LL3_00001 SM00382 ATPases associated with a variety of cellular activities LL3_00001 SM00760 Bacterial dnaA protein helix-turn-helix domain LL3_00002 SM00480 DNA polymerase III beta subunit LL3_00006 SM00387 Histidine kinase-like ATPases LL3_00006 SM00433 TopoisomeraseII LL3_00007 SM00434 DNA Topoisomerase IV LL3_00009 SM00116 Domain in cystathionine beta-synthase and other proteins. LL3_00009 SM01240 LL3_00009 LL3_00010 SM00936 Penicillin-binding protein 5, C-terminal domain LL3_00017 SM00257 Lysin motif LL3_00017 SM00636 LL3_00017 LL3_00021 SM00382 ATPases associated with a variety of cellular activities LL3_00023 SM00493 LL3_00023 LL3_00037 SM00465 GIY-YIG type nucleases (URI domain) LL3_00039 SM00966 SpoVT / AbrB like domain LL3_00042 SM01208 LL3_00042 LL3_00043 SM00493 LL3_00043 LL3_00044 SM00650 Ribosomal RNA adenine dimethylases LL3_00053 SM01400 LL3_00053 LL3_00057 SM00487 DEAD-like helicases superfamily LL3_00057 SM00490 helicase superfamily c-terminal domain LL3_00057 SM00982 LL3_00057 LL3_00057 SM01058 CarD-like/TRCF domain LL3_00058 SM00966 SpoVT / AbrB like domain LL3_00061 SM00363 S4 RNA-binding domain LL3_00065 SM00316 Ribosomal protein S1-like RNA-binding domain LL3_00066 SM00331 Sigma factor PP2C-like phosphatases LL3_00066 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain LL3_00068 SM00220 Serine/Threonine protein kinases, catalytic domain LL3_00069 SM00977 TilS substrate C-terminal domain LL3_00071 SM00382 ATPases associated with a variety of cellular activities LL3_00080 SM00905 Dihydroneopterin aldolase LL3_00082 SM00530 Helix-turn-helix XRE-family like proteins LL3_00088 SM00382 ATPases associated with a variety of cellular activities LL3_00088 SM01086 C-terminal, D2-small domain, of ClpB protein LL3_00089 SM00382 ATPases associated with a variety of cellular activities LL3_00091 SM00670 Large family of predicted nucleotide-binding domains LL3_00097 SM00840 LL3_00097 LL3_00098 SM00535 Ribonuclease III family LL3_00099 SM00967 RNA 2'-O ribose methyltransferase substrate binding LL3_00104 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. LL3_00104 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. LL3_00105 SM00649 Ribosomal protein L11/L12 LL3_00111 SM00663 RNA polymerase I subunit A N-terminus LL3_00114 SM00838 Elongation factor G C-terminus LL3_00114 SM00889 Elongation factor G, domain IV LL3_00121 SM01382 LL3_00121 LL3_00121 SM01383 LL3_00121 LL3_00123 SM00322 K homology RNA-binding domain LL3_00127 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. LL3_00141 SM00662 RNA polymerases D LL3_00142 SM00382 ATPases associated with a variety of cellular activities LL3_00143 SM00382 ATPases associated with a variety of cellular activities LL3_00150 SM00646 LL3_00150 LL3_00153 SM01251 LL3_00153 LL3_00159 SM00829 Enoylreductase LL3_00167 SM00342 helix_turn_helix, arabinose operon control protein LL3_00192 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_00196 SM00421 helix_turn_helix, Lux Regulon LL3_00196 SM00448 cheY-homologous receiver domain LL3_00197 SM00382 ATPases associated with a variety of cellular activities LL3_00214 SM00530 Helix-turn-helix XRE-family like proteins LL3_00222 SM00450 Rhodanese Homology Domain LL3_00231 SM00387 Histidine kinase-like ATPases LL3_00232 SM00448 cheY-homologous receiver domain LL3_00264 SM00028 Tetratricopeptide repeats LL3_00266 SM00642 Alpha-amylase domain LL3_00270 SM00382 ATPases associated with a variety of cellular activities LL3_00281 SM00116 Domain in cystathionine beta-synthase and other proteins. LL3_00281 SM00382 ATPases associated with a variety of cellular activities LL3_00290 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_00310 SM00833 Cobalamin synthesis protein cobW C-terminal domain LL3_00318 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family LL3_00321 SM00823 Phosphopantetheine attachment site LL3_00322 SM00823 Phosphopantetheine attachment site LL3_00323 SM00823 Phosphopantetheine attachment site LL3_00329 SM00382 ATPases associated with a variety of cellular activities LL3_00331 SM00062 Bacterial periplasmic substrate-binding proteins LL3_00338 SM00710 Parallel beta-helix repeats LL3_00346 SM00062 Bacterial periplasmic substrate-binding proteins LL3_00348 SM00382 ATPases associated with a variety of cellular activities LL3_00351 SM00382 ATPases associated with a variety of cellular activities LL3_00354 SM00448 cheY-homologous receiver domain LL3_00354 SM00862 Transcriptional regulatory protein, C terminal LL3_00355 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LL3_00355 SM00387 Histidine kinase-like ATPases LL3_00355 SM00388 His Kinase A (phosphoacceptor) domain LL3_00357 SM00028 Tetratricopeptide repeats LL3_00365 SM00382 ATPases associated with a variety of cellular activities LL3_00371 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor LL3_00372 SM00345 helix_turn_helix gluconate operon transcriptional repressor LL3_00379 SM00420 helix_turn_helix, Deoxyribose operon repressor LL3_00391 SM00796 Allophanate hydrolase subunit 1 LL3_00392 SM00797 Allophanate hydrolase subunit 2 LL3_00393 SM00346 helix_turn_helix isocitrate lyase regulation LL3_00409 SM00344 helix_turn_helix ASNC type LL3_00410 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain LL3_00410 SM00437 Bacterial DNA topoisomerase I DNA-binding domain LL3_00410 SM00493 LL3_00410 LL3_00413 SM00267 diguanylate cyclase LL3_00425 SM00028 Tetratricopeptide repeats LL3_00443 SM00091 PAS domain LL3_00443 SM00387 Histidine kinase-like ATPases LL3_00444 SM00448 cheY-homologous receiver domain LL3_00447 SM00382 ATPases associated with a variety of cellular activities LL3_00458 SM00487 DEAD-like helicases superfamily LL3_00458 SM00490 helicase superfamily c-terminal domain LL3_00465 SM01005 Alanine racemase, C-terminal domain LL3_00470 SM00387 Histidine kinase-like ATPases LL3_00471 SM00331 Sigma factor PP2C-like phosphatases LL3_00475 SM00331 Sigma factor PP2C-like phosphatases LL3_00475 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain LL3_00476 SM00316 Ribosomal protein S1-like RNA-binding domain LL3_00476 SM00732 Likely ribonuclease with RNase H fold. LL3_00478 SM00731 SprT homologues. LL3_00481 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_00486 SM00357 Cold shock protein domain LL3_00494 SM00345 helix_turn_helix gluconate operon transcriptional repressor LL3_00505 SM00342 helix_turn_helix, arabinose