Dimeric alpha-beta barrel LL3_03755 IPR036390 Winged helix DNA-binding domain superfamily LL3_03755 IPR019888 Transcription regulator AsnC-type LL3_03755 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain LL3_03755 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_03755 IPR011991 ArsR-like helix-turn-helix domain LL3_03756 IPR003370 Chromate transporter LL3_03757 IPR003370 Chromate transporter LL3_03760 IPR018958 Knr4/Smi1-like domain LL3_03760 IPR037883 Knr4/Smi1-like domain superfamily LL3_03761 IPR006829 LXG domain LL3_03761 IPR025968 YwqJ-like deaminase LL3_03761 IPR027797 Pre-toxin TG domain LL3_03764 IPR006829 LXG domain LL3_03764 IPR027797 Pre-toxin TG domain LL3_03764 IPR025968 YwqJ-like deaminase LL3_03766 IPR031681 Domain of unknown function DUF5082 LL3_03768 IPR015315 Protein of unknown function DUF1963 LL3_03768 IPR035948 YwqG-like superfamily LL3_03769 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal LL3_03769 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type LL3_03769 IPR036291 NAD(P)-binding domain superfamily LL3_03769 IPR017476 UDP-glucose/GDP-mannose dehydrogenase LL3_03769 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily LL3_03769 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation LL3_03769 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal LL3_03769 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily LL3_03771 IPR016667 Capsular polysaccharide synthesis, CpsB/CapC LL3_03771 IPR016195 Polymerase/histidinol phosphatase-like LL3_03772 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03772 IPR025669 AAA domain LL3_03772 IPR005702 Exopolysaccharide synthesis protein LL3_03773 IPR003856 Polysaccharide chain length determinant N-terminal domain LL3_03773 IPR032807 Tyrosine kinase, G-rich domain LL3_03775 IPR007527 Zinc finger, SWIM-type LL3_03776 IPR038718 SNF2-like, N-terminal domain superfamily LL3_03776 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03776 IPR022138 Helicase SWF/SNF-related LL3_03776 IPR001650 Helicase, C-terminal LL3_03776 IPR014001 Helicase superfamily 1/2, ATP-binding domain LL3_03776 IPR000330 SNF2-related, N-terminal domain LL3_03777 IPR023214 HAD superfamily LL3_03777 IPR036412 HAD-like superfamily LL3_03777 IPR006379 HAD-superfamily hydrolase, subfamily IIB LL3_03777 IPR000150 Cof family LL3_03778 IPR037171 NagB/RpiA transferase-like LL3_03778 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_03778 IPR014036 DeoR C-terminal sensor domain LL3_03778 IPR018356 Transcription regulator, HTH DeoR-type, conserved site LL3_03778 IPR001034 DeoR-type HTH domain LL3_03778 IPR036390 Winged helix DNA-binding domain superfamily LL3_03779 IPR012340 Nucleic acid-binding, OB-fold LL3_03779 IPR000424 Primosome PriB/single-strand DNA-binding LL3_03779 IPR011344 Single-stranded DNA-binding protein LL3_03781 IPR025573 YwpF-like protein LL3_03782 IPR036019 Gated mechanosensitive channel LL3_03782 IPR001185 Large-conductance mechanosensitive channel LL3_03782 IPR019823 Large-conductance mechanosensitive channel, conserved site LL3_03782 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L LL3_03783 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ LL3_03783 IPR029069 HotDog domain superfamily LL3_03783 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ LL3_03784 IPR019734 Tetratricopeptide repeat LL3_03784 IPR040702 Response regulator aspartate phosphatase, N-terminal LL3_03784 IPR011990 Tetratricopeptide-like helical domain superfamily LL3_03784 IPR013026 Tetratricopeptide repeat-containing domain LL3_03785 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like LL3_03785 IPR019776 Flagellar basal body rod protein, conserved site LL3_03785 IPR001444 Flagellar basal body rod protein, N-terminal LL3_03785 IPR010930 Flagellar basal-body/hook protein, C-terminal domain LL3_03785 IPR020013 Flagellar hook-basal body protein, FlgE/F/G LL3_03786 IPR001444 Flagellar basal body rod protein, N-terminal LL3_03786 IPR019776 Flagellar basal body rod protein, conserved site LL3_03786 IPR010930 Flagellar basal-body/hook protein, C-terminal domain LL3_03786 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like LL3_03788 IPR004753 Cell shape determining protein MreB LL3_03789 IPR018356 Transcription regulator, HTH DeoR-type, conserved site LL3_03789 IPR014208 Sporulation stage III, transcriptional regulator SpoIIID LL3_03790 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_03790 IPR036390 Winged helix DNA-binding domain superfamily LL3_03790 IPR000835 MarR-type HTH domain LL3_03791 IPR020846 Major facilitator superfamily domain LL3_03791 IPR036259 MFS transporter superfamily LL3_03791 IPR011701 Major facilitator superfamily LL3_03792 IPR012681 Nucleobase cation symporter-1, NCS1 LL3_03792 IPR038271 Purine-cytosine permease superfamily LL3_03792 IPR001248 Purine-cytosine permease LL3_03793 IPR036259 MFS transporter superfamily LL3_03793 IPR020846 Major facilitator superfamily domain LL3_03793 IPR011701 Major facilitator superfamily LL3_03794 IPR036380 Isochorismatase-like superfamily LL3_03794 IPR000868 Isochorismatase-like LL3_03794 IPR016291 Isochorismatase LL3_03795 IPR001905 Ammonium transporter LL3_03795 IPR018047 Ammonium transporter, conserved site LL3_03795 IPR024041 Ammonium transporter AmtB-like domain LL3_03795 IPR029020 Ammonium/urea transporter LL3_03796 IPR017918 Nitrogen regulatory protein PII, conserved site LL3_03796 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal LL3_03796 IPR011322 Nitrogen regulatory PII-like, alpha/beta LL3_03796 IPR002187 Nitrogen regulatory protein PII LL3_03797 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site LL3_03797 IPR013438 Sporulation stage V, protein E LL3_03797 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA LL3_03797 IPR013437 Probable peptidoglycan glycosyltransferase FtsW LL3_03798 IPR033879 Undecaprenyl-diphosphatase LL3_03798 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase LL3_03798 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily LL3_03799 IPR006976 VanZ-like LL3_03800 IPR016047 Peptidase M23 LL3_03800 IPR011055 Duplicated hybrid motif LL3_03801 IPR016181 Acyl-CoA N-acyltransferase LL3_03801 IPR000182 GNAT domain LL3_03802 IPR035287 Protein of unknown function DUF5362 LL3_03803 IPR020205 Uncharacterised protein family, YwnF, transmembrane LL3_03805 IPR022924 Cardiolipin synthase LL3_03805 IPR001736 Phospholipase D/Transphosphatidylase LL3_03805 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LL3_03805 IPR027379 Cardiolipin synthase N-terminal LL3_03805 IPR025202 Phospholipase D-like domain LL3_03805 IPR030874 Cardiolipin synthase, Firmicutes-type LL3_03807 IPR035287 Protein of unknown function DUF5362 LL3_03808 IPR016040 NAD(P)-binding domain LL3_03808 IPR036291 NAD(P)-binding domain superfamily LL3_03809 IPR036390 Winged helix DNA-binding domain superfamily LL3_03809 IPR000944 Transcription regulator Rrf2-type LL3_03809 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_03810 IPR029754 Urease nickel binding site LL3_03810 IPR017951 Urease alpha subunit, C-terminal LL3_03810 IPR005848 Urease, alpha subunit LL3_03810 IPR017950 Urease active site LL3_03810 IPR006680 Amidohydrolase-related LL3_03810 IPR011059 Metal-dependent hydrolase, composite domain superfamily LL3_03810 IPR032466 Metal-dependent hydrolase LL3_03810 IPR011612 Urease alpha-subunit, N-terminal domain LL3_03811 IPR002019 Urease, beta subunit LL3_03811 IPR036461 Urease, beta subunit superfamily LL3_03812 IPR012010 Urease, gamma subunit LL3_03812 IPR036463 Urease, gamma subunit superfamily LL3_03812 IPR002026 Urease, gamma/gamma-beta subunit LL3_03814 IPR008462 CsbD-like domain LL3_03814 IPR036629 YjbJ superfamily LL3_03816 IPR013026 Tetratricopeptide repeat-containing domain LL3_03816 IPR040702 Response regulator aspartate phosphatase, N-terminal LL3_03816 IPR011990 Tetratricopeptide-like helical domain superfamily LL3_03816 IPR041617 MalT-like TPR region LL3_03816 IPR019734 Tetratricopeptide repeat LL3_03817 IPR007197 Radical SAM LL3_03817 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site LL3_03817 IPR010505 Molybdenum cofactor synthesis C-terminal LL3_03817 IPR013483 Molybdenum cofactor biosynthesis protein A LL3_03817 IPR013785 Aldolase-type TIM barrel LL3_03817 IPR006638 Elp3/MiaB/NifB LL3_03818 IPR016193 Cytidine deaminase-like LL3_03818 IPR003786 Sulfur carrier protein FdhD LL3_03820 IPR002035 von Willebrand factor, type A LL3_03820 IPR036465 von Willebrand factor A-like domain superfamily LL3_03821 IPR002035 von Willebrand factor, type A LL3_03821 IPR036465 von Willebrand factor A-like domain superfamily LL3_03822 IPR013486 Sporulation stage II protein D, amidase enhancer LytB LL3_03822 IPR013693 Sporulation stage II protein D, amidase enhancer LytB N-terminal LL3_03822 IPR014225 Sporulation stage II, protein D firmicutes LL3_03823 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta LL3_03823 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase LL3_03823 IPR001986 Enolpyruvate transferase domain LL3_03823 IPR036968 Enolpyruvate transferase domain superfamily LL3_03824 IPR014794 TATA-box binding LL3_03824 IPR036209 YwmB-like superfamily LL3_03825 IPR009526 Protein of unknown function DUF1146 LL3_03827 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain LL3_03827 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily LL3_03827 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal LL3_03827 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit LL3_03827 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal