locus-tag class description LL3_00001 PF11638 DnaA N-terminal domain LL3_00001 PF08299 Bacterial dnaA protein helix-turn-helix LL3_00001 PF00308 Bacterial dnaA protein LL3_00002 PF02767 DNA polymerase III beta subunit, central domain LL3_00002 PF02768 DNA polymerase III beta subunit, C-terminal domain LL3_00002 PF00712 DNA polymerase III beta subunit, N-terminal domain LL3_00004 PF02463 RecF/RecN/SMC N terminal domain LL3_00005 PF04025 Domain of unknown function (DUF370) LL3_00006 PF00986 DNA gyrase B subunit, carboxyl terminus LL3_00006 PF01751 Toprim domain LL3_00006 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LL3_00006 PF00204 DNA gyrase B LL3_00007 PF03989 DNA gyrase C-terminal domain, beta-propeller LL3_00007 PF00521 DNA gyrase/topoisomerase IV, subunit A LL3_00008 PF14175 YaaC-like Protein LL3_00009 PF00571 CBS domain LL3_00009 PF00478 IMP dehydrogenase / GMP reductase domain LL3_00010 PF00768 D-alanyl-D-alanine carboxypeptidase LL3_00010 PF07943 Penicillin-binding protein 5, C-terminal domain LL3_00011 PF01680 SOR/SNZ family LL3_00012 PF01174 SNO glutamine amidotransferase family LL3_00013 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LL3_00013 PF02403 Seryl-tRNA synthetase N-terminal domain LL3_00014 PF02595 Glycerate kinase family LL3_00015 PF01712 Deoxynucleoside kinase LL3_00016 PF01712 Deoxynucleoside kinase LL3_00017 PF00704 Glycosyl hydrolases family 18 LL3_00017 PF01476 LysM domain LL3_00018 PF00857 Isochorismatase family LL3_00019 PF14437 MafB19-like deaminase LL3_00021 PF12169 DNA polymerase III subunits gamma and tau domain III LL3_00022 PF02575 YbaB/EbfC DNA-binding family LL3_00023 PF13662 Toprim domain LL3_00023 PF02132 RecR protein LL3_00024 PF10704 Protein of unknown function (DUF2508) LL3_00025 PF07441 SigmaK-factor processing regulatory protein BofA LL3_00026 PF10764 Inhibitor of sigma-G Gin LL3_00027 PF10112 5-bromo-4-chloroindolyl phosphate hydrolysis protein LL3_00028 PF05816 Toxic anion resistance protein (TelA) LL3_00029 PF01276 Orn/Lys/Arg decarboxylase, major domain LL3_00029 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LL3_00030 PF02223 Thymidylate kinase LL3_00031 PF06153 Cyclic-di-AMP receptor LL3_00032 PF03885 Protein of unknown function (DUF327) LL3_00033 PF09115 DNA polymerase III, delta subunit, C terminal LL3_00034 PF04468 PSP1 C-terminal conserved region LL3_00035 PF06156 Initiation control protein YabA LL3_00036 PF05175 Methyltransferase small domain LL3_00037 PF01541 GIY-YIG catalytic domain LL3_00038 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LL3_00039 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin LL3_00039 PF18277 AbrB C-terminal domain LL3_00040 PF08264 Anticodon-binding domain of tRNA LL3_00040 PF09334 tRNA synthetases class I (M) LL3_00040 PF01588 Putative tRNA binding domain LL3_00041 PF01026 TatD related DNase LL3_00042 PF06725 3D domain LL3_00042 PF03990 G5-linked-Ubiquitin-like domain LL3_00042 PF07501 G5 domain LL3_00043 PF13331 Domain of unknown function (DUF4093) LL3_00043 PF13662 Toprim domain LL3_00044 PF00398 Ribosomal RNA adenine dimethylase LL3_00045 PF05582 YabG peptidase U57 LL3_00046 PF06257 Biofilm formation stimulator VEG LL3_00047 PF00269 Small, acid-soluble spore proteins, alpha/beta type LL3_00048 PF08544 GHMP kinases C terminal LL3_00048 PF00288 GHMP kinases N terminal domain LL3_00049 PF09182 Bacterial purine repressor, N-terminal LL3_00049 PF00156 Phosphoribosyl transferase domain LL3_00050 PF01042 Endoribonuclease L-PSP LL3_00051 PF04026 SpoVG LL3_00052 PF00132 Bacterial transferase hexapeptide (six repeats) LL3_00052 PF00483 Nucleotidyl transferase LL3_00053 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LL3_00053 PF14572 Phosphoribosyl synthetase-associated domain LL3_00054 PF01386 Ribosomal L25p family LL3_00054 PF14693 Ribosomal protein TL5, C-terminal domain LL3_00055 PF01195 Peptidyl-tRNA hydrolase LL3_00056 PF10955 Protein of unknown function (DUF2757) LL3_00057 PF17757 UvrB interaction domain LL3_00057 PF00270 DEAD/DEAH box helicase LL3_00057 PF00271 Helicase conserved C-terminal domain LL3_00057 PF02559 CarD-like/TRCF domain LL3_00057 PF03461 TRCF domain LL3_00058 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin LL3_00058 PF15714 Stage V sporulation protein T C-terminal, transcription factor LL3_00059 PF01943 Polysaccharide biosynthesis protein LL3_00059 PF14667 Polysaccharide biosynthesis C-terminal domain LL3_00060 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LL3_00060 PF03819 MazG nucleotide pyrophosphohydrolase domain LL3_00061 PF01479 S4 domain LL3_00062 PF07873 YabP family LL3_00063 PF09578 Spore cortex protein YabQ (Spore_YabQ) LL3_00064 PF04977 Septum formation initiator LL3_00065 PF00575 S1 RNA binding domain LL3_00066 PF07228 Stage II sporulation protein E (SpoIIE) LL3_00067 PF00092 von Willebrand factor type A domain LL3_00068 PF00069 Protein kinase domain LL3_00069 PF11734 TilS substrate C-terminal domain LL3_00069 PF09179 TilS substrate binding domain LL3_00069 PF01171 PP-loop family LL3_00071 PF17862 AAA+ lid domain LL3_00071 PF00004 ATPase family associated with various cellular activities (AAA) LL3_00071 PF06480 FtsH Extracellular LL3_00071 PF01434 Peptidase family M41 LL3_00072 PF03309 Type III pantothenate kinase LL3_00073 PF01430 Hsp33 protein LL3_00074 PF13145 PPIC-type PPIASE domain LL3_00075 PF00291 Pyridoxal-phosphate dependent enzyme LL3_00076 PF00425 chorismate binding enzyme LL3_00076 PF04715 Anthranilate synthase component I, N terminal region LL3_00077 PF00117 Glutamine amidotransferase class-I LL3_00078 PF01063 Amino-transferase class IV LL3_00079 PF00809 Pterin binding enzyme LL3_00080 PF02152 Dihydroneopterin aldolase LL3_00081 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LL3_00082 PF01381 Helix-turn-helix LL3_00083 PF01207 Dihydrouridine synthase (Dus) LL3_00084 PF01336 OB-fold nucleic acid binding domain LL3_00084 PF00152 tRNA synthetases class II (D, K and N) LL3_00085 PF17727 CtsR C-terminal dimerization domain LL3_00085 PF05848 CtsR N-terminal HTH domain LL3_00086 PF02151 UvrB/uvrC motif LL3_00087 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain LL3_00088 PF00004 ATPase family associated with various cellular activities (AAA) LL3_00088 PF17871 AAA lid domain LL3_00088 PF07724 AAA domain (Cdc48 subfamily) LL3_00088 PF10431 C-terminal, D2-small domain, of ClpB protein LL3_00088 PF02861 Clp amino terminal domain, pathogenicity island component LL3_00089 PF18073 Rubredoxin metal binding domain LL3_00090 PF10635 DisA bacterial checkpoint controller linker region LL3_00090 PF02457 DisA bacterial checkpoint controller nucleotide-binding LL3_00092 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LL3_00093 PF02542 YgbB family LL3_00094 PF00749 tRNA synthetases class I (E and Q), catalytic domain LL3_00096 PF06426 Serine acetyltransferase, N-terminal LL3_00096 PF00132 Bacterial transferase hexapeptide (six repeats) LL3_00097 PF01406 tRNA synthetases class I (C) catalytic domain LL3_00097 PF09190 DALR domain LL3_00098 PF00636 Ribonuclease III domain LL3_00099 PF08032 RNA 2'-O ribose methyltransferase substrate binding LL3_00099 PF00588 SpoU rRNA Methylase family LL3_00100 PF05991 YacP-like NYN domain LL3_00101 PF04542 Sigma-70 region 2 LL3_00101 PF08281 Sigma-70, region 4 LL3_00102 PF00471 Ribosomal protein L33 LL3_00103 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LL3_00104 PF02357 Transcription termination factor nusG LL3_00104 PF00467 KOW motif LL3_00105 PF03946 Ribosomal protein L11, N-terminal domain LL3_00105 PF00298 Ribosomal protein L11, RNA binding domain LL3_00106 PF00687 Ribosomal protein L1p/L10e family LL3_00107 PF00466 Ribosomal protein L10 LL3_00108 PF16320 Ribosomal protein L7/L12 dimerisation domain LL3_00108 PF00542 Ribosomal protein L7/L12 C-terminal domain LL3_00109 PF05175 Methyltransferase small domain LL3_00110 PF10385 RNA polymerase beta subunit external 1 domain LL3_00110 PF00562 RNA polymerase Rpb2, domain 6 LL3_00110 PF04565 RNA polymerase Rpb2, domain 3 LL3_00110 PF04561 RNA polymerase Rpb2, domain 2 LL3_00110 PF04560 RNA polymerase Rpb2, domain 7 LL3_00110 PF04563 RNA polymerase beta subunit LL3_00111 PF04998 RNA polymerase Rpb1, domain 5 LL3_00111 PF05000 RNA polymerase Rpb1, domain 4 LL3_00111 PF04983 RNA polymerase Rpb1, domain 3 LL3_00111 PF04997 RNA polymerase Rpb1, domain 1 LL3_00111 PF00623 RNA polymerase Rpb1, domain 2 LL3_00112 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family LL3_00113 PF00177 Ribosomal protein S7p/S5e LL3_00114 PF14492 Elongation Factor G, domain II LL3_00114 PF03764 Elongation factor G, domain IV LL3_00114 PF00009 Elongation factor Tu GTP binding domain LL3_00114 PF03144 Elongation factor Tu domain 2 LL3_00114 PF00679 Elongation factor G C-terminus LL3_00115 PF03143 Elongation factor Tu C-terminal domain LL3_00115 PF03144 Elongation factor Tu domain 2 LL3_00115 PF00009 Elongation factor Tu GTP binding domain LL3_00116 PF12146 Serine aminopeptidase, S33 LL3_00118 PF00297 Ribosomal protein L3 LL3_00119 PF00573 Ribosomal protein L4/L1 family LL3_00120 PF00276 Ribosomal protein L23 LL3_00121 PF03947 Ribosomal Proteins L2, C-terminal domain LL3_00121 PF00181 Ribosomal Proteins L2, RNA binding domain LL3_00122 PF00203 Ribosomal protein S19 LL3_00123 PF00189 Ribosomal protein S3, C-terminal domain LL3_00123 PF07650 KH domain LL3_00124 PF00252 Ribosomal protein L16p/L10e LL3_00125 PF00831 Ribosomal L29 protein LL3_00126 PF00366 Ribosomal protein S17 LL3_00127 PF00467 KOW motif LL3_00127 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LL3_00128 PF00281 Ribosomal protein L5 LL3_00128 PF00673 ribosomal L5P family C-terminus LL3_00129 PF00253 Ribosomal protein S14p/S29e LL3_00130 PF00410 Ribosomal protein S8 LL3_00131 PF00347 Ribosomal protein L6 LL3_00132 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LL3_00133 PF00333 Ribosomal protein S5, N-terminal domain LL3_00133 PF03719 Ribosomal protein S5, C-terminal domain LL3_00134 PF00327 Ribosomal protein L30p/L7e LL3_00135 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LL3_00136 PF00344 SecY translocase LL3_00137 PF05191 Adenylate kinase, active site lid LL3_00138 PF00557 Metallopeptidase family M24 LL3_00139 PF00444 Ribosomal protein L36 LL3_00140 PF00416 Ribosomal protein S13/S18 LL3_00141 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LL3_00141 PF01000 RNA polymerase Rpb3/RpoA insert domain LL3_00141 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LL3_00142 PF00005 ABC transporter LL3_00143 PF00005 ABC transporter LL3_00144 PF02361 Cobalt transport protein LL3_00145 PF01416 tRNA pseudouridine synthase LL3_00146 PF00572 Ribosomal protein L13 LL3_00148 PF08241 Methyltransferase domain LL3_00149 PF10730 Protein of unknown function (DUF2521) LL3_00150 PF01520 N-acetylmuramoyl-L-alanine amidase LL3_00151 PF10609 NUBPL iron-transfer P-loop NTPase LL3_00152 PF17898 Spore germination GerD central core domain LL3_00153 PF14089 KinB-signalling pathway activation in sporulation LL3_00154 PF01522 Polysaccharide deacetylase LL3_00156 PF07690 Major Facilitator Superfamily LL3_00159 PF00107 Zinc-binding dehydrogenase LL3_00159 PF08240 Alcohol dehydrogenase GroES-like domain LL3_00161 PF01740 STAS domain LL3_00161 PF00916 Sulfate permease family LL3_00162 PF01758 Sodium Bile acid symporter family LL3_00163 PF00756 Putative esterase LL3_00164 PF01032 FecCD transport family LL3_00165 PF01032 FecCD transport family LL3_00166 PF01497 Periplasmic binding protein LL3_00167 PF01497 Periplasmic binding protein LL3_00167 PF12833 Helix-turn-helix domain LL3_00168 PF07075 Protein of unknown function (DUF1343) LL3_00169 PF01915 Glycosyl hydrolase family 3 C-terminal domain LL3_00169 PF00933 Glycosyl hydrolase family 3 N terminal domain LL3_00170 PF00144 Beta-lactamase LL3_00171 PF00367 phosphotransferase system, EIIB LL3_00171 PF02378 Phosphotransferase system, EIIC LL3_00173 PF01380 SIS domain LL3_00175 PF04463 Protein of unknown function (DUF523) LL3_00176 PF04542 Sigma-70 region 2 LL3_00176 PF08281 Sigma-70, region 4 LL3_00177 PF13490 Putative zinc-finger LL3_00178 PF02457 DisA bacterial checkpoint controller nucleotide-binding LL3_00179 PF07949 YbbR-like protein LL3_00180 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LL3_00180 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LL3_00180 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LL3_00180 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LL3_00183 PF01380 SIS domain LL3_00188 PF16226 Domain of unknown function (DUF4885) LL3_00189 PF00248 Aldo/keto reductase family LL3_00190 PF04172 LrgB-like family LL3_00191 PF03788 LrgA family LL3_00192 PF01047 MarR family LL3_00193 PF00324 Amino acid permease LL3_00194 PF13419 Haloacid dehalogenase-like hydrolase LL3_00195 PF07730 Histidine kinase LL3_00196 PF00072 Response regulator receiver domain LL3_00196 PF00196 Bacterial regulatory proteins, luxR family LL3_00197 PF00005 ABC transporter LL3_00201 PF16219 Domain of unknown function (DUF4879) LL3_00202 PF17334 Minor curli fiber component A LL3_00206 PF13520 Amino acid permease LL3_00207 PF03009 Glycerophosphoryl diester phosphodiesterase family LL3_00208 PF07690 Major Facilitator Superfamily LL3_00210 PF10852 Protein of unknown function (DUF2651) LL3_00211 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal LL3_00211 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal LL3_00215 PF00465 Iron-containing alcohol dehydrogenase LL3_00216 PF02222 ATP-grasp domain LL3_00218 PF01066 CDP-alcohol phosphatidyltransferase LL3_00219 PF09335 SNARE associated Golgi protein LL3_00220 PF02666 Phosphatidylserine decarboxylase LL3_00223 PF00375 Sodium:dicarboxylate symporter family LL3_00225 PF01063 Amino-transferase class IV LL3_00226 PF00324 Amino acid permease LL3_00227 PF02574 Homocysteine S-methyltransferase LL3_00228 PF01235 Sodium:alanine symporter family LL3_00229 PF04960 Glutaminase LL3_00231 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LL3_00232 PF00072 Response regulator receiver domain LL3_00232 PF08664 YcbB domain LL3_00233 PF01636 Phosphotransferase enzyme family LL3_00234 PF15777 Tryptophan RNA-binding attenuator protein inhibitory protein LL3_00237 PF01545 Cation efflux family LL3_00237 PF16916 Dimerisation domain of Zinc Transporter LL3_00238 PF00881 Nitroreductase family LL3_00240 PF07681 DoxX LL3_00241 PF00085 Thioredoxin LL3_00244 PF10710 Protein of unknown function (DUF2512) LL3_00246 PF07486 Cell Wall Hydrolase LL3_00247 PF16655 PhoD-like phosphatase, N-terminal domain LL3_00247 PF09423 PhoD-like phosphatase LL3_00248 PF02416 mttA/Hcf106 family LL3_00249 PF00902 Sec-independent protein translocase protein (TatC) LL3_00250 PF01470 Pyroglutamyl peptidase LL3_00251 PF00266 Aminotransferase class-V LL3_00252 PF07690 Major Facilitator Superfamily LL3_00253 PF00440 Bacterial regulatory proteins, tetR family LL3_00255 PF01674 Lipase (class 2) LL3_00256 PF01674 Lipase (class 2) LL3_00257 PF01674 Lipase (class 2) LL3_00258 PF02810 SEC-C motif LL3_00258 PF05225 helix-turn-helix, Psq domain LL3_00259 PF00248 Aldo/keto reductase family LL3_00260 PF17118 Domain of unknown function (DUF5105) LL3_00260 PF11611 Domain of unknown function (DUF4352) LL3_00261 PF16244 Domain of unknown function (DUF4901) LL3_00262 PF16244 Domain of unknown function (DUF4901) LL3_00263 PF13539 D-alanyl-D-alanine carboxypeptidase LL3_00264 PF18801 response regulator aspartate phosphatase H, N terminal LL3_00266 PF00128 Alpha amylase, catalytic domain LL3_00268 PF10400 Virulence activator alpha C-term LL3_00268 PF03551 Transcriptional regulator PadR-like family LL3_00269 PF01297 Zinc-uptake complex component A periplasmic LL3_00270 PF00005 ABC transporter LL3_00271 PF00950 ABC 3 transport family LL3_00273 PF00296 Luciferase-like monooxygenase LL3_00274 PF02342 TerD domain LL3_00275 PF02342 TerD domain LL3_00276 PF02342 TerD domain LL3_00277 PF03741 Integral membrane protein TerC family LL3_00278 PF14266 Putative component of 'biosynthetic module' LL3_00279 PF05816 Toxic anion resistance protein (TelA) LL3_00280 PF07690 Major Facilitator Superfamily LL3_00281 PF00005 ABC transporter LL3_00281 PF00571 CBS domain LL3_00282 PF00528 Binding-protein-dependent transport system inner membrane component LL3_00283 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LL3_00284 PF07687 Peptidase dimerisation domain LL3_00284 PF01546 Peptidase family M20/M25/M40 LL3_00285 PF03606 C4-dicarboxylate anaerobic carrier LL3_00287 PF06271 RDD family LL3_00288 PF00056 lactate/malate dehydrogenase, NAD binding domain LL3_00288 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LL3_00289 PF07690 Major Facilitator Superfamily LL3_00290 PF01047 MarR family LL3_00291 PF01810 LysE type translocator LL3_00293 PF00324 Amino acid permease LL3_00295 PF02540 NAD synthase LL3_00296 PF01261 Xylose isomerase-like TIM barrel LL3_00297 PF07690 Major Facilitator Superfamily LL3_00298 PF01202 Shikimate kinase LL3_00299 PF05448 Acetyl xylan esterase (AXE1) LL3_00300 PF10127 RNA repair pathway DNA polymerase beta family LL3_00301 PF01619 Proline dehydrogenase LL3_00302 PF00171 Aldehyde dehydrogenase family LL3_00303 PF00474 Sodium:solute symporter family LL3_00304 PF13556 PucR C-terminal helix-turn-helix domain LL3_00304 PF17853 GGDEF-like domain LL3_00305 PF07992 Pyridine nucleotide-disulphide oxidoreductase LL3_00306 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LL3_00307 PF00355 Rieske [2Fe-2S] domain LL3_00308 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LL3_00308 PF04324 BFD-like [2Fe-2S] binding domain LL3_00308 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LL3_00308 PF18267 Rubredoxin NAD+ reductase C-terminal domain LL3_00308 PF07992 Pyridine nucleotide-disulphide oxidoreductase LL3_00309 PF07690 Major Facilitator Superfamily LL3_00310 PF07683 Cobalamin synthesis protein cobW C-terminal domain LL3_00310 PF02492 CobW/HypB/UreG, nucleotide-binding domain LL3_00311 PF00107 Zinc-binding dehydrogenase LL3_00311 PF08240 Alcohol dehydrogenase GroES-like domain LL3_00311 PF13823 Alcohol dehydrogenase GroES-associated LL3_00312 PF06271 RDD family LL3_00313 PF10925 Protein of unknown function (DUF2680) LL3_00314 PF00232 Glycosyl hydrolase family 1 LL3_00315 PF11033 Competence protein J (ComJ) LL3_00316 PF14040 Deoxyribonuclease NucA/NucB LL3_00317 PF01380 SIS domain LL3_00318 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LL3_00319 PF01638 HxlR-like helix-turn-helix LL3_00321 PF00550 Phosphopantetheine attachment site LL3_00321 PF00668 Condensation domain LL3_00321 PF13193 AMP-binding enzyme C-terminal domain LL3_00321 PF00501 AMP-binding enzyme LL3_00322 PF00501 AMP-binding enzyme LL3_00322 PF00550 Phosphopantetheine attachment site LL3_00322 PF13193 AMP-binding enzyme C-terminal domain LL3_00322 PF00668 Condensation domain LL3_00323 PF13193 AMP-binding enzyme C-terminal domain LL3_00323 PF00501 AMP-binding enzyme LL3_00323 PF00975 Thioesterase domain LL3_00323 PF00668 Condensation domain LL3_00323 PF00550 Phosphopantetheine attachment site LL3_00324 PF00975 Thioesterase domain LL3_00327 PF01648 4'-phosphopantetheinyl transferase superfamily LL3_00329 PF00005 ABC transporter LL3_00330 PF00528 Binding-protein-dependent transport system inner membrane component LL3_00331 PF00497 Bacterial extracellular solute-binding proteins, family 3 LL3_00332 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LL3_00332 PF03466 LysR substrate binding domain LL3_00333 PF02441 Flavoprotein LL3_00334 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LL3_00337 PF00854 POT family LL3_00338 PF13229 Right handed beta helix region LL3_00338 PF12708 Pectate lyase superfamily protein LL3_00341 PF03323 Bacillus/Clostridium GerA spore germination protein LL3_00342 PF05504 Spore germination B3/ GerAC like, C-terminal LL3_00343 PF03845 Spore germination protein LL3_00346 PF00497 Bacterial extracellular solute-binding proteins, family 3 LL3_00348 PF00005 ABC transporter LL3_00350 PF03972 MmgE/PrpD family LL3_00351 PF00005 ABC transporter LL3_00352 PF02687 FtsX-like permease family LL3_00352 PF12704 MacB-like periplasmic core domain LL3_00354 PF00486 Transcriptional regulatory protein, C terminal LL3_00354 PF00072 Response regulator receiver domain LL3_00355 PF00672 HAMP domain LL3_00355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LL3_00355 PF00512 His Kinase A (phospho-acceptor) domain LL3_00357 PF18801 response regulator aspartate phosphatase H, N terminal LL3_00358 PF11131 Rap-phr extracellular signalling LL3_00360 PF09680 Family of unknown function LL3_00361 PF13840 ACT domain LL3_00361 PF00696 Amino acid kinase family LL3_00363 PF01032 FecCD transport family LL3_00364 PF01032 FecCD transport family LL3_00365 PF00005 ABC transporter LL3_00366 PF01497 Periplasmic binding protein LL3_00367 PF07690 Major Facilitator Superfamily LL3_00368 PF00440 Bacterial regulatory proteins, tetR family LL3_00369 PF00881 Nitroreductase family LL3_00370 PF03992 Antibiotic biosynthesis monooxygenase LL3_00371 PF01022 Bacterial regulatory protein, arsR family LL3_00372 PF00155 Aminotransferase class I and II LL3_00372 PF00392 Bacterial regulatory proteins, gntR family LL3_00373 PF00202 Aminotransferase class-III LL3_00374 PF00171 Aldehyde dehydrogenase family LL3_00375 PF06800 Sugar transport protein LL3_00377 PF07987 Domain of unkown function (DUF1775) LL3_00378 PF13115 YtkA-like LL3_00378 PF05425 Copper resistance protein D LL3_00378 PF04234 CopC domain LL3_00379 PF05573 NosL LL3_00379 PF08220 DeoR-like helix-turn-helix domain LL3_00382 PF02378 Phosphotransferase system, EIIC LL3_00382 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LL3_00383 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LL3_00384 PF01232 Mannitol dehydrogenase Rossmann domain LL3_00384 PF08125 Mannitol dehydrogenase C-terminal domain LL3_00385 PF07977 FabA-like domain LL3_00388 PF03746 LamB/YcsF family LL3_00389 PF01566 Natural resistance-associated macrophage protein LL3_00390 PF07286 Protein of unknown function (DUF1445) LL3_00391 PF02682 Carboxyltransferase domain, subdomain C and D LL3_00392 PF02626 Carboxyltransferase domain, subdomain A and B LL3_00393 PF09339 IclR helix-turn-helix domain LL3_00393 PF01614 Bacterial transcriptional regulator LL3_00394 PF13472 GDSL-like Lipase/Acylhydrolase family LL3_00395 PF13129 Protein of unknown function (DUF3953) LL3_00396 PF03992 Antibiotic biosynthesis monooxygenase LL3_00397 PF05223 NTF2-like N-terminal transpeptidase domain LL3_00397 PF03717 Penicillin-binding Protein dimerisation domain LL3_00397 PF00905 Penicillin binding protein transpeptidase domain LL3_00398 PF00248 Aldo/keto reductase family LL3_00400 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LL3_00400 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LL3_00400 PF00874 PRD domain LL3_00400 PF05043 Mga helix-turn-helix domain LL3_00400 PF08279 HTH domain LL3_00401 PF00501 AMP-binding enzyme LL3_00401 PF13193 AMP-binding enzyme C-terminal domain LL3_00405 PF13302 Acetyltransferase (GNAT) domain LL3_00406 PF16242 Pyridoxamine 5'-phosphate oxidase like LL3_00407 PF10997 Alternate to MurJ LL3_00408 PF12823 Domain of unknown function (DUF3817) LL3_00409 PF01037 Lrp/AsnC ligand binding domain LL3_00410 PF01131 DNA topoisomerase LL3_00410 PF01751 Toprim domain LL3_00413 PF00990 Diguanylate cyclase, GGDEF domain LL3_00414 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) LL3_00416 PF03170 Bacterial cellulose synthase subunit LL3_00417 PF13520 Amino acid permease LL3_00418 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LL3_00418 PF00205 Thiamine pyrophosphate enzyme, central domain LL3_00418 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LL3_00425 PF18801 response regulator aspartate phosphatase H, N terminal LL3_00425 PF13176 Tetratricopeptide repeat LL3_00428 PF10676 Spore germination protein gerPA/gerPF LL3_00430 PF01566 Natural resistance-associated macrophage protein LL3_00434 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) LL3_00435 PF17314 Family of unknown function (DUF5360) LL3_00436 PF00893 Small Multidrug Resistance protein LL3_00437 PF12787 EcsC protein family LL3_00438 PF00477 Small hydrophilic plant seed protein LL3_00438 PF10685 Stress-induced bacterial acidophilic repeat motif LL3_00439 PF07883 Cupin domain LL3_00440 PF16291 Domain of unknown function (DUF4937 LL3_00441 PF05067 Manganese containing catalase LL3_00442 PF03480 Bacterial extracellular solute-binding protein, family 7 LL3_00443 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LL3_00443 PF17203 Single cache domain 3 LL3_00443 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LL3_00444 PF00072 Response regulator receiver domain LL3_00444 PF08279 HTH domain LL3_00445 PF00375 Sodium:dicarboxylate symporter family LL3_00446 PF01594 AI-2E family transporter LL3_00447 PF00005 ABC transporter LL3_00451 PF13040 Fur-regulated basic protein B LL3_00453 PF16916 Dimerisation domain of Zinc Transporter LL3_00453 PF01545 Cation efflux family LL3_00454 PF00085 Thioredoxin LL3_00455 PF07478 D-ala D-ala ligase C-terminus LL3_00455 PF01820 D-ala D-ala ligase N-terminus LL3_00456 PF01225 Mur ligase family, catalytic domain LL3_00456 PF02875 Mur ligase family, glutamate ligase domain LL3_00456 PF08245 Mur ligase middle domain LL3_00458 PF00270 DEAD/DEAH box helicase LL3_00458 PF00271 Helicase conserved C-terminal domain LL3_00459 PF03703 Bacterial PH domain LL3_00460 PF03703 Bacterial PH domain LL3_00461 PF01694 Rhomboid family LL3_00462 PF01648 4'-phosphopantetheinyl transferase superfamily LL3_00465 PF01168 Alanine racemase, N-terminal domain LL3_00465 PF00842 Alanine racemase, C-terminal domain LL3_00466 PF01402 Ribbon-helix-helix protein, copG family LL3_00467 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system LL3_00468 PF08678 Rsbr N terminal LL3_00468 PF01740 STAS domain LL3_00469 PF01740 STAS domain LL3_00470 PF13581 Histidine kinase-like ATPase domain LL3_00471 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain LL3_00471 PF07228 Stage II sporulation protein E (SpoIIE) LL3_00472 PF01740 STAS domain LL3_00473 PF13581 Histidine kinase-like ATPase domain LL3_00474 PF04542 Sigma-70 region 2 LL3_00474 PF04539 Sigma-70 region 3 LL3_00474 PF04545 Sigma-70, region 4 LL3_00475 PF07228 Stage II sporulation protein E (SpoIIE) LL3_00476 PF17674 HHH domain LL3_00476 PF00575 S1 RNA binding domain LL3_00476 PF16921 Tex protein YqgF-like domain LL3_00476 PF09371 Tex-like protein N-terminal domain LL3_00478 PF10263 SprT-like family LL3_00479 PF07859 alpha/beta hydrolase fold LL3_00480 PF02566 OsmC-like protein LL3_00481 PF01047 MarR family LL3_00485 PF02525 Flavodoxin-like fold LL3_00486 PF00313 'Cold-shock' DNA-binding domain LL3_00490 PF01177 Asp/Glu/Hydantoin racemase