locus-tag	class	description
AVM03_00030	COG2996	Protein conserved in bacteria
AVM03_00040	COG0840	transmembrane signaling receptor activity
AVM03_00045	COG1307	EDD domain protein, DegV family
AVM03_00050	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
AVM03_00065	COG0561	phosphatase activity
AVM03_00070	COG1073	alpha beta
AVM03_00075	COG2151	metal-sulfur cluster biosynthetic enzyme
AVM03_00090	COG0277	FAD linked oxidase domain protein
AVM03_00095	COG2271	Major facilitator Superfamily
AVM03_00115	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AVM03_00120	COG0505	Belongs to the CarA family
AVM03_00125	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
AVM03_00130	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
AVM03_00150	COG2267	carboxylic ester hydrolase activity
AVM03_00160	COG1744	ABC transporter substrate-binding protein PnrA-like
AVM03_00175	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
AVM03_00180	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
AVM03_00185	COG5504	Zn-dependent protease
AVM03_00190	COG0444	Belongs to the ABC transporter superfamily
AVM03_00195	COG4608	Belongs to the ABC transporter superfamily
AVM03_00205	COG0601	transmembrane transport
AVM03_00210	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AVM03_00230	COG0180	Tryptophanyl-tRNA synthetase
AVM03_00235	COG4166	transmembrane transport
AVM03_00240	COG0601	transmembrane transport
AVM03_00245	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AVM03_00250	COG0444	Belongs to the ABC transporter superfamily
AVM03_00255	COG4608	Belongs to the ABC transporter superfamily
AVM03_00265	COG0456	acetyltransferase
AVM03_00270	COG1393	Belongs to the ArsC family
AVM03_00275	COG0861	Integral membrane protein TerC family
AVM03_00280	COG4862	establishment of competence for transformation
AVM03_00285	COG4469	Competence protein
AVM03_00290	COG1164	Oligoendopeptidase f
AVM03_00300	COG2346	COG2346, Truncated hemoglobins
AVM03_00305	COG0741	lytic transglycosylase activity
AVM03_00310	COG4116	CYTH
AVM03_00320	COG2357	RelA SpoT domain protein
AVM03_00325	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
AVM03_00330	COG0564	pseudouridine synthase activity
AVM03_00340	COG0475	glutathione-regulated potassium exporter activity
AVM03_00340	COG0569	domain protein
AVM03_00345	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
AVM03_00350	COG0352	thiamine-phosphate diphosphorylase activity
AVM03_00355	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AVM03_00360	COG2104	thiamine diphosphate biosynthetic process
AVM03_00370	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
AVM03_00375	COG0351	phosphomethylpyrimidine kinase
AVM03_00380	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
AVM03_00435	COG0210	DNA helicase
AVM03_00455	COG1131	(ABC) transporter
AVM03_00465	COG2153	protein acetylation
AVM03_00475	COG2382	esterase
AVM03_00480	COG0626	cystathionine gamma-synthase activity
AVM03_00485	COG0626	cystathionine gamma-synthase activity
AVM03_00535	COG0346	lactoylglutathione lyase activity
AVM03_00540	COG2367	Beta-lactamase
AVM03_00545	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
AVM03_00555	COG1846	Transcriptional regulator
AVM03_00565	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
AVM03_00570	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
AVM03_00575	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
AVM03_00580	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
AVM03_00580	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
AVM03_00585	COG1447	Phosphotransferase system cellobiose-specific component IIA
AVM03_00595	COG1349	DNA-binding transcription factor activity
AVM03_00615	COG1285	pathogenesis
AVM03_00620	COG2205	protein histidine kinase activity
AVM03_00630	COG3383	formate dehydrogenase (NAD+) activity
AVM03_00635	COG2427	Protein of unknown function (DUF1641)
AVM03_00640	COG2124	cytochrome p450
AVM03_00645	COG1819	glycosyl
AVM03_00655	COG1587	Uroporphyrinogen-III synthase
AVM03_00660	COG0390	transport system, permease component
AVM03_00665	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
AVM03_00670	COG0697	spore germination
AVM03_00675	COG4297	protein containing double-stranded beta helix domain
AVM03_00685	COG1252	NADH dehydrogenase
AVM03_00695	COG2211	Major facilitator Superfamily
AVM03_00700	COG1609	Transcriptional regulator
AVM03_00705	COG0246	Mannitol dehydrogenase
AVM03_00710	COG2721	sulfolactate sulfo-lyase activity
AVM03_00715	COG0745	RESPONSE REGULATOR receiver
AVM03_00720	COG2770	Histidine kinase
AVM03_00720	COG2205	protein histidine kinase activity
AVM03_00725	COG1121	(ABC) transporter
AVM03_00735	COG0730	response to heat
AVM03_00740	COG2318	DinB family
AVM03_00745	COG0457	Tetratricopeptide repeat
AVM03_00755	COG5632	N-Acetylmuramoyl-L-alanine amidase
AVM03_00755	COG3409	Peptidoglycan-binding domain 1 protein
AVM03_00755	COG1388	LysM domain
AVM03_00765	COG4195	phage-related replication protein
AVM03_00770	COG2856	Zn peptidase
AVM03_00775	COG1396	sequence-specific DNA binding
AVM03_00785	COG1522	sequence-specific DNA binding
AVM03_00790	COG1484	DNA-dependent DNA replication
AVM03_00805	COG1595	DNA-templated transcription, initiation
AVM03_00810	COG3728	DNA packaging
AVM03_00810	COG5484	DNA packaging
AVM03_00815	COG1783	phage Terminase large subunit
AVM03_00820	COG5518	Phage portal protein
AVM03_00825	COG0338	D12 class N6 adenine-specific DNA methyltransferase
AVM03_00830	COG4653	Phage capsid family
AVM03_00875	COG5412	phage tail tape measure protein
AVM03_00875	COG3953	SLT domain
AVM03_00875	COG5412	phage tail tape measure protein
AVM03_00875	COG5412	phage tail tape measure protein
AVM03_00875	COG3953	SLT domain
AVM03_00875	COG3953	SLT domain
AVM03_00880	COG1652	LysM domain
AVM03_00885	COG4193	domain, Protein
AVM03_00895	COG3628	GPW Gp25 family protein
AVM03_00900	COG3299	homolog of phage Mu protein gp47
AVM03_00905	COG3778	Protein conserved in bacteria
AVM03_00945	COG3409	Peptidoglycan-binding domain 1 protein
AVM03_00945	COG5632	N-Acetylmuramoyl-L-alanine amidase
AVM03_00960	COG0306	phosphate transporter
AVM03_00965	COG1392	Phosphate transport regulator
AVM03_00970	COG0531	amino acid
AVM03_00975	COG0346	lactoylglutathione lyase activity
AVM03_00980	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
AVM03_00985	COG0463	Glycosyl transferase, family 2
AVM03_00990	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AVM03_00995	COG0477	Major facilitator Superfamily
AVM03_01000	COG2362	D-Aminopeptidase
AVM03_01005	COG0601	transmembrane transport
AVM03_01010	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AVM03_01015	COG0444	Belongs to the ABC transporter superfamily
AVM03_01020	COG4166	transmembrane transport
AVM03_01025	COG1619	proteins homologs of microcin C7 resistance protein MccF
AVM03_01030	COG4948	Mandelate Racemase Muconate Lactonizing
AVM03_01035	COG0791	NLP P60 protein
AVM03_01040	COG4608	Belongs to the ABC transporter superfamily
AVM03_01045	COG2706	6-phosphogluconolactonase activity
AVM03_01050	COG1834	amidinotransferase
AVM03_01055	COG1607	acyl-coa hydrolase
AVM03_01060	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AVM03_01065	COG2076	Multidrug Resistance protein
AVM03_01070	COG2076	Multidrug Resistance protein
AVM03_01075	COG0788	formyltetrahydrofolate deformylase activity
AVM03_01080	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
AVM03_01090	COG1764	response to oxidative stress
AVM03_01095	COG1846	Transcriptional regulator
AVM03_01100	COG1764	response to oxidative stress
AVM03_01115	COG0457	Tetratricopeptide repeat
AVM03_01115	COG0463	Glycosyl transferase, family 2
AVM03_01125	COG2814	Major facilitator Superfamily
AVM03_01130	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AVM03_01140	COG1404	Belongs to the peptidase S8 family
AVM03_01145	COG1366	Belongs to the anti-sigma-factor antagonist family
AVM03_01150	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
AVM03_01155	COG1122	ATPase activity
AVM03_01160	COG4721	ABC-type cobalt transport system, permease component
AVM03_01165	COG3858	chitin binding
AVM03_01165	COG1388	LysM domain
AVM03_01170	COG2239	Acts as a magnesium transporter
AVM03_01175	COG0789	Transcriptional regulator
AVM03_01185	COG1846	Transcriptional regulator
AVM03_01190	COG0726	polysaccharide deacetylase
AVM03_01195	COG1793	dna ligase
AVM03_01195	COG3285	dna ligase
AVM03_01200	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
AVM03_01210	COG0586	Pfam SNARE associated Golgi protein
AVM03_01215	COG0861	Integral membrane protein TerC family
AVM03_01220	COG1191	sigma factor activity
AVM03_01245	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
AVM03_01250	COG2323	membrane
AVM03_01255	COG3594	Acyltransferase
AVM03_01260	COG5002	protein histidine kinase activity
AVM03_01265	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
AVM03_01280	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AVM03_01285	COG0436	Aminotransferase
AVM03_01315	COG3852	Histidine kinase
AVM03_01320	COG1846	Transcriptional regulator
AVM03_01325	COG1360	Flagellar Motor Protein
AVM03_01330	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
AVM03_01335	COG0542	response to heat
AVM03_01340	COG3949	Membrane
AVM03_01355	COG0720	synthase
AVM03_01360	COG0602	queuosine metabolic process
AVM03_01375	COG4873	Protein conserved in bacteria
AVM03_01385	COG3773	Cell wall hydrolase
AVM03_01390	COG2244	polysaccharide biosynthetic process
AVM03_01395	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AVM03_01400	COG2217	Heavy metal translocating P-type atpase
AVM03_01405	COG0006	proline dipeptidase activity
AVM03_01410	COG1609	Transcriptional regulator
AVM03_01415	COG3711	transcriptional antiterminator
AVM03_01420	COG1263	PTS System
AVM03_01420	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AVM03_01420	COG2190	(PTS) system
AVM03_01425	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
AVM03_01430	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
AVM03_01440	COG1533	DNA photolyase activity
AVM03_01445	COG0840	transmembrane signaling receptor activity
AVM03_01450	COG2084	Dehydrogenase
AVM03_01455	COG2340	Cysteine-rich secretory protein family
AVM03_01460	COG0768	penicillin binding
AVM03_01465	COG4191	Histidine kinase
AVM03_01470	COG0436	Aminotransferase
AVM03_01475	COG0835	chemotaxis
AVM03_01475	COG0784	Response regulator, receiver
AVM03_01485	COG2814	Major facilitator Superfamily
AVM03_01490	COG1376	ErfK ybiS ycfS ynhG family protein
AVM03_01495	COG1408	metallophosphoesterase
AVM03_01500	COG1028	Short-chain dehydrogenase reductase Sdr
AVM03_01510	COG2200	EAL domain
AVM03_01515	COG4703	Protein of unknown function (DUF1797)
AVM03_01520	COG1978	Selenoprotein B, glycine betaine sarcosine D-proline reductase family
AVM03_01530	COG0517	IMP dehydrogenase activity
AVM03_01535	COG0583	DNA-binding transcription factor activity
AVM03_01540	COG0716	FMN binding
AVM03_01550	COG0716	FMN binding
AVM03_01570	COG0668	transmembrane transport
AVM03_01575	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AVM03_01595	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
AVM03_01600	COG0303	'Molybdopterin
AVM03_01605	COG1763	Mo-molybdopterin cofactor biosynthetic process
AVM03_01610	COG0314	molybdopterin synthase activity
AVM03_01615	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
AVM03_01625	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AVM03_01630	COG1136	(ABC) transporter
AVM03_01635	COG0577	efflux transmembrane transporter activity
AVM03_01640	COG1349	DNA-binding transcription factor activity
AVM03_01645	COG1105	Belongs to the carbohydrate kinase PfkB family
AVM03_01650	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
AVM03_01650	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AVM03_01650	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AVM03_01655	COG0681	Belongs to the peptidase S26 family
AVM03_01665	COG0488	(ABC) transporter
AVM03_01670	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
AVM03_01675	COG2309	aminopeptidase activity
AVM03_01680	COG1077	Cell shape determining protein MreB Mrl
AVM03_01690	COG2002	toxin-antitoxin pair type II binding
AVM03_01695	COG3852	Histidine kinase
AVM03_01700	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
AVM03_01700	COG2105	PFAM AIG2 family protein
AVM03_01705	COG0569	domain protein
AVM03_01715	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
AVM03_01725	COG0561	phosphatase activity
AVM03_01730	COG0242	peptide deformylase activity
AVM03_01740	COG0497	DNA recombination
AVM03_01750	COG1028	Short-chain dehydrogenase reductase Sdr
AVM03_01750	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AVM03_01750	COG3321	synthase
AVM03_01750	COG4221	oxidoreductase activity
AVM03_01755	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AVM03_01755	COG3321	synthase
AVM03_01755	COG4221	oxidoreductase activity
AVM03_01755	COG0300	oxidoreductase activity
AVM03_01760	COG4221	oxidoreductase activity
AVM03_01760	COG3321	synthase
AVM03_01760	COG1028	Short-chain dehydrogenase reductase Sdr
AVM03_01760	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AVM03_01765	COG0300	oxidoreductase activity
AVM03_01765	COG4221	oxidoreductase activity
AVM03_01765	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AVM03_01765	COG3321	synthase
AVM03_01770	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AVM03_01770	COG0300	oxidoreductase activity
AVM03_01770	COG3321	synthase
AVM03_01770	COG4221	oxidoreductase activity
AVM03_01775	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AVM03_01775	COG0300	oxidoreductase activity
AVM03_01775	COG3321	synthase
AVM03_01775	COG4221	oxidoreductase activity
AVM03_01780	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AVM03_01780	COG1028	Short-chain dehydrogenase reductase Sdr
AVM03_01780	COG3321	synthase
AVM03_01780	COG4221	oxidoreductase activity
AVM03_01785	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
AVM03_01790	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
AVM03_01795	COG0022	dehydrogenase e1 component
AVM03_01800	COG0508	dehydrogenase complex catalyzes the overall conversion of
AVM03_01805	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AVM03_01810	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AVM03_01820	COG1982	Orn Lys Arg decarboxylase major
AVM03_01840	COG0483	inositol monophosphate 1-phosphatase activity
AVM03_01850	COG3227	Zinc metalloprotease (Elastase)
AVM03_01880	COG4896	Protein conserved in bacteria
AVM03_01890	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
AVM03_01895	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
AVM03_01900	COG2066	Belongs to the glutaminase family
AVM03_01910	COG0772	Belongs to the SEDS family
AVM03_01915	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
AVM03_01930	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
AVM03_01930	COG2010	Cytochrome c
AVM03_01935	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
AVM03_01940	COG1845	cytochrome c oxidase, subunit III
AVM03_01945	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
AVM03_01950	COG3336	cytochrome c oxidase
AVM03_01960	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
AVM03_01965	COG2340	Cysteine-rich secretory protein family
AVM03_01980	COG3679	Belongs to the UPF0342 family
AVM03_01995	COG0742	ribosomal rna small subunit methyltransferase
AVM03_02005	COG3314	Sporulation integral membrane protein YlbJ
AVM03_02010	COG1752	Esterase of the alpha-beta hydrolase superfamily
AVM03_02015	COG3480	Lon protease (S16) C-terminal proteolytic domain
AVM03_02025	COG1399	metal-binding, possibly nucleic acid-binding protein
AVM03_02040	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
AVM03_02060	COG4839	cell division protein FtsL
AVM03_02070	COG0768	penicillin binding
AVM03_02090	COG0772	Belongs to the SEDS family
AVM03_02105	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
AVM03_02110	COG0849	cell division
AVM03_02115	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
AVM03_02120	COG1404	Belongs to the peptidase S8 family
AVM03_02120	COG4412	M6 family metalloprotease domain protein
AVM03_02130	COG1191	sigma factor activity
AVM03_02135	COG1191	sigma factor activity
AVM03_02140	COG1119	ATPase activity
AVM03_02145	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AVM03_02150	COG1873	PFAM PRC-barrel domain
AVM03_02160	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
AVM03_02170	COG0762	integral membrane protein
AVM03_02175	COG2302	S4 RNA-binding domain
AVM03_02180	COG3599	regulation of cell shape
AVM03_02190	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
AVM03_02195	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
AVM03_02205	COG0564	pseudouridine synthase activity
AVM03_02215	COG2233	PERMEase
AVM03_02225	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
AVM03_02230	COG0505	Belongs to the CarA family
AVM03_02235	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
AVM03_02250	COG0284	orotidine-5'-phosphate decarboxylase activity
