locus-tag	class	description
FGF55_00010	COG0592	DNA-directed DNA polymerase activity
FGF55_00015	COG2501	S4 domain
FGF55_00030	COG0187	DNA topoisomerase II activity
FGF55_00035	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
FGF55_00070	COG0516	GMP reductase activity
FGF55_00070	COG0517	IMP dehydrogenase activity
FGF55_00075	COG1686	Belongs to the peptidase S11 family
FGF55_00095	COG1929	Belongs to the glycerate kinase type-1 family
FGF55_00105	COG1428	Deoxynucleoside kinase
FGF55_00110	COG1428	Deoxynucleoside kinase
FGF55_00115	COG3858	chitin binding
FGF55_00115	COG1388	LysM domain
FGF55_00120	COG1335	isochorismatase
FGF55_00125	COG0590	tRNA wobble adenosine to inosine editing
FGF55_00135	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
FGF55_00140	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
FGF55_00190	COG4915	5-bromo-4-chloroindolyl phosphate hydrolysis protein
FGF55_00195	COG3853	Toxic anion resistance protein (TelA)
FGF55_00200	COG1982	Orn Lys Arg decarboxylase major
FGF55_00210	COG3870	Protein conserved in bacteria
FGF55_00215	COG1728	Protein conserved in bacteria
FGF55_00220	COG0470	DNA polymerase III
FGF55_00225	COG1774	PSP1 C-terminal conserved region
FGF55_00235	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
FGF55_00245	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
FGF55_00250	COG2002	toxin-antitoxin pair type II binding
FGF55_00255	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FGF55_00255	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FGF55_00260	COG0084	hydrolase, TatD family'
FGF55_00265	COG3584	3D domain protein
FGF55_00265	COG3583	domain protein
FGF55_00270	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
FGF55_00275	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
FGF55_00285	COG4466	Protein conserved in bacteria
FGF55_00300	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
FGF55_00305	COG0251	oxidation-reduction process
FGF55_00320	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
FGF55_00340	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
FGF55_00345	COG2002	toxin-antitoxin pair type II binding
FGF55_00350	COG2244	polysaccharide biosynthetic process
FGF55_00355	COG3956	TIGRFAM MazG family protein
FGF55_00360	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
FGF55_00375	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
FGF55_00380	COG1098	S1 RNA binding domain
FGF55_00395	COG2208	phosphoserine phosphatase activity
FGF55_00400	COG2304	oxidoreductase activity
FGF55_00405	COG0515	serine threonine protein kinase
FGF55_00410	COG0037	tRNA processing
FGF55_00420	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
FGF55_00435	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
FGF55_00440	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
FGF55_00445	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
FGF55_00450	COG0512	Glutamine amidotransferase of anthranilate synthase
FGF55_00455	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
FGF55_00460	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
FGF55_00465	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
FGF55_00470	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
FGF55_00475	COG1396	sequence-specific DNA binding
FGF55_00480	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
FGF55_00485	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
FGF55_00565	COG4463	regulation of RNA biosynthetic process
FGF55_00570	COG3880	PFAM UvrB UvrC protein
FGF55_00580	COG0542	response to heat
FGF55_00585	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
FGF55_00590	COG1623	Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c- di-AMP acts as a signaling molecule that couples DNA integrity with progression of sporulation. The rise in c-di-AMP level generated by DisA while scanning the chromosome, operates as a positive signal that advances sporulation
FGF55_00595	COG4956	integral membrane protein (PIN domain superfamily)
FGF55_00615	COG1045	serine acetyltransferase
FGF55_00625	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
FGF55_00630	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
FGF55_00635	COG3688	RNA-binding protein containing a PIN domain
FGF55_00640	COG1595	DNA-templated transcription, initiation
FGF55_00645	COG0267	Belongs to the bacterial ribosomal protein bL33 family
FGF55_00650	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
FGF55_00655	COG0250	Participates in transcription elongation, termination and antitermination
FGF55_00660	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
FGF55_00675	COG0222	ribosome binding
FGF55_00680	COG2813	Specifically methylates the guanine in position
FGF55_00695	COG1358	cellular component organization or biogenesis
FGF55_00720	COG0596	Alpha beta hydrolase
FGF55_00725	COG0051	transcription antitermination factor activity, RNA binding
FGF55_00740	COG0089	rRNA binding
FGF55_00750	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
FGF55_00755	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
FGF55_00765	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
FGF55_00770	COG0255	Belongs to the universal ribosomal protein uL29 family
FGF55_00815	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
FGF55_00820	COG1841	ribosomal large subunit assembly
FGF55_00830	COG0201	protein transport
FGF55_00840	COG0024	Methionine aminopeptidase
FGF55_00850	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
FGF55_00855	COG0257	Belongs to the bacterial ribosomal protein bL36 family
FGF55_00880	COG1122	ATPase activity
FGF55_00885	COG1122	ATPase activity
FGF55_00890	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
FGF55_00910	COG2226	methyltransferase
FGF55_00915	COG2318	DinB family
FGF55_00925	COG0860	N-Acetylmuramoyl-L-alanine amidase
FGF55_00930	COG0489	protein tyrosine kinase activity
FGF55_00940	COG2194	sulfuric ester hydrolase activity
FGF55_00945	COG0726	polysaccharide deacetylase
FGF55_01005	COG0738	Major facilitator superfamily
FGF55_01010	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
FGF55_01025	COG0659	secondary active sulfate transmembrane transporter activity
FGF55_01030	COG0385	Bile acid
FGF55_01035	COG2819	hydrolase of the alpha beta superfamily
FGF55_01040	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FGF55_01045	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FGF55_01050	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
FGF55_01055	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
FGF55_01055	COG2207	Transcriptional regulator
FGF55_01060	COG3876	Protein conserved in bacteria
FGF55_01065	COG1472	Belongs to the glycosyl hydrolase 3 family
FGF55_01070	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
FGF55_01075	COG1263	PTS System
FGF55_01075	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FGF55_01085	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FGF55_01090	COG1683	Conserved Protein
FGF55_01120	COG1595	DNA-templated transcription, initiation
FGF55_01125	COG5662	AntiSigma factor
FGF55_01130	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
FGF55_01135	COG4856	YbbR-like protein
FGF55_01180	COG1346	cytolysis
FGF55_01185	COG1380	Effector of murein hydrolase LrgA
FGF55_01190	COG1846	Transcriptional regulator
FGF55_01195	COG1113	amino acid transport
FGF55_01200	COG1011	Hydrolase
FGF55_01205	COG4585	Histidine kinase
FGF55_01210	COG2197	response regulator
FGF55_01215	COG1131	(ABC) transporter
FGF55_01255	COG0531	amino acid
FGF55_01260	COG3863	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
FGF55_01275	COG0584	glycerophosphoryl diester phosphodiesterase
FGF55_01280	COG2271	Major facilitator Superfamily
FGF55_01295	COG2368	4-hydroxyphenylacetate
FGF55_01305	COG3409	Peptidoglycan-binding domain 1 protein
FGF55_01320	COG0371	Dehydrogenase
FGF55_01330	COG1183	phosphatidylcholine synthase activity
FGF55_01335	COG0586	Pfam SNARE associated Golgi protein
FGF55_01340	COG0688	phosphatidylethanolamine metabolic process
FGF55_01355	COG1301	dicarboxylic acid transport
FGF55_01360	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
FGF55_01365	COG0833	amino acid
FGF55_01370	COG2040	homocysteine
FGF55_01375	COG1115	amino acid carrier protein
FGF55_01380	COG2066	Belongs to the glutaminase family
FGF55_01385	COG4191	Histidine kinase
FGF55_01390	COG0784	Response regulator, receiver
FGF55_01395	COG3173	Aminoglycoside phosphotransferase
FGF55_01415	COG3773	Cell wall hydrolase
FGF55_01425	COG3540	Alkaline phosphatase
FGF55_01430	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
FGF55_01435	COG0805	protein transport
FGF55_01445	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
FGF55_01450	COG0477	Major facilitator Superfamily
FGF55_01455	COG1309	transcriptional regulator
FGF55_01460	COG0252	asparaginase activity
FGF55_01465	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
FGF55_01470	COG1405	negative regulation of cell septum assembly
FGF55_01470	COG3012	SEC-C Motif Domain Protein
FGF55_01475	COG0667	Aldo Keto reductase
FGF55_01485	COG1595	DNA-templated transcription, initiation
FGF55_01490	COG1595	DNA-templated transcription, initiation
FGF55_01495	COG1876	peptidase activity
FGF55_01500	COG0457	Tetratricopeptide repeat
FGF55_01505	COG1028	Short-chain dehydrogenase reductase Sdr
FGF55_01510	COG0366	Alpha amylase catalytic
FGF55_01515	COG0803	Belongs to the bacterial solute-binding protein 9 family
FGF55_01520	COG1121	(ABC) transporter
FGF55_01525	COG1108	ABC-type Mn2 Zn2 transport systems permease components
FGF55_01530	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FGF55_01535	COG2310	stress, protein
FGF55_01540	COG2310	stress, protein
FGF55_01545	COG2310	stress, protein
FGF55_01550	COG0861	Integral membrane protein TerC family
FGF55_01560	COG3853	Toxic anion resistance protein (TelA)
FGF55_01565	COG0477	Major facilitator Superfamily
FGF55_01570	COG0517	IMP dehydrogenase activity
FGF55_01570	COG4175	Glycine betaine
FGF55_01575	COG4176	ABC-type proline glycine betaine transport system permease component
FGF55_01580	COG2113	Glycine betaine
FGF55_01585	COG1473	amidohydrolase
FGF55_01590	COG1288	antiporter activity
FGF55_01600	COG0366	Alpha amylase catalytic
FGF55_01610	COG2814	Major facilitator Superfamily
FGF55_01615	COG1846	Transcriptional regulator
FGF55_01620	COG1280	lysine exporter protein (LysE YggA)
FGF55_01625	COG3403	YqcI/YcgG family
FGF55_01630	COG1113	amino acid transport
FGF55_01635	COG3665	Urea carboxylase-associated protein
FGF55_01650	COG1660	Displays ATPase and GTPase activities
FGF55_01660	COG2271	Major facilitator Superfamily
FGF55_01665	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
FGF55_01670	COG3458	cephalosporin-C deacetylase activity
FGF55_01675	COG3541	Predicted nucleotidyltransferase
FGF55_01680	COG0506	proline dehydrogenase activity
FGF55_01685	COG1012	belongs to the aldehyde dehydrogenase family
FGF55_01690	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
FGF55_01695	COG2508	Transcriptional regulator
FGF55_01705	COG1587	Uroporphyrinogen-III synthase
FGF55_01705	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
FGF55_01710	COG2146	nitrite reductase [NAD(P)H] activity
FGF55_01715	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
FGF55_01720	COG0243	molybdopterin cofactor binding
FGF55_01725	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
FGF55_01730	COG2223	nitrite transmembrane transporter activity
FGF55_01735	COG0523	cobalamin synthesis protein
FGF55_01740	COG1063	alcohol dehydrogenase
FGF55_01745	COG1714	RDD family
FGF55_01755	COG2723	6-phospho-beta-galactosidase activity
FGF55_01765	COG3209	COG3209 Rhs family protein
FGF55_01770	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
FGF55_01775	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
FGF55_01780	COG1733	regulation of RNA biosynthetic process
FGF55_01785	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FGF55_01790	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FGF55_01795	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FGF55_01800	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
FGF55_01815	COG2364	Membrane
FGF55_01820	COG1126	abc transporter atp-binding protein
FGF55_01825	COG0765	amino acid transport
FGF55_01830	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FGF55_01835	COG0583	DNA-binding transcription factor activity
FGF55_01840	COG0163	prenyltransferase activity
FGF55_01845	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
FGF55_01860	COG3104	oligopeptide transport
FGF55_01865	COG5434	Belongs to the glycosyl hydrolase 28 family
FGF55_01875	COG0697	spore germination
FGF55_01885	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
FGF55_01900	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FGF55_01905	COG0765	amino acid transport
FGF55_01910	COG1126	abc transporter atp-binding protein
FGF55_01920	COG2079	MmgE PrpD family protein
FGF55_01925	COG1136	(ABC) transporter
FGF55_01930	COG0577	efflux transmembrane transporter activity
FGF55_01935	COG0745	RESPONSE REGULATOR receiver
FGF55_01940	COG5002	protein histidine kinase activity
FGF55_01940	COG3850	Histidine kinase
FGF55_01945	COG0457	Tetratricopeptide repeat
FGF55_01960	COG0527	aspartate kinase activity
FGF55_01965	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FGF55_01970	COG4605	iron ion homeostasis
FGF55_01975	COG4604	ABC transporter, ATP-binding protein
FGF55_01980	COG4607	ABC-type enterochelin transport system periplasmic component
FGF55_01985	COG2814	Major facilitator Superfamily
FGF55_01990	COG1309	transcriptional regulator
FGF55_01995	COG0778	Nitroreductase
FGF55_02000	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
FGF55_02005	COG0640	Transcriptional regulator
FGF55_02010	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FGF55_02015	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
FGF55_02020	COG1012	belongs to the aldehyde dehydrogenase family
FGF55_02025	COG4975	Glucose uptake
FGF55_02030	COG1028	Short-chain dehydrogenase reductase Sdr
FGF55_02035	COG4549	nuclear export factor GLE1
FGF55_02040	COG1276	copper resistance
FGF55_02040	COG2372	response to copper ion
FGF55_02045	COG1349	DNA-binding transcription factor activity
FGF55_02055	COG2213	PTS system mannitol-specific
FGF55_02060	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
FGF55_02070	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
FGF55_02080	COG0561	phosphatase activity
FGF55_02090	COG1914	H( )-stimulated, divalent metal cation uptake system
FGF55_02100	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
FGF55_02105	COG1984	allophanate hydrolase subunit 2
FGF55_02110	COG1414	Transcriptional regulator
FGF55_02115	COG2755	lipolytic protein G-D-S-L family
FGF55_02125	COG2329	Antibiotic biosynthesis monooxygenase
FGF55_02130	COG0768	penicillin binding
FGF55_02135	COG4989	oxidoreductase activity
FGF55_02140	COG3711	transcriptional antiterminator
FGF55_02145	COG0318	PFAM AMP-dependent synthetase and ligase
FGF55_02150	COG1028	Short-chain dehydrogenase reductase Sdr
FGF55_02155	COG1917	Cupin 2, conserved barrel domain protein
FGF55_02160	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FGF55_02165	COG3871	stress protein (general stress protein 26)
FGF55_02175	COG2814	Major facilitator Superfamily
FGF55_02180	COG1522	sequence-specific DNA binding
FGF55_02185	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
FGF55_02185	COG0551	DNA topoisomerase type I activity
FGF55_02190	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
FGF55_02195	COG3706	GGDEF domain
FGF55_02200	COG5298	Protein conserved in bacteria
FGF55_02205	COG1215	transferase activity, transferring glycosyl groups
FGF55_02215	COG0531	amino acid
FGF55_02220	COG0494	nUDIX hydrolase
FGF55_02225	COG0028	Belongs to the TPP enzyme family
FGF55_02260	COG1914	H( )-stimulated, divalent metal cation uptake system
FGF55_02275	COG4876	unkown
FGF55_02285	COG2076	Multidrug Resistance protein
FGF55_02290	COG2217	Heavy metal translocating P-type atpase
FGF55_02295	COG3729	General stress protein
FGF55_02300	COG0662	Cupin 2, conserved barrel domain protein
FGF55_02305	COG2329	Antibiotic biosynthesis monooxygenase
FGF55_02310	COG3546	catalase activity
FGF55_02315	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FGF55_02320	COG3290	protein histidine kinase activity
FGF55_02325	COG4565	transcriptional regulatory protein
FGF55_02330	COG1301	dicarboxylic acid transport
FGF55_02335	COG0628	permease
FGF55_02340	COG1131	(ABC) transporter
FGF55_02345	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
FGF55_02355	COG1960	acyl-CoA dehydrogenase activity
FGF55_02370	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
FGF55_02375	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FGF55_02385	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
FGF55_02390	COG0513	Belongs to the DEAD box helicase family
FGF55_02395	COG3402	PFAM membrane-flanked domain
FGF55_02400	COG3428	Bacterial PH domain
FGF55_02405	COG0705	Rhomboid family
FGF55_02415	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
FGF55_02420	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
FGF55_02425	COG0864	Transcriptional regulator
FGF55_02430	COG2337	Toxic component of a toxin-antitoxin (TA) module