LL3_03828 IPR005722 ATP synthase, F1 complex, beta subunit LL3_03828 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain LL3_03828 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain LL3_03828 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site LL3_03828 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily LL3_03828 IPR003593 AAA+ ATPase domain LL3_03828 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03828 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal LL3_03829 IPR000131 ATP synthase, F1 complex, gamma subunit LL3_03829 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site LL3_03829 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily LL3_03830 IPR005294 ATP synthase, F1 complex, alpha subunit LL3_03830 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03830 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain LL3_03830 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily LL3_03830 IPR033732 ATP synthase, F1 complex, alpha subunit nucleotide-binding domain LL3_03830 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily LL3_03830 IPR000793 ATP synthase, alpha subunit, C-terminal LL3_03830 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site LL3_03830 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain LL3_03830 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily LL3_03831 IPR000711 ATPase, OSCP/delta subunit LL3_03831 IPR020781 ATPase, OSCP/delta subunit, conserved site LL3_03831 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily LL3_03832 IPR005864 ATP synthase, F0 complex, subunit b, bacterial LL3_03832 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast LL3_03832 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily LL3_03833 IPR002379 V-ATPase proteolipid subunit C-like domain LL3_03833 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site LL3_03833 IPR038662 F1F0 ATP synthase subunit C superfamily LL3_03833 IPR000454 ATP synthase, F0 complex, subunit C LL3_03833 IPR035921 F/V-ATP synthase subunit C superfamily LL3_03833 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast LL3_03834 IPR035908 ATP synthase, F0 complex, subunit A superfamily LL3_03834 IPR023011 ATP synthase, F0 complex, subunit A, active site LL3_03834 IPR000568 ATP synthase, F0 complex, subunit A LL3_03835 IPR005598 ATP synthase protein I LL3_03835 IPR039072 ATP synthase protein I, Bacilli-type LL3_03837 IPR005765 Uracil phosphoribosyl transferase LL3_03837 IPR000836 Phosphoribosyltransferase domain LL3_03837 IPR034332 Uracil phosphoribosyltransferase, bacterial-type LL3_03837 IPR029057 Phosphoribosyltransferase-like LL3_03838 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site LL3_03838 IPR015424 Pyridoxal phosphate-dependent transferase LL3_03838 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_03838 IPR001085 Serine hydroxymethyltransferase LL3_03838 IPR039429 Serine hydroxymethyltransferase-like domain LL3_03838 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_03839 IPR006340 Protein of unknown function DUF436 LL3_03839 IPR028345 Aminoglycoside 3-N-acetyltransferase-like LL3_03840 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family LL3_03840 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily LL3_03840 IPR004785 Ribose 5-phosphate isomerase B LL3_03841 IPR017867 Protein-tyrosine phosphatase, low molecular weight LL3_03841 IPR036196 Phosphotyrosine protein phosphatase I superfamily LL3_03841 IPR023485 Phosphotyrosine protein phosphatase I LL3_03842 IPR003810 Putative manganese efflux pump LL3_03842 IPR022929 Putative manganese efflux pump MntP LL3_03843 IPR038385 Threonylcarbamoyl-AMP synthase, C-terminal domain superfamily LL3_03843 IPR010923 tRNA threonylcarbamoyladenosine biosynthesis protein SUA5 LL3_03843 IPR006070 YrdC-like domain LL3_03843 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily LL3_03843 IPR005145 Putative GTP-binding controlling metal-binding domain LL3_03844 IPR016181 Acyl-CoA N-acyltransferase LL3_03845 IPR014202 Sporulation stage II, protein R LL3_03846 IPR031374 Uncharacterised protein family UPF0715 LL3_03847 IPR035167 Protein of unknown function DUF5316 LL3_03848 IPR007848 Methyltransferase small domain LL3_03848 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_03848 IPR040758 Release factor glutamine methyltransferase, N-terminal domain LL3_03848 IPR002052 DNA methylase, N-6 adenine-specific, conserved site LL3_03848 IPR004556 Methyltransferase HemK-like LL3_03848 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific LL3_03849 IPR004373 Peptide chain release factor 1 LL3_03849 IPR000352 Peptide chain release factor class I LL3_03849 IPR005139 Peptide chain release factor LL3_03850 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase LL3_03850 IPR037523 Vicinal oxygen chelate (VOC) domain LL3_03850 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain LL3_03850 IPR037478 YwkD-like domain LL3_03851 IPR023522 Chromosome-anchoring protein RacA LL3_03851 IPR000551 MerR-type HTH domain LL3_03851 IPR009061 Putative DNA-binding domain superfamily LL3_03852 IPR014024 Auxin efflux carrier, plant type LL3_03852 IPR004776 Membrane transport protein LL3_03853 IPR001891 Malic oxidoreductase LL3_03853 IPR037062 Malic enzyme, N-terminal domain superfamily LL3_03853 IPR015884 Malic enzyme, conserved site LL3_03853 IPR036291 NAD(P)-binding domain superfamily LL3_03853 IPR012301 Malic enzyme, N-terminal domain LL3_03853 IPR012302 Malic enzyme, NAD-binding LL3_03854 IPR020633 Thymidine kinase, conserved site LL3_03854 IPR001267 Thymidine kinase LL3_03854 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03855 IPR027491 Ribosomal protein L31 type A LL3_03855 IPR002150 Ribosomal protein L31 LL3_03855 IPR042105 Ribosomal protein L31 superfamily LL3_03855 IPR034704 L28p-like LL3_03856 IPR041703 Transcription termination factor Rho, ATP binding domain LL3_03856 IPR036269 Rho termination factor, N-terminal domain superfamily LL3_03856 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03856 IPR012340 Nucleic acid-binding, OB-fold LL3_03856 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain LL3_03856 IPR003593 AAA+ ATPase domain LL3_03856 IPR004665 Transcription termination factor Rho LL3_03856 IPR011113 Rho termination factor, RNA-binding domain LL3_03856 IPR011129 Cold shock domain LL3_03856 IPR011112 Rho termination factor, N-terminal LL3_03857 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase LL3_03858 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase LL3_03858 IPR001986 Enolpyruvate transferase domain LL3_03858 IPR036968 Enolpyruvate transferase domain superfamily LL3_03858 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta LL3_03859 IPR022999 Transaldolase type 3B, putative LL3_03859 IPR018225 Transaldolase, active site LL3_03859 IPR033919 Transaldolase/Fructose-6-phosphate aldolase, archaeal/bacterial LL3_03859 IPR013785 Aldolase-type TIM barrel LL3_03859 IPR001585 Transaldolase/Fructose-6-phosphate aldolase LL3_03859 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase LL3_03860 IPR000771 Fructose-bisphosphate aldolase, class-II LL3_03860 IPR013785 Aldolase-type TIM barrel LL3_03860 IPR011289 Fructose-1,6-bisphosphate aldolase, class 2 LL3_03861 IPR011006 CheY-like superfamily LL3_03861 IPR001789 Signal transduction response regulator, receiver domain LL3_03862 IPR019676 Domain of unknown function (DUF2529) LL3_03863 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03863 IPR033828 CTP synthase GATase domain LL3_03863 IPR017926 Glutamine amidotransferase LL3_03863 IPR017456 CTP synthase, N-terminal LL3_03863 IPR004468 CTP synthase LL3_03863 IPR029062 Class I glutamine amidotransferase-like LL3_03864 IPR029757 DNA-directed RNA polymerase subunit delta LL3_03864 IPR007759 HB1/Asxl, restriction endonuclease HTH domain LL3_03864 IPR038087 DNA-directed RNA polymerase subunit delta domain superfamily LL3_03865 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain LL3_03865 IPR004017 Cysteine-rich domain LL3_03865 IPR009051 Alpha-helical ferredoxin LL3_03865 IPR036197 NarG-like superfamily LL3_03865 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site LL3_03866 IPR022924 Cardiolipin synthase LL3_03866 IPR025202 Phospholipase D-like domain LL3_03866 IPR001736 Phospholipase D/Transphosphatidylase LL3_03867 IPR023520 UV-endonuclease UvdE, bacterial LL3_03867 IPR004601 UV-endonuclease UvdE LL3_03867 IPR036237 Xylose isomerase-like superfamily LL3_03869 IPR003593 AAA+ ATPase domain LL3_03869 IPR011527 ABC transporter type 1, transmembrane domain LL3_03869 IPR036640 ABC transporter type 1, transmembrane domain superfamily LL3_03869 IPR003439 ABC transporter-like LL3_03869 IPR017871 ABC transporter, conserved site LL3_03869 IPR039421 Type I protein exporter LL3_03869 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_03870 IPR030874 Cardiolipin synthase, Firmicutes-type LL3_03870 IPR001736 Phospholipase D/Transphosphatidylase LL3_03870 IPR025202 Phospholipase D-like domain LL3_03870 IPR027379 Cardiolipin synthase N-terminal LL3_03870 IPR022924 Cardiolipin synthase LL3_03871 IPR003816 Nitrate reductase, gamma subunit LL3_03871 IPR036197 NarG-like superfamily LL3_03871 IPR023234 NarG-like domain LL3_03872 IPR036411 TorD-like superfamily LL3_03872 IPR003765 Nitrate reductase chaperone, NarJ LL3_03872 IPR042291 Nitrate reductase chaperone, NarJ, domain 2 LL3_03872 IPR042290 Nitrate reductase chaperone, NarJ, domain 1 LL3_03872 IPR020945 DMSO/Nitrate reductase chaperone LL3_03873 