locus-tag	class	description
BAMY_00010	COG0592	DNA-directed DNA polymerase activity
BAMY_00015	COG2501	S4 domain
BAMY_00030	COG0187	DNA topoisomerase II activity
BAMY_00035	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
BAMY_00070	COG0517	IMP dehydrogenase activity
BAMY_00070	COG0516	GMP reductase activity
BAMY_00075	COG1686	Belongs to the peptidase S11 family
BAMY_00095	COG1929	Belongs to the glycerate kinase type-1 family
BAMY_00105	COG1428	Deoxynucleoside kinase
BAMY_00110	COG1428	Deoxynucleoside kinase
BAMY_00115	COG1388	LysM domain
BAMY_00115	COG3858	chitin binding
BAMY_00120	COG1335	isochorismatase
BAMY_00125	COG0590	tRNA wobble adenosine to inosine editing
BAMY_00135	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
BAMY_00140	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
BAMY_00190	COG4915	5-bromo-4-chloroindolyl phosphate hydrolysis protein
BAMY_00195	COG3853	Toxic anion resistance protein (TelA)
BAMY_00200	COG1982	Orn Lys Arg decarboxylase major
BAMY_00210	COG3870	Protein conserved in bacteria
BAMY_00215	COG1728	Protein conserved in bacteria
BAMY_00220	COG0470	DNA polymerase III
BAMY_00225	COG1774	PSP1 C-terminal conserved region
BAMY_00235	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
BAMY_00245	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
BAMY_00250	COG2002	toxin-antitoxin pair type II binding
BAMY_00255	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BAMY_00255	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BAMY_00260	COG0084	hydrolase, TatD family'
BAMY_00265	COG3584	3D domain protein
BAMY_00265	COG3583	domain protein
BAMY_00270	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
BAMY_00275	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
BAMY_00285	COG4466	Protein conserved in bacteria
BAMY_00300	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
BAMY_00305	COG0251	oxidation-reduction process
BAMY_00320	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
BAMY_00340	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
BAMY_00345	COG2002	toxin-antitoxin pair type II binding
BAMY_00350	COG2244	polysaccharide biosynthetic process
BAMY_00355	COG3956	TIGRFAM MazG family protein
BAMY_00360	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
BAMY_00375	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
BAMY_00380	COG1098	S1 RNA binding domain
BAMY_00395	COG2208	phosphoserine phosphatase activity
BAMY_00400	COG2304	oxidoreductase activity
BAMY_00405	COG0515	serine threonine protein kinase
BAMY_00410	COG0037	tRNA processing
BAMY_00420	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
BAMY_00435	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BAMY_00440	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
BAMY_00445	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
BAMY_00450	COG0512	Glutamine amidotransferase of anthranilate synthase
BAMY_00455	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
BAMY_00460	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
BAMY_00465	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
BAMY_00470	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
BAMY_00475	COG1396	sequence-specific DNA binding
BAMY_00480	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
BAMY_00485	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
BAMY_00570	COG4463	regulation of RNA biosynthetic process
BAMY_00575	COG3880	PFAM UvrB UvrC protein
BAMY_00585	COG0542	response to heat
BAMY_00590	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
BAMY_00595	COG1623	Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c- di-AMP acts as a signaling molecule that couples DNA integrity with progression of sporulation. The rise in c-di-AMP level generated by DisA while scanning the chromosome, operates as a positive signal that advances sporulation
BAMY_00600	COG4956	integral membrane protein (PIN domain superfamily)
BAMY_00620	COG1045	serine acetyltransferase
BAMY_00630	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
BAMY_00635	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BAMY_00640	COG3688	RNA-binding protein containing a PIN domain
BAMY_00645	COG1595	DNA-templated transcription, initiation
BAMY_00650	COG0267	Belongs to the bacterial ribosomal protein bL33 family
BAMY_00655	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
BAMY_00660	COG0250	Participates in transcription elongation, termination and antitermination
BAMY_00665	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
BAMY_00680	COG0222	ribosome binding
BAMY_00685	COG2813	Specifically methylates the guanine in position
BAMY_00700	COG1358	cellular component organization or biogenesis
BAMY_00725	COG0596	Alpha beta hydrolase
BAMY_00730	COG0051	transcription antitermination factor activity, RNA binding
BAMY_00745	COG0089	rRNA binding
BAMY_00755	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
BAMY_00760	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
BAMY_00770	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
BAMY_00775	COG0255	Belongs to the universal ribosomal protein uL29 family
BAMY_00785	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
BAMY_00820	COG1841	ribosomal large subunit assembly
BAMY_00830	COG0201	protein transport
BAMY_00840	COG0024	Methionine aminopeptidase
BAMY_00845	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
BAMY_00850	COG0257	Belongs to the bacterial ribosomal protein bL36 family
BAMY_00875	COG1122	ATPase activity
BAMY_00880	COG1122	ATPase activity
BAMY_00885	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
BAMY_00905	COG2226	methyltransferase
BAMY_00910	COG2318	DinB family
BAMY_00920	COG0860	N-Acetylmuramoyl-L-alanine amidase
BAMY_00925	COG0489	protein tyrosine kinase activity
BAMY_00935	COG2194	sulfuric ester hydrolase activity
BAMY_00940	COG0726	polysaccharide deacetylase
BAMY_01000	COG0738	Major facilitator superfamily
BAMY_01005	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
BAMY_01020	COG0659	secondary active sulfate transmembrane transporter activity
BAMY_01025	COG0385	Bile acid
BAMY_01030	COG2819	hydrolase of the alpha beta superfamily
BAMY_01035	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BAMY_01040	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BAMY_01045	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
BAMY_01050	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
BAMY_01050	COG2207	Transcriptional regulator
BAMY_01055	COG3876	Protein conserved in bacteria
BAMY_01060	COG1472	Belongs to the glycosyl hydrolase 3 family
BAMY_01065	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
BAMY_01070	COG1263	PTS System
BAMY_01070	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BAMY_01080	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BAMY_01085	COG1683	Conserved Protein
BAMY_01115	COG1595	DNA-templated transcription, initiation
BAMY_01120	COG5662	AntiSigma factor
BAMY_01125	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
BAMY_01130	COG4856	YbbR-like protein
BAMY_01170	COG1346	cytolysis
BAMY_01175	COG1380	Effector of murein hydrolase LrgA
BAMY_01180	COG1846	Transcriptional regulator
BAMY_01185	COG1113	amino acid transport
BAMY_01190	COG1011	Hydrolase
BAMY_01195	COG4585	Histidine kinase
BAMY_01200	COG2197	response regulator
BAMY_01205	COG1131	(ABC) transporter
BAMY_01245	COG0531	amino acid
BAMY_01250	COG0584	glycerophosphoryl diester phosphodiesterase
BAMY_01255	COG2271	Major facilitator Superfamily
BAMY_01265	COG2368	4-hydroxyphenylacetate
BAMY_01275	COG3409	Peptidoglycan-binding domain 1 protein
BAMY_01290	COG0371	Dehydrogenase
BAMY_01305	COG1183	phosphatidylcholine synthase activity
BAMY_01310	COG0586	Pfam SNARE associated Golgi protein
BAMY_01315	COG0688	phosphatidylethanolamine metabolic process
BAMY_01330	COG1301	dicarboxylic acid transport
BAMY_01335	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
BAMY_01340	COG0833	amino acid
BAMY_01345	COG2040	homocysteine
BAMY_01350	COG1115	amino acid carrier protein
BAMY_01355	COG2066	Belongs to the glutaminase family
BAMY_01360	COG4191	Histidine kinase
BAMY_01365	COG0784	Response regulator, receiver
BAMY_01370	COG3173	Aminoglycoside phosphotransferase
BAMY_01380	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
BAMY_01385	COG0778	Nitroreductase
BAMY_01390	COG0346	lactoylglutathione lyase activity
BAMY_01395	COG2259	Doxx family
BAMY_01400	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BAMY_01410	COG3773	Cell wall hydrolase
BAMY_01415	COG3540	Alkaline phosphatase
BAMY_01420	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
BAMY_01425	COG0805	protein transport
BAMY_01435	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
BAMY_01440	COG0477	Major facilitator Superfamily
BAMY_01445	COG1309	transcriptional regulator
BAMY_01450	COG0252	asparaginase activity
BAMY_01455	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
BAMY_01460	COG1405	negative regulation of cell septum assembly
BAMY_01460	COG3012	SEC-C Motif Domain Protein
BAMY_01465	COG0667	Aldo Keto reductase
BAMY_01475	COG1595	DNA-templated transcription, initiation
BAMY_01480	COG1595	DNA-templated transcription, initiation
BAMY_01485	COG1876	peptidase activity
BAMY_01490	COG0457	Tetratricopeptide repeat
BAMY_01495	COG1028	Short-chain dehydrogenase reductase Sdr
BAMY_01500	COG0366	Alpha amylase catalytic
BAMY_01505	COG0803	Belongs to the bacterial solute-binding protein 9 family
BAMY_01510	COG1121	(ABC) transporter
BAMY_01515	COG1108	ABC-type Mn2 Zn2 transport systems permease components
BAMY_01520	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BAMY_01525	COG2310	stress, protein
BAMY_01530	COG2310	stress, protein
BAMY_01535	COG2310	stress, protein
BAMY_01540	COG0861	Integral membrane protein TerC family
BAMY_01550	COG3853	Toxic anion resistance protein (TelA)
BAMY_01555	COG0477	Major facilitator Superfamily
BAMY_01560	COG4175	Glycine betaine
BAMY_01560	COG0517	IMP dehydrogenase activity
BAMY_01565	COG4176	ABC-type proline glycine betaine transport system permease component
BAMY_01570	COG2113	Glycine betaine
BAMY_01575	COG1473	amidohydrolase
BAMY_01580	COG1288	antiporter activity
BAMY_01590	COG0366	Alpha amylase catalytic
BAMY_01600	COG2814	Major facilitator Superfamily
BAMY_01605	COG1846	Transcriptional regulator
BAMY_01610	COG1280	lysine exporter protein (LysE YggA)
BAMY_01615	COG3403	YqcI/YcgG family
BAMY_01620	COG1113	amino acid transport
BAMY_01625	COG3665	Urea carboxylase-associated protein
BAMY_01640	COG1660	Displays ATPase and GTPase activities
BAMY_01645	COG1082	Xylose isomerase domain protein TIM barrel
BAMY_01650	COG2271	Major facilitator Superfamily
BAMY_01655	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
BAMY_01660	COG3458	cephalosporin-C deacetylase activity
BAMY_01665	COG3541	Predicted nucleotidyltransferase
BAMY_01670	COG0506	proline dehydrogenase activity
BAMY_01675	COG1012	belongs to the aldehyde dehydrogenase family
BAMY_01680	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BAMY_01685	COG2508	Transcriptional regulator
BAMY_01695	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
BAMY_01695	COG1587	Uroporphyrinogen-III synthase
BAMY_01700	COG2146	nitrite reductase [NAD(P)H] activity
BAMY_01705	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BAMY_01710	COG0523	cobalamin synthesis protein
BAMY_01715	COG1063	alcohol dehydrogenase
BAMY_01720	COG1714	RDD family
BAMY_01730	COG2723	6-phospho-beta-galactosidase activity
BAMY_01740	COG3209	COG3209 Rhs family protein
BAMY_01745	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
BAMY_01750	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
BAMY_01755	COG1733	regulation of RNA biosynthetic process
BAMY_01760	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BAMY_01765	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BAMY_01770	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BAMY_01775	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
BAMY_01790	COG2364	Membrane
BAMY_01795	COG1126	abc transporter atp-binding protein
BAMY_01800	COG0765	amino acid transport
BAMY_01805	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BAMY_01810	COG0583	DNA-binding transcription factor activity
BAMY_01815	COG0163	prenyltransferase activity
BAMY_01820	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
BAMY_01835	COG3104	oligopeptide transport
BAMY_01840	COG5434	Belongs to the glycosyl hydrolase 28 family
BAMY_01850	COG0697	spore germination
BAMY_01860	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
BAMY_01875	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BAMY_01880	COG0765	amino acid transport
BAMY_01885	COG1126	abc transporter atp-binding protein
BAMY_01895	COG2079	MmgE PrpD family protein
BAMY_01900	COG1136	(ABC) transporter
BAMY_01905	COG0577	efflux transmembrane transporter activity
BAMY_01910	COG0745	RESPONSE REGULATOR receiver
BAMY_01915	COG5002	protein histidine kinase activity
BAMY_01915	COG3850	Histidine kinase
BAMY_01920	COG0457	Tetratricopeptide repeat
BAMY_01930	COG0527	aspartate kinase activity
BAMY_01935	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BAMY_01940	COG4605	iron ion homeostasis
BAMY_01945	COG4604	ABC transporter, ATP-binding protein
BAMY_01950	COG4607	ABC-type enterochelin transport system periplasmic component
BAMY_01955	COG2814	Major facilitator Superfamily
BAMY_01960	COG1309	transcriptional regulator
BAMY_01965	COG0778	Nitroreductase
BAMY_01970	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
BAMY_01975	COG0640	Transcriptional regulator
BAMY_01980	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BAMY_01985	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
BAMY_01990	COG1012	belongs to the aldehyde dehydrogenase family
BAMY_01995	COG4975	Glucose uptake
BAMY_02000	COG1028	Short-chain dehydrogenase reductase Sdr
BAMY_02005	COG4549	nuclear export factor GLE1
BAMY_02010	COG1276	copper resistance
BAMY_02010	COG2372	response to copper ion
BAMY_02015	COG1349	DNA-binding transcription factor activity
BAMY_02025	COG2213	PTS system mannitol-specific
BAMY_02030	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
BAMY_02040	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
BAMY_02045	COG0561	phosphatase activity
BAMY_02055	COG1914	H( )-stimulated, divalent metal cation uptake system
BAMY_02065	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
BAMY_02070	COG1984	allophanate hydrolase subunit 2
BAMY_02075	COG1414	Transcriptional regulator
BAMY_02080	COG2755	lipolytic protein G-D-S-L family
BAMY_02090	COG2329	Antibiotic biosynthesis monooxygenase
BAMY_02095	COG0768	penicillin binding
BAMY_02100	COG4989	oxidoreductase activity
BAMY_02105	COG3711	transcriptional antiterminator
BAMY_02110	COG0318	PFAM AMP-dependent synthetase and ligase
BAMY_02115	COG1028	Short-chain dehydrogenase reductase Sdr
BAMY_02120	COG1917	Cupin 2, conserved barrel domain protein
BAMY_02125	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BAMY_02130	COG3871	stress protein (general stress protein 26)
BAMY_02140	COG2814	Major facilitator Superfamily
BAMY_02145	COG1522	sequence-specific DNA binding
BAMY_02150	COG0551	DNA topoisomerase type I activity
BAMY_02150	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
BAMY_02155	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
BAMY_02160	COG3706	GGDEF domain
BAMY_02165	COG5298	Protein conserved in bacteria
BAMY_02170	COG1215	transferase activity, transferring glycosyl groups
BAMY_02180	COG0531	amino acid
BAMY_02185	COG0494	nUDIX hydrolase
BAMY_02190	COG0028	Belongs to the TPP enzyme family
BAMY_02225	COG0457	Tetratricopeptide repeat
BAMY_02230	COG0457	Tetratricopeptide repeat
BAMY_02260	COG1914	H( )-stimulated, divalent metal cation uptake system
BAMY_02270	COG4876	unkown
BAMY_02280	COG2076	Multidrug Resistance protein
BAMY_02285	COG2217	Heavy metal translocating P-type atpase
BAMY_02290	COG3729	General stress protein
BAMY_02295	COG0662	Cupin 2, conserved barrel domain protein
BAMY_02300	COG2329	Antibiotic biosynthesis monooxygenase
BAMY_02305	COG3546	catalase activity
BAMY_02310	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
BAMY_02315	COG3290	protein histidine kinase activity
BAMY_02320	COG4565	transcriptional regulatory protein
BAMY_02325	COG1301	dicarboxylic acid transport
BAMY_02330	COG0628	permease
BAMY_02335	COG1131	(ABC) transporter
BAMY_02340	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
BAMY_02350	COG1960	acyl-CoA dehydrogenase activity
BAMY_02365	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
BAMY_02370	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BAMY_02380	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
BAMY_02385	COG0513	Belongs to the DEAD box helicase family
BAMY_02390	COG3402	PFAM membrane-flanked domain