LL3_00494 PF00155 Aminotransferase class I and II LL3_00494 PF00392 Bacterial regulatory proteins, gntR family LL3_00495 PF07690 Major Facilitator Superfamily LL3_00496 PF01734 Patatin-like phospholipase LL3_00498 PF08031 Berberine and berberine like LL3_00498 PF01565 FAD binding domain LL3_00501 PF16916 Dimerisation domain of Zinc Transporter LL3_00501 PF01545 Cation efflux family LL3_00503 PF07883 Cupin domain LL3_00504 PF00583 Acetyltransferase (GNAT) family LL3_00505 PF12833 Helix-turn-helix domain LL3_00505 PF06445 GyrI-like small molecule binding domain LL3_00507 PF04055 Radical SAM superfamily LL3_00510 PF00107 Zinc-binding dehydrogenase LL3_00510 PF08240 Alcohol dehydrogenase GroES-like domain LL3_00512 PF13411 MerR HTH family regulatory protein LL3_00515 PF00155 Aminotransferase class I and II LL3_00515 PF00392 Bacterial regulatory proteins, gntR family LL3_00516 PF04299 Putative FMN-binding domain LL3_00517 PF07690 Major Facilitator Superfamily LL3_00518 PF16859 Tetracyclin repressor-like, C-terminal domain LL3_00518 PF00440 Bacterial regulatory proteins, tetR family LL3_00519 PF00892 EamA-like transporter family LL3_00520 PF00392 Bacterial regulatory proteins, gntR family LL3_00520 PF00155 Aminotransferase class I and II LL3_00521 PF07875 Coat F domain LL3_00523 PF08240 Alcohol dehydrogenase GroES-like domain LL3_00523 PF13823 Alcohol dehydrogenase GroES-associated LL3_00523 PF00107 Zinc-binding dehydrogenase LL3_00524 PF07875 Coat F domain LL3_00526 PF03176 MMPL family LL3_00527 PF07722 Peptidase C26 LL3_00529 PF13302 Acetyltransferase (GNAT) domain LL3_00530 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LL3_00530 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LL3_00531 PF00465 Iron-containing alcohol dehydrogenase LL3_00532 PF07690 Major Facilitator Superfamily LL3_00533 PF02801 Beta-ketoacyl synthase, C-terminal domain LL3_00533 PF00109 Beta-ketoacyl synthase, N-terminal domain LL3_00535 PF01925 Sulfite exporter TauE/SafE LL3_00536 PF00583 Acetyltransferase (GNAT) family LL3_00537 PF13411 MerR HTH family regulatory protein LL3_00537 PF06445 GyrI-like small molecule binding domain LL3_00539 PF00293 NUDIX domain LL3_00540 PF00561 alpha/beta hydrolase fold LL3_00541 PF00180 Isocitrate/isopropylmalate dehydrogenase LL3_00542 PF00392 Bacterial regulatory proteins, gntR family LL3_00542 PF07729 FCD domain LL3_00544 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase LL3_00548 PF00144 Beta-lactamase LL3_00548 PF11954 Domain of unknown function (DUF3471) LL3_00551 PF07563 Protein of unknown function (DUF1541) LL3_00552 PF07690 Major Facilitator Superfamily LL3_00553 PF07702 UTRA domain LL3_00553 PF00392 Bacterial regulatory proteins, gntR family LL3_00554 PF07729 FCD domain LL3_00554 PF00392 Bacterial regulatory proteins, gntR family LL3_00555 PF07690 Major Facilitator Superfamily LL3_00556 PF00893 Small Multidrug Resistance protein LL3_00557 PF00893 Small Multidrug Resistance protein LL3_00558 PF17934 Tetracyclin repressor-like, C-terminal domain LL3_00558 PF00440 Bacterial regulatory proteins, tetR family LL3_00559 PF13520 Amino acid permease LL3_00561 PF08327 Activator of Hsp90 ATPase homolog 1-like protein LL3_00562 PF00107 Zinc-binding dehydrogenase LL3_00562 PF08240 Alcohol dehydrogenase GroES-like domain LL3_00563 PF00083 Sugar (and other) transporter LL3_00564 PF00586 AIR synthase related protein, N-terminal domain LL3_00564 PF02769 AIR synthase related protein, C-terminal domain LL3_00565 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LL3_00566 PF00814 Glycoprotease family LL3_00567 PF00583 Acetyltransferase (GNAT) family LL3_00568 PF00814 Glycoprotease family LL3_00569 PF00005 ABC transporter LL3_00569 PF16326 ABC transporter C-terminal domain LL3_00569 PF12848 ABC transporter LL3_00570 PF01967 MoaC family LL3_00571 PF02629 CoA binding domain LL3_00571 PF06971 Putative DNA-binding protein N-terminus LL3_00572 PF02416 mttA/Hcf106 family LL3_00573 PF00902 Sec-independent protein translocase protein (TatC) LL3_00574 PF14146 Domain of unknown function (DUF4305) LL3_00575 PF02517 CPBP intramembrane metalloprotease LL3_00576 PF00166 Chaperonin 10 Kd subunit LL3_00577 PF00118 TCP-1/cpn60 chaperonin family LL3_00581 PF01381 Helix-turn-helix LL3_00586 PF01381 Helix-turn-helix LL3_00587 PF17448 Uncharacterized YqaH-like LL3_00588 PF09466 Hypothetical protein Yqai LL3_00590 PF09588 YqaJ-like viral recombinase domain LL3_00591 PF03837 RecT family LL3_00593 PF07261 Replication initiation and membrane attachment LL3_00594 PF01695 IstB-like ATP binding protein LL3_00599 PF17356 Phage-like element PBSX protein XtrA LL3_00602 PF00145 C-5 cytosine-specific DNA methylase LL3_00605 PF09643 YopX protein LL3_00611 PF08281 Sigma-70, region 4 LL3_00616 PF10668 Phage terminase small subunit LL3_00617 PF04466 Phage terminase large subunit LL3_00617 PF17288 Terminase RNAseH like domain LL3_00639 PF05105 Bacteriophage holin family LL3_00640 PF01510 N-acetylmuramoyl-L-alanine amidase LL3_00640 PF01471 Putative peptidoglycan binding domain LL3_00645 PF08924 Domain of unknown function (DUF1906) LL3_00645 PF01471 Putative peptidoglycan binding domain LL3_00647 PF13176 Tetratricopeptide repeat LL3_00647 PF00931 NB-ARC domain LL3_00649 PF00107 Zinc-binding dehydrogenase LL3_00649 PF08240 Alcohol dehydrogenase GroES-like domain LL3_00651 PF00294 pfkB family carbohydrate kinase LL3_00652 PF14154 Domain of unknown function (DUF4306) LL3_00653 PF04012 PspA/IM30 family LL3_00654 PF08271 TFIIB zinc-binding LL3_00655 PF04536 TPM domain LL3_00656 PF13421 SPFH domain-Band 7 family LL3_00657 PF01757 Acyltransferase family LL3_00659 PF11738 Protein of unknown function (DUF3298) LL3_00659 PF13739 Deacetylase PdaC LL3_00660 PF08281 Sigma-70, region 4 LL3_00660 PF04542 Sigma-70 region 2 LL3_00661 PF00107 Zinc-binding dehydrogenase LL3_00661 PF08240 Alcohol dehydrogenase GroES-like domain LL3_00662 PF03330 Lytic transglycolase LL3_00663 PF07676 WD40-like Beta Propeller Repeat LL3_00665 PF14169 Cold-inducible protein YdjO LL3_00666 PF07732 Multicopper oxidase LL3_00666 PF00394 Multicopper oxidase LL3_00666 PF07731 Multicopper oxidase LL3_00667 PF00324 Amino acid permease LL3_00669 PF16916 Dimerisation domain of Zinc Transporter LL3_00669 PF01545 Cation efflux family LL3_00670 PF07726 ATPase family associated with various cellular activities (AAA) LL3_00670 PF17863 AAA lid domain LL3_00671 PF01882 Protein of unknown function DUF58 LL3_00672 PF01841 Transglutaminase-like superfamily LL3_00672 PF11992 Domain of unknown function (DUF3488) LL3_00672 PF13559 Domain of unknown function (DUF4129) LL3_00674 PF00117 Glutamine amidotransferase class-I LL3_00674 PF00958 GMP synthase C terminal domain LL3_00674 PF02540 NAD synthase LL3_00675 PF04545 Sigma-70, region 4 LL3_00675 PF04542 Sigma-70 region 2 LL3_00677 PF00860 Permease family LL3_00679 PF13076 Fur-regulated basic protein A LL3_00681 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LL3_00682 PF14044 NETI protein LL3_00684 PF00731 AIR carboxylase LL3_00685 PF02222 ATP-grasp domain LL3_00685 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LL3_00686 PF10397 Adenylosuccinate lyase C-terminus LL3_00686 PF00206 Lyase LL3_00687 PF01259 SAICAR synthetase LL3_00688 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase LL3_00690 PF02769 AIR synthase related protein, C-terminal domain LL3_00690 PF00586 AIR synthase related protein, N-terminal domain LL3_00690 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LL3_00691 PF00156 Phosphoribosyl transferase domain LL3_00692 PF00586 AIR synthase related protein, N-terminal domain LL3_00692 PF02769 AIR synthase related protein, C-terminal domain LL3_00693 PF00551 Formyl transferase LL3_00694 PF02142 MGS-like domain LL3_00694 PF01808 AICARFT/IMPCHase bienzyme LL3_00695 PF02844 Phosphoribosylglycinamide synthetase, N domain LL3_00695 PF02843 Phosphoribosylglycinamide synthetase, C domain LL3_00695 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LL3_00696 PF01037 Lrp/AsnC ligand binding domain LL3_00697 PF13520 Amino acid permease LL3_00698 PF11127 Protein of unknown function (DUF2892) LL3_00699 PF01979 Amidohydrolase family LL3_00699 PF13382 Adenine deaminase C-terminal domain LL3_00700 PF17479 Protein of unknown function (DUF3048) C-terminal domain LL3_00700 PF11258 Protein of unknown function (DUF3048) N-terminal domain LL3_00701 PF01371 Trp repressor protein LL3_00702 PF01645 Conserved region in glutamate synthase LL3_00704 PF01884 PcrB family LL3_00705 PF13361 UvrD-like helicase C-terminal domain LL3_00705 PF00580 UvrD/REP helicase N-terminal domain LL3_00706 PF00533 BRCA1 C Terminus (BRCT) domain LL3_00706 PF12826 Helix-hairpin-helix motif LL3_00706 PF01653 NAD-dependent DNA ligase adenylation domain LL3_00706 PF03120 NAD-dependent DNA ligase OB-fold domain LL3_00706 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LL3_00707 PF07537 CamS sex pheromone cAM373 precursor LL3_00708 PF01636 Phosphotransferase enzyme family LL3_00709 PF02308 MgtC family LL3_00710 PF00474 Sodium:solute symporter family LL3_00711 PF02686 Glu-tRNAGln amidotransferase C subunit LL3_00712 PF01425 Amidase LL3_00713 PF02934 GatB/GatE catalytic domain LL3_00713 PF02637 GatB domain LL3_00714 PF00440 Bacterial regulatory proteins, tetR family LL3_00715 PF00873 AcrB/AcrD/AcrF family LL3_00716 PF00781 Diacylglycerol kinase catalytic domain LL3_00717 PF05958 tRNA (Uracil-5-)-methyltransferase LL3_00717 PF01938 TRAM domain LL3_00719 PF00005 ABC transporter LL3_00721 PF04634 Protein of unknown function, DUF600 LL3_00722 PF04634 Protein of unknown function, DUF600 LL3_00723 PF04634 Protein of unknown function, DUF600 LL3_00724 PF04740 LXG domain of WXG superfamily LL3_00725 PF04740 LXG domain of WXG superfamily LL3_00725 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH LL3_00726 PF01709 Transcriptional regulator LL3_00728 PF04439 Streptomycin adenylyltransferase LL3_00729 PF11007 Spore coat associated protein JA (CotJA) LL3_00730 PF12652 CotJB protein LL3_00731 PF05067 Manganese containing catalase LL3_00732 PF00583 Acetyltransferase (GNAT) family LL3_00734 PF04239 Protein of unknown function (DUF421) LL3_00735 PF03992 Antibiotic biosynthesis monooxygenase LL3_00736 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LL3_00739 PF10055 Uncharacterized small protein (DUF2292) LL3_00740 PF01687 Riboflavin kinase LL3_00741 PF01027 Inhibitor of apoptosis-promoting Bax1 LL3_00742 PF01047 MarR family LL3_00743 PF01494 FAD binding domain LL3_00745 PF00067 Cytochrome P450 LL3_00745 PF00258 Flavodoxin LL3_00745 PF00667 FAD binding domain LL3_00745 PF00175 Oxidoreductase NAD-binding domain LL3_00747 PF00884 Sulfatase LL3_00749 PF00483 Nucleotidyl transferase LL3_00750 PF16363 GDP-mannose 4,6 dehydratase LL3_00751 PF03407 Nucleotide-diphospho-sugar transferase LL3_00752 PF00535 Glycosyl transferase family 2 LL3_00753 PF03407 Nucleotide-diphospho-sugar transferase LL3_00754 PF07690 Major Facilitator Superfamily LL3_00755 PF13520 Amino acid permease LL3_00756 PF00171 Aldehyde dehydrogenase family LL3_00757 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LL3_00759 PF00535 Glycosyl transferase family 2 LL3_00759 PF13181 Tetratricopeptide repeat LL3_00760 PF00005 ABC transporter LL3_00760 PF12848 ABC transporter LL3_00760 PF16326 ABC transporter C-terminal domain LL3_00762 PF13411 MerR HTH family regulatory protein LL3_00763 PF07690 Major Facilitator Superfamily LL3_00764 PF00005 ABC transporter LL3_00764 PF12848 ABC transporter LL3_00765 PF00270 DEAD/DEAH box helicase LL3_00765 PF00271 Helicase conserved C-terminal domain LL3_00766 PF00107 Zinc-binding dehydrogenase LL3_00766 PF16884 N-terminal domain of oxidoreductase LL3_00767 PF11486 Protein of unknown function (DUF3212) LL3_00768 PF11181 Heat induced stress protein YflT LL3_00769 PF00544 Pectate lyase LL3_00770 PF00939 Sodium:sulfate symporter transmembrane region LL3_00776 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LL3_00776 PF06580 Histidine kinase LL3_00777 PF04397 LytTr DNA-binding domain LL3_00777 PF00072 Response regulator receiver domain LL3_00779 PF04203 Sortase domain LL3_00781 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LL3_00781 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LL3_00782 PF00072 Response regulator receiver domain LL3_00782 PF12431 Transcriptional regulator LL3_00782 PF08279 HTH domain LL3_00783 PF03401 Tripartite tricarboxylate transporter family receptor LL3_00784 PF03600 Citrate transporter LL3_00785 PF00753 Metallo-beta-lactamase superfamily LL3_00786 PF02898 Nitric oxide synthase, oxygenase domain LL3_00787 PF00708 Acylphosphatase LL3_00788 PF03475 3-alpha domain LL3_00788 PF03473 MOSC domain LL3_00789 PF11121 Protein of unknown function (DUF2639) LL3_00791 PF11588 Protein of unknown function (DUF3243) LL3_00792 PF00557 Metallopeptidase family M24 LL3_00793 PF00367 phosphotransferase system, EIIB LL3_00793 PF02378 Phosphotransferase system, EIIC LL3_00794 PF10787 Uncharacterised protein from bacillus cereus group LL3_00795 PF00884 Sulfatase LL3_00796 PF09350 Domain of unknown function (DUF1992) LL3_00797 PF00011 Hsp20/alpha crystallin family LL3_00798 PF10676 Spore germination protein gerPA/gerPF LL3_00799 PF10676 Spore germination protein gerPA/gerPF LL3_00800 PF02378 Phosphotransferase system, EIIC LL3_00800 PF00367 phosphotransferase system, EIIB LL3_00801 PF16657 Maltogenic Amylase, C-terminal domain LL3_00801 PF00128 Alpha amylase, catalytic domain LL3_00802 PF07702 UTRA domain LL3_00802 PF00392 Bacterial regulatory proteins, gntR family LL3_00803 PF00881 Nitroreductase family LL3_00806 PF02872 5'-nucleotidase, C-terminal domain LL3_00806 PF00149 Calcineurin-like phosphoesterase LL3_00807 PF01965 DJ-1/PfpI family LL3_00808 PF00356 Bacterial regulatory proteins, lacI family LL3_00809 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LL3_00809 PF08501 Shikimate dehydrogenase substrate binding domain LL3_00810 PF01487 Type I 3-dehydroquinase LL3_00811 PF07690 Major Facilitator Superfamily LL3_00812 PF06569 Protein of unknown function (DUF1128) LL3_00813 PF01451 Low molecular weight phosphotyrosine protein phosphatase LL3_00815 PF03631 Virulence factor BrkB LL3_00816 PF07690 Major Facilitator Superfamily LL3_00817 PF01699 Sodium/calcium exchanger protein LL3_00818 PF14167 YfkD-like protein LL3_00819 PF00924 Mechanosensitive ion channel LL3_00820 PF04055 Radical SAM superfamily LL3_00820 PF08756 YfkB-like domain LL3_00822 PF01522 Polysaccharide deacetylase LL3_00823 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LL3_00823 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LL3_00825 PF01544 CorA-like Mg2+ transporter protein LL3_00826 PF00730 HhH-GPD superfamily base excision DNA repair protein LL3_00827 PF01938 TRAM domain LL3_00827 PF05958 tRNA (Uracil-5-)-methyltransferase LL3_00828 PF00082 Subtilase family LL3_00829 PF00005 ABC transporter LL3_00829 PF00664 ABC transporter transmembrane region LL3_00830 PF00069 Protein kinase domain LL3_00834 PF01207 Dihydrouridine synthase (Dus) LL3_00837 PF00676 Dehydrogenase E1 component LL3_00838 PF02779 Transketolase, pyrimidine binding domain LL3_00838 PF02780 Transketolase, C-terminal domain LL3_00839 PF02817 e3 binding domain LL3_00839 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LL3_00839 PF00364 Biotin-requiring enzyme LL3_00840 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LL3_00840 PF07992 Pyridine nucleotide-disulphide oxidoreductase LL3_00841 PF02954 Bacterial regulatory protein, Fis family LL3_00841 PF01590 GAF domain LL3_00841 PF00158 Sigma-54 interaction domain LL3_00842 PF08141 Small acid-soluble spore protein H family LL3_00843 PF02056 Family 4 glycosyl hydrolase LL3_00843 PF11975 Family 4 glycosyl hydrolase C-terminal domain LL3_00844 PF01380 SIS domain LL3_00844 PF01418 Helix-turn-helix domain, rpiR family LL3_00845 PF02378 Phosphotransferase system, EIIC LL3_00845 PF00367 phosphotransferase system, EIIB LL3_00846 PF12708 Pectate lyase superfamily protein LL3_00846 PF11962 Peptidase_G2, IMC autoproteolytic cleavage domain LL3_00847 PF00664 ABC transporter transmembrane region LL3_00847 PF00005 ABC transporter LL3_00848 PF00005 ABC transporter LL3_00848 PF00664 ABC transporter transmembrane region LL3_00849 PF07681 DoxX LL3_00850 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LL3_00852 PF01040 UbiA prenyltransferase family LL3_00853 PF01040 UbiA prenyltransferase family LL3_00854 PF03551 Transcriptional regulator PadR-like family LL3_00854 PF10400 Virulence activator alpha C-term LL3_00855 PF02525 Flavodoxin-like fold LL3_00856 PF01757 Acyltransferase family LL3_00858 PF01337 Barstar (barnase inhibitor) LL3_00859 PF12867 DinB superfamily LL3_00860 PF07690 Major Facilitator Superfamily LL3_00861 PF01047 MarR family LL3_00862 PF09924 Uncharacterised conserved protein (DUF2156) LL3_00862 PF03706 Lysylphosphatidylglycerol synthase TM region LL3_00863 PF02567 Phenazine biosynthesis-like protein LL3_00864 PF00881 Nitroreductase family LL3_00865 PF14151 YfhD-like protein LL3_00866 PF14152 YfhE-like protein LL3_00867 PF08338 Domain of unknown function (DUF1731) LL3_00867 PF01370 NAD dependent epimerase/dehydratase family LL3_00868 PF02631 RecX family LL3_00869 PF08838 Protein of unknown function (DUF1811) LL3_00872 PF10794 Protein of unknown function (DUF2606) LL3_00873 PF00089 Trypsin LL3_00874 PF08176 Small acid-soluble spore protein K family LL3_00875 PF14043 WVELL protein LL3_00876 PF08239 Bacterial SH3 domain LL3_00878 PF13630 SdpI/YhfL protein family LL3_00879 PF00561 alpha/beta hydrolase fold LL3_00881 PF00535 Glycosyl transferase family 2 LL3_00882 PF09586 Bacterial membrane protein YfhO LL3_00883 PF04307 LexA-binding, inner membrane-associated putative hydrolase LL3_00886 PF00589 Phage integrase family LL3_00886 PF14659 Phage integrase, N-terminal SAM-like domain LL3_00894 PF09669 Phage regulatory protein Rha (Phage_pRha) LL3_00894 PF03374 Phage antirepressor protein KilAC domain LL3_00899 PF00772 DnaB-like helicase N terminal domain LL3_00899 PF03796 DnaB-like helicase C terminal domain LL3_00903 PF09397 Ftsk gamma domain LL3_00903 PF01580 FtsK/SpoIIIE family LL3_00903 PF17854 FtsK alpha domain LL3_00910 PF00574 Clp protease LL3_00927 PF10960 BhlA holin family LL3_00928 PF04688 SPP1 phage holin LL3_00929 PF01510 N-acetylmuramoyl-L-alanine amidase LL3_00929 PF01471 Putative peptidoglycan binding domain LL3_00933 PF14815 NUDIX domain LL3_00933 PF00730 HhH-GPD superfamily base excision DNA repair protein LL3_00936 PF04259 Small, acid-soluble spore protein, gamma-type LL3_00937 PF14182 YgaB-like protein LL3_00939 PF04167 Protein of unknown function (DUF402) LL3_00940 PF00664 ABC transporter transmembrane region LL3_00940 PF00005 ABC transporter LL3_00941 PF06081 Aromatic acid exporter family member 1 LL3_00942 PF00202 Aminotransferase class-III LL3_00943 PF00578 AhpC/TSA family LL3_00944 PF01475 Ferric uptake regulator family LL3_00945 PF11023 Zinc-ribbon containing domain LL3_00946 PF14540 Nucleotidyltransferase-like LL3_00946 PF18576 Helix-turn-helix domain LL3_00948 PF03553 Na+/H+ antiporter family LL3_00949 PF03575 Peptidase family S51 LL3_00950 PF13667 ThiC-associated domain LL3_00950 PF01964 Radical SAM ThiC family LL3_00952 PF01565 FAD binding domain LL3_00952 PF08031 Berberine and berberine like LL3_00953 PF13040 Fur-regulated basic protein B LL3_00954 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LL3_00955 PF00528 Binding-protein-dependent transport system inner membrane component LL3_00956 PF12911 N-terminal TM domain of oligopeptide transport permease C LL3_00956 PF00528 Binding-protein-dependent transport system inner membrane component LL3_00957 PF00005 ABC transporter LL3_00957 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LL3_00958 PF00005 ABC transporter LL3_00958 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LL3_00959 PF00199 Catalase LL3_00959 PF06628 Catalase-related immune-responsive LL3_00962 PF00005 ABC transporter LL3_00963 PF09084 NMT1/THI5 like LL3_00964 PF00528 Binding-protein-dependent transport system inner membrane component LL3_00965 PF00296 Luciferase-like monooxygenase LL3_00967 PF00253 Ribosomal protein S14p/S29e LL3_00969 PF01381 Helix-turn-helix LL3_00971 PF08331 Domain of unknown function (DUF1730) LL3_00972 PF12671 Putative amidase domain LL3_00973 PF00588 SpoU rRNA Methylase family LL3_00974 PF13171 Protein of unknown function (DUF4004) LL3_00975 PF04519 Polymer-forming cytoskeletal LL3_00978 PF08298 PrkA AAA domain LL3_00978 PF06798 PrkA serine protein kinase C-terminal domain LL3_00980 PF04285 Protein of unknown function (DUF444) LL3_00981 PF01047 MarR family LL3_00983 PF07690 Major Facilitator Superfamily LL3_00984 PF03358 NADPH-dependent FMN reductase LL3_00987 PF00392 Bacterial regulatory proteins, gntR family LL3_00988 PF00005 ABC transporter LL3_00989 PF00005 ABC transporter LL3_00990 PF12679 ABC-2 family transporter protein LL3_00991 PF00313 'Cold-shock' DNA-binding domain LL3_00992 PF03180 NLPA lipoprotein LL3_00993 PF00990 Diguanylate cyclase, GGDEF domain LL3_00993 PF07694 5TMR of 5TMR-LYT LL3_00994 PF00375 Sodium:dicarboxylate symporter family LL3_00995 PF01546 Peptidase family M20/M25/M40 LL3_00997 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) LL3_00999 PF07875 Coat F domain LL3_01000 PF00149 Calcineurin-like phosphoesterase LL3_01000 PF02872 5'-nucleotidase, C-terminal domain LL3_01000 PF00565 Staphylococcal nuclease homologue LL3_01000 PF00746 LPXTG cell wall anchor motif LL3_01001 PF04203 Sortase domain LL3_01002 PF01479 S4 domain LL3_01002 PF00849 RNA pseudouridylate synthase LL3_01003 PF17326 Family of unknown function (DUF5365) LL3_01004 PF00571 CBS domain LL3_01005 PF13419 Haloacid dehalogenase-like hydrolase LL3_01006 PF00795 Carbon-nitrogen hydrolase LL3_01006 PF00583 Acetyltransferase (GNAT) family LL3_01007 PF00202 Aminotransferase class-III LL3_01008 PF04309 Glycerol-3-phosphate responsive antiterminator LL3_01009 PF00230 Major intrinsic protein LL3_01010 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LL3_01010 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LL3_01011 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LL3_01011 PF01266 FAD dependent oxidoreductase LL3_01012 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LL3_01012 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LL3_01012 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LL3_01012 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LL3_01013 PF13185 GAF domain LL3_01013 PF07730 Histidine kinase LL3_01014 PF00196 Bacterial regulatory proteins, luxR family LL3_01014 PF00072 Response regulator receiver domain LL3_01015 PF03358 NADPH-dependent FMN reductase LL3_01016 PF14148 YhdB-like protein LL3_01017 PF13028 Protein of unknown function (DUF3889) LL3_01018 PF01476 LysM domain LL3_01018 PF00877 NlpC/P60 family LL3_01019 PF02082 Transcriptional regulator LL3_01020 PF05552 Conserved TM helix LL3_01021 PF04293 SpoVR like protein LL3_01022 PF00245 Alkaline phosphatase LL3_01024 PF00877 NlpC/P60 family LL3_01024 PF01476 LysM domain LL3_01025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LL3_01025 PF03466 LysR substrate binding domain LL3_01026 PF00285 Citrate synthase, C-terminal domain LL3_01028 PF13520 Amino acid permease LL3_01029 PF00209 Sodium:neurotransmitter symporter family LL3_01030 PF17453 Sigma-M inhibitor LL3_01031 PF13791 Sigma factor regulator C-terminal LL3_01031 PF13800 Sigma factor regulator N-terminal LL3_01032 PF08281 Sigma-70, region 4 LL3_01032 PF04542 Sigma-70 region 2 LL3_01033 PF01553 Acyltransferase LL3_01034 PF00571 CBS domain LL3_01034 PF03471 Transporter associated domain LL3_01034 PF01595 Cyclin M transmembrane N-terminal domain LL3_01035 PF13411 MerR HTH family regulatory protein LL3_01036 PF00155 Aminotransferase class I and II LL3_01037 PF02801 Beta-ketoacyl synthase, C-terminal domain LL3_01037 PF00109 Beta-ketoacyl synthase, N-terminal domain LL3_01039 PF00571 CBS domain LL3_01039 PF01595 Cyclin M transmembrane N-terminal domain LL3_01039 PF03471 Transporter associated domain LL3_01040 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LL3_01041 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LL3_01042 PF03009 Glycerophosphoryl diester phosphodiesterase family LL3_01044 PF00924 Mechanosensitive ion channel LL3_01045 PF02146 Sir2 family LL3_01046 PF01522 Polysaccharide deacetylase LL3_01047 PF01063 Amino-transferase class IV LL3_01048 PF13977 BetI-type transcriptional repressor, C-terminal LL3_01048 PF00440 Bacterial regulatory proteins, tetR family LL3_01051 PF00582 Universal stress protein family LL3_01054 PF00005 ABC transporter LL3_01054 PF00664 ABC transporter transmembrane region LL3_01055 PF00664 ABC transporter transmembrane region LL3_01055 PF00005 ABC transporter LL3_01056 PF13460 NAD(P)H-binding LL3_01058 PF00269 Small, acid-soluble spore proteins, alpha/beta type LL3_01060 PF17277 Family of unknown function (DUF5342) LL3_01061 PF14398 YheC/D like ATP-grasp LL3_01062 PF14398 YheC/D like ATP-grasp LL3_01064 PF04286 Protein of unknown function (DUF445) LL3_01065 PF06133 Control of competence regulator ComK, YlbF/YmcA LL3_01068 PF04055 Radical SAM superfamily LL3_01069 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) LL3_01070 PF00999 Sodium/hydrogen exchanger family LL3_01071 PF02080 TrkA-C domain LL3_01073 PF00378 Enoyl-CoA hydratase/isomerase LL3_01074 PF14120 YhzD-like protein LL3_01075 PF13732 Domain of unknown function (DUF4162) LL3_01075 PF00005 ABC transporter LL3_01077 PF00149 Calcineurin-like phosphoesterase LL3_01078 PF13514 AAA domain LL3_01079 PF01966 HD domain LL3_01080 PF14147 Sporulation protein YhaL LL3_01084 PF11667 Putative zincin peptidase LL3_01086 PF08963 Protein of unknown function (DUF1878) LL3_01087 PF01047 MarR family LL3_01089 PF12732 YtxH-like protein LL3_01091 PF17099 Tryptophan transporter TrpP LL3_01092 PF00266 Aminotransferase class-V LL3_01093 PF01230 HIT domain LL3_01094 PF00005 ABC transporter LL3_01095 PF05975 Bacterial ABC transporter protein EcsB LL3_01096 PF12787 EcsC protein family LL3_01097 PF07687 Peptidase dimerisation domain LL3_01097 PF01546 Peptidase family M20/M25/M40 LL3_01099 PF03992 Antibiotic biosynthesis monooxygenase LL3_01100 PF00912 Transglycosylase LL3_01100 PF00905 Penicillin binding protein transpeptidase domain LL3_01101 PF01208 Uroporphyrinogen decarboxylase (URO-D) LL3_01104 PF17932 Tetracyclin repressor-like, C-terminal domain LL3_01104 PF00440 Bacterial regulatory proteins, tetR family LL3_01107 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LL3_01107 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LL3_01109 PF05343 M42 glutamyl aminopeptidase LL3_01110 PF00375 Sodium:dicarboxylate symporter