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain LL3_03873 IPR006547 Nitrate reductase, beta subunit LL3_03873 IPR038262 Nitrate reductase beta, C-terminal domain superfamily LL3_03873 IPR029263 Respiratory nitrate reductase beta, C-terminal LL3_03874 IPR006657 Molybdopterin dinucleotide-binding domain LL3_03874 IPR037943 Nitrate reductase alpha subunit-like, MopB domain LL3_03874 IPR028189 Nitrate reductase, alpha subunit, N-terminal LL3_03874 IPR006656 Molybdopterin oxidoreductase LL3_03874 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site LL3_03874 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site LL3_03874 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain LL3_03874 IPR009010 Aspartate decarboxylase-like domain superfamily LL3_03874 IPR006468 Nitrate reductase, alpha subunit LL3_03875 IPR014710 RmlC-like jelly roll fold LL3_03875 IPR018490 Cyclic nucleotide-binding-like LL3_03876 IPR025576 YwiC-like protein LL3_03877 IPR012318 Crp-type HTH domain LL3_03877 IPR018490 Cyclic nucleotide-binding-like LL3_03877 IPR014710 RmlC-like jelly roll fold LL3_03877 IPR018335 Transcription regulator HTH, Crp-type, conserved site LL3_03877 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_03877 IPR036390 Winged helix DNA-binding domain superfamily LL3_03877 IPR000595 Cyclic nucleotide-binding domain LL3_03878 IPR011701 Major facilitator superfamily LL3_03878 IPR036259 MFS transporter superfamily LL3_03878 IPR020846 Major facilitator superfamily domain LL3_03879 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site LL3_03879 IPR035684 Arginyl-tRNA synthetase, catalytic core domain LL3_03879 IPR008909 DALR anticodon binding LL3_03879 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LL3_03879 IPR001278 Arginine-tRNA ligase LL3_03879 IPR005148 Arginyl tRNA synthetase N-terminal domain LL3_03879 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily LL3_03879 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding LL3_03880 IPR015231 Protein of unknown function DUF1934 LL3_03880 IPR012674 Calycin LL3_03882 IPR011045 Nitrous oxide reductase, N-terminal LL3_03882 IPR015943 WD40/YVTN repeat-like-containing domain superfamily LL3_03883 IPR011990 Tetratricopeptide-like helical domain superfamily LL3_03883 IPR019734 Tetratricopeptide repeat LL3_03883 IPR013026 Tetratricopeptide repeat-containing domain LL3_03883 IPR040702 Response regulator aspartate phosphatase, N-terminal LL3_03884 IPR025899 Phosphatase RapC/F inhibitor, PhrC/F LL3_03885 IPR020855 Ureohydrolase, manganese-binding site LL3_03885 IPR005925 Agmatinase-related LL3_03885 IPR023696 Ureohydrolase domain superfamily LL3_03885 IPR006035 Ureohydrolase LL3_03886 IPR030373 Polyamine biosynthesis domain, conserved site LL3_03886 IPR037163 Spermidine synthase, tetramerisation domain superfamily LL3_03886 IPR035246 Spermidine synthase, tetramerisation domain LL3_03886 IPR001045 Spermidine/spermine synthases LL3_03886 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_03886 IPR030374 Polyamine biosynthesis domain LL3_03887 IPR001460 Penicillin-binding protein, transpeptidase LL3_03887 IPR036950 Penicillin binding protein transglycosylase domain LL3_03887 IPR023346 Lysozyme-like domain superfamily LL3_03887 IPR001264 Glycosyl transferase, family 51 LL3_03887 IPR012338 Beta-lactamase/transpeptidase-like LL3_03889 IPR014852 Uncharacterised protein YwhD LL3_03890 IPR008915 Peptidase M50 LL3_03891 IPR018191 4-oxalocrotonate tautomerase, Pseudomonas-type LL3_03891 IPR014347 Tautomerase/MIF superfamily LL3_03891 IPR004370 4-oxalocrotonate tautomerase LL3_03892 IPR000835 MarR-type HTH domain LL3_03892 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_03892 IPR036390 Winged helix DNA-binding domain superfamily LL3_03893 IPR002293 Amino acid/polyamine transporter I LL3_03895 IPR006674 HD domain LL3_03895 IPR003607 HD/PDEase domain LL3_03897 IPR020880 Protein of unknown function UPF0741 LL3_03897 IPR009910 Protein of unknown function DUF1450 LL3_03898 IPR014243 Transcription factor, RsfA LL3_03898 IPR017877 Myb-like domain LL3_03899 IPR036390 Winged helix DNA-binding domain superfamily LL3_03899 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_03899 IPR005149 Transcription regulator PadR, N-terminal LL3_03902 IPR032688 ABC-2 family transporter protein LL3_03907 IPR024897 Octanoyltransferase LipL LL3_03907 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain LL3_03908 IPR005119 LysR, substrate-binding LL3_03908 IPR000847 Transcription regulator HTH, LysR LL3_03908 IPR036390 Winged helix DNA-binding domain superfamily LL3_03908 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_03909 IPR038770 Sodium/solute symporter superfamily LL3_03909 IPR018383 Uncharacterised protein family UPF0324, prokaryote LL3_03910 IPR042113 Phosphate acetyltransferase, domain 1 LL3_03910 IPR002505 Phosphate acetyl/butaryl transferase LL3_03910 IPR042112 Phosphate acetyltransferase, domain 2 LL3_03910 IPR004614 Phosphate acetyltransferase LL3_03910 IPR012147 Phosphate acetyl/butyryltransferase LL3_03912 IPR036291 NAD(P)-binding domain superfamily LL3_03912 IPR002347 Short-chain dehydrogenase/reductase SDR LL3_03913 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site LL3_03913 IPR015424 Pyridoxal phosphate-dependent transferase LL3_03913 IPR004839 Aminotransferase, class I/classII LL3_03913 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_03913 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_03914 IPR036259 MFS transporter superfamily LL3_03914 IPR011701 Major facilitator superfamily LL3_03914 IPR022324 Bacilysin exporter BacE, putative LL3_03915 IPR013815 ATP-grasp fold, subdomain 1 LL3_03915 IPR011761 ATP-grasp fold LL3_03916 IPR036291 NAD(P)-binding domain superfamily LL3_03916 IPR020904 Short-chain dehydrogenase/reductase, conserved site LL3_03916 IPR002347 Short-chain dehydrogenase/reductase SDR LL3_03917 IPR014710 RmlC-like jelly roll fold LL3_03917 IPR011051 RmlC-like cupin domain superfamily LL3_03917 IPR013096 Cupin 2, conserved barrel LL3_03919 IPR036259 MFS transporter superfamily LL3_03919 IPR020846 Major facilitator superfamily domain LL3_03919 IPR011701 Major facilitator superfamily LL3_03920 IPR004812 Drug resistance transporter Bcr/CmlA subfamily LL3_03920 IPR036259 MFS transporter superfamily LL3_03920 IPR020846 Major facilitator superfamily domain LL3_03920 IPR011701 Major facilitator superfamily LL3_03921 IPR004840 Amino acid permease, conserved site LL3_03921 IPR004841 Amino acid permease/ SLC12A domain LL3_03922 IPR012166 Uncharacterised protein family RocB LL3_03922 IPR002933 Peptidase M20 LL3_03923 IPR016161 Aldehyde/histidinol dehydrogenase LL3_03923 IPR029510 Aldehyde dehydrogenase, glutamic acid active site LL3_03923 IPR016160 Aldehyde dehydrogenase, cysteine active site LL3_03923 IPR016162 Aldehyde dehydrogenase, N-terminal LL3_03923 IPR015590 Aldehyde dehydrogenase domain LL3_03923 IPR005932 1-pyrroline-5-carboxylate dehydrogenase LL3_03923 IPR016163 Aldehyde dehydrogenase, C-terminal LL3_03925 IPR036291 NAD(P)-binding domain superfamily LL3_03925 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase LL3_03925 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain LL3_03925 IPR014362 Glutamate dehydrogenase LL3_03925 IPR033922 NAD(P) binding domain of glutamate dehydrogenase LL3_03925 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal LL3_03925 IPR033524 Leu/Phe/Val dehydrogenases active site LL3_03926 IPR034650 YuaB-like LL3_03926 IPR038480 YuaB-like superfamily LL3_03927 IPR011051 RmlC-like cupin domain superfamily LL3_03927 IPR014710 RmlC-like jelly roll fold LL3_03927 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related LL3_03928 IPR005913 dTDP-4-dehydrorhamnose reductase family LL3_03928 IPR036291 NAD(P)-binding domain superfamily LL3_03928 IPR029903 RmlD-like substrate binding domain LL3_03929 IPR016040 NAD(P)-binding domain LL3_03929 IPR036291 NAD(P)-binding domain superfamily LL3_03929 IPR005888 dTDP-glucose 4,6-dehydratase LL3_03930 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form LL3_03930 IPR005835 Nucleotidyl transferase domain LL3_03930 IPR029044 Nucleotide-diphospho-sugar transferases LL3_03931 IPR007235 Glycosyl transferase, family 28, C-terminal LL3_03932 IPR003329 Acylneuraminate cytidylyltransferase LL3_03932 IPR029044 Nucleotide-diphospho-sugar transferases LL3_03933 IPR013974 SAF domain LL3_03933 IPR036732 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain superfamily LL3_03933 IPR006190 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal LL3_03933 IPR013132 N-acetylneuraminic acid synthase, N-terminal LL3_03933 IPR013785 Aldolase-type TIM barrel LL3_03934 IPR000182 GNAT domain LL3_03934 IPR016181 Acyl-CoA N-acyltransferase LL3_03935 IPR015424 Pyridoxal phosphate-dependent transferase LL3_03935 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase LL3_03935 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_03935 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_03936 IPR007554 CDP-glycerol glycerophosphotransferase LL3_03937 IPR029044 Nucleotide-diphospho-sugar transferases LL3_03937 IPR001173 Glycosyltransferase 2-like LL3_03938 IPR014099 Spore coat protein GerQ LL3_03939 IPR006696 Protein of unknown function DUF423 LL3_03940 IPR006042 Xanthine/uracil permease LL3_03940 IPR006043 Xanthine/uracil/vitamin C permease LL3_03941 IPR035218 Protein of unknown function DUF5327 LL3_03942 IPR036895 Uracil-DNA glycosylase-like domain superfamily LL3_03942 IPR005122 Uracil-DNA glycosylase-like LL3_03942 IPR018085 