BAMY_02395	COG3428	Bacterial PH domain
BAMY_02400	COG0705	Rhomboid family
BAMY_02410	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
BAMY_02415	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
BAMY_02420	COG0864	Transcriptional regulator
BAMY_02425	COG2337	Toxic component of a toxin-antitoxin (TA) module
BAMY_02430	COG1366	Belongs to the anti-sigma-factor antagonist family
BAMY_02435	COG1366	Belongs to the anti-sigma-factor antagonist family
BAMY_02440	COG2172	sigma factor antagonist activity
BAMY_02445	COG2208	phosphoserine phosphatase activity
BAMY_02450	COG1366	Belongs to the anti-sigma-factor antagonist family
BAMY_02460	COG1191	sigma factor activity
BAMY_02465	COG2208	phosphoserine phosphatase activity
BAMY_02470	COG2183	response to ionizing radiation
BAMY_02515	COG2249	NAD(P)H dehydrogenase (quinone) activity
BAMY_02525	COG0477	Major facilitator Superfamily
BAMY_02535	COG1764	response to oxidative stress
BAMY_02540	COG1846	Transcriptional regulator
BAMY_02545	COG1959	2 iron, 2 sulfur cluster binding
BAMY_02550	COG2910	NAD(P)H-binding
BAMY_02555	COG1278	Cold shock
BAMY_02560	COG1937	Protein conserved in bacteria
BAMY_02565	COG2210	Belongs to the sulfur carrier protein TusA family
BAMY_02575	COG0425	Belongs to the sulfur carrier protein TusA family
BAMY_02575	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BAMY_02580	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BAMY_02580	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BAMY_02585	COG0425	Belongs to the sulfur carrier protein TusA family
BAMY_02590	COG0730	response to heat
BAMY_02595	COG1794	racemase activity, acting on amino acids and derivatives
BAMY_02610	COG3621	Patatin-like phospholipase
BAMY_02620	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
BAMY_02625	COG1802	Transcriptional regulator
BAMY_02630	COG0251	oxidation-reduction process
BAMY_02635	COG0814	amino acid
BAMY_02640	COG1473	amidohydrolase
BAMY_02645	COG1917	Cupin 2, conserved barrel domain protein
BAMY_02645	COG2207	Transcriptional regulator
BAMY_02655	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BAMY_02660	COG0477	Major facilitator Superfamily
BAMY_02680	COG0277	FAD linked oxidase domain protein
BAMY_02710	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BAMY_02735	COG1064	alcohol dehydrogenase
BAMY_02740	COG0789	Transcriptional regulator
BAMY_02750	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BAMY_02765	COG2814	Major facilitator Superfamily
BAMY_02770	COG1309	transcriptional regulator
BAMY_02775	COG5577	PFAM Coat F domain
BAMY_02785	COG1063	alcohol dehydrogenase
BAMY_02790	COG5577	PFAM Coat F domain
BAMY_02805	COG4585	Histidine kinase
BAMY_02810	COG2197	response regulator
BAMY_02815	COG2409	Drug exporters of the RND superfamily
BAMY_02820	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
BAMY_02830	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BAMY_02835	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BAMY_02845	COG2814	Major facilitator Superfamily
BAMY_02850	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BAMY_02860	COG0730	response to heat
BAMY_02865	COG0456	acetyltransferase
BAMY_02870	COG4978	Transcriptional regulator
BAMY_02870	COG0789	Transcriptional regulator
BAMY_02875	COG0697	spore germination
BAMY_02880	COG1051	belongs to the nudix hydrolase family
BAMY_02885	COG2226	methyltransferase
BAMY_02890	COG0473	3-isopropylmalate dehydrogenase activity
BAMY_02895	COG1802	Transcriptional regulator
BAMY_02900	COG1819	glycosyl
BAMY_02915	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
BAMY_02920	COG1388	LysM domain
BAMY_02925	COG2814	Major facilitator Superfamily
BAMY_02930	COG2188	Transcriptional regulator
BAMY_02935	COG2186	Transcriptional regulator
BAMY_02940	COG2807	transmembrane transport
BAMY_02945	COG2076	Multidrug Resistance protein
BAMY_02950	COG2076	Multidrug Resistance protein
BAMY_02955	COG1309	transcriptional regulator
BAMY_02960	COG0531	amino acid
BAMY_02970	COG3832	glyoxalase III activity
BAMY_02975	COG0604	alcohol dehydrogenase
BAMY_02980	COG2814	Major facilitator Superfamily
BAMY_03020	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
BAMY_03025	COG0802	atpase or kinase
BAMY_03030	COG1214	PFAM Peptidase M22, glycoprotease
BAMY_03035	COG0456	acetyltransferase
BAMY_03040	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
BAMY_03045	COG0488	(ABC) transporter
BAMY_03060	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
BAMY_03065	COG0805	protein transport
BAMY_03075	COG1266	CAAX protease self-immunity
BAMY_03080	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
BAMY_03100	COG0457	Tetratricopeptide repeat
BAMY_03105	COG1063	alcohol dehydrogenase
BAMY_03115	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BAMY_03125	COG1842	Phage shock protein A
BAMY_03130	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
BAMY_03135	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
BAMY_03140	COG4260	virion core protein, lumpy skin disease virus
BAMY_03145	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
BAMY_03145	COG2755	lipolytic protein G-D-S-L family
BAMY_03155	COG1595	DNA-templated transcription, initiation
BAMY_03160	COG1063	alcohol dehydrogenase
BAMY_03165	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
BAMY_03170	COG0823	Involved in the tonB-independent uptake of proteins
BAMY_03180	COG2132	Multicopper oxidase
BAMY_03185	COG1113	amino acid transport
BAMY_03190	COG0714	Associated with various cellular activities
BAMY_03195	COG1721	protein (some members contain a von Willebrand factor type A (vWA) domain
BAMY_03200	COG1305	Transglutaminase-like
BAMY_03220	COG2252	PERMEase
BAMY_03225	COG3064	Membrane
BAMY_03245	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
BAMY_03250	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
BAMY_03255	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
BAMY_03260	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
BAMY_03265	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
BAMY_03280	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
BAMY_03290	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
BAMY_03295	COG0138	bifunctional purine biosynthesis protein purh
BAMY_03300	COG0151	Belongs to the GarS family
BAMY_03310	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
BAMY_03315	COG1470	cell adhesion involved in biofilm formation
BAMY_03320	COG4496	protein, YerC YecD
BAMY_03325	COG0069	glutamate synthase activity
BAMY_03340	COG0210	DNA helicase
BAMY_03350	COG4851	CamS sex pheromone cAM373 precursor
BAMY_03355	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
BAMY_03360	COG1285	pathogenesis
BAMY_03365	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BAMY_03385	COG1309	transcriptional regulator
BAMY_03390	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BAMY_03395	COG1597	lipid kinase activity
BAMY_03400	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
BAMY_03405	COG2197	response regulator
BAMY_03415	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BAMY_03425	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BAMY_03435	COG1028	Short-chain dehydrogenase reductase Sdr
BAMY_03440	COG1131	(ABC) transporter
BAMY_03460	COG5444	nuclease activity
BAMY_03490	COG3546	catalase activity
BAMY_03495	COG0454	-acetyltransferase
BAMY_03505	COG2323	membrane
BAMY_03510	COG2329	Antibiotic biosynthesis monooxygenase
BAMY_03515	COG0346	lactoylglutathione lyase activity
BAMY_03520	COG1366	Belongs to the anti-sigma-factor antagonist family
BAMY_03525	COG5583	Uncharacterized small protein (DUF2292)
BAMY_03530	COG0196	riboflavin kinase activity
BAMY_03535	COG0670	Belongs to the BI1 family
BAMY_03540	COG1846	Transcriptional regulator
BAMY_03545	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BAMY_03555	COG2124	cytochrome p450
BAMY_03555	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
BAMY_03570	COG1131	(ABC) transporter
BAMY_03610	COG4106	trans-aconitate 2-methyltransferase activity
BAMY_03620	COG1368	sulfuric ester hydrolase activity
BAMY_03625	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
BAMY_03630	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BAMY_03635	COG1442	glycosyl transferase family 8
BAMY_03640	COG1216	Glycosyl transferase, family 2
BAMY_03645	COG1442	glycosyl transferase family 8
BAMY_03650	COG2223	nitrite transmembrane transporter activity
BAMY_03655	COG0531	amino acid
BAMY_03660	COG1012	belongs to the aldehyde dehydrogenase family
BAMY_03665	COG0840	transmembrane signaling receptor activity
BAMY_03670	COG1028	Short-chain dehydrogenase reductase Sdr
BAMY_03675	COG0463	Glycosyl transferase, family 2
BAMY_03675	COG0457	Tetratricopeptide repeat
BAMY_03680	COG0488	(ABC) transporter
BAMY_03685	COG0789	Transcriptional regulator
BAMY_03690	COG2814	Major facilitator Superfamily
BAMY_03695	COG0488	(ABC) transporter
BAMY_03700	COG0513	Belongs to the DEAD box helicase family
BAMY_03710	COG2130	NADP-dependent
BAMY_03725	COG3866	Pectate lyase
BAMY_03730	COG0471	metal ion transport
BAMY_03745	COG3290	protein histidine kinase activity
BAMY_03750	COG4565	transcriptional regulatory protein
BAMY_03755	COG3181	Tripartite tricarboxylate transporter family receptor
BAMY_03760	COG2851	Citrate transporter
BAMY_03765	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BAMY_03770	COG4362	Belongs to the NOS family. Bacterial NOS oxygenase subfamily
BAMY_03780	COG2258	MOSC domain
BAMY_03795	COG0024	Methionine aminopeptidase
BAMY_03800	COG1263	PTS System
BAMY_03800	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BAMY_03810	COG1368	sulfuric ester hydrolase activity
BAMY_03820	COG0071	Belongs to the small heat shock protein (HSP20) family
BAMY_03835	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BAMY_03835	COG1263	PTS System
BAMY_03840	COG0366	Alpha amylase catalytic
BAMY_03845	COG2188	Transcriptional regulator
BAMY_03850	COG0778	Nitroreductase
BAMY_03865	COG0737	Belongs to the 5'-nucleotidase family
BAMY_03870	COG0693	protein deglycase activity
BAMY_03875	COG1609	Transcriptional regulator
BAMY_03880	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
BAMY_03890	COG2814	Major facilitator Superfamily
BAMY_03900	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
BAMY_03905	COG4980	gas vesicle protein
BAMY_03910	COG1295	ribonuclease BN
BAMY_03915	COG0477	Major facilitator Superfamily
BAMY_03920	COG0387	Pfam Sodium calcium exchanger
BAMY_03930	COG0668	transmembrane transport
BAMY_03935	COG0535	radical SAM domain protein
BAMY_03945	COG0726	polysaccharide deacetylase
BAMY_03950	COG2084	Dehydrogenase
BAMY_03960	COG0598	Magnesium transport protein CorA
BAMY_03965	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
BAMY_03970	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
BAMY_03980	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
BAMY_03985	COG4637	Psort location Cytoplasmic, score
BAMY_03990	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
BAMY_03995	COG0022	dehydrogenase e1 component
BAMY_04000	COG0508	dehydrogenase complex catalyzes the overall conversion of
BAMY_04005	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BAMY_04010	COG3284	Transcriptional regulator
BAMY_04020	COG1486	melibiose metabolic process
BAMY_04025	COG1737	Transcriptional regulator
BAMY_04030	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BAMY_04030	COG1263	PTS System
BAMY_04035	COG1132	(ABC) transporter
BAMY_04040	COG1132	(ABC) transporter
BAMY_04045	COG2259	Doxx family
BAMY_04050	COG2514	catechol 2,3-dioxygenase activity
BAMY_04060	COG1695	Transcriptional regulator
BAMY_04065	COG2249	NAD(P)H dehydrogenase (quinone) activity
BAMY_04070	COG3936	Protein involved in polysaccharide intercellular adhesin (PIA) synthesis biofilm formation
BAMY_04075	COG3848	Pyruvate phosphate dikinase
BAMY_04075	COG0574	Belongs to the PEP-utilizing enzyme family
BAMY_04080	COG2732	(Barnase) inhibitor
BAMY_04085	COG2318	DinB family
BAMY_04090	COG2814	Major facilitator Superfamily
BAMY_04095	COG1846	Transcriptional regulator
BAMY_04100	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
BAMY_04100	COG0392	lysyltransferase activity
BAMY_04105	COG0384	phenazine biosynthesis protein PhzF
BAMY_04110	COG0778	Nitroreductase
BAMY_04125	COG1090	epimerase
BAMY_04140	COG2814	Major facilitator Superfamily
BAMY_04150	COG3591	Belongs to the peptidase S1B family
BAMY_04165	COG3103	Sh3 type 3 domain protein
BAMY_04170	COG5658	integral membrane protein
BAMY_04175	COG0596	Alpha beta hydrolase
BAMY_04180	COG0463	Glycosyl transferase, family 2
BAMY_04185	COG4485	Bacterial membrane protein, YfhO
BAMY_04190	COG1988	membrane-bound metal-dependent
BAMY_04195	COG1194	a g-specific adenine glycosylase
BAMY_04205	COG1028	Short-chain dehydrogenase reductase Sdr
BAMY_04225	COG1132	(ABC) transporter
BAMY_04230	COG4129	membrane
BAMY_04240	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
BAMY_04245	COG0735	belongs to the Fur family
BAMY_04360	COG3340	Belongs to the peptidase S51 family
BAMY_04370	COG0277	FAD linked oxidase domain protein
BAMY_04380	COG0747	negative chemotaxis
BAMY_04385	COG0601	transmembrane transport
BAMY_04390	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BAMY_04395	COG0444	Belongs to the ABC transporter superfamily
BAMY_04400	COG4608	Belongs to the ABC transporter superfamily
BAMY_04405	COG0753	catalase activity
BAMY_04415	COG1116	anion transmembrane transporter activity
BAMY_04420	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
BAMY_04425	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BAMY_04445	COG1476	TRANSCRIPTIONal
BAMY_04455	COG3382	B3 4 domain protein
BAMY_04460	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
BAMY_04470	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
BAMY_04475	COG0789	Transcriptional regulator
BAMY_04480	COG1664	Polymer-forming cytoskeletal
BAMY_04485	COG1664	Polymer-forming cytoskeletal
BAMY_04490	COG2766	serine protein kinase
BAMY_04500	COG1846	Transcriptional regulator
BAMY_04505	COG1566	PFAM secretion protein HlyD family protein
BAMY_04510	COG2814	Major facilitator Superfamily
BAMY_04515	COG0655	NAD(P)H dehydrogenase (quinone) activity
BAMY_04530	COG1725	Transcriptional regulator
BAMY_04535	COG1131	(ABC) transporter
BAMY_04540	COG1131	(ABC) transporter
BAMY_04545	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
BAMY_04550	COG1278	Cold shock
BAMY_04555	COG1464	Belongs to the NlpA lipoprotein family
BAMY_04560	COG3706	GGDEF domain
BAMY_04565	COG1823	symporter activity
BAMY_04585	COG5577	PFAM Coat F domain
BAMY_04590	COG4085	toxin activity
BAMY_04590	COG1525	nuclease
BAMY_04590	COG0737	Belongs to the 5'-nucleotidase family
BAMY_04595	COG3764	Sortase (surface protein transpeptidase)
BAMY_04600	COG0564	pseudouridine synthase activity
BAMY_04610	COG0517	IMP dehydrogenase activity
BAMY_04615	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BAMY_04620	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BAMY_04620	COG3153	acetyltransferase
BAMY_04625	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
BAMY_04630	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
BAMY_04635	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
BAMY_04645	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
BAMY_04650	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BAMY_04665	COG0431	NADPH-dependent FMN reductase
BAMY_04680	COG0791	NLP P60 protein
BAMY_04680	COG1388	LysM domain
BAMY_04685	COG1959	2 iron, 2 sulfur cluster binding
BAMY_04690	COG0668	transmembrane transport
BAMY_04695	COG2719	SpoVR family
BAMY_04700	COG1785	Belongs to the alkaline phosphatase family
BAMY_04705	COG1388	LysM domain
BAMY_04705	COG0791	NLP P60 protein
BAMY_04710	COG0583	DNA-binding transcription factor activity
BAMY_04715	COG0372	Belongs to the citrate synthase family
BAMY_04720	COG1028	Short-chain dehydrogenase reductase Sdr
BAMY_04725	COG0531	amino acid
BAMY_04730	COG0733	neurotransmitter:sodium symporter activity
BAMY_04745	COG1595	DNA-templated transcription, initiation
BAMY_04750	COG0204	Acyl-transferase
BAMY_04755	COG1253	flavin adenine dinucleotide binding
BAMY_04760	COG0789	Transcriptional regulator
BAMY_04765	COG0436	Aminotransferase
BAMY_04770	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BAMY_04775	COG1253	flavin adenine dinucleotide binding
BAMY_04780	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
BAMY_04785	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
BAMY_04790	COG0584	glycerophosphoryl diester phosphodiesterase
BAMY_04795	COG0668	transmembrane transport
BAMY_04800	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
BAMY_04805	COG0726	polysaccharide deacetylase
BAMY_04810	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
BAMY_04815	COG3226	Transcriptional regulator