FGF55_02435	COG1366	Belongs to the anti-sigma-factor antagonist family
FGF55_02440	COG1366	Belongs to the anti-sigma-factor antagonist family
FGF55_02445	COG2172	sigma factor antagonist activity
FGF55_02450	COG2208	phosphoserine phosphatase activity
FGF55_02455	COG1366	Belongs to the anti-sigma-factor antagonist family
FGF55_02465	COG1191	sigma factor activity
FGF55_02470	COG2208	phosphoserine phosphatase activity
FGF55_02475	COG2183	response to ionizing radiation
FGF55_02550	COG0457	Tetratricopeptide repeat
FGF55_02560	COG0477	Major facilitator Superfamily
FGF55_02580	COG2030	dehydratase
FGF55_02595	COG1959	2 iron, 2 sulfur cluster binding
FGF55_02600	COG2910	NAD(P)H-binding
FGF55_02610	COG1309	transcriptional regulator
FGF55_02615	COG3239	Fatty acid desaturase
FGF55_02625	COG1278	Cold shock
FGF55_02630	COG1329	Transcriptional regulator
FGF55_02635	COG1937	Protein conserved in bacteria
FGF55_02640	COG2210	Belongs to the sulfur carrier protein TusA family
FGF55_02650	COG0425	Belongs to the sulfur carrier protein TusA family
FGF55_02650	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
FGF55_02655	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FGF55_02655	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
FGF55_02660	COG0425	Belongs to the sulfur carrier protein TusA family
FGF55_02665	COG0730	response to heat
FGF55_02670	COG1794	racemase activity, acting on amino acids and derivatives
FGF55_02685	COG3621	Patatin-like phospholipase
FGF55_02695	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
FGF55_02700	COG1802	Transcriptional regulator
FGF55_02705	COG0251	oxidation-reduction process
FGF55_02710	COG0814	amino acid
FGF55_02715	COG1473	amidohydrolase
FGF55_02720	COG1917	Cupin 2, conserved barrel domain protein
FGF55_02720	COG2207	Transcriptional regulator
FGF55_02730	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FGF55_02735	COG0477	Major facilitator Superfamily
FGF55_02755	COG0277	FAD linked oxidase domain protein
FGF55_02785	COG2318	DinB family
FGF55_02815	COG0351	phosphomethylpyrimidine kinase
FGF55_02830	COG1064	alcohol dehydrogenase
FGF55_02835	COG0789	Transcriptional regulator
FGF55_02845	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FGF55_02860	COG2814	Major facilitator Superfamily
FGF55_02865	COG1309	transcriptional regulator
FGF55_02870	COG0697	spore germination
FGF55_02875	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FGF55_02880	COG5577	PFAM Coat F domain
FGF55_02890	COG1063	alcohol dehydrogenase
FGF55_02895	COG5577	PFAM Coat F domain
FGF55_02905	COG0738	Major facilitator superfamily
FGF55_02930	COG4585	Histidine kinase
FGF55_02935	COG2197	response regulator
FGF55_02940	COG2409	Drug exporters of the RND superfamily
FGF55_02945	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
FGF55_02955	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FGF55_02960	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
FGF55_02970	COG2814	Major facilitator Superfamily
FGF55_02975	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
FGF55_02985	COG0730	response to heat
FGF55_02990	COG0456	acetyltransferase
FGF55_02995	COG0789	Transcriptional regulator
FGF55_02995	COG4978	Transcriptional regulator
FGF55_03000	COG0697	spore germination
FGF55_03005	COG1051	belongs to the nudix hydrolase family
FGF55_03010	COG2226	methyltransferase
FGF55_03015	COG0473	3-isopropylmalate dehydrogenase activity
FGF55_03020	COG1802	Transcriptional regulator
FGF55_03025	COG1819	glycosyl
FGF55_03040	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
FGF55_03045	COG1388	LysM domain
FGF55_03050	COG2814	Major facilitator Superfamily
FGF55_03055	COG2188	Transcriptional regulator
FGF55_03060	COG2186	Transcriptional regulator
FGF55_03065	COG2807	transmembrane transport
FGF55_03070	COG2076	Multidrug Resistance protein
FGF55_03075	COG2076	Multidrug Resistance protein
FGF55_03080	COG1309	transcriptional regulator
FGF55_03085	COG0531	amino acid
FGF55_03095	COG3832	glyoxalase III activity
FGF55_03100	COG0604	alcohol dehydrogenase
FGF55_03105	COG2814	Major facilitator Superfamily
FGF55_03145	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
FGF55_03150	COG0802	atpase or kinase
FGF55_03155	COG1214	PFAM Peptidase M22, glycoprotease
FGF55_03160	COG0456	acetyltransferase
FGF55_03165	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
FGF55_03170	COG0488	(ABC) transporter
FGF55_03185	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
FGF55_03190	COG0805	protein transport
FGF55_03200	COG1266	CAAX protease self-immunity
FGF55_03205	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
FGF55_03225	COG0457	Tetratricopeptide repeat
FGF55_03230	COG1063	alcohol dehydrogenase
FGF55_03235	COG2211	Major facilitator Superfamily
FGF55_03240	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FGF55_03250	COG1842	Phage shock protein A
FGF55_03255	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
FGF55_03260	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
FGF55_03265	COG4260	virion core protein, lumpy skin disease virus
FGF55_03270	COG2755	lipolytic protein G-D-S-L family
FGF55_03270	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
FGF55_03280	COG1595	DNA-templated transcription, initiation
FGF55_03285	COG1063	alcohol dehydrogenase
FGF55_03290	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
FGF55_03295	COG0823	Involved in the tonB-independent uptake of proteins
FGF55_03305	COG2132	Multicopper oxidase
FGF55_03310	COG1113	amino acid transport
FGF55_03315	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
FGF55_03320	COG0714	Associated with various cellular activities
FGF55_03325	COG1721	protein (some members contain a von Willebrand factor type A (vWA) domain
FGF55_03330	COG1305	Transglutaminase-like
FGF55_03340	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
FGF55_03360	COG2211	Major facilitator Superfamily
FGF55_03375	COG2252	PERMEase
FGF55_03380	COG3064	Membrane
FGF55_03400	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
FGF55_03405	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
FGF55_03410	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
FGF55_03415	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
FGF55_03420	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
FGF55_03435	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
FGF55_03445	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
FGF55_03450	COG0138	bifunctional purine biosynthesis protein purh
FGF55_03455	COG0151	Belongs to the GarS family
FGF55_03465	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
FGF55_03470	COG1470	cell adhesion involved in biofilm formation
FGF55_03475	COG4496	protein, YerC YecD
FGF55_03480	COG0069	glutamate synthase activity
FGF55_03495	COG0210	DNA helicase
FGF55_03505	COG4851	CamS sex pheromone cAM373 precursor
FGF55_03510	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
FGF55_03515	COG1285	pathogenesis
FGF55_03520	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
FGF55_03540	COG1309	transcriptional regulator
FGF55_03545	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
FGF55_03550	COG1597	lipid kinase activity
FGF55_03555	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
FGF55_03560	COG1136	(ABC) transporter
FGF55_03570	COG1131	(ABC) transporter
FGF55_03645	COG3546	catalase activity
FGF55_03650	COG0454	-acetyltransferase
FGF55_03660	COG2323	membrane
FGF55_03665	COG2329	Antibiotic biosynthesis monooxygenase
FGF55_03680	COG1366	Belongs to the anti-sigma-factor antagonist family
FGF55_03685	COG5583	Uncharacterized small protein (DUF2292)
FGF55_03690	COG0196	riboflavin kinase activity
FGF55_03695	COG0670	Belongs to the BI1 family
FGF55_03700	COG1846	Transcriptional regulator
FGF55_03705	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
FGF55_03715	COG2124	cytochrome p450
FGF55_03715	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
FGF55_03730	COG1131	(ABC) transporter
FGF55_03745	COG1368	sulfuric ester hydrolase activity
FGF55_03750	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
FGF55_03755	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FGF55_03760	COG1442	glycosyl transferase family 8
FGF55_03765	COG1216	Glycosyl transferase, family 2
FGF55_03770	COG1442	glycosyl transferase family 8
FGF55_03775	COG2223	nitrite transmembrane transporter activity
FGF55_03780	COG0531	amino acid
FGF55_03785	COG1012	belongs to the aldehyde dehydrogenase family
FGF55_03790	COG0840	transmembrane signaling receptor activity
FGF55_03795	COG1028	Short-chain dehydrogenase reductase Sdr
FGF55_03800	COG0457	Tetratricopeptide repeat
FGF55_03800	COG0463	Glycosyl transferase, family 2
FGF55_03805	COG0488	(ABC) transporter
FGF55_03810	COG0789	Transcriptional regulator
FGF55_03815	COG2814	Major facilitator Superfamily
FGF55_03820	COG0488	(ABC) transporter
FGF55_03825	COG0513	Belongs to the DEAD box helicase family
FGF55_03835	COG2130	NADP-dependent
FGF55_03850	COG3866	Pectate lyase
FGF55_03855	COG0471	metal ion transport
FGF55_03870	COG0745	RESPONSE REGULATOR receiver
FGF55_03870	COG2972	Histidine kinase
FGF55_03875	COG3279	Response regulator of the LytR AlgR family
FGF55_03885	COG3764	Sortase (surface protein transpeptidase)
FGF55_03890	COG3290	protein histidine kinase activity
FGF55_03895	COG4565	transcriptional regulatory protein
FGF55_03900	COG3181	Tripartite tricarboxylate transporter family receptor
FGF55_03905	COG2851	Citrate transporter
FGF55_03910	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FGF55_03915	COG4362	Belongs to the NOS family. Bacterial NOS oxygenase subfamily
FGF55_03925	COG2258	MOSC domain
FGF55_03945	COG0024	Methionine aminopeptidase
FGF55_03950	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FGF55_03950	COG1263	PTS System
FGF55_03960	COG1368	sulfuric ester hydrolase activity
FGF55_03970	COG0071	Belongs to the small heat shock protein (HSP20) family
FGF55_03985	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FGF55_03985	COG1263	PTS System
FGF55_03990	COG0366	Alpha amylase catalytic
FGF55_03995	COG2188	Transcriptional regulator
FGF55_04000	COG0778	Nitroreductase
FGF55_04015	COG0737	Belongs to the 5'-nucleotidase family
FGF55_04020	COG0693	protein deglycase activity
FGF55_04025	COG1609	Transcriptional regulator
FGF55_04030	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
FGF55_04040	COG2814	Major facilitator Superfamily
FGF55_04050	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
FGF55_04055	COG4980	gas vesicle protein
FGF55_04060	COG1295	ribonuclease BN
FGF55_04065	COG0477	Major facilitator Superfamily
FGF55_04070	COG0387	Pfam Sodium calcium exchanger
FGF55_04080	COG0668	transmembrane transport
FGF55_04085	COG0535	radical SAM domain protein
FGF55_04095	COG0726	polysaccharide deacetylase
FGF55_04115	COG0745	RESPONSE REGULATOR receiver
FGF55_04120	COG2205	protein histidine kinase activity
FGF55_04125	COG2084	Dehydrogenase
FGF55_04135	COG0598	Magnesium transport protein CorA
FGF55_04140	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
FGF55_04145	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
FGF55_04155	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
FGF55_04160	COG4637	Psort location Cytoplasmic, score
FGF55_04165	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
FGF55_04170	COG0022	dehydrogenase e1 component
FGF55_04175	COG0508	dehydrogenase complex catalyzes the overall conversion of
FGF55_04180	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FGF55_04185	COG3284	Transcriptional regulator
FGF55_04200	COG1737	Transcriptional regulator
FGF55_04205	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FGF55_04205	COG1263	PTS System
FGF55_04210	COG1132	(ABC) transporter
FGF55_04215	COG1132	(ABC) transporter
FGF55_04220	COG2259	Doxx family
FGF55_04225	COG2514	catechol 2,3-dioxygenase activity
FGF55_04240	COG1695	Transcriptional regulator
FGF55_04245	COG2249	NAD(P)H dehydrogenase (quinone) activity
FGF55_04250	COG3936	Protein involved in polysaccharide intercellular adhesin (PIA) synthesis biofilm formation
FGF55_04255	COG0574	Belongs to the PEP-utilizing enzyme family
FGF55_04255	COG3848	Pyruvate phosphate dikinase
FGF55_04260	COG2732	(Barnase) inhibitor
FGF55_04265	COG2318	DinB family
FGF55_04270	COG2814	Major facilitator Superfamily
FGF55_04275	COG1846	Transcriptional regulator
FGF55_04280	COG0392	lysyltransferase activity
FGF55_04280	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
FGF55_04285	COG0384	phenazine biosynthesis protein PhzF
FGF55_04290	COG0778	Nitroreductase
FGF55_04305	COG1090	epimerase
FGF55_04320	COG2814	Major facilitator Superfamily
FGF55_04330	COG3591	Belongs to the peptidase S1B family
FGF55_04345	COG3103	Sh3 type 3 domain protein
FGF55_04350	COG5658	integral membrane protein
FGF55_04355	COG0596	Alpha beta hydrolase
FGF55_04360	COG0463	Glycosyl transferase, family 2
FGF55_04365	COG4485	Bacterial membrane protein, YfhO
FGF55_04370	COG1988	membrane-bound metal-dependent
FGF55_04375	COG1194	a g-specific adenine glycosylase
FGF55_04385	COG1028	Short-chain dehydrogenase reductase Sdr
FGF55_04405	COG1132	(ABC) transporter
FGF55_04410	COG4129	membrane
FGF55_04420	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
FGF55_04425	COG0735	belongs to the Fur family
FGF55_04535	COG1757	Na H antiporter
FGF55_04540	COG3340	Belongs to the peptidase S51 family
FGF55_04560	COG0747	negative chemotaxis
FGF55_04565	COG0601	transmembrane transport
FGF55_04570	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FGF55_04575	COG0444	Belongs to the ABC transporter superfamily
FGF55_04580	COG4608	Belongs to the ABC transporter superfamily
FGF55_04585	COG0753	catalase activity
FGF55_04600	COG1116	anion transmembrane transporter activity
FGF55_04605	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
FGF55_04610	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FGF55_04630	COG1476	TRANSCRIPTIONal
FGF55_04640	COG3382	B3 4 domain protein
FGF55_04645	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
FGF55_04655	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
FGF55_04660	COG0789	Transcriptional regulator
FGF55_04665	COG1664	Polymer-forming cytoskeletal
FGF55_04670	COG1664	Polymer-forming cytoskeletal
FGF55_04675	COG2766	serine protein kinase
FGF55_04690	COG1846	Transcriptional regulator
FGF55_04695	COG1566	PFAM secretion protein HlyD family protein
FGF55_04700	COG2814	Major facilitator Superfamily
FGF55_04705	COG0655	NAD(P)H dehydrogenase (quinone) activity
FGF55_04720	COG1725	Transcriptional regulator
FGF55_04725	COG1131	(ABC) transporter
FGF55_04730	COG1131	(ABC) transporter
FGF55_04735	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
FGF55_04740	COG1278	Cold shock
FGF55_04750	COG1464	Belongs to the NlpA lipoprotein family
FGF55_04755	COG3706	GGDEF domain
FGF55_04760	COG1823	symporter activity
FGF55_04780	COG5577	PFAM Coat F domain
FGF55_04785	COG1525	nuclease
FGF55_04785	COG0737	Belongs to the 5'-nucleotidase family
FGF55_04785	COG4085	toxin activity
FGF55_04790	COG3764	Sortase (surface protein transpeptidase)
FGF55_04795	COG0564	pseudouridine synthase activity
FGF55_04805	COG0517	IMP dehydrogenase activity
FGF55_04810	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
FGF55_04815	COG3153	acetyltransferase
FGF55_04815	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
FGF55_04820	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
FGF55_04825	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
FGF55_04830	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
FGF55_04840	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
FGF55_04845	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
FGF55_04850	COG2203	Gaf domain
FGF55_04850	COG4585	Histidine kinase
FGF55_04855	COG2197	response regulator
FGF55_04860	COG0431	NADPH-dependent FMN reductase
FGF55_04875	COG0791	NLP P60 protein
FGF55_04875	COG1388	LysM domain
FGF55_04880	COG1959	2 iron, 2 sulfur cluster binding
FGF55_04885	COG0668	transmembrane transport
FGF55_04890	COG2719	SpoVR family
FGF55_04895	COG1785	Belongs to the alkaline phosphatase family
FGF55_04900	COG0791	NLP P60 protein
FGF55_04900	COG1388	LysM domain
FGF55_04905	COG0583	DNA-binding transcription factor activity
FGF55_04910	COG0372	Belongs to the citrate synthase family
FGF55_04915	COG1028	Short-chain dehydrogenase reductase Sdr
FGF55_04920	COG0531	amino acid
FGF55_04925	COG0733	neurotransmitter:sodium symporter activity
FGF55_04940	COG1595	DNA-templated transcription, initiation
FGF55_04945	COG0204	Acyl-transferase
FGF55_04950	COG1253	flavin adenine dinucleotide binding
FGF55_04955	COG0789	Transcriptional regulator
FGF55_04960	COG0436	Aminotransferase
FGF55_04965	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
FGF55_04970	COG1253	flavin adenine dinucleotide binding
FGF55_04975	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
FGF55_04980	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
FGF55_04985	COG0584	glycerophosphoryl diester phosphodiesterase
FGF55_04995	COG0668	transmembrane transport
FGF55_05000	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
FGF55_05005	COG0726	polysaccharide deacetylase
FGF55_05010	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
FGF55_05015	COG3226	Transcriptional regulator
FGF55_05025	COG0589	response to stress