Uracil-DNA glycosylase, active site LL3_03942 IPR002043 Uracil-DNA glycosylase family 1 LL3_03943 IPR029044 Nucleotide-diphospho-sugar transferases LL3_03943 IPR001173 Glycosyltransferase 2-like LL3_03945 IPR029056 Ribokinase-like LL3_03945 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase LL3_03945 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase LL3_03947 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily LL3_03947 IPR013148 Glycosyl hydrolase family 32, N-terminal LL3_03947 IPR006232 Sucrose-6-phosphate hydrolase LL3_03947 IPR013189 Glycosyl hydrolase family 32, C-terminal LL3_03947 IPR018053 Glycoside hydrolase, family 32, active site LL3_03947 IPR001362 Glycoside hydrolase, family 32 LL3_03947 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily LL3_03948 IPR036878 Glucose permease domain IIB LL3_03948 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site LL3_03948 IPR003352 Phosphotransferase system, EIIC LL3_03948 IPR001996 Phosphotransferase system, IIB component, type 1 LL3_03948 IPR010973 Phosphotransferase system, sucrose-specific IIBC component LL3_03948 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component LL3_03948 IPR013013 Phosphotransferase system, EIIC component, type 1 LL3_03949 IPR001550 Transcription antiterminator, conserved site LL3_03949 IPR036634 PRD domain superfamily LL3_03949 IPR036650 CAT RNA-binding domain superfamily LL3_03949 IPR004341 CAT RNA-binding domain LL3_03949 IPR011608 PRD domain LL3_03951 IPR034213 Vpr-like peptidase, catalytic domain LL3_03951 IPR010259 Peptidase S8 propeptide/proteinase inhibitor I9 LL3_03951 IPR025965 FlgD Ig-like domain LL3_03951 IPR003137 PA domain LL3_03951 IPR000209 Peptidase S8/S53 domain LL3_03951 IPR036852 Peptidase S8/S53 domain superfamily LL3_03951 IPR023827 Peptidase S8, subtilisin, Asp-active site LL3_03951 IPR022398 Peptidase S8, subtilisin, His-active site LL3_03951 IPR023828 Peptidase S8, subtilisin, Ser-active site LL3_03951 IPR015500 Peptidase S8, subtilisin-related LL3_03951 IPR037045 Peptidase S8 propeptide/proteinase inhibitor I9 superfamily LL3_03952 IPR036661 Luciferase-like domain superfamily LL3_03952 IPR011251 Luciferase-like domain LL3_03952 IPR019949 Luciferase family oxidoreductase, group 1 LL3_03953 IPR028349 Protein PafC LL3_03953 IPR013196 Helix-turn-helix, type 11 LL3_03953 IPR001034 DeoR-type HTH domain LL3_03953 IPR036390 Winged helix DNA-binding domain superfamily LL3_03953 IPR026881 WYL domain LL3_03953 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_03954 IPR020904 Short-chain dehydrogenase/reductase, conserved site LL3_03954 IPR002347 Short-chain dehydrogenase/reductase SDR LL3_03954 IPR036291 NAD(P)-binding domain superfamily LL3_03957 IPR000415 Nitroreductase-like LL3_03957 IPR029479 Nitroreductase LL3_03957 IPR016446 Flavin oxidoreductase Frp family LL3_03958 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site LL3_03958 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA LL3_03958 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB LL3_03959 IPR000182 GNAT domain LL3_03959 IPR016181 Acyl-CoA N-acyltransferase LL3_03961 IPR020185 Spore morphogenesis/germination protein YwcE LL3_03962 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes LL3_03962 IPR014250 Quinol oxidase subunit IV LL3_03963 IPR035973 Cytochrome c oxidase subunit III-like superfamily LL3_03963 IPR024791 Cytochrome c oxidase subunit III LL3_03963 IPR000298 Cytochrome c oxidase subunit III-like LL3_03963 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle LL3_03963 IPR014246 Quinol oxidase subunit III LL3_03963 IPR033946 Ubiquinol oxidase subunit III domain LL3_03964 IPR000883 Cytochrome c oxidase subunit I LL3_03964 IPR036927 Cytochrome c oxidase-like, subunit I superfamily LL3_03964 IPR014233 Quinol oxidase subunit I LL3_03964 IPR023616 Cytochrome c oxidase-like, subunit I domain LL3_03964 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site LL3_03965 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily LL3_03965 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain LL3_03965 IPR034227 Ubiquinol oxidase subunit 2, cupredoxin domain LL3_03965 IPR006332 Quinol oxidase subunit II LL3_03965 IPR008972 Cupredoxin LL3_03965 IPR006333 Cytochrome o ubiquinol oxidase subunit II LL3_03965 IPR002429 Cytochrome c oxidase subunit II-like C-terminal LL3_03966 IPR007341 Transglycosylase-associated protein LL3_03967 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal LL3_03967 IPR023425 Galactose-1-phosphate uridyl transferase, class II, conserved site LL3_03967 IPR000766 Galactose-1-phosphate uridyl transferase, class II LL3_03967 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal LL3_03968 IPR006206 Mevalonate/galactokinase LL3_03968 IPR020568 Ribosomal protein S5 domain 2-type fold LL3_03968 IPR019741 Galactokinase, conserved site LL3_03968 IPR013750 GHMP kinase, C-terminal domain LL3_03968 IPR036554 GHMP kinase, C-terminal domain superfamily LL3_03968 IPR006204 GHMP kinase N-terminal domain LL3_03968 IPR019539 Galactokinase galactose-binding domain LL3_03968 IPR000705 Galactokinase LL3_03968 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup LL3_03968 IPR022963 Galactokinase, bacterial LL3_03968 IPR006203 GHMP kinase, ATP-binding, conserved site LL3_03969 IPR007267 GtrA-like protein LL3_03970 IPR001647 DNA-binding HTH domain, TetR-type LL3_03970 IPR009057 Homeobox-like domain superfamily LL3_03970 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily LL3_03971 IPR036281 SinR repressor/SinI anti-repressor, dimerisation domain superfamily LL3_03971 IPR010981 SinR repressor/SinI anti-repressor, dimerisation domain LL3_03975 IPR001853 DSBA-like thioredoxin domain LL3_03975 IPR036249 Thioredoxin-like superfamily LL3_03976 IPR006314 Dyp-type peroxidase LL3_03976 IPR006313 Deferrochelatase/peroxidase EfeB LL3_03976 IPR011008 Dimeric alpha-beta barrel LL3_03976 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal LL3_03976 IPR006311 Twin-arginine translocation pathway, signal sequence LL3_03977 IPR034981 EfeO/Algp7, imelysin-like domain LL3_03977 IPR038352 Imelysin-like domain superfamily LL3_03977 IPR018976 Imelysin-like domain LL3_03978 IPR004923 Iron permease FTR1/Fip1/EfeU LL3_03979 IPR013785 Aldolase-type TIM barrel LL3_03979 IPR034291 Thiamine phosphate synthase LL3_03979 IPR036206 Thiamin phosphate synthase superfamily LL3_03979 IPR022998 Thiamine phosphate synthase/TenI LL3_03980 IPR000417 Hydroxyethylthiazole kinase LL3_03980 IPR029056 Ribokinase-like LL3_03981 IPR000847 Transcription regulator HTH, LysR LL3_03981 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_03981 IPR005119 LysR, substrate-binding LL3_03981 IPR036390 Winged helix DNA-binding domain superfamily LL3_03982 IPR005538 LrgA/CidA family LL3_03982 IPR023760 Holin-like protein CidA LL3_03983 IPR007300 CidB/LrgB family LL3_03983 IPR005261 Conserved hypothetical protein CHP00659 LL3_03985 IPR019240 Protein of unknown function DUF2196 LL3_03986 IPR036244 TipA-like multidrug resistance regulator, antibiotic-recognition domain LL3_03986 IPR009061 Putative DNA-binding domain superfamily LL3_03986 IPR000551 MerR-type HTH domain LL3_03986 IPR012925 TipAS antibiotic-recognition domain LL3_03987 IPR018728 Domain of unknown function DUF2268 LL3_03988 IPR041532 RlmI, PUA-like domain LL3_03988 IPR002478 PUA domain LL3_03988 IPR015947 PUA-like superfamily LL3_03988 IPR036974 PUA domain superfamily LL3_03988 IPR019614 S-adenosylmethionine-dependent methyltransferase LL3_03988 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_03989 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain LL3_03989 IPR018146 Glyoxalase I, conserved site LL3_03989 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase LL3_03989 IPR037523 Vicinal oxygen chelate (VOC) domain LL3_03990 IPR004796 Phosphotransferase system, cellobiose-type IIC component LL3_03990 IPR004501 Phosphotransferase system, EIIC component, type 3 LL3_03990 IPR003352 Phosphotransferase system, EIIC LL3_03991 IPR000209 Peptidase S8/S53 domain LL3_03991 IPR036852 Peptidase S8/S53 domain superfamily LL3_03991 IPR023827 Peptidase S8, subtilisin, Asp-active site LL3_03991 IPR022398 Peptidase S8, subtilisin, His-active site LL3_03991 IPR015500 Peptidase S8, subtilisin-related LL3_03991 IPR037045 Peptidase S8 propeptide/proteinase inhibitor I9 superfamily LL3_03991 IPR041909 Sbi, C3 binding domain IV LL3_03991 IPR034202 Subtilisin Carlsberg-like catalytic domain LL3_03991 IPR023828 Peptidase S8, subtilisin, Ser-active site LL3_03992 IPR002495 Glycosyl transferase, family 8 LL3_03992 IPR029044 Nucleotide-diphospho-sugar transferases LL3_03995 IPR007685 RelA/SpoT LL3_03996 IPR026046 UbiA prenyltransferase domain containing protein 1 LL3_03996 IPR000537 UbiA prenyltransferase family LL3_03996 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase LL3_03998 IPR021008 Protein of unknown function DUF3687 LL3_03999 IPR010072 D-alanine--D-alanyl carrier protein ligase LL3_03999 IPR010071 Amino acid adenylation domain LL3_03999 IPR025110 AMP-binding enzyme, C-terminal domain LL3_03999 IPR020845 AMP-binding, conserved site LL3_03999 IPR042099 AMP-dependent synthetase-like superfamily LL3_03999 IPR000873 AMP-dependent synthetase/ligase LL3_04000 IPR024024 D-alanyl transfer protein DltB LL3_04000 IPR024194 Alginate O-acetyltransferase AlgI/D-alanyl transfer protein DltB LL3_04000 IPR004299 Membrane bound O-acyl transferase, MBOAT LL3_04001 IPR036736 ACP-like superfamily LL3_04001 IPR009081 Phosphopantetheine binding ACP