BAMY_04825	COG0589	response to stress
BAMY_04830	COG1132	(ABC) transporter
BAMY_04835	COG1132	(ABC) transporter
BAMY_04840	COG0702	epimerase
BAMY_04855	COG0189	ligase activity
BAMY_04860	COG0189	ligase activity
BAMY_04875	COG4335	DNA alkylation repair
BAMY_04880	COG0561	phosphatase activity
BAMY_04885	COG0635	Involved in the biosynthesis of porphyrin-containing compound
BAMY_04895	COG0475	glutathione-regulated potassium exporter activity
BAMY_04900	COG0490	domain, Protein
BAMY_04910	COG1024	Enoyl-CoA hydratase
BAMY_04920	COG4152	abc transporter atp-binding protein
BAMY_04925	COG1668	transmembrane transport
BAMY_04930	COG0420	3'-5' exonuclease activity
BAMY_04935	COG4717	serine-type aminopeptidase activity
BAMY_04950	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BAMY_04980	COG4980	gas vesicle protein
BAMY_04995	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
BAMY_05000	COG0537	adenosine 5'-monophosphoramidase activity
BAMY_05005	COG1131	(ABC) transporter
BAMY_05010	COG4473	ABC transporter
BAMY_05020	COG1473	amidohydrolase
BAMY_05025	COG3069	C4-dicarboxylate transmembrane transporter activity
BAMY_05030	COG2329	Antibiotic biosynthesis monooxygenase
BAMY_05035	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BAMY_05055	COG1309	transcriptional regulator
BAMY_05060	COG1511	domain protein
BAMY_05065	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BAMY_05075	COG1363	Peptidase, m42
BAMY_05080	COG1301	dicarboxylic acid transport
BAMY_05090	COG1234	tRNA 3'-trailer cleavage
BAMY_05095	COG0095	Lipoate-protein ligase
BAMY_05100	COG0702	epimerase
BAMY_05105	COG0318	PFAM AMP-dependent synthetase and ligase
BAMY_05115	COG0501	Belongs to the peptidase M48B family
BAMY_05120	COG1404	Belongs to the peptidase S8 family
BAMY_05130	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
BAMY_05135	COG0406	alpha-ribazole phosphatase activity
BAMY_05140	COG0183	Belongs to the thiolase family
BAMY_05145	COG0318	PFAM AMP-dependent synthetase and ligase
BAMY_05150	COG1268	BioY protein
BAMY_05155	COG0840	transmembrane signaling receptor activity
BAMY_05160	COG0723	plastoquinol--plastocyanin reductase activity
BAMY_05160	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BAMY_05165	COG1028	Short-chain dehydrogenase reductase Sdr
BAMY_05175	COG4903	ComK protein
BAMY_05185	COG5646	InterPro IPR014922
BAMY_05205	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BAMY_05220	COG0398	Pfam SNARE associated Golgi protein
BAMY_05225	COG0681	Belongs to the peptidase S26 family
BAMY_05230	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BAMY_05235	COG1846	Transcriptional regulator
BAMY_05240	COG3180	Ammonia monooxygenase
BAMY_05245	COG2814	Major facilitator Superfamily
BAMY_05255	COG1633	Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME)
BAMY_05260	COG2323	membrane
BAMY_05275	COG0420	3'-5' exonuclease activity
BAMY_05280	COG0419	ATPase involved in DNA repair
BAMY_05285	COG1403	HNH endonuclease
BAMY_05325	COG0179	Fumarylacetoacetate (FAA) hydrolase
BAMY_05345	COG0367	asparagine synthase
BAMY_05350	COG1562	ergosterol biosynthetic process
BAMY_05355	COG0534	Mate efflux family protein
BAMY_05360	COG1917	Cupin 2, conserved barrel domain protein
BAMY_05360	COG2207	Transcriptional regulator
BAMY_05365	COG1609	Transcriptional regulator
BAMY_05370	COG0673	inositol 2-dehydrogenase activity
BAMY_05375	COG2318	DinB family
BAMY_05380	COG1357	PFAM Pentapeptide repeats (8 copies)
BAMY_05385	COG2153	protein acetylation
BAMY_05390	COG0646	methionine synthase
BAMY_05390	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
BAMY_05400	COG2996	Protein conserved in bacteria
BAMY_05410	COG0840	transmembrane signaling receptor activity
BAMY_05415	COG1307	EDD domain protein, DegV family
BAMY_05420	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BAMY_05435	COG0561	phosphatase activity
BAMY_05440	COG1073	alpha beta
BAMY_05445	COG2151	metal-sulfur cluster biosynthetic enzyme
BAMY_05455	COG0277	FAD linked oxidase domain protein
BAMY_05460	COG2271	Major facilitator Superfamily
BAMY_05480	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
BAMY_05485	COG0505	Belongs to the CarA family
BAMY_05490	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
BAMY_05495	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
BAMY_05515	COG2267	carboxylic ester hydrolase activity
BAMY_05525	COG1744	ABC transporter substrate-binding protein PnrA-like
BAMY_05540	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BAMY_05545	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BAMY_05550	COG5504	Zn-dependent protease
BAMY_05555	COG0444	Belongs to the ABC transporter superfamily
BAMY_05560	COG4608	Belongs to the ABC transporter superfamily
BAMY_05570	COG0601	transmembrane transport
BAMY_05575	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BAMY_05585	COG0180	Tryptophanyl-tRNA synthetase
BAMY_05590	COG4166	transmembrane transport
BAMY_05595	COG0601	transmembrane transport
BAMY_05600	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BAMY_05605	COG0444	Belongs to the ABC transporter superfamily
BAMY_05610	COG4608	Belongs to the ABC transporter superfamily
BAMY_05620	COG0456	acetyltransferase
BAMY_05625	COG1393	Belongs to the ArsC family
BAMY_05630	COG0861	Integral membrane protein TerC family
BAMY_05635	COG4862	establishment of competence for transformation
BAMY_05640	COG4469	Competence protein
BAMY_05645	COG1164	Oligoendopeptidase f
BAMY_05655	COG2346	COG2346, Truncated hemoglobins
BAMY_05660	COG0741	lytic transglycosylase activity
BAMY_05665	COG4116	CYTH
BAMY_05675	COG2357	RelA SpoT domain protein
BAMY_05680	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
BAMY_05685	COG0564	pseudouridine synthase activity
BAMY_05695	COG0569	domain protein
BAMY_05695	COG0475	glutathione-regulated potassium exporter activity
BAMY_05700	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
BAMY_05705	COG0352	thiamine-phosphate diphosphorylase activity
BAMY_05710	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BAMY_05715	COG2104	thiamine diphosphate biosynthetic process
BAMY_05725	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
BAMY_05730	COG0351	phosphomethylpyrimidine kinase
BAMY_05735	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
BAMY_05790	COG0210	DNA helicase
BAMY_05810	COG1131	(ABC) transporter
BAMY_05820	COG2153	protein acetylation
BAMY_05830	COG2382	esterase
BAMY_05835	COG0626	cystathionine gamma-synthase activity
BAMY_05840	COG0626	cystathionine gamma-synthase activity
BAMY_05885	COG0346	lactoylglutathione lyase activity
BAMY_05890	COG2367	Beta-lactamase
BAMY_05895	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
BAMY_05905	COG1846	Transcriptional regulator
BAMY_05915	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
BAMY_05920	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
BAMY_05925	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
BAMY_05930	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BAMY_05930	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BAMY_05935	COG1447	Phosphotransferase system cellobiose-specific component IIA
BAMY_05945	COG1349	DNA-binding transcription factor activity
BAMY_05965	COG1285	pathogenesis
BAMY_05975	COG2205	protein histidine kinase activity
BAMY_05985	COG3383	formate dehydrogenase (NAD+) activity
BAMY_05990	COG2427	Protein of unknown function (DUF1641)
BAMY_05995	COG2124	cytochrome p450
BAMY_06000	COG1819	glycosyl
BAMY_06010	COG1587	Uroporphyrinogen-III synthase
BAMY_06015	COG0390	transport system, permease component
BAMY_06020	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
BAMY_06025	COG0697	spore germination
BAMY_06030	COG4297	protein containing double-stranded beta helix domain
BAMY_06040	COG1252	NADH dehydrogenase
BAMY_06050	COG2211	Major facilitator Superfamily
BAMY_06055	COG1609	Transcriptional regulator
BAMY_06060	COG0246	Mannitol dehydrogenase
BAMY_06065	COG2721	sulfolactate sulfo-lyase activity
BAMY_06070	COG0745	RESPONSE REGULATOR receiver
BAMY_06075	COG2770	Histidine kinase
BAMY_06075	COG2205	protein histidine kinase activity
BAMY_06080	COG1121	(ABC) transporter
BAMY_06090	COG0730	response to heat
BAMY_06095	COG2318	DinB family
BAMY_06100	COG0457	Tetratricopeptide repeat
BAMY_06105	COG5632	N-Acetylmuramoyl-L-alanine amidase
BAMY_06105	COG3409	Peptidoglycan-binding domain 1 protein
BAMY_06105	COG1388	LysM domain
BAMY_06115	COG4195	phage-related replication protein
BAMY_06120	COG2856	Zn peptidase
BAMY_06125	COG1396	sequence-specific DNA binding
BAMY_06135	COG1522	sequence-specific DNA binding
BAMY_06140	COG1484	DNA-dependent DNA replication
BAMY_06155	COG1595	DNA-templated transcription, initiation
BAMY_06160	COG5484	DNA packaging
BAMY_06160	COG3728	DNA packaging
BAMY_06165	COG1783	phage Terminase large subunit
BAMY_06170	COG5518	Phage portal protein
BAMY_06175	COG0338	D12 class N6 adenine-specific DNA methyltransferase
BAMY_06180	COG4653	Phage capsid family
BAMY_06225	COG3953	SLT domain
BAMY_06225	COG5412	phage tail tape measure protein
BAMY_06225	COG3953	SLT domain
BAMY_06225	COG5412	phage tail tape measure protein
BAMY_06225	COG3953	SLT domain
BAMY_06225	COG5412	phage tail tape measure protein
BAMY_06230	COG1652	LysM domain
BAMY_06235	COG4193	domain, Protein
BAMY_06245	COG3628	GPW Gp25 family protein
BAMY_06250	COG3299	homolog of phage Mu protein gp47
BAMY_06255	COG3778	Protein conserved in bacteria
BAMY_06295	COG5632	N-Acetylmuramoyl-L-alanine amidase
BAMY_06295	COG3409	Peptidoglycan-binding domain 1 protein
BAMY_06310	COG0306	phosphate transporter
BAMY_06315	COG1392	Phosphate transport regulator
BAMY_06320	COG0531	amino acid
BAMY_06325	COG0346	lactoylglutathione lyase activity
BAMY_06330	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
BAMY_06335	COG0463	Glycosyl transferase, family 2
BAMY_06340	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BAMY_06345	COG0477	Major facilitator Superfamily
BAMY_06350	COG2362	D-Aminopeptidase
BAMY_06355	COG0601	transmembrane transport
BAMY_06360	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BAMY_06365	COG0444	Belongs to the ABC transporter superfamily
BAMY_06370	COG4166	transmembrane transport
BAMY_06375	COG1619	proteins homologs of microcin C7 resistance protein MccF
BAMY_06380	COG4948	Mandelate Racemase Muconate Lactonizing
BAMY_06385	COG0791	NLP P60 protein
BAMY_06390	COG4608	Belongs to the ABC transporter superfamily
BAMY_06395	COG2706	6-phosphogluconolactonase activity
BAMY_06400	COG1834	amidinotransferase
BAMY_06405	COG1607	acyl-coa hydrolase
BAMY_06410	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BAMY_06415	COG2076	Multidrug Resistance protein
BAMY_06420	COG2076	Multidrug Resistance protein
BAMY_06425	COG0788	formyltetrahydrofolate deformylase activity
BAMY_06430	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
BAMY_06440	COG1764	response to oxidative stress
BAMY_06445	COG1846	Transcriptional regulator
BAMY_06450	COG1764	response to oxidative stress
BAMY_06465	COG0463	Glycosyl transferase, family 2
BAMY_06465	COG0457	Tetratricopeptide repeat
BAMY_06475	COG2814	Major facilitator Superfamily
BAMY_06480	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BAMY_06490	COG1404	Belongs to the peptidase S8 family
BAMY_06495	COG1366	Belongs to the anti-sigma-factor antagonist family
BAMY_06500	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
BAMY_06505	COG1122	ATPase activity
BAMY_06510	COG4721	ABC-type cobalt transport system, permease component
BAMY_06515	COG3858	chitin binding
BAMY_06515	COG1388	LysM domain
BAMY_06520	COG2239	Acts as a magnesium transporter
BAMY_06525	COG0789	Transcriptional regulator
BAMY_06535	COG1846	Transcriptional regulator
BAMY_06540	COG0726	polysaccharide deacetylase
BAMY_06545	COG3285	dna ligase
BAMY_06545	COG1793	dna ligase
BAMY_06550	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
BAMY_06560	COG0586	Pfam SNARE associated Golgi protein
BAMY_06565	COG0861	Integral membrane protein TerC family
BAMY_06570	COG1191	sigma factor activity
BAMY_06595	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
BAMY_06600	COG2323	membrane
BAMY_06605	COG3594	Acyltransferase
BAMY_06610	COG5002	protein histidine kinase activity
BAMY_06615	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
BAMY_06630	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BAMY_06635	COG0436	Aminotransferase
BAMY_06665	COG3852	Histidine kinase
BAMY_06670	COG1846	Transcriptional regulator
BAMY_06675	COG1360	Flagellar Motor Protein
BAMY_06680	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
BAMY_06685	COG0542	response to heat
BAMY_06690	COG3949	Membrane
BAMY_06705	COG0720	synthase
BAMY_06710	COG0602	queuosine metabolic process
BAMY_06725	COG4873	Protein conserved in bacteria
BAMY_06735	COG3773	Cell wall hydrolase
BAMY_06740	COG2244	polysaccharide biosynthetic process
BAMY_06745	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BAMY_06750	COG2217	Heavy metal translocating P-type atpase
BAMY_06755	COG0006	proline dipeptidase activity
BAMY_06760	COG1609	Transcriptional regulator
BAMY_06765	COG3711	transcriptional antiterminator
BAMY_06770	COG2190	(PTS) system
BAMY_06770	COG1263	PTS System
BAMY_06770	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BAMY_06775	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
BAMY_06780	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
BAMY_06790	COG1533	DNA photolyase activity
BAMY_06795	COG0840	transmembrane signaling receptor activity
BAMY_06800	COG2084	Dehydrogenase
BAMY_06805	COG2340	Cysteine-rich secretory protein family
BAMY_06810	COG0768	penicillin binding
BAMY_06815	COG4191	Histidine kinase
BAMY_06820	COG0436	Aminotransferase
BAMY_06825	COG0784	Response regulator, receiver
BAMY_06825	COG0835	chemotaxis
BAMY_06835	COG2814	Major facilitator Superfamily
BAMY_06840	COG1376	ErfK ybiS ycfS ynhG family protein
BAMY_06845	COG1408	metallophosphoesterase
BAMY_06850	COG1028	Short-chain dehydrogenase reductase Sdr
BAMY_06860	COG2200	EAL domain
BAMY_06865	COG4703	Protein of unknown function (DUF1797)
BAMY_06870	COG1978	Selenoprotein B, glycine betaine sarcosine D-proline reductase family
BAMY_06880	COG0517	IMP dehydrogenase activity
BAMY_06885	COG0583	DNA-binding transcription factor activity
BAMY_06890	COG0716	FMN binding
BAMY_06900	COG0716	FMN binding
BAMY_06920	COG0668	transmembrane transport
BAMY_06925	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BAMY_06945	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
BAMY_06950	COG0303	'Molybdopterin
BAMY_06955	COG1763	Mo-molybdopterin cofactor biosynthetic process
BAMY_06960	COG0314	molybdopterin synthase activity
BAMY_06965	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
BAMY_06975	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BAMY_06980	COG1136	(ABC) transporter
BAMY_06985	COG0577	efflux transmembrane transporter activity
BAMY_06990	COG1349	DNA-binding transcription factor activity
BAMY_06995	COG1105	Belongs to the carbohydrate kinase PfkB family
BAMY_07000	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BAMY_07000	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BAMY_07000	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BAMY_07005	COG0681	Belongs to the peptidase S26 family
BAMY_07015	COG0488	(ABC) transporter
BAMY_07020	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
BAMY_07025	COG2309	aminopeptidase activity
BAMY_07030	COG1077	Cell shape determining protein MreB Mrl
BAMY_07040	COG2002	toxin-antitoxin pair type II binding
BAMY_07045	COG3852	Histidine kinase
BAMY_07050	COG2105	PFAM AIG2 family protein
BAMY_07050	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
BAMY_07055	COG0569	domain protein
BAMY_07065	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
BAMY_07075	COG0561	phosphatase activity
BAMY_07080	COG0242	peptide deformylase activity
BAMY_07090	COG0497	DNA recombination
BAMY_07100	COG4221	oxidoreductase activity
BAMY_07100	COG3321	synthase
BAMY_07100	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BAMY_07100	COG1028	Short-chain dehydrogenase reductase Sdr
BAMY_07105	COG0300	oxidoreductase activity
BAMY_07105	COG3321	synthase
BAMY_07105	COG4221	oxidoreductase activity
BAMY_07105	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BAMY_07110	COG3321	synthase
BAMY_07110	COG4221	oxidoreductase activity
BAMY_07110	COG1028	Short-chain dehydrogenase reductase Sdr
BAMY_07110	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BAMY_07115	COG3321	synthase
BAMY_07115	COG0300	oxidoreductase activity
BAMY_07115	COG4221	oxidoreductase activity
BAMY_07115	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BAMY_07120	COG4221	oxidoreductase activity
BAMY_07120	COG0300	oxidoreductase activity
BAMY_07120	COG3321	synthase