FGF55_05030	COG1132	(ABC) transporter
FGF55_05035	COG1132	(ABC) transporter
FGF55_05040	COG0702	epimerase
FGF55_05060	COG0189	ligase activity
FGF55_05065	COG0189	ligase activity
FGF55_05080	COG4335	DNA alkylation repair
FGF55_05085	COG0561	phosphatase activity
FGF55_05090	COG0635	Involved in the biosynthesis of porphyrin-containing compound
FGF55_05100	COG0475	glutathione-regulated potassium exporter activity
FGF55_05105	COG0490	domain, Protein
FGF55_05115	COG1024	Enoyl-CoA hydratase
FGF55_05125	COG4152	abc transporter atp-binding protein
FGF55_05130	COG1668	transmembrane transport
FGF55_05135	COG0420	3'-5' exonuclease activity
FGF55_05140	COG4717	serine-type aminopeptidase activity
FGF55_05155	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
FGF55_05195	COG4980	gas vesicle protein
FGF55_05210	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
FGF55_05215	COG0537	adenosine 5'-monophosphoramidase activity
FGF55_05220	COG1131	(ABC) transporter
FGF55_05225	COG4473	ABC transporter
FGF55_05235	COG1473	amidohydrolase
FGF55_05240	COG3069	C4-dicarboxylate transmembrane transporter activity
FGF55_05245	COG2329	Antibiotic biosynthesis monooxygenase
FGF55_05250	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
FGF55_05270	COG1309	transcriptional regulator
FGF55_05275	COG1511	domain protein
FGF55_05280	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
FGF55_05290	COG1363	Peptidase, m42
FGF55_05295	COG1301	dicarboxylic acid transport
FGF55_05305	COG1234	tRNA 3'-trailer cleavage
FGF55_05310	COG0095	Lipoate-protein ligase
FGF55_05315	COG0702	epimerase
FGF55_05320	COG0318	PFAM AMP-dependent synthetase and ligase
FGF55_05330	COG0501	Belongs to the peptidase M48B family
FGF55_05335	COG1404	Belongs to the peptidase S8 family
FGF55_05345	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
FGF55_05350	COG0406	alpha-ribazole phosphatase activity
FGF55_05355	COG0183	Belongs to the thiolase family
FGF55_05360	COG0318	PFAM AMP-dependent synthetase and ligase
FGF55_05365	COG1268	BioY protein
FGF55_05370	COG0840	transmembrane signaling receptor activity
FGF55_05375	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FGF55_05375	COG0723	plastoquinol--plastocyanin reductase activity
FGF55_05380	COG1028	Short-chain dehydrogenase reductase Sdr
FGF55_05390	COG4903	ComK protein
FGF55_05395	COG5646	InterPro IPR014922
FGF55_05420	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
FGF55_05435	COG0398	Pfam SNARE associated Golgi protein
FGF55_05440	COG0681	Belongs to the peptidase S26 family
FGF55_05445	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
FGF55_05450	COG1846	Transcriptional regulator
FGF55_05455	COG3180	Ammonia monooxygenase
FGF55_05460	COG2814	Major facilitator Superfamily
FGF55_05470	COG1633	Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME)
FGF55_05475	COG2323	membrane
FGF55_05490	COG0420	3'-5' exonuclease activity
FGF55_05495	COG0419	ATPase involved in DNA repair
FGF55_05500	COG1403	HNH endonuclease
FGF55_05540	COG0179	Fumarylacetoacetate (FAA) hydrolase
FGF55_05555	COG0367	asparagine synthase
FGF55_05560	COG1562	ergosterol biosynthetic process
FGF55_05565	COG0534	Mate efflux family protein
FGF55_05570	COG1917	Cupin 2, conserved barrel domain protein
FGF55_05570	COG2207	Transcriptional regulator
FGF55_05575	COG1609	Transcriptional regulator
FGF55_05580	COG0673	inositol 2-dehydrogenase activity
FGF55_05585	COG2318	DinB family
FGF55_05590	COG1279	arginine transmembrane transporter activity
FGF55_05595	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FGF55_05600	COG1357	PFAM Pentapeptide repeats (8 copies)
FGF55_05605	COG2153	protein acetylation
FGF55_05610	COG0646	methionine synthase
FGF55_05610	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
FGF55_05620	COG2996	Protein conserved in bacteria
FGF55_05630	COG0840	transmembrane signaling receptor activity
FGF55_05635	COG2124	cytochrome p450
FGF55_05645	COG1307	EDD domain protein, DegV family
FGF55_05650	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
FGF55_05665	COG0561	phosphatase activity
FGF55_05670	COG1073	alpha beta
FGF55_05675	COG2151	metal-sulfur cluster biosynthetic enzyme
FGF55_05685	COG0277	FAD linked oxidase domain protein
FGF55_05690	COG2271	Major facilitator Superfamily
FGF55_05710	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
FGF55_05715	COG0505	Belongs to the CarA family
FGF55_05720	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
FGF55_05725	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
FGF55_05745	COG2267	carboxylic ester hydrolase activity
FGF55_05755	COG1744	ABC transporter substrate-binding protein PnrA-like
FGF55_05770	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
FGF55_05775	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
FGF55_05780	COG5504	Zn-dependent protease
FGF55_05785	COG0444	Belongs to the ABC transporter superfamily
FGF55_05790	COG4608	Belongs to the ABC transporter superfamily
FGF55_05800	COG0601	transmembrane transport
FGF55_05805	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FGF55_05815	COG0180	Tryptophanyl-tRNA synthetase
FGF55_05820	COG4166	transmembrane transport
FGF55_05825	COG0601	transmembrane transport
FGF55_05830	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FGF55_05835	COG0444	Belongs to the ABC transporter superfamily
FGF55_05840	COG4608	Belongs to the ABC transporter superfamily
FGF55_05850	COG0456	acetyltransferase
FGF55_05855	COG1393	Belongs to the ArsC family
FGF55_05860	COG0861	Integral membrane protein TerC family
FGF55_05865	COG4862	establishment of competence for transformation
FGF55_05870	COG4469	Competence protein
FGF55_05875	COG1164	Oligoendopeptidase f
FGF55_05885	COG2346	COG2346, Truncated hemoglobins
FGF55_05890	COG0741	lytic transglycosylase activity
FGF55_05895	COG4116	CYTH
FGF55_05905	COG2357	RelA SpoT domain protein
FGF55_05910	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
FGF55_05915	COG0564	pseudouridine synthase activity
FGF55_05930	COG0475	glutathione-regulated potassium exporter activity
FGF55_05930	COG0569	domain protein
FGF55_05935	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
FGF55_05940	COG0352	thiamine-phosphate diphosphorylase activity
FGF55_05945	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FGF55_05950	COG2104	thiamine diphosphate biosynthetic process
FGF55_05960	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
FGF55_05965	COG0351	phosphomethylpyrimidine kinase
FGF55_05970	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
FGF55_06025	COG0210	DNA helicase
FGF55_06045	COG1131	(ABC) transporter
FGF55_06055	COG2153	protein acetylation
FGF55_06065	COG2382	esterase
FGF55_06070	COG0626	cystathionine gamma-synthase activity
FGF55_06075	COG0626	cystathionine gamma-synthase activity
FGF55_06140	COG1484	DNA-dependent DNA replication
FGF55_06160	COG3655	Transcriptional regulator
FGF55_06220	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
FGF55_06245	COG1780	Probably involved in ribonucleotide reductase function
FGF55_06255	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
FGF55_06260	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
FGF55_06265	COG0756	dUTP diphosphatase activity
FGF55_06275	COG1351	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NAD(P)H and FADH(2) as the reductant
FGF55_06280	COG3584	3D domain protein
FGF55_06280	COG1388	LysM domain
FGF55_06305	COG1595	DNA-templated transcription, initiation
FGF55_06320	COG1793	dna ligase
FGF55_06365	COG0582	viral genome integration into host DNA
FGF55_06450	COG1705	Flagellar rod assembly protein muramidase FlgJ
FGF55_06460	COG5434	Belongs to the glycosyl hydrolase 28 family
FGF55_06485	COG3409	Peptidoglycan-binding domain 1 protein
FGF55_06485	COG5632	N-Acetylmuramoyl-L-alanine amidase
FGF55_06535	COG5444	nuclease activity
FGF55_06555	COG0135	phosphoribosylanthranilate isomerase activity
FGF55_06565	COG0346	lactoylglutathione lyase activity
FGF55_06570	COG2367	Beta-lactamase
FGF55_06575	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
FGF55_06580	COG0477	Major facilitator Superfamily
FGF55_06585	COG1846	Transcriptional regulator
FGF55_06595	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
FGF55_06600	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
FGF55_06605	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
FGF55_06610	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
FGF55_06610	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
FGF55_06615	COG1447	Phosphotransferase system cellobiose-specific component IIA
FGF55_06645	COG1285	pathogenesis
FGF55_06660	COG2205	protein histidine kinase activity
FGF55_06670	COG3383	formate dehydrogenase (NAD+) activity
FGF55_06675	COG2427	Protein of unknown function (DUF1641)
FGF55_06680	COG2124	cytochrome p450
FGF55_06685	COG1819	glycosyl
FGF55_06695	COG1587	Uroporphyrinogen-III synthase
FGF55_06700	COG0390	transport system, permease component
FGF55_06705	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
FGF55_06710	COG0697	spore germination
FGF55_06715	COG4297	protein containing double-stranded beta helix domain
FGF55_06725	COG1252	NADH dehydrogenase
FGF55_06735	COG2211	Major facilitator Superfamily
FGF55_06740	COG1609	Transcriptional regulator
FGF55_06745	COG0246	Mannitol dehydrogenase
FGF55_06750	COG2721	sulfolactate sulfo-lyase activity
FGF55_06755	COG0730	response to heat
FGF55_06760	COG2318	DinB family
FGF55_06765	COG0457	Tetratricopeptide repeat
FGF55_06775	COG3409	Peptidoglycan-binding domain 1 protein
FGF55_06775	COG5632	N-Acetylmuramoyl-L-alanine amidase
FGF55_06775	COG1388	LysM domain
FGF55_06785	COG4195	phage-related replication protein
FGF55_06790	COG2856	Zn peptidase
FGF55_06795	COG1396	sequence-specific DNA binding
FGF55_06805	COG1522	sequence-specific DNA binding
FGF55_06810	COG1484	DNA-dependent DNA replication
FGF55_06825	COG1595	DNA-templated transcription, initiation
FGF55_06830	COG4193	domain, Protein
FGF55_06865	COG3409	Peptidoglycan-binding domain 1 protein
FGF55_06865	COG5632	N-Acetylmuramoyl-L-alanine amidase
FGF55_06880	COG0306	phosphate transporter
FGF55_06885	COG1392	Phosphate transport regulator
FGF55_06890	COG0531	amino acid
FGF55_06895	COG0346	lactoylglutathione lyase activity
FGF55_06900	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
FGF55_06905	COG0463	Glycosyl transferase, family 2
FGF55_06910	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
FGF55_06915	COG0477	Major facilitator Superfamily
FGF55_06920	COG2362	D-Aminopeptidase
FGF55_06925	COG0601	transmembrane transport
FGF55_06930	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FGF55_06935	COG0444	Belongs to the ABC transporter superfamily
FGF55_06940	COG4166	transmembrane transport
FGF55_06945	COG1619	proteins homologs of microcin C7 resistance protein MccF
FGF55_06950	COG4948	Mandelate Racemase Muconate Lactonizing
FGF55_06955	COG0791	NLP P60 protein
FGF55_06960	COG4608	Belongs to the ABC transporter superfamily
FGF55_06965	COG2706	6-phosphogluconolactonase activity
FGF55_06970	COG1834	amidinotransferase
FGF55_06975	COG1607	acyl-coa hydrolase
FGF55_06980	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FGF55_06985	COG2076	Multidrug Resistance protein
FGF55_06990	COG2076	Multidrug Resistance protein
FGF55_06995	COG0788	formyltetrahydrofolate deformylase activity
FGF55_07000	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
FGF55_07010	COG1764	response to oxidative stress
FGF55_07015	COG1846	Transcriptional regulator
FGF55_07020	COG1764	response to oxidative stress
FGF55_07035	COG0463	Glycosyl transferase, family 2
FGF55_07035	COG0457	Tetratricopeptide repeat
FGF55_07045	COG2814	Major facilitator Superfamily
FGF55_07050	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
FGF55_07060	COG1404	Belongs to the peptidase S8 family
FGF55_07065	COG1366	Belongs to the anti-sigma-factor antagonist family
FGF55_07070	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
FGF55_07075	COG1122	ATPase activity
FGF55_07080	COG4721	ABC-type cobalt transport system, permease component
FGF55_07085	COG3858	chitin binding
FGF55_07085	COG1388	LysM domain
FGF55_07105	COG2239	Acts as a magnesium transporter
FGF55_07110	COG0789	Transcriptional regulator
FGF55_07125	COG1846	Transcriptional regulator
FGF55_07130	COG0726	polysaccharide deacetylase
FGF55_07135	COG3285	dna ligase
FGF55_07135	COG1793	dna ligase
FGF55_07140	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
FGF55_07150	COG0586	Pfam SNARE associated Golgi protein
FGF55_07155	COG0861	Integral membrane protein TerC family
FGF55_07160	COG1191	sigma factor activity
FGF55_07185	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
FGF55_07190	COG2323	membrane
FGF55_07200	COG3594	Acyltransferase
FGF55_07205	COG5002	protein histidine kinase activity
FGF55_07210	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
FGF55_07225	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
FGF55_07230	COG0436	Aminotransferase
FGF55_07260	COG3852	Histidine kinase
FGF55_07265	COG1846	Transcriptional regulator
FGF55_07270	COG1360	Flagellar Motor Protein
FGF55_07275	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
FGF55_07280	COG0542	response to heat
FGF55_07290	COG3949	Membrane
FGF55_07305	COG0720	synthase
FGF55_07310	COG0602	queuosine metabolic process
FGF55_07320	COG1733	regulation of RNA biosynthetic process
FGF55_07325	COG1028	Short-chain dehydrogenase reductase Sdr
FGF55_07340	COG4873	Protein conserved in bacteria
FGF55_07350	COG3773	Cell wall hydrolase
FGF55_07355	COG2244	polysaccharide biosynthetic process
FGF55_07360	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FGF55_07365	COG2217	Heavy metal translocating P-type atpase
FGF55_07370	COG0006	proline dipeptidase activity
FGF55_07375	COG1609	Transcriptional regulator
FGF55_07380	COG3711	transcriptional antiterminator
FGF55_07385	COG1263	PTS System
FGF55_07385	COG2190	(PTS) system
FGF55_07385	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FGF55_07390	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
FGF55_07395	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
FGF55_07405	COG1533	DNA photolyase activity
FGF55_07410	COG0840	transmembrane signaling receptor activity
FGF55_07415	COG2084	Dehydrogenase
FGF55_07425	COG2340	Cysteine-rich secretory protein family
FGF55_07430	COG0768	penicillin binding
FGF55_07435	COG4191	Histidine kinase
FGF55_07440	COG0436	Aminotransferase
FGF55_07450	COG0784	Response regulator, receiver
FGF55_07450	COG0835	chemotaxis
FGF55_07460	COG2814	Major facilitator Superfamily
FGF55_07465	COG1376	ErfK ybiS ycfS ynhG family protein
FGF55_07470	COG1408	metallophosphoesterase
FGF55_07475	COG1028	Short-chain dehydrogenase reductase Sdr
FGF55_07485	COG2200	EAL domain
FGF55_07490	COG4703	Protein of unknown function (DUF1797)
FGF55_07495	COG1978	Selenoprotein B, glycine betaine sarcosine D-proline reductase family
FGF55_07505	COG0517	IMP dehydrogenase activity
FGF55_07510	COG0583	DNA-binding transcription factor activity
FGF55_07515	COG0716	FMN binding
FGF55_07525	COG0716	FMN binding
FGF55_07545	COG0668	transmembrane transport
FGF55_07550	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FGF55_07570	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
FGF55_07575	COG0303	'Molybdopterin
FGF55_07580	COG1763	Mo-molybdopterin cofactor biosynthetic process
FGF55_07585	COG0314	molybdopterin synthase activity
FGF55_07590	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
FGF55_07600	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FGF55_07605	COG1136	(ABC) transporter
FGF55_07610	COG0577	efflux transmembrane transporter activity
FGF55_07615	COG1349	DNA-binding transcription factor activity
FGF55_07620	COG1105	Belongs to the carbohydrate kinase PfkB family
FGF55_07625	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
FGF55_07625	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
FGF55_07625	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
FGF55_07630	COG0681	Belongs to the peptidase S26 family
FGF55_07640	COG0488	(ABC) transporter
FGF55_07645	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
FGF55_07650	COG2309	aminopeptidase activity
FGF55_07660	COG1077	Cell shape determining protein MreB Mrl
FGF55_07670	COG2002	toxin-antitoxin pair type II binding
FGF55_07675	COG3852	Histidine kinase
FGF55_07680	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
FGF55_07680	COG2105	PFAM AIG2 family protein
FGF55_07685	COG0569	domain protein
FGF55_07695	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
FGF55_07705	COG0561	phosphatase activity
FGF55_07710	COG0242	peptide deformylase activity
FGF55_07720	COG0497	DNA recombination
FGF55_07735	COG4221	oxidoreductase activity
FGF55_07735	COG1028	Short-chain dehydrogenase reductase Sdr
FGF55_07735	COG3321	synthase
FGF55_07735	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FGF55_07740	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
FGF55_07740	COG0300	oxidoreductase activity
FGF55_07740	COG3321	synthase
FGF55_07740	COG4221	oxidoreductase activity
FGF55_07745	COG3321	synthase
FGF55_07745	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FGF55_07745	COG4221	oxidoreductase activity
FGF55_07745	COG1028	Short-chain dehydrogenase reductase Sdr
FGF55_07750	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