AVM03_02255	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
AVM03_02265	COG0306	phosphate transporter
AVM03_02280	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
AVM03_02285	COG2138	Cobalamin (vitamin B12) biosynthesis CbiX protein
AVM03_02290	COG1648	precorrin-2 dehydrogenase activity
AVM03_02300	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
AVM03_02305	COG1561	YicC-like family, N-terminal region
AVM03_02310	COG2052	Domain of unknown function (DUF370)
AVM03_02315	COG0194	GDP metabolic process
AVM03_02325	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
AVM03_02330	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
AVM03_02335	COG0242	peptide deformylase activity
AVM03_02345	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
AVM03_02345	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
AVM03_02355	COG0631	protein serine/threonine phosphatase activity
AVM03_02360	COG2815	serine threonine protein kinase
AVM03_02360	COG0515	serine threonine protein kinase
AVM03_02370	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
AVM03_02375	COG1564	THIamine pyrophosphokinase
AVM03_02390	COG1302	Protein conserved in bacteria
AVM03_02395	COG1461	Dihydroxyacetone kinase
AVM03_02400	COG1760	l-serine dehydratase
AVM03_02405	COG1760	l-serine dehydratase
AVM03_02410	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
AVM03_02425	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
AVM03_02430	COG1028	Short-chain dehydrogenase reductase Sdr
AVM03_02435	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AVM03_02445	COG1196	nuclear chromosome segregation
AVM03_02450	COG0552	protein localization to endoplasmic reticulum
AVM03_02465	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
AVM03_02475	COG1837	Belongs to the UPF0109 family
AVM03_02500	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
AVM03_02515	COG2257	FlhB HrpN YscU SpaS Family
AVM03_02525	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
AVM03_02530	COG0758	DNA mediated transformation
AVM03_02535	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
AVM03_02545	COG4974	Belongs to the 'phage' integrase family
AVM03_02565	COG1815	bacterial-type flagellum-dependent cell motility
AVM03_02570	COG1558	bacterial-type flagellum-dependent cell motility
AVM03_02575	COG1677	Flagellar hook-basal body complex protein FliE
AVM03_02580	COG1766	The M ring may be actively involved in energy transduction
AVM03_02585	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
AVM03_02590	COG1317	bacterial-type flagellum organization
AVM03_02595	COG1157	protein secretion by the type III secretion system
AVM03_02600	COG2882	bacterial-type flagellum organization
AVM03_02605	COG3334	PFAM MgtE intracellular
AVM03_02610	COG3144	bacterial-type flagellum assembly
AVM03_02615	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
AVM03_02620	COG4786	Flagellar basal body rod
AVM03_02625	COG1582	Flagellar protein (FlbD)
AVM03_02630	COG1580	Controls the rotational direction of flagella during chemotaxis
AVM03_02635	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
AVM03_02640	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
AVM03_02640	COG1776	CheC inhibitor of MCP methylation
AVM03_02645	COG2201	protein-glutamate methylesterase activity
AVM03_02650	COG3190	flagellar
AVM03_02655	COG1338	Plays a role in the flagellum-specific transport system
AVM03_02660	COG1987	bacterial-type flagellum assembly
AVM03_02665	COG1684	flagellar biosynthetic protein fliR
AVM03_02670	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
AVM03_02675	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
AVM03_02680	COG1419	protein localization to endoplasmic reticulum
AVM03_02685	COG0455	bacterial-type flagellum organization
AVM03_02690	COG2201	protein-glutamate methylesterase activity
AVM03_02695	COG2198	Histidine kinase
AVM03_02695	COG0643	Histidine kinase
AVM03_02700	COG0835	chemotaxis
AVM03_02705	COG1776	CheC inhibitor of MCP methylation
AVM03_02715	COG1191	sigma factor activity
AVM03_02745	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
AVM03_02750	COG4589	Belongs to the CDS family
AVM03_02760	COG0750	zinc metalloprotease
AVM03_02770	COG2176	DNA-directed DNA polymerase activity
AVM03_02780	COG0195	Participates in both transcription termination and antitermination
AVM03_02785	COG2740	Nucleic-acid-binding protein implicated in transcription termination
AVM03_02790	COG1358	cellular component organization or biogenesis
AVM03_02800	COG1550	Protein conserved in bacteria
AVM03_02815	COG0196	riboflavin kinase activity
AVM03_02830	COG0726	polysaccharide deacetylase
AVM03_02835	COG0612	Peptidase, M16
AVM03_02840	COG1873	PFAM PRC-barrel domain
AVM03_02845	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AVM03_02850	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
AVM03_02855	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
AVM03_02860	COG0527	aspartate kinase activity
AVM03_02870	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
AVM03_02875	COG0740	serine-type endopeptidase activity
AVM03_02885	COG4980	gas vesicle protein
AVM03_02885	COG1674	ftsk spoiiie
AVM03_02890	COG2188	Transcriptional regulator
AVM03_02895	COG2814	Major facilitator Superfamily
AVM03_02900	COG1846	Transcriptional regulator
AVM03_02905	COG1033	growth of symbiont in host cell
AVM03_02905	COG2409	Drug exporters of the RND superfamily
AVM03_02910	COG0612	Peptidase, M16
AVM03_02915	COG0612	Peptidase, M16
AVM03_02920	COG0300	oxidoreductase activity
AVM03_02935	COG1426	Protein conserved in bacteria
AVM03_02940	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
AVM03_02955	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
AVM03_02965	COG1692	metallophosphoesterase
AVM03_02970	COG2359	stage V sporulation protein S
AVM03_02990	COG4550	Control of competence regulator ComK, YlbF/YmcA
AVM03_03010	COG0582	viral genome integration into host DNA
AVM03_03050	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AVM03_03055	COG3425	synthase
AVM03_03060	COG1024	Enoyl-CoA hydratase
AVM03_03065	COG1024	Enoyl-CoA hydratase
AVM03_03070	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AVM03_03070	COG1028	Short-chain dehydrogenase reductase Sdr
AVM03_03070	COG3321	synthase
AVM03_03070	COG0318	PFAM AMP-dependent synthetase and ligase
AVM03_03070	COG0300	oxidoreductase activity
AVM03_03075	COG4221	oxidoreductase activity
AVM03_03075	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AVM03_03075	COG0300	oxidoreductase activity
AVM03_03075	COG3321	synthase
AVM03_03080	COG1028	Short-chain dehydrogenase reductase Sdr
AVM03_03080	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AVM03_03080	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AVM03_03080	COG3321	synthase
AVM03_03080	COG3321	synthase
AVM03_03080	COG1028	Short-chain dehydrogenase reductase Sdr
AVM03_03080	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AVM03_03080	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AVM03_03080	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AVM03_03080	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AVM03_03085	COG4221	oxidoreductase activity
AVM03_03085	COG1028	Short-chain dehydrogenase reductase Sdr
AVM03_03085	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AVM03_03085	COG3321	synthase
AVM03_03090	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
AVM03_03090	COG3321	synthase
AVM03_03090	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AVM03_03090	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
AVM03_03095	COG2124	cytochrome p450
AVM03_03100	COG3209	COG3209 Rhs family protein
AVM03_03105	COG3619	membrane
AVM03_03115	COG1404	Belongs to the peptidase S8 family
AVM03_03125	COG4195	phage-related replication protein
AVM03_03130	COG1764	response to oxidative stress
AVM03_03140	COG2076	Multidrug Resistance protein
AVM03_03180	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AVM03_03185	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AVM03_03190	COG4112	unkown
AVM03_03195	COG0860	N-Acetylmuramoyl-L-alanine amidase
AVM03_03205	COG0464	growth
AVM03_03210	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
AVM03_03215	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
AVM03_03220	COG0789	Transcriptional regulator
AVM03_03225	COG0174	glutamine synthetase
AVM03_03265	COG2211	Major facilitator Superfamily
AVM03_03270	COG3507	Belongs to the glycosyl hydrolase 43 family
AVM03_03285	COG1070	Carbohydrate kinase
AVM03_03290	COG3848	Pyruvate phosphate dikinase
AVM03_03290	COG0574	Belongs to the PEP-utilizing enzyme family
AVM03_03305	COG2378	regulation of single-species biofilm formation
AVM03_03310	COG2318	DinB family
AVM03_03315	COG1064	alcohol dehydrogenase
AVM03_03370	COG3397	chitin binding
AVM03_03375	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AVM03_03385	COG5434	Belongs to the glycosyl hydrolase 28 family
AVM03_03395	COG0756	dUTP diphosphatase activity
AVM03_03400	COG4195	phage-related replication protein
AVM03_03435	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
AVM03_03445	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
AVM03_03465	COG0785	Cytochrome C biogenesis protein
AVM03_03470	COG2201	protein-glutamate methylesterase activity
AVM03_03475	COG4846	Membrane protein involved in cytochrome C biogenesis
AVM03_03485	COG0071	Belongs to the small heat shock protein (HSP20) family
AVM03_03500	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
AVM03_03505	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AVM03_03520	COG0824	Thioesterase
AVM03_03530	COG4841	protein insertion into membrane
AVM03_03540	COG1832	CoA-binding protein
AVM03_03545	COG0187	DNA topoisomerase II activity
AVM03_03550	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
AVM03_03560	COG1115	amino acid carrier protein
AVM03_03570	COG1063	alcohol dehydrogenase
AVM03_03575	COG0800	Aldolase
AVM03_03580	COG1312	Catalyzes the dehydration of D-mannonate
AVM03_03585	COG1028	Short-chain dehydrogenase reductase Sdr
AVM03_03590	COG1609	Transcriptional regulator
AVM03_03595	COG2271	Major facilitator Superfamily
AVM03_03630	COG2205	protein histidine kinase activity
AVM03_03635	COG0745	RESPONSE REGULATOR receiver
AVM03_03645	COG3507	Belongs to the glycosyl hydrolase 43 family
AVM03_03670	COG1028	Short-chain dehydrogenase reductase Sdr
AVM03_03675	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
AVM03_03680	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
AVM03_03685	COG2610	gluconate transmembrane transporter activity
AVM03_03690	COG2124	cytochrome p450
AVM03_03695	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
AVM03_03710	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
AVM03_03720	COG2246	polysaccharide biosynthetic process
AVM03_03725	COG1210	Utp--glucose-1-phosphate uridylyltransferase
AVM03_03730	COG0586	Pfam SNARE associated Golgi protein
AVM03_03735	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
AVM03_03740	COG1024	Enoyl-CoA hydratase
AVM03_03745	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
AVM03_03750	COG0511	ligase activity, forming carbon-carbon bonds
AVM03_03755	COG0439	Biotin carboxylase
AVM03_03760	COG0318	PFAM AMP-dependent synthetase and ligase
AVM03_03765	COG1960	acyl-CoA dehydrogenase activity
AVM03_03770	COG1649	PFAM Uncharacterised BCR, COG1649
AVM03_03780	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AVM03_03780	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
AVM03_03785	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AVM03_03790	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AVM03_03795	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AVM03_03800	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AVM03_03805	COG2027	D-alanyl-D-alanine carboxypeptidase
AVM03_03810	COG2017	converts alpha-aldose to the beta-anomer
AVM03_03815	COG0534	Mate efflux family protein
AVM03_03830	COG0582	viral genome integration into host DNA
AVM03_03835	COG0166	Belongs to the GPI family
AVM03_03840	COG0405	Gamma-glutamyltransferase
AVM03_03845	COG2814	Major facilitator Superfamily
AVM03_03850	COG0640	Transcriptional regulator
AVM03_03865	COG0604	alcohol dehydrogenase
AVM03_03870	COG0493	'glutamate synthase
AVM03_03875	COG0070	glutamate synthase
AVM03_03875	COG0069	glutamate synthase activity
AVM03_03875	COG0067	glutamate synthase
AVM03_03880	COG0583	DNA-binding transcription factor activity
AVM03_03885	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
AVM03_03900	COG0300	oxidoreductase activity
AVM03_03905	COG4768	protein containing a divergent version of the methyl-accepting chemotaxis-like domain
AVM03_03915	COG2814	Major facilitator Superfamily
AVM03_03920	COG1070	Carbohydrate kinase
AVM03_03925	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
AVM03_03930	COG0243	molybdopterin cofactor binding
AVM03_03960	COG5444	nuclease activity
AVM03_04010	COG3220	belongs to the UPF0276 family
AVM03_04035	COG1028	Short-chain dehydrogenase reductase Sdr
AVM03_04040	COG1733	regulation of RNA biosynthetic process
AVM03_04045	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AVM03_04050	COG2207	Transcriptional regulator
AVM03_04050	COG0662	Cupin 2, conserved barrel domain protein
AVM03_04055	COG1309	transcriptional regulator
AVM03_04060	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AVM03_04070	COG0640	Transcriptional regulator
AVM03_04075	COG0741	lytic transglycosylase activity
AVM03_04080	COG2322	membrane
AVM03_04095	COG1619	proteins homologs of microcin C7 resistance protein MccF
AVM03_04105	COG1388	LysM domain
AVM03_04105	COG3584	3D domain protein
AVM03_04110	COG0514	ATP-dependent DNA helicase (RecQ)
AVM03_04115	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
AVM03_04120	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
AVM03_04135	COG0071	Belongs to the small heat shock protein (HSP20) family
AVM03_04160	COG1012	belongs to the aldehyde dehydrogenase family
AVM03_04165	COG1657	PFAM Prenyltransferase squalene oxidase
AVM03_04170	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
AVM03_04175	COG0733	neurotransmitter:sodium symporter activity
AVM03_04180	COG0385	Bile acid
AVM03_04185	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AVM03_04190	COG0508	dehydrogenase complex catalyzes the overall conversion of
AVM03_04200	COG4548	von Willebrand factor, type A
AVM03_04205	COG0714	Associated with various cellular activities
AVM03_04210	COG2032	superoxide dismutase activity
AVM03_04215	COG0791	NLP P60 protein
AVM03_04215	COG1388	LysM domain
AVM03_04220	COG1819	glycosyl
AVM03_04225	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
AVM03_04230	COG0534	Mate efflux family protein
AVM03_04235	COG1366	Belongs to the anti-sigma-factor antagonist family
AVM03_04240	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
AVM03_04245	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
AVM03_04255	COG2962	Rard protein
AVM03_04270	COG1942	4-Oxalocrotonate Tautomerase
AVM03_04280	COG1733	regulation of RNA biosynthetic process
AVM03_04285	COG0778	Nitroreductase
AVM03_04290	COG0400	carboxylic ester hydrolase activity
AVM03_04295	COG0346	lactoylglutathione lyase activity
AVM03_04305	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AVM03_04315	COG2723	6-phospho-beta-galactosidase activity
AVM03_04320	COG2188	Transcriptional regulator
AVM03_04325	COG0793	Belongs to the peptidase S41A family
AVM03_04325	COG3409	Peptidoglycan-binding domain 1 protein
AVM03_04330	COG2226	methyltransferase
AVM03_04340	COG1876	peptidase activity
AVM03_04355	COG0671	phosphoesterase, PA-phosphatase related
AVM03_04385	COG1509	lysine 2,3-aminomutase activity
AVM03_04390	COG0456	acetyltransferase
AVM03_04395	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AVM03_04400	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
AVM03_04405	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
AVM03_04410	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
AVM03_04415	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
AVM03_04425	COG0456	acetyltransferase
AVM03_04430	COG0463	Glycosyl transferase, family 2
AVM03_04445	COG4641	Protein conserved in bacteria
AVM03_04455	COG1086	Polysaccharide biosynthesis protein
AVM03_04495	COG1388	LysM domain
AVM03_04500	COG0457	Tetratricopeptide repeat
AVM03_04510	COG3391	amine dehydrogenase activity
AVM03_04545	COG5444	nuclease activity
AVM03_04560	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
AVM03_04580	COG1846	Transcriptional regulator
AVM03_04585	COG4698	Protein conserved in bacteria
AVM03_04590	COG2755	lipolytic protein G-D-S-L family
AVM03_04595	COG1999	signal sequence binding
AVM03_04605	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
AVM03_04610	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
AVM03_04615	COG1272	protein, Hemolysin III
AVM03_04620	COG0204	Acyl-transferase
AVM03_04625	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
AVM03_04640	COG2521	methyltransferase
AVM03_04640	COG2136	Putative SAM-dependent methyltransferase
AVM03_04655	COG1413	lyase activity