BAMY_07120	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BAMY_07125	COG3321	synthase
BAMY_07125	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BAMY_07125	COG4221	oxidoreductase activity
BAMY_07125	COG0300	oxidoreductase activity
BAMY_07130	COG4221	oxidoreductase activity
BAMY_07130	COG1028	Short-chain dehydrogenase reductase Sdr
BAMY_07130	COG3321	synthase
BAMY_07130	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BAMY_07135	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
BAMY_07140	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
BAMY_07145	COG0022	dehydrogenase e1 component
BAMY_07150	COG0508	dehydrogenase complex catalyzes the overall conversion of
BAMY_07155	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BAMY_07160	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BAMY_07170	COG1982	Orn Lys Arg decarboxylase major
BAMY_07190	COG0483	inositol monophosphate 1-phosphatase activity
BAMY_07200	COG3227	Zinc metalloprotease (Elastase)
BAMY_07230	COG4896	Protein conserved in bacteria
BAMY_07240	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
BAMY_07245	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
BAMY_07250	COG2066	Belongs to the glutaminase family
BAMY_07260	COG0772	Belongs to the SEDS family
BAMY_07265	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
BAMY_07280	COG2010	Cytochrome c
BAMY_07280	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
BAMY_07285	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
BAMY_07290	COG1845	cytochrome c oxidase, subunit III
BAMY_07295	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
BAMY_07300	COG3336	cytochrome c oxidase
BAMY_07310	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
BAMY_07315	COG2340	Cysteine-rich secretory protein family
BAMY_07330	COG3679	Belongs to the UPF0342 family
BAMY_07345	COG0742	ribosomal rna small subunit methyltransferase
BAMY_07355	COG3314	Sporulation integral membrane protein YlbJ
BAMY_07360	COG1752	Esterase of the alpha-beta hydrolase superfamily
BAMY_07365	COG3480	Lon protease (S16) C-terminal proteolytic domain
BAMY_07375	COG1399	metal-binding, possibly nucleic acid-binding protein
BAMY_07390	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
BAMY_07410	COG4839	cell division protein FtsL
BAMY_07420	COG0768	penicillin binding
BAMY_07440	COG0772	Belongs to the SEDS family
BAMY_07455	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
BAMY_07460	COG0849	cell division
BAMY_07465	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
BAMY_07470	COG1404	Belongs to the peptidase S8 family
BAMY_07470	COG4412	M6 family metalloprotease domain protein
BAMY_07480	COG1191	sigma factor activity
BAMY_07485	COG1191	sigma factor activity
BAMY_07490	COG1119	ATPase activity
BAMY_07495	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BAMY_07500	COG1873	PFAM PRC-barrel domain
BAMY_07510	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
BAMY_07520	COG0762	integral membrane protein
BAMY_07525	COG2302	S4 RNA-binding domain
BAMY_07530	COG3599	regulation of cell shape
BAMY_07540	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
BAMY_07545	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
BAMY_07555	COG0564	pseudouridine synthase activity
BAMY_07565	COG2233	PERMEase
BAMY_07575	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
BAMY_07580	COG0505	Belongs to the CarA family
BAMY_07585	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
BAMY_07600	COG0284	orotidine-5'-phosphate decarboxylase activity
BAMY_07605	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
BAMY_07615	COG0306	phosphate transporter
BAMY_07630	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
BAMY_07635	COG2138	Cobalamin (vitamin B12) biosynthesis CbiX protein
BAMY_07640	COG1648	precorrin-2 dehydrogenase activity
BAMY_07650	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
BAMY_07655	COG1561	YicC-like family, N-terminal region
BAMY_07660	COG2052	Domain of unknown function (DUF370)
BAMY_07665	COG0194	GDP metabolic process
BAMY_07675	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
BAMY_07680	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
BAMY_07685	COG0242	peptide deformylase activity
BAMY_07695	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
BAMY_07695	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
BAMY_07705	COG0631	protein serine/threonine phosphatase activity
BAMY_07710	COG2815	serine threonine protein kinase
BAMY_07710	COG0515	serine threonine protein kinase
BAMY_07720	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
BAMY_07725	COG1564	THIamine pyrophosphokinase
BAMY_07740	COG1302	Protein conserved in bacteria
BAMY_07745	COG1461	Dihydroxyacetone kinase
BAMY_07750	COG1760	l-serine dehydratase
BAMY_07755	COG1760	l-serine dehydratase
BAMY_07760	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
BAMY_07775	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
BAMY_07780	COG1028	Short-chain dehydrogenase reductase Sdr
BAMY_07785	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BAMY_07795	COG1196	nuclear chromosome segregation
BAMY_07800	COG0552	protein localization to endoplasmic reticulum
BAMY_07815	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
BAMY_07825	COG1837	Belongs to the UPF0109 family
BAMY_07850	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
BAMY_07865	COG2257	FlhB HrpN YscU SpaS Family
BAMY_07875	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
BAMY_07880	COG0758	DNA mediated transformation
BAMY_07885	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
BAMY_07895	COG4974	Belongs to the 'phage' integrase family
BAMY_07915	COG1815	bacterial-type flagellum-dependent cell motility
BAMY_07920	COG1558	bacterial-type flagellum-dependent cell motility
BAMY_07925	COG1677	Flagellar hook-basal body complex protein FliE
BAMY_07930	COG1766	The M ring may be actively involved in energy transduction
BAMY_07935	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
BAMY_07940	COG1317	bacterial-type flagellum organization
BAMY_07945	COG1157	protein secretion by the type III secretion system
BAMY_07950	COG2882	bacterial-type flagellum organization
BAMY_07955	COG3334	PFAM MgtE intracellular
BAMY_07960	COG3144	bacterial-type flagellum assembly
BAMY_07965	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
BAMY_07970	COG4786	Flagellar basal body rod
BAMY_07975	COG1582	Flagellar protein (FlbD)
BAMY_07980	COG1580	Controls the rotational direction of flagella during chemotaxis
BAMY_07985	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
BAMY_07990	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
BAMY_07990	COG1776	CheC inhibitor of MCP methylation
BAMY_07995	COG2201	protein-glutamate methylesterase activity
BAMY_08000	COG3190	flagellar
BAMY_08005	COG1338	Plays a role in the flagellum-specific transport system
BAMY_08010	COG1987	bacterial-type flagellum assembly
BAMY_08015	COG1684	flagellar biosynthetic protein fliR
BAMY_08020	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
BAMY_08025	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
BAMY_08030	COG1419	protein localization to endoplasmic reticulum
BAMY_08035	COG0455	bacterial-type flagellum organization
BAMY_08040	COG2201	protein-glutamate methylesterase activity
BAMY_08045	COG0643	Histidine kinase
BAMY_08045	COG2198	Histidine kinase
BAMY_08050	COG0835	chemotaxis
BAMY_08055	COG1776	CheC inhibitor of MCP methylation
BAMY_08065	COG1191	sigma factor activity
BAMY_08095	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
BAMY_08100	COG4589	Belongs to the CDS family
BAMY_08110	COG0750	zinc metalloprotease
BAMY_08120	COG2176	DNA-directed DNA polymerase activity
BAMY_08130	COG0195	Participates in both transcription termination and antitermination
BAMY_08135	COG2740	Nucleic-acid-binding protein implicated in transcription termination
BAMY_08140	COG1358	cellular component organization or biogenesis
BAMY_08150	COG1550	Protein conserved in bacteria
BAMY_08165	COG0196	riboflavin kinase activity
BAMY_08180	COG0726	polysaccharide deacetylase
BAMY_08185	COG0612	Peptidase, M16
BAMY_08190	COG1873	PFAM PRC-barrel domain
BAMY_08195	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BAMY_08200	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
BAMY_08205	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
BAMY_08210	COG0527	aspartate kinase activity
BAMY_08220	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
BAMY_08225	COG0740	serine-type endopeptidase activity
BAMY_08235	COG4980	gas vesicle protein
BAMY_08235	COG1674	ftsk spoiiie
BAMY_08240	COG2188	Transcriptional regulator
BAMY_08245	COG2814	Major facilitator Superfamily
BAMY_08250	COG1846	Transcriptional regulator
BAMY_08255	COG2409	Drug exporters of the RND superfamily
BAMY_08255	COG1033	growth of symbiont in host cell
BAMY_08260	COG0612	Peptidase, M16
BAMY_08265	COG0612	Peptidase, M16
BAMY_08270	COG0300	oxidoreductase activity
BAMY_08285	COG1426	Protein conserved in bacteria
BAMY_08290	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
BAMY_08305	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
BAMY_08315	COG1692	metallophosphoesterase
BAMY_08320	COG2359	stage V sporulation protein S
BAMY_08340	COG4550	Control of competence regulator ComK, YlbF/YmcA
BAMY_08385	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BAMY_08390	COG3425	synthase
BAMY_08395	COG1024	Enoyl-CoA hydratase
BAMY_08400	COG1024	Enoyl-CoA hydratase
BAMY_08405	COG3321	synthase
BAMY_08405	COG1028	Short-chain dehydrogenase reductase Sdr
BAMY_08405	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BAMY_08405	COG0300	oxidoreductase activity
BAMY_08405	COG0318	PFAM AMP-dependent synthetase and ligase
BAMY_08410	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BAMY_08410	COG0300	oxidoreductase activity
BAMY_08410	COG3321	synthase
BAMY_08410	COG4221	oxidoreductase activity
BAMY_08415	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BAMY_08415	COG3321	synthase
BAMY_08415	COG3321	synthase
BAMY_08415	COG1028	Short-chain dehydrogenase reductase Sdr
BAMY_08415	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BAMY_08415	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BAMY_08415	COG1028	Short-chain dehydrogenase reductase Sdr
BAMY_08415	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BAMY_08415	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BAMY_08415	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BAMY_08420	COG1028	Short-chain dehydrogenase reductase Sdr
BAMY_08420	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BAMY_08420	COG4221	oxidoreductase activity
BAMY_08420	COG3321	synthase
BAMY_08425	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BAMY_08425	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
BAMY_08425	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
BAMY_08425	COG3321	synthase
BAMY_08430	COG2124	cytochrome p450
BAMY_08435	COG3209	COG3209 Rhs family protein
BAMY_08440	COG3619	membrane
BAMY_08450	COG1404	Belongs to the peptidase S8 family
BAMY_08460	COG4195	phage-related replication protein
BAMY_08465	COG1764	response to oxidative stress
BAMY_08475	COG2076	Multidrug Resistance protein
BAMY_08515	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BAMY_08520	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BAMY_08525	COG4112	unkown
BAMY_08530	COG0860	N-Acetylmuramoyl-L-alanine amidase
BAMY_08540	COG0464	growth
BAMY_08545	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
BAMY_08550	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
BAMY_08555	COG0789	Transcriptional regulator
BAMY_08560	COG0174	glutamine synthetase
BAMY_08605	COG2211	Major facilitator Superfamily
BAMY_08610	COG3507	Belongs to the glycosyl hydrolase 43 family
BAMY_08625	COG1070	Carbohydrate kinase
BAMY_08630	COG0574	Belongs to the PEP-utilizing enzyme family
BAMY_08630	COG3848	Pyruvate phosphate dikinase
BAMY_08645	COG2378	regulation of single-species biofilm formation
BAMY_08650	COG2318	DinB family
BAMY_08655	COG1064	alcohol dehydrogenase
BAMY_08705	COG3397	chitin binding
BAMY_08710	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BAMY_08720	COG5434	Belongs to the glycosyl hydrolase 28 family
BAMY_08730	COG0756	dUTP diphosphatase activity
BAMY_08735	COG4195	phage-related replication protein
BAMY_08765	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
BAMY_08775	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
BAMY_08795	COG0785	Cytochrome C biogenesis protein
BAMY_08800	COG2201	protein-glutamate methylesterase activity
BAMY_08805	COG4846	Membrane protein involved in cytochrome C biogenesis
BAMY_08815	COG0071	Belongs to the small heat shock protein (HSP20) family
BAMY_08830	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
BAMY_08835	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BAMY_08855	COG0824	Thioesterase
BAMY_08865	COG4841	protein insertion into membrane
BAMY_08875	COG1832	CoA-binding protein
BAMY_08880	COG0187	DNA topoisomerase II activity
BAMY_08885	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
BAMY_08895	COG1115	amino acid carrier protein
BAMY_08905	COG1063	alcohol dehydrogenase
BAMY_08910	COG0800	Aldolase
BAMY_08915	COG1312	Catalyzes the dehydration of D-mannonate
BAMY_08920	COG1028	Short-chain dehydrogenase reductase Sdr
BAMY_08925	COG1609	Transcriptional regulator
BAMY_08930	COG2271	Major facilitator Superfamily
BAMY_08980	COG2205	protein histidine kinase activity
BAMY_08985	COG0745	RESPONSE REGULATOR receiver
BAMY_08995	COG3507	Belongs to the glycosyl hydrolase 43 family
BAMY_09020	COG1028	Short-chain dehydrogenase reductase Sdr
BAMY_09025	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
BAMY_09030	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
BAMY_09035	COG2610	gluconate transmembrane transporter activity
BAMY_09040	COG2124	cytochrome p450
BAMY_09045	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
BAMY_09060	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
BAMY_09070	COG2246	polysaccharide biosynthetic process
BAMY_09075	COG1210	Utp--glucose-1-phosphate uridylyltransferase
BAMY_09080	COG0586	Pfam SNARE associated Golgi protein
BAMY_09085	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
BAMY_09090	COG1024	Enoyl-CoA hydratase
BAMY_09095	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
BAMY_09100	COG0511	ligase activity, forming carbon-carbon bonds
BAMY_09105	COG0439	Biotin carboxylase
BAMY_09110	COG0318	PFAM AMP-dependent synthetase and ligase
BAMY_09115	COG1960	acyl-CoA dehydrogenase activity
BAMY_09120	COG1649	PFAM Uncharacterised BCR, COG1649
BAMY_09130	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
BAMY_09130	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BAMY_09135	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BAMY_09140	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BAMY_09145	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BAMY_09150	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BAMY_09155	COG2027	D-alanyl-D-alanine carboxypeptidase
BAMY_09160	COG2017	converts alpha-aldose to the beta-anomer
BAMY_09165	COG0534	Mate efflux family protein
BAMY_09180	COG0582	viral genome integration into host DNA
BAMY_09185	COG0166	Belongs to the GPI family
BAMY_09190	COG0405	Gamma-glutamyltransferase
BAMY_09195	COG2814	Major facilitator Superfamily
BAMY_09200	COG0640	Transcriptional regulator
BAMY_09210	COG0604	alcohol dehydrogenase
BAMY_09215	COG0493	'glutamate synthase
BAMY_09220	COG0067	glutamate synthase
BAMY_09220	COG0070	glutamate synthase
BAMY_09220	COG0069	glutamate synthase activity
BAMY_09225	COG0583	DNA-binding transcription factor activity
BAMY_09230	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
BAMY_09245	COG0300	oxidoreductase activity
BAMY_09250	COG4768	protein containing a divergent version of the methyl-accepting chemotaxis-like domain
BAMY_09260	COG2814	Major facilitator Superfamily
BAMY_09265	COG1070	Carbohydrate kinase
BAMY_09270	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
BAMY_09275	COG0243	molybdopterin cofactor binding
BAMY_09300	COG1028	Short-chain dehydrogenase reductase Sdr
BAMY_09305	COG1733	regulation of RNA biosynthetic process
BAMY_09310	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BAMY_09315	COG2207	Transcriptional regulator
BAMY_09315	COG0662	Cupin 2, conserved barrel domain protein
BAMY_09320	COG1309	transcriptional regulator
BAMY_09325	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BAMY_09335	COG0640	Transcriptional regulator
BAMY_09340	COG0741	lytic transglycosylase activity
BAMY_09345	COG2322	membrane
BAMY_09360	COG1619	proteins homologs of microcin C7 resistance protein MccF
BAMY_09370	COG1388	LysM domain
BAMY_09370	COG3584	3D domain protein
BAMY_09375	COG0514	ATP-dependent DNA helicase (RecQ)