family LL3_01112 PF12706 Beta-lactamase superfamily domain LL3_01113 PF10437 Bacterial lipoate protein ligase C-terminus LL3_01113 PF03099 Biotin/lipoate A/B protein ligase family LL3_01114 PF13460 NAD(P)H-binding LL3_01115 PF00501 AMP-binding enzyme LL3_01115 PF13193 AMP-binding enzyme C-terminal domain LL3_01117 PF16491 CAAX prenyl protease N-terminal, five membrane helices LL3_01117 PF01435 Peptidase family M48 LL3_01118 PF05922 Peptidase inhibitor I9 LL3_01118 PF00082 Subtilase family LL3_01119 PF01497 Periplasmic binding protein LL3_01120 PF00300 Histidine phosphatase superfamily (branch 1) LL3_01121 PF00108 Thiolase, N-terminal domain LL3_01121 PF02803 Thiolase, C-terminal domain LL3_01122 PF00501 AMP-binding enzyme LL3_01122 PF13193 AMP-binding enzyme C-terminal domain LL3_01123 PF02632 BioY family LL3_01124 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LL3_01125 PF00355 Rieske [2Fe-2S] domain LL3_01125 PF01266 FAD dependent oxidoreductase LL3_01127 PF08858 IDEAL domain LL3_01128 PF06338 ComK protein LL3_01129 PF08818 Domain of unknown function (DU1801) LL3_01131 PF15493 Domain of unknown function, YrpD LL3_01132 PF05901 Excalibur calcium-binding domain LL3_01133 PF01906 Putative heavy-metal-binding LL3_01134 PF00474 Sodium:solute symporter family LL3_01135 PF11755 Protein of unknown function (DUF3311) LL3_01137 PF09335 SNARE associated Golgi protein LL3_01138 PF10502 Signal peptidase, peptidase S26 LL3_01140 PF01494 FAD binding domain LL3_01141 PF01047 MarR family LL3_01142 PF05145 Transition state regulatory protein AbrB LL3_01143 PF07690 Major Facilitator Superfamily LL3_01144 PF08361 MAATS-type transcriptional repressor, C-terminal region LL3_01144 PF00440 Bacterial regulatory proteins, tetR family LL3_01146 PF02915 Rubrerythrin LL3_01147 PF04239 Protein of unknown function (DUF421) LL3_01148 PF13361 UvrD-like helicase C-terminal domain LL3_01148 PF12705 PD-(D/E)XK nuclease superfamily LL3_01149 PF13361 UvrD-like helicase C-terminal domain LL3_01149 PF00580 UvrD/REP helicase N-terminal domain LL3_01149 PF12705 PD-(D/E)XK nuclease superfamily LL3_01150 PF00149 Calcineurin-like phosphoesterase LL3_01150 PF12320 Type 5 capsule protein repressor C-terminal domain LL3_01151 PF13476 AAA domain LL3_01153 PF10676 Spore germination protein gerPA/gerPF LL3_01154 PF10970 Spore germination protein GerPE LL3_01156 PF10737 Spore germination protein GerPC LL3_01157 PF10803 Spore germination GerPB LL3_01158 PF10676 Spore germination protein gerPA/gerPF LL3_01160 PF09388 Spo0E like sporulation regulatory protein LL3_01162 PF01557 Fumarylacetoacetate (FAA) hydrolase family LL3_01163 PF07457 Protein of unknown function (DUF1516) LL3_01165 PF17936 Bacterial Ig domain LL3_01165 PF00082 Subtilase family LL3_01166 PF10949 Protein of unknown function (DUF2777) LL3_01167 PF00733 Asparagine synthase LL3_01167 PF13537 Glutamine amidotransferase domain LL3_01169 PF01554 MatE LL3_01170 PF12833 Helix-turn-helix domain LL3_01170 PF02311 AraC-like ligand binding domain LL3_01171 PF00356 Bacterial regulatory proteins, lacI family LL3_01173 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LL3_01173 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LL3_01174 PF05163 DinB family LL3_01175 PF01810 LysE type translocator LL3_01176 PF00155 Aminotransferase class I and II LL3_01176 PF00392 Bacterial regulatory proteins, gntR family LL3_01177 PF13599 Pentapeptide repeats (9 copies) LL3_01178 PF13673 Acetyltransferase (GNAT) domain LL3_01179 PF02574 Homocysteine S-methyltransferase LL3_01179 PF02219 Methylenetetrahydrofolate reductase LL3_01181 PF04461 Protein of unknown function (DUF520) LL3_01182 PF17783 CvfB-like winged helix domain LL3_01182 PF13509 S1 domain LL3_01184 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LL3_01184 PF00672 HAMP domain LL3_01184 PF12729 Four helix bundle sensory module for signal transduction LL3_01185 PF00067 Cytochrome P450 LL3_01187 PF02645 Uncharacterised protein, DegV family COG1307 LL3_01188 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LL3_01188 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LL3_01189 PF12690 Intracellular proteinase inhibitor LL3_01190 PF12758 Protein of unknown function (DUF3813) LL3_01193 PF00326 Prolyl oligopeptidase family LL3_01194 PF01883 Iron-sulfur cluster assembly protein LL3_01195 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LL3_01196 PF01565 FAD binding domain LL3_01197 PF07690 Major Facilitator Superfamily LL3_01198 PF01118 Semialdehyde dehydrogenase, NAD binding domain LL3_01198 PF02774 Semialdehyde dehydrogenase, dimerisation domain LL3_01199 PF01960 ArgJ family LL3_01200 PF00696 Amino acid kinase family LL3_01201 PF00202 Aminotransferase class-III LL3_01202 PF00117 Glutamine amidotransferase class-I LL3_01202 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LL3_01203 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LL3_01203 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LL3_01204 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LL3_01204 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LL3_01205 PF14168 YjzC-like protein LL3_01206 PF11151 Protein of unknown function (DUF2929) LL3_01209 PF02608 ABC transporter substrate-binding protein PnrA-like LL3_01210 PF10815 ComZ LL3_01212 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LL3_01212 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LL3_01213 PF00109 Beta-ketoacyl synthase, N-terminal domain LL3_01213 PF02801 Beta-ketoacyl synthase, C-terminal domain LL3_01214 PF10026 Predicted Zn-dependent protease (DUF2268) LL3_01215 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LL3_01215 PF00005 ABC transporter LL3_01216 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LL3_01216 PF00005 ABC transporter LL3_01217 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LL3_01218 PF00528 Binding-protein-dependent transport system inner membrane component LL3_01219 PF12911 N-terminal TM domain of oligopeptide transport permease C LL3_01219 PF00528 Binding-protein-dependent transport system inner membrane component LL3_01220 PF12227 Protein of unknown function (DUF3603) LL3_01221 PF00579 tRNA synthetases class I (W and Y) LL3_01222 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LL3_01223 PF00528 Binding-protein-dependent transport system inner membrane component LL3_01224 PF12911 N-terminal TM domain of oligopeptide transport permease C LL3_01224 PF00528 Binding-protein-dependent transport system inner membrane component LL3_01225 PF00005 ABC transporter LL3_01225 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LL3_01226 PF00005 ABC transporter LL3_01226 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LL3_01228 PF13508 Acetyltransferase (GNAT) domain LL3_01229 PF03960 ArsC family LL3_01230 PF03741 Integral membrane protein TerC family LL3_01231 PF05389 Negative regulator of genetic competence (MecA) LL3_01232 PF06054 Competence protein CoiA-like family LL3_01233 PF08439 Oligopeptidase F LL3_01233 PF01432 Peptidase family M3 LL3_01236 PF01152 Bacterial-like globin LL3_01237 PF01464 Transglycosylase SLT domain LL3_01238 PF01928 CYTH domain LL3_01240 PF04607 Region found in RelA / SpoT proteins LL3_01241 PF01513 ATP-NAD kinase LL3_01242 PF00849 RNA pseudouridylate synthase LL3_01243 PF00149 Calcineurin-like phosphoesterase LL3_01245 PF00999 Sodium/hydrogen exchanger family LL3_01245 PF02080 TrkA-C domain LL3_01245 PF02254 TrkA-N domain LL3_01246 PF03070 TENA/THI-4/PQQC family LL3_01247 PF02581 Thiamine monophosphate synthase LL3_01248 PF01266 FAD dependent oxidoreductase LL3_01249 PF02597 ThiS family LL3_01250 PF05690 Thiazole biosynthesis protein ThiG LL3_01251 PF00899 ThiF family LL3_01252 PF08543 Phosphomethylpyrimidine kinase LL3_01254 PF14153 Spore coat protein CotO LL3_01255 PF10612 Spore coat protein Z LL3_01257 PF10612 Spore coat protein Z LL3_01258 PF07552 Spore Coat Protein X and V domain LL3_01260 PF07552 Spore Coat Protein X and V domain LL3_01261 PF07098 Protein of unknown function (DUF1360) LL3_01265 PF14069 Stage VI sporulation protein F LL3_01266 PF00580 UvrD/REP helicase N-terminal domain LL3_01266 PF13361 UvrD-like helicase C-terminal domain LL3_01268 PF00753 Metallo-beta-lactamase superfamily LL3_01270 PF00005 ABC transporter LL3_01272 PF13673 Acetyltransferase (GNAT) domain LL3_01274 PF00756 Putative esterase LL3_01275 PF01053 Cys/Met metabolism PLP-dependent enzyme LL3_01276 PF01053 Cys/Met metabolism PLP-dependent enzyme LL3_01279 PF14659 Phage integrase, N-terminal SAM-like domain LL3_01279 PF00589 Phage integrase family LL3_01280 PF09346 SMI1 / KNR4 family (SUKH-1) LL3_01285 PF07693 KAP family P-loop domain LL3_01286 PF07693 KAP family P-loop domain LL3_01288 PF08863 YolD-like protein LL3_01298 PF03992 Antibiotic biosynthesis monooxygenase LL3_01299 PF07690 Major Facilitator Superfamily LL3_01300 PF01047 MarR family LL3_01301 PF07745 Glycosyl hydrolase family 53 LL3_01303 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LL3_01303 PF02378 Phosphotransferase system, EIIC LL3_01304 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit LL3_01305 PF00232 Glycosyl hydrolase family 1 LL3_01306 PF08220 DeoR-like helix-turn-helix domain LL3_01306 PF00455 DeoR C terminal sensor domain LL3_01310 PF02308 MgtC family LL3_01311 PF14070 Putative motility protein LL3_01312 PF10990 Protein of unknown function (DUF2809) LL3_01313 PF14172 Domain of unknown function (DUF4309) LL3_01314 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LL3_01314 PF12838 4Fe-4S dicluster domain LL3_01314 PF01568 Molydopterin dinucleotide binding domain LL3_01314 PF00384 Molybdopterin oxidoreductase LL3_01314 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LL3_01315 PF07849 Protein of unknown function (DUF1641) LL3_01316 PF00067 Cytochrome P450 LL3_01317 PF04101 Glycosyltransferase family 28 C-terminal domain LL3_01319 PF02602 Uroporphyrinogen-III synthase HemD LL3_01320 PF03649 Uncharacterised protein family (UPF0014) LL3_01321 PF00005 ABC transporter LL3_01322 PF13536 Putative multidrug resistance efflux transporter LL3_01325 PF07849 Protein of unknown function (DUF1641) LL3_01326 PF07992 Pyridine nucleotide-disulphide oxidoreductase LL3_01327 PF02614 Glucuronate isomerase LL3_01328 PF00356 Bacterial regulatory proteins, lacI family LL3_01330 PF08666 SAF domain LL3_01330 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus LL3_01331 PF00486 Transcriptional regulatory protein, C terminal LL3_01331 PF00072 Response regulator receiver domain LL3_01332 PF00512 His Kinase A (phospho-acceptor) domain LL3_01332 PF00672 HAMP domain LL3_01332 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LL3_01334 PF01925 Sulfite exporter TauE/SafE LL3_01336 PF05163 DinB family LL3_01337 PF18801 response regulator aspartate phosphatase H, N terminal LL3_01339 PF01476 LysM domain LL3_01339 PF01510 N-acetylmuramoyl-L-alanine amidase LL3_01339 PF01471 Putative peptidoglycan binding domain LL3_01340 PF08000 Bacterial PH domain LL3_01341 PF05908 Poly-gamma-glutamate hydrolase LL3_01342 PF06114 IrrE N-terminal-like domain LL3_01344 PF01381 Helix-turn-helix LL3_01347 PF01695 IstB-like ATP binding protein LL3_01351 PF17356 Phage-like element PBSX protein XtrA LL3_01352 PF08281 Sigma-70, region 4 LL3_01353 PF10668 Phage terminase small subunit LL3_01353 PF03592 Terminase small subunit LL3_01354 PF04466 Phage terminase large subunit LL3_01354 PF17288 Terminase RNAseH like domain LL3_01355 PF04860 Phage portal protein LL3_01356 PF14550 Putative phage serine protease XkdF LL3_01357 PF05065 Phage capsid family LL3_01358 PF11436 Protein of unknown function (DUF3199) LL3_01359 PF12206 Domain of unknown function (DUF3599) LL3_01360 PF04883 Bacteriophage HK97-gp10, putative tail-component LL3_01363 PF17481 Phage tail sheath protein beta-sandwich domain LL3_01363 PF04984 Phage tail sheath protein subtilisin-like domain LL3_01363 PF17482 Phage tail sheath C-terminal domain LL3_01364 PF09393 Phage tail tube protein LL3_01365 PF08890 Phage XkdN-like tail assembly chaperone protein, TAC LL3_01367 PF01464 Transglycosylase SLT domain LL3_01367 PF01464 Transglycosylase SLT domain LL3_01367 PF01464 Transglycosylase SLT domain LL3_01368 PF01476 LysM domain LL3_01370 PF10844 Protein of unknown function (DUF2577) LL3_01371 PF10934 Protein of unknown function (DUF2634) LL3_01372 PF04865 Baseplate J-like protein LL3_01373 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) LL3_01376 PF09636 XkdW protein LL3_01377 PF09693 Phage uncharacterised protein (Phage_XkdX) LL3_01379 PF10779 Haemolysin XhlA LL3_01380 PF04688 SPP1 phage holin LL3_01381 PF01510 N-acetylmuramoyl-L-alanine amidase LL3_01381 PF01476 LysM domain LL3_01381 PF01471 Putative peptidoglycan binding domain LL3_01383 PF14185 Antitoxin SpoIISB, type II toxin-antitoxin system LL3_01384 PF14171 Toxin SpoIISA, type II toxin-antitoxin system LL3_01385 PF01384 Phosphate transporter family LL3_01386 PF01865 Protein of unknown function DUF47 LL3_01387 PF13520 Amino acid permease LL3_01388 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LL3_01389 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase LL3_01390 PF00535 Glycosyl transferase family 2 LL3_01392 PF13180 PDZ domain LL3_01393 PF07690 Major Facilitator Superfamily LL3_01394 PF04951 D-aminopeptidase LL3_01395 PF00528 Binding-protein-dependent transport system inner membrane component LL3_01396 PF12911 N-terminal TM domain of oligopeptide transport permease C LL3_01396 PF00528 Binding-protein-dependent transport system inner membrane component LL3_01397 PF00005 ABC transporter LL3_01397 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LL3_01398 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LL3_01399 PF02016 LD-carboxypeptidase N-terminal domain LL3_01399 PF17676 LD-carboxypeptidase C-terminal domain LL3_01400 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LL3_01400 PF13378 Enolase C-terminal domain-like LL3_01401 PF00877 NlpC/P60 family LL3_01402 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LL3_01402 PF00005 ABC transporter LL3_01403 PF10282 Lactonase, 7-bladed beta-propeller LL3_01406 PF03061 Thioesterase superfamily LL3_01407 PF13302 Acetyltransferase (GNAT) domain LL3_01408 PF00893 Small Multidrug Resistance protein LL3_01409 PF00893 Small Multidrug Resistance protein LL3_01410 PF01842 ACT domain LL3_01410 PF00551 Formyl transferase LL3_01411 PF00696 Amino acid kinase family LL3_01411 PF01472 PUA domain LL3_01412 PF00171 Aldehyde dehydrogenase family LL3_01413 PF02566 OsmC-like protein LL3_01414 PF01047 MarR family LL3_01415 PF02566 OsmC-like protein LL3_01418 PF00535 Glycosyl transferase family 2 LL3_01418 PF13181 Tetratricopeptide repeat LL3_01421 PF12832 MFS_1 like family LL3_01422 PF00027 Cyclic nucleotide-binding domain LL3_01423 PF08267 Cobalamin-independent synthase, N-terminal domain LL3_01423 PF01717 Cobalamin-independent synthase, Catalytic domain LL3_01424 PF00082 Subtilase family LL3_01425 PF01740 STAS domain LL3_01426 PF02361 Cobalt transport protein LL3_01427 PF00005 ABC transporter LL3_01428 PF09819 ABC-type cobalt transport system, permease component LL3_01430 PF01476 LysM domain LL3_01430 PF00704 Glycosyl hydrolases family 18 LL3_01431 PF11132 Transcriptional regulator protein (SplA) LL3_01432 PF03448 MgtE intracellular N domain LL3_01432 PF00571 CBS domain LL3_01432 PF01769 Divalent cation transporter LL3_01433 PF13411 MerR HTH family regulatory protein LL3_01437 PF01047 MarR family LL3_01440 PF01068 ATP dependent DNA ligase domain LL3_01441 PF02735 Ku70/Ku80 beta-barrel domain LL3_01442 PF00563 EAL domain LL3_01442 PF00990 Diguanylate cyclase, GGDEF domain LL3_01442 PF03707 Bacterial signalling protein N terminal repeat LL3_01443 PF09335 SNARE associated Golgi protein LL3_01444 PF03741 Integral membrane protein TerC family LL3_01445 PF04542 Sigma-70 region 2 LL3_01446 PF12791 Anti-sigma factor N-terminus LL3_01447 PF00269 Small, acid-soluble spore proteins, alpha/beta type LL3_01448 PF08876 Domain of unknown function (DUF1836) LL3_01449 PF01435 Peptidase family M48 LL3_01450 PF02386 Cation transport protein LL3_01451 PF04239 Protein of unknown function (DUF421) LL3_01453 PF01757 Acyltransferase family LL3_01454 PF00512 His Kinase A (phospho-acceptor) domain LL3_01454 PF13426 PAS domain LL3_01454 PF13188 PAS domain LL3_01454 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LL3_01454 PF00989 PAS fold LL3_01455 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LL3_01455 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LL3_01457 PF01008 Initiation factor 2 subunit family LL3_01458 PF01636 Phosphotransferase enzyme family LL3_01459 PF00795 Carbon-nitrogen hydrolase LL3_01460 PF00155 Aminotransferase class I and II LL3_01461 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain LL3_01461 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain LL3_01463 PF00596 Class II Aldolase and Adducin N-terminal domain LL3_01464 PF03079 ARD/ARD' family LL3_01465 PF09388 Spo0E like sporulation regulatory protein LL3_01466 PF02743 Cache domain LL3_01466 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LL3_01466 PF00512 His Kinase A (phospho-acceptor) domain LL3_01468 PF01047 MarR family LL3_01469 PF13677 Membrane MotB of proton-channel complex MotA/MotB LL3_01469 PF00691 OmpA family LL3_01470 PF01618 MotA/TolQ/ExbB proton channel family LL3_01472 PF10431 C-terminal, D2-small domain, of ClpB protein LL3_01472 PF17871 AAA lid domain LL3_01472 PF07724 AAA domain (Cdc48 subfamily) LL3_01472 PF00004 ATPase family associated with various cellular activities (AAA) LL3_01476 PF06508 Queuosine biosynthesis protein QueC LL3_01477 PF01242 6-pyruvoyl tetrahydropterin synthase LL3_01478 PF04055 Radical SAM superfamily LL3_01479 PF14489 QueF-like protein LL3_01482 PF11514 Protein of unknown function (DUF3219) LL3_01484 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) LL3_01485 PF07486 Cell Wall Hydrolase LL3_01486 PF01943 Polysaccharide biosynthesis protein LL3_01487 PF00578 AhpC/TSA family LL3_01489 PF00557 Metallopeptidase family M24 LL3_01489 PF01321 Creatinase/Prolidase N-terminal domain LL3_01491 PF00356 Bacterial regulatory proteins, lacI family LL3_01491 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LL3_01492 PF03123 CAT RNA binding domain LL3_01492 PF00874 PRD domain LL3_01493 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LL3_01493 PF02378 Phosphotransferase system, EIIC LL3_01493 PF00367 phosphotransferase system, EIIB LL3_01494 PF00381 PTS HPr component phosphorylation site LL3_01495 PF00391 PEP-utilising enzyme, mobile domain LL3_01495 PF05524 PEP-utilising enzyme, N-terminal LL3_01495 PF02896 PEP-utilising enzyme, TIM barrel domain LL3_01496 PF11132 Transcriptional regulator protein (SplA) LL3_01498 PF00672 HAMP domain LL3_01498 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LL3_01498 PF02743 Cache domain LL3_01499 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LL3_01499 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LL3_01500 PF00188 Cysteine-rich secretory protein family LL3_01501 PF00905 Penicillin binding protein transpeptidase domain LL3_01501 PF03717 Penicillin-binding Protein dimerisation domain LL3_01502 PF00512 His Kinase A (phospho-acceptor) domain LL3_01502 PF08447 PAS fold LL3_01502 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LL3_01502 PF00989 PAS fold LL3_01503 PF00155 Aminotransferase class I and II LL3_01506 PF00072 Response regulator receiver domain LL3_01506 PF01584 CheW-like domain LL3_01507 PF14177 YkyB-like protein LL3_01508 PF07690 Major Facilitator Superfamily LL3_01509 PF01476 LysM domain LL3_01509 PF03734 L,D-transpeptidase catalytic domain LL3_01510 PF10518 TAT (twin-arginine translocation) pathway signal sequence LL3_01510 PF00149 Calcineurin-like phosphoesterase LL3_01513 PF10388 EAL-domain associated signalling protein domain LL3_01513 PF00563 EAL domain LL3_01514 PF08796 Protein of unknown function (DUF1797) LL3_01515 PF04308 Ribonuclease H-like LL3_01516 PF14156 Antirepressor AbbA LL3_01518 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LL3_01518 PF03466 LysR substrate binding domain LL3_01519 PF00258 Flavodoxin LL3_01521 PF00258 Flavodoxin LL3_01522 PF00132 Bacterial transferase hexapeptide (six repeats) LL3_01522 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal LL3_01522 PF14602 Hexapeptide repeat of succinyl-transferase LL3_01523 PF07687 Peptidase dimerisation domain LL3_01523 PF01546 Peptidase family M20/M25/M40 LL3_01524 PF03698 Uncharacterised protein family (UPF0180) LL3_01525 PF00924 Mechanosensitive ion channel LL3_01527 PF00578 AhpC/TSA family LL3_01531 PF12804 MobA-like NTP transferase domain LL3_01532 PF00899 ThiF family LL3_01533 PF00994 Probable molybdopterin binding domain LL3_01533 PF03454 MoeA C-terminal region (domain IV) LL3_01533 PF03453 MoeA N-terminal region (domain I and II) LL3_01534 PF03205 Molybdopterin guanine dinucleotide synthesis protein B LL3_01535 PF02391 MoaE protein LL3_01536 PF02597 ThiS family LL3_01538 PF04893 Yip1 domain LL3_01539 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LL3_01540 PF00005 ABC transporter LL3_01541 PF02687 FtsX-like permease family LL3_01541 PF12704 MacB-like periplasmic core domain LL3_01542 PF00455 DeoR C terminal sensor domain LL3_01542 PF08220 DeoR-like helix-turn-helix domain LL3_01543 PF00294 pfkB family carbohydrate kinase LL3_01544 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LL3_01544 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LL3_01545 PF10502 Signal peptidase, peptidase S26 LL3_01547 PF12848 ABC transporter LL3_01547 PF00005 ABC transporter LL3_01548 PF08546 Ketopantoate reductase PanE/ApbA C terminal LL3_01548 PF02558 Ketopantoate reductase PanE/ApbA LL3_01549 PF02073 Thermophilic metalloprotease (M29) LL3_01550 PF17447 Uncharacterized YkpC-like LL3_01552 PF18277 AbrB C-terminal domain LL3_01552 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin LL3_01553 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LL3_01553 PF00512 His Kinase A (phospho-acceptor) domain LL3_01553 PF00989 PAS fold LL3_01554 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like LL3_01555 PF02254 TrkA-N domain LL3_01555 PF02080 TrkA-C domain LL3_01556 PF01979 Amidohydrolase family LL3_01556 PF13382 Adenine deaminase C-terminal domain LL3_01557 PF00753 Metallo-beta-lactamase superfamily LL3_01557 PF17770 Ribonuclease J C-terminal domain LL3_01557 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain LL3_01561 PF01327 Polypeptide deformylase LL3_01563 PF10368 Putative cell-wall binding lipoprotein LL3_01564 PF00676 Dehydrogenase E1 component LL3_01565 PF02779 Transketolase, pyrimidine binding domain LL3_01565 PF02780 Transketolase, C-terminal domain LL3_01566 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LL3_01566 PF00364 Biotin-requiring enzyme LL3_01566 PF02817 e3 binding domain LL3_01567 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LL3_01567 PF07992 Pyridine nucleotide-disulphide oxidoreductase LL3_01569 PF03422 Carbohydrate binding module (family 6) LL3_01569 PF01522 Polysaccharide deacetylase LL3_01569 PF00457 Glycosyl hydrolases family 11 LL3_01570 PF13790 SR1 protein LL3_01571 PF01276 Orn/Lys/Arg decarboxylase, major domain LL3_01571 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LL3_01573 PF05256 Uncharacterised protein family (UPF0223) LL3_01574 PF06335 Protein of unknown function (DUF1054) LL3_01576 PF00459 Inositol monophosphatase family LL3_01577 PF00583 Acetyltransferase (GNAT) family LL3_01578 PF01447 Thermolysin metallopeptidase, catalytic domain LL3_01578 PF03413 Peptidase propeptide and YPEB domain LL3_01578 PF02868 Thermolysin metallopeptidase, alpha-helical domain LL3_01578 PF07504 Fungalysin/Thermolysin Propeptide Motif LL3_01580 PF13490 Putative zinc-finger LL3_01582 PF17259 Family of unknown function (DUF5325) LL3_01584 PF14036 YlaH-like protein LL3_01585 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) LL3_01586 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) LL3_01587 PF02562 PhoH-like protein LL3_01587 PF13638 PIN domain LL3_01589 PF04960 Glutaminase LL3_01608 PF18801 response regulator aspartate phosphatase H, N terminal LL3_01611 PF06605 Prophage endopeptidase tail LL3_01614 PF02899 Phage integrase, N-terminal SAM-like domain LL3_01614 PF00589 Phage integrase family LL3_01638 PF04960 Glutaminase LL3_01639 PF07408 Protein of unknown function (DUF1507) LL3_01640 PF01098 Cell cycle protein LL3_01641 PF00289 Biotin carboxylase, N-terminal domain LL3_01641 PF02785 Biotin carboxylase C-terminal domain LL3_01641 PF00682 HMGL-like LL3_01641 PF00364 Biotin-requiring enzyme LL3_01641 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LL3_01641 PF02436 Conserved carboxylase domain LL3_01642 PF02628 Cytochrome oxidase assembly protein LL3_01643 PF01040 UbiA prenyltransferase family LL3_01645 PF00034 Cytochrome c LL3_01645 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LL3_01645 PF02790 Cytochrome C oxidase subunit II, transmembrane domain LL3_01646 PF00115 Cytochrome C and Quinol oxidase polypeptide I LL3_01647 PF00510 Cytochrome c oxidase subunit III LL3_01648 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LL3_01649 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) LL3_01650 PF08868 YugN-like family LL3_01651 PF00571 CBS domain LL3_01652 PF14504 CAP-associated N-terminal LL3_01652 PF00188 Cysteine-rich secretory protein family LL3_01653 PF14071 Putative coat protein LL3_01654 PF14003 YlbE-like protein LL3_01655 PF06133 Control of competence regulator ComK, YlbF/YmcA LL3_01656 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) LL3_01659 PF01467 Cytidylyltransferase-like LL3_01660 PF07670 Nucleoside recognition LL3_01661 PF01734 Patatin-like phospholipase LL3_01662 PF13180 PDZ domain LL3_01662 PF05362 Lon protease (S16) C-terminal proteolytic domain LL3_01663 PF05636 HIGH Nucleotidyl Transferase LL3_01664 PF02620 Large ribosomal RNA subunit accumulation protein YceD LL3_01665 PF01783 Ribosomal L32p protein family LL3_01667 PF00583 Acetyltransferase (GNAT) family LL3_01668 PF08546 Ketopantoate reductase PanE/ApbA C terminal LL3_01668 PF02558 Ketopantoate reductase PanE/ApbA LL3_01669 PF10079 Bacillithiol biosynthesis BshC LL3_01670 PF02381 MraZ protein, putative antitoxin-like LL3_01671 PF01795 MraW methylase family LL3_01674 PF03717 Penicillin-binding Protein dimerisation domain LL3_01674 PF03793 PASTA domain LL3_01674 PF00905 Penicillin binding protein transpeptidase domain LL3_01675 PF02875 Mur ligase family, glutamate ligase domain LL3_01675 PF08245 Mur ligase middle domain LL3_01675 PF01225 Mur ligase family, catalytic domain LL3_01676 PF00953 Glycosyl transferase family 4 LL3_01676 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LL3_01677 