AVM03_04660	COG1418	mRNA catabolic process
AVM03_04665	COG0386	Belongs to the glutathione peroxidase family
AVM03_04675	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
AVM03_04680	COG1278	Cold shock
AVM03_04700	COG0328	RNA-DNA hybrid ribonuclease activity
AVM03_04705	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
AVM03_04710	COG0328	RNA-DNA hybrid ribonuclease activity
AVM03_04720	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AVM03_04730	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
AVM03_04735	COG1755	Isoprenylcysteine carboxyl methyltransferase
AVM03_04740	COG3424	synthase
AVM03_04765	COG1335	isochorismatase
AVM03_04775	COG2233	PERMEase
AVM03_04785	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
AVM03_04790	COG1199	ATP-dependent helicase activity
AVM03_04800	COG0116	Belongs to the methyltransferase superfamily
AVM03_04815	COG3359	exonuclease
AVM03_04820	COG1205	dead DEAH box helicase
AVM03_04820	COG1111	helicase
AVM03_04825	COG2190	(PTS) system
AVM03_04830	COG0071	Belongs to the small heat shock protein (HSP20) family
AVM03_04870	COG4499	WXG100 protein secretion system (Wss), protein YukC
AVM03_04870	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AVM03_04880	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
AVM03_04885	COG3935	DnaD domain protein
AVM03_04895	COG0436	Aminotransferase
AVM03_04900	COG5353	protein conserved in bacteria
AVM03_04905	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AVM03_04905	COG1199	ATP-dependent helicase activity
AVM03_04935	COG0438	transferase activity, transferring glycosyl groups
AVM03_04940	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
AVM03_04955	COG1694	Mazg nucleotide pyrophosphohydrolase
AVM03_04960	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
AVM03_04965	COG2140	Oxalate decarboxylase
AVM03_04975	COG4347	Protein of unknown function (DUF1405)
AVM03_04980	COG2010	Cytochrome c
AVM03_04980	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
AVM03_04985	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
AVM03_04990	COG0723	plastoquinol--plastocyanin reductase activity
AVM03_05005	COG0457	Tetratricopeptide repeat
AVM03_05015	COG0287	Prephenate dehydrogenase
AVM03_05050	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
AVM03_05055	COG4401	Chorismate mutase type I
AVM03_05070	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
AVM03_05075	COG0105	UTP biosynthetic process
AVM03_05080	COG0142	geranyltranstransferase activity
AVM03_05090	COG0142	geranyltranstransferase activity
AVM03_05105	COG0776	regulation of translation
AVM03_05110	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
AVM03_05145	COG0539	negative regulation of cytoplasmic translation
AVM03_05155	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
AVM03_05160	COG2959	enzyme of heme biosynthesis
AVM03_05165	COG3409	Peptidoglycan-binding domain 1 protein
AVM03_05165	COG3773	Cell wall hydrolase
AVM03_05170	COG2339	peptidase activity
AVM03_05175	COG0492	ferredoxin-NADP+ reductase activity
AVM03_05180	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
AVM03_05185	COG4862	establishment of competence for transformation
AVM03_05190	COG1408	metallophosphoesterase
AVM03_05200	COG1388	LysM domain
AVM03_05205	COG1266	CAAX protease self-immunity
AVM03_05210	COG0514	ATP-dependent DNA helicase (RecQ)
AVM03_05215	COG4955	Helix-turn-helix domain
AVM03_05220	COG1141	Ferredoxin
AVM03_05225	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
AVM03_05230	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
AVM03_05240	COG1595	DNA-templated transcription, initiation
AVM03_05245	COG5002	protein histidine kinase activity
AVM03_05250	COG0745	RESPONSE REGULATOR receiver
AVM03_05255	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
AVM03_05260	COG1333	cytochrome c biogenesis protein
AVM03_05265	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AVM03_05270	COG1187	pseudouridine synthase activity
AVM03_05275	COG0700	Nucleoside recognition
AVM03_05280	COG2715	membrane protein required for spore maturation
AVM03_05285	COG1686	Belongs to the peptidase S11 family
AVM03_05305	COG1547	Domain of unknown function (DUF309)
AVM03_05310	COG0456	acetyltransferase
AVM03_05325	COG0307	riboflavin synthase, alpha
AVM03_05330	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AVM03_05330	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AVM03_05340	COG0681	Belongs to the peptidase S26 family
AVM03_05350	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
AVM03_05355	COG4086	secreted protein
AVM03_05360	COG0019	diaminopimelate decarboxylase activity
AVM03_05365	COG0697	spore germination
AVM03_05380	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
AVM03_05400	COG1191	sigma factor activity
AVM03_05410	COG1366	Belongs to the anti-sigma-factor antagonist family
AVM03_05415	COG1686	Belongs to the peptidase S11 family
AVM03_05420	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
AVM03_05425	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
AVM03_05430	COG4974	Belongs to the 'phage' integrase family
AVM03_05440	COG0735	belongs to the Fur family
AVM03_05445	COG1300	Membrane
AVM03_05460	COG0281	malic enzyme
AVM03_05465	COG1757	Na H antiporter
AVM03_05470	COG1027	Aspartate ammonia-lyase
AVM03_05475	COG0252	asparaginase activity
AVM03_05480	COG1396	sequence-specific DNA binding
AVM03_05485	COG1379	DNA repair
AVM03_05490	COG0494	nUDIX hydrolase
AVM03_05500	COG0667	Aldo Keto reductase
AVM03_05510	COG1073	alpha beta
AVM03_05520	COG4918	Iron-sulphur cluster biosynthesis
AVM03_05525	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
AVM03_05525	COG0456	acetyltransferase
AVM03_05530	COG2329	Antibiotic biosynthesis monooxygenase
AVM03_05535	COG0456	acetyltransferase
AVM03_05540	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
AVM03_05555	COG0628	permease
AVM03_05560	COG0346	lactoylglutathione lyase activity
AVM03_05570	COG3048	D-serine ammonia-lyase activity
AVM03_05575	COG0300	oxidoreductase activity
AVM03_05580	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AVM03_05585	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
AVM03_05590	COG1024	Enoyl-CoA hydratase
AVM03_05595	COG3425	synthase
AVM03_05600	COG2124	cytochrome p450
AVM03_05605	COG3321	synthase
AVM03_05605	COG1028	Short-chain dehydrogenase reductase Sdr
AVM03_05605	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AVM03_05605	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AVM03_05605	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AVM03_05610	COG3321	synthase
AVM03_05610	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AVM03_05610	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AVM03_05610	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AVM03_05610	COG1028	Short-chain dehydrogenase reductase Sdr
AVM03_05615	COG3321	synthase
AVM03_05615	COG0300	oxidoreductase activity
AVM03_05615	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AVM03_05615	COG0318	PFAM AMP-dependent synthetase and ligase
AVM03_05615	COG1028	Short-chain dehydrogenase reductase Sdr
AVM03_05620	COG0300	oxidoreductase activity
AVM03_05620	COG0318	PFAM AMP-dependent synthetase and ligase
AVM03_05620	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AVM03_05620	COG1028	Short-chain dehydrogenase reductase Sdr
AVM03_05620	COG3321	synthase
AVM03_05625	COG1028	Short-chain dehydrogenase reductase Sdr
AVM03_05625	COG3321	synthase
AVM03_05625	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AVM03_05625	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AVM03_05625	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AVM03_05630	COG0300	oxidoreductase activity
AVM03_05630	COG3321	synthase
AVM03_05630	COG1028	Short-chain dehydrogenase reductase Sdr
AVM03_05630	COG0318	PFAM AMP-dependent synthetase and ligase
AVM03_05630	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AVM03_05635	COG3321	synthase
AVM03_05635	COG1028	Short-chain dehydrogenase reductase Sdr
AVM03_05635	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AVM03_05635	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AVM03_05635	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AVM03_05640	COG1028	Short-chain dehydrogenase reductase Sdr
AVM03_05645	COG0318	PFAM AMP-dependent synthetase and ligase
AVM03_05660	COG2070	2-Nitropropane dioxygenase
AVM03_05660	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
AVM03_05665	COG0250	Participates in transcription elongation, termination and antitermination
AVM03_05685	COG0596	Alpha beta hydrolase
AVM03_05700	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
AVM03_05705	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
AVM03_05720	COG0706	membrane insertase activity
AVM03_05725	COG2195	Cleaves the N-terminal amino acid of tripeptides
AVM03_05730	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
AVM03_05735	COG0346	lactoylglutathione lyase activity
AVM03_05740	COG1376	ErfK ybiS ycfS ynhG family protein
AVM03_05745	COG4129	membrane
AVM03_05750	COG1126	abc transporter atp-binding protein
AVM03_05755	COG0765	amino acid transport
AVM03_05760	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AVM03_05770	COG1597	lipid kinase activity
AVM03_05775	COG0508	dehydrogenase complex catalyzes the overall conversion of
AVM03_05780	COG0022	dehydrogenase e1 component
AVM03_05785	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
AVM03_05790	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AVM03_05795	COG3426	butyrate kinase activity
AVM03_05800	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
AVM03_05805	COG0280	phosphate acetyltransferase
AVM03_05810	COG3829	transcription factor binding
AVM03_05810	COG3290	protein histidine kinase activity
AVM03_05820	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
AVM03_05825	COG2079	MmgE PrpD family protein
AVM03_05830	COG0372	Belongs to the citrate synthase family
AVM03_05835	COG1960	acyl-CoA dehydrogenase activity
AVM03_05840	COG1250	3-hydroxyacyl-CoA dehydrogenase
AVM03_05845	COG0183	Belongs to the thiolase family
AVM03_05850	COG0584	glycerophosphoryl diester phosphodiesterase
AVM03_05855	COG0860	N-Acetylmuramoyl-L-alanine amidase
AVM03_05880	COG1902	pentaerythritol trinitrate reductase activity
AVM03_05895	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
AVM03_05900	COG0745	RESPONSE REGULATOR receiver
AVM03_05905	COG0750	zinc metalloprotease
AVM03_05910	COG0497	DNA recombination
AVM03_05920	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
AVM03_05930	COG0142	geranyltranstransferase activity
AVM03_05940	COG1570	exodeoxyribonuclease VII activity
AVM03_05955	COG1302	Protein conserved in bacteria
AVM03_05960	COG0439	Biotin carboxylase
AVM03_05965	COG0511	ligase activity, forming carbon-carbon bonds
AVM03_06005	COG3854	ATPases associated with a variety of cellular activities
AVM03_06020	COG0006	proline dipeptidase activity
AVM03_06030	COG3872	metal-dependent enzyme
AVM03_06040	COG1752	Esterase of the alpha-beta hydrolase superfamily
AVM03_06055	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
AVM03_06075	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
AVM03_06090	COG1396	sequence-specific DNA binding
AVM03_06100	COG0681	Belongs to the peptidase S26 family
AVM03_06125	COG4940	Competence protein ComGF
AVM03_06135	COG4970	Tfp pilus assembly protein FimT
AVM03_06140	COG4537	Required for transformation and DNA binding
AVM03_06145	COG1459	type II secretion system
AVM03_06150	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
AVM03_06155	COG0598	Magnesium transport protein CorA
AVM03_06160	COG1253	flavin adenine dinucleotide binding
AVM03_06165	COG1366	Belongs to the anti-sigma-factor antagonist family
AVM03_06175	COG1393	Belongs to the ArsC family
AVM03_06185	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AVM03_06190	COG0011	TIGRFAM Protein of
AVM03_06200	COG2866	Carboxypeptidase
AVM03_06205	COG1940	carbohydrate kinase activity
AVM03_06210	COG4483	Protein conserved in bacteria
AVM03_06215	COG1757	Na H antiporter
AVM03_06220	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
AVM03_06230	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
AVM03_06235	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
AVM03_06240	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
AVM03_06245	COG0581	inorganic phosphate transmembrane transporter activity
AVM03_06250	COG0573	inorganic phosphate transmembrane transporter activity
AVM03_06255	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
AVM03_06265	COG0477	Major facilitator Superfamily
AVM03_06270	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
AVM03_06275	COG2839	Protein conserved in bacteria
AVM03_06280	COG5521	maltodextrose utilization protein MalA
AVM03_06285	COG1388	LysM domain
AVM03_06295	COG4709	membrane
AVM03_06300	COG5663	Belongs to the 5'(3')-deoxyribonucleotidase family
AVM03_06305	COG0735	belongs to the Fur family
AVM03_06310	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
AVM03_06325	COG0513	Belongs to the DEAD box helicase family
AVM03_06340	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
AVM03_06345	COG2384	SAM-dependent methyltransferase
AVM03_06350	COG2010	Cytochrome c
AVM03_06355	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
AVM03_06360	COG0358	DNA primase activity
AVM03_06375	COG0517	IMP dehydrogenase activity
AVM03_06380	COG0751	glycine-tRNA ligase activity
AVM03_06395	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
AVM03_06400	COG0295	cytidine deaminase activity
AVM03_06405	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
AVM03_06415	COG1480	7TM receptor with intracellular HD hydrolase
AVM03_06420	COG1702	phosphate starvation-inducible protein PhoH
AVM03_06425	COG0561	phosphatase activity
AVM03_06440	COG4864	UPF0365 protein
AVM03_06445	COG1030	water channel activity
AVM03_06450	COG1610	YqeY-like protein
AVM03_06455	COG0828	Belongs to the bacterial ribosomal protein bS21 family
AVM03_06460	COG1283	sodium-dependent phosphate transmembrane transporter activity
AVM03_06465	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
AVM03_06470	COG1385	rRNA (uridine-N3-)-methyltransferase activity
AVM03_06500	COG0635	Involved in the biosynthesis of porphyrin-containing compound
AVM03_06515	COG0860	N-Acetylmuramoyl-L-alanine amidase
AVM03_06530	COG1466	dna polymerase III delta subunit
AVM03_06535	COG2333	competence protein COMEC
AVM03_06535	COG0658	competence protein
AVM03_06540	COG2131	deaminase
AVM03_06545	COG1555	photosystem II stabilization
AVM03_06545	COG1596	polysaccharide export
AVM03_06550	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
AVM03_06555	COG2226	methyltransferase
AVM03_06560	COG0799	negative regulation of ribosome biogenesis
AVM03_06565	COG1713	HD superfamily hydrolase involved in NAD metabolism
AVM03_06575	COG1534	Rna-binding protein
AVM03_06580	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
AVM03_06585	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
AVM03_06590	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
AVM03_06600	COG2755	lipolytic protein G-D-S-L family
AVM03_06605	COG0726	polysaccharide deacetylase
AVM03_06610	COG0398	Pfam SNARE associated Golgi protein
AVM03_06635	COG2207	Transcriptional regulator
AVM03_06635	COG3708	Transcriptional regulator
AVM03_06640	COG0563	adenylate kinase activity
AVM03_06650	COG2814	Major facilitator Superfamily
AVM03_06660	COG2318	DinB family
AVM03_06670	COG0561	phosphatase activity
AVM03_06675	COG0561	phosphatase activity
AVM03_06685	COG1482	cell wall glycoprotein biosynthetic process
AVM03_06690	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AVM03_06690	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AVM03_06690	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
AVM03_06695	COG3711	transcriptional antiterminator
AVM03_06695	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
AVM03_06705	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
AVM03_06710	COG0583	DNA-binding transcription factor activity
AVM03_06715	COG2814	Major facilitator Superfamily
AVM03_06720	COG2124	cytochrome p450
AVM03_06720	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
AVM03_06725	COG1309	transcriptional regulator
AVM03_06730	COG2226	methyltransferase
AVM03_06740	COG2116	formate transmembrane transporter activity
AVM03_06745	COG5609	conserved protein (DUF2294)
AVM03_06750	COG3383	formate dehydrogenase (NAD+) activity
AVM03_06755	COG2427	Protein of unknown function (DUF1641)
AVM03_06765	COG0626	cystathionine gamma-synthase activity
AVM03_06770	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
AVM03_06795	COG0768	penicillin binding
AVM03_06825	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
AVM03_06840	COG4472	Bacterial protein of unknown function (DUF965)
AVM03_06850	COG0628	permease
AVM03_06855	COG1126	abc transporter atp-binding protein
AVM03_06860	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AVM03_06865	COG0765	amino acid transport
AVM03_06870	COG0765	amino acid transport
AVM03_06880	COG3881	PFAM PRC-barrel domain