BAMY_09385	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
BAMY_09390	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
BAMY_09405	COG0071	Belongs to the small heat shock protein (HSP20) family
BAMY_09430	COG1012	belongs to the aldehyde dehydrogenase family
BAMY_09435	COG1657	PFAM Prenyltransferase squalene oxidase
BAMY_09440	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
BAMY_09445	COG0733	neurotransmitter:sodium symporter activity
BAMY_09450	COG0385	Bile acid
BAMY_09455	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BAMY_09460	COG0508	dehydrogenase complex catalyzes the overall conversion of
BAMY_09470	COG4548	von Willebrand factor, type A
BAMY_09475	COG0714	Associated with various cellular activities
BAMY_09485	COG0791	NLP P60 protein
BAMY_09485	COG1388	LysM domain
BAMY_09490	COG1819	glycosyl
BAMY_09495	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
BAMY_09500	COG0534	Mate efflux family protein
BAMY_09510	COG0457	Tetratricopeptide repeat
BAMY_09530	COG3409	Peptidoglycan-binding domain 1 protein
BAMY_09530	COG5632	N-Acetylmuramoyl-L-alanine amidase
BAMY_09535	COG4824	toxin secretion phage lysis holin
BAMY_09555	COG5434	Belongs to the glycosyl hydrolase 28 family
BAMY_09635	COG4626	Terminase
BAMY_09635	COG1802	Transcriptional regulator
BAMY_09675	COG1595	DNA-templated transcription, initiation
BAMY_09690	COG0305	Participates in initiation and elongation during chromosome replication
BAMY_09715	COG3646	Phage regulatory protein
BAMY_09715	COG3645	SOS response
BAMY_09750	COG0582	viral genome integration into host DNA
BAMY_09755	COG1366	Belongs to the anti-sigma-factor antagonist family
BAMY_09760	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
BAMY_09765	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
BAMY_09775	COG2962	Rard protein
BAMY_09790	COG1942	4-Oxalocrotonate Tautomerase
BAMY_09800	COG1733	regulation of RNA biosynthetic process
BAMY_09805	COG0778	Nitroreductase
BAMY_09810	COG0400	carboxylic ester hydrolase activity
BAMY_09815	COG0346	lactoylglutathione lyase activity
BAMY_09825	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BAMY_09835	COG2723	6-phospho-beta-galactosidase activity
BAMY_09840	COG2188	Transcriptional regulator
BAMY_09845	COG0793	Belongs to the peptidase S41A family
BAMY_09845	COG3409	Peptidoglycan-binding domain 1 protein
BAMY_09850	COG2226	methyltransferase
BAMY_09860	COG1876	peptidase activity
BAMY_09875	COG0671	phosphoesterase, PA-phosphatase related
BAMY_09910	COG1509	lysine 2,3-aminomutase activity
BAMY_09915	COG0456	acetyltransferase
BAMY_09920	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BAMY_09925	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
BAMY_09930	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
BAMY_09935	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
BAMY_09940	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
BAMY_09950	COG0456	acetyltransferase
BAMY_09955	COG0463	Glycosyl transferase, family 2
BAMY_09970	COG4641	Protein conserved in bacteria
BAMY_09980	COG1086	Polysaccharide biosynthesis protein
BAMY_10010	COG1793	dna ligase
BAMY_10025	COG1388	LysM domain
BAMY_10075	COG5444	nuclease activity
BAMY_10080	COG4282	regulation of fungal-type cell wall biogenesis
BAMY_10085	COG1525	nuclease
BAMY_10105	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
BAMY_10125	COG1846	Transcriptional regulator
BAMY_10130	COG4698	Protein conserved in bacteria
BAMY_10135	COG2755	lipolytic protein G-D-S-L family
BAMY_10140	COG1999	signal sequence binding
BAMY_10150	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
BAMY_10155	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
BAMY_10160	COG1272	protein, Hemolysin III
BAMY_10165	COG0204	Acyl-transferase
BAMY_10170	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
BAMY_10185	COG2136	Putative SAM-dependent methyltransferase
BAMY_10185	COG2521	methyltransferase
BAMY_10200	COG1413	lyase activity
BAMY_10205	COG1418	mRNA catabolic process
BAMY_10210	COG0386	Belongs to the glutathione peroxidase family
BAMY_10220	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
BAMY_10225	COG1278	Cold shock
BAMY_10245	COG0328	RNA-DNA hybrid ribonuclease activity
BAMY_10250	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
BAMY_10255	COG0328	RNA-DNA hybrid ribonuclease activity
BAMY_10265	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BAMY_10275	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
BAMY_10280	COG1755	Isoprenylcysteine carboxyl methyltransferase
BAMY_10285	COG3424	synthase
BAMY_10310	COG1335	isochorismatase
BAMY_10355	COG4824	toxin secretion phage lysis holin
BAMY_10375	COG5434	Belongs to the glycosyl hydrolase 28 family
BAMY_10380	COG1705	Flagellar rod assembly protein muramidase FlgJ
BAMY_10390	COG3953	SLT domain
BAMY_10390	COG5280	Phage tail tape measure protein TP901
BAMY_10480	COG1595	DNA-templated transcription, initiation
BAMY_10505	COG4570	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC
BAMY_10510	COG1484	DNA-dependent DNA replication
BAMY_10515	COG3935	DnaD domain protein
BAMY_10570	COG3620	sequence-specific DNA binding
BAMY_10575	COG0582	viral genome integration into host DNA
BAMY_10580	COG2233	PERMEase
BAMY_10590	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
BAMY_10595	COG1199	ATP-dependent helicase activity
BAMY_10605	COG0116	Belongs to the methyltransferase superfamily
BAMY_10625	COG3359	exonuclease
BAMY_10630	COG1111	helicase
BAMY_10630	COG1205	dead DEAH box helicase
BAMY_10635	COG2190	(PTS) system
BAMY_10640	COG0071	Belongs to the small heat shock protein (HSP20) family
BAMY_10680	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BAMY_10680	COG4499	WXG100 protein secretion system (Wss), protein YukC
BAMY_10690	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
BAMY_10695	COG3935	DnaD domain protein
BAMY_10705	COG0436	Aminotransferase
BAMY_10710	COG5353	protein conserved in bacteria
BAMY_10720	COG1199	ATP-dependent helicase activity
BAMY_10720	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BAMY_10750	COG0438	transferase activity, transferring glycosyl groups
BAMY_10755	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
BAMY_10770	COG1694	Mazg nucleotide pyrophosphohydrolase
BAMY_10775	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BAMY_10780	COG2140	Oxalate decarboxylase
BAMY_10790	COG4347	Protein of unknown function (DUF1405)
BAMY_10795	COG2010	Cytochrome c
BAMY_10795	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
BAMY_10800	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
BAMY_10805	COG0723	plastoquinol--plastocyanin reductase activity
BAMY_10820	COG0457	Tetratricopeptide repeat
BAMY_10830	COG0287	Prephenate dehydrogenase
BAMY_10865	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
BAMY_10870	COG4401	Chorismate mutase type I
BAMY_10885	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
BAMY_10890	COG0105	UTP biosynthetic process
BAMY_10895	COG0142	geranyltranstransferase activity
BAMY_10905	COG0142	geranyltranstransferase activity
BAMY_10920	COG0776	regulation of translation
BAMY_10925	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
BAMY_10965	COG0539	negative regulation of cytoplasmic translation
BAMY_10975	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
BAMY_10980	COG2959	enzyme of heme biosynthesis
BAMY_10985	COG3409	Peptidoglycan-binding domain 1 protein
BAMY_10985	COG3773	Cell wall hydrolase
BAMY_10990	COG2339	peptidase activity
BAMY_10995	COG0492	ferredoxin-NADP+ reductase activity
BAMY_11000	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
BAMY_11005	COG4862	establishment of competence for transformation
BAMY_11010	COG1408	metallophosphoesterase
BAMY_11020	COG1388	LysM domain
BAMY_11025	COG1266	CAAX protease self-immunity
BAMY_11030	COG0514	ATP-dependent DNA helicase (RecQ)
BAMY_11035	COG4955	Helix-turn-helix domain
BAMY_11040	COG1141	Ferredoxin
BAMY_11045	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
BAMY_11050	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
BAMY_11060	COG1595	DNA-templated transcription, initiation
BAMY_11065	COG5002	protein histidine kinase activity
BAMY_11070	COG0745	RESPONSE REGULATOR receiver
BAMY_11075	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BAMY_11080	COG1333	cytochrome c biogenesis protein
BAMY_11085	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BAMY_11090	COG1187	pseudouridine synthase activity
BAMY_11095	COG0700	Nucleoside recognition
BAMY_11100	COG2715	membrane protein required for spore maturation
BAMY_11105	COG1686	Belongs to the peptidase S11 family
BAMY_11125	COG1547	Domain of unknown function (DUF309)
BAMY_11130	COG0456	acetyltransferase
BAMY_11145	COG0307	riboflavin synthase, alpha
BAMY_11150	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BAMY_11150	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BAMY_11160	COG0681	Belongs to the peptidase S26 family
BAMY_11170	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
BAMY_11175	COG4086	secreted protein
BAMY_11180	COG0019	diaminopimelate decarboxylase activity
BAMY_11185	COG0697	spore germination
BAMY_11200	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BAMY_11220	COG1191	sigma factor activity
BAMY_11230	COG1366	Belongs to the anti-sigma-factor antagonist family
BAMY_11235	COG1686	Belongs to the peptidase S11 family
BAMY_11240	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
BAMY_11245	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
BAMY_11250	COG4974	Belongs to the 'phage' integrase family
BAMY_11260	COG0735	belongs to the Fur family
BAMY_11265	COG1300	Membrane
BAMY_11280	COG0281	malic enzyme
BAMY_11285	COG1757	Na H antiporter
BAMY_11290	COG1027	Aspartate ammonia-lyase
BAMY_11295	COG0252	asparaginase activity
BAMY_11300	COG1396	sequence-specific DNA binding
BAMY_11305	COG1379	DNA repair
BAMY_11310	COG0494	nUDIX hydrolase
BAMY_11320	COG0667	Aldo Keto reductase
BAMY_11330	COG1073	alpha beta
BAMY_11340	COG4918	Iron-sulphur cluster biosynthesis
BAMY_11345	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
BAMY_11345	COG0456	acetyltransferase
BAMY_11350	COG2329	Antibiotic biosynthesis monooxygenase
BAMY_11355	COG0456	acetyltransferase
BAMY_11360	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
BAMY_11375	COG0628	permease
BAMY_11380	COG0346	lactoylglutathione lyase activity
BAMY_11390	COG3048	D-serine ammonia-lyase activity
BAMY_11395	COG0300	oxidoreductase activity
BAMY_11400	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BAMY_11405	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
BAMY_11410	COG1024	Enoyl-CoA hydratase
BAMY_11415	COG3425	synthase
BAMY_11420	COG2124	cytochrome p450
BAMY_11425	COG3321	synthase
BAMY_11425	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BAMY_11425	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BAMY_11425	COG1028	Short-chain dehydrogenase reductase Sdr
BAMY_11425	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BAMY_11430	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BAMY_11430	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BAMY_11430	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BAMY_11430	COG3321	synthase
BAMY_11430	COG1028	Short-chain dehydrogenase reductase Sdr
BAMY_11435	COG0300	oxidoreductase activity
BAMY_11435	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BAMY_11435	COG1028	Short-chain dehydrogenase reductase Sdr
BAMY_11435	COG0318	PFAM AMP-dependent synthetase and ligase
BAMY_11435	COG3321	synthase
BAMY_11440	COG0318	PFAM AMP-dependent synthetase and ligase
BAMY_11440	COG1028	Short-chain dehydrogenase reductase Sdr
BAMY_11440	COG3321	synthase
BAMY_11440	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BAMY_11440	COG0300	oxidoreductase activity
BAMY_11445	COG3321	synthase
BAMY_11445	COG1028	Short-chain dehydrogenase reductase Sdr
BAMY_11445	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BAMY_11445	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BAMY_11445	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BAMY_11450	COG3321	synthase
BAMY_11450	COG1028	Short-chain dehydrogenase reductase Sdr
BAMY_11450	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BAMY_11450	COG0318	PFAM AMP-dependent synthetase and ligase
BAMY_11450	COG0300	oxidoreductase activity
BAMY_11455	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BAMY_11455	COG1028	Short-chain dehydrogenase reductase Sdr
BAMY_11455	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BAMY_11455	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BAMY_11455	COG3321	synthase
BAMY_11460	COG1028	Short-chain dehydrogenase reductase Sdr
BAMY_11465	COG0318	PFAM AMP-dependent synthetase and ligase
BAMY_11480	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
BAMY_11480	COG2070	2-Nitropropane dioxygenase
BAMY_11485	COG0250	Participates in transcription elongation, termination and antitermination
BAMY_11505	COG0596	Alpha beta hydrolase
BAMY_11520	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
BAMY_11525	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
BAMY_11540	COG0706	membrane insertase activity
BAMY_11545	COG2195	Cleaves the N-terminal amino acid of tripeptides
BAMY_11550	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
BAMY_11555	COG0346	lactoylglutathione lyase activity
BAMY_11560	COG1376	ErfK ybiS ycfS ynhG family protein
BAMY_11565	COG4129	membrane
BAMY_11570	COG1126	abc transporter atp-binding protein
BAMY_11575	COG0765	amino acid transport
BAMY_11580	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BAMY_11590	COG1597	lipid kinase activity
BAMY_11595	COG0508	dehydrogenase complex catalyzes the overall conversion of
BAMY_11600	COG0022	dehydrogenase e1 component
BAMY_11605	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
BAMY_11610	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BAMY_11615	COG3426	butyrate kinase activity
BAMY_11620	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
BAMY_11625	COG0280	phosphate acetyltransferase
BAMY_11630	COG3290	protein histidine kinase activity
BAMY_11630	COG3829	transcription factor binding
BAMY_11640	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
BAMY_11645	COG2079	MmgE PrpD family protein
BAMY_11650	COG0372	Belongs to the citrate synthase family
BAMY_11655	COG1960	acyl-CoA dehydrogenase activity
BAMY_11660	COG1250	3-hydroxyacyl-CoA dehydrogenase
BAMY_11665	COG0183	Belongs to the thiolase family
BAMY_11670	COG0584	glycerophosphoryl diester phosphodiesterase
BAMY_11675	COG0860	N-Acetylmuramoyl-L-alanine amidase
BAMY_11700	COG1902	pentaerythritol trinitrate reductase activity
BAMY_11715	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
BAMY_11720	COG0745	RESPONSE REGULATOR receiver
BAMY_11725	COG0750	zinc metalloprotease
BAMY_11730	COG0497	DNA recombination
BAMY_11740	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
BAMY_11750	COG0142	geranyltranstransferase activity
BAMY_11760	COG1570	exodeoxyribonuclease VII activity
BAMY_11775	COG1302	Protein conserved in bacteria
BAMY_11780	COG0439	Biotin carboxylase
BAMY_11785	COG0511	ligase activity, forming carbon-carbon bonds
BAMY_11825	COG3854	ATPases associated with a variety of cellular activities
BAMY_11840	COG0006	proline dipeptidase activity
BAMY_11850	COG3872	metal-dependent enzyme
BAMY_11860	COG1752	Esterase of the alpha-beta hydrolase superfamily
BAMY_11875	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BAMY_11895	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
BAMY_11910	COG1396	sequence-specific DNA binding
BAMY_11920	COG0681	Belongs to the peptidase S26 family
BAMY_11945	COG4940	Competence protein ComGF
BAMY_11955	COG4970	Tfp pilus assembly protein FimT
BAMY_11960	COG4537	Required for transformation and DNA binding
BAMY_11965	COG1459	type II secretion system
BAMY_11970	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BAMY_11975	COG0598	Magnesium transport protein CorA
BAMY_11980	COG1253	flavin adenine dinucleotide binding
BAMY_11985	COG1366	Belongs to the anti-sigma-factor antagonist family
BAMY_11995	COG1393	Belongs to the ArsC family
BAMY_12005	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BAMY_12015	COG0011	TIGRFAM Protein of
BAMY_12025	COG2866	Carboxypeptidase
BAMY_12030	COG1940	carbohydrate kinase activity
BAMY_12035	COG4483	Protein conserved in bacteria
BAMY_12040	COG1757	Na H antiporter
BAMY_12045	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
BAMY_12055	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
BAMY_12060	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
BAMY_12065	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
BAMY_12070	COG0581	inorganic phosphate transmembrane transporter activity
BAMY_12075	COG0573	inorganic phosphate transmembrane transporter activity