PF02875 Mur ligase family, glutamate ligase domain LL3_01677 PF08245 Mur ligase middle domain LL3_01678 PF01098 Cell cycle protein LL3_01679 PF03033 Glycosyltransferase family 28 N-terminal domain LL3_01679 PF04101 Glycosyltransferase family 28 C-terminal domain LL3_01680 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LL3_01680 PF01565 FAD binding domain LL3_01681 PF08478 POTRA domain, FtsQ-type LL3_01683 PF02491 SHS2 domain inserted in FTSA LL3_01684 PF12327 FtsZ family, C-terminal domain LL3_01684 PF00091 Tubulin/FtsZ family, GTPase domain LL3_01685 PF00082 Subtilase family LL3_01685 PF05922 Peptidase inhibitor I9 LL3_01686 PF03419 Sporulation factor SpoIIGA LL3_01687 PF04545 Sigma-70, region 4 LL3_01687 PF04542 Sigma-70 region 2 LL3_01688 PF04545 Sigma-70, region 4 LL3_01688 PF04539 Sigma-70 region 3 LL3_01688 PF04542 Sigma-70 region 2 LL3_01690 PF00005 ABC transporter LL3_01692 PF01546 Peptidase family M20/M25/M40 LL3_01692 PF07687 Peptidase dimerisation domain LL3_01693 PF05239 PRC-barrel domain LL3_01695 PF01168 Alanine racemase, N-terminal domain LL3_01696 PF04472 Cell division protein SepF LL3_01698 PF01479 S4 domain LL3_01698 PF17774 Putative RNA-binding domain in YlmH LL3_01699 PF05103 DivIVA protein LL3_01700 PF00133 tRNA synthetases class I (I, L, M and V) LL3_01700 PF08264 Anticodon-binding domain of tRNA LL3_01701 PF01258 Prokaryotic dksA/traR C4-type zinc finger LL3_01702 PF01252 Signal peptidase (SPase) II LL3_01703 PF01479 S4 domain LL3_01703 PF00849 RNA pseudouridylate synthase LL3_01704 PF00156 Phosphoribosyl transferase domain LL3_01706 PF00860 Permease family LL3_01707 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LL3_01707 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LL3_01708 PF01979 Amidohydrolase family LL3_01709 PF00117 Glutamine amidotransferase class-I LL3_01709 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LL3_01710 PF02142 MGS-like domain LL3_01710 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LL3_01710 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LL3_01711 PF00175 Oxidoreductase NAD-binding domain LL3_01711 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B LL3_01712 PF01180 Dihydroorotate dehydrogenase LL3_01713 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LL3_01714 PF00156 Phosphoribosyl transferase domain LL3_01716 PF01507 Phosphoadenosine phosphosulfate reductase family LL3_01717 PF01384 Phosphate transporter family LL3_01718 PF01747 ATP-sulfurylase LL3_01718 PF14306 PUA-like domain LL3_01720 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LL3_01721 PF01903 CbiX LL3_01723 PF00128 Alpha amylase, catalytic domain LL3_01723 PF09154 Domain of unknown function (DUF1939) LL3_01725 PF00690 Cation transporter/ATPase, N-terminus LL3_01725 PF00689 Cation transporting ATPase, C-terminus LL3_01726 PF03755 YicC-like family, N-terminal region LL3_01726 PF08340 Domain of unknown function (DUF1732) LL3_01727 PF04025 Domain of unknown function (DUF370) LL3_01728 PF00625 Guanylate kinase LL3_01729 PF01192 RNA polymerase Rpb6 LL3_01730 PF04127 DNA / pantothenate metabolism flavoprotein LL3_01730 PF02441 Flavoprotein LL3_01731 PF18074 Primosomal protein N C-terminal domain LL3_01731 PF17764 3′ DNA-binding domain (3′BD) LL3_01731 PF00271 Helicase conserved C-terminal domain LL3_01731 PF04851 Type III restriction enzyme, res subunit LL3_01731 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LL3_01732 PF01327 Polypeptide deformylase LL3_01733 PF00551 Formyl transferase LL3_01733 PF02911 Formyl transferase, C-terminal domain LL3_01734 PF01189 16S rRNA methyltransferase RsmB/F LL3_01734 PF01029 NusB family LL3_01735 PF04055 Radical SAM superfamily LL3_01737 PF03793 PASTA domain LL3_01737 PF00069 Protein kinase domain LL3_01738 PF03193 RsgA GTPase LL3_01738 PF16745 RsgA N-terminal domain LL3_01739 PF00834 Ribulose-phosphate 3 epimerase family LL3_01740 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain LL3_01740 PF04263 Thiamin pyrophosphokinase, catalytic domain LL3_01741 PF08183 Stage V sporulation protein family LL3_01742 PF00830 Ribosomal L28 family LL3_01743 PF03780 Asp23 family, cell envelope-related function LL3_01744 PF13684 Dihydroxyacetone kinase family LL3_01744 PF02734 DAK2 domain LL3_01745 PF03315 Serine dehydratase beta chain LL3_01745 PF01842 ACT domain LL3_01746 PF03313 Serine dehydratase alpha chain LL3_01747 PF00271 Helicase conserved C-terminal domain LL3_01747 PF17191 RecG wedge domain LL3_01747 PF00270 DEAD/DEAH box helicase LL3_01748 PF03061 Thioesterase superfamily LL3_01749 PF02504 Fatty acid synthesis protein LL3_01750 PF00698 Acyl transferase domain LL3_01752 PF00550 Phosphopantetheine attachment site LL3_01753 PF00035 Double-stranded RNA binding motif LL3_01753 PF14622 Ribonuclease-III-like LL3_01754 PF02463 RecF/RecN/SMC N terminal domain LL3_01754 PF06470 SMC proteins Flexible Hinge Domain LL3_01755 PF02881 SRP54-type protein, helical bundle domain LL3_01755 PF00448 SRP54-type protein, GTPase domain LL3_01756 PF04297 Putative helix-turn-helix protein, YlxM / p13 like LL3_01757 PF02978 Signal peptide binding domain LL3_01757 PF02881 SRP54-type protein, helical bundle domain LL3_01757 PF00448 SRP54-type protein, GTPase domain LL3_01758 PF00886 Ribosomal protein S16 LL3_01760 PF11068 YlqD protein LL3_01761 PF01782 RimM N-terminal domain LL3_01761 PF05239 PRC-barrel domain LL3_01762 PF01746 tRNA (Guanine-1)-methyltransferase LL3_01764 PF01926 50S ribosome-binding GTPase LL3_01765 PF01351 Ribonuclease HII LL3_01767 PF01312 FlhB HrpN YscU SpaS Family LL3_01768 PF08442 ATP-grasp domain LL3_01768 PF00549 CoA-ligase LL3_01769 PF02629 CoA binding domain LL3_01769 PF00549 CoA-ligase LL3_01770 PF02481 DNA recombination-mediator protein A LL3_01771 PF01396 Topoisomerase DNA binding C4 zinc finger LL3_01771 PF01751 Toprim domain LL3_01771 PF01131 DNA topoisomerase LL3_01772 PF01134 Glucose inhibited division protein A LL3_01773 PF02899 Phage integrase, N-terminal SAM-like domain LL3_01773 PF00589 Phage integrase family LL3_01774 PF00227 Proteasome subunit LL3_01775 PF00004 ATPase family associated with various cellular activities (AAA) LL3_01775 PF07724 AAA domain (Cdc48 subfamily) LL3_01775 PF10431 C-terminal, D2-small domain, of ClpB protein LL3_01776 PF06018 CodY GAF-like domain LL3_01776 PF08222 CodY helix-turn-helix domain LL3_01777 PF00460 Flagella basal body rod protein LL3_01778 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LL3_01778 PF00460 Flagella basal body rod protein LL3_01779 PF02049 Flagellar hook-basal body complex protein FliE LL3_01780 PF08345 Flagellar M-ring protein C-terminal LL3_01780 PF01514 Secretory protein of YscJ/FliF family LL3_01781 PF14842 FliG N-terminal domain LL3_01781 PF14841 FliG middle domain LL3_01781 PF01706 FliG C-terminal domain LL3_01782 PF02108 Flagellar assembly protein FliH LL3_01783 PF02874 ATP synthase alpha/beta family, beta-barrel domain LL3_01783 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LL3_01783 PF18269 T3SS EscN ATPase C-terminal domain LL3_01784 PF02050 Flagellar FliJ protein LL3_01785 PF03448 MgtE intracellular N domain LL3_01786 PF02120 Flagellar hook-length control protein FliK LL3_01787 PF03963 Flagellar hook capping protein - N-terminal region LL3_01788 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LL3_01788 PF00460 Flagella basal body rod protein LL3_01789 PF06289 Flagellar and Swarming motility proteins LL3_01790 PF03748 Flagellar basal body-associated protein FliL LL3_01791 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LL3_01791 PF02154 Flagellar motor switch protein FliM LL3_01792 PF04509 CheC-like family LL3_01792 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LL3_01793 PF00072 Response regulator receiver domain LL3_01794 PF04347 Flagellar biosynthesis protein, FliO LL3_01795 PF00813 FliP family LL3_01796 PF01313 Bacterial export proteins, family 3 LL3_01797 PF01311 Bacterial export proteins, family 1 LL3_01798 PF01312 FlhB HrpN YscU SpaS Family LL3_01799 PF00771 FHIPEP family LL3_01800 PF00448 SRP54-type protein, GTPase domain LL3_01801 PF10609 NUBPL iron-transfer P-loop NTPase LL3_01802 PF01339 CheB methylesterase LL3_01802 PF00072 Response regulator receiver domain LL3_01803 PF02895 Signal transducing histidine kinase, homodimeric domain LL3_01803 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LL3_01803 PF01627 Hpt domain LL3_01803 PF07194 P2 response regulator binding domain LL3_01803 PF01584 CheW-like domain LL3_01804 PF01584 CheW-like domain LL3_01805 PF04509 CheC-like family LL3_01806 PF03975 CheD chemotactic sensory transduction LL3_01807 PF04542 Sigma-70 region 2 LL3_01807 PF04539 Sigma-70 region 3 LL3_01807 PF04545 Sigma-70, region 4 LL3_01809 PF00318 Ribosomal protein S2 LL3_01810 PF00889 Elongation factor TS LL3_01811 PF00696 Amino acid kinase family LL3_01812 PF01765 Ribosome recycling factor LL3_01813 PF01255 Putative undecaprenyl diphosphate synthase LL3_01815 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LL3_01815 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LL3_01815 PF13288 DXP reductoisomerase C-terminal domain LL3_01816 PF02163 Peptidase family M50 LL3_01816 PF17820 PDZ domain LL3_01817 PF03129 Anticodon binding domain LL3_01817 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LL3_01817 PF04073 Aminoacyl-tRNA editing domain LL3_01818 PF11490 DNA polymerase III polC-type N-terminus II LL3_01818 PF02811 PHP domain LL3_01818 PF00929 Exonuclease LL3_01818 PF07733 Bacterial DNA polymerase III alpha NTPase domain LL3_01818 PF14579 Helix-hairpin-helix motif LL3_01818 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LL3_01818 PF14480 DNA polymerase III polC-type N-terminus I LL3_01819 PF17384 RimP C-terminal SH3 domain LL3_01819 PF02576 RimP N-terminal domain LL3_01820 PF13184 NusA-like KH domain LL3_01820 PF08529 NusA N-terminal domain LL3_01820 PF00575 S1 RNA binding domain LL3_01821 PF04296 Protein of unknown function (DUF448) LL3_01822 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family LL3_01823 PF04760 Translation initiation factor IF-2, N-terminal region LL3_01823 PF11987 Translation-initiation factor 2 LL3_01823 PF00009 Elongation factor Tu GTP binding domain LL3_01824 PF04456 Protein of unknown function (DUF503) LL3_01825 PF02033 Ribosome-binding factor A LL3_01826 PF16198 tRNA pseudouridylate synthase B C-terminal domain LL3_01826 PF01509 TruB family pseudouridylate synthase (N terminal domain) LL3_01827 PF01687 Riboflavin kinase LL3_01827 PF06574 FAD synthetase LL3_01828 PF01138 3' exoribonuclease family, domain 1 LL3_01828 PF03725 3' exoribonuclease family, domain 2 LL3_01828 PF00575 S1 RNA binding domain LL3_01828 PF00013 KH domain LL3_01828 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LL3_01829 PF01522 Polysaccharide deacetylase LL3_01830 PF05193 Peptidase M16 inactive domain LL3_01830 PF00675 Insulinase (Peptidase family M16) LL3_01831 PF05239 PRC-barrel domain LL3_01832 PF16924 Dipicolinate synthase subunit A N-terminal domain LL3_01832 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LL3_01833 PF02441 Flavoprotein LL3_01834 PF02774 Semialdehyde dehydrogenase, dimerisation domain LL3_01834 PF01118 Semialdehyde dehydrogenase, NAD binding domain LL3_01835 PF13840 ACT domain LL3_01835 PF00696 Amino acid kinase family LL3_01836 PF00701 Dihydrodipicolinate synthetase family LL3_01837 PF00753 Metallo-beta-lactamase superfamily LL3_01837 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain LL3_01837 PF17770 Ribonuclease J C-terminal domain LL3_01838 PF00574 Clp protease LL3_01839 PF14035 YlzJ-like protein LL3_01840 PF17854 FtsK alpha domain LL3_01840 PF01580 FtsK/SpoIIIE family LL3_01840 PF09397 Ftsk gamma domain LL3_01841 PF07702 UTRA domain LL3_01841 PF00392 Bacterial regulatory proteins, gntR family LL3_01842 PF07690 Major Facilitator Superfamily LL3_01843 PF01047 MarR family LL3_01844 PF03176 MMPL family LL3_01845 PF05193 Peptidase M16 inactive domain LL3_01846 PF00675 Insulinase (Peptidase family M16) LL3_01846 PF05193 Peptidase M16 inactive domain LL3_01848 PF11588 Protein of unknown function (DUF3243) LL3_01849 PF11868 Protein of unknown function (DUF3388) LL3_01850 PF13464 Domain of unknown function (DUF4115) LL3_01851 PF01066 CDP-alcohol phosphatidyltransferase LL3_01852 PF02464 Competence-damaged protein LL3_01852 PF18146 Damage-inducible protein CinA KH domain LL3_01852 PF00994 Probable molybdopterin binding domain LL3_01853 PF00154 recA bacterial DNA recombination protein LL3_01854 PF00144 Beta-lactamase LL3_01855 PF01966 HD domain LL3_01855 PF12072 Domain of unknown function (DUF3552) LL3_01855 PF00013 KH domain LL3_01856 PF13277 YmdB-like protein LL3_01857 PF04232 Stage V sporulation protein S (SpoVS) LL3_01858 PF08240 Alcohol dehydrogenase GroES-like domain LL3_01858 PF00107 Zinc-binding dehydrogenase LL3_01859 PF00155 Aminotransferase class I and II LL3_01860 PF04055 Radical SAM superfamily LL3_01860 PF01938 TRAM domain LL3_01860 PF00919 Uncharacterized protein family UPF0004 LL3_01861 PF06133 Control of competence regulator ComK, YlbF/YmcA LL3_01862 PF10628 Outer spore coat protein E (CotE) LL3_01863 PF00488 MutS domain V LL3_01863 PF05192 MutS domain III LL3_01863 PF05188 MutS domain II LL3_01863 PF01624 MutS domain I LL3_01863 PF05190 MutS family domain IV LL3_01864 PF01119 DNA mismatch repair protein, C-terminal domain LL3_01864 PF08676 MutL C terminal dimerisation domain LL3_01865 PF00753 Metallo-beta-lactamase superfamily LL3_01866 PF00698 Acyl transferase domain LL3_01867 PF00698 Acyl transferase domain LL3_01868 PF00698 Acyl transferase domain LL3_01869 PF00550 Phosphopantetheine attachment site LL3_01870 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal LL3_01870 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal LL3_01871 PF00378 Enoyl-CoA hydratase/isomerase LL3_01872 PF00378 Enoyl-CoA hydratase/isomerase LL3_01873 PF00550 Phosphopantetheine attachment site LL3_01873 PF14765 Polyketide synthase dehydratase LL3_01873 PF08659 KR domain LL3_01873 PF02801 Beta-ketoacyl synthase, C-terminal domain LL3_01873 PF00109 Beta-ketoacyl synthase, N-terminal domain LL3_01873 PF00668 Condensation domain LL3_01873 PF13193 AMP-binding enzyme C-terminal domain LL3_01873 PF00501 AMP-binding enzyme LL3_01873 PF16197 Ketoacyl-synthetase C-terminal extension LL3_01874 PF00109 Beta-ketoacyl synthase, N-terminal domain LL3_01874 PF14765 Polyketide synthase dehydratase LL3_01874 PF00550 Phosphopantetheine attachment site LL3_01874 PF08659 KR domain LL3_01874 PF02801 Beta-ketoacyl synthase, C-terminal domain LL3_01874 PF16197 Ketoacyl-synthetase C-terminal extension LL3_01875 PF16197 Ketoacyl-synthetase C-terminal extension LL3_01875 PF14765 Polyketide synthase dehydratase LL3_01875 PF00550 Phosphopantetheine attachment site LL3_01875 PF00109 Beta-ketoacyl synthase, N-terminal domain LL3_01875 PF08242 Methyltransferase domain LL3_01875 PF08659 KR domain LL3_01875 PF02801 Beta-ketoacyl synthase, C-terminal domain LL3_01875 PF02801 Beta-ketoacyl synthase, C-terminal domain LL3_01875 PF00109 Beta-ketoacyl synthase, N-terminal domain LL3_01875 PF08659 KR domain LL3_01875 PF14765 Polyketide synthase dehydratase LL3_01875 PF16197 Ketoacyl-synthetase C-terminal extension LL3_01875 PF08242 Methyltransferase domain LL3_01875 PF00550 Phosphopantetheine attachment site LL3_01876 PF08659 KR domain LL3_01876 PF02801 Beta-ketoacyl synthase, C-terminal domain LL3_01876 PF00109 Beta-ketoacyl synthase, N-terminal domain LL3_01876 PF16197 Ketoacyl-synthetase C-terminal extension LL3_01876 PF00550 Phosphopantetheine attachment site LL3_01876 PF13193 AMP-binding enzyme C-terminal domain LL3_01876 PF00501 AMP-binding enzyme LL3_01876 PF14765 Polyketide synthase dehydratase LL3_01876 PF00668 Condensation domain LL3_01877 PF02801 Beta-ketoacyl synthase, C-terminal domain LL3_01877 PF00109 Beta-ketoacyl synthase, N-terminal domain LL3_01877 PF00975 Thioesterase domain LL3_01877 PF16197 Ketoacyl-synthetase C-terminal extension LL3_01877 PF08242 Methyltransferase domain LL3_01877 PF14765 Polyketide synthase dehydratase LL3_01877 PF00550 Phosphopantetheine attachment site LL3_01878 PF00067 Cytochrome P450 LL3_01879 PF14040 Deoxyribonuclease NucA/NucB LL3_01880 PF06912 Protein of unknown function (DUF1275) LL3_01883 PF00082 Subtilase family LL3_01887 PF05908 Poly-gamma-glutamate hydrolase LL3_01888 PF02566 OsmC-like protein LL3_01889 PF00893 Small Multidrug Resistance protein LL3_01890 PF00893 Small Multidrug Resistance protein LL3_01892 PF12788 YmaF family LL3_01894 PF17209 Hfq protein LL3_01895 PF14157 YmzC-like protein LL3_01897 PF07972 NrdI Flavodoxin like LL3_01898 PF02867 Ribonucleotide reductase, barrel domain LL3_01898 PF08343 Ribonucleotide reductase N-terminal LL3_01898 PF00317 Ribonucleotide reductase, all-alpha domain LL3_01899 PF00268 Ribonucleotide reductase, small chain LL3_01903 PF00004 ATPase family associated with various cellular activities (AAA) LL3_01903 PF17866 AAA lid domain LL3_01904 PF16360 GTP-binding GTPase Middle Region LL3_01904 PF13167 GTP-binding GTPase N-terminal LL3_01904 PF01926 50S ribosome-binding GTPase LL3_01905 PF06838 Methionine gamma-lyase LL3_01906 PF13411 MerR HTH family regulatory protein LL3_01907 PF00120 Glutamine synthetase, catalytic domain LL3_01907 PF03951 Glutamine synthetase, beta-Grasp domain LL3_01914 PF00067 Cytochrome P450 LL3_01917 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain LL3_01917 PF04616 Glycosyl hydrolases family 43 LL3_01918 PF00480 ROK family LL3_01919 PF01261 Xylose isomerase-like TIM barrel LL3_01920 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LL3_01920 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LL3_01921 PF00457 Glycosyl hydrolases family 11 LL3_01922 PF00391 PEP-utilising enzyme, mobile domain LL3_01922 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LL3_01924 PF00107 Zinc-binding dehydrogenase LL3_01924 PF08240 Alcohol dehydrogenase GroES-like domain LL3_01926 PF18801 response regulator aspartate phosphatase H, N terminal LL3_01929 PF05163 DinB family LL3_01930 PF00107 Zinc-binding dehydrogenase LL3_01930 PF08240 Alcohol dehydrogenase GroES-like domain LL3_01934 PF13217 Protein of unknown function (DUF4025) LL3_01935 PF00583 Acetyltransferase (GNAT) family LL3_01935 PF14268 YoaP-like LL3_01938 PF16302 Domain of unknown function (DUF4944) LL3_01940 PF13021 Domain of unknown function (DUF3885) LL3_01943 PF18416 N-acetylglucosamine binding protein domain 2 LL3_01943 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading LL3_01948 PF11962 Peptidase_G2, IMC autoproteolytic cleavage domain LL3_01948 PF12708 Pectate lyase superfamily protein LL3_01949 PF05154 TM2 domain LL3_01950 PF00692 dUTPase LL3_01951 PF13783 Domain of unknown function (DUF4177) LL3_01952 PF05908 Poly-gamma-glutamate hydrolase LL3_01955 PF10710 Protein of unknown function (DUF2512) LL3_01957 PF00717 Peptidase S24-like LL3_01957 PF01726 LexA DNA binding domain LL3_01958 PF01476 LysM domain LL3_01959 PF00239 Resolvase, N terminal domain LL3_01960 PF05979 Bacterial protein of unknown function (DUF896) LL3_01961 PF00456 Transketolase, thiamine diphosphate binding domain LL3_01961 PF02780 Transketolase, C-terminal domain LL3_01961 PF02779 Transketolase, pyrimidine binding domain LL3_01962 PF10747 Sporulation inhibitor of replication protein SirA LL3_01963 PF03672 Uncharacterised protein family (UPF0154) LL3_01964 PF09388 Spo0E like sporulation regulatory protein LL3_01965 PF02683 Cytochrome C biogenesis protein transmembrane region LL3_01966 PF00072 Response regulator receiver domain LL3_01967 PF07301 Protein of unknown function (DUF1453) LL3_01968 PF11084 Protein of unknown function (DUF2621) LL3_01970 PF08179 Small acid-soluble spore protein P family LL3_01972 PF00694 Aconitase C-terminal domain LL3_01972 PF00330 Aconitase family (aconitate hydratase) LL3_01973 PF00578 AhpC/TSA family LL3_01974 PF13040 Fur-regulated basic protein B LL3_01975 PF08177 Small acid-soluble spore protein N family LL3_01977 PF03061 Thioesterase superfamily LL3_01979 PF01521 Iron-sulphur cluster biosynthesis LL3_01980 PF02660 Glycerol-3-phosphate acyltransferase LL3_01981 PF13380 CoA binding domain LL3_01982 PF00204 DNA gyrase B LL3_01982 PF00986 DNA gyrase B subunit, carboxyl terminus LL3_01982 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LL3_01982 PF01751 Toprim domain LL3_01983 PF00521 DNA gyrase/topoisomerase IV, subunit A LL3_01983 PF03989 DNA gyrase C-terminal domain, beta-propeller LL3_01986 PF01235 Sodium:alanine symporter family LL3_01990 PF13761 Domain of unknown function (DUF4166) LL3_01992 PF14158 YndJ-like protein LL3_01995 PF00512 His Kinase A (phospho-acceptor) domain LL3_01995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LL3_01996 PF00486 Transcriptional regulatory protein, C terminal LL3_01996 PF00072 Response regulator receiver domain LL3_01997 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain LL3_01997 PF17189 Glycosyl hydrolase family 30 beta sandwich domain LL3_01998 PF04616 Glycosyl hydrolases family 43 LL3_01998 PF03422 Carbohydrate binding module (family 6) LL3_02000 PF00975 Thioesterase domain LL3_02000 PF00550 Phosphopantetheine attachment site LL3_02000 PF00668 Condensation domain LL3_02000 PF00501 AMP-binding enzyme LL3_02000 PF13193 AMP-binding enzyme C-terminal domain LL3_02001 PF00501 AMP-binding enzyme LL3_02001 PF00550 Phosphopantetheine attachment site LL3_02001 PF00668 Condensation domain LL3_02001 PF13193 AMP-binding enzyme C-terminal domain LL3_02002 PF00109 Beta-ketoacyl synthase, N-terminal domain LL3_02002 PF16197 Ketoacyl-synthetase C-terminal extension LL3_02002 PF00668 Condensation domain LL3_02002 PF13193 AMP-binding enzyme C-terminal domain LL3_02002 PF00202 Aminotransferase class-III LL3_02002 PF02801 Beta-ketoacyl synthase, C-terminal domain LL3_02002 PF00501 AMP-binding enzyme LL3_02002 PF00550 Phosphopantetheine attachment site LL3_02003 PF00698 Acyl transferase domain LL3_02007 PF01144 Coenzyme A transferase LL3_02008 PF01144 Coenzyme A transferase LL3_02009 PF00067 Cytochrome P450 LL3_02010 PF06968 Biotin and Thiamin Synthesis associated domain LL3_02010 PF04055 Radical SAM superfamily LL3_02012 PF00155 Aminotransferase class I and II LL3_02013 PF00202 Aminotransferase class-III LL3_02014 PF03744 6-carboxyhexanoate--CoA ligase LL3_02015 PF04138 GtrA-like protein LL3_02016 PF00483 Nucleotidyl transferase LL3_02017 PF09335 SNARE associated Golgi protein LL3_02018 PF01039 Carboxyl transferase domain LL3_02019 PF00378 Enoyl-CoA hydratase/isomerase LL3_02020 PF00682 HMGL-like LL3_02021 PF00364 Biotin-requiring enzyme LL3_02022 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LL3_02022 PF00289 Biotin carboxylase, N-terminal domain LL3_02022 PF02785 Biotin carboxylase C-terminal domain LL3_02023 PF00501 AMP-binding enzyme LL3_02023 PF13193 AMP-binding enzyme C-terminal domain LL3_02024 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LL3_02024 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LL3_02024 PF02770 Acyl-CoA dehydrogenase, middle domain LL3_02025 PF02638 Glycosyl hydrolase-like 10 LL3_02026 PF07098 Protein of unknown function (DUF1360) LL3_02027 PF13193 AMP-binding enzyme C-terminal domain LL3_02027 PF00668 Condensation domain LL3_02027 PF00501 AMP-binding enzyme LL3_02027 PF00550 Phosphopantetheine attachment site LL3_02027 PF00975 Thioesterase domain LL3_02028 PF13193 AMP-binding enzyme C-terminal domain LL3_02028 PF00550 Phosphopantetheine attachment site LL3_02028 PF00668 Condensation domain LL3_02028 PF00501 AMP-binding enzyme LL3_02030 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family LL3_02031 PF01263 Aldose 1-epimerase LL3_02032 PF01554 MatE LL3_02034 PF16800 IseA DL-endopeptidase inhibitor LL3_02035 PF00589 Phage integrase family LL3_02036 PF12728 Helix-turn-helix domain LL3_02038 PF07690 Major Facilitator Superfamily LL3_02043 PF07992 Pyridine nucleotide-disulphide oxidoreductase LL3_02043 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LL3_02044 PF01645 Conserved region in glutamate synthase LL3_02044 PF01493 GXGXG motif LL3_02044 PF00310 Glutamine amidotransferases class-II LL3_02044 PF04898 Glutamate synthase central domain LL3_02045 PF03466 LysR substrate binding domain LL3_02045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LL3_02046 PF00696 Amino acid kinase family LL3_02046 PF01472 PUA domain LL3_02047 PF14748 Pyrroline-5-carboxylate reductase dimerisation LL3_02047 PF03807 NADP oxidoreductase coenzyme F420-dependent LL3_02048 PF02334 Replication terminator protein LL3_02049 PF00106 short chain dehydrogenase LL3_02050 PF06103 Bacterial protein of unknown function (DUF948) LL3_02052 PF13396 Phospholipase_D-nuclease N-terminal LL3_02052 PF13091 PLD-like domain LL3_02054 PF04239 Protein of unknown function (DUF421) LL3_02055 PF03862 SpoVAC/SpoVAEB sporulation membrane protein LL3_02056 PF07451 Stage V sporulation protein AD (SpoVAD) LL3_02057 PF03862 SpoVAC/SpoVAEB sporulation membrane protein LL3_02062 PF02796 Helix-turn-helix domain of resolvase LL3_02062 PF00239 Resolvase, N terminal domain LL3_02063 PF01526 Tn3 transposase DDE domain LL3_02063 PF13700 Domain of unknown function (DUF4158) LL3_02064 PF07690 Major Facilitator Superfamily LL3_02065 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LL3_02065 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LL3_02066 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LL3_02066 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LL3_02073 PF01588 Putative tRNA binding domain LL3_02074 PF07883 Cupin domain LL3_02074 PF12833 Helix-turn-helix domain LL3_02075 PF00440 Bacterial regulatory proteins, tetR family LL3_02075 PF13305 Tetracyclin repressor-like, C-terminal domain LL3_02076 PF00753 Metallo-beta-lactamase superfamily LL3_02079 PF01022 Bacterial regulatory protein, arsR family LL3_02081 PF04238 Protein of unknown function (DUF420) LL3_02082 PF18846 Bacterial archaeo-eukaryotic release factor family 5 LL3_02085 PF17676 LD-carboxypeptidase C-terminal domain LL3_02085 PF02016 LD-carboxypeptidase N-terminal domain LL3_02088 PF06725 3D domain LL3_02088 PF01476 LysM domain LL3_02090 PF09382 RQC domain LL3_02090 PF00271 Helicase conserved C-terminal domain LL3_02090 PF16124 RecQ zinc-binding LL3_02090 PF00570 HRDC domain LL3_02090 PF00270 DEAD/DEAH box helicase LL3_02092 PF02525 Flavodoxin-like fold LL3_02093 PF01258 Prokaryotic dksA/traR C4-type zinc finger LL3_02096 PF00011 Hsp20/alpha crystallin family LL3_02099 PF08000 Bacterial PH domain LL3_02102 PF00171 Aldehyde dehydrogenase family LL3_02103 PF13249 Squalene-hopene cyclase N-terminal domain LL3_02103 PF13243 Squalene-hopene cyclase C-terminal domain LL3_02104 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LL3_02104 