FGF55_07750	COG3321	synthase
FGF55_07750	COG4221	oxidoreductase activity
FGF55_07750	COG0300	oxidoreductase activity
FGF55_07755	COG4221	oxidoreductase activity
FGF55_07755	COG0300	oxidoreductase activity
FGF55_07755	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
FGF55_07755	COG3321	synthase
FGF55_07760	COG0300	oxidoreductase activity
FGF55_07760	COG3321	synthase
FGF55_07760	COG4221	oxidoreductase activity
FGF55_07760	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
FGF55_07765	COG1028	Short-chain dehydrogenase reductase Sdr
FGF55_07765	COG3321	synthase
FGF55_07765	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FGF55_07765	COG4221	oxidoreductase activity
FGF55_07770	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
FGF55_07775	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
FGF55_07780	COG0022	dehydrogenase e1 component
FGF55_07785	COG0508	dehydrogenase complex catalyzes the overall conversion of
FGF55_07790	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FGF55_07795	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FGF55_07810	COG1982	Orn Lys Arg decarboxylase major
FGF55_07835	COG0483	inositol monophosphate 1-phosphatase activity
FGF55_07845	COG3227	Zinc metalloprotease (Elastase)
FGF55_07880	COG4896	Protein conserved in bacteria
FGF55_07890	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
FGF55_07895	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
FGF55_07900	COG2066	Belongs to the glutaminase family
FGF55_07910	COG0772	Belongs to the SEDS family
FGF55_07915	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
FGF55_07930	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
FGF55_07930	COG2010	Cytochrome c
FGF55_07935	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
FGF55_07940	COG1845	cytochrome c oxidase, subunit III
FGF55_07945	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
FGF55_07950	COG3336	cytochrome c oxidase
FGF55_07960	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
FGF55_07965	COG2340	Cysteine-rich secretory protein family
FGF55_07980	COG3679	Belongs to the UPF0342 family
FGF55_07995	COG0742	ribosomal rna small subunit methyltransferase
FGF55_08005	COG3314	Sporulation integral membrane protein YlbJ
FGF55_08010	COG1752	Esterase of the alpha-beta hydrolase superfamily
FGF55_08015	COG3480	Lon protease (S16) C-terminal proteolytic domain
FGF55_08025	COG1399	metal-binding, possibly nucleic acid-binding protein
FGF55_08030	COG0333	Belongs to the bacterial ribosomal protein bL32 family
FGF55_08045	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
FGF55_08065	COG4839	cell division protein FtsL
FGF55_08075	COG0768	penicillin binding
FGF55_08095	COG0772	Belongs to the SEDS family
FGF55_08110	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
FGF55_08115	COG0849	cell division
FGF55_08120	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
FGF55_08125	COG4412	M6 family metalloprotease domain protein
FGF55_08125	COG1404	Belongs to the peptidase S8 family
FGF55_08135	COG1191	sigma factor activity
FGF55_08140	COG1191	sigma factor activity
FGF55_08145	COG1119	ATPase activity
FGF55_08150	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
FGF55_08155	COG1873	PFAM PRC-barrel domain
FGF55_08165	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
FGF55_08175	COG0762	integral membrane protein
FGF55_08180	COG2302	S4 RNA-binding domain
FGF55_08185	COG3599	regulation of cell shape
FGF55_08195	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
FGF55_08200	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
FGF55_08210	COG0564	pseudouridine synthase activity
FGF55_08220	COG2233	PERMEase
FGF55_08230	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
FGF55_08235	COG0505	Belongs to the CarA family
FGF55_08240	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
FGF55_08255	COG0284	orotidine-5'-phosphate decarboxylase activity
FGF55_08260	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
FGF55_08270	COG0306	phosphate transporter
FGF55_08285	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
FGF55_08290	COG2138	Cobalamin (vitamin B12) biosynthesis CbiX protein
FGF55_08295	COG1648	precorrin-2 dehydrogenase activity
FGF55_08310	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
FGF55_08315	COG1561	YicC-like family, N-terminal region
FGF55_08320	COG2052	Domain of unknown function (DUF370)
FGF55_08325	COG0194	GDP metabolic process
FGF55_08335	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
FGF55_08340	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
FGF55_08345	COG0242	peptide deformylase activity
FGF55_08355	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
FGF55_08355	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
FGF55_08365	COG0631	protein serine/threonine phosphatase activity
FGF55_08370	COG0515	serine threonine protein kinase
FGF55_08370	COG2815	serine threonine protein kinase
FGF55_08380	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
FGF55_08385	COG1564	THIamine pyrophosphokinase
FGF55_08400	COG1302	Protein conserved in bacteria
FGF55_08405	COG1461	Dihydroxyacetone kinase
FGF55_08410	COG1760	l-serine dehydratase
FGF55_08415	COG1760	l-serine dehydratase
FGF55_08420	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
FGF55_08435	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
FGF55_08440	COG1028	Short-chain dehydrogenase reductase Sdr
FGF55_08445	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
FGF55_08455	COG1196	nuclear chromosome segregation
FGF55_08460	COG0552	protein localization to endoplasmic reticulum
FGF55_08475	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
FGF55_08485	COG1837	Belongs to the UPF0109 family
FGF55_08510	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
FGF55_08525	COG2257	FlhB HrpN YscU SpaS Family
FGF55_08535	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
FGF55_08540	COG0758	DNA mediated transformation
FGF55_08545	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
FGF55_08555	COG4974	Belongs to the 'phage' integrase family
FGF55_08575	COG1815	bacterial-type flagellum-dependent cell motility
FGF55_08580	COG1558	bacterial-type flagellum-dependent cell motility
FGF55_08585	COG1677	Flagellar hook-basal body complex protein FliE
FGF55_08590	COG1766	The M ring may be actively involved in energy transduction
FGF55_08595	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
FGF55_08600	COG1317	bacterial-type flagellum organization
FGF55_08605	COG1157	protein secretion by the type III secretion system
FGF55_08610	COG2882	bacterial-type flagellum organization
FGF55_08615	COG3334	PFAM MgtE intracellular
FGF55_08620	COG3144	bacterial-type flagellum assembly
FGF55_08625	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
FGF55_08630	COG4786	Flagellar basal body rod
FGF55_08635	COG1582	Flagellar protein (FlbD)
FGF55_08640	COG1580	Controls the rotational direction of flagella during chemotaxis
FGF55_08645	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
FGF55_08650	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
FGF55_08650	COG1776	CheC inhibitor of MCP methylation
FGF55_08655	COG2201	protein-glutamate methylesterase activity
FGF55_08660	COG3190	flagellar
FGF55_08665	COG1338	Plays a role in the flagellum-specific transport system
FGF55_08670	COG1987	bacterial-type flagellum assembly
FGF55_08675	COG1684	flagellar biosynthetic protein fliR
FGF55_08680	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
FGF55_08685	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
FGF55_08690	COG1419	protein localization to endoplasmic reticulum
FGF55_08695	COG0455	bacterial-type flagellum organization
FGF55_08700	COG2201	protein-glutamate methylesterase activity
FGF55_08705	COG2198	Histidine kinase
FGF55_08705	COG0643	Histidine kinase
FGF55_08710	COG0835	chemotaxis
FGF55_08715	COG1776	CheC inhibitor of MCP methylation
FGF55_08725	COG1191	sigma factor activity
FGF55_08755	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
FGF55_08760	COG4589	Belongs to the CDS family
FGF55_08770	COG0750	zinc metalloprotease
FGF55_08790	COG0195	Participates in both transcription termination and antitermination
FGF55_08795	COG2740	Nucleic-acid-binding protein implicated in transcription termination
FGF55_08800	COG1358	cellular component organization or biogenesis
FGF55_08810	COG1550	Protein conserved in bacteria
FGF55_08825	COG0196	riboflavin kinase activity
FGF55_08840	COG0726	polysaccharide deacetylase
FGF55_08845	COG0612	Peptidase, M16
FGF55_08850	COG1873	PFAM PRC-barrel domain
FGF55_08855	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
FGF55_08860	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
FGF55_08865	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
FGF55_08870	COG0527	aspartate kinase activity
FGF55_08880	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
FGF55_08885	COG0740	serine-type endopeptidase activity
FGF55_08895	COG1674	ftsk spoiiie
FGF55_08895	COG4980	gas vesicle protein
FGF55_08900	COG2188	Transcriptional regulator
FGF55_08905	COG2814	Major facilitator Superfamily
FGF55_08910	COG1846	Transcriptional regulator
FGF55_08915	COG2409	Drug exporters of the RND superfamily
FGF55_08915	COG1033	growth of symbiont in host cell
FGF55_08920	COG0612	Peptidase, M16
FGF55_08925	COG0612	Peptidase, M16
FGF55_08930	COG0300	oxidoreductase activity
FGF55_08945	COG1426	Protein conserved in bacteria
FGF55_08950	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
FGF55_08965	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
FGF55_08975	COG1692	metallophosphoesterase
FGF55_08980	COG2359	stage V sporulation protein S
FGF55_09000	COG4550	Control of competence regulator ComK, YlbF/YmcA
FGF55_09075	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
FGF55_09080	COG3425	synthase
FGF55_09085	COG1024	Enoyl-CoA hydratase
FGF55_09090	COG1024	Enoyl-CoA hydratase
FGF55_09095	COG0318	PFAM AMP-dependent synthetase and ligase
FGF55_09095	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FGF55_09095	COG0300	oxidoreductase activity
FGF55_09095	COG3321	synthase
FGF55_09095	COG1028	Short-chain dehydrogenase reductase Sdr
FGF55_09100	COG3321	synthase
FGF55_09100	COG0300	oxidoreductase activity
FGF55_09100	COG4221	oxidoreductase activity
FGF55_09100	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
FGF55_09105	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FGF55_09105	COG1028	Short-chain dehydrogenase reductase Sdr
FGF55_09105	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FGF55_09105	COG3321	synthase
FGF55_09105	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
FGF55_09105	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FGF55_09105	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
FGF55_09105	COG1028	Short-chain dehydrogenase reductase Sdr
FGF55_09105	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FGF55_09105	COG3321	synthase
FGF55_09110	COG4221	oxidoreductase activity
FGF55_09110	COG3321	synthase
FGF55_09110	COG1028	Short-chain dehydrogenase reductase Sdr
FGF55_09110	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FGF55_09115	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
FGF55_09115	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
FGF55_09115	COG3321	synthase
FGF55_09115	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
FGF55_09120	COG2124	cytochrome p450
FGF55_09130	COG3619	membrane
FGF55_09140	COG1404	Belongs to the peptidase S8 family
FGF55_09150	COG4195	phage-related replication protein
FGF55_09155	COG1764	response to oxidative stress
FGF55_09165	COG2076	Multidrug Resistance protein
FGF55_09205	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
FGF55_09210	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
FGF55_09215	COG4112	unkown
FGF55_09220	COG0860	N-Acetylmuramoyl-L-alanine amidase
FGF55_09230	COG0464	growth
FGF55_09235	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
FGF55_09240	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
FGF55_09245	COG0789	Transcriptional regulator
FGF55_09250	COG0174	glutamine synthetase
FGF55_09280	COG2211	Major facilitator Superfamily
FGF55_09285	COG3507	Belongs to the glycosyl hydrolase 43 family
FGF55_09300	COG1070	Carbohydrate kinase
FGF55_09325	COG2378	regulation of single-species biofilm formation
FGF55_09330	COG2318	DinB family
FGF55_09335	COG1064	alcohol dehydrogenase
FGF55_09360	COG0456	acetyltransferase
FGF55_09365	COG5444	nuclease activity
FGF55_09430	COG3397	chitin binding
FGF55_09440	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FGF55_09450	COG5434	Belongs to the glycosyl hydrolase 28 family
FGF55_09455	COG0756	dUTP diphosphatase activity
FGF55_09460	COG4195	phage-related replication protein
FGF55_09490	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
FGF55_09500	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
FGF55_09520	COG0785	Cytochrome C biogenesis protein
FGF55_09525	COG2201	protein-glutamate methylesterase activity
FGF55_09530	COG4846	Membrane protein involved in cytochrome C biogenesis
FGF55_09540	COG0071	Belongs to the small heat shock protein (HSP20) family
FGF55_09555	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
FGF55_09560	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FGF55_09580	COG0824	Thioesterase
FGF55_09590	COG4841	protein insertion into membrane
FGF55_09600	COG1832	CoA-binding protein
FGF55_09605	COG0187	DNA topoisomerase II activity
FGF55_09610	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
FGF55_09620	COG1115	amino acid carrier protein
FGF55_09630	COG1063	alcohol dehydrogenase
FGF55_09635	COG0800	Aldolase
FGF55_09640	COG1312	Catalyzes the dehydration of D-mannonate
FGF55_09645	COG1028	Short-chain dehydrogenase reductase Sdr
FGF55_09650	COG1609	Transcriptional regulator
FGF55_09655	COG2271	Major facilitator Superfamily
FGF55_09700	COG2205	protein histidine kinase activity
FGF55_09705	COG0745	RESPONSE REGULATOR receiver
FGF55_09715	COG3507	Belongs to the glycosyl hydrolase 43 family
FGF55_09740	COG1028	Short-chain dehydrogenase reductase Sdr
FGF55_09745	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
FGF55_09750	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
FGF55_09755	COG2610	gluconate transmembrane transporter activity
FGF55_09760	COG2124	cytochrome p450
FGF55_09765	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
FGF55_09780	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
FGF55_09790	COG2246	polysaccharide biosynthetic process
FGF55_09795	COG1210	Utp--glucose-1-phosphate uridylyltransferase
FGF55_09800	COG0586	Pfam SNARE associated Golgi protein
FGF55_09805	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
FGF55_09810	COG1024	Enoyl-CoA hydratase
FGF55_09815	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
FGF55_09820	COG0511	ligase activity, forming carbon-carbon bonds
FGF55_09825	COG0439	Biotin carboxylase
FGF55_09830	COG0318	PFAM AMP-dependent synthetase and ligase
FGF55_09835	COG1960	acyl-CoA dehydrogenase activity
FGF55_09840	COG1649	PFAM Uncharacterised BCR, COG1649
FGF55_09850	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FGF55_09850	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
FGF55_09855	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FGF55_09860	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FGF55_09865	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FGF55_09870	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FGF55_09880	COG2027	D-alanyl-D-alanine carboxypeptidase
FGF55_09885	COG2017	converts alpha-aldose to the beta-anomer
FGF55_09890	COG0534	Mate efflux family protein
FGF55_09905	COG0582	viral genome integration into host DNA
FGF55_09910	COG0166	Belongs to the GPI family
FGF55_09915	COG0405	Gamma-glutamyltransferase
FGF55_09920	COG2814	Major facilitator Superfamily
FGF55_09925	COG0640	Transcriptional regulator
FGF55_09930	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
FGF55_09940	COG0604	alcohol dehydrogenase
FGF55_09950	COG0493	'glutamate synthase
FGF55_09955	COG0069	glutamate synthase activity
FGF55_09955	COG0067	glutamate synthase
FGF55_09955	COG0070	glutamate synthase
FGF55_09960	COG0583	DNA-binding transcription factor activity
FGF55_09965	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
FGF55_09980	COG0300	oxidoreductase activity
FGF55_09985	COG4768	protein containing a divergent version of the methyl-accepting chemotaxis-like domain
FGF55_09995	COG2814	Major facilitator Superfamily
FGF55_10000	COG1070	Carbohydrate kinase
FGF55_10005	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
FGF55_10010	COG0243	molybdopterin cofactor binding
FGF55_10040	COG5444	nuclease activity
FGF55_10045	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FGF55_10050	COG0662	Cupin 2, conserved barrel domain protein
FGF55_10050	COG2207	Transcriptional regulator
FGF55_10055	COG1309	transcriptional regulator
FGF55_10060	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FGF55_10070	COG0640	Transcriptional regulator
FGF55_10075	COG0741	lytic transglycosylase activity
FGF55_10080	COG2322	membrane
FGF55_10095	COG1619	proteins homologs of microcin C7 resistance protein MccF
FGF55_10105	COG3584	3D domain protein
FGF55_10105	COG1388	LysM domain
FGF55_10110	COG0514	ATP-dependent DNA helicase (RecQ)