operon control protein LL3_00505 SM00871 Bacterial transcription activator, effector binding domain LL3_00510 SM00829 Enoylreductase LL3_00512 SM00422 helix_turn_helix, mercury resistance LL3_00515 SM00345 helix_turn_helix gluconate operon transcriptional repressor LL3_00520 SM00345 helix_turn_helix gluconate operon transcriptional repressor LL3_00528 SM00382 ATPases associated with a variety of cellular activities LL3_00533 SM00825 Beta-ketoacyl synthase LL3_00534 SM00530 Helix-turn-helix XRE-family like proteins LL3_00537 SM00422 helix_turn_helix, mercury resistance LL3_00541 SM01329 LL3_00541 LL3_00542 SM00345 helix_turn_helix gluconate operon transcriptional repressor LL3_00542 SM00895 LL3_00542 LL3_00553 SM00345 helix_turn_helix gluconate operon transcriptional repressor LL3_00553 SM00866 LL3_00553 LL3_00554 SM00345 helix_turn_helix gluconate operon transcriptional repressor LL3_00554 SM00895 LL3_00554 LL3_00562 SM00829 Enoylreductase LL3_00569 SM00382 ATPases associated with a variety of cellular activities LL3_00571 SM00881 CoA binding domain LL3_00576 SM00883 Chaperonin 10 Kd subunit LL3_00581 SM00530 Helix-turn-helix XRE-family like proteins LL3_00585 SM01040 BRO family, N-terminal domain LL3_00594 SM00382 ATPases associated with a variety of cellular activities LL3_00640 SM00644 LL3_00640 LL3_00647 SM00028 Tetratricopeptide repeats LL3_00647 SM00382 ATPases associated with a variety of cellular activities LL3_00649 SM00829 Enoylreductase LL3_00661 SM00829 Enoylreductase LL3_00672 SM00460 Transglutaminase/protease-like homologues LL3_00684 SM01001 AIR carboxylase LL3_00686 SM00998 Adenylosuccinate lyase C-terminus LL3_00689 SM01211 LL3_00689 LL3_00694 SM00798 AICARFT/IMPCHase bienzyme LL3_00694 SM00851 MGS-like domain LL3_00695 SM01209 LL3_00695 LL3_00695 SM01210 LL3_00695 LL3_00696 SM00344 helix_turn_helix ASNC type LL3_00706 SM00278 Helix-hairpin-helix DNA-binding motif class 1 LL3_00706 SM00292 breast cancer carboxy-terminal domain LL3_00706 SM00532 Ligase N family LL3_00713 SM00845 GatB domain LL3_00716 SM00046 Diacylglycerol kinase catalytic domain (presumed) LL3_00718 SM00382 ATPases associated with a variety of cellular activities LL3_00719 SM00382 ATPases associated with a variety of cellular activities LL3_00742 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_00757 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LL3_00760 SM00382 ATPases associated with a variety of cellular activities LL3_00762 SM00422 helix_turn_helix, mercury resistance LL3_00764 SM00382 ATPases associated with a variety of cellular activities LL3_00765 SM00487 DEAD-like helicases superfamily LL3_00765 SM00490 helicase superfamily c-terminal domain LL3_00766 SM00829 Enoylreductase LL3_00769 SM00656 LL3_00769 LL3_00776 SM00387 Histidine kinase-like ATPases LL3_00776 SM00388 His Kinase A (phosphoacceptor) domain LL3_00776 SM00448 cheY-homologous receiver domain LL3_00777 SM00448 cheY-homologous receiver domain LL3_00781 SM00387 Histidine kinase-like ATPases LL3_00782 SM00448 cheY-homologous receiver domain LL3_00785 SM00849 Metallo-beta-lactamase superfamily LL3_00801 SM00642 Alpha-amylase domain LL3_00802 SM00345 helix_turn_helix gluconate operon transcriptional repressor LL3_00802 SM00866 LL3_00802 LL3_00808 SM00354 helix_turn _helix lactose operon repressor LL3_00813 SM00226 Low molecular weight phosphatase family LL3_00826 SM00478 endonuclease III LL3_00829 SM00382 ATPases associated with a variety of cellular activities LL3_00830 SM00220 Serine/Threonine protein kinases, catalytic domain LL3_00830 SM01260 LL3_00830 LL3_00838 SM00861 Transketolase, pyrimidine binding domain LL3_00841 SM00382 ATPases associated with a variety of cellular activities LL3_00847 SM00382 ATPases associated with a variety of cellular activities LL3_00848 SM00382 ATPases associated with a variety of cellular activities LL3_00861 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_00876 SM00287 Bacterial SH3 domain homologues LL3_00899 SM00382 ATPases associated with a variety of cellular activities LL3_00903 SM00843 LL3_00903 LL3_00929 SM00644 LL3_00929 LL3_00933 SM00478 endonuclease III LL3_00933 SM00525 LL3_00933 LL3_00940 SM00382 ATPases associated with a variety of cellular activities LL3_00957 SM00382 ATPases associated with a variety of cellular activities LL3_00958 SM00382 ATPases associated with a variety of cellular activities LL3_00959 SM01060 LL3_00959 LL3_00962 SM00382 ATPases associated with a variety of cellular activities LL3_00963 SM00062 Bacterial periplasmic substrate-binding proteins LL3_00969 SM00530 Helix-turn-helix XRE-family like proteins LL3_00971 SM00567 E-Z type HEAT repeats LL3_00978 SM00763 PrkA AAA domain LL3_00981 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_00987 SM00345 helix_turn_helix gluconate operon transcriptional repressor LL3_00988 SM00382 ATPases associated with a variety of cellular activities LL3_00989 SM00382 ATPases associated with a variety of cellular activities LL3_00991 SM00357 Cold shock protein domain LL3_00993 SM00267 diguanylate cyclase LL3_01004 SM00116 Domain in cystathionine beta-synthase and other proteins. LL3_01013 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. LL3_01013 SM00387 Histidine kinase-like ATPases LL3_01014 SM00421 helix_turn_helix, Lux Regulon LL3_01014 SM00448 cheY-homologous receiver domain LL3_01018 SM00257 Lysin motif LL3_01022 SM00098 Alkaline phosphatase homologues LL3_01024 SM00257 Lysin motif LL3_01033 SM00563 Phosphate acyltransferases LL3_01034 SM01091 Transporter associated domain LL3_01035 SM00422 helix_turn_helix, mercury resistance LL3_01037 SM00825 Beta-ketoacyl synthase LL3_01039 SM01091 Transporter associated domain LL3_01054 SM00382 ATPases associated with a variety of cellular activities LL3_01055 SM00382 ATPases associated with a variety of cellular activities LL3_01068 SM00729 Elongator protein 3, MiaB family, Radical SAM LL3_01075 SM00382 ATPases associated with a variety of cellular activities LL3_01079 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LL3_01087 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_01094 SM00382 ATPases associated with a variety of cellular activities LL3_01112 SM00849 Metallo-beta-lactamase superfamily LL3_01120 SM00855 Phosphoglycerate mutase family LL3_01124 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LL3_01127 SM00914 LL3_01127 LL3_01132 