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LL3_02105 PF00209 Sodium:neurotransmitter symporter family LL3_02106 PF01758 Sodium Bile acid symporter family LL3_02107 PF00753 Metallo-beta-lactamase superfamily LL3_02108 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LL3_02108 PF02817 e3 binding domain LL3_02108 PF00364 Biotin-requiring enzyme LL3_02109 PF02779 Transketolase, pyrimidine binding domain LL3_02109 PF00676 Dehydrogenase E1 component LL3_02109 PF16870 2-oxoglutarate dehydrogenase C-terminal LL3_02110 PF00092 von Willebrand factor type A domain LL3_02111 PF07728 AAA domain (dynein-related subfamily) LL3_02112 PF13627 Prokaryotic lipoprotein-attachment site LL3_02112 PF00080 Copper/zinc superoxide dismutase (SODC) LL3_02113 PF01476 LysM domain LL3_02113 PF00877 NlpC/P60 family LL3_02115 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase LL3_02116 PF02457 DisA bacterial checkpoint controller nucleotide-binding LL3_02116 PF10372 Bacterial membrane-spanning protein N-terminus LL3_02118 PF01554 MatE LL3_02119 PF01740 STAS domain LL3_02120 PF02585 GlcNAc-PI de-N-acetylase LL3_02121 PF08830 Protein of unknown function (DUF1806) LL3_02123 PF00892 EamA-like transporter family LL3_02126 PF14552 Tautomerase enzyme LL3_02128 PF01638 HxlR-like helix-turn-helix LL3_02129 PF00881 Nitroreductase family LL3_02130 PF01738 Dienelactone hydrolase family LL3_02131 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LL3_02132 PF11755 Protein of unknown function (DUF3311) LL3_02133 PF00474 Sodium:solute symporter family LL3_02135 PF00232 Glycosyl hydrolase family 1 LL3_02136 PF07702 UTRA domain LL3_02136 PF00392 Bacterial regulatory proteins, gntR family LL3_02137 PF01471 Putative peptidoglycan binding domain LL3_02137 PF17820 PDZ domain LL3_02137 PF03572 Peptidase family S41 LL3_02138 PF08241 Methyltransferase domain LL3_02140 PF02557 D-alanyl-D-alanine carboxypeptidase LL3_02141 PF01048 Phosphorylase superfamily LL3_02143 PF14191 YodL-like LL3_02144 PF01569 PAP2 superfamily LL3_02145 PF14162 YozD-like protein LL3_02148 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LL3_02149 PF06855 YozE SAM-like fold LL3_02150 PF14122 YokU-like protein, putative antitoxin LL3_02151 PF12544 Lysine-2,3-aminomutase LL3_02152 PF00583 Acetyltransferase (GNAT) family LL3_02153 PF07687 Peptidase dimerisation domain LL3_02153 PF01546 Peptidase family M20/M25/M40 LL3_02154 PF01144 Coenzyme A transferase LL3_02155 PF01144 Coenzyme A transferase LL3_02156 PF00202 Aminotransferase class-III LL3_02158 PF06445 GyrI-like small molecule binding domain LL3_02161 PF00583 Acetyltransferase (GNAT) family LL3_02162 PF00535 Glycosyl transferase family 2 LL3_02165 PF12996 DUF based on E. rectale Gene description (DUF3880) LL3_02166 PF02333 Phytase LL3_02167 PF08485 Polysaccharide biosynthesis protein C-terminal LL3_02167 PF02719 Polysaccharide biosynthesis protein LL3_02170 PF01070 FMN-dependent dehydrogenase LL3_02173 PF00239 Resolvase, N terminal domain LL3_02173 PF07508 Recombinase LL3_02174 PF02719 Polysaccharide biosynthesis protein LL3_02175 PF01641 SelR domain LL3_02176 PF01625 Peptide methionine sulfoxide reductase LL3_02177 PF01047 MarR family LL3_02178 PF09911 Uncharacterized protein conserved in bacteria (DUF2140) LL3_02179 PF13472 GDSL-like Lipase/Acylhydrolase family LL3_02180 PF02630 SCO1/SenC LL3_02181 PF10751 Protein of unknown function (DUF2535) LL3_02182 PF00291 Pyridoxal-phosphate dependent enzyme LL3_02182 PF00585 C-terminal regulatory domain of Threonine dehydratase LL3_02183 PF00158 Sigma-54 interaction domain LL3_02183 PF08461 Ribonuclease R winged-helix domain LL3_02184 PF03006 Haemolysin-III related LL3_02186 PF00186 Dihydrofolate reductase LL3_02187 PF00303 Thymidylate synthase LL3_02188 PF14005 YpjP-like protein LL3_02189 PF04445 Putative SAM-dependent methyltransferase LL3_02190 PF06491 Disulphide isomerase LL3_02191 PF00920 Dehydratase family LL3_02192 PF13769 Virulence factor LL3_02192 PF08712 Scaffold protein Nfu/NifU N terminal LL3_02193 PF01966 HD domain LL3_02194 PF00255 Glutathione peroxidase LL3_02196 PF04204 Homoserine O-succinyltransferase LL3_02197 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase LL3_02197 PF00534 Glycosyl transferases group 1 LL3_02198 PF00313 'Cold-shock' DNA-binding domain LL3_02200 PF10819 Protein of unknown function (DUF2564) LL3_02201 PF10782 Zinc-finger LL3_02202 PF13456 Reverse transcriptase-like LL3_02203 PF02592 Putative vitamin uptake transporter LL3_02204 PF13456 Reverse transcriptase-like LL3_02206 PF01367 5'-3' exonuclease, C-terminal SAM fold LL3_02206 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LL3_02208 PF10752 Protein of unknown function (DUF2533) LL3_02209 PF00350 Dynamin family LL3_02212 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family LL3_02213 PF02797 Chalcone and stilbene synthases, C-terminal domain LL3_02213 PF00195 Chalcone and stilbene synthases, N-terminal domain LL3_02218 PF00860 Permease family LL3_02225 PF00149 Calcineurin-like phosphoesterase LL3_02232 PF00186 Dihydrofolate reductase LL3_02233 PF00303 Thymidylate synthase LL3_02239 PF00692 dUTPase LL3_02241 PF00085 Thioredoxin LL3_02243 PF00268 Ribonucleotide reductase, small chain LL3_02246 PF13392 HNH endonuclease LL3_02247 PF08343 Ribonucleotide reductase N-terminal LL3_02247 PF14528 LAGLIDADG-like domain LL3_02247 PF02867 Ribonucleotide reductase, barrel domain LL3_02247 PF00317 Ribonucleotide reductase, all-alpha domain LL3_02261 PF00145 C-5 cytosine-specific DNA methylase LL3_02262 PF01555 DNA methylase LL3_02263 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) LL3_02264 PF02223 Thymidylate kinase LL3_02266 PF09629 YorP protein LL3_02267 PF06725 3D domain LL3_02268 PF14579 Helix-hairpin-helix motif LL3_02268 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LL3_02268 PF07733 Bacterial DNA polymerase III alpha NTPase domain LL3_02268 PF02811 PHP domain LL3_02269 PF17768 RecJ OB domain LL3_02269 PF01368 DHH family LL3_02271 PF03796 DnaB-like helicase C terminal domain LL3_02277 PF13229 Right handed beta helix region LL3_02278 PF05908 Poly-gamma-glutamate hydrolase LL3_02284 PF02586 SOS response associated peptidase (SRAP) LL3_02285 PF01068 ATP dependent DNA ligase domain LL3_02290 PF14037 YoqO-like protein LL3_02301 PF09643 YopX protein LL3_02306 PF13443 Cro/C1-type HTH DNA-binding domain LL3_02308 PF14072 DNA-sulfur modification-associated LL3_02325 PF13443 Cro/C1-type HTH DNA-binding domain LL3_02326 PF01757 Acyltransferase family LL3_02329 PF03374 Phage antirepressor protein KilAC domain LL3_02329 PF09669 Phage regulatory protein Rha (Phage_pRha) LL3_02330 PF00580 UvrD/REP helicase N-terminal domain LL3_02330 PF13361 UvrD-like helicase C-terminal domain LL3_02340 PF00216 Bacterial DNA-binding protein LL3_02341 PF09642 YonK protein LL3_02345 PF03237 Terminase-like family LL3_02365 PF13495 Phage integrase, N-terminal SAM-like domain LL3_02365 PF00589 Phage integrase family LL3_02372 PF05709 Phage tail protein LL3_02373 PF06605 Prophage endopeptidase tail LL3_02375 PF12708 Pectate lyase superfamily protein LL3_02375 PF11962 Peptidase_G2, IMC autoproteolytic cleavage domain LL3_02376 PF01510 N-acetylmuramoyl-L-alanine amidase LL3_02380 PF18801 response regulator aspartate phosphatase H, N terminal LL3_02381 PF11798 IMS family HHH motif LL3_02381 PF00817 impB/mucB/samB family LL3_02381 PF11799 impB/mucB/samB family C-terminal domain LL3_02382 PF01348 Type II intron maturase LL3_02382 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LL3_02383 PF11799 impB/mucB/samB family C-terminal domain LL3_02383 PF11798 IMS family HHH motif LL3_02383 PF00817 impB/mucB/samB family LL3_02384 PF08863 YolD-like protein LL3_02386 PF09560 Sporulation protein YunB (Spo_YunB) LL3_02389 PF04740 LXG domain of WXG superfamily LL3_02389 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH LL3_02390 PF05901 Excalibur calcium-binding domain LL3_02390 PF00565 Staphylococcal nuclease homologue LL3_02392 PF00860 Permease family LL3_02393 PF00156 Phosphoribosyl transferase domain LL3_02394 PF02074 Carboxypeptidase Taq (M32) metallopeptidase LL3_02395 PF13307 Helicase C-terminal domain LL3_02397 PF14139 YpzG-like protein LL3_02399 PF02926 THUMP domain LL3_02399 PF01170 Putative RNA methylase family UPF0020 LL3_02400 PF05103 DivIVA protein LL3_02401 PF06908 YspA SLOG family LL3_02402 PF13482 RNase_H superfamily LL3_02403 PF00270 DEAD/DEAH box helicase LL3_02403 PF09369 Domain of unknown function (DUF1998) LL3_02403 PF00271 Helicase conserved C-terminal domain LL3_02404 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LL3_02406 PF14179 YppG-like protein LL3_02407 PF14178 YppF-like protein LL3_02408 PF08807 Bacterial domain of unknown function (DUF1798) LL3_02411 PF10720 Protein of unknown function (DUF2515) LL3_02412 PF03838 Recombination protein U LL3_02413 PF00912 Transglycosylase LL3_02413 PF00905 Penicillin binding protein transpeptidase domain LL3_02415 PF10576 Iron-sulfur binding domain of endonuclease III LL3_02415 PF00730 HhH-GPD superfamily base excision DNA repair protein LL3_02415 PF00633 Helix-hairpin-helix motif LL3_02416 PF07261 Replication initiation and membrane attachment LL3_02417 PF01336 OB-fold nucleic acid binding domain LL3_02417 PF00152 tRNA synthetases class II (D, K and N) LL3_02418 PF00155 Aminotransferase class I and II LL3_02419 PF03413 Peptidase propeptide and YPEB domain LL3_02419 PF17881 Domain of unknown function (DUF5590) LL3_02420 PF14084 Protein of unknown function (DUF4264) LL3_02422 PF04851 Type III restriction enzyme, res subunit LL3_02422 PF13307 Helicase C-terminal domain LL3_02422 PF00929 Exonuclease LL3_02424 PF02261 Aspartate decarboxylase LL3_02425 PF02569 Pantoate-beta-alanine ligase LL3_02426 PF02548 Ketopantoate hydroxymethyltransferase LL3_02427 PF08279 HTH domain LL3_02427 PF03099 Biotin/lipoate A/B protein ligase family LL3_02427 PF02237 Biotin protein ligase C terminal domain LL3_02428 PF01743 Poly A polymerase head domain LL3_02428 PF13735 tRNA nucleotidyltransferase domain 2 putative LL3_02428 PF12627 Probable RNA and SrmB- binding site of polymerase A LL3_02429 PF13439 Glycosyltransferase Family 4 LL3_02429 PF00534 Glycosyl transferases group 1 LL3_02430 PF02585 GlcNAc-PI de-N-acetylase LL3_02431 PF02142 MGS-like domain LL3_02432 PF01113 Dihydrodipicolinate reductase, N-terminus LL3_02432 PF05173 Dihydrodipicolinate reductase, C-terminus LL3_02433 PF03819 MazG nucleotide pyrophosphohydrolase domain LL3_02434 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LL3_02434 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LL3_02435 PF00190 Cupin LL3_02436 PF09577 Sporulation protein YpjB (SpoYpjB) LL3_02437 PF07187 Protein of unknown function (DUF1405) LL3_02438 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LL3_02438 PF00032 Cytochrome b(C-terminal)/b6/petD LL3_02439 PF00033 Cytochrome b/b6/petB LL3_02440 PF00355 Rieske [2Fe-2S] domain LL3_02442 PF08858 IDEAL domain LL3_02442 PF08864 UPF0302 domain LL3_02445 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LL3_02446 PF02153 Prephenate dehydrogenase LL3_02446 PF01842 ACT domain LL3_02447 PF00155 Aminotransferase class I and II LL3_02448 PF00290 Tryptophan synthase alpha chain LL3_02449 PF00291 Pyridoxal-phosphate dependent enzyme LL3_02450 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LL3_02451 PF00218 Indole-3-glycerol phosphate synthase LL3_02452 PF00591 Glycosyl transferase family, a/b domain LL3_02452 PF02885 Glycosyl transferase family, helical bundle domain LL3_02453 PF04715 Anthranilate synthase component I, N terminal region LL3_02453 PF00425 chorismate binding enzyme LL3_02454 PF07736 Chorismate mutase type I LL3_02455 PF01761 3-dehydroquinate synthase LL3_02456 PF01264 Chorismate synthase LL3_02457 PF01739 CheR methyltransferase, SAM binding domain LL3_02457 PF03705 CheR methyltransferase, all-alpha domain LL3_02458 PF00334 Nucleoside diphosphate kinase LL3_02459 PF00348 Polyprenyl synthetase LL3_02460 PF01209 ubiE/COQ5 methyltransferase family LL3_02461 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 LL3_02462 PF02081 Tryptophan RNA-binding attenuator protein LL3_02463 PF01227 GTP cyclohydrolase I LL3_02464 PF00216 Bacterial DNA-binding protein LL3_02465 PF09547 Stage IV sporulation protein A (spore_IV_A) LL3_02467 PF10966 Protein of unknown function (DUF2768) LL3_02468 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LL3_02468 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LL3_02469 PF01926 50S ribosome-binding GTPase LL3_02469 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LL3_02471 PF01070 FMN-dependent dehydrogenase LL3_02472 PF00575 S1 RNA binding domain LL3_02473 PF02224 Cytidylate kinase LL3_02474 PF17313 Family of unknown function (DUF5359) LL3_02475 PF12945 Flagellar protein YcgR LL3_02475 PF07238 PilZ domain LL3_02476 PF14620 YpeB sporulation LL3_02476 PF03413 Peptidase propeptide and YPEB domain LL3_02477 PF07486 Cell Wall Hydrolase LL3_02477 PF01471 Putative peptidoglycan binding domain LL3_02478 PF13367 PrsW family intramembrane metalloprotease LL3_02480 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LL3_02480 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LL3_02481 PF05389 Negative regulator of genetic competence (MecA) LL3_02482 PF00149 Calcineurin-like phosphoesterase LL3_02483 PF10864 Protein of unknown function (DUF2663) LL3_02484 PF01476 LysM domain LL3_02485 PF02517 CPBP intramembrane metalloprotease LL3_02486 PF00270 DEAD/DEAH box helicase LL3_02486 PF00271 Helicase conserved C-terminal domain LL3_02487 PF14493 Helix-turn-helix domain LL3_02490 PF12822 ECF transporter, substrate-specific component LL3_02492 PF01842 ACT domain LL3_02492 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LL3_02492 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LL3_02494 PF04542 Sigma-70 region 2 LL3_02494 PF08281 Sigma-70, region 4 LL3_02495 PF00512 His Kinase A (phospho-acceptor) domain LL3_02495 PF00989 PAS fold LL3_02495 PF00672 HAMP domain LL3_02495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LL3_02495 PF18698 Histidine kinase sensor domain LL3_02496 PF00072 Response regulator receiver domain LL3_02496 PF00486 Transcriptional regulatory protein, C terminal LL3_02497 PF01578 Cytochrome C assembly protein LL3_02498 PF05140 ResB-like family LL3_02499 PF00578 AhpC/TSA family LL3_02500 PF01479 S4 domain LL3_02500 PF00849 RNA pseudouridylate synthase LL3_02501 PF07670 Nucleoside recognition LL3_02502 PF07670 Nucleoside recognition LL3_02503 PF07943 Penicillin-binding protein 5, C-terminal domain LL3_02503 PF00768 D-alanyl-D-alanine carboxypeptidase LL3_02504 PF13047 Protein of unknown function (DUF3907) LL3_02505 PF04079 Segregation and condensation complex subunit ScpB LL3_02506 PF02616 Segregation and condensation protein ScpA LL3_02507 PF03745 Domain of unknown function (DUF309) LL3_02508 PF00583 Acetyltransferase (GNAT) family LL3_02509 PF00885 6,7-dimethyl-8-ribityllumazine synthase LL3_02510 PF00925 GTP cyclohydrolase II LL3_02510 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LL3_02511 PF00677 Lumazine binding domain LL3_02512 PF01872 RibD C-terminal domain LL3_02512 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LL3_02515 PF10502 Signal peptidase, peptidase S26 LL3_02518 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LL3_02520 PF06207 Protein of unknown function (DUF1002) LL3_02521 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LL3_02521 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LL3_02522 PF03323 Bacillus/Clostridium GerA spore germination protein LL3_02523 PF14097 Stage V sporulation protein AE1 LL3_02524 PF03862 SpoVAC/SpoVAEB sporulation membrane protein LL3_02525 PF07451 Stage V sporulation protein AD (SpoVAD) LL3_02526 PF03862 SpoVAC/SpoVAEB sporulation membrane protein LL3_02527 PF13782 Stage V sporulation protein AB LL3_02528 PF12164 Stage V sporulation protein AA LL3_02529 PF04539 Sigma-70 region 3 LL3_02529 PF04542 Sigma-70 region 2 LL3_02529 PF04545 Sigma-70, region 4 LL3_02530 PF13581 Histidine kinase-like ATPase domain LL3_02531 PF01740 STAS domain LL3_02532 PF00768 D-alanyl-D-alanine carboxypeptidase LL3_02532 PF07943 Penicillin-binding protein 5, C-terminal domain LL3_02533 PF01048 Phosphorylase superfamily LL3_02534 PF01676 Metalloenzyme superfamily LL3_02535 PF02899 Phage integrase, N-terminal SAM-like domain LL3_02535 PF00589 Phage integrase family LL3_02536 PF14004 Protein of unknown function (DUF4227) LL3_02537 PF01475 Ferric uptake regulator family LL3_02538 PF01944 Stage II sporulation protein M LL3_02541 PF00390 Malic enzyme, N-terminal domain LL3_02541 PF03949 Malic enzyme, NAD binding domain LL3_02541 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LL3_02542 PF03553 Na+/H+ antiporter family LL3_02543 PF00206 Lyase LL3_02543 PF10415 Fumarase C C-terminus LL3_02544 PF00710 Asparaginase, N-terminal LL3_02544 PF17763 Glutaminase/Asparaginase C-terminal domain LL3_02545 PF01381 Helix-turn-helix LL3_02547 PF00293 NUDIX domain LL3_02548 PF13072 Mother cell inhibitor of FtsZ LL3_02549 PF00248 Aldo/keto reductase family LL3_02551 PF12146 Serine aminopeptidase, S33 LL3_02552 PF10827 Protein of unknown function (DUF2552) LL3_02553 PF01521 Iron-sulphur cluster biosynthesis LL3_02554 PF04229 GrpB protein LL3_02554 PF13673 Acetyltransferase (GNAT) domain LL3_02556 PF00583 Acetyltransferase (GNAT) family LL3_02557 PF11799 impB/mucB/samB family C-terminal domain LL3_02557 PF00817 impB/mucB/samB family LL3_02559 PF14164 YqzH-like protein LL3_02560 PF01594 AI-2E family transporter LL3_02562 PF00485 Phosphoribulokinase / Uridine kinase family LL3_02563 PF00291 Pyridoxal-phosphate dependent enzyme LL3_02564 PF00106 short chain dehydrogenase LL3_02565 PF00753 Metallo-beta-lactamase superfamily LL3_02566 PF03807 NADP oxidoreductase coenzyme F420-dependent LL3_02566 PF14748 Pyrroline-5-carboxylate reductase dimerisation LL3_02568 PF03466 LysR substrate binding domain LL3_02568 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LL3_02570 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LL3_02571 PF12146 Serine aminopeptidase, S33 LL3_02572 PF00471 Ribosomal protein L33 LL3_02573 PF12706 Beta-lactamase superfamily domain LL3_02574 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LL3_02574 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LL3_02575 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LL3_02575 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain LL3_02576 PF11798 IMS family HHH motif LL3_02576 PF11799 impB/mucB/samB family C-terminal domain LL3_02576 PF00817 impB/mucB/samB family LL3_02578 PF02096 60Kd inner membrane protein LL3_02579 PF07687 Peptidase dimerisation domain LL3_02579 PF01546 Peptidase family M20/M25/M40 LL3_02580 PF01039 Carboxyl transferase domain LL3_02582 PF03734 L,D-transpeptidase catalytic domain LL3_02583 PF11728 Putative aromatic acid exporter C-terminal domain LL3_02583 PF06081 Aromatic acid exporter family member 1 LL3_02584 PF00005 ABC transporter LL3_02585 PF00528 Binding-protein-dependent transport system inner membrane component LL3_02586 PF00497 Bacterial extracellular solute-binding proteins, family 3 LL3_02587 PF06491 Disulphide isomerase LL3_02588 PF00781 Diacylglycerol kinase catalytic domain LL3_02589 PF00364 Biotin-requiring enzyme LL3_02589 PF02817 e3 binding domain LL3_02589 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LL3_02590 PF02780 Transketolase, C-terminal domain LL3_02590 PF02779 Transketolase, pyrimidine binding domain LL3_02591 PF00676 Dehydrogenase E1 component LL3_02592 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LL3_02592 PF07992 Pyridine nucleotide-disulphide oxidoreductase LL3_02593 PF00871 Acetokinase family LL3_02594 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LL3_02594 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LL3_02595 PF01515 Phosphate acetyl/butaryl transferase LL3_02596 PF00158 Sigma-54 interaction domain LL3_02596 PF02954 Bacterial regulatory protein, Fis family LL3_02596 PF00989 PAS fold LL3_02597 PF11118 Protein of unknown function (DUF2627) LL3_02599 PF03972 MmgE/PrpD family LL3_02600 PF00285 Citrate synthase, C-terminal domain LL3_02601 PF02770 Acyl-CoA dehydrogenase, middle domain LL3_02601 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LL3_02601 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LL3_02602 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LL3_02602 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LL3_02603 PF02803 Thiolase, C-terminal domain LL3_02603 PF00108 Thiolase, N-terminal domain LL3_02604 PF03009 Glycerophosphoryl diester phosphodiesterase family LL3_02605 PF01520 N-acetylmuramoyl-L-alanine amidase LL3_02612 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LL3_02613 PF10676 Spore germination protein gerPA/gerPF LL3_02614 PF10676 Spore germination protein gerPA/gerPF LL3_02615 PF00842 Alanine racemase, C-terminal domain LL3_02615 PF01168 Alanine racemase, N-terminal domain LL3_02617 PF00072 Response regulator receiver domain LL3_02617 PF08769 Sporulation initiation factor Spo0A C terminal LL3_02618 PF05580 SpoIVB peptidase S55 LL3_02618 PF17820 PDZ domain LL3_02619 PF13476 AAA domain LL3_02620 PF02863 Arginine repressor, C-terminal domain LL3_02620 PF01316 Arginine repressor, DNA binding domain LL3_02621 PF01728 FtsJ-like methyltransferase LL3_02621 PF01479 S4 domain LL3_02622 PF02780 Transketolase, C-terminal domain LL3_02622 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LL3_02622 PF02779 Transketolase, pyrimidine binding domain LL3_02623 PF00348 Polyprenyl synthetase LL3_02624 PF02609 Exonuclease VII small subunit LL3_02625 PF02601 Exonuclease VII, large subunit LL3_02625 PF13742 OB-fold nucleic acid binding domain LL3_02626 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LL3_02626 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LL3_02627 PF01029 NusB family LL3_02629 PF03780 Asp23 family, cell envelope-related function LL3_02630 PF02785 Biotin carboxylase C-terminal domain LL3_02630 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LL3_02630 PF00289 Biotin carboxylase, N-terminal domain LL3_02631 PF00364 Biotin-requiring enzyme LL3_02632 PF12685 SpoIIIAH-like protein LL3_02634 PF09581 Stage III sporulation protein AF (Spore_III_AF) LL3_02635 PF09546 Stage III sporulation protein AE (spore_III_AE) LL3_02636 PF06686 Stage III sporulation protein AC/AD protein family LL3_02637 PF06686 Stage III sporulation protein AC/AD protein family LL3_02638 PF09548 Stage III sporulation protein AB (spore_III_AB) LL3_02640 PF10942 Protein of unknown function (DUF2619) LL3_02641 PF01132 Elongation factor P (EF-P) OB domain LL3_02641 PF08207 Elongation factor P (EF-P) KOW-like domain LL3_02641 PF09285 Elongation factor P, C-terminal LL3_02642 PF00557 Metallopeptidase family M24 LL3_02642 PF01321 Creatinase/Prolidase N-terminal domain LL3_02643 PF11085 Conserved membrane protein YqhR LL3_02644 PF07136 Protein of unknown function (DUF1385) LL3_02646 PF01734 Patatin-like phospholipase LL3_02647 PF02742 Iron dependent repressor, metal binding and dimerisation domain LL3_02647 PF01325 Iron dependent repressor, N-terminal DNA binding domain LL3_02648 PF03099 Biotin/lipoate A/B protein ligase family LL3_02650 PF00581 Rhodanese-like domain LL3_02651 PF02347 Glycine cleavage system P-protein LL3_02652 PF02347 Glycine cleavage system P-protein LL3_02653 PF01571 Aminomethyltransferase folate-binding domain LL3_02653 PF08669 Glycine cleavage T-protein C-terminal barrel domain LL3_02654 PF00271 Helicase conserved C-terminal domain LL3_02654 PF00176 SNF2 family N-terminal domain LL3_02655 PF11079 Bacterial protein YqhG of unknown function LL3_02657 PF08671 Anti-repressor SinI LL3_02658 PF08671 Anti-repressor SinI LL3_02658 PF01381 Helix-turn-helix LL3_02659 PF12389 Camelysin metallo-endopeptidase LL3_02662 PF13028 Protein of unknown function (DUF3889) LL3_02663 PF14038 YqzE-like protein LL3_02664 PF14173 ComG operon protein 7 LL3_02665 PF15980 Putative Competence protein ComGF LL3_02667 PF07963 Prokaryotic N-terminal methylation motif LL3_02668 PF07963 Prokaryotic N-terminal methylation motif LL3_02669 PF00482 Type II secretion system (T2SS), protein F LL3_02670 PF00437 Type II/IV secretion system protein LL3_02672 PF01544 CorA-like Mg2+ transporter protein LL3_02673 PF01595 Cyclin M transmembrane N-terminal domain LL3_02673 PF03471 Transporter associated domain LL3_02673 PF00571 CBS domain LL3_02674 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain LL3_02674 PF01740 STAS domain LL3_02675 PF03960 ArsC family LL3_02676 PF11117 Protein of unknown function (DUF2626) LL3_02677 PF00753 Metallo-beta-lactamase superfamily LL3_02678 PF10958 Protein of unknown function (DUF2759) LL3_02679 PF01910 Thiamine-binding protein LL3_02681 PF00246 Zinc carboxypeptidase LL3_02682 PF00480 ROK family LL3_02683 PF06014 Bacterial protein of unknown function (DUF910) LL3_02684 PF03553 Na+/H+ antiporter family LL3_02686 PF01812 5-formyltetrahydrofolate cyclo-ligase family LL3_02691 PF00005 ABC transporter LL3_02692 PF00005 ABC transporter LL3_02693 PF00528 Binding-protein-dependent transport system inner membrane component LL3_02694 PF00528 Binding-protein-dependent transport system inner membrane component LL3_02695 PF12849 PBP superfamily domain LL3_02697 PF07690 Major Facilitator Superfamily LL3_02698 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LL3_02698 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LL3_02699 PF04306 Protein of unknown function (DUF456) LL3_02700 PF06691 Protein of unknown function (DUF1189) LL3_02702 PF04551 GcpE protein LL3_02705 PF01475 Ferric uptake regulator family LL3_02706 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LL3_02706 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LL3_02707 PF11116 Protein of unknown function (DUF2624) LL3_02708 PF01261 Xylose isomerase-like TIM barrel LL3_02709 PF00271 Helicase conserved C-terminal domain LL3_02709 PF00270 DEAD/DEAH box helicase LL3_02710 PF14181 YqfQ-like protein LL3_02711 PF02401 LytB protein LL3_02712 PF01784 NIF3 (NGG1p interacting factor 3) LL3_02713 PF04816 tRNA (adenine(22)-N(1))-methyltransferase LL3_02714 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LL3_02715 PF03979 Sigma-70 factor, region 1.1 LL3_02715 PF00140 Sigma-70 factor, region 1.2 LL3_02715 PF04542 Sigma-70 region 2 LL3_02715 PF04545 Sigma-70, region 4 LL3_02715 PF04539 Sigma-70 region 3 LL3_02716 PF01807 CHC2 zinc finger LL3_02716 PF10410 DnaB-helicase binding domain of primase LL3_02716 PF08275 DNA primase catalytic core, N-terminal domain LL3_02717 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LL3_02718 PF03618 Kinase/pyrophosphorylase LL3_02719 