BAMY_12080	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
BAMY_12090	COG0477	Major facilitator Superfamily
BAMY_12095	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
BAMY_12100	COG2839	Protein conserved in bacteria
BAMY_12105	COG5521	maltodextrose utilization protein MalA
BAMY_12110	COG1388	LysM domain
BAMY_12120	COG4709	membrane
BAMY_12125	COG5663	Belongs to the 5'(3')-deoxyribonucleotidase family
BAMY_12130	COG0735	belongs to the Fur family
BAMY_12135	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BAMY_12150	COG0513	Belongs to the DEAD box helicase family
BAMY_12165	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
BAMY_12170	COG2384	SAM-dependent methyltransferase
BAMY_12175	COG2010	Cytochrome c
BAMY_12180	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
BAMY_12185	COG0358	DNA primase activity
BAMY_12200	COG0517	IMP dehydrogenase activity
BAMY_12205	COG0751	glycine-tRNA ligase activity
BAMY_12225	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
BAMY_12230	COG0295	cytidine deaminase activity
BAMY_12235	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
BAMY_12245	COG1480	7TM receptor with intracellular HD hydrolase
BAMY_12250	COG1702	phosphate starvation-inducible protein PhoH
BAMY_12255	COG0561	phosphatase activity
BAMY_12270	COG4864	UPF0365 protein
BAMY_12275	COG1030	water channel activity
BAMY_12280	COG1610	YqeY-like protein
BAMY_12285	COG0828	Belongs to the bacterial ribosomal protein bS21 family
BAMY_12290	COG1283	sodium-dependent phosphate transmembrane transporter activity
BAMY_12295	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
BAMY_12300	COG1385	rRNA (uridine-N3-)-methyltransferase activity
BAMY_12330	COG0635	Involved in the biosynthesis of porphyrin-containing compound
BAMY_12345	COG0860	N-Acetylmuramoyl-L-alanine amidase
BAMY_12360	COG1466	dna polymerase III delta subunit
BAMY_12370	COG0658	competence protein
BAMY_12370	COG2333	competence protein COMEC
BAMY_12375	COG2131	deaminase
BAMY_12380	COG1596	polysaccharide export
BAMY_12380	COG1555	photosystem II stabilization
BAMY_12385	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
BAMY_12390	COG2226	methyltransferase
BAMY_12395	COG0799	negative regulation of ribosome biogenesis
BAMY_12400	COG1713	HD superfamily hydrolase involved in NAD metabolism
BAMY_12410	COG1534	Rna-binding protein
BAMY_12415	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
BAMY_12420	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
BAMY_12425	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
BAMY_12435	COG2755	lipolytic protein G-D-S-L family
BAMY_12440	COG0726	polysaccharide deacetylase
BAMY_12445	COG0398	Pfam SNARE associated Golgi protein
BAMY_12470	COG2207	Transcriptional regulator
BAMY_12470	COG3708	Transcriptional regulator
BAMY_12480	COG0563	adenylate kinase activity
BAMY_12490	COG2814	Major facilitator Superfamily
BAMY_12495	COG0456	acetyltransferase
BAMY_12500	COG2318	DinB family
BAMY_12510	COG0561	phosphatase activity
BAMY_12515	COG0561	phosphatase activity
BAMY_12525	COG1482	cell wall glycoprotein biosynthetic process
BAMY_12530	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BAMY_12530	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BAMY_12530	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BAMY_12535	COG3711	transcriptional antiterminator
BAMY_12535	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BAMY_12545	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
BAMY_12550	COG0583	DNA-binding transcription factor activity
BAMY_12555	COG2814	Major facilitator Superfamily
BAMY_12560	COG2124	cytochrome p450
BAMY_12560	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
BAMY_12565	COG1309	transcriptional regulator
BAMY_12570	COG2226	methyltransferase
BAMY_12585	COG2116	formate transmembrane transporter activity
BAMY_12590	COG5609	conserved protein (DUF2294)
BAMY_12595	COG3383	formate dehydrogenase (NAD+) activity
BAMY_12600	COG2427	Protein of unknown function (DUF1641)
BAMY_12610	COG0626	cystathionine gamma-synthase activity
BAMY_12615	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
BAMY_12640	COG0768	penicillin binding
BAMY_12670	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
BAMY_12685	COG4472	Bacterial protein of unknown function (DUF965)
BAMY_12695	COG0628	permease
BAMY_12700	COG1126	abc transporter atp-binding protein
BAMY_12705	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BAMY_12710	COG0765	amino acid transport
BAMY_12715	COG0765	amino acid transport
BAMY_12730	COG3881	PFAM PRC-barrel domain
BAMY_12735	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
BAMY_12740	COG0457	Tetratricopeptide repeat
BAMY_12750	COG1104	cysteine desulfurase activity
BAMY_12755	COG1959	2 iron, 2 sulfur cluster binding
BAMY_12760	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
BAMY_12765	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
BAMY_12785	COG0860	N-Acetylmuramoyl-L-alanine amidase
BAMY_12785	COG3103	Sh3 type 3 domain protein
BAMY_12785	COG4991	sh3 domain protein
BAMY_12795	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BAMY_12805	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
BAMY_12805	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
BAMY_12810	COG5416	Lipopolysaccharide assembly protein A domain
BAMY_12815	COG0490	domain, Protein
BAMY_12820	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
BAMY_12820	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
BAMY_12830	COG2244	polysaccharide biosynthetic process
BAMY_12835	COG2323	membrane
BAMY_12845	COG1862	Preprotein translocase
BAMY_12890	COG1388	LysM domain
BAMY_12900	COG0157	Belongs to the NadC ModD family
BAMY_12905	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
BAMY_12910	COG1104	cysteine desulfurase activity
BAMY_12915	COG1827	regulation of RNA biosynthetic process
BAMY_12920	COG0077	Prephenate dehydratase
BAMY_12935	COG3290	protein histidine kinase activity
BAMY_12940	COG0211	Belongs to the bacterial ribosomal protein bL27 family
BAMY_12945	COG2868	ribosomal protein
BAMY_12955	COG1994	Peptidase M50
BAMY_12960	COG0739	heme binding
BAMY_12965	COG2894	cell division
BAMY_12975	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
BAMY_12980	COG1792	Involved in formation and maintenance of cell shape
BAMY_12985	COG1077	Cell shape determining protein MreB Mrl
BAMY_13005	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
BAMY_13010	COG0285	dihydrofolate synthase activity
BAMY_13015	COG0525	valine-tRNA ligase activity
BAMY_13025	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
BAMY_13030	COG1388	LysM domain
BAMY_13040	COG0113	porphobilinogen synthase activity
BAMY_13045	COG1587	Uroporphyrinogen-III synthase
BAMY_13055	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BAMY_13075	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
BAMY_13080	COG1067	ATP-dependent peptidase activity
BAMY_13080	COG0470	DNA polymerase III
BAMY_13095	COG1477	protein flavinylation
BAMY_13095	COG0457	Tetratricopeptide repeat
BAMY_13110	COG0473	3-isopropylmalate dehydrogenase activity
BAMY_13125	COG0440	acetolactate synthase activity
BAMY_13130	COG0028	Belongs to the TPP enzyme family
BAMY_13150	COG2801	Transposase and inactivated derivatives
BAMY_13170	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
BAMY_13190	COG0622	Phosphoesterase
BAMY_13195	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
BAMY_13205	COG5401	PFAM Sporulation and spore germination
BAMY_13215	COG1846	Transcriptional regulator
BAMY_13220	COG2197	response regulator
BAMY_13225	COG0824	Thioesterase
BAMY_13230	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
BAMY_13235	COG1053	succinate dehydrogenase
BAMY_13240	COG2009	succinate dehydrogenase
BAMY_13245	COG1719	4-vinyl reductase, 4VR
BAMY_13250	COG0527	aspartate kinase activity
BAMY_13260	COG3118	belongs to the thioredoxin family
BAMY_13265	COG3534	alpha-L-arabinofuranosidase
BAMY_13270	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
BAMY_13275	COG2086	electron transfer activity
BAMY_13280	COG1024	Enoyl-CoA hydratase
BAMY_13285	COG1309	transcriptional regulator
BAMY_13290	COG0318	PFAM AMP-dependent synthetase and ligase
BAMY_13300	COG3766	membrane
BAMY_13310	COG1796	DNA polymerase
BAMY_13310	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
BAMY_13315	COG1286	toxin biosynthetic process
BAMY_13330	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BAMY_13330	COG0072	phenylalanine-tRNA ligase activity
BAMY_13335	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
BAMY_13340	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BAMY_13350	COG3835	regulator
BAMY_13355	COG0277	FAD linked oxidase domain protein
BAMY_13360	COG0247	lactate metabolic process
BAMY_13365	COG1966	Carbon starvation protein
BAMY_13370	COG3534	alpha-L-arabinofuranosidase
BAMY_13375	COG0395	ABC-type sugar transport system, permease component
BAMY_13380	COG1175	transmembrane transport
BAMY_13385	COG1653	transport
BAMY_13395	COG0647	UMP catabolic process
BAMY_13400	COG0235	Class ii aldolase
BAMY_13405	COG1069	ribulokinase activity
BAMY_13410	COG2160	L-arabinose isomerase activity
BAMY_13415	COG3507	Belongs to the glycosyl hydrolase 43 family
BAMY_13420	COG1363	Peptidase, m42
BAMY_13430	COG3326	Membrane
BAMY_13435	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
BAMY_13445	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
BAMY_13450	COG1346	cytolysis
BAMY_13455	COG1380	Effector of murein hydrolase LrgA
BAMY_13460	COG3279	Response regulator of the LytR AlgR family
BAMY_13465	COG3275	phosphorelay sensor kinase activity
BAMY_13485	COG0398	Pfam SNARE associated Golgi protein
BAMY_13490	COG1484	DNA-dependent DNA replication
BAMY_13495	COG3611	Membrane attachment protein
BAMY_13510	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
BAMY_13515	COG1733	regulation of RNA biosynthetic process
BAMY_13520	COG2814	Major facilitator Superfamily
BAMY_13525	COG0656	L-ascorbic acid biosynthetic process
BAMY_13530	COG0237	dephospho-CoA kinase activity
BAMY_13535	COG1971	Probably functions as a manganese efflux pump
BAMY_13540	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
BAMY_13545	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BAMY_13545	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BAMY_13550	COG5002	protein histidine kinase activity
BAMY_13555	COG0745	RESPONSE REGULATOR receiver
BAMY_13565	COG0538	isocitrate dehydrogenase activity
BAMY_13570	COG0372	Belongs to the citrate synthase family
BAMY_13575	COG0457	Tetratricopeptide repeat
BAMY_13595	COG0628	permease
BAMY_13600	COG3030	protein affecting phage T7 exclusion by the F plasmid
BAMY_13605	COG0469	pyruvate kinase activity
BAMY_13630	COG0281	malic enzyme
BAMY_13635	COG0587	DNA-directed DNA polymerase activity
BAMY_13655	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
BAMY_13665	COG4109	DRTGG domain
BAMY_13675	COG1028	Short-chain dehydrogenase reductase Sdr
BAMY_13690	COG0521	Mo-molybdopterin cofactor biosynthetic process
BAMY_13700	COG0827	DNA restriction-modification system
BAMY_13705	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
BAMY_13710	COG3874	Sporulation protein YtfJ
BAMY_13720	COG1714	RDD family
BAMY_13725	COG0616	signal peptide processing
BAMY_13730	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
BAMY_13735	COG1574	metal-dependent hydrolase with the TIM-barrel fold
BAMY_13740	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
BAMY_13755	COG1104	cysteine desulfurase activity
BAMY_13760	COG1114	Component of the transport system for branched-chain amino acids
BAMY_13770	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
BAMY_13775	COG1309	transcriptional regulator
BAMY_13780	COG1956	GAF domain-containing protein
BAMY_13785	COG2203	Gaf domain
BAMY_13785	COG2199	diguanylate cyclase activity
BAMY_13800	COG1012	belongs to the aldehyde dehydrogenase family
BAMY_13805	COG4282	regulation of fungal-type cell wall biogenesis
BAMY_13830	COG0305	Participates in initiation and elongation during chromosome replication
BAMY_13835	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
BAMY_13835	COG1017	nitric oxide dioxygenase activity
BAMY_13845	COG0693	protein deglycase activity
BAMY_13860	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
BAMY_13865	COG1378	Sugar-specific transcriptional regulator TrmB
BAMY_13885	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
BAMY_13890	COG0454	-acetyltransferase
BAMY_13895	COG0517	IMP dehydrogenase activity
BAMY_13900	COG0123	including yeast histone deacetylase and acetoin utilization protein
BAMY_13905	COG1360	Flagellar Motor Protein
BAMY_13910	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
BAMY_13915	COG1609	Transcriptional regulator
BAMY_13920	COG1605	Chorismate mutase
BAMY_13920	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
BAMY_13925	COG3118	belongs to the thioredoxin family
BAMY_13930	COG4980	gas vesicle protein
BAMY_13935	COG4768	protein containing a divergent version of the methyl-accepting chemotaxis-like domain
BAMY_13945	COG1674	ftsk spoiiie
BAMY_13950	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BAMY_13960	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BAMY_13970	COG1363	Peptidase, m42
BAMY_13975	COG5584	Small secreted protein
BAMY_13980	COG0281	malic enzyme
BAMY_13985	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BAMY_14000	COG0510	thiamine kinase activity
BAMY_14005	COG1597	lipid kinase activity
BAMY_14015	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
BAMY_14020	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
BAMY_14025	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BAMY_14030	COG2252	PERMEase
BAMY_14035	COG4473	ABC transporter
BAMY_14040	COG1131	(ABC) transporter
BAMY_14045	COG1349	DNA-binding transcription factor activity
BAMY_14050	COG1187	pseudouridine synthase activity
BAMY_14055	COG2244	polysaccharide biosynthetic process
BAMY_14060	COG2081	HI0933 family
BAMY_14065	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
BAMY_14095	COG1486	melibiose metabolic process
BAMY_14105	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BAMY_14120	COG1366	Belongs to the anti-sigma-factor antagonist family
BAMY_14120	COG2202	Pas domain
BAMY_14125	COG2814	Major facilitator Superfamily
BAMY_14130	COG5522	Integral membrane protein (intg_mem_TP0381)
BAMY_14135	COG0577	efflux transmembrane transporter activity
BAMY_14140	COG1136	(ABC) transporter
BAMY_14145	COG2205	protein histidine kinase activity
BAMY_14150	COG0745	RESPONSE REGULATOR receiver
BAMY_14155	COG0577	efflux transmembrane transporter activity
BAMY_14160	COG1136	(ABC) transporter
BAMY_14180	COG1131	(ABC) transporter
BAMY_14185	COG1725	Transcriptional regulator
BAMY_14200	COG0477	Major facilitator Superfamily
BAMY_14205	COG1242	4 iron, 4 sulfur cluster binding
BAMY_14210	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
BAMY_14220	COG0584	glycerophosphoryl diester phosphodiesterase
BAMY_14230	COG2267	carboxylic ester hydrolase activity
BAMY_14235	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
BAMY_14240	COG1113	amino acid transport
BAMY_14245	COG0367	asparagine synthase
BAMY_14265	COG1506	peptidase
BAMY_14270	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
BAMY_14275	COG1116	anion transmembrane transporter activity
BAMY_14280	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BAMY_14285	COG0494	nUDIX hydrolase
BAMY_14290	COG4824	toxin secretion phage lysis holin
BAMY_14295	COG0783	Belongs to the Dps family
BAMY_14320	COG0288	reversible hydration of carbon dioxide
BAMY_14330	COG1271	oxidase subunit
BAMY_14335	COG1294	oxidase, subunit
BAMY_14345	COG4948	Mandelate Racemase Muconate Lactonizing
BAMY_14355	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
BAMY_14360	COG0596	Alpha beta hydrolase
BAMY_14370	COG1169	isochorismate synthase
BAMY_14375	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
BAMY_14380	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
BAMY_14505	COG3859	Proton-coupled thiamine transporter YuaJ
BAMY_14510	COG2268	Band 7 protein
BAMY_14515	COG1585	Membrane protein implicated in regulation of membrane protease activity
BAMY_14520	COG2318	DinB family
BAMY_14530	COG1454	alcohol dehydrogenase
BAMY_14540	COG1510	regulation of RNA biosynthetic process
BAMY_14550	COG0569	domain protein
BAMY_14555	COG1705	Flagellar rod assembly protein muramidase FlgJ
BAMY_14560	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
BAMY_14560	COG1017	nitric oxide dioxygenase activity
BAMY_14585	COG0457	Tetratricopeptide repeat
BAMY_14610	COG0628	permease
BAMY_14615	COG0673	inositol 2-dehydrogenase activity
BAMY_14620	COG0693	protein deglycase activity
BAMY_14625	COG0840	transmembrane signaling receptor activity
