DJ48_1	PWY-6891	thiazole biosynthesis II (Bacillus)
DJ48_1	PWY-6892	thiazole biosynthesis I (E. coli)
DJ48_1	PWY-7560	methylerythritol phosphate pathway II
DJ48_1032	PWY-6409	pyoverdine I biosynthesis
DJ48_1032	PWY-6562	norspermidine biosynthesis
DJ48_1032	PWY-761	rhizobactin 1021 biosynthesis
DJ48_1032	PWY-7855	DJ48_1032
DJ48_1032	PWY-7988	DJ48_1032
DJ48_1084	PWY-4381	fatty acid biosynthesis initiation I
DJ48_1107	PWY-5451	acetone degradation I (to methylglyoxal)
DJ48_1107	PWY-5665	vanillin biosynthesis I
DJ48_1107	PWY-6398	melatonin degradation I
DJ48_1107	PWY-6992	1,5-anhydrofructose degradation
DJ48_1107	PWY-7466	acetone degradation III (to propane-1,2-diol)
DJ48_1107	PWY-7826	DJ48_1107
DJ48_1139	PWY-5839	menaquinol-7 biosynthesis
DJ48_1139	PWY-5851	demethylmenaquinol-9 biosynthesis
DJ48_1139	PWY-5852	demethylmenaquinol-8 biosynthesis I
DJ48_1139	PWY-5853	demethylmenaquinol-6 biosynthesis I
DJ48_1139	PWY-5890	menaquinol-10 biosynthesis
DJ48_1139	PWY-5891	menaquinol-11 biosynthesis
DJ48_1139	PWY-5892	menaquinol-12 biosynthesis
DJ48_1139	PWY-5895	menaquinol-13 biosynthesis
DJ48_1178	PWY-3341	L-proline biosynthesis III
DJ48_1178	PWY-4981	L-proline biosynthesis II (from arginine)
DJ48_1178	PWY-6344	L-ornithine degradation II (Stickland reaction)
DJ48_118	PWY-6906	chitin derivatives degradation
DJ48_118	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
DJ48_118	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
DJ48_1186	PWY-5392	reductive TCA cycle II
DJ48_1186	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
DJ48_1186	PWY-5690	TCA cycle II (plants and fungi)
DJ48_1186	PWY-5913	TCA cycle VI (obligate autotrophs)
DJ48_1186	PWY-6728	methylaspartate cycle
DJ48_1186	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
DJ48_1186	PWY-7254	TCA cycle VII (acetate-producers)
DJ48_1186	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
DJ48_119	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
DJ48_119	PWY-6855	chitin degradation I (archaea)
DJ48_119	PWY-6906	chitin derivatives degradation
DJ48_12	PWY-1281	sulfoacetaldehyde degradation I
DJ48_12	PWY-5482	pyruvate fermentation to acetate II
DJ48_12	PWY-5485	pyruvate fermentation to acetate IV
DJ48_12	PWY-5497	purine nucleobases degradation II (anaerobic)
DJ48_12	PWY-6637	sulfolactate degradation II
DJ48_1221	PWY-4041	&gamma;-glutamyl cycle
DJ48_1221	PWY-7942	DJ48_1221
DJ48_1223	PWY-4041	&gamma;-glutamyl cycle
DJ48_1223	PWY-7942	DJ48_1223
DJ48_1227	PWY-7942	DJ48_1227
DJ48_1283	PWY-6610	adenine and adenosine salvage IV
DJ48_1307	PWY-6303	methyl indole-3-acetate interconversion
DJ48_1307	PWY-6857	retinol biosynthesis
DJ48_1311	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
DJ48_1311	PWY-5491	diethylphosphate degradation
DJ48_1317	PWY-3341	L-proline biosynthesis III
DJ48_1317	PWY-4981	L-proline biosynthesis II (from arginine)
DJ48_1317	PWY-6344	L-ornithine degradation II (Stickland reaction)
DJ48_1318	PWY-3341	L-proline biosynthesis III
DJ48_1318	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
DJ48_1319	PWY-3341	L-proline biosynthesis III
DJ48_1319	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
DJ48_1330	PWY-4261	glycerol degradation I
DJ48_1336	PWY-7254	TCA cycle VII (acetate-producers)
DJ48_134	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
DJ48_134	PWY-5389	3-methylthiopropanoate biosynthesis
DJ48_135	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
DJ48_1351	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
DJ48_1351	PWY-3461	L-tyrosine biosynthesis II
DJ48_1351	PWY-3462	L-phenylalanine biosynthesis II
DJ48_1351	PWY-6120	L-tyrosine biosynthesis III
DJ48_1351	PWY-6164	3-dehydroquinate biosynthesis I
DJ48_1351	PWY-6627	salinosporamide A biosynthesis
DJ48_1351	PWY-7626	bacilysin biosynthesis
DJ48_1351	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
DJ48_1352	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
DJ48_1354	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
DJ48_1355	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
DJ48_136	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
DJ48_137	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
DJ48_137	PWY-5532	adenosine nucleotides degradation IV
DJ48_137	PWY-5723	Rubisco shunt
DJ48_14	PWY-5482	pyruvate fermentation to acetate II
DJ48_14	PWY-5485	pyruvate fermentation to acetate IV
DJ48_14	PWY-5497	purine nucleobases degradation II (anaerobic)
DJ48_140	PWY-6754	<i>S</i>-methyl-5'-thioadenosine degradation I
DJ48_1403	PWY-3961	phosphopantothenate biosynthesis II