SM00894 Excalibur calcium-binding domain LL3_01141 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_01170 SM00342 helix_turn_helix, arabinose operon control protein LL3_01171 SM00354 helix_turn _helix lactose operon repressor LL3_01176 SM00345 helix_turn_helix gluconate operon transcriptional repressor LL3_01182 SM00316 Ribosomal protein S1-like RNA-binding domain LL3_01184 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LL3_01184 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LL3_01198 SM00859 Semialdehyde dehydrogenase, NAD binding domain LL3_01202 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain LL3_01203 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LL3_01203 SM01209 LL3_01203 LL3_01213 SM00825 Beta-ketoacyl synthase LL3_01215 SM00382 ATPases associated with a variety of cellular activities LL3_01216 SM00382 ATPases associated with a variety of cellular activities LL3_01225 SM00382 ATPases associated with a variety of cellular activities LL3_01226 SM00382 ATPases associated with a variety of cellular activities LL3_01238 SM01118 LL3_01238 LL3_01240 SM00954 Region found in RelA / SpoT proteins LL3_01268 SM00849 Metallo-beta-lactamase superfamily LL3_01270 SM00382 ATPases associated with a variety of cellular activities LL3_01271 SM00966 SpoVT / AbrB like domain LL3_01280 SM00860 SMI1 / KNR4 family LL3_01300 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_01306 SM00420 helix_turn_helix, Deoxyribose operon repressor LL3_01306 SM01134 LL3_01306 LL3_01309 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_01314 SM00926 Molybdopterin oxidoreductase Fe4S4 domain LL3_01314 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LL3_01321 SM00382 ATPases associated with a variety of cellular activities LL3_01328 SM00354 helix_turn _helix lactose operon repressor LL3_01331 SM00448 cheY-homologous receiver domain LL3_01331 SM00862 Transcriptional regulatory protein, C terminal LL3_01332 SM00387 Histidine kinase-like ATPases LL3_01332 SM00388 His Kinase A (phosphoacceptor) domain LL3_01337 SM00028 Tetratricopeptide repeats LL3_01339 SM00257 Lysin motif LL3_01339 SM00644 LL3_01339 LL3_01344 SM00530 Helix-turn-helix XRE-family like proteins LL3_01347 SM00382 ATPases associated with a variety of cellular activities LL3_01368 SM00257 Lysin motif LL3_01381 SM00257 Lysin motif LL3_01381 SM00644 LL3_01381 LL3_01392 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LL3_01397 SM00382 ATPases associated with a variety of cellular activities LL3_01400 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain LL3_01402 SM00382 ATPases associated with a variety of cellular activities LL3_01411 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase LL3_01414 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_01418 SM00028 Tetratricopeptide repeats LL3_01422 SM00100 Cyclic nucleotide-monophosphate binding domain LL3_01427 SM00382 ATPases associated with a variety of cellular activities LL3_01430 SM00257 Lysin motif LL3_01430 SM00636 LL3_01430 LL3_01432 SM00116 Domain in cystathionine beta-synthase and other proteins. LL3_01432 SM00924 MgtE intracellular N domain LL3_01433 SM00422 helix_turn_helix, mercury resistance LL3_01437 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_01441 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen LL3_01442 SM00052 Putative diguanylate phosphodiesterase LL3_01442 SM00267 diguanylate cyclase LL3_01454 SM00091 PAS domain LL3_01454 SM00387 Histidine kinase-like ATPases LL3_01454 SM00388 His Kinase A (phosphoacceptor) domain LL3_01463 SM01007 Class II Aldolase and Adducin N-terminal domain LL3_01466 SM00387 Histidine kinase-like ATPases LL3_01466 SM00388 His Kinase A (phosphoacceptor) domain LL3_01468 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_01472 SM00382 ATPases associated with a variety of cellular activities LL3_01472 SM01086 C-terminal, D2-small domain, of ClpB protein LL3_01491 SM00354 helix_turn _helix lactose operon repressor LL3_01492 SM01061 CAT RNA binding domain LL3_01498 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LL3_01498 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LL3_01502 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) LL3_01502 SM00091 PAS domain LL3_01502 SM00387 Histidine kinase-like ATPases LL3_01502 SM00388 His Kinase A (phosphoacceptor) domain LL3_01506 SM00260 Two component signalling adaptor domain LL3_01506 SM00448 cheY-homologous receiver domain LL3_01509 SM00257 Lysin motif LL3_01513 SM00052 Putative diguanylate phosphodiesterase LL3_01533 SM00852 Probable molybdopterin binding domain LL3_01540 SM00382 ATPases associated with a variety of cellular activities LL3_01542 SM00420 helix_turn_helix, Deoxyribose operon repressor LL3_01542 SM01134 LL3_01542 LL3_01547 SM00382 ATPases associated with a variety of cellular activities LL3_01552 SM00966 SpoVT / AbrB like domain LL3_01553 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) LL3_01553 SM00091 PAS domain LL3_01553 SM00387 Histidine kinase-like ATPases LL3_01553 SM00388 His Kinase A (phosphoacceptor) domain LL3_01557 SM00849 Metallo-beta-lactamase superfamily LL3_01565 SM00861 Transketolase, pyrimidine binding domain LL3_01583 SM00838 Elongation factor G C-terminus LL3_01587 SM00670 Large family of predicted nucleotide-binding domains LL3_01608 SM00028 Tetratricopeptide repeats LL3_01613 SM00465 GIY-YIG type nucleases (URI domain) LL3_01637 SM00857 Resolvase, N terminal domain LL3_01641 SM00878 Biotin carboxylase C-terminal domain LL3_01651 SM00116 Domain in cystathionine beta-synthase and other proteins. LL3_01673 SM00740 LL3_01673 LL3_01674 SM00740 LL3_01674 LL3_01683 SM00842 Cell division protein FtsA LL3_01684 SM00864 Tubulin/FtsZ family, GTPase domain LL3_01684 SM00865 Tubulin/FtsZ family, C-terminal domain LL3_01690 SM00382 ATPases associated with a variety of cellular activities LL3_01698 SM00363 S4 RNA-binding domain LL3_01703 SM00363 S4 RNA-binding domain LL3_01709 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain LL3_01710 SM00851 MGS-like domain LL3_01710 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LL3_01713 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family LL3_01723 SM00642 Alpha-amylase domain LL3_01725 SM00831 Cation transporter/ATPase, N-terminus LL3_01728 SM00072 Guanylate kinase homologues. LL3_01729 SM01409 LL3_01729 LL3_01731 SM00487 DEAD-like helicases superfamily