PF08279 HTH domain LL3_02719 PF00571 CBS domain LL3_02720 PF02092 Glycyl-tRNA synthetase beta subunit LL3_02721 PF02091 Glycyl-tRNA synthetase alpha subunit LL3_02722 PF11967 Recombination protein O N terminal LL3_02722 PF02565 Recombination protein O C terminal LL3_02723 PF14006 YqzL-like protein LL3_02724 PF01926 50S ribosome-binding GTPase LL3_02724 PF07650 KH domain LL3_02725 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LL3_02726 PF01219 Prokaryotic diacylglycerol kinase LL3_02727 PF02130 Uncharacterized protein family UPF0054 LL3_02728 PF07697 7TM-HD extracellular LL3_02728 PF07698 7TM receptor with intracellular HD hydrolase LL3_02728 PF01966 HD domain LL3_02729 PF02562 PhoH-like protein LL3_02730 PF06898 Putative stage IV sporulation protein YqfD LL3_02731 PF07873 YabP family LL3_02733 PF12127 SigmaW regulon antibacterial LL3_02734 PF01972 Serine dehydrogenase proteinase LL3_02734 PF01957 NfeD-like C-terminal, partner-binding LL3_02735 PF09424 Yqey-like protein LL3_02736 PF01165 Ribosomal protein S21 LL3_02737 PF02690 Na+/Pi-cotransporter LL3_02738 PF01938 TRAM domain LL3_02738 PF04055 Radical SAM superfamily LL3_02738 PF00919 Uncharacterized protein family UPF0004 LL3_02739 PF04452 RNA methyltransferase LL3_02741 PF00226 DnaJ domain LL3_02741 PF01556 DnaJ C terminal domain LL3_02741 PF00684 DnaJ central domain LL3_02742 PF00012 Hsp70 protein LL3_02743 PF01025 GrpE LL3_02744 PF01628 HrcA protein C terminal domain LL3_02745 PF04055 Radical SAM superfamily LL3_02745 PF06969 HemN C-terminal domain LL3_02746 PF00009 Elongation factor Tu GTP binding domain LL3_02746 PF06421 GTP-binding protein LepA C-terminus LL3_02746 PF03144 Elongation factor Tu domain 2 LL3_02746 PF00679 Elongation factor G C-terminus LL3_02747 PF12438 Protein of unknown function (DUF3679) LL3_02748 PF07454 Stage II sporulation protein P (SpoIIP) LL3_02749 PF03418 Germination protease LL3_02750 PF01649 Ribosomal protein S20 LL3_02751 PF06144 DNA polymerase III, delta subunit LL3_02752 PF14141 YqzM-like protein LL3_02754 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LL3_02755 PF10531 SLBB domain LL3_02756 PF14748 Pyrroline-5-carboxylate reductase dimerisation LL3_02756 PF03807 NADP oxidoreductase coenzyme F420-dependent LL3_02757 PF13649 Methyltransferase domain LL3_02759 PF01966 HD domain LL3_02760 PF01467 Cytidylyltransferase-like LL3_02761 PF01985 CRS1 / YhbY (CRM) domain LL3_02762 PF08501 Shikimate dehydrogenase substrate binding domain LL3_02762 PF01488 Shikimate / quinate 5-dehydrogenase LL3_02762 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LL3_02763 PF01926 50S ribosome-binding GTPase LL3_02765 PF08970 Sporulation inhibitor A LL3_02767 PF00657 GDSL-like Lipase/Acylhydrolase LL3_02768 PF01522 Polysaccharide deacetylase LL3_02769 PF01510 N-acetylmuramoyl-L-alanine amidase LL3_02769 PF01471 Putative peptidoglycan binding domain LL3_02770 PF09335 SNARE associated Golgi protein LL3_02774 PF04542 Sigma-70 region 2 LL3_02774 PF04545 Sigma-70, region 4 LL3_02777 PF04542 Sigma-70 region 2 LL3_02777 PF04545 Sigma-70, region 4 LL3_02782 PF07690 Major Facilitator Superfamily LL3_02784 PF05163 DinB family LL3_02789 PF01418 Helix-turn-helix domain, rpiR family LL3_02789 PF01380 SIS domain LL3_02790 PF01238 Phosphomannose isomerase type I LL3_02791 PF02378 Phosphotransferase system, EIIC LL3_02791 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LL3_02791 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LL3_02792 PF05043 Mga helix-turn-helix domain LL3_02792 PF08279 HTH domain LL3_02792 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LL3_02792 PF00874 PRD domain LL3_02794 PF12706 Beta-lactamase superfamily domain LL3_02795 PF04073 Aminoacyl-tRNA editing domain LL3_02798 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LL3_02798 PF03466 LysR substrate binding domain LL3_02799 PF07690 Major Facilitator Superfamily LL3_02800 PF00258 Flavodoxin LL3_02800 PF00175 Oxidoreductase NAD-binding domain LL3_02800 PF00067 Cytochrome P450 LL3_02800 PF00667 FAD binding domain LL3_02801 PF00440 Bacterial regulatory proteins, tetR family LL3_02801 PF16295 Tetracyclin repressor-like, C-terminal domain LL3_02803 PF08241 Methyltransferase domain LL3_02805 PF09501 Probable sporulation protein (Bac_small_yrzI) LL3_02806 PF01226 Formate/nitrite transporter LL3_02807 PF10057 Uncharacterized conserved protein (DUF2294) LL3_02808 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LL3_02808 PF01568 Molydopterin dinucleotide binding domain LL3_02808 PF00384 Molybdopterin oxidoreductase LL3_02808 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LL3_02808 PF00037 4Fe-4S binding domain LL3_02809 PF07849 Protein of unknown function (DUF1641) LL3_02810 PF14143 YrhC-like protein LL3_02811 PF01053 Cys/Met metabolism PLP-dependent enzyme LL3_02812 PF00291 Pyridoxal-phosphate dependent enzyme LL3_02813 PF01048 Phosphorylase superfamily LL3_02814 PF13649 Methyltransferase domain LL3_02815 PF10750 Protein of unknown function (DUF2536) LL3_02816 PF07423 Domain of unknown function (DUF1510) LL3_02817 PF03717 Penicillin-binding Protein dimerisation domain LL3_02817 PF00905 Penicillin binding protein transpeptidase domain LL3_02818 PF01272 Transcription elongation factor, GreA/GreB, C-term LL3_02818 PF03449 Transcription elongation factor, N-terminal LL3_02819 PF00485 Phosphoribulokinase / Uridine kinase family LL3_02823 PF02618 YceG-like family LL3_02824 PF06949 Protein of unknown function (DUF1292) LL3_02825 PF03652 Holliday junction resolvase LL3_02826 PF06135 IreB regulatory phosphoprotein LL3_02827 PF01411 tRNA synthetases class II (A) LL3_02827 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LL3_02827 PF02272 DHHA1 domain LL3_02828 PF01594 AI-2E family transporter LL3_02829 PF00005 ABC transporter LL3_02830 PF00497 Bacterial extracellular solute-binding proteins, family 3 LL3_02831 PF00528 Binding-protein-dependent transport system inner membrane component LL3_02832 PF00528 Binding-protein-dependent transport system inner membrane component LL3_02833 PF13056 Protein of unknown function (DUF3918) LL3_02835 PF05239 PRC-barrel domain LL3_02836 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain LL3_02836 PF14490 Helix-hairpin-helix containing domain LL3_02836 PF13538 UvrD-like helicase C-terminal domain LL3_02837 PF13181 Tetratricopeptide repeat LL3_02837 PF07719 Tetratricopeptide repeat LL3_02839 PF00266 Aminotransferase class-V LL3_02840 PF02082 Transcriptional regulator LL3_02841 PF12002 MgsA AAA+ ATPase C terminal LL3_02841 PF16193 AAA C-terminal domain LL3_02841 PF05496 Holliday junction DNA helicase RuvB P-loop domain LL3_02843 PF00899 ThiF family LL3_02844 PF01336 OB-fold nucleic acid binding domain LL3_02844 PF00152 tRNA synthetases class II (D, K and N) LL3_02844 PF02938 GAD domain LL3_02845 PF13393 Histidyl-tRNA synthetase LL3_02845 PF03129 Anticodon binding domain LL3_02847 PF17449 Uncharacterized YrzK-like LL3_02848 PF08239 Bacterial SH3 domain LL3_02848 PF01520 N-acetylmuramoyl-L-alanine amidase LL3_02849 PF02580 D-Tyr-tRNA(Tyr) deacylase LL3_02850 PF02824 TGS domain LL3_02850 PF13291 ACT domain LL3_02850 PF04607 Region found in RelA / SpoT proteins LL3_02851 PF00156 Phosphoribosyl transferase domain LL3_02852 PF17768 RecJ OB domain LL3_02852 PF02272 DHHA1 domain LL3_02852 PF10141 Single-strand DNA-specific exonuclease, C terminal domain LL3_02852 PF01368 DHH family LL3_02853 PF06305 Lipopolysaccharide assembly protein A domain LL3_02854 PF02080 TrkA-C domain LL3_02855 PF07549 SecD/SecF GG Motif LL3_02855 PF02355 Protein export membrane protein LL3_02856 PF13797 Post-transcriptional regulator LL3_02857 PF01943 Polysaccharide biosynthesis protein LL3_02857 PF14667 Polysaccharide biosynthesis C-terminal domain LL3_02858 PF04239 Protein of unknown function (DUF421) LL3_02859 PF12670 Protein of unknown function (DUF3792) LL3_02860 PF02699 Preprotein translocase subunit LL3_02861 PF01702 Queuine tRNA-ribosyltransferase LL3_02862 PF02547 Queuosine biosynthesis protein LL3_02863 PF11146 Protein of unknown function (DUF2905) LL3_02864 PF17864 RuvB AAA lid domain LL3_02864 PF05496 Holliday junction DNA helicase RuvB P-loop domain LL3_02864 PF05491 RuvB C-terminal winged helix domain LL3_02865 PF07499 RuvA, C-terminal domain LL3_02865 PF01330 RuvA N terminal domain LL3_02866 PF08955 BofC C-terminal domain LL3_02866 PF08977 Bypass of Forespore C, N terminal LL3_02868 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) LL3_02869 PF01476 LysM domain LL3_02870 PF02445 Quinolinate synthetase A protein LL3_02871 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LL3_02871 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LL3_02872 PF02910 Fumarate reductase flavoprotein C-term LL3_02872 PF00890 FAD binding domain LL3_02873 PF00266 Aminotransferase class-V LL3_02874 PF02829 3H domain LL3_02874 PF08279 HTH domain LL3_02875 PF01842 ACT domain LL3_02875 PF00800 Prephenate dehydratase LL3_02876 PF01842 ACT domain LL3_02877 PF01926 50S ribosome-binding GTPase LL3_02877 PF01018 GTP1/OBG LL3_02877 PF09269 Domain of unknown function (DUF1967) LL3_02878 PF14682 Sporulation initiation phospho-transferase B, C-terminal LL3_02878 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LL3_02879 PF01016 Ribosomal L27 protein LL3_02880 PF04327 Cysteine protease Prp LL3_02881 PF00829 Ribosomal prokaryotic L21 protein LL3_02882 PF02163 Peptidase family M50 LL3_02883 PF01551 Peptidase family M23 LL3_02884 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LL3_02885 PF03775 Septum formation inhibitor MinC, C-terminal domain LL3_02886 PF04093 rod shape-determining protein MreD LL3_02887 PF04085 rod shape-determining protein MreC LL3_02889 PF04002 RadC-like JAB domain LL3_02890 PF02545 Maf-like protein LL3_02891 PF05036 Sporulation related domain LL3_02892 PF06750 Bacterial Peptidase A24 N-terminal domain LL3_02892 PF01478 Type IV leader peptidase family LL3_02893 PF08245 Mur ligase middle domain LL3_02893 PF02875 Mur ligase family, glutamate ligase domain LL3_02894 PF00133 tRNA synthetases class I (I, L, M and V) LL3_02894 PF08264 Anticodon-binding domain of tRNA LL3_02894 PF10458 Valyl tRNA synthetase tRNA binding arm LL3_02897 PF01476 LysM domain LL3_02898 PF00202 Aminotransferase class-III LL3_02899 PF00490 Delta-aminolevulinic acid dehydratase LL3_02900 PF02602 Uroporphyrinogen-III synthase HemD LL3_02901 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LL3_02901 PF03900 Porphobilinogen deaminase, C-terminal domain LL3_02902 PF01578 Cytochrome C assembly protein LL3_02903 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LL3_02903 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LL3_02903 PF01488 Shikimate / quinate 5-dehydrogenase LL3_02905 PF01926 50S ribosome-binding GTPase LL3_02906 PF00004 ATPase family associated with various cellular activities (AAA) LL3_02906 PF05362 Lon protease (S16) C-terminal proteolytic domain LL3_02906 PF02190 ATP-dependent protease La (LON) substrate-binding domain LL3_02907 PF05362 Lon protease (S16) C-terminal proteolytic domain LL3_02907 PF00004 ATPase family associated with various cellular activities (AAA) LL3_02908 PF07724 AAA domain (Cdc48 subfamily) LL3_02908 PF10431 C-terminal, D2-small domain, of ClpB protein LL3_02908 PF06689 ClpX C4-type zinc finger LL3_02909 PF05697 Bacterial trigger factor protein (TF) LL3_02909 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LL3_02909 PF05698 Bacterial trigger factor protein (TF) C-terminus LL3_02912 PF00694 Aconitase C-terminal domain LL3_02913 PF00330 Aconitase family (aconitate hydratase) LL3_02914 PF00180 Isocitrate/isopropylmalate dehydrogenase LL3_02915 PF00682 HMGL-like LL3_02915 PF08502 LeuA allosteric (dimerisation) domain LL3_02916 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LL3_02916 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LL3_02917 PF01842 ACT domain LL3_02917 PF10369 Small subunit of acetolactate synthase LL3_02918 PF00205 Thiamine pyrophosphate enzyme, central domain LL3_02918 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LL3_02918 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LL3_02922 PF12850 Calcineurin-like phosphoesterase superfamily domain LL3_02923 PF01725 Ham1 family LL3_02924 PF03725 3' exoribonuclease family, domain 2 LL3_02924 PF01138 3' exoribonuclease family, domain 1 LL3_02925 PF10646 Sporulation and spore germination LL3_02926 PF01177 Asp/Glu/Hydantoin racemase LL3_02927 PF01047 MarR family LL3_02929 PF00196 Bacterial regulatory proteins, luxR family LL3_02930 PF03061 Thioesterase superfamily LL3_02931 PF13183 4Fe-4S dicluster domain LL3_02931 PF13085 2Fe-2S iron-sulfur cluster binding domain LL3_02932 PF00890 FAD binding domain LL3_02932 PF02910 Fumarate reductase flavoprotein C-term LL3_02933 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LL3_02934 PF10702 Protein of unknown function (DUF2507) LL3_02935 PF01842 ACT domain LL3_02935 PF00696 Amino acid kinase family LL3_02935 PF13840 ACT domain LL3_02936 PF08459 UvrC Helix-hairpin-helix N-terminal LL3_02936 PF02151 UvrB/uvrC motif LL3_02936 PF01541 GIY-YIG catalytic domain LL3_02937 PF00085 Thioredoxin LL3_02938 PF06964 Alpha-L-arabinofuranosidase C-terminal domain LL3_02939 PF00766 Electron transfer flavoprotein FAD-binding domain LL3_02939 PF01012 Electron transfer flavoprotein domain LL3_02940 PF01012 Electron transfer flavoprotein domain LL3_02941 PF00378 Enoyl-CoA hydratase/isomerase LL3_02942 PF00440 Bacterial regulatory proteins, tetR family LL3_02942 PF08359 YsiA-like protein, C-terminal region LL3_02943 PF13193 AMP-binding enzyme C-terminal domain LL3_02943 PF00501 AMP-binding enzyme LL3_02944 PF10924 Protein of unknown function (DUF2711) LL3_02946 PF03994 Domain of Unknown Function (DUF350) LL3_02947 PF00488 MutS domain V LL3_02947 PF01713 Smr domain LL3_02948 PF14791 DNA polymerase beta thumb LL3_02948 PF14716 Helix-hairpin-helix domain LL3_02948 PF02811 PHP domain LL3_02949 PF02674 Colicin V production protein LL3_02950 PF05164 Cell division protein ZapA LL3_02951 PF01351 Ribonuclease HII LL3_02951 PF11858 Domain of unknown function (DUF3378) LL3_02952 PF03147 Ferredoxin-fold anticodon binding domain LL3_02952 PF03483 B3/4 domain LL3_02952 PF03484 tRNA synthetase B5 domain LL3_02952 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LL3_02952 PF01588 Putative tRNA binding domain LL3_02953 PF01409 tRNA synthetases class II core domain (F) LL3_02953 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LL3_02955 PF00588 SpoU rRNA Methylase family LL3_02955 PF08032 RNA 2'-O ribose methyltransferase substrate binding LL3_02956 PF14098 Small, acid-soluble spore protein I LL3_02957 PF13556 PucR C-terminal helix-turn-helix domain LL3_02957 PF17853 GGDEF-like domain LL3_02957 PF05651 Putative sugar diacid recognition LL3_02958 PF02913 FAD linked oxidases, C-terminal domain LL3_02958 PF01565 FAD binding domain LL3_02959 PF02754 Cysteine-rich domain LL3_02959 PF13183 4Fe-4S dicluster domain LL3_02960 PF13722 5TM C-terminal transporter carbon starvation CstA LL3_02960 PF02554 Carbon starvation protein CstA LL3_02961 PF06964 Alpha-L-arabinofuranosidase C-terminal domain LL3_02962 PF00528 Binding-protein-dependent transport system inner membrane component LL3_02963 PF00528 Binding-protein-dependent transport system inner membrane component LL3_02964 PF01547 Bacterial extracellular solute-binding protein LL3_02965 PF13685 Iron-containing alcohol dehydrogenase LL3_02966 PF13344 Haloacid dehalogenase-like hydrolase LL3_02967 PF00596 Class II Aldolase and Adducin N-terminal domain LL3_02968 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LL3_02968 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LL3_02969 PF02610 L-arabinose isomerase LL3_02969 PF11762 L-arabinose isomerase C-terminal domain LL3_02970 PF04616 Glycosyl hydrolases family 43 LL3_02971 PF05343 M42 glutamyl aminopeptidase LL3_02973 PF06961 Protein of unknown function (DUF1294) LL3_02974 PF00453 Ribosomal protein L20 LL3_02975 PF00707 Translation initiation factor IF-3, C-terminal domain LL3_02975 PF05198 Translation initiation factor IF-3, N-terminal domain LL3_02976 PF04172 LrgB-like family LL3_02977 PF03788 LrgA family LL3_02978 PF04397 LytTr DNA-binding domain LL3_02978 PF00072 Response regulator receiver domain LL3_02979 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LL3_02979 PF06580 Histidine kinase LL3_02979 PF07694 5TMR of 5TMR-LYT LL3_02982 PF03129 Anticodon binding domain LL3_02982 PF02824 TGS domain LL3_02982 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LL3_02982 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LL3_02984 PF08812 YtxC-like family LL3_02985 PF09335 SNARE associated Golgi protein LL3_02986 PF07319 Primosomal protein DnaI N-terminus LL3_02986 PF01695 IstB-like ATP binding protein LL3_02987 PF07261 Replication initiation and membrane attachment LL3_02988 PF03477 ATP cone domain LL3_02989 PF02675 S-adenosylmethionine decarboxylase LL3_02990 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LL3_02990 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LL3_02991 PF01638 HxlR-like helix-turn-helix LL3_02992 PF07690 Major Facilitator Superfamily LL3_02993 PF00248 Aldo/keto reductase family LL3_02994 PF01121 Dephospho-CoA kinase LL3_02995 PF02659 Putative manganese efflux pump LL3_02996 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LL3_02996 PF06827 Zinc finger found in FPG and IleRS LL3_02996 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LL3_02997 PF00476 DNA polymerase family A LL3_02997 PF01367 5'-3' exonuclease, C-terminal SAM fold LL3_02997 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LL3_02998 PF16736 Single Cache-like LL3_02998 PF00989 PAS fold LL3_02998 PF00512 His Kinase A (phospho-acceptor) domain LL3_02998 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LL3_02999 PF00486 Transcriptional regulatory protein, C terminal LL3_02999 PF00072 Response regulator receiver domain LL3_03000 PF00056 lactate/malate dehydrogenase, NAD binding domain LL3_03000 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LL3_03001 PF00180 Isocitrate/isopropylmalate dehydrogenase LL3_03002 PF00285 Citrate synthase, C-terminal domain LL3_03003 PF04284 Protein of unknown function (DUF441) LL3_03004 PF01594 AI-2E family transporter LL3_03005 PF04186 FxsA cytoplasmic membrane protein LL3_03006 PF00224 Pyruvate kinase, barrel domain LL3_03006 PF02887 Pyruvate kinase, alpha/beta domain LL3_03006 PF00391 PEP-utilising enzyme, mobile domain LL3_03007 PF00365 Phosphofructokinase LL3_03008 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LL3_03009 PF01039 Carboxyl transferase domain LL3_03009 PF17848 Acetyl-coA carboxylase zinc finger domain LL3_03011 PF00390 Malic enzyme, N-terminal domain LL3_03011 PF03949 Malic enzyme, NAD binding domain LL3_03012 PF01336 OB-fold nucleic acid binding domain LL3_03012 PF07733 Bacterial DNA polymerase III alpha NTPase domain LL3_03012 PF14579 Helix-hairpin-helix motif LL3_03012 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LL3_03012 PF02811 PHP domain LL3_03013 PF14034 Sporulation protein YtrH LL3_03016 PF02272 DHHA1 domain LL3_03016 PF01368 DHH family LL3_03017 PF14007 YtpI-like protein LL3_03018 PF00571 CBS domain LL3_03018 PF07085 DRTGG domain LL3_03018 PF03061 Thioesterase superfamily LL3_03018 PF00392 Bacterial regulatory proteins, gntR family LL3_03022 PF14698 Argininosuccinate lyase C-terminal LL3_03022 PF00206 Lyase LL3_03023 PF00764 Arginosuccinate synthase LL3_03024 PF00994 Probable molybdopterin binding domain LL3_03025 PF00871 Acetokinase family LL3_03026 PF02384 N-6 DNA Methylase LL3_03027 PF08534 Redoxin LL3_03028 PF09579 Sporulation protein YtfJ (Spore_YtfJ) LL3_03029 PF11167 Protein of unknown function (DUF2953) LL3_03030 PF06271 RDD family LL3_03031 PF01343 Peptidase family S49 LL3_03032 PF01513 ATP-NAD kinase LL3_03033 PF07969 Amidohydrolase family LL3_03034 PF13193 AMP-binding enzyme C-terminal domain LL3_03034 PF00501 AMP-binding enzyme LL3_03035 PF00269 Small, acid-soluble spore proteins, alpha/beta type LL3_03036 PF02568 Thiamine biosynthesis protein (ThiI) LL3_03036 PF02926 THUMP domain LL3_03037 PF00266 Aminotransferase class-V LL3_03038 PF05525 Branched-chain amino acid transport protein LL3_03039 PF06160 Septation ring formation regulator, EzrA LL3_03041 PF02811 PHP domain LL3_03042 PF00440 Bacterial regulatory proteins, tetR family LL3_03043 PF13185 GAF domain LL3_03044 PF00990 Diguanylate cyclase, GGDEF domain LL3_03046 PF01479 S4 domain LL3_03046 PF00163 Ribosomal protein S4/S9 N-terminal domain LL3_03047 PF00970 Oxidoreductase FAD-binding domain LL3_03047 PF00042 Globin LL3_03047 PF00175 Oxidoreductase NAD-binding domain LL3_03048 PF01965 DJ-1/PfpI family LL3_03052 PF01545 Cation efflux family LL3_03052 PF16916 Dimerisation domain of Zinc Transporter LL3_03053 PF01978 Sugar-specific transcriptional regulator TrmB LL3_03053 PF11495 Archaeal transcriptional regulator TrmB LL3_03054 PF03591 AzlC protein LL3_03057 PF01479 S4 domain LL3_03057 PF00579 tRNA synthetases class I (W and Y) LL3_03058 PF00501 AMP-binding enzyme LL3_03058 PF13193 AMP-binding enzyme C-terminal domain LL3_03059 PF00583 Acetyltransferase (GNAT) family LL3_03060 PF00571 CBS domain LL3_03061 PF00850 Histone deacetylase domain LL3_03062 PF00691 OmpA family LL3_03062 PF13677 Membrane MotB of proton-channel complex MotA/MotB LL3_03063 PF01618 MotA/TolQ/ExbB proton channel family LL3_03064 PF00356 Bacterial regulatory proteins, lacI family LL3_03066 PF01817 Chorismate mutase type II LL3_03066 PF00793 DAHP synthetase I family LL3_03067 PF11009 Protein of unknown function (DUF2847) LL3_03068 PF12732 YtxH-like protein LL3_03069 PF06103 Bacterial protein of unknown function (DUF948) LL3_03070 PF01225 Mur ligase family, catalytic domain LL3_03070 PF08245 Mur ligase middle domain LL3_03070 PF02875 Mur ligase family, glutamate ligase domain LL3_03072 PF09397 Ftsk gamma domain LL3_03072 PF01580 FtsK/SpoIIIE family LL3_03072 PF17854 FtsK alpha domain LL3_03073 PF14794 Domain of unknown function (DUF4479) LL3_03073 PF01588 Putative tRNA binding domain LL3_03074 PF07285 Protein of unknown function (DUF1444) LL3_03075 PF00085 Thioredoxin LL3_03076 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ LL3_03077 PF05343 M42 glutamyl aminopeptidase LL3_03078 PF03413 Peptidase propeptide and YPEB domain LL3_03079 PF03949 Malic enzyme, NAD binding domain LL3_03079 PF00390 Malic enzyme, N-terminal domain LL3_03080 PF00753 Metallo-beta-lactamase superfamily LL3_03081 PF02390 Putative methyltransferase LL3_03082 PF14165 YtzH-like protein LL3_03083 PF01636 Phosphotransferase enzyme family LL3_03084 PF00781 Diacylglycerol kinase catalytic domain LL3_03087 PF00291 Pyridoxal-phosphate dependent enzyme LL3_03088 PF01546 Peptidase family M20/M25/M40 LL3_03089 PF00860 Permease family LL3_03090 PF05975 Bacterial ABC transporter protein EcsB LL3_03091 PF00005 ABC transporter LL3_03092 PF08220 DeoR-like helix-turn-helix domain LL3_03093 PF01479 S4 domain LL3_03093 PF00849 RNA pseudouridylate synthase LL3_03094 PF01943 Polysaccharide biosynthesis protein LL3_03094 PF14667 Polysaccharide biosynthesis C-terminal domain LL3_03097 PF02028 BCCT, betaine/carnitine/choline family transporter LL3_03099 PF10957 Sporulation protein Cse60 LL3_03104 PF11975 Family 4 glycosyl hydrolase C-terminal domain LL3_03104 PF02056 Family 4 glycosyl hydrolase LL3_03106 PF00581 Rhodanese-like domain LL3_03107 PF09334 tRNA synthetases class I (M) LL3_03107 PF08264 Anticodon-binding domain of tRNA LL3_03107 PF13603 Leucyl-tRNA synthetase, Domain 2 LL3_03107 PF00133 tRNA synthetases class I (I, L, M and V) LL3_03108 PF14074 Protein of unknown function (DUF4257) LL3_03110 PF13426 PAS domain LL3_03110 PF01740 STAS domain LL3_03111 PF07690 Major Facilitator Superfamily LL3_03112 PF09529 Integral membrane protein (intg_mem_TP0381) LL3_03113 PF02687 FtsX-like permease family LL3_03114 PF00005 ABC transporter LL3_03115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LL3_03116 PF00486 Transcriptional regulatory protein, C terminal LL3_03116 PF00072 Response regulator receiver domain LL3_03117 PF02687 FtsX-like permease family LL3_03117 PF12704 MacB-like periplasmic core domain LL3_03118 PF00005 ABC transporter LL3_03122 PF00005 ABC transporter LL3_03123 PF00392 Bacterial regulatory proteins, gntR family LL3_03125 PF10732 Protein of unknown function (DUF2524) LL3_03126 PF16199 Radical_SAM C-terminal domain LL3_03126 PF04055 Radical SAM superfamily LL3_03127 PF06962 Putative rRNA methylase LL3_03129 PF10776 Protein of unknown function (DUF2600) LL3_03130 PF12146 Serine aminopeptidase, S33 LL3_03131 PF00132 Bacterial transferase hexapeptide (six repeats) LL3_03132 PF00324 Amino acid permease LL3_03133 PF13537 Glutamine amidotransferase domain LL3_03133 PF00733 Asparagine synthase LL3_03134 PF02773 S-adenosylmethionine synthetase, C-terminal domain LL3_03134 PF02772 S-adenosylmethionine synthetase, central domain LL3_03134 PF00438 S-adenosylmethionine synthetase, N-terminal domain LL3_03135 PF01293 Phosphoenolpyruvate carboxykinase LL3_03136 PF10763 Protein of unknown function (DUF2584) LL3_03137 PF00326 Prolyl oligopeptidase family LL3_03139 PF00005 ABC transporter LL3_03140 PF00528 Binding-protein-dependent transport system inner membrane component LL3_03141 PF00293 NUDIX domain LL3_03142 PF05105 Bacteriophage holin family LL3_03143 PF00210 Ferritin-like domain LL3_03145 PF13115 YtkA-like LL3_03146 PF02664 S-Ribosylhomocysteinase (LuxS) LL3_03147 PF01809 Putative membrane protein insertion efficiency factor LL3_03148 PF00484 Carbonic anhydrase LL3_03149 PF01197 Ribosomal protein L31 LL3_03150 PF01654 Cytochrome bd terminal oxidase subunit I LL3_03151 PF02322 Cytochrome bd terminal oxidase subunit II LL3_03152 PF07561 Domain of Unknown Function (DUF1540) LL3_03154 PF13378 Enolase C-terminal domain-like LL3_03154 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LL3_03155 PF00501 AMP-binding enzyme LL3_03155 PF13193 AMP-binding enzyme C-terminal domain LL3_03156 PF00378 Enoyl-CoA hydratase/isomerase LL3_03157 PF00561 alpha/beta hydrolase fold LL3_03158 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LL3_03158 PF16582 Middle domain of thiamine pyrophosphate LL3_03158 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LL3_03159 PF00425 chorismate binding enzyme LL3_03160 PF01258 Prokaryotic dksA/traR C4-type zinc finger LL3_03161 PF03073 TspO/MBR family LL3_03163 PF09515 Thiamine transporter protein (Thia_YuaJ) LL3_03164 PF15975 Flotillin LL3_03164 PF01145 SPFH domain / Band 7 family LL3_03166 PF12867 DinB superfamily LL3_03168 PF00465 Iron-containing alcohol dehydrogenase LL3_03171 PF17735 Biofilm surface layer A LL3_03172 PF02254 TrkA-N domain LL3_03172 PF02080 TrkA-C domain