domain LL3_04001 IPR003230 D-alanyl carrier protein LL3_04002 IPR023896 D-alanyl-lipoteichoic acid biosynthesis DltD, Firmicutes LL3_04002 IPR006998 DltD LL3_04003 IPR001544 Aminotransferase class IV LL3_04003 IPR036038 Aminotransferase-like, PLP-dependent enzymes LL3_04003 IPR018300 Aminotransferase, class IV, conserved site LL3_04003 IPR005786 Branched-chain amino acid aminotransferase II LL3_04003 IPR033939 Branched-chain aminotransferase LL3_04004 IPR036291 NAD(P)-binding domain superfamily LL3_04004 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal LL3_04004 IPR022616 Glycosyl hydrolase, family 4, C-terminal LL3_04004 IPR019802 Glycoside hydrolase, family 4, conserved site LL3_04004 IPR001088 Glycoside hydrolase, family 4 LL3_04005 IPR036542 Phosphotransferase system, lactose/cellobiose-type IIA subunit superfamily LL3_04005 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit LL3_04006 IPR004501 Phosphotransferase system, EIIC component, type 3 LL3_04006 IPR003352 Phosphotransferase system, EIIC LL3_04006 IPR004796 Phosphotransferase system, cellobiose-type IIC component LL3_04007 IPR036095 PTS system IIB component-like superfamily LL3_04007 IPR003501 Phosphotransferase system, EIIB component, type 2/3 LL3_04007 IPR013012 Phosphotransferase system, EIIB component, type 3 LL3_04010 IPR036995 Methylpurine-DNA glycosylase superfamily LL3_04010 IPR003180 Methylpurine-DNA glycosylase LL3_04010 IPR011034 Formyl transferase-like, C-terminal domain superfamily LL3_04012 IPR000522 ABC transporter, permease protein, BtuC-like LL3_04012 IPR037294 ABC transporter, BtuC-like LL3_04013 IPR037294 ABC transporter, BtuC-like LL3_04013 IPR000522 ABC transporter, permease protein, BtuC-like LL3_04015 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_04015 IPR036390 Winged helix DNA-binding domain superfamily LL3_04015 IPR011991 ArsR-like helix-turn-helix domain LL3_04015 IPR001845 HTH ArsR-type DNA-binding domain LL3_04016 IPR000802 Arsenical pump membrane protein, ArsB LL3_04017 IPR003501 Phosphotransferase system, EIIB component, type 2/3 LL3_04017 IPR013012 Phosphotransferase system, EIIB component, type 3 LL3_04017 IPR036095 PTS system IIB component-like superfamily LL3_04018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit LL3_04018 IPR036542 Phosphotransferase system, lactose/cellobiose-type IIA subunit superfamily LL3_04019 IPR003352 Phosphotransferase system, EIIC LL3_04019 IPR004501 Phosphotransferase system, EIIC component, type 3 LL3_04019 IPR004796 Phosphotransferase system, cellobiose-type IIC component LL3_04020 IPR018120 Glycoside hydrolase family 1, active site LL3_04020 IPR001360 Glycoside hydrolase family 1 LL3_04020 IPR017853 Glycoside hydrolase superfamily LL3_04021 IPR000600 ROK family LL3_04022 IPR001250 Mannose-6-phosphate isomerase, type I LL3_04022 IPR014710 RmlC-like jelly roll fold LL3_04022 IPR011051 RmlC-like cupin domain superfamily LL3_04022 IPR014628 Mannose-6-phosphate isomerase, Firmicutes type, short form LL3_04023 IPR016714 Mannan endo-1,4-beta-mannosidase LL3_04023 IPR017853 Glycoside hydrolase superfamily LL3_04023 IPR022790 Glycosyl hydrolase family 26 domain LL3_04023 IPR000805 Glycoside hydrolase family 26 LL3_04024 IPR011614 Catalase core domain LL3_04024 IPR020835 Catalase superfamily LL3_04024 IPR010582 Catalase immune-responsive domain LL3_04024 IPR002226 Catalase haem-binding site LL3_04024 IPR037060 Catalase core domain superfamily LL3_04024 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 LL3_04024 IPR024708 Catalase active site LL3_04024 IPR018028 Catalase, mono-functional, haem-containing LL3_04025 IPR029132 Choloylglycine hydrolase/NAAA C-terminal LL3_04025 IPR029055 Nucleophile aminohydrolases, N-terminal LL3_04026 IPR026030 Purine-cytosine permease Fcy2/21/22 LL3_04026 IPR038271 Purine-cytosine permease superfamily LL3_04026 IPR001248 Purine-cytosine permease LL3_04027 IPR017953 Carbohydrate kinase, predicted, conserved site LL3_04027 IPR029056 Ribokinase-like LL3_04027 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase LL3_04028 IPR011527 ABC transporter type 1, transmembrane domain LL3_04028 IPR036640 ABC transporter type 1, transmembrane domain superfamily LL3_04028 IPR003593 AAA+ ATPase domain LL3_04028 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_04028 IPR017871 ABC transporter, conserved site LL3_04028 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC LL3_04028 IPR003439 ABC transporter-like LL3_04029 IPR003593 AAA+ ATPase domain LL3_04029 IPR036640 ABC transporter type 1, transmembrane domain superfamily LL3_04029 IPR003439 ABC transporter-like LL3_04029 IPR039421 Type I protein exporter LL3_04029 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_04029 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD LL3_04029 IPR017871 ABC transporter, conserved site LL3_04029 IPR011527 ABC transporter type 1, transmembrane domain LL3_04030 IPR003317 Cytochrome ubiquinol oxidase subunit 2 LL3_04031 IPR002585 Cytochrome ubiquinol oxidase subunit 1 LL3_04032 IPR004679 2-hydroxycarboxylate transporter LL3_04032 IPR018025 2-hydroxycarboxylate transporter, Proteobacteria/Firmicutes LL3_04033 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel LL3_04033 IPR002509 NodB homology domain LL3_04034 IPR008995 Molybdate/tungstate binding, C-terminal LL3_04034 IPR017871 ABC transporter, conserved site LL3_04034 IPR003439 ABC transporter-like LL3_04034 IPR003593 AAA+ ATPase domain LL3_04034 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_04034 IPR040582 MalK, OB fold domain LL3_04034 IPR005116 Transport-associated OB, type 1 LL3_04035 IPR025736 PucR C-terminal helix-turn-helix domain LL3_04035 IPR042070 PucR C-terminal helix-turn-helix domain superfamily LL3_04036 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal LL3_04036 IPR003740 Uncharacterised membrane protein YitT LL3_04036 IPR019264 Domain of unknown function DUF2179 LL3_04037 IPR029050 Immunoprotective extracellular, immunoglobulin-like domain superfamily LL3_04037 IPR029051 Domain of unknown function DUF4352 LL3_04038 IPR036291 NAD(P)-binding domain superfamily LL3_04038 IPR005886 UDP-glucose 4-epimerase LL3_04038 IPR016040 NAD(P)-binding domain LL3_04040 IPR010161 Peptidase M20B, tripeptide aminopeptidase LL3_04040 IPR011650 Peptidase M20, dimerisation domain LL3_04040 IPR002933 Peptidase M20 LL3_04040 IPR036264 Bacterial exopeptidase dimerisation domain LL3_04040 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site LL3_04044 IPR038595 LURP-one-related superfamily LL3_04044 IPR007612 LURP-one-related LL3_04044 IPR025659 Tubby-like, C-terminal LL3_04045 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal LL3_04045 IPR038071 UROD/MetE-like superfamily LL3_04046 IPR013216 Methyltransferase type 11 LL3_04046 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_04046 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted LL3_04048 IPR008276 Concentrative nucleoside transporter LL3_04048 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial LL3_04048 IPR011657 Concentrative nucleoside transporter C-terminal domain LL3_04048 IPR002668 Concentrative nucleoside transporter N-terminal domain LL3_04052 IPR020835 Catalase superfamily LL3_04052 IPR024708 Catalase active site LL3_04052 IPR024712 Catalase, mono-functional, haem-containing, clade 2 LL3_04052 IPR037060 Catalase core domain superfamily LL3_04052 IPR041399 Large catalase, C-terminal domain LL3_04052 IPR011614 Catalase core domain LL3_04052 IPR010582 Catalase immune-responsive domain LL3_04052 IPR018028 Catalase, mono-functional, haem-containing LL3_04052 IPR029062 Class I glutamine amidotransferase-like LL3_04052 IPR002226 Catalase haem-binding site LL3_04053 IPR014738 Citrate transporter LL3_04053 IPR004680 Citrate transporter-like domain LL3_04054 IPR008263 Glycoside hydrolase, family 16, active site LL3_04054 IPR000757 Glycoside hydrolase family 16 LL3_04054 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily LL3_04054 IPR008264 Beta-glucanase LL3_04055 IPR004341 CAT RNA-binding domain LL3_04055 IPR036650 CAT RNA-binding domain superfamily LL3_04055 IPR011608 PRD domain LL3_04055 IPR036634 PRD domain superfamily LL3_04055 IPR001550 Transcription antiterminator, conserved site LL3_04056 IPR024671 Autophagy-related protein 22-like LL3_04056 IPR020846 Major facilitator superfamily domain LL3_04056 IPR036259 MFS transporter superfamily LL3_04057 IPR014014 RNA helicase, DEAD-box type, Q motif LL3_04057 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain LL3_04057 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site LL3_04057 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_04057 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily LL3_04057 IPR001650 Helicase, C-terminal LL3_04057 IPR014001 Helicase superfamily 1/2, ATP-binding domain LL3_04057 IPR028619 ATP-dependent RNA helicase DbpA LL3_04057 IPR011545 DEAD/DEAH box helicase domain LL3_04060 IPR025551 Immunity protein WapI-like LL3_04068 IPR011050 Pectin lyase fold/virulence factor LL3_04068 IPR012334 Pectin lyase fold LL3_04068 IPR002022 Pectate lyase LL3_04069 IPR000620 EamA domain LL3_04070 IPR006016 UspA LL3_04070 IPR006015 Universal stress protein A family LL3_04070 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LL3_04071 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site LL3_04071 IPR018120 Glycoside hydrolase family 1, active site LL3_04071 IPR017853 Glycoside hydrolase superfamily LL3_04071 IPR001360 Glycoside hydrolase family 1 LL3_04072 IPR011055 Duplicated