LL3_01731 SM00490 helicase superfamily c-terminal domain LL3_01736 SM00331 Sigma factor PP2C-like phosphatases LL3_01736 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain LL3_01737 SM00220 Serine/Threonine protein kinases, catalytic domain LL3_01737 SM00740 LL3_01737 LL3_01740 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain LL3_01744 SM01120 LL3_01744 LL3_01744 SM01121 LL3_01744 LL3_01747 SM00487 DEAD-like helicases superfamily LL3_01747 SM00490 helicase superfamily c-terminal domain LL3_01750 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. LL3_01751 SM00822 LL3_01751 LL3_01753 SM00358 Double-stranded RNA binding motif LL3_01753 SM00535 Ribonuclease III family LL3_01754 SM00968 SMC proteins Flexible Hinge Domain LL3_01755 SM00382 ATPases associated with a variety of cellular activities LL3_01755 SM00962 SRP54-type protein, GTPase domain LL3_01755 SM00963 SRP54-type protein, helical bundle domain LL3_01757 SM00382 ATPases associated with a variety of cellular activities LL3_01757 SM00962 SRP54-type protein, GTPase domain LL3_01757 SM00963 SRP54-type protein, helical bundle domain LL3_01769 SM00881 CoA binding domain LL3_01771 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain LL3_01771 SM00437 Bacterial DNA topoisomerase I DNA-binding domain LL3_01771 SM00493 LL3_01771 LL3_01775 SM00382 ATPases associated with a variety of cellular activities LL3_01775 SM01086 C-terminal, D2-small domain, of ClpB protein LL3_01783 SM00382 ATPases associated with a variety of cellular activities LL3_01793 SM00448 cheY-homologous receiver domain LL3_01800 SM00962 SRP54-type protein, GTPase domain LL3_01802 SM00448 cheY-homologous receiver domain LL3_01803 SM00073 Histidine Phosphotransfer domain LL3_01803 SM00260 Two component signalling adaptor domain LL3_01803 SM00387 Histidine kinase-like ATPases LL3_01803 SM01231 LL3_01803 LL3_01804 SM00260 Two component signalling adaptor domain LL3_01816 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LL3_01818 SM00479 LL3_01818 LL3_01818 SM00481 DNA polymerase alpha chain like domain LL3_01820 SM00316 Ribosomal protein S1-like RNA-binding domain LL3_01820 SM00322 K homology RNA-binding domain LL3_01827 SM00904 Riboflavin kinase LL3_01828 SM00316 Ribosomal protein S1-like RNA-binding domain LL3_01828 SM00322 K homology RNA-binding domain LL3_01834 SM00859 Semialdehyde dehydrogenase, NAD binding domain LL3_01836 SM01130 LL3_01836 LL3_01837 SM00849 Metallo-beta-lactamase superfamily LL3_01840 SM00382 ATPases associated with a variety of cellular activities LL3_01840 SM00843 LL3_01840 LL3_01841 SM00345 helix_turn_helix gluconate operon transcriptional repressor LL3_01841 SM00866 LL3_01841 LL3_01843 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_01850 SM00530 Helix-turn-helix XRE-family like proteins LL3_01852 SM00852 Probable molybdopterin binding domain LL3_01853 SM00382 ATPases associated with a variety of cellular activities LL3_01855 SM00322 K homology RNA-binding domain LL3_01855 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LL3_01858 SM00829 Enoylreductase LL3_01860 SM00729 Elongator protein 3, MiaB family, Radical SAM LL3_01863 SM00533 DNA-binding domain of DNA mismatch repair MUTS family LL3_01863 SM00534 ATPase domain of DNA mismatch repair MUTS family LL3_01864 SM00853 MutL C terminal dimerisation domain LL3_01864 SM01340 LL3_01864 LL3_01865 SM00849 Metallo-beta-lactamase superfamily LL3_01866 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. LL3_01867 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. LL3_01868 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. LL3_01873 SM00822 LL3_01873 LL3_01873 SM00823 Phosphopantetheine attachment site LL3_01873 SM00825 Beta-ketoacyl synthase LL3_01873 SM00826 LL3_01873 LL3_01873 SM01294 LL3_01873 LL3_01874 SM00822 LL3_01874 LL3_01874 SM00823 Phosphopantetheine attachment site LL3_01874 SM00825 Beta-ketoacyl synthase LL3_01874 SM00826 LL3_01874 LL3_01874 SM01294 LL3_01874 LL3_01875 SM00822 LL3_01875 LL3_01875 SM00823 Phosphopantetheine attachment site LL3_01875 SM00825 Beta-ketoacyl synthase LL3_01875 SM00826 LL3_01875 LL3_01875 SM01294 LL3_01875 LL3_01876 SM00822 LL3_01876 LL3_01876 SM00823 Phosphopantetheine attachment site LL3_01876 SM00825 Beta-ketoacyl synthase LL3_01876 SM00826 LL3_01876 LL3_01876 SM01294 LL3_01876 LL3_01877 SM00823 Phosphopantetheine attachment site LL3_01877 SM00825 Beta-ketoacyl synthase LL3_01877 SM01294 LL3_01877 LL3_01903 SM00382 ATPases associated with a variety of cellular activities LL3_01906 SM00422 helix_turn_helix, mercury resistance LL3_01907 SM01230 LL3_01907 LL3_01924 SM00829 Enoylreductase LL3_01930 SM00829 Enoylreductase LL3_01948 SM00710 Parallel beta-helix repeats LL3_01958 SM00257 Lysin motif LL3_01959 SM00857 Resolvase, N terminal domain LL3_01961 SM00861 Transketolase, pyrimidine binding domain LL3_01966 SM00448 cheY-homologous receiver domain LL3_01980 SM01207 LL3_01980 LL3_01981 SM00881 CoA binding domain LL3_01982 SM00387 Histidine kinase-like ATPases LL3_01982 SM00433 TopoisomeraseII LL3_01983 SM00434 DNA Topoisomerase IV LL3_01995 SM00387 Histidine kinase-like ATPases LL3_01995 SM00388 His Kinase A (phosphoacceptor) domain LL3_01996 SM00448 cheY-homologous receiver domain LL3_01996 SM00862 Transcriptional regulatory protein, C terminal LL3_01998 SM00606 Cellulose Binding Domain Type IV LL3_02000 SM00823 Phosphopantetheine attachment site LL3_02000 SM00824 Thioesterase LL3_02001 SM00823 Phosphopantetheine attachment site LL3_02002 SM00823 Phosphopantetheine attachment site LL3_02002 SM00825 Beta-ketoacyl synthase LL3_02003 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. LL3_02007 SM00882 Coenzyme A transferase LL3_02008 SM00882 Coenzyme A transferase LL3_02010 SM00729 Elongator protein 3, MiaB family, Radical SAM LL3_02010 SM00876 Biotin and Thiamin Synthesis associated domain LL3_02022 SM00878 Biotin carboxylase C-terminal domain LL3_02027 SM00824 Thioesterase LL3_02028 SM00823 Phosphopantetheine attachment site LL3_02028 SM01294 LL3_02028 LL3_02039 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor LL3_02046 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase LL3_02049 SM00822 LL3_02049 LL3_02052 SM00155 Phospholipase D. Active site motifs. LL3_02062 SM00857 Resolvase, N terminal domain LL3_02074 SM00342 helix_turn_helix, arabinose operon control protein LL3_02076 SM00849 Metallo-beta-lactamase