DJ48_1404	PWY-5971	palmitate biosynthesis II (bacteria and plants)
DJ48_1404	PWY-5973	<i>cis</i>-vaccenate biosynthesis
DJ48_1404	PWY-5989	stearate biosynthesis II (bacteria and plants)
DJ48_1404	PWY-5994	palmitate biosynthesis I (animals and fungi)
DJ48_1404	PWY-6113	superpathway of mycolate biosynthesis
DJ48_1404	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
DJ48_1404	PWY-6519	8-amino-7-oxononanoate biosynthesis I
DJ48_1404	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
DJ48_1404	PWY-7663	gondoate biosynthesis (anaerobic)
DJ48_1404	PWY-7664	oleate biosynthesis IV (anaerobic)
DJ48_1404	PWY-7858	DJ48_1404
DJ48_1404	PWYG-321	mycolate biosynthesis
DJ48_141	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
DJ48_141	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
DJ48_1431	PWY-7815	DJ48_1431
DJ48_1431	PWY-7816	DJ48_1431
DJ48_1431	PWY-7819	DJ48_1431
DJ48_1433	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
DJ48_1433	PWY-6153	autoinducer AI-2 biosynthesis I
DJ48_1433	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
DJ48_1461	PWY-4261	glycerol degradation I
DJ48_1461	PWY-6118	glycerol-3-phosphate shuttle
DJ48_1461	PWY-6952	glycerophosphodiester degradation
DJ48_1464	PWY-2941	L-lysine biosynthesis II
DJ48_1464	PWY-2942	L-lysine biosynthesis III
DJ48_1464	PWY-5097	L-lysine biosynthesis VI
DJ48_1470	PWY-7805	DJ48_1470
DJ48_1470	PWY-7807	DJ48_1470
DJ48_1491	PWY-7883	DJ48_1491
DJ48_15	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
DJ48_15	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
DJ48_1504	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
DJ48_1504	PWY-5723	Rubisco shunt
DJ48_1522	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
DJ48_1522	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
DJ48_1542	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
DJ48_1542	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
DJ48_1543	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
DJ48_1543	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
DJ48_1543	PWY-7717	DJ48_1543
DJ48_1543	PWY-7733	DJ48_1543
DJ48_1543	PWY-7734	DJ48_1543
DJ48_1543	PWY-7765	DJ48_1543
DJ48_1566	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
DJ48_1566	PWY-622	starch biosynthesis
DJ48_1566	PWY-7900	DJ48_1566
DJ48_1588	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
DJ48_1617	PWY-6788	cellulose degradation II (fungi)
DJ48_1650	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
DJ48_1650	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
DJ48_1656	PWY-5331	taurine biosynthesis
DJ48_1678	PWY-6899	base-degraded thiamin salvage
DJ48_1678	PWY-7356	thiamin salvage IV (yeast)
DJ48_1679	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
DJ48_1679	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
DJ48_1679	PWY-7953	DJ48_1679
DJ48_172	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
DJ48_172	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
DJ48_172	PWY-6936	seleno-amino acid biosynthesis
DJ48_172	PWY-702	L-methionine biosynthesis II
DJ48_1725	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
DJ48_1725	PWY-6153	autoinducer AI-2 biosynthesis I
DJ48_1725	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
DJ48_1736	PWY-5108	L-isoleucine biosynthesis V
DJ48_1736	PWY-5132	humulone biosynthesis
DJ48_1736	PWY-5133	cohumulone biosynthesis
DJ48_1736	PWY-6672	<i>cis</i>-genanyl-CoA degradation
DJ48_1736	PWY-7118	chitin degradation to ethanol
DJ48_1736	PWY-7857	DJ48_1736
DJ48_1737	PWY-4381	fatty acid biosynthesis initiation I
DJ48_1737	PWY-5743	3-hydroxypropanoate cycle
DJ48_1737	PWY-5744	glyoxylate assimilation
DJ48_1737	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
DJ48_1737	PWY-6722	candicidin biosynthesis
DJ48_1771	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
DJ48_1775	PWY-5642	2,4-dinitrotoluene degradation
DJ48_1795	PWY-1622	formaldehyde assimilation I (serine pathway)
DJ48_1795	PWY-5484	glycolysis II (from fructose 6-phosphate)
DJ48_1811	PWY-7511	protein ubiquitylation
DJ48_1816	PWY-7883	DJ48_1816
DJ48_1832	PWY-7883	DJ48_1832
DJ48_1842	PWY-2941	L-lysine biosynthesis II
DJ48_1842	PWY-2942	L-lysine biosynthesis III
DJ48_1842	PWY-5097	L-lysine biosynthesis VI
DJ48_1842	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
DJ48_1842	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
DJ48_1842	PWY-6559	spermidine biosynthesis II
DJ48_1842	PWY-6562	norspermidine biosynthesis
DJ48_1842	PWY-7153	grixazone biosynthesis
DJ48_1842	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