FGF55_10120	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
FGF55_10125	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
FGF55_10140	COG0071	Belongs to the small heat shock protein (HSP20) family
FGF55_10175	COG1012	belongs to the aldehyde dehydrogenase family
FGF55_10180	COG1657	PFAM Prenyltransferase squalene oxidase
FGF55_10185	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
FGF55_10190	COG0733	neurotransmitter:sodium symporter activity
FGF55_10195	COG0385	Bile acid
FGF55_10200	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FGF55_10205	COG0508	dehydrogenase complex catalyzes the overall conversion of
FGF55_10215	COG4548	von Willebrand factor, type A
FGF55_10220	COG0714	Associated with various cellular activities
FGF55_10225	COG2032	superoxide dismutase activity
FGF55_10230	COG0791	NLP P60 protein
FGF55_10230	COG1388	LysM domain
FGF55_10235	COG1819	glycosyl
FGF55_10240	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
FGF55_10245	COG0534	Mate efflux family protein
FGF55_10250	COG1366	Belongs to the anti-sigma-factor antagonist family
FGF55_10255	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
FGF55_10260	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
FGF55_10270	COG2962	Rard protein
FGF55_10285	COG1942	4-Oxalocrotonate Tautomerase
FGF55_10295	COG1733	regulation of RNA biosynthetic process
FGF55_10300	COG0778	Nitroreductase
FGF55_10305	COG0400	carboxylic ester hydrolase activity
FGF55_10310	COG0346	lactoylglutathione lyase activity
FGF55_10320	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
FGF55_10330	COG2723	6-phospho-beta-galactosidase activity
FGF55_10335	COG2188	Transcriptional regulator
FGF55_10340	COG0793	Belongs to the peptidase S41A family
FGF55_10340	COG3409	Peptidoglycan-binding domain 1 protein
FGF55_10345	COG2226	methyltransferase
FGF55_10355	COG1876	peptidase activity
FGF55_10375	COG0671	phosphoesterase, PA-phosphatase related
FGF55_10405	COG1509	lysine 2,3-aminomutase activity
FGF55_10410	COG0456	acetyltransferase
FGF55_10415	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
FGF55_10420	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
FGF55_10425	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
FGF55_10430	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
FGF55_10435	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
FGF55_10445	COG0456	acetyltransferase
FGF55_10465	COG4641	Protein conserved in bacteria
FGF55_10475	COG1086	Polysaccharide biosynthesis protein
FGF55_10490	COG1846	Transcriptional regulator
FGF55_10495	COG4698	Protein conserved in bacteria
FGF55_10500	COG2755	lipolytic protein G-D-S-L family
FGF55_10505	COG1999	signal sequence binding
FGF55_10515	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
FGF55_10520	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
FGF55_10525	COG1272	protein, Hemolysin III
FGF55_10530	COG0204	Acyl-transferase
FGF55_10535	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
FGF55_10550	COG2521	methyltransferase
FGF55_10550	COG2136	Putative SAM-dependent methyltransferase
FGF55_10565	COG1413	lyase activity
FGF55_10570	COG1418	mRNA catabolic process
FGF55_10575	COG0386	Belongs to the glutathione peroxidase family
FGF55_10585	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
FGF55_10595	COG1278	Cold shock
FGF55_10615	COG0328	RNA-DNA hybrid ribonuclease activity
FGF55_10620	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
FGF55_10625	COG0328	RNA-DNA hybrid ribonuclease activity
FGF55_10635	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
FGF55_10650	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
FGF55_10660	COG1755	Isoprenylcysteine carboxyl methyltransferase
FGF55_10665	COG3424	synthase
FGF55_10690	COG1335	isochorismatase
FGF55_10730	COG4824	toxin secretion phage lysis holin
FGF55_10750	COG5434	Belongs to the glycosyl hydrolase 28 family
FGF55_10755	COG1705	Flagellar rod assembly protein muramidase FlgJ
FGF55_10765	COG5280	Phage tail tape measure protein TP901
FGF55_10765	COG3953	SLT domain
FGF55_10870	COG1595	DNA-templated transcription, initiation
FGF55_10895	COG4570	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC
FGF55_10900	COG1484	DNA-dependent DNA replication
FGF55_10905	COG3935	DnaD domain protein
FGF55_10945	COG3645	SOS response
FGF55_10945	COG3646	Phage regulatory protein
FGF55_10960	COG3620	sequence-specific DNA binding
FGF55_10965	COG0582	viral genome integration into host DNA
FGF55_10970	COG2233	PERMEase
FGF55_10980	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
FGF55_10985	COG1199	ATP-dependent helicase activity
FGF55_11000	COG0116	Belongs to the methyltransferase superfamily
FGF55_11030	COG3359	exonuclease
FGF55_11035	COG1205	dead DEAH box helicase
FGF55_11035	COG1111	helicase
FGF55_11040	COG2190	(PTS) system
FGF55_11045	COG0071	Belongs to the small heat shock protein (HSP20) family
FGF55_11085	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
FGF55_11085	COG4499	WXG100 protein secretion system (Wss), protein YukC
FGF55_11095	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
FGF55_11100	COG3935	DnaD domain protein
FGF55_11110	COG0436	Aminotransferase
FGF55_11115	COG5353	protein conserved in bacteria
FGF55_11125	COG1199	ATP-dependent helicase activity
FGF55_11125	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
FGF55_11155	COG0438	transferase activity, transferring glycosyl groups
FGF55_11160	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
FGF55_11175	COG1694	Mazg nucleotide pyrophosphohydrolase
FGF55_11180	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
FGF55_11185	COG2140	Oxalate decarboxylase
FGF55_11195	COG4347	Protein of unknown function (DUF1405)
FGF55_11200	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
FGF55_11200	COG2010	Cytochrome c
FGF55_11205	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
FGF55_11210	COG0723	plastoquinol--plastocyanin reductase activity
FGF55_11225	COG0457	Tetratricopeptide repeat
FGF55_11235	COG0287	Prephenate dehydrogenase
FGF55_11270	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
FGF55_11275	COG4401	Chorismate mutase type I
FGF55_11290	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
FGF55_11295	COG0105	UTP biosynthetic process
FGF55_11300	COG0142	geranyltranstransferase activity
FGF55_11310	COG0142	geranyltranstransferase activity
FGF55_11325	COG0776	regulation of translation
FGF55_11330	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
FGF55_11370	COG0539	negative regulation of cytoplasmic translation
FGF55_11380	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
FGF55_11385	COG2959	enzyme of heme biosynthesis
FGF55_11390	COG3409	Peptidoglycan-binding domain 1 protein
FGF55_11390	COG3773	Cell wall hydrolase
FGF55_11395	COG2339	peptidase activity
FGF55_11400	COG0492	ferredoxin-NADP+ reductase activity
FGF55_11405	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
FGF55_11410	COG4862	establishment of competence for transformation
FGF55_11415	COG1408	metallophosphoesterase
FGF55_11425	COG1388	LysM domain
FGF55_11430	COG1266	CAAX protease self-immunity
FGF55_11435	COG0514	ATP-dependent DNA helicase (RecQ)
FGF55_11440	COG4955	Helix-turn-helix domain
FGF55_11445	COG1141	Ferredoxin
FGF55_11450	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
FGF55_11455	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
FGF55_11465	COG1595	DNA-templated transcription, initiation
FGF55_11470	COG5002	protein histidine kinase activity
FGF55_11475	COG0745	RESPONSE REGULATOR receiver
FGF55_11480	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
FGF55_11485	COG1333	cytochrome c biogenesis protein
FGF55_11490	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FGF55_11495	COG1187	pseudouridine synthase activity
FGF55_11500	COG0700	Nucleoside recognition
FGF55_11505	COG2715	membrane protein required for spore maturation
FGF55_11510	COG1686	Belongs to the peptidase S11 family
FGF55_11535	COG1547	Domain of unknown function (DUF309)
FGF55_11545	COG0456	acetyltransferase
FGF55_11560	COG0307	riboflavin synthase, alpha
FGF55_11565	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
FGF55_11565	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
FGF55_11575	COG0681	Belongs to the peptidase S26 family
FGF55_11585	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
FGF55_11590	COG4086	secreted protein
FGF55_11595	COG0019	diaminopimelate decarboxylase activity
FGF55_11600	COG0697	spore germination
FGF55_11615	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
FGF55_11635	COG1191	sigma factor activity
FGF55_11645	COG1366	Belongs to the anti-sigma-factor antagonist family
FGF55_11650	COG1686	Belongs to the peptidase S11 family
FGF55_11655	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
FGF55_11660	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
FGF55_11665	COG4974	Belongs to the 'phage' integrase family
FGF55_11675	COG0735	belongs to the Fur family
FGF55_11680	COG1300	Membrane
FGF55_11695	COG0281	malic enzyme
FGF55_11700	COG1757	Na H antiporter
FGF55_11705	COG1027	Aspartate ammonia-lyase
FGF55_11710	COG0252	asparaginase activity
FGF55_11715	COG1396	sequence-specific DNA binding
FGF55_11720	COG1379	DNA repair
FGF55_11725	COG0494	nUDIX hydrolase
FGF55_11735	COG0667	Aldo Keto reductase
FGF55_11745	COG1073	alpha beta
FGF55_11755	COG4918	Iron-sulphur cluster biosynthesis
FGF55_11760	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
FGF55_11760	COG0456	acetyltransferase
FGF55_11765	COG2329	Antibiotic biosynthesis monooxygenase
FGF55_11770	COG0456	acetyltransferase
FGF55_11775	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
FGF55_11790	COG0628	permease
FGF55_11800	COG0346	lactoylglutathione lyase activity
FGF55_11810	COG3048	D-serine ammonia-lyase activity
FGF55_11815	COG0300	oxidoreductase activity
FGF55_11820	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FGF55_11825	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
FGF55_11830	COG1024	Enoyl-CoA hydratase
FGF55_11835	COG3425	synthase
FGF55_11840	COG2124	cytochrome p450
FGF55_11845	COG1028	Short-chain dehydrogenase reductase Sdr
FGF55_11845	COG3321	synthase
FGF55_11845	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FGF55_11845	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
FGF55_11845	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FGF55_11850	COG3321	synthase
FGF55_11850	COG1028	Short-chain dehydrogenase reductase Sdr
FGF55_11850	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
FGF55_11850	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FGF55_11850	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FGF55_11855	COG3321	synthase
FGF55_11855	COG0300	oxidoreductase activity
FGF55_11855	COG0318	PFAM AMP-dependent synthetase and ligase
FGF55_11855	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FGF55_11855	COG1028	Short-chain dehydrogenase reductase Sdr
FGF55_11860	COG0300	oxidoreductase activity
FGF55_11860	COG0318	PFAM AMP-dependent synthetase and ligase
FGF55_11860	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FGF55_11860	COG1028	Short-chain dehydrogenase reductase Sdr
FGF55_11860	COG3321	synthase
FGF55_11865	COG1028	Short-chain dehydrogenase reductase Sdr
FGF55_11865	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FGF55_11865	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FGF55_11865	COG3321	synthase
FGF55_11865	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
FGF55_11870	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FGF55_11870	COG0318	PFAM AMP-dependent synthetase and ligase
FGF55_11870	COG0300	oxidoreductase activity
FGF55_11870	COG3321	synthase
FGF55_11870	COG1028	Short-chain dehydrogenase reductase Sdr
FGF55_11875	COG3321	synthase
FGF55_11875	COG1028	Short-chain dehydrogenase reductase Sdr
FGF55_11875	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FGF55_11875	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
FGF55_11875	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FGF55_11880	COG1028	Short-chain dehydrogenase reductase Sdr
FGF55_11885	COG0318	PFAM AMP-dependent synthetase and ligase
FGF55_11900	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
FGF55_11900	COG2070	2-Nitropropane dioxygenase
FGF55_11905	COG0250	Participates in transcription elongation, termination and antitermination
FGF55_11930	COG0596	Alpha beta hydrolase
FGF55_11945	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
FGF55_11950	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
FGF55_11965	COG0706	membrane insertase activity
FGF55_11970	COG2195	Cleaves the N-terminal amino acid of tripeptides
FGF55_11975	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
FGF55_11980	COG0346	lactoylglutathione lyase activity
FGF55_11985	COG1376	ErfK ybiS ycfS ynhG family protein
FGF55_11990	COG4129	membrane
FGF55_11995	COG1126	abc transporter atp-binding protein
FGF55_12000	COG0765	amino acid transport
FGF55_12005	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FGF55_12015	COG1597	lipid kinase activity
FGF55_12020	COG0508	dehydrogenase complex catalyzes the overall conversion of
FGF55_12025	COG0022	dehydrogenase e1 component
FGF55_12030	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
FGF55_12035	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FGF55_12040	COG3426	butyrate kinase activity
FGF55_12045	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
FGF55_12050	COG0280	phosphate acetyltransferase
FGF55_12055	COG3829	transcription factor binding
FGF55_12055	COG3290	protein histidine kinase activity
FGF55_12065	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
FGF55_12070	COG2079	MmgE PrpD family protein
FGF55_12075	COG0372	Belongs to the citrate synthase family
FGF55_12080	COG1960	acyl-CoA dehydrogenase activity
FGF55_12085	COG1250	3-hydroxyacyl-CoA dehydrogenase
FGF55_12090	COG0183	Belongs to the thiolase family
FGF55_12095	COG0584	glycerophosphoryl diester phosphodiesterase
FGF55_12100	COG0860	N-Acetylmuramoyl-L-alanine amidase
FGF55_12120	COG1902	pentaerythritol trinitrate reductase activity
FGF55_12135	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
FGF55_12140	COG0745	RESPONSE REGULATOR receiver
FGF55_12145	COG0750	zinc metalloprotease
FGF55_12150	COG0497	DNA recombination
FGF55_12160	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
FGF55_12170	COG0142	geranyltranstransferase activity
FGF55_12180	COG1570	exodeoxyribonuclease VII activity
FGF55_12195	COG1302	Protein conserved in bacteria
FGF55_12200	COG0439	Biotin carboxylase
FGF55_12205	COG0511	ligase activity, forming carbon-carbon bonds
FGF55_12245	COG3854	ATPases associated with a variety of cellular activities
FGF55_12260	COG0006	proline dipeptidase activity
FGF55_12270	COG3872	metal-dependent enzyme
FGF55_12280	COG1752	Esterase of the alpha-beta hydrolase superfamily
FGF55_12295	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
FGF55_12315	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
FGF55_12330	COG1396	sequence-specific DNA binding
FGF55_12340	COG0681	Belongs to the peptidase S26 family
FGF55_12365	COG4940	Competence protein ComGF
FGF55_12375	COG4970	Tfp pilus assembly protein FimT
FGF55_12380	COG4537	Required for transformation and DNA binding
FGF55_12385	COG1459	type II secretion system
FGF55_12390	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
FGF55_12395	COG0598	Magnesium transport protein CorA
FGF55_12400	COG1253	flavin adenine dinucleotide binding
FGF55_12405	COG1366	Belongs to the anti-sigma-factor antagonist family
FGF55_12415	COG1393	Belongs to the ArsC family
FGF55_12425	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FGF55_12435	COG0011	TIGRFAM Protein of
FGF55_12445	COG2866	Carboxypeptidase
FGF55_12450	COG1940	carbohydrate kinase activity
FGF55_12455	COG4483	Protein conserved in bacteria
FGF55_12460	COG1757	Na H antiporter
FGF55_12470	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
FGF55_12475	COG0267	Belongs to the bacterial ribosomal protein bL33 family
FGF55_12485	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
FGF55_12490	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
FGF55_12495	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
FGF55_12500	COG0581	inorganic phosphate transmembrane transporter activity
FGF55_12505	COG0573	inorganic phosphate transmembrane transporter activity
FGF55_12510	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
FGF55_12520	COG0477	Major facilitator Superfamily
FGF55_12525	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
FGF55_12530	COG2839	Protein conserved in bacteria
FGF55_12535	COG5521	maltodextrose utilization protein MalA
FGF55_12540	COG1388	LysM domain
FGF55_12550	COG4709	membrane
FGF55_12555	COG5663	Belongs to the 5'(3')-deoxyribonucleotidase family
FGF55_12560	COG0735	belongs to the Fur family
FGF55_12565	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
FGF55_12580	COG0513	Belongs to the DEAD box helicase family
FGF55_12595	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
FGF55_12600	COG2384	SAM-dependent methyltransferase
FGF55_12605	COG2010	Cytochrome c
FGF55_12610	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
FGF55_12615	COG0358	DNA primase activity
FGF55_12630	COG0517	IMP dehydrogenase activity