BAMY_14630	COG0840	transmembrane signaling receptor activity
BAMY_14635	COG0840	transmembrane signaling receptor activity
BAMY_14640	COG0840	transmembrane signaling receptor activity
BAMY_14655	COG2070	2-Nitropropane dioxygenase
BAMY_14660	COG0432	Pfam Uncharacterised protein family UPF0047
BAMY_14665	COG0366	Alpha amylase catalytic
BAMY_14670	COG1253	flavin adenine dinucleotide binding
BAMY_14675	COG2738	Putative neutral zinc metallopeptidase
BAMY_14690	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
BAMY_14715	COG1335	isochorismatase
BAMY_14720	COG1979	alcohol dehydrogenase
BAMY_14725	COG1979	alcohol dehydrogenase
BAMY_14730	COG2155	Conserved Protein
BAMY_14735	COG1098	S1 RNA binding domain
BAMY_14740	COG0436	Aminotransferase
BAMY_14745	COG1522	sequence-specific DNA binding
BAMY_14750	COG2267	carboxylic ester hydrolase activity
BAMY_14760	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
BAMY_14765	COG2205	protein histidine kinase activity
BAMY_14775	COG5018	Exonuclease
BAMY_14780	COG2814	Major facilitator Superfamily
BAMY_14785	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BAMY_14790	COG3011	Protein conserved in bacteria
BAMY_14800	COG3290	protein histidine kinase activity
BAMY_14805	COG4565	transcriptional regulatory protein
BAMY_14835	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
BAMY_14835	COG2111	Na H antiporter
BAMY_14840	COG2111	Na H antiporter
BAMY_14845	COG1006	Multisubunit Na H antiporter MnhC subunit
BAMY_14850	COG0651	ATP synthesis coupled electron transport
BAMY_14855	COG1863	multisubunit Na H antiporter MnhE subunit
BAMY_14860	COG2212	antiporter activity
BAMY_14865	COG1320	monovalent cation:proton antiporter activity
BAMY_14870	COG2050	protein possibly involved in aromatic compounds catabolism
BAMY_14875	COG2197	response regulator
BAMY_14900	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
BAMY_14905	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
BAMY_14910	COG1335	isochorismatase
BAMY_14915	COG5506	Protein of unknown function (DUF1694)
BAMY_14930	COG0628	permease
BAMY_14940	COG1418	mRNA catabolic process
BAMY_14945	COG1028	Short-chain dehydrogenase reductase Sdr
BAMY_14955	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
BAMY_14955	COG2508	Transcriptional regulator
BAMY_14960	COG0686	Belongs to the AlaDH PNT family
BAMY_14965	COG5634	Uncharacterized conserved protein (DUF2278)
BAMY_14970	COG3251	PFAM MbtH domain protein
BAMY_14975	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BAMY_14980	COG1535	isochorismatase
BAMY_14980	COG3433	isochorismatase activity
BAMY_14985	COG1021	2,3-dihydroxybenzoate-AMP ligase
BAMY_14990	COG1169	isochorismate synthase
BAMY_14995	COG1028	Short-chain dehydrogenase reductase Sdr
BAMY_15000	COG2819	hydrolase of the alpha beta superfamily
BAMY_15005	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
BAMY_15010	COG1268	BioY protein
BAMY_15015	COG2056	Na+-H+ antiporter family
BAMY_15025	COG1963	PFAM Acid phosphatase vanadium-dependent haloperoxidase related
BAMY_15030	COG3584	3D domain protein
BAMY_15040	COG1252	NADH dehydrogenase
BAMY_15065	COG1131	(ABC) transporter
BAMY_15090	COG3967	Belongs to the short-chain dehydrogenases reductases (SDR) family
BAMY_15095	COG0316	Belongs to the HesB IscA family
BAMY_15105	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
BAMY_15115	COG1252	NADH dehydrogenase
BAMY_15120	COG4837	Protein of unknown function (DUF1462)
BAMY_15125	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
BAMY_15130	COG4946	Tricorn protease homolog
BAMY_15130	COG1506	peptidase
BAMY_15130	COG0823	Involved in the tonB-independent uptake of proteins
BAMY_15140	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
BAMY_15145	COG0460	homoserine dehydrogenase
BAMY_15150	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
BAMY_15155	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
BAMY_15160	COG0647	UMP catabolic process
BAMY_15165	COG2445	Protein of unknown function DUF86
BAMY_15170	COG4470	Protein conserved in bacteria
BAMY_15180	COG0739	heme binding
BAMY_15190	COG0737	Belongs to the 5'-nucleotidase family
BAMY_15195	COG0730	response to heat
BAMY_15200	COG1801	Protein of unknown function DUF72
BAMY_15215	COG2508	Transcriptional regulator
BAMY_15220	COG0338	D12 class N6 adenine-specific DNA methyltransferase
BAMY_15235	COG2814	Major facilitator Superfamily
BAMY_15240	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
BAMY_15245	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BAMY_15250	COG2356	endonuclease I
BAMY_15255	COG3842	ATPase activity
BAMY_15260	COG2188	Transcriptional regulator
BAMY_15265	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BAMY_15270	COG0395	ABC-type sugar transport system, permease component
BAMY_15275	COG1175	transmembrane transport
BAMY_15280	COG1653	transport
BAMY_15285	COG2222	sugar isomerase
BAMY_15290	COG0789	Transcriptional regulator
BAMY_15300	COG0322	excinuclease ABC activity
BAMY_15305	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BAMY_15310	COG2226	methyltransferase
BAMY_15320	COG3409	Peptidoglycan-binding domain 1 protein
BAMY_15325	COG0719	Fe-S assembly protein
BAMY_15330	COG0822	iron-sulfur transferase activity
BAMY_15335	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
BAMY_15340	COG0719	Fe-S assembly protein
BAMY_15345	COG0396	ATPase activity
BAMY_15350	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
BAMY_15355	COG1464	Belongs to the NlpA lipoprotein family
BAMY_15360	COG2011	ABC-type metal ion transport system permease component
BAMY_15365	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
BAMY_15375	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BAMY_15380	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
BAMY_15395	COG1393	Belongs to the ArsC family
BAMY_15400	COG1960	acyl-CoA dehydrogenase activity
BAMY_15405	COG0183	Belongs to the thiolase family
BAMY_15410	COG1024	Enoyl-CoA hydratase
BAMY_15410	COG1250	3-hydroxyacyl-CoA dehydrogenase
BAMY_15425	COG5577	PFAM Coat F domain
BAMY_15430	COG1846	Transcriptional regulator
BAMY_15435	COG0477	Major facilitator Superfamily
BAMY_15440	COG0583	DNA-binding transcription factor activity
BAMY_15460	COG1120	ATPase activity
BAMY_15475	COG1028	Short-chain dehydrogenase reductase Sdr
BAMY_15480	COG0783	Belongs to the Dps family
BAMY_15485	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BAMY_15490	COG0745	RESPONSE REGULATOR receiver
BAMY_15495	COG2770	Histidine kinase
BAMY_15495	COG2205	protein histidine kinase activity
BAMY_15500	COG1309	transcriptional regulator
BAMY_15505	COG0114	fumarate hydratase activity
BAMY_15515	COG0697	spore germination
BAMY_15520	COG0814	amino acid
BAMY_15530	COG2197	response regulator
BAMY_15535	COG4585	Histidine kinase
BAMY_15540	COG4758	membrane
BAMY_15545	COG3595	metallopeptidase activity
BAMY_15550	COG1842	Phage shock protein A
BAMY_15555	COG4758	membrane
BAMY_15560	COG2814	Major facilitator Superfamily
BAMY_15565	COG2096	Adenosyltransferase
BAMY_15570	COG1120	ATPase activity
BAMY_15575	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BAMY_15580	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
BAMY_15585	COG1028	Short-chain dehydrogenase reductase Sdr
BAMY_15590	COG3386	PFAM SMP-30 Gluconolaconase
BAMY_15595	COG2205	protein histidine kinase activity
BAMY_15600	COG0745	RESPONSE REGULATOR receiver
BAMY_15610	COG1191	sigma factor activity
BAMY_15620	COG2140	Oxalate decarboxylase
BAMY_15630	COG1120	ATPase activity
BAMY_15635	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BAMY_15640	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BAMY_15645	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
BAMY_15650	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
BAMY_15655	COG0531	amino acid
BAMY_15665	COG1988	membrane-bound metal-dependent
BAMY_15670	COG1368	sulfuric ester hydrolase activity
BAMY_15675	COG1910	domain protein
BAMY_15680	COG0725	ABC transporter, periplasmic molybdate-binding protein
BAMY_15685	COG4149	molybdate abc transporter
BAMY_15690	COG2197	response regulator
BAMY_15695	COG3850	Histidine kinase
BAMY_15700	COG1131	(ABC) transporter
BAMY_15710	COG0842	Transport permease protein
BAMY_15715	COG0656	L-ascorbic acid biosynthetic process
BAMY_15740	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
BAMY_15745	COG3973	AAA domain
BAMY_15750	COG2860	membrane
BAMY_15760	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
BAMY_15765	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BAMY_15770	COG2217	Heavy metal translocating P-type atpase
BAMY_15775	COG2217	Heavy metal translocating P-type atpase
BAMY_15780	COG2608	mercury ion transmembrane transporter activity
BAMY_15785	COG1937	Protein conserved in bacteria
BAMY_15790	COG0673	inositol 2-dehydrogenase activity
BAMY_15800	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BAMY_15805	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
BAMY_15810	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BAMY_15815	COG1126	abc transporter atp-binding protein
BAMY_15820	COG0765	amino acid transport
BAMY_15825	COG0765	amino acid transport
BAMY_15830	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BAMY_15835	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BAMY_15840	COG0454	-acetyltransferase
BAMY_15845	COG0583	DNA-binding transcription factor activity
BAMY_15850	COG1028	Short-chain dehydrogenase reductase Sdr
BAMY_15855	COG2732	(Barnase) inhibitor
BAMY_15880	COG0557	exoribonuclease II activity
BAMY_15885	COG1647	Serine aminopeptidase, S33
BAMY_15890	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
BAMY_15895	COG1476	TRANSCRIPTIONal
BAMY_15900	COG1396	sequence-specific DNA binding
BAMY_15905	COG1396	sequence-specific DNA binding
BAMY_15910	COG1733	regulation of RNA biosynthetic process
BAMY_15940	COG1174	glycine betaine transport
BAMY_15945	COG1732	Glycine betaine
BAMY_15950	COG1174	glycine betaine transport
BAMY_15955	COG0517	IMP dehydrogenase activity
BAMY_15955	COG1125	glycine betaine transport
BAMY_15960	COG1510	regulation of RNA biosynthetic process
BAMY_15965	COG1174	glycine betaine transport
BAMY_15970	COG1732	Glycine betaine
BAMY_15975	COG1174	glycine betaine transport
BAMY_15980	COG1125	glycine betaine transport
BAMY_15980	COG0517	IMP dehydrogenase activity
BAMY_15985	COG1510	regulation of RNA biosynthetic process
BAMY_15990	COG2095	MarC family integral membrane protein
BAMY_15995	COG3064	Membrane
BAMY_16000	COG4640	response to antibiotic
BAMY_16005	COG0456	acetyltransferase
BAMY_16055	COG0126	phosphoglycerate kinase activity
BAMY_16065	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
BAMY_16070	COG2390	Transcriptional regulator
BAMY_16075	COG2814	Major facilitator Superfamily
BAMY_16080	COG1609	Transcriptional regulator
BAMY_16085	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BAMY_16095	COG0583	DNA-binding transcription factor activity
BAMY_16100	COG0697	spore germination
BAMY_16105	COG1113	amino acid transport
BAMY_16115	COG1609	Transcriptional regulator
BAMY_16125	COG0561	phosphatase activity
BAMY_16130	COG1737	Transcriptional regulator
BAMY_16135	COG1070	Carbohydrate kinase
BAMY_16160	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BAMY_16165	COG2186	Transcriptional regulator
BAMY_16170	COG1620	l-lactate permease
BAMY_16175	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
BAMY_16185	COG5039	Polysaccharide pyruvyl transferase
BAMY_16190	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
BAMY_16195	COG0110	maltose O-acetyltransferase activity
BAMY_16200	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
BAMY_16205	COG2244	polysaccharide biosynthetic process
BAMY_16210	COG1216	Glycosyl transferase, family 2
BAMY_16215	COG5039	Polysaccharide pyruvyl transferase
BAMY_16220	COG1216	Glycosyl transferase, family 2
BAMY_16230	COG0438	transferase activity, transferring glycosyl groups
BAMY_16235	COG1215	transferase activity, transferring glycosyl groups
BAMY_16240	COG0438	transferase activity, transferring glycosyl groups
BAMY_16245	COG1086	Polysaccharide biosynthesis protein
BAMY_16250	COG0489	protein tyrosine kinase activity
BAMY_16255	COG3944	biosynthesis protein
BAMY_16260	COG1396	sequence-specific DNA binding
BAMY_16265	COG2272	Belongs to the type-B carboxylesterase lipase family
BAMY_16275	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
BAMY_16280	COG2364	Membrane
BAMY_16285	COG0456	acetyltransferase
BAMY_16290	COG3479	Phenolic acid decarboxylase
BAMY_16335	COG2223	nitrite transmembrane transporter activity
BAMY_16340	COG1609	Transcriptional regulator
BAMY_16350	COG0583	DNA-binding transcription factor activity
BAMY_16355	COG2828	Protein conserved in bacteria
BAMY_16360	COG2814	Major facilitator Superfamily
BAMY_16360	COG0477	Major facilitator Superfamily
BAMY_16365	COG1611	Belongs to the LOG family
BAMY_16370	COG1694	Mazg nucleotide pyrophosphohydrolase
BAMY_16375	COG0659	secondary active sulfate transmembrane transporter activity
BAMY_16380	COG0288	reversible hydration of carbon dioxide
BAMY_16385	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BAMY_16390	COG4290	ribonuclease
BAMY_16395	COG2162	N-hydroxyarylamine O-acetyltransferase activity
BAMY_16400	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
BAMY_16410	COG0391	Required for morphogenesis under gluconeogenic growth conditions
BAMY_16425	COG0492	ferredoxin-NADP+ reductase activity
BAMY_16430	COG3883	PFAM NLP P60 protein
BAMY_16430	COG0791	NLP P60 protein
BAMY_16435	COG0457	Tetratricopeptide repeat
BAMY_16440	COG5002	protein histidine kinase activity
BAMY_16445	COG0745	RESPONSE REGULATOR receiver
BAMY_16455	COG1132	(ABC) transporter
BAMY_16460	COG0140	phosphoribosyl-ATP diphosphatase activity
BAMY_16460	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
BAMY_16485	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
BAMY_16500	COG4990	cell redox homeostasis
BAMY_16505	COG0110	maltose O-acetyltransferase activity
BAMY_16525	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
BAMY_16540	COG1309	transcriptional regulator
BAMY_16545	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
BAMY_16550	COG1950	PFAM Membrane protein of
BAMY_16555	COG1983	PspC domain protein
BAMY_16560	COG3595	metallopeptidase activity
BAMY_16575	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
BAMY_16585	COG4897	Protein conserved in bacteria
BAMY_16590	COG0574	Belongs to the PEP-utilizing enzyme family
BAMY_16590	COG3848	Pyruvate phosphate dikinase
BAMY_16595	COG1309	transcriptional regulator
BAMY_16600	COG2814	Major facilitator Superfamily
BAMY_16620	COG3328	transposase activity
BAMY_16635	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BAMY_16645	COG0793	Belongs to the peptidase S41A family
BAMY_16645	COG3409	Peptidoglycan-binding domain 1 protein
BAMY_16650	COG3420	alginic acid biosynthetic process
BAMY_16655	COG2177	Part of the ABC transporter FtsEX involved in
BAMY_16660	COG2884	Cell division ATP-binding protein ftsE
BAMY_16665	COG2010	Cytochrome c
BAMY_16670	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BAMY_16675	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
BAMY_16685	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
BAMY_16700	COG1516	flagellar protein fliS
BAMY_16705	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
BAMY_16710	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BAMY_16730	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BAMY_16735	COG1256	bacterial-type flagellum assembly
BAMY_16735	COG4786	Flagellar basal body rod
BAMY_16740	COG3418	PFAM FlgN family protein
BAMY_16745	COG2747	anti-sigma28 factor FlgM
BAMY_16755	COG1040	competence protein
BAMY_16765	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
BAMY_16770	COG1307	EDD domain protein, DegV family
BAMY_16775	COG2197	response regulator
BAMY_16780	COG4585	Histidine kinase
BAMY_16785	COG1739	Uncharacterized protein family UPF0029
BAMY_16790	COG1316	TRANSCRIPTIONal
BAMY_16795	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BAMY_16800	COG0438	transferase activity, transferring glycosyl groups
BAMY_16805	COG1215	transferase activity, transferring glycosyl groups
BAMY_16810	COG3206	protein involved in exopolysaccharide biosynthesis
BAMY_16815	COG3307	-O-antigen
BAMY_16820	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
BAMY_16825	COG0438	transferase activity, transferring glycosyl groups
BAMY_16825	COG0297	glycogen (starch) synthase activity
BAMY_16830	COG2244	polysaccharide biosynthetic process
BAMY_16840	COG2247	cell wall binding repeat
BAMY_16840	COG0860	N-Acetylmuramoyl-L-alanine amidase
BAMY_16845	COG2247	cell wall binding repeat
BAMY_16845	COG2385	sporulation resulting in formation of a cellular spore
BAMY_16855	COG1316	TRANSCRIPTIONal