superfamily LL3_02079 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor LL3_02088 SM00257 Lysin motif LL3_02090 SM00341 Helicase and RNase D C-terminal LL3_02090 SM00487 DEAD-like helicases superfamily LL3_02090 SM00490 helicase superfamily c-terminal domain LL3_02090 SM00956 LL3_02090 LL3_02107 SM00849 Metallo-beta-lactamase superfamily LL3_02109 SM00861 Transketolase, pyrimidine binding domain LL3_02110 SM00327 von Willebrand factor (vWF) type A domain LL3_02111 SM00382 ATPases associated with a variety of cellular activities LL3_02113 SM00257 Lysin motif LL3_02136 SM00345 helix_turn_helix gluconate operon transcriptional repressor LL3_02136 SM00866 LL3_02136 LL3_02137 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LL3_02137 SM00245 tail specific protease LL3_02144 SM00014 Acid phosphatase homologues LL3_02154 SM00882 Coenzyme A transferase LL3_02155 SM00882 Coenzyme A transferase LL3_02158 SM00871 Bacterial transcription activator, effector binding domain LL3_02173 SM00857 Resolvase, N terminal domain LL3_02177 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_02192 SM00567 E-Z type HEAT repeats LL3_02192 SM00932 Scaffold protein Nfu/NifU N terminal LL3_02193 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LL3_02198 SM00357 Cold shock protein domain LL3_02206 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs LL3_02206 SM00475 5'-3' exonuclease LL3_02245 SM00465 GIY-YIG type nucleases (URI domain) LL3_02245 SM00496 Intron-encoded nuclease repeat 2 LL3_02268 SM00481 DNA polymerase alpha chain like domain LL3_02277 SM00710 Parallel beta-helix repeats LL3_02306 SM00530 Helix-turn-helix XRE-family like proteins LL3_02319 SM00530 Helix-turn-helix XRE-family like proteins LL3_02337 SM00864 Tubulin/FtsZ family, GTPase domain LL3_02340 SM00411 bacterial (prokaryotic) histone like domain LL3_02375 SM00710 Parallel beta-helix repeats LL3_02376 SM00287 Bacterial SH3 domain homologues LL3_02376 SM00644 LL3_02376 LL3_02380 SM00028 Tetratricopeptide repeats LL3_02388 SM00860 SMI1 / KNR4 family LL3_02390 SM00318 Staphylococcal nuclease homologues LL3_02390 SM00894 Excalibur calcium-binding domain LL3_02391 SM00857 Resolvase, N terminal domain LL3_02395 SM00491 LL3_02395 LL3_02399 SM00981 LL3_02399 LL3_02403 SM00487 DEAD-like helicases superfamily LL3_02403 SM00490 helicase superfamily c-terminal domain LL3_02413 SM00060 Fibronectin type 3 domain LL3_02415 SM00478 endonuclease III LL3_02415 SM00525 LL3_02415 LL3_02422 SM00479 LL3_02422 LL3_02422 SM00487 DEAD-like helicases superfamily LL3_02422 SM00491 LL3_02422 LL3_02431 SM00851 MGS-like domain LL3_02435 SM00835 Cupin LL3_02442 SM00914 LL3_02442 LL3_02443 SM00028 Tetratricopeptide repeats LL3_02457 SM00138 Methyltransferase, chemotaxis proteins LL3_02458 SM00562 LL3_02458 LL3_02464 SM00411 bacterial (prokaryotic) histone like domain LL3_02472 SM00316 Ribosomal protein S1-like RNA-binding domain LL3_02480 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LL3_02484 SM00257 Lysin motif LL3_02486 SM00487 DEAD-like helicases superfamily LL3_02486 SM00490 helicase superfamily c-terminal domain LL3_02495 SM00091 PAS domain LL3_02495 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LL3_02495 SM00387 Histidine kinase-like ATPases LL3_02495 SM00388 His Kinase A (phosphoacceptor) domain LL3_02496 SM00448 cheY-homologous receiver domain LL3_02496 SM00862 Transcriptional regulatory protein, C terminal LL3_02500 SM00363 S4 RNA-binding domain LL3_02530 SM00387 Histidine kinase-like ATPases LL3_02532 SM00936 Penicillin-binding protein 5, C-terminal domain LL3_02541 SM00919 Malic enzyme, NAD binding domain LL3_02541 SM01274 LL3_02541 LL3_02544 SM00870 LL3_02544 LL3_02545 SM00530 Helix-turn-helix XRE-family like proteins LL3_02565 SM00849 Metallo-beta-lactamase superfamily LL3_02575 SM01350 LL3_02575 LL3_02584 SM00382 ATPases associated with a variety of cellular activities LL3_02586 SM00062 Bacterial periplasmic substrate-binding proteins LL3_02586 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. LL3_02588 SM00046 Diacylglycerol kinase catalytic domain (presumed) LL3_02590 SM00861 Transketolase, pyrimidine binding domain LL3_02594 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LL3_02596 SM00091 PAS domain LL3_02596 SM00382 ATPases associated with a variety of cellular activities LL3_02605 SM00646 LL3_02605 LL3_02609 SM00530 Helix-turn-helix XRE-family like proteins LL3_02615 SM01005 Alanine racemase, C-terminal domain LL3_02617 SM00448 cheY-homologous receiver domain LL3_02618 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LL3_02621 SM00363 S4 RNA-binding domain LL3_02622 SM00861 Transketolase, pyrimidine binding domain LL3_02630 SM00878 Biotin carboxylase C-terminal domain LL3_02639 SM00382 ATPases associated with a variety of cellular activities LL3_02641 SM00841 Elongation factor P, C-terminal LL3_02641 SM01185 LL3_02641 LL3_02647 SM00529 Helix-turn-helix diphteria tox regulatory element LL3_02650 SM00450 Rhodanese Homology Domain LL3_02654 SM00487 DEAD-like helicases superfamily LL3_02654 SM00490 helicase superfamily c-terminal domain LL3_02658 SM00530 Helix-turn-helix XRE-family like proteins LL3_02670 SM00382 ATPases associated with a variety of cellular activities LL3_02673 SM01091 Transporter associated domain LL3_02677 SM00849 Metallo-beta-lactamase superfamily LL3_02681 SM00631 LL3_02681 LL3_02691 SM00382 ATPases associated with a variety of cellular activities LL3_02692 SM00382 ATPases associated with a variety of cellular activities LL3_02701 SM00257 Lysin motif LL3_02708 SM00518 AP endonuclease family 2 LL3_02709 SM00487 DEAD-like helicases superfamily LL3_02709 SM00490 helicase superfamily c-terminal domain LL3_02716 SM00400 zinc finger LL3_02716 SM00493 LL3_02716 LL3_02719 SM00116 Domain in cystathionine beta-synthase and other proteins. LL3_02728 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LL3_02738 SM00729 Elongator protein 3, MiaB family, Radical SAM LL3_02741 SM00271 DnaJ molecular chaperone homology domain LL3_02745 SM00729 Elongator protein 3, MiaB family, Radical SAM LL3_02746 SM00838 Elongation factor G C-terminus LL3_02755 SM00278 Helix-hairpin-helix DNA-binding motif class 1 LL3_02759 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LL3_02761 SM01103 LL3_02761 LL3_02769 SM00644 LL3_02769 LL3_02794 SM00849 Metallo-beta-lactamase superfamily LL3_02808 SM00926 Molybdopterin