FGF55_12635	COG0751	glycine-tRNA ligase activity
FGF55_12655	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
FGF55_12660	COG0295	cytidine deaminase activity
FGF55_12665	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
FGF55_12675	COG1480	7TM receptor with intracellular HD hydrolase
FGF55_12680	COG1702	phosphate starvation-inducible protein PhoH
FGF55_12685	COG0561	phosphatase activity
FGF55_12700	COG4864	UPF0365 protein
FGF55_12705	COG1030	water channel activity
FGF55_12710	COG1610	YqeY-like protein
FGF55_12715	COG0828	Belongs to the bacterial ribosomal protein bS21 family
FGF55_12720	COG1283	sodium-dependent phosphate transmembrane transporter activity
FGF55_12725	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
FGF55_12730	COG1385	rRNA (uridine-N3-)-methyltransferase activity
FGF55_12760	COG0635	Involved in the biosynthesis of porphyrin-containing compound
FGF55_12775	COG0860	N-Acetylmuramoyl-L-alanine amidase
FGF55_12790	COG1466	dna polymerase III delta subunit
FGF55_12805	COG2333	competence protein COMEC
FGF55_12805	COG0658	competence protein
FGF55_12810	COG2131	deaminase
FGF55_12815	COG1555	photosystem II stabilization
FGF55_12815	COG1596	polysaccharide export
FGF55_12820	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
FGF55_12825	COG2226	methyltransferase
FGF55_12830	COG0799	negative regulation of ribosome biogenesis
FGF55_12835	COG1713	HD superfamily hydrolase involved in NAD metabolism
FGF55_12845	COG1534	Rna-binding protein
FGF55_12850	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
FGF55_12855	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
FGF55_12860	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
FGF55_12870	COG2755	lipolytic protein G-D-S-L family
FGF55_12875	COG0726	polysaccharide deacetylase
FGF55_12880	COG0398	Pfam SNARE associated Golgi protein
FGF55_12920	COG3708	Transcriptional regulator
FGF55_12920	COG2207	Transcriptional regulator
FGF55_12925	COG0583	DNA-binding transcription factor activity
FGF55_12940	COG5002	protein histidine kinase activity
FGF55_12940	COG0642	Histidine kinase
FGF55_12945	COG0745	RESPONSE REGULATOR receiver
FGF55_12950	COG2311	Membrane
FGF55_12960	COG0454	-acetyltransferase
FGF55_12965	COG0563	adenylate kinase activity
FGF55_12975	COG2814	Major facilitator Superfamily
FGF55_12985	COG0456	acetyltransferase
FGF55_12990	COG2318	DinB family
FGF55_13000	COG0561	phosphatase activity
FGF55_13005	COG0561	phosphatase activity
FGF55_13015	COG1482	cell wall glycoprotein biosynthetic process
FGF55_13020	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
FGF55_13020	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
FGF55_13020	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
FGF55_13025	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
FGF55_13025	COG3711	transcriptional antiterminator
FGF55_13035	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
FGF55_13040	COG0583	DNA-binding transcription factor activity
FGF55_13045	COG2814	Major facilitator Superfamily
FGF55_13050	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
FGF55_13050	COG2124	cytochrome p450
FGF55_13055	COG1309	transcriptional regulator
FGF55_13060	COG2226	methyltransferase
FGF55_13075	COG2116	formate transmembrane transporter activity
FGF55_13080	COG5609	conserved protein (DUF2294)
FGF55_13085	COG3383	formate dehydrogenase (NAD+) activity
FGF55_13090	COG2427	Protein of unknown function (DUF1641)
FGF55_13100	COG0626	cystathionine gamma-synthase activity
FGF55_13105	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
FGF55_13130	COG0768	penicillin binding
FGF55_13160	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
FGF55_13175	COG4472	Bacterial protein of unknown function (DUF965)
FGF55_13185	COG0628	permease
FGF55_13190	COG1126	abc transporter atp-binding protein
FGF55_13195	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FGF55_13200	COG0765	amino acid transport
FGF55_13205	COG0765	amino acid transport
FGF55_13220	COG3881	PFAM PRC-barrel domain
FGF55_13225	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
FGF55_13230	COG0457	Tetratricopeptide repeat
FGF55_13240	COG1104	cysteine desulfurase activity
FGF55_13245	COG1959	2 iron, 2 sulfur cluster binding
FGF55_13250	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
FGF55_13255	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
FGF55_13275	COG4991	sh3 domain protein
FGF55_13275	COG3103	Sh3 type 3 domain protein
FGF55_13275	COG0860	N-Acetylmuramoyl-L-alanine amidase
FGF55_13285	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
FGF55_13295	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
FGF55_13295	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
FGF55_13300	COG5416	Lipopolysaccharide assembly protein A domain
FGF55_13305	COG0490	domain, Protein
FGF55_13310	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
FGF55_13310	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
FGF55_13320	COG2244	polysaccharide biosynthetic process
FGF55_13325	COG2323	membrane
FGF55_13335	COG1862	Preprotein translocase
FGF55_13380	COG1388	LysM domain
FGF55_13390	COG0157	Belongs to the NadC ModD family
FGF55_13395	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
FGF55_13400	COG1104	cysteine desulfurase activity
FGF55_13405	COG1827	regulation of RNA biosynthetic process
FGF55_13410	COG0077	Prephenate dehydratase
FGF55_13425	COG3290	protein histidine kinase activity
FGF55_13430	COG0211	Belongs to the bacterial ribosomal protein bL27 family
FGF55_13435	COG2868	ribosomal protein
FGF55_13445	COG1994	Peptidase M50
FGF55_13450	COG0739	heme binding
FGF55_13455	COG2894	cell division
FGF55_13465	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
FGF55_13470	COG1792	Involved in formation and maintenance of cell shape
FGF55_13475	COG1077	Cell shape determining protein MreB Mrl
FGF55_13495	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
FGF55_13500	COG0285	dihydrofolate synthase activity
FGF55_13505	COG0525	valine-tRNA ligase activity
FGF55_13515	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
FGF55_13520	COG1388	LysM domain
FGF55_13530	COG0113	porphobilinogen synthase activity
FGF55_13535	COG1587	Uroporphyrinogen-III synthase
FGF55_13545	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
FGF55_13565	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
FGF55_13570	COG0470	DNA polymerase III
FGF55_13570	COG1067	ATP-dependent peptidase activity
FGF55_13585	COG1477	protein flavinylation
FGF55_13585	COG0457	Tetratricopeptide repeat
FGF55_13600	COG0473	3-isopropylmalate dehydrogenase activity
FGF55_13615	COG0440	acetolactate synthase activity
FGF55_13620	COG0028	Belongs to the TPP enzyme family
FGF55_13650	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
FGF55_13675	COG0622	Phosphoesterase
FGF55_13680	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
FGF55_13690	COG5401	PFAM Sporulation and spore germination
FGF55_13700	COG1846	Transcriptional regulator
FGF55_13705	COG2197	response regulator
FGF55_13710	COG0824	Thioesterase
FGF55_13715	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
FGF55_13720	COG1053	succinate dehydrogenase
FGF55_13725	COG2009	succinate dehydrogenase
FGF55_13730	COG1719	4-vinyl reductase, 4VR
FGF55_13735	COG0527	aspartate kinase activity
FGF55_13750	COG3118	belongs to the thioredoxin family
FGF55_13755	COG3534	alpha-L-arabinofuranosidase
FGF55_13760	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
FGF55_13765	COG2086	electron transfer activity
FGF55_13770	COG1024	Enoyl-CoA hydratase
FGF55_13775	COG1309	transcriptional regulator
FGF55_13780	COG0318	PFAM AMP-dependent synthetase and ligase
FGF55_13790	COG3766	membrane
FGF55_13800	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
FGF55_13800	COG1796	DNA polymerase
FGF55_13805	COG1286	toxin biosynthetic process
FGF55_13820	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FGF55_13820	COG0072	phenylalanine-tRNA ligase activity
FGF55_13825	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
FGF55_13830	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
FGF55_13840	COG3835	regulator
FGF55_13845	COG0277	FAD linked oxidase domain protein
FGF55_13850	COG0247	lactate metabolic process
FGF55_13855	COG1966	Carbon starvation protein
FGF55_13860	COG3534	alpha-L-arabinofuranosidase
FGF55_13865	COG0395	ABC-type sugar transport system, permease component
FGF55_13870	COG1175	transmembrane transport
FGF55_13875	COG1653	transport
FGF55_13885	COG0647	UMP catabolic process
FGF55_13890	COG0235	Class ii aldolase
FGF55_13895	COG1069	ribulokinase activity
FGF55_13900	COG2160	L-arabinose isomerase activity
FGF55_13905	COG3507	Belongs to the glycosyl hydrolase 43 family
FGF55_13910	COG1363	Peptidase, m42
FGF55_13920	COG3326	Membrane
FGF55_13935	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
FGF55_13940	COG1346	cytolysis
FGF55_13945	COG1380	Effector of murein hydrolase LrgA
FGF55_13950	COG3279	Response regulator of the LytR AlgR family
FGF55_13955	COG3275	phosphorelay sensor kinase activity
FGF55_13975	COG0398	Pfam SNARE associated Golgi protein
FGF55_13980	COG1484	DNA-dependent DNA replication
FGF55_13985	COG3611	Membrane attachment protein
FGF55_14000	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
FGF55_14005	COG1733	regulation of RNA biosynthetic process
FGF55_14010	COG2814	Major facilitator Superfamily
FGF55_14015	COG0656	L-ascorbic acid biosynthetic process
FGF55_14020	COG0237	dephospho-CoA kinase activity
FGF55_14025	COG1971	Probably functions as a manganese efflux pump
FGF55_14030	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
FGF55_14035	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
FGF55_14035	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
FGF55_14040	COG5002	protein histidine kinase activity
FGF55_14045	COG0745	RESPONSE REGULATOR receiver
FGF55_14055	COG0538	isocitrate dehydrogenase activity
FGF55_14060	COG0372	Belongs to the citrate synthase family
FGF55_14065	COG0457	Tetratricopeptide repeat
FGF55_14095	COG0628	permease
FGF55_14100	COG3030	protein affecting phage T7 exclusion by the F plasmid
FGF55_14105	COG0469	pyruvate kinase activity
FGF55_14125	COG0281	malic enzyme
FGF55_14130	COG0587	DNA-directed DNA polymerase activity
FGF55_14150	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
FGF55_14160	COG4109	DRTGG domain
FGF55_14170	COG1028	Short-chain dehydrogenase reductase Sdr
FGF55_14185	COG0521	Mo-molybdopterin cofactor biosynthetic process
FGF55_14195	COG0827	DNA restriction-modification system
FGF55_14200	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
FGF55_14205	COG3874	Sporulation protein YtfJ
FGF55_14215	COG1714	RDD family
FGF55_14220	COG0616	signal peptide processing
FGF55_14225	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
FGF55_14230	COG1574	metal-dependent hydrolase with the TIM-barrel fold
FGF55_14235	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FGF55_14250	COG1104	cysteine desulfurase activity
FGF55_14255	COG1114	Component of the transport system for branched-chain amino acids
FGF55_14265	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
FGF55_14270	COG1309	transcriptional regulator
FGF55_14275	COG1956	GAF domain-containing protein
FGF55_14280	COG2199	diguanylate cyclase activity
FGF55_14280	COG2203	Gaf domain
FGF55_14295	COG1012	belongs to the aldehyde dehydrogenase family
FGF55_14300	COG4282	regulation of fungal-type cell wall biogenesis
FGF55_14350	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
FGF55_14350	COG1017	nitric oxide dioxygenase activity
FGF55_14360	COG0693	protein deglycase activity
FGF55_14375	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
FGF55_14380	COG1378	Sugar-specific transcriptional regulator TrmB
FGF55_14405	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FGF55_14410	COG0454	-acetyltransferase
FGF55_14415	COG0517	IMP dehydrogenase activity
FGF55_14420	COG0123	including yeast histone deacetylase and acetoin utilization protein
FGF55_14425	COG1360	Flagellar Motor Protein
FGF55_14430	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
FGF55_14435	COG1609	Transcriptional regulator
FGF55_14440	COG1605	Chorismate mutase
FGF55_14440	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
FGF55_14445	COG3118	belongs to the thioredoxin family
FGF55_14450	COG4980	gas vesicle protein
FGF55_14455	COG4768	protein containing a divergent version of the methyl-accepting chemotaxis-like domain
FGF55_14465	COG1674	ftsk spoiiie
FGF55_14470	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FGF55_14480	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FGF55_14500	COG1363	Peptidase, m42
FGF55_14505	COG5584	Small secreted protein
FGF55_14510	COG0281	malic enzyme
FGF55_14515	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FGF55_14530	COG0510	thiamine kinase activity
FGF55_14535	COG1597	lipid kinase activity
FGF55_14545	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
FGF55_14550	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
FGF55_14555	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
FGF55_14560	COG2252	PERMEase
FGF55_14565	COG4473	ABC transporter
FGF55_14570	COG1131	(ABC) transporter
FGF55_14575	COG1349	DNA-binding transcription factor activity
FGF55_14580	COG1187	pseudouridine synthase activity
FGF55_14585	COG2244	polysaccharide biosynthetic process
FGF55_14590	COG2081	HI0933 family
FGF55_14600	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
FGF55_14630	COG1486	melibiose metabolic process
FGF55_14640	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
FGF55_14655	COG2202	Pas domain
FGF55_14655	COG1366	Belongs to the anti-sigma-factor antagonist family
FGF55_14660	COG2814	Major facilitator Superfamily
FGF55_14665	COG5522	Integral membrane protein (intg_mem_TP0381)
FGF55_14670	COG0577	efflux transmembrane transporter activity
FGF55_14675	COG1136	(ABC) transporter
FGF55_14680	COG2205	protein histidine kinase activity
FGF55_14685	COG0745	RESPONSE REGULATOR receiver
FGF55_14690	COG0577	efflux transmembrane transporter activity
FGF55_14695	COG1136	(ABC) transporter
FGF55_14715	COG1131	(ABC) transporter
FGF55_14720	COG1725	Transcriptional regulator
FGF55_14730	COG1242	4 iron, 4 sulfur cluster binding
FGF55_14735	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
FGF55_14745	COG0584	glycerophosphoryl diester phosphodiesterase
FGF55_14755	COG2267	carboxylic ester hydrolase activity
FGF55_14760	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
FGF55_14765	COG1113	amino acid transport
FGF55_14770	COG0367	asparagine synthase
FGF55_14790	COG1506	peptidase
FGF55_14795	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
FGF55_14800	COG1116	anion transmembrane transporter activity
FGF55_14805	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FGF55_14810	COG0494	nUDIX hydrolase
FGF55_14815	COG4824	toxin secretion phage lysis holin
FGF55_14820	COG0783	Belongs to the Dps family
FGF55_14845	COG0288	reversible hydration of carbon dioxide
FGF55_14855	COG1271	oxidase subunit
FGF55_14860	COG1294	oxidase, subunit
FGF55_14870	COG1108	ABC-type Mn2 Zn2 transport systems permease components
FGF55_14875	COG1321	iron dependent repressor
FGF55_14875	COG1108	ABC-type Mn2 Zn2 transport systems permease components
FGF55_14880	COG1121	(ABC) transporter
FGF55_14885	COG0803	Belongs to the bacterial solute-binding protein 9 family
FGF55_14890	COG4948	Mandelate Racemase Muconate Lactonizing
FGF55_14900	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
FGF55_14905	COG0596	Alpha beta hydrolase
FGF55_14915	COG1169	isochorismate synthase
FGF55_14920	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
FGF55_14925	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
FGF55_15050	COG3859	Proton-coupled thiamine transporter YuaJ
FGF55_15055	COG2268	Band 7 protein
FGF55_15060	COG1585	Membrane protein implicated in regulation of membrane protease activity
FGF55_15065	COG2318	DinB family
FGF55_15075	COG1454	alcohol dehydrogenase
FGF55_15085	COG1510	regulation of RNA biosynthetic process
FGF55_15095	COG0569	domain protein
FGF55_15100	COG1705	Flagellar rod assembly protein muramidase FlgJ
FGF55_15105	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
FGF55_15105	COG1017	nitric oxide dioxygenase activity
FGF55_15130	COG0628	permease
FGF55_15135	COG0673	inositol 2-dehydrogenase activity
FGF55_15140	COG0693	protein deglycase activity
FGF55_15145	COG0840	transmembrane signaling receptor activity
FGF55_15150	COG0840	transmembrane signaling receptor activity
FGF55_15155	COG0840	transmembrane signaling receptor activity
FGF55_15160	COG0840	transmembrane signaling receptor activity
FGF55_15175	COG2070	2-Nitropropane dioxygenase
FGF55_15180	COG0432	Pfam Uncharacterised protein family UPF0047
FGF55_15185	COG0366	Alpha amylase catalytic
FGF55_15190	COG1253	flavin adenine dinucleotide binding
FGF55_15195	COG2738	Putative neutral zinc metallopeptidase
FGF55_15210	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
FGF55_15240	COG1335	isochorismatase
FGF55_15245	COG1979	alcohol dehydrogenase
FGF55_15250	COG1979	alcohol dehydrogenase
FGF55_15255	COG2155	Conserved Protein
FGF55_15260	COG1098	S1 RNA binding domain
FGF55_15265	COG0436	Aminotransferase
FGF55_15270	COG1522	sequence-specific DNA binding
FGF55_15275	COG2267	carboxylic ester hydrolase activity