hybrid motif LL3_04072 IPR003352 Phosphotransferase system, EIIC LL3_04072 IPR036878 Glucose permease domain IIB LL3_04072 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site LL3_04072 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 LL3_04072 IPR001996 Phosphotransferase system, IIB component, type 1 LL3_04072 IPR011297 Phosphotransferase system, beta-glucoside-specific IIABC component LL3_04072 IPR013013 Phosphotransferase system, EIIC component, type 1 LL3_04074 IPR018117 DNA methylase, C-5 cytosine-specific, active site LL3_04074 IPR031303 DNA methylase, C-5 cytosine-specific, conserved site LL3_04074 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_04074 IPR001525 C-5 cytosine methyltransferase LL3_04075 IPR014762 DNA mismatch repair, conserved site LL3_04075 IPR020667 DNA mismatch repair protein, MutL LL3_04075 IPR042120 MutL, C-terminal domain, dimerisation subdomain LL3_04075 IPR002099 DNA mismatch repair protein family, N-terminal LL3_04075 IPR014790 MutL, C-terminal, dimerisation LL3_04075 IPR038973 DNA mismatch repair protein MutL/Mlh/Pms LL3_04075 IPR042121 MutL, C-terminal domain, regulatory subdomain LL3_04075 IPR037198 MutL, C-terminal domain superfamily LL3_04075 IPR020568 Ribosomal protein S5 domain 2-type fold LL3_04075 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup LL3_04075 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_04075 IPR013507 DNA mismatch repair protein, S5 domain 2-like LL3_04079 IPR032291 Extracellular endo-alpha-(1->5)-L-arabinanase, C-terminal LL3_04079 IPR006710 Glycoside hydrolase, family 43 LL3_04079 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily LL3_04080 IPR015111 Hut operon regulatory protein HutP LL3_04080 IPR023552 Hut operon regulatory protein HutP, bacillales LL3_04080 IPR036482 Hut operon regulatory protein HutP superfamily LL3_04081 IPR008948 L-Aspartase-like LL3_04081 IPR005921 Histidine ammonia-lyase LL3_04081 IPR024083 Fumarase/histidase, N-terminal LL3_04081 IPR001106 Aromatic amino acid lyase LL3_04081 IPR022313 Phenylalanine/histidine ammonia-lyases, active site LL3_04082 IPR035400 Urocanase, N-terminal domain LL3_04082 IPR036190 Urocanase superfamily LL3_04082 IPR035085 Urocanase, Rossmann-like domain LL3_04082 IPR023636 Urocanase conserved site LL3_04082 IPR038364 Urocanase, central domain superfamily LL3_04082 IPR035401 Urocanase, C-terminal domain LL3_04082 IPR023637 Urocanase LL3_04083 IPR011059 Metal-dependent hydrolase, composite domain superfamily LL3_04083 IPR005920 Imidazolonepropionase LL3_04083 IPR006680 Amidohydrolase-related LL3_04083 IPR032466 Metal-dependent hydrolase LL3_04084 IPR006035 Ureohydrolase LL3_04084 IPR005923 Formiminoglutamase LL3_04084 IPR020855 Ureohydrolase, manganese-binding site LL3_04084 IPR023696 Ureohydrolase domain superfamily LL3_04085 IPR004840 Amino acid permease, conserved site LL3_04085 IPR004841 Amino acid permease/ SLC12A domain LL3_04086 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily LL3_04086 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily LL3_04086 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily LL3_04086 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal LL3_04086 IPR000312 Glycosyl transferase, family 3 LL3_04086 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site LL3_04086 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase LL3_04086 IPR017459 Glycosyl transferase family 3, N-terminal domain LL3_04086 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic LL3_04087 IPR002668 Concentrative nucleoside transporter N-terminal domain LL3_04087 IPR008276 Concentrative nucleoside transporter LL3_04087 IPR011657 Concentrative nucleoside transporter C-terminal domain LL3_04087 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial LL3_04088 IPR002915 DeoC/FbaB/ lacD aldolase LL3_04088 IPR011343 Deoxyribose-phosphate aldolase LL3_04088 IPR028581 Deoxyribose-phosphate aldolase type I LL3_04088 IPR013785 Aldolase-type TIM barrel LL3_04089 IPR013324 RNA polymerase sigma factor, region 3/4-like LL3_04089 IPR037171 NagB/RpiA transferase-like LL3_04089 IPR007324 Sugar-binding domain, putative LL3_04090 IPR006379 HAD-superfamily hydrolase, subfamily IIB LL3_04090 IPR036412 HAD-like superfamily LL3_04090 IPR000150 Cof family LL3_04090 IPR023214 HAD superfamily LL3_04092 IPR021664 Protein of unknown function DUF3255 LL3_04092 IPR012674 Calycin LL3_04096 IPR002491 ABC transporter periplasmic binding domain LL3_04097 IPR006542 Protein of unknown function DUF1093 LL3_04097 IPR036166 YxeA-like superfamily LL3_04098 IPR003838 ABC transporter permease protein domain LL3_04098 IPR027022 ABC transporter permease protein, BceB-type LL3_04099 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_04099 IPR017871 ABC transporter, conserved site LL3_04099 IPR003439 ABC transporter-like LL3_04099 IPR003593 AAA+ ATPase domain LL3_04100 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_04100 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LL3_04100 IPR003594 Histidine kinase/HSP90-like ATPase LL3_04100 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LL3_04100 IPR005467 Histidine kinase domain LL3_04101 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_04101 IPR001789 Signal transduction response regulator, receiver domain LL3_04101 IPR016032 Signal transduction response regulator, C-terminal effector LL3_04101 IPR039420 Transcriptional regulatory protein WalR-like LL3_04101 IPR001867 OmpR/PhoB-type DNA-binding domain LL3_04101 IPR011006 CheY-like superfamily LL3_04102 IPR000771 Fructose-bisphosphate aldolase, class-II LL3_04102 IPR013785 Aldolase-type TIM barrel LL3_04102 IPR011289 Fructose-1,6-bisphosphate aldolase, class 2 LL3_04103 IPR013022 Xylose isomerase-like, TIM barrel domain LL3_04103 IPR036237 Xylose isomerase-like superfamily LL3_04104 IPR036237 Xylose isomerase-like superfamily LL3_04104 IPR013022 Xylose isomerase-like, TIM barrel domain LL3_04105 IPR000683 Oxidoreductase, N-terminal LL3_04105 IPR004104 Oxidoreductase, C-terminal LL3_04105 IPR023794 Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase LL3_04105 IPR036291 NAD(P)-binding domain superfamily LL3_04106 IPR011701 Major facilitator superfamily LL3_04106 IPR036259 MFS transporter superfamily LL3_04106 IPR020846 Major facilitator superfamily domain LL3_04106 IPR005829 Sugar transporter, conserved site LL3_04107 IPR023952 Inosose dehydratase LL3_04107 IPR013022 Xylose isomerase-like, TIM barrel domain LL3_04107 IPR030823 IolE/MocC family LL3_04107 IPR036237 Xylose isomerase-like superfamily LL3_04108 IPR023757 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase, Firmicutes LL3_04108 IPR029061 Thiamin diphosphate-binding fold LL3_04108 IPR012000 Thiamine pyrophosphate enzyme, central domain LL3_04108 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain LL3_04108 IPR000399 TPP-binding enzyme, conserved site LL3_04108 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding LL3_04108 IPR029035 DHS-like NAD/FAD-binding domain superfamily LL3_04108 IPR030817 3,5/4-Trihydroxycyclohexa-1,2-dione hydrolase LL3_04109 IPR030830 5-Dehydro-2-deoxygluconokinase LL3_04109 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site LL3_04109 IPR029056 Ribokinase-like LL3_04109 IPR011611 Carbohydrate kinase PfkB LL3_04109 IPR023314 5-Dehydro-2-deoxygluconokinase-like superfamily LL3_04109 IPR022841 5-dehydro-2-deoxygluconokinase, Firmicutes LL3_04110 IPR024203 5-deoxy-glucuronate isomerase, IolB LL3_04110 IPR023770 5-deoxy-glucuronate isomerase, Bacilli LL3_04110 IPR021120 KduI/IolB isomerase LL3_04110 IPR014710 RmlC-like jelly roll fold LL3_04110 IPR011051 RmlC-like cupin domain superfamily LL3_04111 IPR016160 Aldehyde dehydrogenase, cysteine active site LL3_04111 IPR016163 Aldehyde dehydrogenase, C-terminal LL3_04111 IPR016161 Aldehyde/histidinol dehydrogenase LL3_04111 IPR016162 Aldehyde dehydrogenase, N-terminal LL3_04111 IPR015590 Aldehyde dehydrogenase domain LL3_04111 IPR010061 Methylmalonate-semialdehyde dehydrogenase LL3_04111 IPR023510 Methylmalonate-semialdehyde dehydrogenase, Gram-positive bacteria LL3_04112 IPR014036 DeoR C-terminal sensor domain LL3_04112 IPR036390 Winged helix DNA-binding domain superfamily LL3_04112 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_04112 IPR001034 DeoR-type HTH domain LL3_04112 IPR037171 NagB/RpiA transferase-like LL3_04112 IPR018356 Transcription regulator, HTH DeoR-type, conserved site LL3_04113 IPR018170 Aldo/keto reductase, conserved site LL3_04113 IPR020471 Aldo/keto reductase LL3_04113 IPR023210 NADP-dependent oxidoreductase domain LL3_04113 IPR036812 NADP-dependent oxidoreductase domain superfamily LL3_04114 IPR005828 Major facilitator, sugar transporter-like LL3_04114 IPR036259 MFS transporter superfamily LL3_04114 IPR020846 Major facilitator superfamily domain LL3_04114 IPR003663 Sugar/inositol transporter LL3_04114 IPR005829 Sugar transporter, conserved site LL3_04115 IPR003594 Histidine kinase/HSP90-like ATPase LL3_04115 IPR037196 HSP90, C-terminal domain LL3_04115 IPR020575 Heat shock protein Hsp90, N-terminal LL3_04115 IPR020568 Ribosomal protein S5 domain 2-type fold LL3_04115 IPR001404 Heat shock protein Hsp90 family LL3_04115 IPR019805 Heat shock protein Hsp90, conserved site LL3_04115 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_04116 IPR002347 Short-chain dehydrogenase/reductase SDR LL3_04116 IPR020904 Short-chain dehydrogenase/reductase, conserved site LL3_04116 IPR036291 NAD(P)-binding domain superfamily LL3_04117 