AVM03_06885	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
AVM03_06890	COG0457	Tetratricopeptide repeat
AVM03_06900	COG1104	cysteine desulfurase activity
AVM03_06905	COG1959	2 iron, 2 sulfur cluster binding
AVM03_06910	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
AVM03_06915	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
AVM03_06930	COG0860	N-Acetylmuramoyl-L-alanine amidase
AVM03_06930	COG3103	Sh3 type 3 domain protein
AVM03_06930	COG4991	sh3 domain protein
AVM03_06940	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AVM03_06950	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
AVM03_06950	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
AVM03_06955	COG5416	Lipopolysaccharide assembly protein A domain
AVM03_06960	COG0490	domain, Protein
AVM03_06965	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
AVM03_06965	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
AVM03_06975	COG2244	polysaccharide biosynthetic process
AVM03_06980	COG2323	membrane
AVM03_06990	COG1862	Preprotein translocase
AVM03_07035	COG1388	LysM domain
AVM03_07045	COG0157	Belongs to the NadC ModD family
AVM03_07050	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
AVM03_07055	COG1104	cysteine desulfurase activity
AVM03_07060	COG1827	regulation of RNA biosynthetic process
AVM03_07065	COG0077	Prephenate dehydratase
AVM03_07080	COG3290	protein histidine kinase activity
AVM03_07085	COG0211	Belongs to the bacterial ribosomal protein bL27 family
AVM03_07090	COG2868	ribosomal protein
AVM03_07100	COG1994	Peptidase M50
AVM03_07105	COG0739	heme binding
AVM03_07110	COG2894	cell division
AVM03_07120	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
AVM03_07125	COG1792	Involved in formation and maintenance of cell shape
AVM03_07130	COG1077	Cell shape determining protein MreB Mrl
AVM03_07140	COG0457	Tetratricopeptide repeat
AVM03_07245	COG0740	serine-type endopeptidase activity
AVM03_07355	COG1396	sequence-specific DNA binding
AVM03_07385	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
AVM03_07390	COG0285	dihydrofolate synthase activity
AVM03_07395	COG0525	valine-tRNA ligase activity
AVM03_07405	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
AVM03_07410	COG1388	LysM domain
AVM03_07420	COG0113	porphobilinogen synthase activity
AVM03_07425	COG1587	Uroporphyrinogen-III synthase
AVM03_07435	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
AVM03_07455	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
AVM03_07460	COG1067	ATP-dependent peptidase activity
AVM03_07460	COG0470	DNA polymerase III
AVM03_07475	COG0457	Tetratricopeptide repeat
AVM03_07475	COG1477	protein flavinylation
AVM03_07490	COG0473	3-isopropylmalate dehydrogenase activity
AVM03_07505	COG0440	acetolactate synthase activity
AVM03_07510	COG0028	Belongs to the TPP enzyme family
AVM03_07535	COG0622	Phosphoesterase
AVM03_07540	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
AVM03_07550	COG5401	PFAM Sporulation and spore germination
AVM03_07560	COG1846	Transcriptional regulator
AVM03_07565	COG2197	response regulator
AVM03_07570	COG0824	Thioesterase
AVM03_07575	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
AVM03_07580	COG1053	succinate dehydrogenase
AVM03_07585	COG2009	succinate dehydrogenase
AVM03_07590	COG1719	4-vinyl reductase, 4VR
AVM03_07595	COG0527	aspartate kinase activity
AVM03_07605	COG3118	belongs to the thioredoxin family
AVM03_07610	COG3534	alpha-L-arabinofuranosidase
AVM03_07615	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
AVM03_07620	COG2086	electron transfer activity
AVM03_07625	COG1024	Enoyl-CoA hydratase
AVM03_07630	COG1309	transcriptional regulator
AVM03_07635	COG0318	PFAM AMP-dependent synthetase and ligase
AVM03_07645	COG3766	membrane
AVM03_07655	COG1796	DNA polymerase
AVM03_07655	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
AVM03_07660	COG1286	toxin biosynthetic process
AVM03_07675	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AVM03_07675	COG0072	phenylalanine-tRNA ligase activity
AVM03_07680	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
AVM03_07685	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AVM03_07695	COG3835	regulator
AVM03_07700	COG0277	FAD linked oxidase domain protein
AVM03_07705	COG0247	lactate metabolic process
AVM03_07710	COG1966	Carbon starvation protein
AVM03_07715	COG3534	alpha-L-arabinofuranosidase
AVM03_07720	COG0395	ABC-type sugar transport system, permease component
AVM03_07725	COG1175	transmembrane transport
AVM03_07730	COG1653	transport
AVM03_07740	COG0647	UMP catabolic process
AVM03_07745	COG0235	Class ii aldolase
AVM03_07750	COG1069	ribulokinase activity
AVM03_07755	COG2160	L-arabinose isomerase activity
AVM03_07760	COG3507	Belongs to the glycosyl hydrolase 43 family
AVM03_07765	COG1363	Peptidase, m42
AVM03_07775	COG3326	Membrane
AVM03_07780	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
AVM03_07790	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
AVM03_07795	COG1346	cytolysis
AVM03_07800	COG1380	Effector of murein hydrolase LrgA
AVM03_07805	COG3279	Response regulator of the LytR AlgR family
AVM03_07810	COG3275	phosphorelay sensor kinase activity
AVM03_07830	COG0398	Pfam SNARE associated Golgi protein
AVM03_07835	COG1484	DNA-dependent DNA replication
AVM03_07840	COG3611	Membrane attachment protein
AVM03_07855	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
AVM03_07860	COG1733	regulation of RNA biosynthetic process
AVM03_07865	COG2814	Major facilitator Superfamily
AVM03_07870	COG0656	L-ascorbic acid biosynthetic process
AVM03_07875	COG0237	dephospho-CoA kinase activity
AVM03_07880	COG1971	Probably functions as a manganese efflux pump
AVM03_07885	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
AVM03_07890	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AVM03_07890	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AVM03_07895	COG5002	protein histidine kinase activity
AVM03_07900	COG0745	RESPONSE REGULATOR receiver
AVM03_07910	COG0538	isocitrate dehydrogenase activity
AVM03_07915	COG0372	Belongs to the citrate synthase family
AVM03_07930	COG0628	permease
AVM03_07935	COG3030	protein affecting phage T7 exclusion by the F plasmid
AVM03_07940	COG0469	pyruvate kinase activity
AVM03_07965	COG0281	malic enzyme
AVM03_07970	COG0587	DNA-directed DNA polymerase activity
AVM03_07990	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
AVM03_08000	COG4109	DRTGG domain
AVM03_08010	COG1028	Short-chain dehydrogenase reductase Sdr
AVM03_08025	COG0521	Mo-molybdopterin cofactor biosynthetic process
AVM03_08035	COG0827	DNA restriction-modification system
AVM03_08040	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
AVM03_08045	COG3874	Sporulation protein YtfJ
AVM03_08055	COG1714	RDD family
AVM03_08060	COG0616	signal peptide processing
AVM03_08065	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
AVM03_08070	COG1574	metal-dependent hydrolase with the TIM-barrel fold
AVM03_08075	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AVM03_08090	COG1104	cysteine desulfurase activity
AVM03_08095	COG1114	Component of the transport system for branched-chain amino acids
AVM03_08105	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
AVM03_08110	COG1309	transcriptional regulator
AVM03_08115	COG1956	GAF domain-containing protein
AVM03_08120	COG2199	diguanylate cyclase activity
AVM03_08120	COG2203	Gaf domain
AVM03_08130	COG1012	belongs to the aldehyde dehydrogenase family
AVM03_08135	COG4282	regulation of fungal-type cell wall biogenesis
AVM03_08160	COG0305	Participates in initiation and elongation during chromosome replication
AVM03_08165	COG1017	nitric oxide dioxygenase activity
AVM03_08165	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AVM03_08190	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
AVM03_08195	COG1378	Sugar-specific transcriptional regulator TrmB
AVM03_08215	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AVM03_08220	COG0454	-acetyltransferase
AVM03_08225	COG0517	IMP dehydrogenase activity
AVM03_08230	COG0123	including yeast histone deacetylase and acetoin utilization protein
AVM03_08235	COG1360	Flagellar Motor Protein
AVM03_08240	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
AVM03_08245	COG1609	Transcriptional regulator
AVM03_08250	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
AVM03_08250	COG1605	Chorismate mutase
AVM03_08255	COG3118	belongs to the thioredoxin family
AVM03_08260	COG4980	gas vesicle protein
AVM03_08265	COG4768	protein containing a divergent version of the methyl-accepting chemotaxis-like domain
AVM03_08275	COG1674	ftsk spoiiie
AVM03_08280	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AVM03_08290	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AVM03_08300	COG1363	Peptidase, m42
AVM03_08305	COG5584	Small secreted protein
AVM03_08310	COG0281	malic enzyme
AVM03_08315	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AVM03_08330	COG0510	thiamine kinase activity
AVM03_08335	COG1597	lipid kinase activity
AVM03_08345	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
AVM03_08350	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
AVM03_08355	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AVM03_08360	COG2252	PERMEase
AVM03_08365	COG4473	ABC transporter
AVM03_08370	COG1131	(ABC) transporter
AVM03_08375	COG1187	pseudouridine synthase activity
AVM03_08380	COG2244	polysaccharide biosynthetic process
AVM03_08385	COG2081	HI0933 family
AVM03_08390	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
AVM03_08420	COG1486	melibiose metabolic process
AVM03_08430	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
AVM03_08445	COG2202	Pas domain
AVM03_08445	COG1366	Belongs to the anti-sigma-factor antagonist family
AVM03_08450	COG2814	Major facilitator Superfamily
AVM03_08455	COG5522	Integral membrane protein (intg_mem_TP0381)
AVM03_08460	COG0577	efflux transmembrane transporter activity
AVM03_08465	COG1136	(ABC) transporter
AVM03_08470	COG2205	protein histidine kinase activity
AVM03_08475	COG0745	RESPONSE REGULATOR receiver
AVM03_08480	COG0577	efflux transmembrane transporter activity
AVM03_08485	COG1136	(ABC) transporter
AVM03_08505	COG1131	(ABC) transporter
AVM03_08510	COG1725	Transcriptional regulator
AVM03_08520	COG1242	4 iron, 4 sulfur cluster binding
AVM03_08525	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
AVM03_08535	COG0584	glycerophosphoryl diester phosphodiesterase
AVM03_08545	COG2267	carboxylic ester hydrolase activity
AVM03_08550	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
AVM03_08555	COG1113	amino acid transport
AVM03_08560	COG0367	asparagine synthase
AVM03_08580	COG1506	peptidase
AVM03_08585	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AVM03_08590	COG1116	anion transmembrane transporter activity
AVM03_08595	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AVM03_08600	COG0494	nUDIX hydrolase
AVM03_08605	COG4824	toxin secretion phage lysis holin
AVM03_08610	COG0783	Belongs to the Dps family
AVM03_08635	COG0288	reversible hydration of carbon dioxide
AVM03_08645	COG1271	oxidase subunit
AVM03_08650	COG1294	oxidase, subunit
AVM03_08655	COG4948	Mandelate Racemase Muconate Lactonizing
AVM03_08665	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
AVM03_08670	COG0596	Alpha beta hydrolase
AVM03_08680	COG1169	isochorismate synthase
AVM03_08685	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
AVM03_08690	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
AVM03_08815	COG3859	Proton-coupled thiamine transporter YuaJ
AVM03_08820	COG2268	Band 7 protein
AVM03_08825	COG1585	Membrane protein implicated in regulation of membrane protease activity
AVM03_08830	COG2318	DinB family
AVM03_08840	COG1454	alcohol dehydrogenase
AVM03_08850	COG1510	regulation of RNA biosynthetic process
AVM03_08860	COG0569	domain protein
AVM03_08865	COG1705	Flagellar rod assembly protein muramidase FlgJ
AVM03_08870	COG1017	nitric oxide dioxygenase activity
AVM03_08870	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AVM03_08890	COG0457	Tetratricopeptide repeat
AVM03_08910	COG5444	nuclease activity
AVM03_08915	COG4282	regulation of fungal-type cell wall biogenesis
AVM03_08935	COG0628	permease
AVM03_08940	COG0673	inositol 2-dehydrogenase activity
AVM03_08945	COG0693	protein deglycase activity
AVM03_08950	COG0840	transmembrane signaling receptor activity
AVM03_08955	COG0840	transmembrane signaling receptor activity
AVM03_08960	COG0840	transmembrane signaling receptor activity
AVM03_08965	COG0840	transmembrane signaling receptor activity
AVM03_08980	COG2070	2-Nitropropane dioxygenase
AVM03_08985	COG0432	Pfam Uncharacterised protein family UPF0047
AVM03_08990	COG0366	Alpha amylase catalytic
AVM03_08995	COG1253	flavin adenine dinucleotide binding
AVM03_09000	COG2738	Putative neutral zinc metallopeptidase
AVM03_09015	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
AVM03_09045	COG1335	isochorismatase
AVM03_09050	COG1979	alcohol dehydrogenase
AVM03_09055	COG1979	alcohol dehydrogenase
AVM03_09060	COG2155	Conserved Protein
AVM03_09065	COG1098	S1 RNA binding domain
AVM03_09070	COG0436	Aminotransferase
AVM03_09075	COG1522	sequence-specific DNA binding
AVM03_09080	COG2267	carboxylic ester hydrolase activity
AVM03_09090	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
AVM03_09095	COG2205	protein histidine kinase activity
AVM03_09105	COG5018	Exonuclease
AVM03_09110	COG2814	Major facilitator Superfamily
AVM03_09115	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AVM03_09120	COG3011	Protein conserved in bacteria
AVM03_09130	COG3290	protein histidine kinase activity
AVM03_09135	COG4565	transcriptional regulatory protein
AVM03_09165	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
AVM03_09165	COG2111	Na H antiporter
AVM03_09170	COG2111	Na H antiporter
AVM03_09175	COG1006	Multisubunit Na H antiporter MnhC subunit
AVM03_09180	COG0651	ATP synthesis coupled electron transport
AVM03_09185	COG1863	multisubunit Na H antiporter MnhE subunit
AVM03_09190	COG2212	antiporter activity
AVM03_09195	COG1320	monovalent cation:proton antiporter activity
AVM03_09200	COG2050	protein possibly involved in aromatic compounds catabolism
AVM03_09205	COG2197	response regulator
AVM03_09210	COG4585	Histidine kinase
AVM03_09220	COG0142	geranyltranstransferase activity
AVM03_09240	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
AVM03_09245	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
AVM03_09250	COG1335	isochorismatase
AVM03_09255	COG5506	Protein of unknown function (DUF1694)
AVM03_09270	COG0628	permease
AVM03_09280	COG1418	mRNA catabolic process
AVM03_09285	COG1028	Short-chain dehydrogenase reductase Sdr
AVM03_09290	COG2508	Transcriptional regulator
AVM03_09290	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
AVM03_09295	COG0686	Belongs to the AlaDH PNT family
AVM03_09300	COG5634	Uncharacterized conserved protein (DUF2278)
AVM03_09305	COG3251	PFAM MbtH domain protein
AVM03_09310	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AVM03_09315	COG3433	isochorismatase activity
AVM03_09315	COG1535	isochorismatase
AVM03_09320	COG1021	2,3-dihydroxybenzoate-AMP ligase
AVM03_09325	COG1169	isochorismate synthase
AVM03_09330	COG1028	Short-chain dehydrogenase reductase Sdr
AVM03_09335	COG2819	hydrolase of the alpha beta superfamily
AVM03_09340	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
AVM03_09345	COG1268	BioY protein
AVM03_09350	COG2056	Na+-H+ antiporter family
AVM03_09360	COG1963	PFAM Acid phosphatase vanadium-dependent haloperoxidase related
AVM03_09365	COG3584	3D domain protein
AVM03_09375	COG1252	NADH dehydrogenase
AVM03_09405	COG1131	(ABC) transporter
AVM03_09430	COG3967	Belongs to the short-chain dehydrogenases reductases (SDR) family
AVM03_09435	COG0316	Belongs to the HesB IscA family
AVM03_09445	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
AVM03_09455	COG1252	NADH dehydrogenase
AVM03_09460	COG4837	Protein of unknown function (DUF1462)
AVM03_09465	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
AVM03_09470	COG0823	Involved in the tonB-independent uptake of proteins
AVM03_09470	COG1506	peptidase
AVM03_09470	COG4946	Tricorn protease homolog
AVM03_09480	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
AVM03_09485	COG0460	homoserine dehydrogenase
AVM03_09490	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
AVM03_09495	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
AVM03_09500	COG0647	UMP catabolic process
AVM03_09505	COG2445	Protein of unknown function DUF86
AVM03_09510	COG4470	Protein conserved in bacteria
AVM03_09520	COG0739	heme binding
AVM03_09530	COG0737	Belongs to the 5'-nucleotidase family
AVM03_09535	COG0730	response to heat
AVM03_09540	COG1801	Protein of unknown function DUF72
AVM03_09555	COG2508	Transcriptional regulator
AVM03_09560	COG0338	D12 class N6 adenine-specific DNA methyltransferase
AVM03_09580	COG2814	Major facilitator Superfamily
AVM03_09585	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
AVM03_09590	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AVM03_09595	COG2356	endonuclease I