FGF55_15285	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
FGF55_15290	COG2205	protein histidine kinase activity
FGF55_15300	COG5018	Exonuclease
FGF55_15305	COG2814	Major facilitator Superfamily
FGF55_15310	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
FGF55_15315	COG3011	Protein conserved in bacteria
FGF55_15325	COG3290	protein histidine kinase activity
FGF55_15330	COG4565	transcriptional regulatory protein
FGF55_15360	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
FGF55_15360	COG2111	Na H antiporter
FGF55_15365	COG2111	Na H antiporter
FGF55_15370	COG1006	Multisubunit Na H antiporter MnhC subunit
FGF55_15375	COG0651	ATP synthesis coupled electron transport
FGF55_15380	COG1863	multisubunit Na H antiporter MnhE subunit
FGF55_15385	COG2212	antiporter activity
FGF55_15390	COG1320	monovalent cation:proton antiporter activity
FGF55_15395	COG2050	protein possibly involved in aromatic compounds catabolism
FGF55_15400	COG2197	response regulator
FGF55_15405	COG4585	Histidine kinase
FGF55_15415	COG0142	geranyltranstransferase activity
FGF55_15435	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
FGF55_15440	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
FGF55_15445	COG1335	isochorismatase
FGF55_15450	COG5506	Protein of unknown function (DUF1694)
FGF55_15465	COG0628	permease
FGF55_15475	COG1418	mRNA catabolic process
FGF55_15480	COG1028	Short-chain dehydrogenase reductase Sdr
FGF55_15490	COG1511	domain protein
FGF55_15495	COG1674	ftsk spoiiie
FGF55_15495	COG0433	COG0433 Predicted ATPase
FGF55_15500	COG4499	WXG100 protein secretion system (Wss), protein YukC
FGF55_15505	COG5417	Belongs to the EsaB family
FGF55_15510	COG4842	Belongs to the WXG100 family
FGF55_15515	COG2508	Transcriptional regulator
FGF55_15515	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
FGF55_15520	COG0686	Belongs to the AlaDH PNT family
FGF55_15525	COG5634	Uncharacterized conserved protein (DUF2278)
FGF55_15530	COG3251	PFAM MbtH domain protein
FGF55_15535	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FGF55_15540	COG3433	isochorismatase activity
FGF55_15540	COG1535	isochorismatase
FGF55_15545	COG1021	2,3-dihydroxybenzoate-AMP ligase
FGF55_15550	COG1169	isochorismate synthase
FGF55_15555	COG1028	Short-chain dehydrogenase reductase Sdr
FGF55_15560	COG2819	hydrolase of the alpha beta superfamily
FGF55_15565	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
FGF55_15570	COG1268	BioY protein
FGF55_15575	COG2056	Na+-H+ antiporter family
FGF55_15585	COG1963	PFAM Acid phosphatase vanadium-dependent haloperoxidase related
FGF55_15590	COG3584	3D domain protein
FGF55_15605	COG1252	NADH dehydrogenase
FGF55_15635	COG1131	(ABC) transporter
FGF55_15655	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FGF55_15660	COG3967	Belongs to the short-chain dehydrogenases reductases (SDR) family
FGF55_15675	COG0316	Belongs to the HesB IscA family
FGF55_15685	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
FGF55_15695	COG1252	NADH dehydrogenase
FGF55_15700	COG4837	Protein of unknown function (DUF1462)
FGF55_15705	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
FGF55_15710	COG4946	Tricorn protease homolog
FGF55_15710	COG1506	peptidase
FGF55_15710	COG0823	Involved in the tonB-independent uptake of proteins
FGF55_15720	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
FGF55_15725	COG0460	homoserine dehydrogenase
FGF55_15730	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
FGF55_15735	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
FGF55_15740	COG0647	UMP catabolic process
FGF55_15745	COG2445	Protein of unknown function DUF86
FGF55_15750	COG4470	Protein conserved in bacteria
FGF55_15765	COG0739	heme binding
FGF55_15775	COG0737	Belongs to the 5'-nucleotidase family
FGF55_15780	COG0730	response to heat
FGF55_15785	COG1801	Protein of unknown function DUF72
FGF55_15800	COG2508	Transcriptional regulator
FGF55_15805	COG0457	Tetratricopeptide repeat
FGF55_15820	COG2814	Major facilitator Superfamily
FGF55_15825	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
FGF55_15830	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
FGF55_15835	COG2356	endonuclease I
FGF55_15840	COG3842	ATPase activity
FGF55_15845	COG2188	Transcriptional regulator
FGF55_15850	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FGF55_15855	COG0395	ABC-type sugar transport system, permease component
FGF55_15860	COG1175	transmembrane transport
FGF55_15865	COG1653	transport
FGF55_15870	COG2222	sugar isomerase
FGF55_15875	COG0789	Transcriptional regulator
FGF55_15900	COG0322	excinuclease ABC activity
FGF55_15905	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FGF55_15930	COG3409	Peptidoglycan-binding domain 1 protein
FGF55_15935	COG0719	Fe-S assembly protein
FGF55_15940	COG0822	iron-sulfur transferase activity
FGF55_15945	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
FGF55_15950	COG0719	Fe-S assembly protein
FGF55_15955	COG0396	ATPase activity
FGF55_15965	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FGF55_15970	COG1464	Belongs to the NlpA lipoprotein family
FGF55_15975	COG2011	ABC-type metal ion transport system permease component
FGF55_15980	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
FGF55_15990	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FGF55_15995	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
FGF55_16010	COG1393	Belongs to the ArsC family
FGF55_16015	COG1960	acyl-CoA dehydrogenase activity
FGF55_16020	COG0183	Belongs to the thiolase family
FGF55_16025	COG1250	3-hydroxyacyl-CoA dehydrogenase
FGF55_16025	COG1024	Enoyl-CoA hydratase
FGF55_16045	COG5577	PFAM Coat F domain
FGF55_16050	COG1846	Transcriptional regulator
FGF55_16055	COG0477	Major facilitator Superfamily
FGF55_16060	COG0583	DNA-binding transcription factor activity
FGF55_16080	COG1120	ATPase activity
FGF55_16095	COG1028	Short-chain dehydrogenase reductase Sdr
FGF55_16100	COG0783	Belongs to the Dps family
FGF55_16105	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
FGF55_16115	COG0745	RESPONSE REGULATOR receiver
FGF55_16120	COG2205	protein histidine kinase activity
FGF55_16120	COG2770	Histidine kinase
FGF55_16130	COG1309	transcriptional regulator
FGF55_16135	COG0114	fumarate hydratase activity
FGF55_16145	COG0697	spore germination
FGF55_16150	COG0814	amino acid
FGF55_16160	COG2197	response regulator
FGF55_16165	COG4585	Histidine kinase
FGF55_16170	COG4758	membrane
FGF55_16175	COG3595	metallopeptidase activity
FGF55_16180	COG1842	Phage shock protein A
FGF55_16185	COG4758	membrane
FGF55_16190	COG2814	Major facilitator Superfamily
FGF55_16195	COG2096	Adenosyltransferase
FGF55_16200	COG1120	ATPase activity
FGF55_16205	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FGF55_16210	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
FGF55_16215	COG1028	Short-chain dehydrogenase reductase Sdr
FGF55_16220	COG3386	PFAM SMP-30 Gluconolaconase
FGF55_16225	COG2205	protein histidine kinase activity
FGF55_16230	COG0745	RESPONSE REGULATOR receiver
FGF55_16240	COG1191	sigma factor activity
FGF55_16250	COG2140	Oxalate decarboxylase
FGF55_16260	COG1120	ATPase activity
FGF55_16265	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FGF55_16270	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FGF55_16275	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
FGF55_16280	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
FGF55_16285	COG0531	amino acid
FGF55_16300	COG1988	membrane-bound metal-dependent
FGF55_16305	COG1368	sulfuric ester hydrolase activity
FGF55_16310	COG1910	domain protein
FGF55_16315	COG0725	ABC transporter, periplasmic molybdate-binding protein
FGF55_16320	COG4149	molybdate abc transporter
FGF55_16325	COG2197	response regulator
FGF55_16330	COG3850	Histidine kinase
FGF55_16335	COG1131	(ABC) transporter
FGF55_16345	COG0842	Transport permease protein
FGF55_16350	COG0656	L-ascorbic acid biosynthetic process
FGF55_16375	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
FGF55_16380	COG3973	AAA domain
FGF55_16385	COG2860	membrane
FGF55_16395	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
FGF55_16400	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
FGF55_16405	COG2217	Heavy metal translocating P-type atpase
FGF55_16410	COG2217	Heavy metal translocating P-type atpase
FGF55_16415	COG2608	mercury ion transmembrane transporter activity
FGF55_16420	COG1937	Protein conserved in bacteria
FGF55_16425	COG0673	inositol 2-dehydrogenase activity
FGF55_16435	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FGF55_16440	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
FGF55_16445	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FGF55_16450	COG1126	abc transporter atp-binding protein
FGF55_16455	COG0765	amino acid transport
FGF55_16460	COG0765	amino acid transport
FGF55_16465	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FGF55_16470	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FGF55_16475	COG0454	-acetyltransferase
FGF55_16480	COG0583	DNA-binding transcription factor activity
FGF55_16485	COG1028	Short-chain dehydrogenase reductase Sdr
FGF55_16490	COG2732	(Barnase) inhibitor
FGF55_16500	COG2732	(Barnase) inhibitor
FGF55_16515	COG0557	exoribonuclease II activity
FGF55_16520	COG1647	Serine aminopeptidase, S33
FGF55_16525	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
FGF55_16530	COG1476	TRANSCRIPTIONal
FGF55_16535	COG1396	sequence-specific DNA binding
FGF55_16540	COG1396	sequence-specific DNA binding
FGF55_16545	COG1733	regulation of RNA biosynthetic process
FGF55_16575	COG1174	glycine betaine transport
FGF55_16580	COG1732	Glycine betaine
FGF55_16585	COG1174	glycine betaine transport
FGF55_16590	COG1125	glycine betaine transport
FGF55_16590	COG0517	IMP dehydrogenase activity
FGF55_16595	COG1510	regulation of RNA biosynthetic process
FGF55_16600	COG1174	glycine betaine transport
FGF55_16605	COG1732	Glycine betaine
FGF55_16610	COG1174	glycine betaine transport
FGF55_16615	COG0517	IMP dehydrogenase activity
FGF55_16615	COG1125	glycine betaine transport
FGF55_16620	COG1510	regulation of RNA biosynthetic process
FGF55_16625	COG2095	MarC family integral membrane protein
FGF55_16630	COG3064	Membrane
FGF55_16635	COG4640	response to antibiotic
FGF55_16640	COG0456	acetyltransferase
FGF55_16660	COG0126	phosphoglycerate kinase activity
FGF55_16670	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
FGF55_16675	COG2390	Transcriptional regulator
FGF55_16680	COG2814	Major facilitator Superfamily
FGF55_16685	COG1609	Transcriptional regulator
FGF55_16690	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FGF55_16695	COG0583	DNA-binding transcription factor activity
FGF55_16700	COG0697	spore germination
FGF55_16705	COG1113	amino acid transport
FGF55_16710	COG1737	Transcriptional regulator
FGF55_16715	COG1070	Carbohydrate kinase
FGF55_16750	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FGF55_16755	COG2186	Transcriptional regulator
FGF55_16760	COG1620	l-lactate permease
FGF55_16765	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
FGF55_16775	COG5039	Polysaccharide pyruvyl transferase
FGF55_16780	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
FGF55_16785	COG0110	maltose O-acetyltransferase activity
FGF55_16790	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
FGF55_16795	COG2244	polysaccharide biosynthetic process
FGF55_16800	COG1216	Glycosyl transferase, family 2
FGF55_16805	COG5039	Polysaccharide pyruvyl transferase
FGF55_16810	COG1216	Glycosyl transferase, family 2
FGF55_16820	COG0438	transferase activity, transferring glycosyl groups
FGF55_16825	COG1215	transferase activity, transferring glycosyl groups
FGF55_16830	COG0438	transferase activity, transferring glycosyl groups
FGF55_16835	COG1086	Polysaccharide biosynthesis protein
FGF55_16840	COG0489	protein tyrosine kinase activity
FGF55_16845	COG3944	biosynthesis protein
FGF55_16850	COG1396	sequence-specific DNA binding
FGF55_16855	COG2272	Belongs to the type-B carboxylesterase lipase family
FGF55_16865	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
FGF55_16870	COG2364	Membrane
FGF55_16875	COG0456	acetyltransferase
FGF55_16880	COG3479	Phenolic acid decarboxylase
FGF55_16935	COG2223	nitrite transmembrane transporter activity
FGF55_16940	COG1609	Transcriptional regulator
FGF55_16950	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
FGF55_16955	COG0366	Alpha amylase catalytic
FGF55_16960	COG1554	hydrolase, family 65, central catalytic
FGF55_16965	COG5521	maltodextrose utilization protein MalA
FGF55_16970	COG3833	ABC-type maltose transport systems, permease component
FGF55_16975	COG1175	transmembrane transport
FGF55_16980	COG2182	Extracellular solute-binding protein
FGF55_16985	COG0366	Alpha amylase catalytic
FGF55_16990	COG1609	Transcriptional regulator
FGF55_16995	COG1611	Belongs to the LOG family
FGF55_17000	COG1694	Mazg nucleotide pyrophosphohydrolase
FGF55_17005	COG0659	secondary active sulfate transmembrane transporter activity
FGF55_17010	COG0288	reversible hydration of carbon dioxide
FGF55_17020	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
FGF55_17025	COG4290	ribonuclease
FGF55_17030	COG2162	N-hydroxyarylamine O-acetyltransferase activity
FGF55_17035	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
FGF55_17045	COG0391	Required for morphogenesis under gluconeogenic growth conditions
FGF55_17055	COG1051	belongs to the nudix hydrolase family
FGF55_17060	COG0492	ferredoxin-NADP+ reductase activity
FGF55_17065	COG3883	PFAM NLP P60 protein
FGF55_17065	COG0791	NLP P60 protein
FGF55_17070	COG0457	Tetratricopeptide repeat
FGF55_17075	COG5002	protein histidine kinase activity
FGF55_17080	COG0745	RESPONSE REGULATOR receiver
FGF55_17090	COG1132	(ABC) transporter
FGF55_17095	COG0140	phosphoribosyl-ATP diphosphatase activity
FGF55_17095	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
FGF55_17120	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
FGF55_17135	COG4990	cell redox homeostasis
FGF55_17140	COG0110	maltose O-acetyltransferase activity
FGF55_17160	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
FGF55_17175	COG1309	transcriptional regulator
FGF55_17180	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
FGF55_17185	COG1950	PFAM Membrane protein of
FGF55_17190	COG1983	PspC domain protein
FGF55_17195	COG3595	metallopeptidase activity
FGF55_17210	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
FGF55_17220	COG4897	Protein conserved in bacteria
FGF55_17225	COG3848	Pyruvate phosphate dikinase
FGF55_17225	COG0574	Belongs to the PEP-utilizing enzyme family
FGF55_17230	COG1309	transcriptional regulator
FGF55_17235	COG2814	Major facilitator Superfamily
FGF55_17270	COG1028	Short-chain dehydrogenase reductase Sdr
FGF55_17280	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
FGF55_17290	COG0793	Belongs to the peptidase S41A family
FGF55_17290	COG3409	Peptidoglycan-binding domain 1 protein
FGF55_17295	COG3420	alginic acid biosynthetic process
FGF55_17300	COG2177	Part of the ABC transporter FtsEX involved in
FGF55_17305	COG2884	Cell division ATP-binding protein ftsE
FGF55_17310	COG2010	Cytochrome c
FGF55_17315	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
FGF55_17330	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
FGF55_17345	COG1516	flagellar protein fliS
FGF55_17350	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
FGF55_17355	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
FGF55_17375	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
FGF55_17380	COG4786	Flagellar basal body rod
FGF55_17380	COG1256	bacterial-type flagellum assembly
FGF55_17385	COG3418	PFAM FlgN family protein
FGF55_17390	COG2747	anti-sigma28 factor FlgM
FGF55_17400	COG1040	competence protein
FGF55_17410	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
FGF55_17415	COG1307	EDD domain protein, DegV family
FGF55_17420	COG2197	response regulator
FGF55_17425	COG4585	Histidine kinase
FGF55_17430	COG1739	Uncharacterized protein family UPF0029
FGF55_17435	COG1316	TRANSCRIPTIONal
FGF55_17440	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
FGF55_17445	COG0438	transferase activity, transferring glycosyl groups
FGF55_17450	COG1215	transferase activity, transferring glycosyl groups
FGF55_17455	COG3206	protein involved in exopolysaccharide biosynthesis
FGF55_17460	COG3307	-O-antigen
FGF55_17465	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
FGF55_17470	COG0297	glycogen (starch) synthase activity
FGF55_17470	COG0438	transferase activity, transferring glycosyl groups
FGF55_17475	COG2244	polysaccharide biosynthetic process
FGF55_17485	COG0860	N-Acetylmuramoyl-L-alanine amidase
FGF55_17485	COG2247	cell wall binding repeat
FGF55_17490	COG2247	cell wall binding repeat
FGF55_17490	COG2385	sporulation resulting in formation of a cellular spore
FGF55_17500	COG1316	TRANSCRIPTIONal
FGF55_17505	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
FGF55_17510	COG1210	Utp--glucose-1-phosphate uridylyltransferase
FGF55_17515	COG1134	teichoic acid transport
FGF55_17520	COG1682	transport, permease protein
FGF55_17525	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
FGF55_17535	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
FGF55_17540	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