LL3_03173 PF13457 GW (Gly-Tryp) dipeptide domain LL3_03173 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LL3_03175 PF00175 Oxidoreductase NAD-binding domain LL3_03175 PF00970 Oxidoreductase FAD-binding domain LL3_03175 PF00042 Globin LL3_03180 PF18801 response regulator aspartate phosphatase H, N terminal LL3_03180 PF13176 Tetratricopeptide repeat LL3_03181 PF02673 Bacitracin resistance protein BacA LL3_03182 PF01594 AI-2E family transporter LL3_03184 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LL3_03184 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LL3_03185 PF01965 DJ-1/PfpI family LL3_03186 PF00672 HAMP domain LL3_03186 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LL3_03186 PF02743 Cache domain LL3_03187 PF02743 Cache domain LL3_03187 PF00672 HAMP domain LL3_03187 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LL3_03188 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LL3_03188 PF02743 Cache domain LL3_03188 PF00672 HAMP domain LL3_03189 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LL3_03189 PF02743 Cache domain LL3_03189 PF00672 HAMP domain LL3_03192 PF03060 Nitronate monooxygenase LL3_03193 PF00128 Alpha amylase, catalytic domain LL3_03193 PF16657 Maltogenic Amylase, C-terminal domain LL3_03195 PF01595 Cyclin M transmembrane N-terminal domain LL3_03195 PF00571 CBS domain LL3_03195 PF03471 Transporter associated domain LL3_03196 PF04298 Putative neutral zinc metallopeptidase LL3_03198 PF11458 Membrane-integrating protein Mistic LL3_03199 PF07885 Ion channel LL3_03199 PF02254 TrkA-N domain LL3_03200 PF08868 YugN-like family LL3_03202 PF00342 Phosphoglucose isomerase LL3_03204 PF00465 Iron-containing alcohol dehydrogenase LL3_03205 PF00465 Iron-containing alcohol dehydrogenase LL3_03207 PF04070 Domain of unknown function (DUF378) LL3_03208 PF00575 S1 RNA binding domain LL3_03209 PF00155 Aminotransferase class I and II LL3_03210 PF01037 Lrp/AsnC ligand binding domain LL3_03211 PF08386 TAP-like protein LL3_03211 PF00561 alpha/beta hydrolase fold LL3_03212 PF08958 Domain of unknown function (DUF1871) LL3_03213 PF00155 Aminotransferase class I and II LL3_03214 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LL3_03214 PF00512 His Kinase A (phospho-acceptor) domain LL3_03215 PF08810 Kinase associated protein B LL3_03216 PF00929 Exonuclease LL3_03217 PF07690 Major Facilitator Superfamily LL3_03218 PF00905 Penicillin binding protein transpeptidase domain LL3_03218 PF00912 Transglycosylase LL3_03219 PF04134 Protein of unknown function, DUF393 LL3_03220 PF17328 Family of unknown function (DUF5366) LL3_03221 PF00989 PAS fold LL3_03221 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LL3_03221 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LL3_03221 PF17203 Single cache domain 3 LL3_03222 PF00072 Response regulator receiver domain LL3_03229 PF13244 Domain of unknown function (DUF4040) LL3_03229 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LL3_03229 PF00361 Proton-conducting membrane transporter LL3_03230 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter LL3_03231 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LL3_03232 PF00361 Proton-conducting membrane transporter LL3_03233 PF01899 Na+/H+ ion antiporter subunit LL3_03234 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) LL3_03235 PF03334 Na+/H+ antiporter subunit LL3_03236 PF03061 Thioesterase superfamily LL3_03237 PF00072 Response regulator receiver domain LL3_03237 PF00196 Bacterial regulatory proteins, luxR family LL3_03238 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LL3_03238 PF07730 Histidine kinase LL3_03240 PF00348 Polyprenyl synthetase LL3_03241 PF08181 DegQ (SacQ) family LL3_03244 PF00563 EAL domain LL3_03244 PF08668 HDOD domain LL3_03245 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LL3_03245 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain LL3_03245 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LL3_03246 PF00857 Isochorismatase family LL3_03247 PF07997 Protein of unknown function (DUF1694) LL3_03248 PF14166 YueH-like protein LL3_03249 PF10676 Spore germination protein gerPA/gerPF LL3_03250 PF01594 AI-2E family transporter LL3_03251 PF10842 Protein of unknown function (DUF2642) LL3_03252 PF01966 HD domain LL3_03253 PF00106 short chain dehydrogenase LL3_03254 PF17355 Family of unknown function (DUF5383) LL3_03256 PF01580 FtsK/SpoIIIE family LL3_03256 PF12538 DNA transporter LL3_03257 PF10140 WXG100 protein secretion system (Wss), protein YukC LL3_03258 PF08817 WXG100 protein secretion system (Wss), protein YukD LL3_03259 PF06013 Proteins of 100 residues with WXG LL3_03261 PF13556 PucR C-terminal helix-turn-helix domain LL3_03261 PF06018 CodY GAF-like domain LL3_03261 PF17853 GGDEF-like domain LL3_03262 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LL3_03262 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LL3_03263 PF10042 Uncharacterized conserved protein (DUF2278) LL3_03264 PF03621 MbtH-like protein LL3_03265 PF00550 Phosphopantetheine attachment site LL3_03265 PF00975 Thioesterase domain LL3_03265 PF13193 AMP-binding enzyme C-terminal domain LL3_03265 PF00501 AMP-binding enzyme LL3_03265 PF00668 Condensation domain LL3_03266 PF00857 Isochorismatase family LL3_03266 PF00550 Phosphopantetheine attachment site LL3_03267 PF00501 AMP-binding enzyme LL3_03267 PF13193 AMP-binding enzyme C-terminal domain LL3_03268 PF00425 chorismate binding enzyme LL3_03269 PF00106 short chain dehydrogenase LL3_03270 PF00756 Putative esterase LL3_03271 PF00174 Oxidoreductase molybdopterin binding domain LL3_03272 PF02632 BioY family LL3_03273 PF03553 Na+/H+ antiporter family LL3_03273 PF13726 Na+-H+ antiporter family LL3_03274 PF02789 Cytosol aminopeptidase family, N-terminal domain LL3_03274 PF00883 Cytosol aminopeptidase family, catalytic domain LL3_03275 PF02681 Divergent PAP2 family LL3_03276 PF06725 3D domain LL3_03277 PF14068 Putative membrane protein LL3_03279 PF07992 Pyridine nucleotide-disulphide oxidoreductase LL3_03281 PF07992 Pyridine nucleotide-disulphide oxidoreductase LL3_03283 PF00478 IMP dehydrogenase / GMP reductase domain LL3_03286 PF00005 ABC transporter LL3_03291 PF13302 Acetyltransferase (GNAT) domain LL3_03292 PF13302 Acetyltransferase (GNAT) domain LL3_03293 PF00106 short chain dehydrogenase LL3_03294 PF01521 Iron-sulphur cluster biosynthesis LL3_03295 PF01678 Diaminopimelate epimerase LL3_03296 PF01773 Na+ dependent nucleoside transporter N-terminus LL3_03296 PF07662 Na+ dependent nucleoside transporter C-terminus LL3_03297 PF07293 Protein of unknown function (DUF1450) LL3_03298 PF07992 Pyridine nucleotide-disulphide oxidoreductase LL3_03299 PF07315 Protein of unknown function (DUF1462) LL3_03300 PF01106 NifU-like domain LL3_03301 PF00326 Prolyl oligopeptidase family LL3_03301 PF07676 WD40-like Beta Propeller Repeat LL3_03302 PF00288 GHMP kinases N terminal domain LL3_03302 PF08544 GHMP kinases C terminal LL3_03303 PF00291 Pyridoxal-phosphate dependent enzyme LL3_03304 PF01842 ACT domain LL3_03304 PF00742 Homoserine dehydrogenase LL3_03304 PF03447 Homoserine dehydrogenase, NAD binding domain LL3_03307 PF04608 Phosphatidylglycerophosphatase A LL3_03308 PF13344 Haloacid dehalogenase-like hydrolase LL3_03309 PF01934 Protein of unknown function DUF86 LL3_03310 PF06265 Protein of unknown function (DUF1027) LL3_03311 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LL3_03311 PF04055 Radical SAM superfamily LL3_03312 PF01551 Peptidase family M23 LL3_03313 PF09560 Sporulation protein YunB (Spo_YunB) LL3_03314 PF02872 5'-nucleotidase, C-terminal domain LL3_03315 PF01925 Sulfite exporter TauE/SafE LL3_03316 PF01904 Protein of unknown function DUF72 LL3_03318 PF01979 Amidohydrolase family LL3_03319 PF07905 Purine catabolism regulatory protein-like family LL3_03319 PF13556 PucR C-terminal helix-turn-helix domain LL3_03319 PF17853 GGDEF-like domain LL3_03321 PF09349 OHCU decarboxylase LL3_03321 PF01014 Uricase LL3_03323 PF07690 Major Facilitator Superfamily LL3_03324 PF00266 Aminotransferase class-V LL3_03325 PF01546 Peptidase family M20/M25/M40 LL3_03326 PF04231 Endonuclease I LL3_03327 PF00005 ABC transporter LL3_03327 PF03459 TOBE domain LL3_03327 PF17912 MalK OB fold domain LL3_03328 PF07702 UTRA domain LL3_03328 PF00392 Bacterial regulatory proteins, gntR family LL3_03329 PF00294 pfkB family carbohydrate kinase LL3_03330 PF00528 Binding-protein-dependent transport system inner membrane component LL3_03331 PF00528 Binding-protein-dependent transport system inner membrane component LL3_03332 PF01547 Bacterial extracellular solute-binding protein LL3_03333 PF01380 SIS domain LL3_03334 PF13411 MerR HTH family regulatory protein LL3_03337 PF17418 Sporulation delaying protein SdpA LL3_03338 PF07853 Protein of unknown function (DUF1648) LL3_03339 PF01541 GIY-YIG catalytic domain LL3_03340 PF01266 FAD dependent oxidoreductase LL3_03341 PF01209 ubiE/COQ5 methyltransferase family LL3_03342 PF10903 Protein of unknown function (DUF2691) LL3_03344 PF01374 Glycosyl hydrolase family 46 LL3_03346 PF01510 N-acetylmuramoyl-L-alanine amidase LL3_03346 PF01476 LysM domain LL3_03346 PF01471 Putative peptidoglycan binding domain LL3_03347 PF05105 Bacteriophage holin family LL3_03351 PF11962 Peptidase_G2, IMC autoproteolytic cleavage domain LL3_03351 PF12708 Pectate lyase superfamily protein LL3_03352 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LL3_03352 PF13457 GW (Gly-Tryp) dipeptide domain LL3_03354 PF01464 Transglycosylase SLT domain LL3_03374 PF00145 C-5 cytosine-specific DNA methylase LL3_03375 PF01367 5'-3' exonuclease, C-terminal SAM fold LL3_03375 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LL3_03375 PF01612 3'-5' exonuclease LL3_03375 PF00476 DNA polymerase family A LL3_03382 PF01381 Helix-turn-helix LL3_03384 PF00589 Phage integrase family LL3_03384 PF02899 Phage integrase, N-terminal SAM-like domain LL3_03385 PF01458 Uncharacterized protein family (UPF0051) LL3_03386 PF01592 NifU-like N terminal domain LL3_03387 PF00266 Aminotransferase class-V LL3_03388 PF01458 Uncharacterized protein family (UPF0051) LL3_03389 PF00005 ABC transporter LL3_03391 PF02627 Carboxymuconolactone decarboxylase family LL3_03392 PF03180 NLPA lipoprotein LL3_03393 PF00528 Binding-protein-dependent transport system inner membrane component LL3_03394 PF00005 ABC transporter LL3_03394 PF09383 NIL domain LL3_03396 PF02036 SCP-2 sterol transfer family LL3_03397 PF00085 Thioredoxin LL3_03398 PF01751 Toprim domain LL3_03399 PF10830 Protein of unknown function (DUF2553) LL3_03400 PF01597 Glycine cleavage H-protein LL3_03401 PF03960 ArsC family LL3_03402 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LL3_03402 PF02770 Acyl-CoA dehydrogenase, middle domain LL3_03402 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LL3_03403 PF00108 Thiolase, N-terminal domain LL3_03403 PF02803 Thiolase, C-terminal domain LL3_03404 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LL3_03404 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LL3_03404 PF00378 Enoyl-CoA hydratase/isomerase LL3_03405 PF14115 YuzL-like protein LL3_03406 PF01619 Proline dehydrogenase LL3_03408 PF07875 Coat F domain LL3_03409 PF01047 MarR family LL3_03410 PF07690 Major Facilitator Superfamily LL3_03411 PF02923 Restriction endonuclease BamHI LL3_03412 PF01381 Helix-turn-helix LL3_03413 PF01555 DNA methylase LL3_03414 PF10835 Protein of unknown function (DUF2573) LL3_03415 PF00005 ABC transporter LL3_03416 PF14039 YusW-like protein LL3_03418 PF00106 short chain dehydrogenase LL3_03419 PF00210 Ferritin-like domain LL3_03420 PF13180 PDZ domain LL3_03422 PF00072 Response regulator receiver domain LL3_03422 PF00486 Transcriptional regulatory protein, C terminal LL3_03423 PF00672 HAMP domain LL3_03423 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LL3_03423 PF00512 His Kinase A (phospho-acceptor) domain LL3_03425 PF00440 Bacterial regulatory proteins, tetR family LL3_03426 PF00206 Lyase LL3_03426 PF10415 Fumarase C C-terminus LL3_03427 PF13113 Protein of unknown function (DUF3970) LL3_03428 PF03323 Bacillus/Clostridium GerA spore germination protein LL3_03429 PF03845 Spore germination protein LL3_03431 PF00196 Bacterial regulatory proteins, luxR family LL3_03431 PF00072 Response regulator receiver domain LL3_03432 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LL3_03432 PF07730 Histidine kinase LL3_03432 PF00672 HAMP domain LL3_03433 PF09922 Cell wall-active antibiotics response 4TMS YvqF LL3_03434 PF13349 Putative adhesin LL3_03435 PF04012 PspA/IM30 family LL3_03437 PF07690 Major Facilitator Superfamily LL3_03438 PF01923 Cobalamin adenosyltransferase LL3_03439 PF00005 ABC transporter LL3_03440 PF01032 FecCD transport family LL3_03441 PF01497 Periplasmic binding protein LL3_03442 PF00106 short chain dehydrogenase LL3_03443 PF08450 SMP-30/Gluconolactonase/LRE-like region LL3_03444 PF00512 His Kinase A (phospho-acceptor) domain LL3_03444 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LL3_03445 PF00072 Response regulator receiver domain LL3_03445 PF00486 Transcriptional regulatory protein, C terminal LL3_03448 PF04545 Sigma-70, region 4 LL3_03449 PF12841 YvrJ protein family LL3_03450 PF00190 Cupin LL3_03451 PF14184 Regulatory protein YrvL LL3_03452 PF00005 ABC transporter LL3_03453 PF01032 FecCD transport family LL3_03454 PF01032 FecCD transport family LL3_03455 PF01497 Periplasmic binding protein LL3_03456 PF04072 Leucine carboxyl methyltransferase LL3_03457 PF13520 Amino acid permease LL3_03458 PF09575 Small spore protein J (Spore_SspJ) LL3_03459 PF04307 LexA-binding, inner membrane-associated putative hydrolase LL3_03460 PF00884 Sulfatase LL3_03461 PF00884 Sulfatase LL3_03462 PF12727 PBP superfamily domain LL3_03462 PF12728 Helix-turn-helix domain LL3_03464 PF00528 Binding-protein-dependent transport system inner membrane component LL3_03465 PF00196 Bacterial regulatory proteins, luxR family LL3_03465 PF00072 Response regulator receiver domain LL3_03467 PF00005 ABC transporter LL3_03470 PF00248 Aldo/keto reductase family LL3_03472 PF00999 Sodium/hydrogen exchanger family LL3_03473 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LL3_03473 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LL3_03474 PF00175 Oxidoreductase NAD-binding domain LL3_03474 PF00667 FAD binding domain LL3_03474 PF00258 Flavodoxin LL3_03475 PF13538 UvrD-like helicase C-terminal domain LL3_03476 PF03458 UPF0126 domain LL3_03478 PF02600 Disulfide bond formation protein DsbB LL3_03479 PF13462 Thioredoxin LL3_03480 PF00403 Heavy-metal-associated domain LL3_03481 PF00403 Heavy-metal-associated domain LL3_03482 PF00403 Heavy-metal-associated domain LL3_03483 PF02583 Metal-sensitive transcriptional repressor LL3_03484 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LL3_03484 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LL3_03485 PF02525 Flavodoxin-like fold LL3_03486 PF00296 Luciferase-like monooxygenase LL3_03487 PF00462 Glutaredoxin LL3_03488 PF00296 Luciferase-like monooxygenase LL3_03489 PF00005 ABC transporter LL3_03490 PF00528 Binding-protein-dependent transport system inner membrane component LL3_03491 PF00528 Binding-protein-dependent transport system inner membrane component LL3_03493 PF00497 Bacterial extracellular solute-binding proteins, family 3 LL3_03494 PF00583 Acetyltransferase (GNAT) family LL3_03495 PF03466 LysR substrate binding domain LL3_03495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LL3_03496 PF00106 short chain dehydrogenase LL3_03497 PF01337 Barstar (barnase inhibitor) LL3_03498 PF01668 SmpB protein LL3_03499 PF00575 S1 RNA binding domain LL3_03499 PF00773 RNB domain LL3_03499 PF17876 Cold shock domain LL3_03499 PF08206 Ribonuclease B OB domain LL3_03500 PF12146 Serine aminopeptidase, S33 LL3_03501 PF03840 Preprotein translocase SecG subunit LL3_03502 PF01381 Helix-turn-helix LL3_03505 PF01638 HxlR-like helix-turn-helix LL3_03506 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LL3_03506 PF00512 His Kinase A (phospho-acceptor) domain LL3_03507 PF00486 Transcriptional regulatory protein, C terminal LL3_03507 PF00072 Response regulator receiver domain LL3_03510 PF00005 ABC transporter LL3_03511 PF00528 Binding-protein-dependent transport system inner membrane component LL3_03512 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LL3_03513 PF00528 Binding-protein-dependent transport system inner membrane component LL3_03514 PF00005 ABC transporter LL3_03514 PF00571 CBS domain LL3_03515 PF12802 MarR family LL3_03516 PF00528 Binding-protein-dependent transport system inner membrane component LL3_03517 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LL3_03518 PF00528 Binding-protein-dependent transport system inner membrane component LL3_03519 PF00571 CBS domain LL3_03519 PF00005 ABC transporter LL3_03520 PF12802 MarR family LL3_03521 PF01914 MarC family integral membrane protein LL3_03523 PF13240 zinc-ribbon domain LL3_03524 PF00583 Acetyltransferase (GNAT) family LL3_03527 PF02585 GlcNAc-PI de-N-acetylase LL3_03530 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LL3_03531 PF01370 NAD dependent epimerase/dehydratase family LL3_03532 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LL3_03533 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LL3_03533 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LL3_03533 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LL3_03534 PF02225 PA domain LL3_03534 PF04389 Peptidase family M28 LL3_03536 PF03952 Enolase, N-terminal domain LL3_03536 PF00113 Enolase, C-terminal TIM barrel domain LL3_03537 PF01676 Metalloenzyme superfamily LL3_03537 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LL3_03538 PF00121 Triosephosphate isomerase LL3_03539 PF00162 Phosphoglycerate kinase LL3_03541 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LL3_03541 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LL3_03542 PF04198 Putative sugar-binding domain LL3_03543 PF00083 Sugar (and other) transporter LL3_03544 PF00083 Sugar (and other) transporter LL3_03545 PF00392 Bacterial regulatory proteins, gntR family LL3_03546 PF00296 Luciferase-like monooxygenase LL3_03547 PF03466 LysR substrate binding domain LL3_03547 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LL3_03548 PF00892 EamA-like transporter family LL3_03549 PF00324 Amino acid permease LL3_03553 PF01418 Helix-turn-helix domain, rpiR family LL3_03553 PF01380 SIS domain LL3_03554 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LL3_03554 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LL3_03555 PF02447 GntP family permease LL3_03556 PF02589 LUD domain LL3_03557 PF02589 LUD domain LL3_03557 PF11870 Domain of unknown function (DUF3390) LL3_03557 PF13183 4Fe-4S dicluster domain LL3_03558 PF02754 Cysteine-rich domain LL3_03560 PF07729 FCD domain LL3_03560 PF00392 Bacterial regulatory proteins, gntR family LL3_03561 PF02652 L-lactate permease LL3_03562 PF04963 Sigma-54 factor, core binding domain LL3_03562 PF04552 Sigma-54, DNA binding domain LL3_03562 PF00309 Sigma-54 factor, Activator interacting domain (AID) LL3_03563 PF09628 YvfG protein LL3_03564 PF04230 Polysaccharide pyruvyl transferase LL3_03565 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LL3_03566 PF00132 Bacterial transferase hexapeptide (six repeats) LL3_03566 PF17836 PglD N-terminal domain LL3_03567 PF02397 Bacterial sugar transferase LL3_03568 PF01943 Polysaccharide biosynthesis protein LL3_03568 PF14667 Polysaccharide biosynthesis C-terminal domain LL3_03569 PF00535 Glycosyl transferase family 2 LL3_03570 PF04230 Polysaccharide pyruvyl transferase LL3_03571 PF00535 Glycosyl transferase family 2 LL3_03573 PF13439 Glycosyltransferase Family 4 LL3_03573 PF00534 Glycosyl transferases group 1 LL3_03574 PF00535 Glycosyl transferase family 2 LL3_03575 PF13439 Glycosyltransferase Family 4 LL3_03575 PF00534 Glycosyl transferases group 1 LL3_03576 PF02719 Polysaccharide biosynthesis protein LL3_03577 PF13614 AAA domain LL3_03578 PF02706 Chain length determinant protein LL3_03579 PF08671 Anti-repressor SinI LL3_03579 PF01381 Helix-turn-helix LL3_03580 PF00135 Carboxylesterase family LL3_03582 PF01872 RibD C-terminal domain LL3_03583 PF01494 FAD binding domain LL3_03586 PF00583 Acetyltransferase (GNAT) family LL3_03587 PF05870 Phenolic acid decarboxylase (PAD) LL3_03594 PF08244 Glycosyl hydrolases family 32 C terminal LL3_03594 PF00251 Glycosyl hydrolases family 32 N-terminal domain LL3_03595 PF01306 LacY proton/sugar symporter LL3_03597 PF00356 Bacterial regulatory proteins, lacI family LL3_03598 PF00574 Clp protease LL3_03599 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LL3_03599 PF03466 LysR substrate binding domain LL3_03600 PF04303 PrpF protein LL3_03601 PF00083 Sugar (and other) transporter LL3_03603 PF03641 Possible lysine decarboxylase LL3_03604 PF03819 MazG nucleotide pyrophosphohydrolase domain LL3_03605 PF00916 Sulfate permease family LL3_03605 PF01740 STAS domain LL3_03606 PF00484 Carbonic anhydrase LL3_03608 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LL3_03608 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LL3_03609 PF00545 ribonuclease LL3_03610 PF00797 N-acetyltransferase LL3_03611 PF00381 PTS HPr component phosphorylation site LL3_03612 PF10298 WhiA N-terminal LAGLIDADG-like domain LL3_03612 PF02650 WhiA C-terminal HTH domain LL3_03612 PF14527 WhiA LAGLIDADG-like domain LL3_03613 PF01933 Uncharacterised protein family UPF0052 LL3_03614 PF03668 P-loop ATPase protein family LL3_03615 PF00293 NUDIX domain LL3_03617 PF07992 Pyridine nucleotide-disulphide oxidoreductase LL3_03618 PF00877 NlpC/P60 family LL3_03622 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LL3_03622 PF00989 PAS fold LL3_03622 PF00512 His Kinase A (phospho-acceptor) domain LL3_03622 PF18698 Histidine kinase sensor domain LL3_03622 PF00672 HAMP domain LL3_03623 PF00486 Transcriptional regulatory protein, C terminal LL3_03623 PF00072 Response regulator receiver domain LL3_03624 PF00664 ABC transporter transmembrane region LL3_03624 PF00005 ABC transporter LL3_03625 PF01502 Phosphoribosyl-AMP cyclohydrolase LL3_03625 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LL3_03626 PF00977 Histidine biosynthesis protein LL3_03627 PF00977 Histidine biosynthesis protein LL3_03628 PF00117 Glutamine amidotransferase class-I LL3_03629 PF00475 Imidazoleglycerol-phosphate dehydratase LL3_03630 PF00815 Histidinol dehydrogenase LL3_03631 PF01634 ATP phosphoribosyltransferase LL3_03632 PF13393 Histidyl-tRNA synthetase LL3_03633 PF13529 Peptidase_C39 like family LL3_03634 PF14602 Hexapeptide repeat of succinyl-transferase LL3_03635 PF13419 Haloacid dehalogenase-like hydrolase LL3_03636 PF01790 Prolipoprotein diacylglyceryl transferase LL3_03637 PF02603 HPr Serine kinase N terminus LL3_03637 PF07475 HPr Serine kinase C-terminal domain LL3_03638 PF01979 Amidohydrolase family LL3_03639 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LL3_03641 PF00440 Bacterial regulatory proteins, tetR family LL3_03642 PF00149 Calcineurin-like phosphoesterase LL3_03643 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV LL3_03644 PF04024 PspC domain LL3_03645 PF13349 Putative adhesin LL3_03648 PF00005 ABC transporter LL3_03648 PF17760 UvrA interaction domain LL3_03648 PF17755 UvrA DNA-binding domain LL3_03649 PF17757 UvrB interaction domain LL3_03649 PF12344 Ultra-violet resistance protein B LL3_03649 PF02151 UvrB/uvrC motif LL3_03649 PF04851 Type III restriction enzyme, res subunit LL3_03649 PF00271 Helicase conserved C-terminal domain LL3_03650 PF09964 Uncharacterized protein conserved in bacteria (DUF2198) LL3_03651 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LL3_03651 PF00391 PEP-utilising enzyme, mobile domain LL3_03652 PF00440 Bacterial regulatory proteins, tetR family LL3_03653 PF07690 Major Facilitator Superfamily LL3_03654 PF17735 Biofilm surface layer A LL3_03656 PF17820 PDZ domain LL3_03657 PF17423 Swarming motility protein LL3_03658 PF01471 Putative peptidoglycan binding domain LL3_03658 PF03572 Peptidase family S41 LL3_03658 PF17820 PDZ domain LL3_03659 PF13229 Right handed beta helix region LL3_03660 PF18075 FtsX extracellular domain LL3_03660 PF02687 FtsX-like permease family LL3_03661 PF00005 ABC transporter LL3_03662 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LL3_03663 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LL3_03663 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LL3_03664 PF00472 RF-1 domain LL3_03664 PF03462 PCRF domain LL3_03665 PF01043 SecA preprotein cross-linking domain LL3_03665 PF07516 SecA Wing and Scaffold domain LL3_03665 PF07517 SecA DEAD-like domain LL3_03665 PF02810 SEC-C motif LL3_03666 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LL3_03666 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus LL3_03669 PF02561 Flagellar protein FliS LL3_03670 PF07196 Flagellin hook IN motif LL3_03670 PF07195 Flagellar hook-associated protein 2 C-terminus LL3_03670 PF02465 Flagellar hook-associated protein 2 N-terminus LL3_03671 PF00700 Bacterial flagellin C-terminal helical region LL3_03671 PF00669 Bacterial flagellin N-terminal helical region LL3_03672 PF02599 Global regulator protein family LL3_03673 PF02623 FliW protein LL3_03675 PF00669 Bacterial flagellin N-terminal helical region LL3_03675 PF00700 Bacterial flagellin C-terminal helical region LL3_03676 PF00460 Flagella basal body rod protein LL3_03676 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LL3_03677 PF05130 FlgN protein LL3_03678 PF04316 Anti-sigma-28 factor, FlgM LL3_03681 PF10719 Late competence development protein ComFB LL3_03682 PF00271 Helicase conserved C-terminal domain LL3_03682 PF04851 Type III restriction enzyme, res subunit LL3_03683 PF02645 Uncharacterised protein, DegV family COG1307 LL3_03684 PF00196 Bacterial regulatory proteins, luxR family LL3_03684 PF00072 Response regulator receiver domain LL3_03685 PF07730 Histidine kinase LL3_03685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LL3_03685 PF05384 Sensor protein DegS LL3_03686 PF01205 Uncharacterized protein family UPF0029 LL3_03686 PF09186 Domain of unknown function (DUF1949) LL3_03687 PF03816 Cell envelope-related transcriptional attenuator domain LL3_03688 PF00953 Glycosyl transferase family 4 LL3_03690 PF00535 Glycosyl transferase family 2 LL3_03691 PF02706 Chain length determinant protein LL3_03692 PF04932 O-Antigen ligase LL3_03693 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LL3_03693 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LL3_03693 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LL3_03694 PF13439 Glycosyltransferase Family 4 LL3_03694 PF00534 Glycosyl transferases group 1 LL3_03695 PF01943 Polysaccharide biosynthesis protein LL3_03695 PF14667 Polysaccharide biosynthesis C-terminal domain LL3_03696 