oxidoreductase Fe4S4 domain LL3_02808 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LL3_02825 SM00732 Likely ribonuclease with RNase H fold. LL3_02827 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain LL3_02829 SM00382 ATPases associated with a variety of cellular activities LL3_02830 SM00062 Bacterial periplasmic substrate-binding proteins LL3_02830 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. LL3_02836 SM00382 ATPases associated with a variety of cellular activities LL3_02837 SM00028 Tetratricopeptide repeats LL3_02841 SM00382 ATPases associated with a variety of cellular activities LL3_02848 SM00287 Bacterial SH3 domain homologues LL3_02848 SM00646 LL3_02848 LL3_02850 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LL3_02850 SM00954 Region found in RelA / SpoT proteins LL3_02860 SM01323 LL3_02860 LL3_02864 SM00382 ATPases associated with a variety of cellular activities LL3_02865 SM00278 Helix-hairpin-helix DNA-binding motif class 1 LL3_02869 SM00257 Lysin motif LL3_02878 SM01317 LL3_02878 LL3_02897 SM00257 Lysin motif LL3_02899 SM01004 Delta-aminolevulinic acid dehydratase LL3_02906 SM00382 ATPases associated with a variety of cellular activities LL3_02906 SM00464 Found in ATP-dependent protease La (LON) LL3_02907 SM00382 ATPases associated with a variety of cellular activities LL3_02908 SM00382 ATPases associated with a variety of cellular activities LL3_02908 SM00994 ClpX C4-type zinc finger LL3_02908 SM01086 C-terminal, D2-small domain, of ClpB protein LL3_02914 SM01329 LL3_02914 LL3_02915 SM00917 LeuA allosteric (dimerisation) domain LL3_02925 SM00909 Sporulation and spore germination LL3_02927 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_02929 SM00421 helix_turn_helix, Lux Regulon LL3_02936 SM00465 GIY-YIG type nucleases (URI domain) LL3_02938 SM00813 Alpha-L-arabinofuranosidase C-terminus LL3_02939 SM00893 Electron transfer flavoprotein domain LL3_02940 SM00893 Electron transfer flavoprotein domain LL3_02947 SM00463 Small MutS-related domain LL3_02947 SM00533 DNA-binding domain of DNA mismatch repair MUTS family LL3_02947 SM00534 ATPase domain of DNA mismatch repair MUTS family LL3_02948 SM00278 Helix-hairpin-helix DNA-binding motif class 1 LL3_02948 SM00481 DNA polymerase alpha chain like domain LL3_02948 SM00483 DNA polymerase X family LL3_02952 SM00873 B3/4 domain LL3_02952 SM00874 tRNA synthetase B5 domain LL3_02952 SM00896 Ferredoxin-fold anticodon binding domain LL3_02955 SM00967 RNA 2'-O ribose methyltransferase substrate binding LL3_02961 SM00813 Alpha-L-arabinofuranosidase C-terminus LL3_02967 SM01007 Class II Aldolase and Adducin N-terminal domain LL3_02978 SM00448 cheY-homologous receiver domain LL3_02978 SM00850 LytTr DNA-binding domain LL3_02979 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. LL3_02979 SM00387 Histidine kinase-like ATPases LL3_02982 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain LL3_02986 SM00382 ATPases associated with a variety of cellular activities LL3_02990 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LL3_02996 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain LL3_02996 SM01232 LL3_02996 LL3_02997 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs LL3_02997 SM00474 3'-5' exonuclease LL3_02997 SM00475 5'-3' exonuclease LL3_02997 SM00482 DNA polymerase A domain LL3_02998 SM00091 PAS domain LL3_02998 SM00387 Histidine kinase-like ATPases LL3_02998 SM00388 His Kinase A (phosphoacceptor) domain LL3_02999 SM00448 cheY-homologous receiver domain LL3_02999 SM00862 Transcriptional regulatory protein, C terminal LL3_03001 SM01329 LL3_03001 LL3_03011 SM00919 Malic enzyme, NAD binding domain LL3_03011 SM01274 LL3_03011 LL3_03012 SM00481 DNA polymerase alpha chain like domain LL3_03018 SM00116 Domain in cystathionine beta-synthase and other proteins. LL3_03019 SM00849 Metallo-beta-lactamase superfamily LL3_03024 SM00852 Probable molybdopterin binding domain LL3_03036 SM00981 LL3_03036 LL3_03044 SM00267 diguanylate cyclase LL3_03046 SM00363 S4 RNA-binding domain LL3_03046 SM01390 LL3_03046 LL3_03057 SM00363 S4 RNA-binding domain LL3_03060 SM00116 Domain in cystathionine beta-synthase and other proteins. LL3_03064 SM00354 helix_turn _helix lactose operon repressor LL3_03066 SM00830 Chorismate mutase type II LL3_03072 SM00382 ATPases associated with a variety of cellular activities LL3_03072 SM00843 LL3_03072 LL3_03079 SM00919 Malic enzyme, NAD binding domain LL3_03079 SM01274 LL3_03079 LL3_03080 SM00849 Metallo-beta-lactamase superfamily LL3_03084 SM00046 Diacylglycerol kinase catalytic domain (presumed) LL3_03091 SM00382 ATPases associated with a variety of cellular activities LL3_03093 SM00363 S4 RNA-binding domain LL3_03100 SM00354 helix_turn _helix lactose operon repressor LL3_03106 SM00450 Rhodanese Homology Domain LL3_03110 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) LL3_03110 SM00091 PAS domain LL3_03114 SM00382 ATPases associated with a variety of cellular activities LL3_03115 SM00387 Histidine kinase-like ATPases LL3_03116 SM00448 cheY-homologous receiver domain LL3_03116 SM00862 Transcriptional regulatory protein, C terminal LL3_03118 SM00382 ATPases associated with a variety of cellular activities LL3_03122 SM00382 ATPases associated with a variety of cellular activities LL3_03123 SM00345 helix_turn_helix gluconate operon transcriptional repressor LL3_03126 SM00729 Elongator protein 3, MiaB family, Radical SAM LL3_03139 SM00382 ATPases associated with a variety of cellular activities LL3_03147 SM01234 LL3_03147 LL3_03148 SM00947 Carbonic anhydrase LL3_03154 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain LL3_03164 SM00244 prohibitin homologues LL3_03173 SM00047 Lysozyme subfamily 2 LL3_03180 SM00028 Tetratricopeptide repeats LL3_03186 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LL3_03186 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LL3_03186 SM00319 Homologues of the ligand binding domain of Tar LL3_03187 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LL3_03187 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LL3_03187 SM00319 Homologues of the ligand binding domain of Tar LL3_03188 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LL3_03188 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LL3_03188 SM00319 Homologues of the ligand binding domain of Tar LL3_03189 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LL3_03189 