FGF55_17545	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
FGF55_17550	COG4193	domain, Protein
FGF55_17555	COG1482	cell wall glycoprotein biosynthetic process
FGF55_17560	COG0697	spore germination
FGF55_17565	COG0814	amino acid
FGF55_17575	COG1215	transferase activity, transferring glycosyl groups
FGF55_17580	COG2814	Major facilitator Superfamily
FGF55_17585	COG1316	TRANSCRIPTIONal
FGF55_17590	COG0561	phosphatase activity
FGF55_17595	COG2433	Pfam Transposase IS66
FGF55_17600	COG0791	NLP P60 protein
FGF55_17610	COG2843	Capsule synthesis protein
FGF55_17620	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
FGF55_17630	COG0697	spore germination
FGF55_17635	COG0814	amino acid
FGF55_17645	COG1609	Transcriptional regulator
FGF55_17650	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FGF55_17660	COG1129	ABC transporter
FGF55_17665	COG1172	Belongs to the binding-protein-dependent transport system permease family
FGF55_17670	COG1879	ABC-type sugar transport system periplasmic component
FGF55_17675	COG3103	Sh3 type 3 domain protein
FGF55_17680	COG2249	NAD(P)H dehydrogenase (quinone) activity
FGF55_17685	COG3527	Alpha-acetolactate decarboxylase
FGF55_17690	COG0028	Belongs to the TPP enzyme family
FGF55_17695	COG0583	DNA-binding transcription factor activity
FGF55_17700	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
FGF55_17715	COG5337	Spore coat protein CotH
FGF55_17725	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
FGF55_17735	COG0405	Gamma-glutamyltransferase
FGF55_17740	COG1522	sequence-specific DNA binding
FGF55_17745	COG2059	Chromate
FGF55_17750	COG2059	Chromate
FGF55_17760	COG0655	NAD(P)H dehydrogenase (quinone) activity
FGF55_17765	COG0583	DNA-binding transcription factor activity
FGF55_17800	COG5444	nuclease activity
FGF55_17815	COG3878	Protein conserved in bacteria
FGF55_17820	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
FGF55_17825	COG4464	protein tyrosine phosphatase activity
FGF55_17830	COG0489	protein tyrosine kinase activity
FGF55_17835	COG3944	biosynthesis protein
FGF55_17850	COG4715	Zinc finger, swim domain protein
FGF55_17855	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
FGF55_17860	COG0561	phosphatase activity
FGF55_17865	COG1349	DNA-binding transcription factor activity
FGF55_17870	COG0629	single-stranded DNA binding
FGF55_17895	COG0457	Tetratricopeptide repeat
FGF55_17900	COG4786	Flagellar basal body rod
FGF55_17905	COG4786	Flagellar basal body rod
FGF55_17910	COG1077	Cell shape determining protein MreB Mrl
FGF55_17915	COG1609	Transcriptional regulator
FGF55_17920	COG1846	Transcriptional regulator
FGF55_17925	COG2814	Major facilitator Superfamily
FGF55_17930	COG1953	Uracil, thiamine, allantoin
FGF55_17935	COG0477	Major facilitator Superfamily
FGF55_17940	COG1335	isochorismatase
FGF55_17945	COG0004	ammonium transporteR
FGF55_17950	COG0347	Belongs to the P(II) protein family
FGF55_17955	COG0772	Belongs to the SEDS family
FGF55_17960	COG0671	phosphoesterase, PA-phosphatase related
FGF55_17970	COG0739	heme binding
FGF55_17975	COG1247	-acetyltransferase
FGF55_17990	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FGF55_18000	COG0726	polysaccharide deacetylase
FGF55_18010	COG1959	2 iron, 2 sulfur cluster binding
FGF55_18025	COG0831	urea catabolic process
FGF55_18035	COG1994	Peptidase M50
FGF55_18040	COG0457	Tetratricopeptide repeat
FGF55_18050	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
FGF55_18055	COG2304	oxidoreductase activity
FGF55_18060	COG2304	oxidoreductase activity
FGF55_18065	COG2385	sporulation resulting in formation of a cellular spore
FGF55_18070	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
FGF55_18080	COG4836	Membrane
FGF55_18120	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
FGF55_18150	COG0698	ribose 5-phosphate isomerase
FGF55_18155	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
FGF55_18165	COG0009	L-threonylcarbamoyladenylate synthase
FGF55_18170	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
FGF55_18190	COG2890	protein-(glutamine-N5) methyltransferase activity
FGF55_18195	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
FGF55_18200	COG0346	lactoylglutathione lyase activity
FGF55_18205	COG0789	Transcriptional regulator
FGF55_18210	COG0679	Auxin Efflux Carrier
FGF55_18215	COG0281	malic enzyme
FGF55_18225	COG0254	rRNA binding
FGF55_18230	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
FGF55_18235	COG1494	fructose-1,6-bisphosphatase
FGF55_18240	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
FGF55_18250	COG0191	fructose-bisphosphate aldolase activity
FGF55_18255	COG2204	response regulator
FGF55_18260	COG4821	SIS domain
FGF55_18275	COG2181	nitrate reductase activity
FGF55_18275	COG0247	lactate metabolic process
FGF55_18280	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FGF55_18295	COG1132	(ABC) transporter
FGF55_18300	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FGF55_18310	COG2181	nitrate reductase activity
FGF55_18315	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
FGF55_18320	COG1140	nitrate reductase beta subunit
FGF55_18325	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
FGF55_18330	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
FGF55_18340	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
FGF55_18345	COG2223	nitrite transmembrane transporter activity
FGF55_18355	COG4506	Protein conserved in bacteria
FGF55_18360	COG0457	Tetratricopeptide repeat
FGF55_18405	COG0010	Belongs to the arginase family
FGF55_18410	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
FGF55_18415	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
FGF55_18430	COG1994	Peptidase M50
FGF55_18435	COG1942	4-Oxalocrotonate Tautomerase
FGF55_18440	COG1846	Transcriptional regulator
FGF55_18450	COG0531	amino acid
FGF55_18455	COG3465	dGTPase activity
FGF55_18460	COG1078	dGTPase activity
FGF55_18475	COG1695	Transcriptional regulator
FGF55_18485	COG1131	(ABC) transporter
FGF55_18490	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
FGF55_18520	COG0583	DNA-binding transcription factor activity
FGF55_18525	COG2855	membrane
FGF55_18530	COG0280	phosphate acetyltransferase
FGF55_18540	COG1028	Short-chain dehydrogenase reductase Sdr
FGF55_18545	COG0436	Aminotransferase
FGF55_18575	COG2814	Major facilitator Superfamily
FGF55_18580	COG2814	Major facilitator Superfamily
FGF55_18585	COG0833	amino acid
FGF55_18590	COG4187	Peptidase family M20/M25/M40
FGF55_18595	COG1012	belongs to the aldehyde dehydrogenase family
FGF55_18600	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
FGF55_18605	COG2205	protein histidine kinase activity
FGF55_18610	COG0745	RESPONSE REGULATOR receiver
FGF55_18625	COG1131	(ABC) transporter
FGF55_18630	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
FGF55_18635	COG1091	dTDP-4-dehydrorhamnose reductase activity
FGF55_18640	COG1088	dTDP-glucose 4,6-dehydratase activity
FGF55_18645	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
FGF55_18650	COG3980	spore coat polysaccharide biosynthesis protein
FGF55_18655	COG1861	Spore coat polysaccharide biosynthesis protein F CMP-KDO synthetase
FGF55_18660	COG2089	acid synthase
FGF55_18665	COG0456	acetyltransferase
FGF55_18670	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
FGF55_18675	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
FGF55_18680	COG0463	Glycosyl transferase, family 2
FGF55_18690	COG2363	Small membrane protein
FGF55_18695	COG2233	PERMEase
FGF55_18710	COG1216	Glycosyl transferase, family 2
FGF55_18725	COG1695	Transcriptional regulator
FGF55_18730	COG0351	phosphomethylpyrimidine kinase
FGF55_18740	COG1621	beta-fructofuranosidase activity
FGF55_18745	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FGF55_18745	COG1263	PTS System
FGF55_18750	COG3711	transcriptional antiterminator
FGF55_18760	COG1404	Belongs to the peptidase S8 family
FGF55_18765	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FGF55_18770	COG0778	Nitroreductase
FGF55_18775	COG0772	Belongs to the SEDS family
FGF55_18780	COG0454	-acetyltransferase
FGF55_18800	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
FGF55_18805	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
FGF55_18810	COG2261	transglycosylase associated protein
FGF55_18815	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
FGF55_18820	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
FGF55_18825	COG2246	polysaccharide biosynthetic process
FGF55_18830	COG1309	transcriptional regulator
FGF55_18850	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
FGF55_18855	COG2837	iron assimilation
FGF55_18860	COG2822	iron ion transport
FGF55_18875	COG0583	DNA-binding transcription factor activity
FGF55_18885	COG1346	cytolysis
FGF55_18890	COG4895	conserved protein (DUF2196)
FGF55_18895	COG0789	Transcriptional regulator
FGF55_18905	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
FGF55_18910	COG0346	lactoylglutathione lyase activity
FGF55_18915	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
FGF55_18920	COG1404	Belongs to the peptidase S8 family
FGF55_18925	COG1442	glycosyl transferase family 8
FGF55_18930	COG1846	Transcriptional regulator
FGF55_18935	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
FGF55_18940	COG2357	RelA SpoT domain protein
FGF55_18945	COG1575	Belongs to the MenA family. Type 1 subfamily
FGF55_18970	COG1696	Membrane protein involved in D-alanine export
FGF55_18980	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
FGF55_18985	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
FGF55_18990	COG1486	melibiose metabolic process
FGF55_18995	COG1447	Phosphotransferase system cellobiose-specific component IIA
FGF55_19000	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
FGF55_19005	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
FGF55_19010	COG3711	transcriptional antiterminator
FGF55_19010	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
FGF55_19025	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FGF55_19030	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FGF55_19040	COG0640	Transcriptional regulator
FGF55_19045	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
FGF55_19050	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
FGF55_19055	COG1447	Phosphotransferase system cellobiose-specific component IIA
FGF55_19060	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
FGF55_19065	COG2723	6-phospho-beta-galactosidase activity
FGF55_19070	COG1940	carbohydrate kinase activity
FGF55_19075	COG1482	cell wall glycoprotein biosynthetic process
FGF55_19085	COG0753	catalase activity
FGF55_19090	COG3049	Linear amide C-N hydrolases, choloylglycine hydrolase family
FGF55_19095	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
FGF55_19100	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
FGF55_19105	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
FGF55_19110	COG4988	ABC transporter
FGF55_19115	COG1294	oxidase, subunit
FGF55_19120	COG1271	oxidase subunit
FGF55_19125	COG3493	citrate carrier protein
FGF55_19130	COG0726	polysaccharide deacetylase
FGF55_19135	COG3842	ATPase activity
FGF55_19140	COG2508	Transcriptional regulator
FGF55_19145	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
FGF55_19155	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
FGF55_19165	COG4894	glucomannan catabolic process
FGF55_19170	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
FGF55_19175	COG0500	methyltransferase
FGF55_19180	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
FGF55_19200	COG0753	catalase activity
FGF55_19200	COG0693	protein deglycase activity
FGF55_19205	COG2851	Citrate transporter
FGF55_19210	COG2273	Hydrolase Family 16
FGF55_19215	COG3711	transcriptional antiterminator
FGF55_19220	COG2270	Major facilitator Superfamily
FGF55_19225	COG0513	Belongs to the DEAD box helicase family
FGF55_19275	COG3209	COG3209 Rhs family protein
FGF55_19285	COG0697	spore germination
FGF55_19290	COG0589	response to stress
FGF55_19300	COG0494	nUDIX hydrolase
FGF55_19305	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
FGF55_19310	COG3507	Belongs to the glycosyl hydrolase 43 family
FGF55_19335	COG0010	Belongs to the arginase family
FGF55_19340	COG0833	amino acid
FGF55_19345	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
FGF55_19350	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
FGF55_19360	COG2390	Transcriptional regulator
FGF55_19365	COG0561	phosphatase activity
FGF55_19395	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
FGF55_19400	COG5294	Protein conserved in bacteria
FGF55_19405	COG0577	efflux transmembrane transporter activity
FGF55_19410	COG1136	(ABC) transporter
FGF55_19415	COG2205	protein histidine kinase activity
FGF55_19420	COG0745	RESPONSE REGULATOR receiver
FGF55_19425	COG2205	protein histidine kinase activity
FGF55_19430	COG0745	RESPONSE REGULATOR receiver
FGF55_19455	COG0745	RESPONSE REGULATOR receiver
FGF55_19485	COG1082	Xylose isomerase domain protein TIM barrel
FGF55_19495	COG2814	Major facilitator Superfamily
FGF55_19525	COG1349	DNA-binding transcription factor activity
FGF55_19530	COG0667	Aldo Keto reductase
FGF55_19535	COG2814	Major facilitator Superfamily
FGF55_19550	COG1028	Short-chain dehydrogenase reductase Sdr
FGF55_19555	COG2197	response regulator
FGF55_19560	COG4585	Histidine kinase
FGF55_19565	COG3239	Fatty acid desaturase
FGF55_19575	COG1309	transcriptional regulator
FGF55_19580	COG1012	belongs to the aldehyde dehydrogenase family
FGF55_19585	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
FGF55_19595	COG0640	Transcriptional regulator
FGF55_19605	COG1714	RDD family
FGF55_19615	COG0450	alkyl hydroperoxide reductase
FGF55_19620	COG3634	alkyl hydroperoxide reductase activity
FGF55_19625	COG3177	Filamentation induced by cAMP protein fic
FGF55_19630	COG1113	amino acid transport
FGF55_19640	COG2080	2 iron, 2 sulfur cluster binding
FGF55_19655	COG2068	MobA-Related Protein
FGF55_19660	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
FGF55_19720	COG3863	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
FGF55_19725	COG0667	Aldo Keto reductase
FGF55_19730	COG0456	acetyltransferase
FGF55_19735	COG0457	Tetratricopeptide repeat
FGF55_19740	COG0010	Belongs to the arginase family
FGF55_19745	COG0833	amino acid
FGF55_19750	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
FGF55_19755	COG3829	transcription factor binding
FGF55_19765	COG0488	(ABC) transporter
FGF55_19780	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
FGF55_19785	COG5002	protein histidine kinase activity
FGF55_19785	COG3850	Histidine kinase
FGF55_19800	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
FGF55_19805	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
FGF55_19810	COG4853	Protein conserved in bacteria
FGF55_19815	COG4863	YycH protein
FGF55_19820	COG5002	protein histidine kinase activity
FGF55_19825	COG0745	RESPONSE REGULATOR receiver
FGF55_19860	COG0346	lactoylglutathione lyase activity
FGF55_19865	COG0305	Participates in initiation and elongation during chromosome replication
FGF55_19880	COG3093	addiction module antidote protein HigA
FGF55_19885	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
FGF55_19890	COG0297	glycogen (starch) synthase activity
FGF55_19900	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
FGF55_19905	COG0438	transferase activity, transferring glycosyl groups
FGF55_19915	COG2112	serine threonine protein kinase
FGF55_19925	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
FGF55_19930	COG4241	membrane
FGF55_19940	COG5577	PFAM Coat F domain
FGF55_19945	COG1733	regulation of RNA biosynthetic process
FGF55_19955	COG0697	spore germination
FGF55_19960	COG1621	beta-fructofuranosidase activity
FGF55_19965	COG1621	beta-fructofuranosidase activity
FGF55_19970	COG1802	Transcriptional regulator
FGF55_19975	COG2318	DinB family
FGF55_19980	COG2211	Major facilitator Superfamily
FGF55_19985	COG0697	spore germination
FGF55_19995	COG0778	Nitroreductase
FGF55_20000	COG1846	Transcriptional regulator
FGF55_20005	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
FGF55_20010	COG1846	Transcriptional regulator
FGF55_20015	COG2153	protein acetylation
FGF55_20025	COG0546	phosphoglycolate phosphatase activity
FGF55_20055	COG1404	Belongs to the peptidase S8 family
FGF55_20065	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FGF55_20070	COG0697	spore germination
FGF55_20075	COG1331	Highly conserved protein containing a thioredoxin domain
FGF55_20080	COG1266	CAAX protease self-immunity
FGF55_20085	COG2814	Major facilitator Superfamily
FGF55_20085	COG0477	Major facilitator Superfamily
FGF55_20090	COG0346	lactoylglutathione lyase activity
FGF55_20095	COG1609	Transcriptional regulator
FGF55_20105	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
FGF55_20110	COG2169	Transcriptional regulator
FGF55_20120	COG0629	single-stranded DNA binding
FGF55_20130	COG0012	GTP binding
FGF55_20135	COG0243	molybdopterin cofactor binding
FGF55_20140	COG4481	Protein conserved in bacteria
FGF55_20145	COG3949	Membrane
FGF55_20160	COG1475	DNA binding
FGF55_20165	COG1192	Involved in chromosome partitioning
FGF55_20190	COG1847	R3H domain protein
FGF55_20195	COG0706	membrane insertase activity
FGF55_20205	COG0230	Belongs to the bacterial ribosomal protein bL34 family