PF02397 Bacterial sugar transferase LL3_03697 PF01520 N-acetylmuramoyl-L-alanine amidase LL3_03697 PF04122 Putative cell wall binding repeat 2 LL3_03698 PF08486 Stage II sporulation protein LL3_03698 PF04122 Putative cell wall binding repeat 2 LL3_03700 PF03816 Cell envelope-related transcriptional attenuator domain LL3_03701 PF02350 UDP-N-acetylglucosamine 2-epimerase LL3_03703 PF00483 Nucleotidyl transferase LL3_03704 PF00005 ABC transporter LL3_03705 PF01061 ABC-2 type transporter LL3_03706 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase LL3_03707 PF09318 Glycosyl transferase 1 domain A LL3_03707 PF00534 Glycosyl transferases group 1 LL3_03708 PF01467 Cytidylyltransferase-like LL3_03709 PF03808 Glycosyl transferase WecB/TagA/CpsF family LL3_03710 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase LL3_03711 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LL3_03711 PF05036 Sporulation related domain LL3_03711 PF08239 Bacterial SH3 domain LL3_03712 PF01238 Phosphomannose isomerase type I LL3_03715 PF03845 Spore germination protein LL3_03716 PF05504 Spore germination B3/ GerAC like, C-terminal LL3_03717 PF00535 Glycosyl transferase family 2 LL3_03718 PF00083 Sugar (and other) transporter LL3_03719 PF03816 Cell envelope-related transcriptional attenuator domain LL3_03722 PF04791 LMBR1-like membrane protein LL3_03723 PF00877 NlpC/P60 family LL3_03725 PF09587 Bacterial capsule synthesis protein PGA_cap LL3_03726 PF14102 Capsule biosynthesis CapC LL3_03727 PF08245 Mur ligase middle domain LL3_03729 PF03323 Bacillus/Clostridium GerA spore germination protein LL3_03730 PF03845 Spore germination protein LL3_03733 PF00356 Bacterial regulatory proteins, lacI family LL3_03734 PF00294 pfkB family carbohydrate kinase LL3_03735 PF05025 RbsD / FucU transport protein family LL3_03736 PF00005 ABC transporter LL3_03737 PF02653 Branched-chain amino acid transport system / permease component LL3_03738 PF13407 Periplasmic binding protein domain LL3_03739 PF08239 Bacterial SH3 domain LL3_03740 PF02525 Flavodoxin-like fold LL3_03741 PF03306 Alpha-acetolactate decarboxylase LL3_03742 PF00205 Thiamine pyrophosphate enzyme, central domain LL3_03742 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LL3_03742 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LL3_03743 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LL3_03743 PF03466 LysR substrate binding domain LL3_03744 PF02040 Arsenical pump membrane protein LL3_03747 PF08757 CotH kinase protein LL3_03751 PF01613 Flavin reductase like domain LL3_03755 PF13404 AsnC-type helix-turn-helix domain LL3_03755 PF01037 Lrp/AsnC ligand binding domain LL3_03756 PF02417 Chromate transporter LL3_03757 PF02417 Chromate transporter LL3_03761 PF14431 YwqJ-like deaminase LL3_03761 PF14449 Pre-toxin TG LL3_03761 PF04740 LXG domain of WXG superfamily LL3_03764 PF04740 LXG domain of WXG superfamily LL3_03764 PF14449 Pre-toxin TG LL3_03764 PF14431 YwqJ-like deaminase LL3_03766 PF16888 Domain of unknown function (DUF5082) LL3_03768 PF09234 Domain of unknown function (DUF1963) LL3_03769 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LL3_03769 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LL3_03769 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LL3_03772 PF13614 AAA domain LL3_03773 PF02706 Chain length determinant protein LL3_03773 PF13807 G-rich domain on putative tyrosine kinase LL3_03775 PF04434 SWIM zinc finger LL3_03776 PF12419 SNF2 Helicase protein LL3_03776 PF00176 SNF2 family N-terminal domain LL3_03776 PF00271 Helicase conserved C-terminal domain LL3_03778 PF08220 DeoR-like helix-turn-helix domain LL3_03778 PF00455 DeoR C terminal sensor domain LL3_03779 PF00436 Single-strand binding protein family LL3_03781 PF14183 YwpF-like protein LL3_03782 PF01741 Large-conductance mechanosensitive channel, MscL LL3_03783 PF07977 FabA-like domain LL3_03784 PF18801 response regulator aspartate phosphatase H, N terminal LL3_03785 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LL3_03785 PF00460 Flagella basal body rod protein LL3_03786 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LL3_03786 PF00460 Flagella basal body rod protein LL3_03789 PF12116 Stage III sporulation protein D LL3_03790 PF01047 MarR family LL3_03791 PF07690 Major Facilitator Superfamily LL3_03792 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin LL3_03793 PF07690 Major Facilitator Superfamily LL3_03794 PF00857 Isochorismatase family LL3_03795 PF00909 Ammonium Transporter Family LL3_03796 PF00543 Nitrogen regulatory protein P-II LL3_03797 PF01098 Cell cycle protein LL3_03798 PF01569 PAP2 superfamily LL3_03799 PF04892 VanZ like family LL3_03800 PF01551 Peptidase family M23 LL3_03801 PF00583 Acetyltransferase (GNAT) family LL3_03802 PF17319 Family of unknown function (DUF5362) LL3_03803 PF17370 Family of unknown function (DUF5392) LL3_03805 PF13091 PLD-like domain LL3_03805 PF13396 Phospholipase_D-nuclease N-terminal LL3_03807 PF17319 Family of unknown function (DUF5362) LL3_03808 PF13460 NAD(P)H-binding LL3_03809 PF02082 Transcriptional regulator LL3_03810 PF00449 Urease alpha-subunit, N-terminal domain LL3_03810 PF01979 Amidohydrolase family LL3_03811 PF00699 Urease beta subunit LL3_03812 PF00547 Urease, gamma subunit LL3_03814 PF05532 CsbD-like LL3_03816 PF18801 response regulator aspartate phosphatase H, N terminal LL3_03816 PF17874 MalT-like TPR region LL3_03817 PF06463 Molybdenum Cofactor Synthesis C LL3_03817 PF04055 Radical SAM superfamily LL3_03818 PF02634 FdhD/NarQ family LL3_03820 PF00092 von Willebrand factor type A domain LL3_03821 PF00092 von Willebrand factor type A domain LL3_03822 PF08486 Stage II sporulation protein LL3_03823 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LL3_03824 PF08680 TATA-box binding LL3_03825 PF06612 Protein of unknown function (DUF1146) LL3_03827 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LL3_03827 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LL3_03828 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LL3_03828 PF02874 ATP synthase alpha/beta family, beta-barrel domain LL3_03829 PF00231 ATP synthase LL3_03830 PF02874 ATP synthase alpha/beta family, beta-barrel domain LL3_03830 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LL3_03830 PF00306 ATP synthase alpha/beta chain, C terminal domain LL3_03831 PF00213 ATP synthase delta (OSCP) subunit LL3_03832 PF00430 ATP synthase B/B' CF(0) LL3_03833 PF00137 ATP synthase subunit C LL3_03834 PF00119 ATP synthase A chain LL3_03835 PF03899 ATP synthase I chain LL3_03838 PF00464 Serine hydroxymethyltransferase LL3_03839 PF04260 Protein of unknown function (DUF436) LL3_03840 PF02502 Ribose/Galactose Isomerase LL3_03841 PF01451 Low molecular weight phosphotyrosine protein phosphatase LL3_03842 PF02659 Putative manganese efflux pump LL3_03843 PF03481 Putative GTP-binding controlling metal-binding LL3_03843 PF01300 Telomere recombination LL3_03845 PF09551 Stage II sporulation protein R (spore_II_R) LL3_03846 PF17094 Uncharacterised protein family (UPF0715) LL3_03847 PF17247 Family of unknown function (DUF5316) LL3_03848 PF17827 PrmC N-terminal domain LL3_03848 PF05175 Methyltransferase small domain LL3_03849 PF00472 RF-1 domain LL3_03849 PF03462 PCRF domain LL3_03850 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LL3_03851 PF13411 MerR HTH family regulatory protein LL3_03852 PF03547 Membrane transport protein LL3_03853 PF03949 Malic enzyme, NAD binding domain LL3_03853 PF00390 Malic enzyme, N-terminal domain LL3_03854 PF00265 Thymidine kinase LL3_03855 PF01197 Ribosomal protein L31 LL3_03856 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LL3_03856 PF07498 Rho termination factor, N-terminal domain LL3_03856 PF07497 Rho termination factor, RNA-binding domain LL3_03857 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded LL3_03858 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LL3_03859 PF00923 Transaldolase/Fructose-6-phosphate aldolase LL3_03860 PF01116 Fructose-bisphosphate aldolase class-II LL3_03861 PF00072 Response regulator receiver domain LL3_03862 PF10740 Domain of unknown function (DUF2529) LL3_03863 PF00117 Glutamine amidotransferase class-I LL3_03863 PF06418 CTP synthase N-terminus LL3_03864 PF05066 HB1, ASXL, restriction endonuclease HTH domain LL3_03865 PF13183 4Fe-4S dicluster domain LL3_03865 PF02754 Cysteine-rich domain LL3_03866 PF13091 PLD-like domain LL3_03867 PF03851 UV-endonuclease UvdE LL3_03869 PF00005 ABC transporter LL3_03869 PF00664 ABC transporter transmembrane region LL3_03870 PF13091 PLD-like domain LL3_03870 PF13396 Phospholipase_D-nuclease N-terminal LL3_03871 PF02665 Nitrate reductase gamma subunit LL3_03872 PF02613 Nitrate reductase delta subunit LL3_03873 PF13247 4Fe-4S dicluster domain LL3_03873 PF14711 Respiratory nitrate reductase beta C-terminal LL3_03874 PF00384 Molybdopterin oxidoreductase LL3_03874 PF01568 Molydopterin dinucleotide binding domain LL3_03874 PF14710 Respiratory nitrate reductase alpha N-terminal LL3_03876 PF14256 YwiC-like protein LL3_03877 PF00325 Bacterial regulatory proteins, crp family LL3_03877 PF00027 Cyclic nucleotide-binding domain LL3_03878 PF07690 Major Facilitator Superfamily LL3_03879 PF05746 DALR anticodon binding domain LL3_03879 PF03485 Arginyl tRNA synthetase N terminal domain LL3_03879 PF00750 tRNA synthetases class I (R) LL3_03880 PF09148 Domain of unknown function (DUF1934) LL3_03883 PF18801 response regulator aspartate phosphatase H, N terminal LL3_03884 PF11131 Rap-phr extracellular signalling LL3_03885 PF00491 Arginase family LL3_03886 PF17284 Spermidine synthase tetramerisation domain LL3_03887 PF00905 Penicillin binding protein transpeptidase domain LL3_03887 PF00912 Transglycosylase LL3_03889 PF08741 YwhD family LL3_03890 PF02163 Peptidase family M50 LL3_03891 PF01361 Tautomerase enzyme LL3_03892 PF01047 MarR family LL3_03893 PF13520 Amino acid permease LL3_03895 PF01966 HD domain LL3_03897 PF07293 Protein of unknown function (DUF1450) LL3_03899 PF03551 Transcriptional regulator PadR-like family LL3_03902 PF12679 ABC-2 family transporter protein LL3_03907 PF03099 Biotin/lipoate A/B protein ligase family LL3_03908 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LL3_03908 PF03466 LysR substrate binding domain LL3_03909 PF03601 Conserved hypothetical protein 698 LL3_03910 PF01515 Phosphate acetyl/butaryl transferase LL3_03913 PF00155 Aminotransferase class I and II LL3_03914 PF07690 Major Facilitator Superfamily LL3_03917 PF07883 Cupin domain LL3_03919 PF07690 Major Facilitator Superfamily LL3_03920 PF07690 Major Facilitator Superfamily LL3_03921 PF00324 Amino acid permease LL3_03922 PF01546 Peptidase family M20/M25/M40 LL3_03923 PF00171 Aldehyde dehydrogenase family LL3_03925 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LL3_03925 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LL3_03926 PF17735 Biofilm surface layer A LL3_03927 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LL3_03928 PF04321 RmlD substrate binding domain LL3_03929 PF16363 GDP-mannose 4,6 dehydratase LL3_03930 PF00483 Nucleotidyl transferase LL3_03931 PF04101 Glycosyltransferase family 28 C-terminal domain LL3_03932 PF02348 Cytidylyltransferase LL3_03933 PF08666 SAF domain LL3_03933 PF03102 NeuB family LL3_03934 PF00583 Acetyltransferase (GNAT) family LL3_03935 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LL3_03936 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase LL3_03937 PF00535 Glycosyl transferase family 2 LL3_03938 PF09671 Spore coat protein (Spore_GerQ) LL3_03939 PF04241 Protein of unknown function (DUF423) LL3_03940 PF00860 Permease family LL3_03941 PF17261 Family of unknown function (DUF5327) LL3_03942 PF03167 Uracil DNA glycosylase superfamily LL3_03943 PF00535 Glycosyl transferase family 2 LL3_03945 PF08543 Phosphomethylpyrimidine kinase LL3_03947 PF08244 Glycosyl hydrolases family 32 C terminal LL3_03947 PF00251 Glycosyl hydrolases family 32 N-terminal domain LL3_03948 PF02378 Phosphotransferase system, EIIC LL3_03948 PF00367 phosphotransferase system, EIIB LL3_03949 PF00874 PRD domain LL3_03949 PF03123 CAT RNA binding domain LL3_03951 PF05922 Peptidase inhibitor I9 LL3_03951 PF02225 PA domain LL3_03951 PF00082 Subtilase family LL3_03951 PF13860 FlgD Ig-like domain LL3_03952 PF00296 Luciferase-like monooxygenase LL3_03953 PF08279 HTH domain LL3_03953 PF13280 WYL domain LL3_03957 PF00881 Nitroreductase family LL3_03958 PF01098 Cell cycle protein LL3_03959 PF00583 Acetyltransferase (GNAT) family LL3_03961 PF17368 Spore morphogenesis and germination YwcE LL3_03962 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LL3_03963 PF00510 Cytochrome c oxidase subunit III LL3_03964 PF00115 Cytochrome C and Quinol oxidase polypeptide I LL3_03965 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LL3_03965 PF02790 Cytochrome C oxidase subunit II, transmembrane domain LL3_03966 PF04226 Transglycosylase associated protein LL3_03967 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain LL3_03967 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain LL3_03968 PF08544 GHMP kinases C terminal LL3_03968 PF00288 GHMP kinases N terminal domain LL3_03968 PF10509 Galactokinase galactose-binding signature LL3_03969 PF04138 GtrA-like protein LL3_03970 PF00440 Bacterial regulatory proteins, tetR family LL3_03971 PF08671 Anti-repressor SinI LL3_03975 PF01323 DSBA-like thioredoxin domain LL3_03976 PF04261 Dyp-type peroxidase family LL3_03976 PF10518 TAT (twin-arginine translocation) pathway signal sequence LL3_03977 PF09375 Imelysin LL3_03978 PF03239 Iron permease FTR1 family LL3_03979 PF02581 Thiamine monophosphate synthase LL3_03980 PF02110 Hydroxyethylthiazole kinase family LL3_03981 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LL3_03981 PF03466 LysR substrate binding domain LL3_03982 PF03788 LrgA family LL3_03983 PF04172 LrgB-like family LL3_03985 PF09962 Uncharacterized conserved protein (DUF2196) LL3_03986 PF07739 TipAS antibiotic-recognition domain LL3_03986 PF13411 MerR HTH family regulatory protein LL3_03987 PF10026 Predicted Zn-dependent protease (DUF2268) LL3_03988 PF17785 PUA-like domain LL3_03988 PF10672 S-adenosylmethionine-dependent methyltransferase LL3_03989 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LL3_03990 PF02378 Phosphotransferase system, EIIC LL3_03991 PF00082 Subtilase family LL3_03992 PF01501 Glycosyl transferase family 8 LL3_03995 PF04607 Region found in RelA / SpoT proteins LL3_03996 PF01040 UbiA prenyltransferase family LL3_03998 PF12459 D-Ala-teichoic acid biosynthesis protein LL3_03999 PF13193 AMP-binding enzyme C-terminal domain LL3_03999 PF00501 AMP-binding enzyme LL3_04000 PF03062 MBOAT, membrane-bound O-acyltransferase family LL3_04001 PF00550 Phosphopantetheine attachment site LL3_04002 PF04914 DltD protein LL3_04003 PF01063 Amino-transferase class IV LL3_04004 PF11975 Family 4 glycosyl hydrolase C-terminal domain LL3_04004 PF02056 Family 4 glycosyl hydrolase LL3_04005 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit LL3_04006 PF02378 Phosphotransferase system, EIIC LL3_04007 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LL3_04010 PF02245 Methylpurine-DNA glycosylase (MPG) LL3_04012 PF01032 FecCD transport family LL3_04013 PF01032 FecCD transport family LL3_04015 PF01022 Bacterial regulatory protein, arsR family LL3_04016 PF02040 Arsenical pump membrane protein LL3_04017 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LL3_04018 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit LL3_04019 PF02378 Phosphotransferase system, EIIC LL3_04020 PF00232 Glycosyl hydrolase family 1 LL3_04021 PF00480 ROK family LL3_04022 PF01238 Phosphomannose isomerase type I LL3_04023 PF02156 Glycosyl hydrolase family 26 LL3_04024 PF06628 Catalase-related immune-responsive LL3_04024 PF00199 Catalase LL3_04025 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family LL3_04026 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin LL3_04027 PF01256 Carbohydrate kinase LL3_04028 PF00664 ABC transporter transmembrane region LL3_04028 PF00005 ABC transporter LL3_04029 PF00005 ABC transporter LL3_04029 PF00664 ABC transporter transmembrane region LL3_04030 PF02322 Cytochrome bd terminal oxidase subunit II LL3_04031 PF01654 Cytochrome bd terminal oxidase subunit I LL3_04032 PF03390 2-hydroxycarboxylate transporter family LL3_04033 PF01522 Polysaccharide deacetylase LL3_04034 PF00005 ABC transporter LL3_04034 PF17912 MalK OB fold domain LL3_04034 PF03459 TOBE domain LL3_04035 PF13556 PucR C-terminal helix-turn-helix domain LL3_04036 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LL3_04036 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LL3_04037 PF11611 Domain of unknown function (DUF4352) LL3_04038 PF16363 GDP-mannose 4,6 dehydratase LL3_04040 PF01546 Peptidase family M20/M25/M40 LL3_04040 PF07687 Peptidase dimerisation domain LL3_04044 PF04525 LURP-one-related LL3_04045 PF01717 Cobalamin-independent synthase, Catalytic domain LL3_04046 PF08241 Methyltransferase domain LL3_04048 PF01773 Na+ dependent nucleoside transporter N-terminus LL3_04048 PF07662 Na+ dependent nucleoside transporter C-terminus LL3_04052 PF06628 Catalase-related immune-responsive LL3_04052 PF18011 C-terminal domain found in long catalases LL3_04052 PF00199 Catalase LL3_04053 PF03600 Citrate transporter LL3_04054 PF00722 Glycosyl hydrolases family 16 LL3_04055 PF03123 CAT RNA binding domain LL3_04055 PF00874 PRD domain LL3_04056 PF11700 Vacuole effluxer Atg22 like LL3_04057 PF00270 DEAD/DEAH box helicase LL3_04057 PF03880 DbpA RNA binding domain LL3_04057 PF00271 Helicase conserved C-terminal domain LL3_04060 PF14176 YxiJ-like protein LL3_04068 PF00544 Pectate lyase LL3_04069 PF00892 EamA-like transporter family LL3_04070 PF00582 Universal stress protein family LL3_04071 PF00232 Glycosyl hydrolase family 1 LL3_04072 PF02378 Phosphotransferase system, EIIC LL3_04072 PF00367 phosphotransferase system, EIIB LL3_04072 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LL3_04074 PF00145 C-5 cytosine-specific DNA methylase LL3_04075 PF01119 DNA mismatch repair protein, C-terminal domain LL3_04075 PF08676 MutL C terminal dimerisation domain LL3_04079 PF16369 C-terminal lipocalin-like domain LL3_04079 PF04616 Glycosyl hydrolases family 43 LL3_04080 PF09021 HutP LL3_04081 PF00221 Aromatic amino acid lyase LL3_04082 PF01175 Urocanase Rossmann-like domain LL3_04082 PF17391 Urocanase N-terminal domain LL3_04082 PF17392 Urocanase C-terminal domain LL3_04083 PF01979 Amidohydrolase family LL3_04084 PF00491 Arginase family LL3_04085 PF00324 Amino acid permease LL3_04086 PF00591 Glycosyl transferase family, a/b domain LL3_04086 PF02885 Glycosyl transferase family, helical bundle domain LL3_04086 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain LL3_04087 PF07662 Na+ dependent nucleoside transporter C-terminus LL3_04087 PF01773 Na+ dependent nucleoside transporter N-terminus LL3_04088 PF01791 DeoC/LacD family aldolase LL3_04089 PF04198 Putative sugar-binding domain LL3_04092 PF11631 Protein of unknown function (DUF3255) LL3_04096 PF01497 Periplasmic binding protein LL3_04097 PF06486 Protein of unknown function (DUF1093) LL3_04098 PF02687 FtsX-like permease family LL3_04099 PF00005 ABC transporter LL3_04100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LL3_04101 PF00486 Transcriptional regulatory protein, C terminal LL3_04101 PF00072 Response regulator receiver domain LL3_04102 PF01116 Fructose-bisphosphate aldolase class-II LL3_04103 PF01261 Xylose isomerase-like TIM barrel LL3_04104 PF01261 Xylose isomerase-like TIM barrel LL3_04105 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LL3_04105 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LL3_04106 PF07690 Major Facilitator Superfamily LL3_04107 PF01261 Xylose isomerase-like TIM barrel LL3_04108 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LL3_04108 PF00205 Thiamine pyrophosphate enzyme, central domain LL3_04108 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LL3_04109 PF00294 pfkB family carbohydrate kinase LL3_04110 PF04962 KduI/IolB family LL3_04111 PF00171 Aldehyde dehydrogenase family LL3_04112 PF08220 DeoR-like helix-turn-helix domain LL3_04112 PF00455 DeoR C terminal sensor domain LL3_04113 PF00248 Aldo/keto reductase family LL3_04114 PF00083 Sugar (and other) transporter LL3_04115 PF00183 Hsp90 protein LL3_04115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LL3_04117 PF00072 Response regulator receiver domain LL3_04117 PF00196 Bacterial regulatory proteins, luxR family LL3_04118 PF07730 Histidine kinase LL3_04119 PF00487 Fatty acid desaturase LL3_04120 PF00440 Bacterial regulatory proteins, tetR family LL3_04121 PF00171 Aldehyde dehydrogenase family LL3_04122 PF13570 PQQ-like domain LL3_04122 PF13360 PQQ-like domain LL3_04122 PF01011 PQQ enzyme repeat LL3_04125 PF07690 Major Facilitator Superfamily LL3_04126 PF06271 RDD family LL3_04128 PF00578 AhpC/TSA family LL3_04129 PF07992 Pyridine nucleotide-disulphide oxidoreductase LL3_04129 PF13192 Thioredoxin domain LL3_04131 PF00324 Amino acid permease LL3_04135 PF01526 Tn3 transposase DDE domain LL3_04135 PF13700 Domain of unknown function (DUF4158) LL3_04136 PF02796 Helix-turn-helix domain of resolvase LL3_04136 PF00239 Resolvase, N terminal domain LL3_04141 PF03862 SpoVAC/SpoVAEB sporulation membrane protein LL3_04142 PF07451 Stage V sporulation protein AD (SpoVAD) LL3_04143 PF03862 SpoVAC/SpoVAEB sporulation membrane protein LL3_04144 PF04239 Protein of unknown function (DUF421) LL3_04146 PF13396 Phospholipase_D-nuclease N-terminal LL3_04146 PF13091 PLD-like domain LL3_04147 PF06874 Firmicute fructose-1,6-bisphosphatase LL3_04148 PF01799 [2Fe-2S] binding domain LL3_04148 PF00111 2Fe-2S iron-sulfur cluster binding domain LL3_04150 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LL3_04150 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LL3_04151 PF12804 MobA-like NTP transferase domain LL3_04152 PF02625 XdhC and CoxI family LL3_04152 PF13478 XdhC Rossmann domain LL3_04156 PF00580 UvrD/REP helicase N-terminal domain LL3_04156 PF13361 UvrD-like helicase C-terminal domain LL3_04158 PF02590 Predicted SPOUT methyltransferase LL3_04159 PF14116 YyzF-like protein LL3_04163 PF00248 Aldo/keto reductase family LL3_04164 PF00583 Acetyltransferase (GNAT) family LL3_04166 PF18801 response regulator aspartate phosphatase H, N terminal LL3_04167 PF00491 Arginase family LL3_04168 PF00324 Amino acid permease LL3_04169 PF00202 Aminotransferase class-III LL3_04170 PF13630 SdpI/YhfL protein family LL3_04170 PF07853 Protein of unknown function (DUF1648) LL3_04171 PF01022 Bacterial regulatory protein, arsR family LL3_04172 PF13426 PAS domain LL3_04172 PF02954 Bacterial regulatory protein, Fis family LL3_04172 PF00158 Sigma-54 interaction domain LL3_04175 PF00512 His Kinase A (phospho-acceptor) domain LL3_04175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LL3_04175 PF00672 HAMP domain LL3_04176 PF00486 Transcriptional regulatory protein, C terminal LL3_04176 PF00072 Response regulator receiver domain LL3_04178 PF13180 PDZ domain LL3_04179 PF00753 Metallo-beta-lactamase superfamily LL3_04180 PF09648 YycH protein LL3_04181 PF07435 YycH protein LL3_04182 PF00672 HAMP domain LL3_04182 PF00512 His Kinase A (phospho-acceptor) domain LL3_04182 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LL3_04182 PF13426 PAS domain LL3_04183 PF00072 Response regulator receiver domain LL3_04183 PF00486 Transcriptional regulatory protein, C terminal LL3_04186 PF00709 Adenylosuccinate synthetase LL3_04187 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LL3_04189 PF00772 DnaB-like helicase N terminal domain LL3_04189 PF03796 DnaB-like helicase C terminal domain LL3_04190 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) LL3_04192 PF14174 YycC-like protein LL3_04197 PF13477 Glycosyl transferase 4-like LL3_04197 PF00534 Glycosyl transferases group 1 LL3_04200 PF01281 Ribosomal protein L9, N-terminal domain LL3_04200 PF03948 Ribosomal protein L9, C-terminal domain LL3_04201 PF01368 DHH family LL3_04201 PF02272 DHHA1 domain LL3_04202 PF09991 Predicted membrane protein (DUF2232) LL3_04204 PF07875 Coat F domain LL3_04205 PF01638 HxlR-like helix-turn-helix LL3_04206 PF02833 DHHA2 domain LL3_04206 PF01368 DHH family LL3_04207 PF00892 EamA-like transporter family LL3_04208 PF02435 Levansucrase/Invertase LL3_04209 PF00251 Glycosyl hydrolases family 32 N-terminal domain LL3_04209 PF08244 Glycosyl hydrolases family 32 C terminal LL3_04210 PF00392 Bacterial regulatory proteins, gntR family LL3_04210 PF07729 FCD domain LL3_04211 PF05163 DinB family LL3_04212 PF07690 Major Facilitator Superfamily LL3_04215 PF00881 Nitroreductase family LL3_04216 PF01047 MarR family LL3_04217 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LL3_04217 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LL3_04219 PF01047 MarR family LL3_04220 PF13673 Acetyltransferase (GNAT) domain LL3_04221 PF00561 alpha/beta hydrolase fold LL3_04227 PF02517 CPBP intramembrane metalloprotease LL3_04228 PF00083 Sugar (and other) transporter LL3_04229 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LL3_04230 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LL3_04230 PF00356 Bacterial regulatory proteins, lacI family LL3_04231 PF03372 Endonuclease/Exonuclease/phosphatase family LL3_04232 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LL3_04232 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LL3_04233 PF12833 Helix-turn-helix domain LL3_04233 PF02805 Metal binding domain of Ada LL3_04235 PF00436 Single-strand binding protein family LL3_04236 PF01250 Ribosomal protein S6 LL3_04237 PF06071 Protein of unknown function (DUF933) LL3_04237 PF01926 50S ribosome-binding GTPase LL3_04238 PF00384 Molybdopterin oxidoreductase LL3_04238 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LL3_04238 PF01568 Molydopterin dinucleotide binding domain LL3_04239 PF06107 Bacterial protein of unknown function (DUF951) LL3_04242 PF06866 Protein of unknown function (DUF1256) LL3_04243 PF02195 ParB-like nuclease domain LL3_04243 PF17762 HTH domain found in ParB protein LL3_04244 PF13614 AAA domain LL3_04245 PF17762 HTH domain found in ParB protein LL3_04245 PF02195 ParB-like nuclease domain LL3_04246 PF02527 rRNA small subunit methyltransferase G LL3_04247 PF01134 Glucose inhibited division protein A LL3_04247 PF13932 GidA associated domain LL3_04248 PF01926 50S ribosome-binding GTPase LL3_04248 PF10396 GTP-binding protein TrmE N-terminus LL3_04248 PF12631 MnmE helical domain LL3_04249 PF14804 Jag N-terminus LL3_04249 PF01424 R3H domain LL3_04250 PF02096 60Kd inner membrane protein LL3_04251 PF00825 Ribonuclease P LL3_p00005 PF18801 response regulator aspartate phosphatase H, N terminal LL3_p00006 PF01446 Replication protein