AVM03_09600	COG3842	ATPase activity
AVM03_09605	COG2188	Transcriptional regulator
AVM03_09610	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AVM03_09615	COG0395	ABC-type sugar transport system, permease component
AVM03_09620	COG1175	transmembrane transport
AVM03_09625	COG1653	transport
AVM03_09630	COG2222	sugar isomerase
AVM03_09635	COG0789	Transcriptional regulator
AVM03_09660	COG0322	excinuclease ABC activity
AVM03_09665	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AVM03_09670	COG2226	methyltransferase
AVM03_09680	COG3409	Peptidoglycan-binding domain 1 protein
AVM03_09685	COG0719	Fe-S assembly protein
AVM03_09690	COG0822	iron-sulfur transferase activity
AVM03_09695	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
AVM03_09700	COG0719	Fe-S assembly protein
AVM03_09705	COG0396	ATPase activity
AVM03_09710	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
AVM03_09715	COG1464	Belongs to the NlpA lipoprotein family
AVM03_09720	COG2011	ABC-type metal ion transport system permease component
AVM03_09725	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
AVM03_09735	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AVM03_09740	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
AVM03_09755	COG1393	Belongs to the ArsC family
AVM03_09760	COG1960	acyl-CoA dehydrogenase activity
AVM03_09765	COG0183	Belongs to the thiolase family
AVM03_09770	COG1250	3-hydroxyacyl-CoA dehydrogenase
AVM03_09770	COG1024	Enoyl-CoA hydratase
AVM03_09790	COG5577	PFAM Coat F domain
AVM03_09795	COG1846	Transcriptional regulator
AVM03_09800	COG0477	Major facilitator Superfamily
AVM03_09805	COG0583	DNA-binding transcription factor activity
AVM03_09825	COG1120	ATPase activity
AVM03_09840	COG1028	Short-chain dehydrogenase reductase Sdr
AVM03_09845	COG0783	Belongs to the Dps family
AVM03_09850	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AVM03_09855	COG0745	RESPONSE REGULATOR receiver
AVM03_09860	COG2770	Histidine kinase
AVM03_09860	COG2205	protein histidine kinase activity
AVM03_09865	COG1309	transcriptional regulator
AVM03_09870	COG0114	fumarate hydratase activity
AVM03_09880	COG0697	spore germination
AVM03_09885	COG0814	amino acid
AVM03_09895	COG2197	response regulator
AVM03_09900	COG4585	Histidine kinase
AVM03_09905	COG4758	membrane
AVM03_09910	COG3595	metallopeptidase activity
AVM03_09915	COG1842	Phage shock protein A
AVM03_09920	COG4758	membrane
AVM03_09925	COG2814	Major facilitator Superfamily
AVM03_09930	COG2096	Adenosyltransferase
AVM03_09935	COG1120	ATPase activity
AVM03_09940	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AVM03_09945	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
AVM03_09950	COG1028	Short-chain dehydrogenase reductase Sdr
AVM03_09955	COG3386	PFAM SMP-30 Gluconolaconase
AVM03_09960	COG2205	protein histidine kinase activity
AVM03_09965	COG0745	RESPONSE REGULATOR receiver
AVM03_09975	COG1191	sigma factor activity
AVM03_09980	COG2140	Oxalate decarboxylase
AVM03_09990	COG1120	ATPase activity
AVM03_09995	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AVM03_10000	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AVM03_10005	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
AVM03_10010	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
AVM03_10015	COG0531	amino acid
AVM03_10025	COG1988	membrane-bound metal-dependent
AVM03_10030	COG1368	sulfuric ester hydrolase activity
AVM03_10035	COG1910	domain protein
AVM03_10040	COG0725	ABC transporter, periplasmic molybdate-binding protein
AVM03_10045	COG4149	molybdate abc transporter
AVM03_10050	COG2197	response regulator
AVM03_10055	COG3850	Histidine kinase
AVM03_10060	COG1131	(ABC) transporter
AVM03_10070	COG0842	Transport permease protein
AVM03_10075	COG0656	L-ascorbic acid biosynthetic process
AVM03_10100	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
AVM03_10105	COG3973	AAA domain
AVM03_10110	COG2860	membrane
AVM03_10120	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
AVM03_10125	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AVM03_10130	COG2217	Heavy metal translocating P-type atpase
AVM03_10135	COG2217	Heavy metal translocating P-type atpase
AVM03_10140	COG2608	mercury ion transmembrane transporter activity
AVM03_10145	COG1937	Protein conserved in bacteria
AVM03_10150	COG0673	inositol 2-dehydrogenase activity
AVM03_10165	COG2814	Major facilitator Superfamily
AVM03_10180	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AVM03_10185	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
AVM03_10190	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AVM03_10195	COG1126	abc transporter atp-binding protein
AVM03_10200	COG0765	amino acid transport
AVM03_10205	COG0765	amino acid transport
AVM03_10210	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AVM03_10215	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AVM03_10220	COG0454	-acetyltransferase
AVM03_10225	COG0583	DNA-binding transcription factor activity
AVM03_10230	COG1028	Short-chain dehydrogenase reductase Sdr
AVM03_10235	COG2732	(Barnase) inhibitor
AVM03_10245	COG0557	exoribonuclease II activity
AVM03_10250	COG1647	Serine aminopeptidase, S33
AVM03_10255	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
AVM03_10260	COG1476	TRANSCRIPTIONal
AVM03_10265	COG1396	sequence-specific DNA binding
AVM03_10270	COG1396	sequence-specific DNA binding
AVM03_10275	COG1733	regulation of RNA biosynthetic process
AVM03_10305	COG1174	glycine betaine transport
AVM03_10310	COG1732	Glycine betaine
AVM03_10315	COG1174	glycine betaine transport
AVM03_10320	COG1125	glycine betaine transport
AVM03_10320	COG0517	IMP dehydrogenase activity
AVM03_10325	COG1510	regulation of RNA biosynthetic process
AVM03_10330	COG1174	glycine betaine transport
AVM03_10335	COG1732	Glycine betaine
AVM03_10340	COG1174	glycine betaine transport
AVM03_10345	COG0517	IMP dehydrogenase activity
AVM03_10345	COG1125	glycine betaine transport
AVM03_10350	COG1510	regulation of RNA biosynthetic process
AVM03_10355	COG2095	MarC family integral membrane protein
AVM03_10360	COG3064	Membrane
AVM03_10365	COG4640	response to antibiotic
AVM03_10370	COG0456	acetyltransferase
AVM03_10385	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
AVM03_10400	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
AVM03_10405	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AVM03_10410	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
AVM03_10420	COG2234	aminopeptidase activity
AVM03_10440	COG0126	phosphoglycerate kinase activity
AVM03_10450	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
AVM03_10455	COG2390	Transcriptional regulator
AVM03_10460	COG2814	Major facilitator Superfamily
AVM03_10465	COG1609	Transcriptional regulator
AVM03_10470	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AVM03_10480	COG0583	DNA-binding transcription factor activity
AVM03_10485	COG0697	spore germination
AVM03_10490	COG1113	amino acid transport
AVM03_10495	COG1737	Transcriptional regulator
AVM03_10500	COG1070	Carbohydrate kinase
AVM03_10525	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AVM03_10530	COG2186	Transcriptional regulator
AVM03_10535	COG1620	l-lactate permease
AVM03_10540	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
AVM03_10550	COG5039	Polysaccharide pyruvyl transferase
AVM03_10555	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
AVM03_10560	COG0110	maltose O-acetyltransferase activity
AVM03_10565	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
AVM03_10570	COG2244	polysaccharide biosynthetic process
AVM03_10575	COG1216	Glycosyl transferase, family 2
AVM03_10580	COG5039	Polysaccharide pyruvyl transferase
AVM03_10585	COG1216	Glycosyl transferase, family 2
AVM03_10595	COG0438	transferase activity, transferring glycosyl groups
AVM03_10600	COG1215	transferase activity, transferring glycosyl groups
AVM03_10605	COG0438	transferase activity, transferring glycosyl groups
AVM03_10610	COG1086	Polysaccharide biosynthesis protein
AVM03_10615	COG0489	protein tyrosine kinase activity
AVM03_10620	COG3944	biosynthesis protein
AVM03_10625	COG1396	sequence-specific DNA binding
AVM03_10630	COG2272	Belongs to the type-B carboxylesterase lipase family
AVM03_10640	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
AVM03_10645	COG2364	Membrane
AVM03_10650	COG0456	acetyltransferase
AVM03_10655	COG3479	Phenolic acid decarboxylase
AVM03_10705	COG2223	nitrite transmembrane transporter activity
AVM03_10710	COG1609	Transcriptional regulator
AVM03_10720	COG0583	DNA-binding transcription factor activity
AVM03_10725	COG2828	Protein conserved in bacteria
AVM03_10730	COG0477	Major facilitator Superfamily
AVM03_10730	COG2814	Major facilitator Superfamily
AVM03_10735	COG1611	Belongs to the LOG family
AVM03_10740	COG1694	Mazg nucleotide pyrophosphohydrolase
AVM03_10745	COG0659	secondary active sulfate transmembrane transporter activity
AVM03_10750	COG0288	reversible hydration of carbon dioxide
AVM03_10755	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AVM03_10760	COG4290	ribonuclease
AVM03_10765	COG2162	N-hydroxyarylamine O-acetyltransferase activity
AVM03_10770	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
AVM03_10780	COG0391	Required for morphogenesis under gluconeogenic growth conditions
AVM03_10790	COG1051	belongs to the nudix hydrolase family
AVM03_10795	COG0492	ferredoxin-NADP+ reductase activity
AVM03_10800	COG0791	NLP P60 protein
AVM03_10800	COG3883	PFAM NLP P60 protein
AVM03_10810	COG0457	Tetratricopeptide repeat
AVM03_10815	COG5002	protein histidine kinase activity
AVM03_10820	COG0745	RESPONSE REGULATOR receiver
AVM03_10830	COG1132	(ABC) transporter
AVM03_10835	COG0140	phosphoribosyl-ATP diphosphatase activity
AVM03_10835	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
AVM03_10860	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
AVM03_10875	COG4990	cell redox homeostasis
AVM03_10880	COG0110	maltose O-acetyltransferase activity
AVM03_10900	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
AVM03_10915	COG1309	transcriptional regulator
AVM03_10920	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
AVM03_10925	COG1950	PFAM Membrane protein of
AVM03_10930	COG1983	PspC domain protein
AVM03_10935	COG3595	metallopeptidase activity
AVM03_10950	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
AVM03_10960	COG4897	Protein conserved in bacteria
AVM03_10965	COG3848	Pyruvate phosphate dikinase
AVM03_10965	COG0574	Belongs to the PEP-utilizing enzyme family
AVM03_10970	COG1309	transcriptional regulator
AVM03_10975	COG2814	Major facilitator Superfamily
AVM03_10985	COG3328	transposase activity
AVM03_11000	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AVM03_11010	COG3409	Peptidoglycan-binding domain 1 protein
AVM03_11010	COG0793	Belongs to the peptidase S41A family
AVM03_11015	COG3420	alginic acid biosynthetic process
AVM03_11020	COG2177	Part of the ABC transporter FtsEX involved in
AVM03_11025	COG2884	Cell division ATP-binding protein ftsE
AVM03_11030	COG2010	Cytochrome c
AVM03_11035	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
AVM03_11040	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
AVM03_11050	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
AVM03_11065	COG1516	flagellar protein fliS
AVM03_11070	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
AVM03_11075	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AVM03_11095	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AVM03_11100	COG4786	Flagellar basal body rod
AVM03_11100	COG1256	bacterial-type flagellum assembly
AVM03_11105	COG3418	PFAM FlgN family protein
AVM03_11110	COG2747	anti-sigma28 factor FlgM
AVM03_11120	COG1040	competence protein
AVM03_11130	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
AVM03_11135	COG1307	EDD domain protein, DegV family
AVM03_11140	COG2197	response regulator
AVM03_11145	COG4585	Histidine kinase
AVM03_11150	COG1739	Uncharacterized protein family UPF0029
AVM03_11155	COG1316	TRANSCRIPTIONal
AVM03_11160	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
AVM03_11165	COG0438	transferase activity, transferring glycosyl groups
AVM03_11170	COG1215	transferase activity, transferring glycosyl groups
AVM03_11175	COG3206	protein involved in exopolysaccharide biosynthesis
AVM03_11180	COG3307	-O-antigen
AVM03_11185	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
AVM03_11190	COG0297	glycogen (starch) synthase activity
AVM03_11190	COG0438	transferase activity, transferring glycosyl groups
AVM03_11195	COG2244	polysaccharide biosynthetic process
AVM03_11205	COG2247	cell wall binding repeat
AVM03_11205	COG0860	N-Acetylmuramoyl-L-alanine amidase
AVM03_11210	COG2247	cell wall binding repeat
AVM03_11210	COG2385	sporulation resulting in formation of a cellular spore
AVM03_11220	COG1316	TRANSCRIPTIONal
AVM03_11225	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
AVM03_11230	COG1210	Utp--glucose-1-phosphate uridylyltransferase
AVM03_11235	COG1134	teichoic acid transport
AVM03_11240	COG1682	transport, permease protein
AVM03_11245	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
AVM03_11255	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
AVM03_11260	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
AVM03_11265	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
AVM03_11270	COG4193	domain, Protein
AVM03_11275	COG1482	cell wall glycoprotein biosynthetic process
AVM03_11280	COG0697	spore germination
AVM03_11285	COG0814	amino acid
AVM03_11295	COG1215	transferase activity, transferring glycosyl groups
AVM03_11300	COG2814	Major facilitator Superfamily
AVM03_11305	COG1316	TRANSCRIPTIONal
AVM03_11310	COG0561	phosphatase activity
AVM03_11315	COG2433	Pfam Transposase IS66
AVM03_11320	COG0791	NLP P60 protein
AVM03_11325	COG2843	Capsule synthesis protein
AVM03_11335	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
AVM03_11340	COG0697	spore germination
AVM03_11345	COG0814	amino acid
AVM03_11355	COG1609	Transcriptional regulator
AVM03_11360	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AVM03_11370	COG1129	ABC transporter
AVM03_11375	COG1172	Belongs to the binding-protein-dependent transport system permease family
AVM03_11380	COG1879	ABC-type sugar transport system periplasmic component
AVM03_11385	COG3103	Sh3 type 3 domain protein
AVM03_11390	COG2249	NAD(P)H dehydrogenase (quinone) activity
AVM03_11395	COG3527	Alpha-acetolactate decarboxylase
AVM03_11400	COG0028	Belongs to the TPP enzyme family
AVM03_11405	COG0583	DNA-binding transcription factor activity
AVM03_11410	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
AVM03_11425	COG5337	Spore coat protein CotH
AVM03_11435	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AVM03_11445	COG0405	Gamma-glutamyltransferase
AVM03_11450	COG1522	sequence-specific DNA binding
AVM03_11455	COG2059	Chromate
AVM03_11460	COG2059	Chromate
AVM03_11470	COG0655	NAD(P)H dehydrogenase (quinone) activity
AVM03_11475	COG0583	DNA-binding transcription factor activity
AVM03_11485	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
AVM03_11490	COG4464	protein tyrosine phosphatase activity
AVM03_11495	COG0489	protein tyrosine kinase activity
AVM03_11500	COG3944	biosynthesis protein
AVM03_11510	COG4715	Zinc finger, swim domain protein
AVM03_11515	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
AVM03_11520	COG0561	phosphatase activity
AVM03_11525	COG1349	DNA-binding transcription factor activity
AVM03_11530	COG0629	single-stranded DNA binding
AVM03_11555	COG0457	Tetratricopeptide repeat
AVM03_11560	COG4786	Flagellar basal body rod
AVM03_11565	COG4786	Flagellar basal body rod
AVM03_11570	COG1077	Cell shape determining protein MreB Mrl
AVM03_11575	COG1609	Transcriptional regulator
AVM03_11580	COG1846	Transcriptional regulator
AVM03_11585	COG2814	Major facilitator Superfamily
AVM03_11590	COG1953	Uracil, thiamine, allantoin
AVM03_11595	COG0477	Major facilitator Superfamily
AVM03_11600	COG1335	isochorismatase
AVM03_11605	COG0004	ammonium transporteR
AVM03_11610	COG0347	Belongs to the P(II) protein family
AVM03_11615	COG0772	Belongs to the SEDS family
AVM03_11620	COG0671	phosphoesterase, PA-phosphatase related
AVM03_11630	COG0739	heme binding
AVM03_11635	COG1247	-acetyltransferase
AVM03_11650	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AVM03_11660	COG0726	polysaccharide deacetylase
AVM03_11670	COG1959	2 iron, 2 sulfur cluster binding
AVM03_11685	COG0831	urea catabolic process
AVM03_11690	COG3237	CsbD-like
AVM03_11695	COG1994	Peptidase M50
AVM03_11700	COG0457	Tetratricopeptide repeat
AVM03_11710	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
AVM03_11715	COG2304	oxidoreductase activity
AVM03_11720	COG2304	oxidoreductase activity
AVM03_11725	COG2385	sporulation resulting in formation of a cellular spore
AVM03_11730	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
AVM03_11740	COG4836	Membrane
AVM03_11780	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
AVM03_11810	COG0698	ribose 5-phosphate isomerase
AVM03_11815	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