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LL3_03189 SM00319 Homologues of the ligand binding domain of Tar LL3_03193 SM00642 Alpha-amylase domain LL3_03195 SM00116 Domain in cystathionine beta-synthase and other proteins. LL3_03195 SM01091 Transporter associated domain LL3_03208 SM00316 Ribosomal protein S1-like RNA-binding domain LL3_03210 SM00344 helix_turn_helix ASNC type LL3_03214 SM00387 Histidine kinase-like ATPases LL3_03214 SM00388 His Kinase A (phosphoacceptor) domain LL3_03215 SM01298 LL3_03215 LL3_03216 SM00479 LL3_03216 LL3_03221 SM00091 PAS domain LL3_03221 SM00387 Histidine kinase-like ATPases LL3_03222 SM00448 cheY-homologous receiver domain LL3_03225 SM00382 ATPases associated with a variety of cellular activities LL3_03237 SM00421 helix_turn_helix, Lux Regulon LL3_03237 SM00448 cheY-homologous receiver domain LL3_03238 SM00387 Histidine kinase-like ATPases LL3_03244 SM00052 Putative diguanylate phosphodiesterase LL3_03252 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LL3_03262 SM01002 Alanine dehydrogenase/PNT, C-terminal domain LL3_03262 SM01003 Alanine dehydrogenase/PNT, N-terminal domain LL3_03264 SM00923 MbtH-like protein LL3_03265 SM00823 Phosphopantetheine attachment site LL3_03265 SM00824 Thioesterase LL3_03283 SM01240 LL3_03283 LL3_03286 SM00382 ATPases associated with a variety of cellular activities LL3_03311 SM00729 Elongator protein 3, MiaB family, Radical SAM LL3_03327 SM00382 ATPases associated with a variety of cellular activities LL3_03328 SM00345 helix_turn_helix gluconate operon transcriptional repressor LL3_03328 SM00866 LL3_03328 LL3_03334 SM00422 helix_turn_helix, mercury resistance LL3_03336 SM00752 Horizontally Transferred TransMembrane Domain LL3_03339 SM00465 GIY-YIG type nucleases (URI domain) LL3_03346 SM00644 LL3_03346 LL3_03351 SM00710 Parallel beta-helix repeats LL3_03352 SM00047 Lysozyme subfamily 2 LL3_03372 SM00990 LL3_03372 LL3_03375 SM00482 DNA polymerase A domain LL3_03382 SM00530 Helix-turn-helix XRE-family like proteins LL3_03389 SM00382 ATPases associated with a variety of cellular activities LL3_03394 SM00382 ATPases associated with a variety of cellular activities LL3_03394 SM00930 LL3_03394 LL3_03398 SM00493 LL3_03398 LL3_03409 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_03409 SM00529 Helix-turn-helix diphteria tox regulatory element LL3_03412 SM00530 Helix-turn-helix XRE-family like proteins LL3_03415 SM00382 ATPases associated with a variety of cellular activities LL3_03418 SM00822 LL3_03418 LL3_03420 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LL3_03422 SM00448 cheY-homologous receiver domain LL3_03422 SM00862 Transcriptional regulatory protein, C terminal LL3_03423 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LL3_03423 SM00387 Histidine kinase-like ATPases LL3_03423 SM00388 His Kinase A (phosphoacceptor) domain LL3_03431 SM00421 helix_turn_helix, Lux Regulon LL3_03431 SM00448 cheY-homologous receiver domain LL3_03432 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LL3_03432 SM00387 Histidine kinase-like ATPases LL3_03439 SM00382 ATPases associated with a variety of cellular activities LL3_03444 SM00387 Histidine kinase-like ATPases LL3_03444 SM00388 His Kinase A (phosphoacceptor) domain LL3_03445 SM00448 cheY-homologous receiver domain LL3_03445 SM00862 Transcriptional regulatory protein, C terminal LL3_03450 SM00835 Cupin LL3_03452 SM00382 ATPases associated with a variety of cellular activities LL3_03465 SM00421 helix_turn_helix, Lux Regulon LL3_03465 SM00448 cheY-homologous receiver domain LL3_03467 SM00382 ATPases associated with a variety of cellular activities LL3_03489 SM00382 ATPases associated with a variety of cellular activities LL3_03493 SM00062 Bacterial periplasmic substrate-binding proteins LL3_03499 SM00316 Ribosomal protein S1-like RNA-binding domain LL3_03499 SM00357 Cold shock protein domain LL3_03499 SM00955 LL3_03499 LL3_03502 SM00530 Helix-turn-helix XRE-family like proteins LL3_03503 SM00530 Helix-turn-helix XRE-family like proteins LL3_03504 SM00530 Helix-turn-helix XRE-family like proteins LL3_03506 SM00387 Histidine kinase-like ATPases LL3_03506 SM00388 His Kinase A (phosphoacceptor) domain LL3_03507 SM00448 cheY-homologous receiver domain LL3_03507 SM00862 Transcriptional regulatory protein, C terminal LL3_03510 SM00382 ATPases associated with a variety of cellular activities LL3_03514 SM00116 Domain in cystathionine beta-synthase and other proteins. LL3_03514 SM00382 ATPases associated with a variety of cellular activities LL3_03519 SM00116 Domain in cystathionine beta-synthase and other proteins. LL3_03519 SM00382 ATPases associated with a variety of cellular activities LL3_03533 SM00984 UDP binding domain LL3_03536 SM01192 LL3_03536 LL3_03536 SM01193 LL3_03536 LL3_03541 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LL3_03545 SM00345 helix_turn_helix gluconate operon transcriptional repressor LL3_03560 SM00345 helix_turn_helix gluconate operon transcriptional repressor LL3_03560 SM00895 LL3_03560 LL3_03579 SM00530 Helix-turn-helix XRE-family like proteins LL3_03584 SM00849 Metallo-beta-lactamase superfamily LL3_03594 SM00640 Glycosyl hydrolases family 32 LL3_03597 SM00354 helix_turn _helix lactose operon repressor LL3_03606 SM00947 Carbonic anhydrase LL3_03621 SM00028 Tetratricopeptide repeats LL3_03622 SM00387 Histidine kinase-like ATPases LL3_03622 SM00388 His Kinase A (phosphoacceptor) domain LL3_03623 SM00448 cheY-homologous receiver domain LL3_03623 SM00862 Transcriptional regulatory protein, C terminal LL3_03624 SM00382 ATPases associated with a variety of cellular activities LL3_03640 SM00345 helix_turn_helix gluconate operon transcriptional repressor LL3_03640 SM00866 LL3_03640 LL3_03648 SM00382 ATPases associated with a variety of cellular activities LL3_03649 SM00487 DEAD-like helicases superfamily LL3_03649 SM00490 helicase superfamily c-terminal domain LL3_03656 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LL3_03658 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LL3_03658 SM00245 tail specific protease LL3_03659 SM00710 Parallel beta-helix repeats LL3_03659 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses LL3_03661 SM00382 ATPases associated with a variety of cellular activities LL3_03664 SM00937 LL3_03664 LL3_03665 SM00957 SecA DEAD-like domain LL3_03665 SM00958 SecA preprotein cross-linking domain LL3_03682 