BAMY_16860	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
BAMY_16865	COG1210	Utp--glucose-1-phosphate uridylyltransferase
BAMY_16870	COG1134	teichoic acid transport
BAMY_16875	COG1682	transport, permease protein
BAMY_16880	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
BAMY_16890	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
BAMY_16895	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
BAMY_16900	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
BAMY_16905	COG4193	domain, Protein
BAMY_16910	COG1482	cell wall glycoprotein biosynthetic process
BAMY_16915	COG0697	spore germination
BAMY_16920	COG0814	amino acid
BAMY_16930	COG1215	transferase activity, transferring glycosyl groups
BAMY_16935	COG2814	Major facilitator Superfamily
BAMY_16940	COG1316	TRANSCRIPTIONal
BAMY_16945	COG0561	phosphatase activity
BAMY_16950	COG2433	Pfam Transposase IS66
BAMY_16955	COG0791	NLP P60 protein
BAMY_16960	COG2843	Capsule synthesis protein
BAMY_16970	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
BAMY_16975	COG0697	spore germination
BAMY_16980	COG0814	amino acid
BAMY_16990	COG1609	Transcriptional regulator
BAMY_16995	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BAMY_17005	COG1129	ABC transporter
BAMY_17010	COG1172	Belongs to the binding-protein-dependent transport system permease family
BAMY_17015	COG1879	ABC-type sugar transport system periplasmic component
BAMY_17020	COG3103	Sh3 type 3 domain protein
BAMY_17025	COG2249	NAD(P)H dehydrogenase (quinone) activity
BAMY_17030	COG3527	Alpha-acetolactate decarboxylase
BAMY_17035	COG0028	Belongs to the TPP enzyme family
BAMY_17040	COG0583	DNA-binding transcription factor activity
BAMY_17045	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
BAMY_17060	COG5337	Spore coat protein CotH
BAMY_17070	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
BAMY_17080	COG0405	Gamma-glutamyltransferase
BAMY_17085	COG1522	sequence-specific DNA binding
BAMY_17090	COG2059	Chromate
BAMY_17095	COG2059	Chromate
BAMY_17105	COG0655	NAD(P)H dehydrogenase (quinone) activity
BAMY_17110	COG0583	DNA-binding transcription factor activity
BAMY_17120	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
BAMY_17125	COG4464	protein tyrosine phosphatase activity
BAMY_17130	COG0489	protein tyrosine kinase activity
BAMY_17135	COG3944	biosynthesis protein
BAMY_17140	COG4715	Zinc finger, swim domain protein
BAMY_17145	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
BAMY_17150	COG0561	phosphatase activity
BAMY_17155	COG1349	DNA-binding transcription factor activity
BAMY_17160	COG0629	single-stranded DNA binding
BAMY_17185	COG0457	Tetratricopeptide repeat
BAMY_17190	COG4786	Flagellar basal body rod
BAMY_17195	COG4786	Flagellar basal body rod
BAMY_17200	COG1077	Cell shape determining protein MreB Mrl
BAMY_17205	COG1609	Transcriptional regulator
BAMY_17210	COG1846	Transcriptional regulator
BAMY_17215	COG2814	Major facilitator Superfamily
BAMY_17220	COG1953	Uracil, thiamine, allantoin
BAMY_17225	COG0477	Major facilitator Superfamily
BAMY_17230	COG1335	isochorismatase
BAMY_17235	COG0004	ammonium transporteR
BAMY_17240	COG0347	Belongs to the P(II) protein family
BAMY_17245	COG0772	Belongs to the SEDS family
BAMY_17250	COG0671	phosphoesterase, PA-phosphatase related
BAMY_17260	COG0739	heme binding
BAMY_17265	COG1247	-acetyltransferase
BAMY_17280	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BAMY_17290	COG0726	polysaccharide deacetylase
BAMY_17300	COG1959	2 iron, 2 sulfur cluster binding
BAMY_17315	COG0831	urea catabolic process
BAMY_17320	COG3237	CsbD-like
BAMY_17325	COG1994	Peptidase M50
BAMY_17330	COG0457	Tetratricopeptide repeat
BAMY_17340	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
BAMY_17345	COG2304	oxidoreductase activity
BAMY_17350	COG2304	oxidoreductase activity
BAMY_17355	COG2385	sporulation resulting in formation of a cellular spore
BAMY_17360	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
BAMY_17370	COG4836	Membrane
BAMY_17410	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
BAMY_17440	COG0698	ribose 5-phosphate isomerase
BAMY_17445	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
BAMY_17455	COG0009	L-threonylcarbamoyladenylate synthase
BAMY_17460	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
BAMY_17480	COG2890	protein-(glutamine-N5) methyltransferase activity
BAMY_17485	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
BAMY_17490	COG0346	lactoylglutathione lyase activity
BAMY_17495	COG0789	Transcriptional regulator
BAMY_17500	COG0679	Auxin Efflux Carrier
BAMY_17505	COG0281	malic enzyme
BAMY_17515	COG0254	rRNA binding
BAMY_17520	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
BAMY_17525	COG1494	fructose-1,6-bisphosphatase
BAMY_17530	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
BAMY_17540	COG0191	fructose-bisphosphate aldolase activity
BAMY_17545	COG2204	response regulator
BAMY_17550	COG4821	SIS domain
BAMY_17565	COG0247	lactate metabolic process
BAMY_17565	COG2181	nitrate reductase activity
BAMY_17570	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BAMY_17585	COG1132	(ABC) transporter
BAMY_17590	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BAMY_17600	COG2181	nitrate reductase activity
BAMY_17605	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
BAMY_17610	COG1140	nitrate reductase beta subunit
BAMY_17615	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
BAMY_17620	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BAMY_17630	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BAMY_17635	COG2223	nitrite transmembrane transporter activity
BAMY_17645	COG4506	Protein conserved in bacteria
BAMY_17650	COG0457	Tetratricopeptide repeat
BAMY_17680	COG0018	arginyl-trna synthetase
BAMY_17685	COG0010	Belongs to the arginase family
BAMY_17690	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
BAMY_17695	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BAMY_17710	COG1994	Peptidase M50
BAMY_17715	COG1942	4-Oxalocrotonate Tautomerase
BAMY_17720	COG1846	Transcriptional regulator
BAMY_17730	COG0531	amino acid
BAMY_17735	COG3465	dGTPase activity
BAMY_17740	COG1078	dGTPase activity
BAMY_17755	COG1695	Transcriptional regulator
BAMY_17765	COG1131	(ABC) transporter
BAMY_17770	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
BAMY_17800	COG0583	DNA-binding transcription factor activity
BAMY_17810	COG0280	phosphate acetyltransferase
BAMY_17820	COG1028	Short-chain dehydrogenase reductase Sdr
BAMY_17825	COG0436	Aminotransferase
BAMY_17855	COG2814	Major facilitator Superfamily
BAMY_17860	COG2814	Major facilitator Superfamily
BAMY_17865	COG0833	amino acid
BAMY_17870	COG4187	Peptidase family M20/M25/M40
BAMY_17875	COG1012	belongs to the aldehyde dehydrogenase family
BAMY_17880	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
BAMY_17890	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
BAMY_17895	COG1091	dTDP-4-dehydrorhamnose reductase activity
BAMY_17900	COG1088	dTDP-glucose 4,6-dehydratase activity
BAMY_17905	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
BAMY_17910	COG3980	spore coat polysaccharide biosynthesis protein
BAMY_17915	COG1861	Spore coat polysaccharide biosynthesis protein F CMP-KDO synthetase
BAMY_17920	COG2089	acid synthase
BAMY_17925	COG0456	acetyltransferase
BAMY_17930	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
BAMY_17935	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
BAMY_17940	COG0463	Glycosyl transferase, family 2
BAMY_17950	COG2363	Small membrane protein
BAMY_17955	COG2233	PERMEase
BAMY_17970	COG1216	Glycosyl transferase, family 2
BAMY_17985	COG1695	Transcriptional regulator
BAMY_17990	COG0351	phosphomethylpyrimidine kinase
BAMY_18000	COG1621	beta-fructofuranosidase activity
BAMY_18005	COG1263	PTS System
BAMY_18005	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BAMY_18010	COG3711	transcriptional antiterminator
BAMY_18020	COG1404	Belongs to the peptidase S8 family
BAMY_18025	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BAMY_18030	COG0778	Nitroreductase
BAMY_18035	COG0772	Belongs to the SEDS family
BAMY_18040	COG0454	-acetyltransferase
BAMY_18060	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
BAMY_18065	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
BAMY_18070	COG2261	transglycosylase associated protein
BAMY_18075	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
BAMY_18080	COG2246	polysaccharide biosynthetic process
BAMY_18085	COG1309	transcriptional regulator
BAMY_18105	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
BAMY_18110	COG2837	iron assimilation
BAMY_18115	COG2822	iron ion transport
BAMY_18130	COG0583	DNA-binding transcription factor activity
BAMY_18140	COG1346	cytolysis
BAMY_18145	COG4895	conserved protein (DUF2196)
BAMY_18150	COG0789	Transcriptional regulator
BAMY_18155	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
BAMY_18160	COG0346	lactoylglutathione lyase activity
BAMY_18165	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BAMY_18170	COG1404	Belongs to the peptidase S8 family
BAMY_18175	COG1442	glycosyl transferase family 8
BAMY_18180	COG2357	RelA SpoT domain protein
BAMY_18185	COG1575	Belongs to the MenA family. Type 1 subfamily
BAMY_18200	COG1696	Membrane protein involved in D-alanine export
BAMY_18210	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
BAMY_18215	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
BAMY_18220	COG1486	melibiose metabolic process
BAMY_18225	COG1447	Phosphotransferase system cellobiose-specific component IIA
BAMY_18230	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BAMY_18235	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BAMY_18240	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BAMY_18240	COG3711	transcriptional antiterminator
BAMY_18250	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BAMY_18255	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BAMY_18265	COG0640	Transcriptional regulator
BAMY_18270	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
BAMY_18275	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BAMY_18280	COG1447	Phosphotransferase system cellobiose-specific component IIA
BAMY_18285	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BAMY_18290	COG2723	6-phospho-beta-galactosidase activity
BAMY_18295	COG1940	carbohydrate kinase activity
BAMY_18300	COG1482	cell wall glycoprotein biosynthetic process
BAMY_18310	COG0753	catalase activity
BAMY_18315	COG3049	Linear amide C-N hydrolases, choloylglycine hydrolase family
BAMY_18320	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
BAMY_18325	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
BAMY_18330	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
BAMY_18335	COG4988	ABC transporter
BAMY_18340	COG1294	oxidase, subunit
BAMY_18345	COG1271	oxidase subunit
BAMY_18350	COG3493	citrate carrier protein
BAMY_18355	COG0726	polysaccharide deacetylase
BAMY_18360	COG3842	ATPase activity
BAMY_18365	COG2508	Transcriptional regulator
BAMY_18370	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BAMY_18380	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
BAMY_18390	COG4894	glucomannan catabolic process
BAMY_18395	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
BAMY_18400	COG0500	methyltransferase
BAMY_18405	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
BAMY_18420	COG0753	catalase activity
BAMY_18420	COG0693	protein deglycase activity
BAMY_18425	COG2851	Citrate transporter
BAMY_18430	COG2273	Hydrolase Family 16
BAMY_18440	COG2270	Major facilitator Superfamily
BAMY_18445	COG0513	Belongs to the DEAD box helicase family
BAMY_18535	COG0697	spore germination
BAMY_18540	COG0589	response to stress
BAMY_18555	COG0494	nUDIX hydrolase
BAMY_18560	COG3507	Belongs to the glycosyl hydrolase 43 family
BAMY_18585	COG0010	Belongs to the arginase family
BAMY_18590	COG0833	amino acid
BAMY_18595	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
BAMY_18600	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
BAMY_18610	COG2390	Transcriptional regulator
BAMY_18615	COG0561	phosphatase activity
BAMY_18645	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
BAMY_18650	COG5294	Protein conserved in bacteria
BAMY_18655	COG0577	efflux transmembrane transporter activity
BAMY_18660	COG1136	(ABC) transporter
BAMY_18665	COG2205	protein histidine kinase activity
BAMY_18670	COG0745	RESPONSE REGULATOR receiver
BAMY_18685	COG1082	Xylose isomerase domain protein TIM barrel
BAMY_18695	COG2814	Major facilitator Superfamily
BAMY_18725	COG1349	DNA-binding transcription factor activity
BAMY_18730	COG0667	Aldo Keto reductase
BAMY_18735	COG2814	Major facilitator Superfamily
BAMY_18750	COG1028	Short-chain dehydrogenase reductase Sdr
BAMY_18755	COG2197	response regulator
BAMY_18760	COG4585	Histidine kinase
BAMY_18765	COG3239	Fatty acid desaturase
BAMY_18775	COG1309	transcriptional regulator
BAMY_18780	COG1012	belongs to the aldehyde dehydrogenase family
BAMY_18785	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BAMY_18795	COG0640	Transcriptional regulator
BAMY_18800	COG2814	Major facilitator Superfamily
BAMY_18805	COG1714	RDD family
BAMY_18815	COG0450	alkyl hydroperoxide reductase
BAMY_18820	COG3634	alkyl hydroperoxide reductase activity
BAMY_18825	COG1113	amino acid transport
BAMY_18835	COG2080	2 iron, 2 sulfur cluster binding
BAMY_18850	COG2068	MobA-Related Protein
BAMY_18855	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
BAMY_18880	COG0232	Belongs to the dGTPase family. Type 2 subfamily
BAMY_18910	COG3863	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
BAMY_18915	COG0667	Aldo Keto reductase
BAMY_18920	COG0456	acetyltransferase
BAMY_18925	COG0457	Tetratricopeptide repeat
BAMY_18930	COG0010	Belongs to the arginase family
BAMY_18935	COG0833	amino acid
BAMY_18940	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
BAMY_18945	COG3829	transcription factor binding
BAMY_18955	COG0488	(ABC) transporter
BAMY_18970	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
BAMY_18975	COG3850	Histidine kinase
BAMY_18975	COG5002	protein histidine kinase activity
BAMY_18985	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BAMY_18990	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
BAMY_18995	COG4853	Protein conserved in bacteria
BAMY_19000	COG4863	YycH protein
BAMY_19005	COG5002	protein histidine kinase activity
BAMY_19010	COG0745	RESPONSE REGULATOR receiver
BAMY_19045	COG0346	lactoylglutathione lyase activity
BAMY_19050	COG0305	Participates in initiation and elongation during chromosome replication
BAMY_19065	COG3093	addiction module antidote protein HigA
BAMY_19075	COG0297	glycogen (starch) synthase activity
BAMY_19085	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
BAMY_19090	COG0438	transferase activity, transferring glycosyl groups
BAMY_19110	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
BAMY_19115	COG4241	membrane
BAMY_19120	COG5577	PFAM Coat F domain
BAMY_19125	COG1733	regulation of RNA biosynthetic process
BAMY_19145	COG0697	spore germination
BAMY_19150	COG1621	beta-fructofuranosidase activity
BAMY_19155	COG1621	beta-fructofuranosidase activity
BAMY_19160	COG1802	Transcriptional regulator
BAMY_19165	COG2318	DinB family
BAMY_19170	COG2211	Major facilitator Superfamily
BAMY_19180	COG0778	Nitroreductase
BAMY_19185	COG1846	Transcriptional regulator
BAMY_19190	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BAMY_19195	COG1846	Transcriptional regulator
BAMY_19210	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
BAMY_19215	COG0583	DNA-binding transcription factor activity
BAMY_19220	COG1028	Short-chain dehydrogenase reductase Sdr
BAMY_19240	COG1404	Belongs to the peptidase S8 family
BAMY_19245	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BAMY_19250	COG0697	spore germination
BAMY_19255	COG4978	Transcriptional regulator
BAMY_19255	COG0789	Transcriptional regulator
BAMY_19260	COG1811	Na channel or pump
BAMY_19265	COG1331	Highly conserved protein containing a thioredoxin domain
BAMY_19270	COG1266	CAAX protease self-immunity
BAMY_19275	COG0477	Major facilitator Superfamily
BAMY_19275	COG2814	Major facilitator Superfamily
BAMY_19280	COG0346	lactoylglutathione lyase activity
BAMY_19285	COG1609	Transcriptional regulator
BAMY_19290	COG0708	Exodeoxyribonuclease III
BAMY_19295	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
BAMY_19300	COG2169	Transcriptional regulator
BAMY_19310	COG0629	single-stranded DNA binding
BAMY_19320	COG0012	GTP binding
BAMY_19325	COG0243	molybdopterin cofactor binding
BAMY_19330	COG4481	Protein conserved in bacteria
BAMY_19335	COG3949	Membrane
BAMY_19350	COG1475	DNA binding
BAMY_19355	COG1192	Involved in chromosome partitioning
BAMY_19380	COG1847	R3H domain protein
BAMY_19385	COG0706	membrane insertase activity