AVM03_11825	COG0009	L-threonylcarbamoyladenylate synthase
AVM03_11830	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
AVM03_11850	COG2890	protein-(glutamine-N5) methyltransferase activity
AVM03_11855	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
AVM03_11860	COG0346	lactoylglutathione lyase activity
AVM03_11865	COG0789	Transcriptional regulator
AVM03_11870	COG0679	Auxin Efflux Carrier
AVM03_11875	COG0281	malic enzyme
AVM03_11885	COG0254	rRNA binding
AVM03_11890	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
AVM03_11895	COG1494	fructose-1,6-bisphosphatase
AVM03_11900	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
AVM03_11910	COG0191	fructose-bisphosphate aldolase activity
AVM03_11915	COG2204	response regulator
AVM03_11920	COG4821	SIS domain
AVM03_11935	COG2181	nitrate reductase activity
AVM03_11935	COG0247	lactate metabolic process
AVM03_11940	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AVM03_11955	COG1132	(ABC) transporter
AVM03_11960	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AVM03_11970	COG2181	nitrate reductase activity
AVM03_11975	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
AVM03_11980	COG1140	nitrate reductase beta subunit
AVM03_11985	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
AVM03_11990	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AVM03_12000	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AVM03_12005	COG2223	nitrite transmembrane transporter activity
AVM03_12015	COG4506	Protein conserved in bacteria
AVM03_12020	COG0457	Tetratricopeptide repeat
AVM03_12025	COG0010	Belongs to the arginase family
AVM03_12030	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
AVM03_12035	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AVM03_12050	COG1994	Peptidase M50
AVM03_12055	COG1942	4-Oxalocrotonate Tautomerase
AVM03_12060	COG1846	Transcriptional regulator
AVM03_12070	COG0531	amino acid
AVM03_12075	COG3465	dGTPase activity
AVM03_12080	COG1078	dGTPase activity
AVM03_12095	COG1695	Transcriptional regulator
AVM03_12110	COG0583	DNA-binding transcription factor activity
AVM03_12115	COG2855	membrane
AVM03_12120	COG0280	phosphate acetyltransferase
AVM03_12130	COG1028	Short-chain dehydrogenase reductase Sdr
AVM03_12135	COG0436	Aminotransferase
AVM03_12165	COG2814	Major facilitator Superfamily
AVM03_12170	COG2814	Major facilitator Superfamily
AVM03_12175	COG0833	amino acid
AVM03_12180	COG4187	Peptidase family M20/M25/M40
AVM03_12185	COG1012	belongs to the aldehyde dehydrogenase family
AVM03_12190	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
AVM03_12200	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
AVM03_12205	COG1091	dTDP-4-dehydrorhamnose reductase activity
AVM03_12210	COG1088	dTDP-glucose 4,6-dehydratase activity
AVM03_12215	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
AVM03_12220	COG3980	spore coat polysaccharide biosynthesis protein
AVM03_12225	COG1861	Spore coat polysaccharide biosynthesis protein F CMP-KDO synthetase
AVM03_12230	COG2089	acid synthase
AVM03_12235	COG0456	acetyltransferase
AVM03_12240	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
AVM03_12245	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
AVM03_12250	COG0463	Glycosyl transferase, family 2
AVM03_12260	COG2363	Small membrane protein
AVM03_12265	COG2233	PERMEase
AVM03_12280	COG1216	Glycosyl transferase, family 2
AVM03_12295	COG1695	Transcriptional regulator
AVM03_12300	COG0351	phosphomethylpyrimidine kinase
AVM03_12310	COG1621	beta-fructofuranosidase activity
AVM03_12315	COG1263	PTS System
AVM03_12315	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AVM03_12320	COG3711	transcriptional antiterminator
AVM03_12330	COG1404	Belongs to the peptidase S8 family
AVM03_12335	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AVM03_12340	COG0778	Nitroreductase
AVM03_12345	COG0772	Belongs to the SEDS family
AVM03_12350	COG0454	-acetyltransferase
AVM03_12370	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
AVM03_12375	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
AVM03_12380	COG2261	transglycosylase associated protein
AVM03_12385	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
AVM03_12390	COG2246	polysaccharide biosynthetic process
AVM03_12395	COG1309	transcriptional regulator
AVM03_12415	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
AVM03_12420	COG2837	iron assimilation
AVM03_12425	COG2822	iron ion transport
AVM03_12445	COG0583	DNA-binding transcription factor activity
AVM03_12455	COG1346	cytolysis
AVM03_12460	COG4895	conserved protein (DUF2196)
AVM03_12465	COG0789	Transcriptional regulator
AVM03_12470	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
AVM03_12475	COG0346	lactoylglutathione lyase activity
AVM03_12480	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
AVM03_12485	COG1404	Belongs to the peptidase S8 family
AVM03_12490	COG1442	glycosyl transferase family 8
AVM03_12495	COG2357	RelA SpoT domain protein
AVM03_12500	COG1575	Belongs to the MenA family. Type 1 subfamily
AVM03_12515	COG1696	Membrane protein involved in D-alanine export
AVM03_12525	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
AVM03_12530	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
AVM03_12535	COG1486	melibiose metabolic process
AVM03_12540	COG1447	Phosphotransferase system cellobiose-specific component IIA
AVM03_12545	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
AVM03_12550	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
AVM03_12555	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
AVM03_12555	COG3711	transcriptional antiterminator
AVM03_12565	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AVM03_12570	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AVM03_12580	COG0640	Transcriptional regulator
AVM03_12585	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
AVM03_12590	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
AVM03_12595	COG1447	Phosphotransferase system cellobiose-specific component IIA
AVM03_12600	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
AVM03_12605	COG2723	6-phospho-beta-galactosidase activity
AVM03_12610	COG1940	carbohydrate kinase activity
AVM03_12615	COG1482	cell wall glycoprotein biosynthetic process
AVM03_12625	COG0753	catalase activity
AVM03_12630	COG3049	Linear amide C-N hydrolases, choloylglycine hydrolase family
AVM03_12635	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
AVM03_12640	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
AVM03_12645	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
AVM03_12650	COG4988	ABC transporter
AVM03_12655	COG1294	oxidase, subunit
AVM03_12660	COG1271	oxidase subunit
AVM03_12665	COG3493	citrate carrier protein
AVM03_12670	COG0726	polysaccharide deacetylase
AVM03_12675	COG3842	ATPase activity
AVM03_12680	COG2508	Transcriptional regulator
AVM03_12685	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
AVM03_12695	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
AVM03_12705	COG4894	glucomannan catabolic process
AVM03_12710	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
AVM03_12715	COG0500	methyltransferase
AVM03_12720	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
AVM03_12735	COG0753	catalase activity
AVM03_12735	COG0693	protein deglycase activity
AVM03_12740	COG2851	Citrate transporter
AVM03_12745	COG2273	Hydrolase Family 16
AVM03_12755	COG2270	Major facilitator Superfamily
AVM03_12760	COG0513	Belongs to the DEAD box helicase family
AVM03_12820	COG0697	spore germination
AVM03_12825	COG0589	response to stress
AVM03_12885	COG0010	Belongs to the arginase family
AVM03_12890	COG0833	amino acid
AVM03_12895	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
AVM03_12900	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
AVM03_12910	COG2390	Transcriptional regulator
AVM03_12915	COG0561	phosphatase activity
AVM03_12945	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
AVM03_12950	COG5294	Protein conserved in bacteria
AVM03_12955	COG0577	efflux transmembrane transporter activity
AVM03_12960	COG1136	(ABC) transporter
AVM03_12965	COG2205	protein histidine kinase activity
AVM03_12970	COG0745	RESPONSE REGULATOR receiver
AVM03_12975	COG2205	protein histidine kinase activity
AVM03_12980	COG0745	RESPONSE REGULATOR receiver
AVM03_13005	COG0745	RESPONSE REGULATOR receiver
AVM03_13035	COG1082	Xylose isomerase domain protein TIM barrel
AVM03_13045	COG2814	Major facilitator Superfamily
AVM03_13075	COG1349	DNA-binding transcription factor activity
AVM03_13080	COG0667	Aldo Keto reductase
AVM03_13085	COG2814	Major facilitator Superfamily
AVM03_13100	COG1028	Short-chain dehydrogenase reductase Sdr
AVM03_13105	COG2197	response regulator
AVM03_13110	COG4585	Histidine kinase
AVM03_13115	COG3239	Fatty acid desaturase
AVM03_13125	COG1309	transcriptional regulator
AVM03_13130	COG1012	belongs to the aldehyde dehydrogenase family
AVM03_13135	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AVM03_13145	COG0640	Transcriptional regulator
AVM03_13150	COG2814	Major facilitator Superfamily
AVM03_13155	COG1714	RDD family
AVM03_13165	COG0450	alkyl hydroperoxide reductase
AVM03_13170	COG3634	alkyl hydroperoxide reductase activity
AVM03_13175	COG1113	amino acid transport
AVM03_13185	COG2080	2 iron, 2 sulfur cluster binding
AVM03_13200	COG2068	MobA-Related Protein
AVM03_13205	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
AVM03_13220	COG0270	DNA (cytosine-5-)-methyltransferase activity
AVM03_13260	COG3863	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
AVM03_13265	COG0667	Aldo Keto reductase
AVM03_13270	COG0456	acetyltransferase
AVM03_13275	COG0457	Tetratricopeptide repeat
AVM03_13280	COG0010	Belongs to the arginase family
AVM03_13285	COG0833	amino acid
AVM03_13290	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AVM03_13295	COG5658	integral membrane protein
AVM03_13300	COG0640	Transcriptional regulator
AVM03_13305	COG3829	transcription factor binding
AVM03_13315	COG0488	(ABC) transporter
AVM03_13330	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
AVM03_13335	COG5002	protein histidine kinase activity
AVM03_13345	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AVM03_13350	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
AVM03_13355	COG4853	Protein conserved in bacteria
AVM03_13360	COG4863	YycH protein
AVM03_13365	COG5002	protein histidine kinase activity
AVM03_13370	COG0745	RESPONSE REGULATOR receiver
AVM03_13405	COG0346	lactoylglutathione lyase activity
AVM03_13410	COG0305	Participates in initiation and elongation during chromosome replication
AVM03_13425	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
AVM03_13430	COG0297	glycogen (starch) synthase activity
AVM03_13440	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
AVM03_13445	COG0438	transferase activity, transferring glycosyl groups
AVM03_13455	COG0515	serine threonine protein kinase
AVM03_13465	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
AVM03_13470	COG4241	membrane
AVM03_13475	COG5577	PFAM Coat F domain
AVM03_13480	COG1733	regulation of RNA biosynthetic process
AVM03_13500	COG0697	spore germination
AVM03_13505	COG1621	beta-fructofuranosidase activity
AVM03_13510	COG1621	beta-fructofuranosidase activity
AVM03_13515	COG1802	Transcriptional regulator
AVM03_13520	COG2318	DinB family
AVM03_13525	COG2211	Major facilitator Superfamily
AVM03_13530	COG0697	spore germination
AVM03_13535	COG0789	Transcriptional regulator
AVM03_13540	COG0583	DNA-binding transcription factor activity
AVM03_13550	COG2814	Major facilitator Superfamily
AVM03_13555	COG0583	DNA-binding transcription factor activity
AVM03_13565	COG0778	Nitroreductase
AVM03_13570	COG1846	Transcriptional regulator
AVM03_13575	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
AVM03_13580	COG1846	Transcriptional regulator
AVM03_13600	COG0583	DNA-binding transcription factor activity
AVM03_13605	COG1028	Short-chain dehydrogenase reductase Sdr
AVM03_13610	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AVM03_13615	COG0697	spore germination
AVM03_13620	COG0789	Transcriptional regulator
AVM03_13620	COG4978	Transcriptional regulator
AVM03_13625	COG1811	Na channel or pump
AVM03_13630	COG1331	Highly conserved protein containing a thioredoxin domain
AVM03_13635	COG1266	CAAX protease self-immunity
AVM03_13640	COG0477	Major facilitator Superfamily
AVM03_13640	COG2814	Major facilitator Superfamily
AVM03_13645	COG0346	lactoylglutathione lyase activity
AVM03_13650	COG1609	Transcriptional regulator
AVM03_13655	COG0708	Exodeoxyribonuclease III
AVM03_13660	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
AVM03_13665	COG2169	Transcriptional regulator
AVM03_13675	COG0629	single-stranded DNA binding
AVM03_13685	COG0012	GTP binding
AVM03_13690	COG0243	molybdopterin cofactor binding
AVM03_13695	COG4481	Protein conserved in bacteria
AVM03_13700	COG3949	Membrane
AVM03_13715	COG1475	DNA binding
AVM03_13720	COG1192	Involved in chromosome partitioning
AVM03_13745	COG1847	R3H domain protein
AVM03_13750	COG0706	membrane insertase activity
AVM03_13765	COG0592	DNA-directed DNA polymerase activity
AVM03_13770	COG2501	S4 domain
AVM03_13785	COG0187	DNA topoisomerase II activity
AVM03_13790	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
AVM03_13825	COG0517	IMP dehydrogenase activity
AVM03_13825	COG0516	GMP reductase activity
AVM03_13830	COG1686	Belongs to the peptidase S11 family
AVM03_13850	COG1929	Belongs to the glycerate kinase type-1 family
AVM03_13860	COG1428	Deoxynucleoside kinase
AVM03_13865	COG1428	Deoxynucleoside kinase
AVM03_13870	COG3858	chitin binding
AVM03_13870	COG1388	LysM domain
AVM03_13875	COG1335	isochorismatase
AVM03_13880	COG0590	tRNA wobble adenosine to inosine editing
AVM03_13885	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
AVM03_13890	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
AVM03_13940	COG4915	5-bromo-4-chloroindolyl phosphate hydrolysis protein
AVM03_13945	COG3853	Toxic anion resistance protein (TelA)
AVM03_13950	COG1982	Orn Lys Arg decarboxylase major
AVM03_13960	COG3870	Protein conserved in bacteria
AVM03_13965	COG1728	Protein conserved in bacteria
AVM03_13970	COG0470	DNA polymerase III
AVM03_13975	COG1774	PSP1 C-terminal conserved region
AVM03_13985	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
AVM03_13995	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
AVM03_14000	COG2002	toxin-antitoxin pair type II binding
AVM03_14005	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AVM03_14005	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AVM03_14010	COG0084	hydrolase, TatD family'
AVM03_14015	COG3584	3D domain protein
AVM03_14015	COG3583	domain protein
AVM03_14020	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
AVM03_14025	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
AVM03_14035	COG4466	Protein conserved in bacteria
AVM03_14050	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
AVM03_14055	COG0251	oxidation-reduction process
AVM03_14070	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
AVM03_14090	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
AVM03_14095	COG2002	toxin-antitoxin pair type II binding
AVM03_14100	COG2244	polysaccharide biosynthetic process
AVM03_14105	COG3956	TIGRFAM MazG family protein
AVM03_14110	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
AVM03_14125	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
AVM03_14130	COG1098	S1 RNA binding domain
AVM03_14145	COG2208	phosphoserine phosphatase activity
AVM03_14150	COG2304	oxidoreductase activity
AVM03_14155	COG0515	serine threonine protein kinase
AVM03_14160	COG0037	tRNA processing
AVM03_14170	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AVM03_14185	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AVM03_14190	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
AVM03_14195	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
AVM03_14200	COG0512	Glutamine amidotransferase of anthranilate synthase
AVM03_14205	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
AVM03_14210	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
AVM03_14215	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
AVM03_14220	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
AVM03_14225	COG1396	sequence-specific DNA binding
AVM03_14230	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
AVM03_14235	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
AVM03_14315	COG4463	regulation of RNA biosynthetic process
AVM03_14320	COG3880	PFAM UvrB UvrC protein
AVM03_14330	COG0542	response to heat
AVM03_14345	COG1132	(ABC) transporter
AVM03_14355	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
AVM03_14360	COG1623	Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c- di-AMP acts as a signaling molecule that couples DNA integrity with progression of sporulation. The rise in c-di-AMP level generated by DisA while scanning the chromosome, operates as a positive signal that advances sporulation
AVM03_14365	COG4956	integral membrane protein (PIN domain superfamily)