SM00487 DEAD-like helicases superfamily LL3_03682 SM00490 helicase superfamily c-terminal domain LL3_03684 SM00421 helix_turn_helix, Lux Regulon LL3_03684 SM00448 cheY-homologous receiver domain LL3_03685 SM00387 Histidine kinase-like ATPases LL3_03693 SM00984 UDP binding domain LL3_03697 SM00646 LL3_03697 LL3_03704 SM00382 ATPases associated with a variety of cellular activities LL3_03711 SM00047 Lysozyme subfamily 2 LL3_03711 SM00287 Bacterial SH3 domain homologues LL3_03725 SM00854 Bacterial capsule synthesis protein PGA_cap LL3_03733 SM00354 helix_turn _helix lactose operon repressor LL3_03736 SM00382 ATPases associated with a variety of cellular activities LL3_03739 SM00287 Bacterial SH3 domain homologues LL3_03751 SM00903 Flavin reductase like domain LL3_03755 SM00344 helix_turn_helix ASNC type LL3_03760 SM00860 SMI1 / KNR4 family LL3_03769 SM00984 UDP binding domain LL3_03776 SM00487 DEAD-like helicases superfamily LL3_03776 SM00490 helicase superfamily c-terminal domain LL3_03778 SM00420 helix_turn_helix, Deoxyribose operon repressor LL3_03778 SM01134 LL3_03778 LL3_03790 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_03796 SM00938 Nitrogen regulatory protein P-II LL3_03798 SM00014 Acid phosphatase homologues LL3_03805 SM00155 Phospholipase D. Active site motifs. LL3_03816 SM00028 Tetratricopeptide repeats LL3_03817 SM00729 Elongator protein 3, MiaB family, Radical SAM LL3_03820 SM00327 von Willebrand factor (vWF) type A domain LL3_03821 SM00327 von Willebrand factor (vWF) type A domain LL3_03828 SM00382 ATPases associated with a variety of cellular activities LL3_03841 SM00226 Low molecular weight phosphatase family LL3_03849 SM00937 LL3_03849 LL3_03853 SM00919 Malic enzyme, NAD binding domain LL3_03853 SM01274 LL3_03853 LL3_03856 SM00357 Cold shock protein domain LL3_03856 SM00382 ATPases associated with a variety of cellular activities LL3_03856 SM00959 Rho termination factor, N-terminal domain LL3_03861 SM00448 cheY-homologous receiver domain LL3_03866 SM00155 Phospholipase D. Active site motifs. LL3_03869 SM00382 ATPases associated with a variety of cellular activities LL3_03870 SM00155 Phospholipase D. Active site motifs. LL3_03874 SM00926 Molybdopterin oxidoreductase Fe4S4 domain LL3_03877 SM00100 Cyclic nucleotide-monophosphate binding domain LL3_03877 SM00419 helix_turn_helix, cAMP Regulatory protein LL3_03879 SM00836 DALR anticodon binding domain LL3_03879 SM01016 Arginyl tRNA synthetase N terminal dom LL3_03883 SM00028 Tetratricopeptide repeats LL3_03892 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_03895 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LL3_03925 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LL3_03933 SM00858 LL3_03933 LL3_03942 SM00986 Uracil DNA glycosylase superfamily LL3_03942 SM00987 UreE urease accessory protein, C-terminal domain LL3_03947 SM00640 Glycosyl hydrolases family 32 LL3_03949 SM01061 CAT RNA binding domain LL3_03956 SM00886 Stress responsive A/B Barrel Domain LL3_03986 SM00422 helix_turn_helix, mercury resistance LL3_03988 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase LL3_03995 SM00954 Region found in RelA / SpoT proteins LL3_04015 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor LL3_04024 SM01060 LL3_04024 LL3_04028 SM00382 ATPases associated with a variety of cellular activities LL3_04029 SM00382 ATPases associated with a variety of cellular activities LL3_04034 SM00382 ATPases associated with a variety of cellular activities LL3_04052 SM01060 LL3_04052 LL3_04055 SM01061 CAT RNA binding domain LL3_04057 SM00487 DEAD-like helicases superfamily LL3_04057 SM00490 helicase superfamily c-terminal domain LL3_04068 SM00656 LL3_04068 LL3_04086 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain LL3_04088 SM01133 LL3_04088 LL3_04099 SM00382 ATPases associated with a variety of cellular activities LL3_04100 SM00387 Histidine kinase-like ATPases LL3_04101 SM00448 cheY-homologous receiver domain LL3_04101 SM00862 Transcriptional regulatory protein, C terminal LL3_04112 SM00420 helix_turn_helix, Deoxyribose operon repressor LL3_04112 SM01134 LL3_04112 LL3_04115 SM00387 Histidine kinase-like ATPases LL3_04117 SM00421 helix_turn_helix, Lux Regulon LL3_04117 SM00448 cheY-homologous receiver domain LL3_04122 SM00564 beta-propeller repeat LL3_04124 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor LL3_04136 SM00857 Resolvase, N terminal domain LL3_04146 SM00155 Phospholipase D. Active site motifs. LL3_04149 SM01092 CO dehydrogenase flavoprotein C-terminal domain LL3_04150 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LL3_04166 SM00028 Tetratricopeptide repeats LL3_04171 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor LL3_04172 SM00382 ATPases associated with a variety of cellular activities LL3_04175 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LL3_04175 SM00387 Histidine kinase-like ATPases LL3_04175 SM00388 His Kinase A (phosphoacceptor) domain LL3_04176 SM00448 cheY-homologous receiver domain LL3_04176 SM00862 Transcriptional regulatory protein, C terminal LL3_04178 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LL3_04179 SM00849 Metallo-beta-lactamase superfamily LL3_04182 SM00091 PAS domain LL3_04182 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LL3_04182 SM00387 Histidine kinase-like ATPases LL3_04182 SM00388 His Kinase A (phosphoacceptor) domain LL3_04183 SM00448 cheY-homologous receiver domain LL3_04183 SM00862 Transcriptional regulatory protein, C terminal LL3_04186 SM00788 Adenylosuccinate synthetase LL3_04189 SM00382 ATPases associated with a variety of cellular activities LL3_04201 SM00267 diguanylate cyclase LL3_04206 SM01131 LL3_04206 LL3_04209 SM00640 Glycosyl hydrolases family 32 LL3_04210 SM00345 helix_turn_helix gluconate operon transcriptional repressor LL3_04210 SM00895 LL3_04210 LL3_04216 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_04219 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_04230 SM00354 helix_turn _helix lactose operon repressor LL3_04233 SM00342 helix_turn_helix, arabinose operon control protein LL3_04238 SM00926 Molybdopterin oxidoreductase Fe4S4 domain LL3_04243 SM00470 ParB-like nuclease domain LL3_04245 SM00470 ParB-like nuclease domain LL3_04247 SM01228 LL3_04247 LL3_04249 SM00393 Putative single-stranded nucleic acids-binding domain LL3_04249 SM01245 LL3_04249 LL3_p00005 SM00028 Tetratricopeptide repeats