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_04117 IPR011006 CheY-like superfamily LL3_04117 IPR016032 Signal transduction response regulator, C-terminal effector LL3_04117 IPR001789 Signal transduction response regulator, receiver domain LL3_04117 IPR000792 Transcription regulator LuxR, C-terminal LL3_04118 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_04118 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain LL3_04119 IPR005804 Fatty acid desaturase domain LL3_04120 IPR009057 Homeobox-like domain superfamily LL3_04120 IPR001647 DNA-binding HTH domain, TetR-type LL3_04121 IPR015590 Aldehyde dehydrogenase domain LL3_04121 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent LL3_04121 IPR016162 Aldehyde dehydrogenase, N-terminal LL3_04121 IPR029510 Aldehyde dehydrogenase, glutamic acid active site LL3_04121 IPR016163 Aldehyde dehydrogenase, C-terminal LL3_04121 IPR016160 Aldehyde dehydrogenase, cysteine active site LL3_04121 IPR016161 Aldehyde/histidinol dehydrogenase LL3_04122 IPR002372 Pyrrolo-quinoline quinone repeat LL3_04122 IPR025666 Pyrrolo-quinoline quinone-like domain LL3_04122 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat LL3_04122 IPR015943 WD40/YVTN repeat-like-containing domain superfamily LL3_04122 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily LL3_04124 IPR036390 Winged helix DNA-binding domain superfamily LL3_04124 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_04124 IPR011991 ArsR-like helix-turn-helix domain LL3_04124 IPR001845 HTH ArsR-type DNA-binding domain LL3_04125 IPR036259 MFS transporter superfamily LL3_04125 IPR020846 Major facilitator superfamily domain LL3_04125 IPR011701 Major facilitator superfamily LL3_04126 IPR010432 RDD LL3_04128 IPR024706 Peroxiredoxin, AhpC-type LL3_04128 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant LL3_04128 IPR017559 Alkyl hydroperoxide reductase subunit C LL3_04128 IPR013766 Thioredoxin domain LL3_04128 IPR036249 Thioredoxin-like superfamily LL3_04129 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site LL3_04129 IPR012081 Alkyl hydroperoxide reductase subunit F LL3_04129 IPR036188 FAD/NAD(P)-binding domain superfamily LL3_04129 IPR012336 Thioredoxin-like fold LL3_04129 IPR023753 FAD/NAD(P)-binding domain LL3_04129 IPR002109 Glutaredoxin LL3_04129 IPR036249 Thioredoxin-like superfamily LL3_04131 IPR004840 Amino acid permease, conserved site LL3_04131 IPR004841 Amino acid permease/ SLC12A domain LL3_04135 IPR025296 Domain of unknown function DUF4158 LL3_04135 IPR002513 Tn3 transposase DDE domain LL3_04136 IPR006119 Resolvase, N-terminal catalytic domain LL3_04136 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily LL3_04136 IPR006120 Resolvase, HTH domain LL3_04136 IPR006118 Recombinase, conserved site LL3_04141 IPR014203 Sporulation stage V, protein AC LL3_04141 IPR005562 SpoVA LL3_04142 IPR038369 Stage V sporulation AD superfamily LL3_04142 IPR016039 Thiolase-like LL3_04142 IPR010894 Stage V sporulation AD LL3_04143 IPR005562 SpoVA LL3_04143 IPR014204 Sporulation stage V, protein AE LL3_04144 IPR023090 UPF0702, alpha/beta domain superfamily LL3_04144 IPR007353 Protein of unknown function DUF421 LL3_04146 IPR001736 Phospholipase D/Transphosphatidylase LL3_04146 IPR025202 Phospholipase D-like domain LL3_04146 IPR022924 Cardiolipin synthase LL3_04146 IPR030874 Cardiolipin synthase, Firmicutes-type LL3_04146 IPR027379 Cardiolipin synthase N-terminal LL3_04147 IPR009164 Fructose-1,6-bisphosphatase class 3 LL3_04148 IPR012675 Beta-grasp domain superfamily LL3_04148 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain LL3_04148 IPR036010 2Fe-2S ferredoxin-like superfamily LL3_04148 IPR036884 [2Fe-2S]-binding domain superfamily LL3_04148 IPR002888 [2Fe-2S]-binding LL3_04148 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site LL3_04150 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead LL3_04150 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily LL3_04150 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding LL3_04150 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily LL3_04151 IPR025877 MobA-like NTP transferase LL3_04151 IPR029044 Nucleotide-diphospho-sugar transferases LL3_04151 IPR017615 Xanthine dehydrogenase, accessory protein PucB LL3_04152 IPR027051 XdhC Rossmann domain LL3_04152 IPR003777 XdhC- CoxI LL3_04156 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_04156 IPR000212 DNA helicase, UvrD/REP type LL3_04156 IPR014017 UvrD-like DNA helicase, C-terminal LL3_04156 IPR013986 DExx box DNA helicase domain superfamily LL3_04156 IPR034739 UvrD/AddA helicase, N-terminal LL3_04156 IPR014016 UvrD-like helicase, ATP-binding domain LL3_04158 IPR029028 Alpha/beta knot methyltransferases LL3_04158 IPR003742 RNA methyltransferase RlmH LL3_04158 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal LL3_04159 IPR025626 YyzF-like protein LL3_04161 IPR015943 WD40/YVTN repeat-like-containing domain superfamily LL3_04161 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily LL3_04162 IPR038765 Papain-like cysteine peptidase superfamily LL3_04163 IPR036812 NADP-dependent oxidoreductase domain superfamily LL3_04163 IPR018170 Aldo/keto reductase, conserved site LL3_04163 IPR020471 Aldo/keto reductase LL3_04163 IPR023210 NADP-dependent oxidoreductase domain LL3_04164 IPR000182 GNAT domain LL3_04164 IPR016181 Acyl-CoA N-acyltransferase LL3_04166 IPR013026 Tetratricopeptide repeat-containing domain LL3_04166 IPR040702 Response regulator aspartate phosphatase, N-terminal LL3_04166 IPR011990 Tetratricopeptide-like helical domain superfamily LL3_04166 IPR019734 Tetratricopeptide repeat LL3_04167 IPR020855 Ureohydrolase, manganese-binding site LL3_04167 IPR023696 Ureohydrolase domain superfamily LL3_04167 IPR014033 Arginase LL3_04167 IPR006035 Ureohydrolase LL3_04168 IPR004840 Amino acid permease, conserved site LL3_04168 IPR004841 Amino acid permease/ SLC12A domain LL3_04169 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LL3_04169 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LL3_04169 IPR015424 Pyridoxal phosphate-dependent transferase LL3_04169 IPR010164 Ornithine aminotransferase LL3_04169 IPR005814 Aminotransferase class-III LL3_04169 IPR034757 Ornithine aminotransferase, bacterial type LL3_04170 IPR025962 SdpI/YhfL protein family LL3_04170 IPR012867 Domain of unknown function DUF1648 LL3_04170 IPR026272 Immunity protein SdpI LL3_04171 IPR036390 Winged helix DNA-binding domain superfamily LL3_04171 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_04171 IPR001845 HTH ArsR-type DNA-binding domain LL3_04171 IPR011991 ArsR-like helix-turn-helix domain LL3_04172 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 LL3_04172 IPR002078 RNA polymerase sigma factor 54 interaction domain LL3_04172 IPR035965 PAS domain superfamily LL3_04172 IPR000014 PAS domain LL3_04172 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_04172 IPR002197 DNA binding HTH domain, Fis-type LL3_04172 IPR009057 Homeobox-like domain superfamily LL3_04172 IPR003593 AAA+ ATPase domain LL3_04172 IPR025944 Sigma-54 interaction domain, conserved site LL3_04172 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 LL3_04175 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LL3_04175 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LL3_04175 IPR003660 HAMP domain LL3_04175 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LL3_04175 IPR003594 Histidine kinase/HSP90-like ATPase LL3_04175 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_04175 IPR005467 Histidine kinase domain LL3_04176 IPR039420 Transcriptional regulatory protein WalR-like LL3_04176 IPR001789 Signal transduction response regulator, receiver domain LL3_04176 IPR001867 OmpR/PhoB-type DNA-binding domain LL3_04176 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_04176 IPR011006 CheY-like superfamily LL3_04178 IPR001478 PDZ domain LL3_04178 IPR036034 PDZ superfamily LL3_04178 IPR009003 Peptidase S1, PA clan LL3_04178 IPR001940 Peptidase S1C LL3_04179 IPR001279 Metallo-beta-lactamase LL3_04179 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like LL3_04180 IPR042274 Regulatory protein YycH/YycI , domain 2 LL3_04180 IPR018604 Regulatory protein YycH-like LL3_04181 IPR009996 Regulatory protein YycH LL3_04181 IPR042274 Regulatory protein YycH/YycI , domain 2 LL3_04182 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LL3_04182 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LL3_04182 IPR001610 PAC motif LL3_04182 IPR000014 PAS domain LL3_04182 IPR003594 Histidine kinase/HSP90-like ATPase LL3_04182 IPR035965 PAS domain superfamily LL3_04182 IPR005467 Histidine kinase domain LL3_04182 IPR003660 HAMP domain LL3_04182 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LL3_04182 IPR000700 PAS-associated, C-terminal LL3_04182 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LL3_04183 IPR011006 CheY-like superfamily LL3_04183 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_04183 IPR001867 OmpR/PhoB-type DNA-binding domain LL3_04183 IPR016032 Signal transduction response regulator, C-terminal effector LL3_04183 IPR001789 Signal transduction response regulator, receiver domain LL3_04183 IPR039420 Transcriptional regulatory protein WalR-like LL3_04186 IPR042109 Adenylosuccinate synthetase, domain 1 LL3_04186 IPR042111 Adenylosuccinate synthetase, domain 3 LL3_04186 IPR033128 Adenylosuccinate synthase, active site LL3_04186 IPR001114 Adenylosuccinate synthetase LL3_04186 IPR018220 Adenylosuccinate synthase, GTP-binding site LL3_04186 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_04186 