AVM03_14385	COG1045	serine acetyltransferase
AVM03_14395	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
AVM03_14400	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AVM03_14405	COG3688	RNA-binding protein containing a PIN domain
AVM03_14410	COG1595	DNA-templated transcription, initiation
AVM03_14415	COG0267	Belongs to the bacterial ribosomal protein bL33 family
AVM03_14420	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
AVM03_14425	COG0250	Participates in transcription elongation, termination and antitermination
AVM03_14430	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
AVM03_14445	COG0222	ribosome binding
AVM03_14450	COG2813	Specifically methylates the guanine in position
AVM03_14465	COG1358	cellular component organization or biogenesis
AVM03_14490	COG0596	Alpha beta hydrolase
AVM03_14495	COG0051	transcription antitermination factor activity, RNA binding
AVM03_14510	COG0089	rRNA binding
AVM03_14520	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
AVM03_14525	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
AVM03_14535	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
AVM03_14540	COG0255	Belongs to the universal ribosomal protein uL29 family
AVM03_14550	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
AVM03_14585	COG1841	ribosomal large subunit assembly
AVM03_14595	COG0201	protein transport
AVM03_14605	COG0024	Methionine aminopeptidase
AVM03_14610	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
AVM03_14615	COG0257	Belongs to the bacterial ribosomal protein bL36 family
AVM03_14640	COG1122	ATPase activity
AVM03_14645	COG1122	ATPase activity
AVM03_14650	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
AVM03_14670	COG2226	methyltransferase
AVM03_14675	COG2318	DinB family
AVM03_14685	COG0860	N-Acetylmuramoyl-L-alanine amidase
AVM03_14690	COG0489	protein tyrosine kinase activity
AVM03_14700	COG2194	sulfuric ester hydrolase activity
AVM03_14705	COG0726	polysaccharide deacetylase
AVM03_14765	COG0738	Major facilitator superfamily
AVM03_14770	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
AVM03_14785	COG0659	secondary active sulfate transmembrane transporter activity
AVM03_14790	COG0385	Bile acid
AVM03_14795	COG2819	hydrolase of the alpha beta superfamily
AVM03_14800	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AVM03_14805	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AVM03_14810	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
AVM03_14815	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
AVM03_14815	COG2207	Transcriptional regulator
AVM03_14820	COG3876	Protein conserved in bacteria
AVM03_14825	COG1472	Belongs to the glycosyl hydrolase 3 family
AVM03_14830	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
AVM03_14835	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AVM03_14835	COG1263	PTS System
AVM03_14845	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AVM03_14850	COG1683	Conserved Protein
AVM03_14880	COG1595	DNA-templated transcription, initiation
AVM03_14885	COG5662	AntiSigma factor
AVM03_14890	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
AVM03_14895	COG4856	YbbR-like protein
AVM03_14935	COG1346	cytolysis
AVM03_14940	COG1380	Effector of murein hydrolase LrgA
AVM03_14945	COG1846	Transcriptional regulator
AVM03_14950	COG1113	amino acid transport
AVM03_14955	COG1011	Hydrolase
AVM03_14960	COG4585	Histidine kinase
AVM03_14965	COG2197	response regulator
AVM03_14970	COG1131	(ABC) transporter
AVM03_15010	COG0531	amino acid
AVM03_15015	COG0584	glycerophosphoryl diester phosphodiesterase
AVM03_15020	COG2271	Major facilitator Superfamily
AVM03_15030	COG2368	4-hydroxyphenylacetate
AVM03_15040	COG3409	Peptidoglycan-binding domain 1 protein
AVM03_15055	COG0371	Dehydrogenase
AVM03_15065	COG1183	phosphatidylcholine synthase activity
AVM03_15070	COG0586	Pfam SNARE associated Golgi protein
AVM03_15075	COG0688	phosphatidylethanolamine metabolic process
AVM03_15090	COG1301	dicarboxylic acid transport
AVM03_15095	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
AVM03_15100	COG0833	amino acid
AVM03_15105	COG2040	homocysteine
AVM03_15110	COG1115	amino acid carrier protein
AVM03_15115	COG2066	Belongs to the glutaminase family
AVM03_15120	COG4191	Histidine kinase
AVM03_15125	COG0784	Response regulator, receiver
AVM03_15130	COG3173	Aminoglycoside phosphotransferase
AVM03_15140	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
AVM03_15145	COG0778	Nitroreductase
AVM03_15150	COG0346	lactoylglutathione lyase activity
AVM03_15155	COG2259	Doxx family
AVM03_15160	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AVM03_15170	COG3773	Cell wall hydrolase
AVM03_15175	COG3540	Alkaline phosphatase
AVM03_15180	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
AVM03_15185	COG0805	protein transport
AVM03_15195	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
AVM03_15200	COG0477	Major facilitator Superfamily
AVM03_15205	COG1309	transcriptional regulator
AVM03_15215	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
AVM03_15220	COG3012	SEC-C Motif Domain Protein
AVM03_15220	COG1405	negative regulation of cell septum assembly
AVM03_15225	COG0667	Aldo Keto reductase
AVM03_15235	COG1595	DNA-templated transcription, initiation
AVM03_15240	COG1595	DNA-templated transcription, initiation
AVM03_15245	COG1876	peptidase activity
AVM03_15250	COG0457	Tetratricopeptide repeat
AVM03_15255	COG1028	Short-chain dehydrogenase reductase Sdr
AVM03_15260	COG0366	Alpha amylase catalytic
AVM03_15265	COG0803	Belongs to the bacterial solute-binding protein 9 family
AVM03_15270	COG1121	(ABC) transporter
AVM03_15275	COG1108	ABC-type Mn2 Zn2 transport systems permease components
AVM03_15280	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AVM03_15285	COG2310	stress, protein
AVM03_15290	COG2310	stress, protein
AVM03_15295	COG2310	stress, protein
AVM03_15300	COG0861	Integral membrane protein TerC family
AVM03_15310	COG3853	Toxic anion resistance protein (TelA)
AVM03_15315	COG0477	Major facilitator Superfamily
AVM03_15320	COG0517	IMP dehydrogenase activity
AVM03_15320	COG4175	Glycine betaine
AVM03_15325	COG4176	ABC-type proline glycine betaine transport system permease component
AVM03_15330	COG2113	Glycine betaine
AVM03_15335	COG1473	amidohydrolase
AVM03_15340	COG1288	antiporter activity
AVM03_15350	COG0366	Alpha amylase catalytic
AVM03_15360	COG2814	Major facilitator Superfamily
AVM03_15365	COG1846	Transcriptional regulator
AVM03_15370	COG1280	lysine exporter protein (LysE YggA)
AVM03_15375	COG3403	YqcI/YcgG family
AVM03_15380	COG1113	amino acid transport
AVM03_15385	COG3665	Urea carboxylase-associated protein
AVM03_15400	COG1660	Displays ATPase and GTPase activities
AVM03_15410	COG2271	Major facilitator Superfamily
AVM03_15415	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
AVM03_15420	COG3458	cephalosporin-C deacetylase activity
AVM03_15425	COG3541	Predicted nucleotidyltransferase
AVM03_15430	COG0506	proline dehydrogenase activity
AVM03_15435	COG1012	belongs to the aldehyde dehydrogenase family
AVM03_15440	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AVM03_15445	COG2508	Transcriptional regulator
AVM03_15455	COG1587	Uroporphyrinogen-III synthase
AVM03_15455	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
AVM03_15460	COG2146	nitrite reductase [NAD(P)H] activity
AVM03_15465	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AVM03_15470	COG0523	cobalamin synthesis protein
AVM03_15475	COG1063	alcohol dehydrogenase
AVM03_15480	COG1714	RDD family
AVM03_15500	COG3209	COG3209 Rhs family protein
AVM03_15505	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
AVM03_15510	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
AVM03_15515	COG1733	regulation of RNA biosynthetic process
AVM03_15520	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AVM03_15525	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AVM03_15530	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AVM03_15535	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
AVM03_15550	COG2364	Membrane
AVM03_15555	COG1126	abc transporter atp-binding protein
AVM03_15560	COG0765	amino acid transport
AVM03_15565	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AVM03_15570	COG0583	DNA-binding transcription factor activity
AVM03_15575	COG0163	prenyltransferase activity
AVM03_15580	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
AVM03_15595	COG3104	oligopeptide transport
AVM03_15600	COG5434	Belongs to the glycosyl hydrolase 28 family
AVM03_15610	COG0697	spore germination
AVM03_15620	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
AVM03_15635	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AVM03_15640	COG0765	amino acid transport
AVM03_15645	COG1126	abc transporter atp-binding protein
AVM03_15655	COG2079	MmgE PrpD family protein
AVM03_15660	COG1136	(ABC) transporter
AVM03_15665	COG0577	efflux transmembrane transporter activity
AVM03_15670	COG0745	RESPONSE REGULATOR receiver
AVM03_15675	COG5002	protein histidine kinase activity
AVM03_15675	COG3850	Histidine kinase
AVM03_15680	COG0457	Tetratricopeptide repeat
AVM03_15690	COG0527	aspartate kinase activity
AVM03_15695	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AVM03_15700	COG4605	iron ion homeostasis
AVM03_15705	COG4604	ABC transporter, ATP-binding protein
AVM03_15710	COG4607	ABC-type enterochelin transport system periplasmic component
AVM03_15715	COG2814	Major facilitator Superfamily
AVM03_15720	COG1309	transcriptional regulator
AVM03_15725	COG0778	Nitroreductase
AVM03_15730	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
AVM03_15735	COG0640	Transcriptional regulator
AVM03_15740	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AVM03_15745	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
AVM03_15750	COG1012	belongs to the aldehyde dehydrogenase family
AVM03_15755	COG4975	Glucose uptake
AVM03_15760	COG1028	Short-chain dehydrogenase reductase Sdr
AVM03_15765	COG4549	nuclear export factor GLE1
AVM03_15770	COG1276	copper resistance
AVM03_15770	COG2372	response to copper ion
AVM03_15775	COG1349	DNA-binding transcription factor activity
AVM03_15785	COG2213	PTS system mannitol-specific
AVM03_15790	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
AVM03_15800	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
AVM03_15805	COG0561	phosphatase activity
AVM03_15815	COG1914	H( )-stimulated, divalent metal cation uptake system
AVM03_15825	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
AVM03_15830	COG1984	allophanate hydrolase subunit 2
AVM03_15835	COG1414	Transcriptional regulator
AVM03_15840	COG2755	lipolytic protein G-D-S-L family
AVM03_15850	COG2329	Antibiotic biosynthesis monooxygenase
AVM03_15855	COG0768	penicillin binding
AVM03_15860	COG4989	oxidoreductase activity
AVM03_15865	COG3711	transcriptional antiterminator
AVM03_15870	COG0318	PFAM AMP-dependent synthetase and ligase
AVM03_15875	COG1028	Short-chain dehydrogenase reductase Sdr
AVM03_15880	COG1917	Cupin 2, conserved barrel domain protein
AVM03_15885	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AVM03_15890	COG3871	stress protein (general stress protein 26)
AVM03_15900	COG2814	Major facilitator Superfamily
AVM03_15905	COG1522	sequence-specific DNA binding
AVM03_15910	COG0551	DNA topoisomerase type I activity
AVM03_15910	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
AVM03_15915	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
AVM03_15920	COG3706	GGDEF domain
AVM03_15925	COG5298	Protein conserved in bacteria
AVM03_15930	COG1215	transferase activity, transferring glycosyl groups
AVM03_15940	COG0531	amino acid
AVM03_15945	COG0494	nUDIX hydrolase
AVM03_15950	COG0028	Belongs to the TPP enzyme family
AVM03_15995	COG0457	Tetratricopeptide repeat
AVM03_16025	COG1914	H( )-stimulated, divalent metal cation uptake system
AVM03_16040	COG4876	unkown
AVM03_16050	COG2076	Multidrug Resistance protein
AVM03_16055	COG2217	Heavy metal translocating P-type atpase
AVM03_16060	COG3729	General stress protein
AVM03_16065	COG0662	Cupin 2, conserved barrel domain protein
AVM03_16070	COG2329	Antibiotic biosynthesis monooxygenase
AVM03_16075	COG3546	catalase activity
AVM03_16080	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
AVM03_16085	COG3290	protein histidine kinase activity
AVM03_16090	COG4565	transcriptional regulatory protein
AVM03_16095	COG1301	dicarboxylic acid transport
AVM03_16100	COG0628	permease
AVM03_16105	COG1131	(ABC) transporter
AVM03_16110	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
AVM03_16120	COG1960	acyl-CoA dehydrogenase activity
AVM03_16130	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
AVM03_16135	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AVM03_16145	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
AVM03_16150	COG0513	Belongs to the DEAD box helicase family
AVM03_16155	COG3402	PFAM membrane-flanked domain
AVM03_16160	COG3428	Bacterial PH domain
AVM03_16165	COG0705	Rhomboid family
AVM03_16175	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
AVM03_16180	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
AVM03_16185	COG0864	Transcriptional regulator
AVM03_16190	COG2337	Toxic component of a toxin-antitoxin (TA) module
AVM03_16195	COG1366	Belongs to the anti-sigma-factor antagonist family
AVM03_16200	COG1366	Belongs to the anti-sigma-factor antagonist family
AVM03_16205	COG2172	sigma factor antagonist activity
AVM03_16210	COG2208	phosphoserine phosphatase activity
AVM03_16215	COG1366	Belongs to the anti-sigma-factor antagonist family
AVM03_16225	COG1191	sigma factor activity
AVM03_16230	COG2208	phosphoserine phosphatase activity
AVM03_16235	COG2183	response to ionizing radiation
AVM03_16280	COG2249	NAD(P)H dehydrogenase (quinone) activity
AVM03_16290	COG0477	Major facilitator Superfamily
AVM03_16300	COG1764	response to oxidative stress
AVM03_16305	COG1846	Transcriptional regulator
AVM03_16310	COG1959	2 iron, 2 sulfur cluster binding
AVM03_16315	COG2910	NAD(P)H-binding
AVM03_16320	COG1278	Cold shock
AVM03_16330	COG1937	Protein conserved in bacteria
AVM03_16335	COG2210	Belongs to the sulfur carrier protein TusA family
AVM03_16345	COG0425	Belongs to the sulfur carrier protein TusA family
AVM03_16345	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
AVM03_16350	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AVM03_16350	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
AVM03_16355	COG0425	Belongs to the sulfur carrier protein TusA family
AVM03_16360	COG0730	response to heat
AVM03_16365	COG1794	racemase activity, acting on amino acids and derivatives
AVM03_16380	COG3621	Patatin-like phospholipase
AVM03_16390	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
AVM03_16395	COG1802	Transcriptional regulator
AVM03_16400	COG0251	oxidation-reduction process
AVM03_16405	COG0814	amino acid
AVM03_16410	COG1473	amidohydrolase
AVM03_16415	COG2207	Transcriptional regulator
AVM03_16415	COG1917	Cupin 2, conserved barrel domain protein
AVM03_16425	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AVM03_16430	COG0477	Major facilitator Superfamily
AVM03_16450	COG0277	FAD linked oxidase domain protein
AVM03_16480	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AVM03_16505	COG1064	alcohol dehydrogenase
AVM03_16510	COG0789	Transcriptional regulator
AVM03_16520	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AVM03_16535	COG2814	Major facilitator Superfamily
AVM03_16540	COG1309	transcriptional regulator
AVM03_16545	COG5577	PFAM Coat F domain
AVM03_16555	COG1063	alcohol dehydrogenase
AVM03_16560	COG5577	PFAM Coat F domain
AVM03_16570	COG4585	Histidine kinase
AVM03_16575	COG2197	response regulator
AVM03_16580	COG2409	Drug exporters of the RND superfamily
AVM03_16585	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
AVM03_16595	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AVM03_16600	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
AVM03_16610	COG2814	Major facilitator Superfamily
AVM03_16615	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
AVM03_16625	COG0730	response to heat
AVM03_16630	COG0456	acetyltransferase
AVM03_16635	COG4978	Transcriptional regulator
AVM03_16635	COG0789	Transcriptional regulator
AVM03_16640	COG0697	spore germination
AVM03_16645	COG1051	belongs to the nudix hydrolase family
AVM03_16650	COG2226	methyltransferase
AVM03_16655	COG0473	3-isopropylmalate dehydrogenase activity
AVM03_16660	COG1802	Transcriptional regulator
AVM03_16665	COG1819	glycosyl
AVM03_16680	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
AVM03_16685	COG1388	LysM domain
AVM03_16690	COG2814	Major facilitator Superfamily
AVM03_16695	COG2188	Transcriptional regulator
AVM03_16700	COG2186	Transcriptional regulator
AVM03_16705	COG2807	transmembrane transport
AVM03_16710	COG2076	Multidrug Resistance protein
AVM03_16715	COG2076	Multidrug Resistance protein
AVM03_16720	COG1309	transcriptional regulator
AVM03_16725	COG0531	amino acid
AVM03_16735	COG3832	glyoxalase III activity
AVM03_16740	COG0604	alcohol dehydrogenase
AVM03_16745	COG2814	Major facilitator Superfamily
AVM03_16785	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
AVM03_16790	COG0802	atpase or kinase
AVM03_16795	COG1214	PFAM Peptidase M22, glycoprotease
AVM03_16800	COG0456	acetyltransferase
AVM03_16805	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
AVM03_16810	COG0488	(ABC) transporter
AVM03_16825	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
AVM03_16830	COG0805	protein transport
AVM03_16840	COG1266	CAAX protease self-immunity
AVM03_16845	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
AVM03_16865	COG0457	Tetratricopeptide repeat
AVM03_16870	COG1063	alcohol dehydrogenase
AVM03_16875	COG2211	Major facilitator Superfamily
AVM03_16880	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AVM03_16890	COG1842	Phage shock protein A
AVM03_16895	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
AVM03_16900	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
AVM03_16905	COG4260	virion core protein, lumpy skin disease virus
AVM03_16910	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
AVM03_16910	COG2755	lipolytic protein G-D-S-L family
AVM03_16920	COG1595	DNA-templated transcription, initiation
AVM03_16925	COG1063	alcohol dehydrogenase
AVM03_16930	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
AVM03_16935	COG0823	Involved in the tonB-independent uptake of proteins
AVM03_16945	COG2132	Multicopper oxidase
AVM03_16950	COG1113	amino acid transport
AVM03_16955	COG0714	Associated with various cellular activities
AVM03_16960	COG1721	protein (some members contain a von Willebrand factor type A (vWA) domain
AVM03_16965	COG1305	Transglutaminase-like
AVM03_16985	COG2252	PERMEase
AVM03_16990	COG3064	Membrane
AVM03_17010	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
AVM03_17015	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
AVM03_17020	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
AVM03_17025	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
AVM03_17030	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
AVM03_17045	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
AVM03_17055	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
AVM03_17060	COG0138	bifunctional purine biosynthesis protein purh
AVM03_17065	COG0151	Belongs to the GarS family
AVM03_17075	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
AVM03_17080	COG1470	cell adhesion involved in biofilm formation
AVM03_17085	COG4496	protein, YerC YecD
AVM03_17090	COG0069	glutamate synthase activity
AVM03_17105	COG0210	DNA helicase
AVM03_17115	COG4851	CamS sex pheromone cAM373 precursor
AVM03_17120	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
AVM03_17125	COG1285	pathogenesis
AVM03_17130	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AVM03_17150	COG1309	transcriptional regulator
AVM03_17155	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AVM03_17160	COG1597	lipid kinase activity
AVM03_17165	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
AVM03_17170	COG2197	response regulator
AVM03_17180	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AVM03_17190	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
AVM03_17200	COG1028	Short-chain dehydrogenase reductase Sdr
AVM03_17205	COG1131	(ABC) transporter
AVM03_17225	COG5444	nuclease activity
AVM03_17255	COG3546	catalase activity
AVM03_17260	COG0454	-acetyltransferase
AVM03_17270	COG2323	membrane
AVM03_17275	COG2329	Antibiotic biosynthesis monooxygenase
AVM03_17280	COG0346	lactoylglutathione lyase activity
AVM03_17285	COG1366	Belongs to the anti-sigma-factor antagonist family
AVM03_17290	COG0196	riboflavin kinase activity
AVM03_17295	COG0670	Belongs to the BI1 family
AVM03_17300	COG1846	Transcriptional regulator
AVM03_17305	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AVM03_17315	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
AVM03_17315	COG2124	cytochrome p450
AVM03_17330	COG1131	(ABC) transporter
AVM03_17350	COG1368	sulfuric ester hydrolase activity
AVM03_17355	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
AVM03_17360	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AVM03_17365	COG1442	glycosyl transferase family 8
AVM03_17370	COG1216	Glycosyl transferase, family 2
AVM03_17375	COG1442	glycosyl transferase family 8
AVM03_17380	COG2223	nitrite transmembrane transporter activity
AVM03_17385	COG0531	amino acid
AVM03_17390	COG1012	belongs to the aldehyde dehydrogenase family
AVM03_17395	COG0840	transmembrane signaling receptor activity
AVM03_17400	COG1028	Short-chain dehydrogenase reductase Sdr
AVM03_17405	COG0463	Glycosyl transferase, family 2
AVM03_17405	COG0457	Tetratricopeptide repeat
AVM03_17410	COG0488	(ABC) transporter
AVM03_17415	COG0789	Transcriptional regulator
AVM03_17420	COG2814	Major facilitator Superfamily
AVM03_17425	COG0488	(ABC) transporter
AVM03_17430	COG0513	Belongs to the DEAD box helicase family
AVM03_17440	COG2130	NADP-dependent
AVM03_17455	COG3866	Pectate lyase
AVM03_17460	COG0471	metal ion transport
AVM03_17480	COG0745	RESPONSE REGULATOR receiver
AVM03_17480	COG2972	Histidine kinase
AVM03_17485	COG3279	Response regulator of the LytR AlgR family
AVM03_17495	COG3764	Sortase (surface protein transpeptidase)
AVM03_17500	COG3290	protein histidine kinase activity
AVM03_17505	COG4565	transcriptional regulatory protein
AVM03_17510	COG3181	Tripartite tricarboxylate transporter family receptor
AVM03_17515	COG2851	Citrate transporter
AVM03_17520	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AVM03_17525	COG4362	Belongs to the NOS family. Bacterial NOS oxygenase subfamily
AVM03_17535	COG2258	MOSC domain
AVM03_17545	COG0024	Methionine aminopeptidase
AVM03_17550	COG1263	PTS System
AVM03_17550	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AVM03_17560	COG1368	sulfuric ester hydrolase activity
AVM03_17570	COG0071	Belongs to the small heat shock protein (HSP20) family
AVM03_17585	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AVM03_17585	COG1263	PTS System
AVM03_17590	COG0366	Alpha amylase catalytic
AVM03_17595	COG2188	Transcriptional regulator
AVM03_17600	COG0778	Nitroreductase
AVM03_17615	COG0737	Belongs to the 5'-nucleotidase family
AVM03_17620	COG0693	protein deglycase activity
AVM03_17625	COG1609	Transcriptional regulator
AVM03_17630	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
AVM03_17640	COG2814	Major facilitator Superfamily
AVM03_17650	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
AVM03_17655	COG4980	gas vesicle protein
AVM03_17660	COG1295	ribonuclease BN
AVM03_17665	COG0477	Major facilitator Superfamily
AVM03_17670	COG0387	Pfam Sodium calcium exchanger
AVM03_17680	COG0668	transmembrane transport
AVM03_17685	COG0535	radical SAM domain protein
AVM03_17695	COG0726	polysaccharide deacetylase
AVM03_17700	COG2084	Dehydrogenase
AVM03_17710	COG0598	Magnesium transport protein CorA
AVM03_17715	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
AVM03_17720	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
AVM03_17730	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
AVM03_17735	COG4637	Psort location Cytoplasmic, score
AVM03_17740	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
AVM03_17745	COG0022	dehydrogenase e1 component
AVM03_17750	COG0508	dehydrogenase complex catalyzes the overall conversion of
AVM03_17755	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AVM03_17760	COG3284	Transcriptional regulator
AVM03_17770	COG1486	melibiose metabolic process
AVM03_17775	COG1737	Transcriptional regulator
AVM03_17780	COG1263	PTS System
AVM03_17780	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AVM03_17785	COG1132	(ABC) transporter
AVM03_17790	COG1132	(ABC) transporter
AVM03_17795	COG2259	Doxx family
AVM03_17800	COG2514	catechol 2,3-dioxygenase activity
AVM03_17810	COG1695	Transcriptional regulator
AVM03_17815	COG2249	NAD(P)H dehydrogenase (quinone) activity
AVM03_17820	COG3936	Protein involved in polysaccharide intercellular adhesin (PIA) synthesis biofilm formation
AVM03_17825	COG3848	Pyruvate phosphate dikinase
AVM03_17825	COG0574	Belongs to the PEP-utilizing enzyme family
AVM03_17830	COG2732	(Barnase) inhibitor
AVM03_17835	COG2318	DinB family
AVM03_17840	COG2814	Major facilitator Superfamily
AVM03_17845	COG1846	Transcriptional regulator
AVM03_17850	COG0392	lysyltransferase activity
AVM03_17850	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
AVM03_17855	COG0384	phenazine biosynthesis protein PhzF
AVM03_17860	COG0778	Nitroreductase
AVM03_17870	COG1090	epimerase
AVM03_17885	COG2814	Major facilitator Superfamily
AVM03_17895	COG3591	Belongs to the peptidase S1B family
AVM03_17910	COG3103	Sh3 type 3 domain protein
AVM03_17915	COG5658	integral membrane protein
AVM03_17920	COG0596	Alpha beta hydrolase
AVM03_17925	COG0463	Glycosyl transferase, family 2
AVM03_17930	COG4485	Bacterial membrane protein, YfhO
AVM03_17935	COG1988	membrane-bound metal-dependent
AVM03_17940	COG1194	a g-specific adenine glycosylase
AVM03_17950	COG1028	Short-chain dehydrogenase reductase Sdr
AVM03_17970	COG1132	(ABC) transporter
AVM03_17975	COG4129	membrane
AVM03_17985	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
AVM03_17990	COG0735	belongs to the Fur family
AVM03_18105	COG0277	FAD linked oxidase domain protein
AVM03_18115	COG0747	negative chemotaxis
AVM03_18120	COG0601	transmembrane transport
AVM03_18125	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AVM03_18130	COG0444	Belongs to the ABC transporter superfamily
AVM03_18135	COG4608	Belongs to the ABC transporter superfamily
AVM03_18140	COG0753	catalase activity
AVM03_18150	COG1116	anion transmembrane transporter activity
AVM03_18155	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AVM03_18160	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AVM03_18180	COG1476	TRANSCRIPTIONal
AVM03_18190	COG3382	B3 4 domain protein
AVM03_18195	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
AVM03_18205	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
AVM03_18210	COG0789	Transcriptional regulator
AVM03_18215	COG1664	Polymer-forming cytoskeletal
AVM03_18220	COG1664	Polymer-forming cytoskeletal
AVM03_18225	COG2766	serine protein kinase
AVM03_18235	COG1846	Transcriptional regulator
AVM03_18240	COG1566	PFAM secretion protein HlyD family protein
AVM03_18245	COG2814	Major facilitator Superfamily
AVM03_18250	COG0655	NAD(P)H dehydrogenase (quinone) activity
AVM03_18265	COG1725	Transcriptional regulator
AVM03_18270	COG1131	(ABC) transporter
AVM03_18275	COG1131	(ABC) transporter
AVM03_18280	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
AVM03_18285	COG1278	Cold shock
AVM03_18290	COG1464	Belongs to the NlpA lipoprotein family
AVM03_18295	COG3706	GGDEF domain
AVM03_18300	COG1823	symporter activity
AVM03_18320	COG5577	PFAM Coat F domain
AVM03_18325	COG1525	nuclease
AVM03_18325	COG4085	toxin activity
AVM03_18325	COG0737	Belongs to the 5'-nucleotidase family
AVM03_18330	COG3764	Sortase (surface protein transpeptidase)
AVM03_18335	COG0564	pseudouridine synthase activity
AVM03_18345	COG0517	IMP dehydrogenase activity
AVM03_18350	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AVM03_18355	COG3153	acetyltransferase
AVM03_18355	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AVM03_18360	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
AVM03_18365	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
AVM03_18370	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
AVM03_18380	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
AVM03_18385	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AVM03_18400	COG0431	NADPH-dependent FMN reductase
AVM03_18415	COG1388	LysM domain
AVM03_18415	COG0791	NLP P60 protein
AVM03_18420	COG1959	2 iron, 2 sulfur cluster binding
AVM03_18425	COG0668	transmembrane transport
AVM03_18430	COG2719	SpoVR family
AVM03_18435	COG1785	Belongs to the alkaline phosphatase family
AVM03_18440	COG1388	LysM domain
AVM03_18440	COG0791	NLP P60 protein
AVM03_18445	COG0583	DNA-binding transcription factor activity
AVM03_18450	COG0372	Belongs to the citrate synthase family
AVM03_18455	COG1028	Short-chain dehydrogenase reductase Sdr
AVM03_18460	COG0531	amino acid
AVM03_18465	COG0733	neurotransmitter:sodium symporter activity
AVM03_18480	COG1595	DNA-templated transcription, initiation
AVM03_18485	COG0204	Acyl-transferase
AVM03_18490	COG1253	flavin adenine dinucleotide binding
AVM03_18495	COG0789	Transcriptional regulator
AVM03_18500	COG0436	Aminotransferase
AVM03_18505	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
AVM03_18510	COG1253	flavin adenine dinucleotide binding
AVM03_18515	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
AVM03_18520	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
AVM03_18525	COG0584	glycerophosphoryl diester phosphodiesterase
AVM03_18530	COG0668	transmembrane transport
AVM03_18535	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
AVM03_18540	COG0726	polysaccharide deacetylase
AVM03_18545	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
AVM03_18550	COG3226	Transcriptional regulator
AVM03_18560	COG0589	response to stress
AVM03_18565	COG1132	(ABC) transporter
AVM03_18570	COG1132	(ABC) transporter
AVM03_18575	COG0702	epimerase
AVM03_18590	COG0189	ligase activity
AVM03_18595	COG0189	ligase activity
AVM03_18610	COG4335	DNA alkylation repair
AVM03_18615	COG0561	phosphatase activity
AVM03_18620	COG0635	Involved in the biosynthesis of porphyrin-containing compound
AVM03_18630	COG0475	glutathione-regulated potassium exporter activity
AVM03_18635	COG0490	domain, Protein
AVM03_18645	COG1024	Enoyl-CoA hydratase
AVM03_18655	COG4152	abc transporter atp-binding protein
AVM03_18660	COG1668	transmembrane transport
AVM03_18665	COG0420	3'-5' exonuclease activity
AVM03_18670	COG4717	serine-type aminopeptidase activity
AVM03_18685	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AVM03_18720	COG4980	gas vesicle protein
AVM03_18735	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
AVM03_18740	COG0537	adenosine 5'-monophosphoramidase activity
AVM03_18745	COG1131	(ABC) transporter
AVM03_18750	COG4473	ABC transporter
AVM03_18760	COG1473	amidohydrolase
AVM03_18765	COG3069	C4-dicarboxylate transmembrane transporter activity
AVM03_18770	COG2329	Antibiotic biosynthesis monooxygenase
AVM03_18775	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AVM03_18795	COG1309	transcriptional regulator
AVM03_18800	COG1511	domain protein
AVM03_18805	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
AVM03_18815	COG1363	Peptidase, m42
AVM03_18820	COG1301	dicarboxylic acid transport
AVM03_18825	COG1234	tRNA 3'-trailer cleavage
AVM03_18830	COG0095	Lipoate-protein ligase
AVM03_18835	COG0702	epimerase
AVM03_18840	COG0318	PFAM AMP-dependent synthetase and ligase
AVM03_18850	COG0501	Belongs to the peptidase M48B family
AVM03_18855	COG1404	Belongs to the peptidase S8 family
AVM03_18865	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
AVM03_18870	COG0406	alpha-ribazole phosphatase activity
AVM03_18875	COG0183	Belongs to the thiolase family
AVM03_18880	COG0318	PFAM AMP-dependent synthetase and ligase
AVM03_18885	COG1268	BioY protein
AVM03_18890	COG0840	transmembrane signaling receptor activity
AVM03_18895	COG0723	plastoquinol--plastocyanin reductase activity
AVM03_18895	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AVM03_18900	COG1028	Short-chain dehydrogenase reductase Sdr
AVM03_18910	COG4903	ComK protein
AVM03_18920	COG5646	InterPro IPR014922
AVM03_18940	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AVM03_18955	COG0398	Pfam SNARE associated Golgi protein
AVM03_18960	COG0681	Belongs to the peptidase S26 family
AVM03_18965	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AVM03_18970	COG1846	Transcriptional regulator
AVM03_18975	COG3180	Ammonia monooxygenase
AVM03_18980	COG2814	Major facilitator Superfamily
AVM03_18990	COG1633	Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME)
AVM03_18995	COG2323	membrane
AVM03_19010	COG0420	3'-5' exonuclease activity
AVM03_19015	COG0419	ATPase involved in DNA repair
AVM03_19020	COG1403	HNH endonuclease
AVM03_19060	COG0179	Fumarylacetoacetate (FAA) hydrolase
AVM03_19080	COG0367	asparagine synthase
AVM03_19085	COG1562	ergosterol biosynthetic process
AVM03_19090	COG0534	Mate efflux family protein
AVM03_19095	COG1917	Cupin 2, conserved barrel domain protein
AVM03_19095	COG2207	Transcriptional regulator
AVM03_19100	COG1609	Transcriptional regulator
AVM03_19105	COG0673	inositol 2-dehydrogenase activity
AVM03_19110	COG2318	DinB family
AVM03_19115	COG1279	arginine transmembrane transporter activity
AVM03_19120	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AVM03_19125	COG1357	PFAM Pentapeptide repeats (8 copies)
AVM03_19130	COG2153	protein acetylation
AVM03_19135	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
AVM03_19135	COG0646	methionine synthase
AVM03_19145	COG2996	Protein conserved in bacteria
AVM03_19160	COG1307	EDD domain protein, DegV family
AVM03_19180	COG0561	phosphatase activity
AVM03_19190	COG2151	metal-sulfur cluster biosynthetic enzyme
AVM03_19230	COG0505	Belongs to the CarA family