IPR042110 Adenylosuccinate synthetase, domain 2 LL3_04187 IPR037523 Vicinal oxygen chelate (VOC) domain LL3_04187 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain LL3_04187 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase LL3_04189 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal LL3_04189 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_04189 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily LL3_04189 IPR007692 DNA helicase, DnaB type LL3_04189 IPR007694 DNA helicase, DnaB-like, C-terminal LL3_04189 IPR007693 DNA helicase, DnaB-like, N-terminal LL3_04189 IPR003593 AAA+ ATPase domain LL3_04190 IPR018691 Protein of unknown function DUF2188 LL3_04192 IPR025550 YycC-like protein LL3_04197 IPR001296 Glycosyl transferase, family 1 LL3_04197 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain LL3_04200 IPR020070 Ribosomal protein L9, N-terminal LL3_04200 IPR036935 Ribosomal protein L9, N-terminal domain superfamily LL3_04200 IPR020069 Ribosomal protein L9, C-terminal LL3_04200 IPR036791 Ribosomal protein L9, C-terminal domain superfamily LL3_04200 IPR020594 Ribosomal protein L9, bacteria/chloroplast LL3_04200 IPR000244 Ribosomal protein L9 LL3_04200 IPR009027 Ribosomal protein L9/RNase H1, N-terminal LL3_04201 IPR000160 GGDEF domain LL3_04201 IPR001667 DDH domain LL3_04201 IPR038763 DHH phosphoesterase superfamily LL3_04201 IPR003156 DHHA1 domain LL3_04201 IPR014528 Cyclic-di-AMP phosphodiesterase GdpP/PdeA LL3_04202 IPR018710 Protein of unknown function DUF2232 LL3_04204 IPR012851 Spore coat protein CotF-like LL3_04204 IPR016493 Spore coat protein CotF LL3_04205 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_04205 IPR036390 Winged helix DNA-binding domain superfamily LL3_04205 IPR002577 Helix-turn-helix, HxlR type LL3_04206 IPR022934 Manganese-dependent inorganic pyrophosphatase, probable LL3_04206 IPR038222 DHHA2 domain superfamily LL3_04206 IPR001667 DDH domain LL3_04206 IPR038763 DHH phosphoesterase superfamily LL3_04206 IPR004097 DHHA2 domain LL3_04207 IPR000620 EamA domain LL3_04208 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily LL3_04208 IPR003469 Glycoside hydrolase, family 68 LL3_04209 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily LL3_04209 IPR013148 Glycosyl hydrolase family 32, N-terminal LL3_04209 IPR013189 Glycosyl hydrolase family 32, C-terminal LL3_04209 IPR001362 Glycoside hydrolase, family 32 LL3_04209 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily LL3_04210 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_04210 IPR036390 Winged helix DNA-binding domain superfamily LL3_04210 IPR000524 Transcription regulator HTH, GntR LL3_04210 IPR008920 Transcription regulator FadR/GntR, C-terminal LL3_04210 IPR011711 GntR, C-terminal LL3_04211 IPR007837 DNA damage-inducible protein DinB LL3_04211 IPR034660 DinB/YfiT-like putative metalloenzymes LL3_04212 IPR011701 Major facilitator superfamily LL3_04212 IPR036259 MFS transporter superfamily LL3_04215 IPR000415 Nitroreductase-like LL3_04215 IPR029479 Nitroreductase LL3_04216 IPR011991 ArsR-like helix-turn-helix domain LL3_04216 IPR000835 MarR-type HTH domain LL3_04216 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_04216 IPR036390 Winged helix DNA-binding domain superfamily LL3_04216 IPR001845 HTH ArsR-type DNA-binding domain LL3_04217 IPR003740 Uncharacterised membrane protein YitT LL3_04217 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal LL3_04217 IPR019264 Domain of unknown function DUF2179 LL3_04219 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_04219 IPR023187 Transcriptional regulator MarR-type, conserved site LL3_04219 IPR000835 MarR-type HTH domain LL3_04219 IPR036390 Winged helix DNA-binding domain superfamily LL3_04220 IPR039143 Glucosamine 6-phosphate N-acetyltransferase LL3_04220 IPR016181 Acyl-CoA N-acyltransferase LL3_04220 IPR000182 GNAT domain LL3_04221 IPR019913 Pyrimidine utilisation protein RutD LL3_04221 IPR029058 Alpha/Beta hydrolase fold LL3_04221 IPR000073 Alpha/beta hydrolase fold-1 LL3_04227 IPR003675 CAAX prenyl protease 2 LL3_04228 IPR020846 Major facilitator superfamily domain LL3_04228 IPR036259 MFS transporter superfamily LL3_04228 IPR005828 Major facilitator, sugar transporter-like LL3_04229 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase LL3_04229 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain LL3_04229 IPR037523 Vicinal oxygen chelate (VOC) domain LL3_04230 IPR001761 Periplasmic binding protein/LacI sugar binding domain LL3_04230 IPR000843 LacI-type HTH domain LL3_04230 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LL3_04230 IPR028082 Periplasmic binding protein-like I LL3_04231 IPR004808 AP endonuclease 1 LL3_04231 IPR020847 AP endonuclease 1, binding site LL3_04231 IPR020848 AP endonuclease 1, conserved site LL3_04231 IPR036691 Endonuclease/exonuclease/phosphatase superfamily LL3_04231 IPR005135 Endonuclease/exonuclease/phosphatase LL3_04232 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site LL3_04232 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding LL3_04232 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain LL3_04232 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain LL3_04232 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily LL3_04232 IPR036388 Winged helix-like DNA-binding domain superfamily LL3_04233 IPR018060 DNA binding HTH domain, AraC-type LL3_04233 IPR009057 Homeobox-like domain superfamily LL3_04233 IPR004026 Ada DNA repair, metal-binding LL3_04233 IPR018062 HTH domain AraC-type, conserved site LL3_04233 IPR016220 Methylphosphotriester-DNA alkyltransferase, AdaA LL3_04233 IPR035451 Ada-like domain superfamily LL3_04235 IPR012340 Nucleic acid-binding, OB-fold LL3_04235 IPR011344 Single-stranded DNA-binding protein LL3_04235 IPR000424 Primosome PriB/single-strand DNA-binding LL3_04236 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 LL3_04236 IPR035980 Ribosomal protein S6 superfamily LL3_04236 IPR020814 Ribosomal protein S6, plastid/chloroplast LL3_04236 IPR020815 Ribosomal protein S6, conserved site LL3_04236 IPR000529 Ribosomal protein S6 LL3_04237 IPR031167 OBG-type guanine nucleotide-binding (G) domain LL3_04237 IPR006073 GTP binding domain LL3_04237 IPR004095 TGS LL3_04237 IPR041706 YchF, N-terminal LL3_04237 IPR012676 TGS-like LL3_04237 IPR023192 TGS-like domain superfamily LL3_04237 IPR013029 YchF, C-terminal domain LL3_04237 IPR012675 Beta-grasp domain superfamily LL3_04237 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_04237 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 LL3_04238 IPR006656 Molybdopterin oxidoreductase LL3_04238 IPR009010 Aspartate decarboxylase-like domain superfamily LL3_04238 IPR006657 Molybdopterin dinucleotide-binding domain LL3_04238 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain LL3_04239 IPR009296 Protein of unknown function DUF951 LL3_04240 IPR038728 Uncharacterized membrane protein YkvI LL3_04242 IPR009665 Protein of unknown function DUF1256 LL3_04242 IPR023430 Peptidase HybD-like domain superfamily LL3_04243 IPR004437 ParB/RepB/Spo0J partition protein LL3_04243 IPR036086 ParB/Sulfiredoxin superfamily LL3_04243 IPR041468 ParB/Spo0J, HTH domain LL3_04243 IPR003115 ParB/Sulfiredoxin LL3_04244 IPR025669 AAA domain LL3_04244 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_04245 IPR023705 Nucleoid occlusion protein LL3_04245 IPR003115 ParB/Sulfiredoxin LL3_04245 IPR036086 ParB/Sulfiredoxin superfamily LL3_04245 IPR004437 ParB/RepB/Spo0J partition protein LL3_04245 IPR041468 ParB/Spo0J, HTH domain LL3_04246 IPR003682 rRNA small subunit methyltransferase G LL3_04246 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LL3_04247 IPR020595 MnmG-related, conserved site LL3_04247 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related LL3_04247 IPR036188 FAD/NAD(P)-binding domain superfamily LL3_04247 IPR026904 GidA associated domain 3 LL3_04247 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG LL3_04248 IPR031168 TrmE-type guanine nucleotide-binding domain LL3_04248 IPR018948 GTP-binding protein TrmE, N-terminal LL3_04248 IPR006073 GTP binding domain LL3_04248 IPR004520 tRNA modification GTPase MnmE LL3_04248 IPR027368 tRNA modification GTPase MnmE domain 2 LL3_04248 IPR025867 MnmE, helical domain LL3_04248 IPR027417 P-loop containing nucleoside triphosphate hydrolase LL3_04248 IPR005225 Small GTP-binding protein domain LL3_04248 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 LL3_04249 IPR039247 Jag protein LL3_04249 IPR032782 Jag, N-terminal LL3_04249 IPR038247 Jag, N-terminal domain superfamily LL3_04249 IPR004087 K Homology domain LL3_04249 IPR015946 K homology domain-like, alpha/beta LL3_04249 IPR001374 R3H domain LL3_04249 IPR036867 R3H domain superfamily LL3_04249 IPR034079 Jag, R3H domain LL3_04249 IPR038008 Jag, KH domain LL3_04250 IPR028055 Membrane insertase YidC/Oxa1, C-terminal LL3_04250 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 LL3_04250 IPR023060 Membrane insertase YidC/YidC1/YidC2, Firmicutes LL3_04251 IPR020539 Ribonuclease P, conserved site LL3_04251 IPR000100 Ribonuclease P LL3_04251 IPR020568 Ribosomal protein S5 domain 2-type fold LL3_04251 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup LL3_p00005 IPR040702 Response regulator aspartate phosphatase, N-terminal LL3_p00005 IPR013026 Tetratricopeptide repeat-containing domain LL3_p00005 IPR011990 Tetratricopeptide-like helical domain superfamily LL3_p00005 IPR019734 Tetratricopeptide repeat LL3_p00006 IPR000989 Replication protein