DJ48_1842	PWY-7977	DJ48_1842
DJ48_1859	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
DJ48_19	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
DJ48_19	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
DJ48_19	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
DJ48_19	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
DJ48_1903	PWY-6012	acyl carrier protein metabolism I
DJ48_1903	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
DJ48_1903	PWY-6289	petrobactin biosynthesis
DJ48_1909	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
DJ48_1909	PWY-5901	2,3-dihydroxybenzoate biosynthesis
DJ48_1909	PWY-6406	salicylate biosynthesis I
DJ48_1910	PWY-5901	2,3-dihydroxybenzoate biosynthesis
DJ48_1921	PWY-5642	2,4-dinitrotoluene degradation
DJ48_1925	PWY-5747	2-methylcitrate cycle II
DJ48_1930	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
DJ48_1930	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
DJ48_1930	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
DJ48_1930	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
DJ48_194	PWY-2941	L-lysine biosynthesis II
DJ48_195	PWY-2941	L-lysine biosynthesis II
DJ48_2028	PWY-5667	CDP-diacylglycerol biosynthesis I
DJ48_2028	PWY-5981	CDP-diacylglycerol biosynthesis III
DJ48_2028	PWY-6453	stigma estolide biosynthesis
DJ48_2028	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
DJ48_2028	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
DJ48_2028	PWY-7587	oleate biosynthesis III (cyanobacteria)
DJ48_2028	PWY-7589	palmitoleate biosynthesis III (cyanobacteria)
DJ48_2028	PWY-7782	DJ48_2028
DJ48_2031	PWY-3841	folate transformations II
DJ48_2031	PWY-6614	tetrahydrofolate biosynthesis
DJ48_2032	PWY-3841	folate transformations II
DJ48_2032	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
DJ48_2032	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
DJ48_2032	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
DJ48_2032	PWY-7199	pyrimidine deoxyribonucleosides salvage
DJ48_2032	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
DJ48_2046	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
DJ48_2046	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
DJ48_206	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
DJ48_206	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
DJ48_2116	PWY-6683	sulfate reduction III (assimilatory)
DJ48_2118	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
DJ48_2118	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
DJ48_2118	PWY-5194	siroheme biosynthesis
DJ48_2118	PWY-5196	factor 430 biosynthesis
DJ48_2118	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
DJ48_2119	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
DJ48_2120	PWY-5194	siroheme biosynthesis
DJ48_2120	PWY-5196	factor 430 biosynthesis
DJ48_2120	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
DJ48_2125	PWY-6823	molybdenum cofactor biosynthesis
DJ48_2125	PWY-7887	DJ48_2125
DJ48_2126	PWY-6823	molybdenum cofactor biosynthesis
DJ48_2128	PWY-6823	molybdenum cofactor biosynthesis
DJ48_2135	PWY-6748	nitrate reduction VII (denitrification)
DJ48_2136	PWY-6748	nitrate reduction VII (denitrification)
DJ48_2154	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
DJ48_2154	PWY-2161	folate polyglutamylation
DJ48_2154	PWY-2201	folate transformations I
DJ48_2154	PWY-3841	folate transformations II
DJ48_2181	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
DJ48_2188	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
DJ48_2235	PWY-0	putrescine degradation III
DJ48_2235	PWY-6117	spermine and spermidine degradation I
DJ48_2235	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
DJ48_224	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
DJ48_224	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
DJ48_228	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
DJ48_228	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
DJ48_228	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
DJ48_228	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
DJ48_2286	PWY-702	L-methionine biosynthesis II
DJ48_2289	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
DJ48_2289	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
DJ48_229	PWY-5750	itaconate biosynthesis
DJ48_229	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
DJ48_229	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
DJ48_2321	PWY-4381	fatty acid biosynthesis initiation I
DJ48_2323	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
DJ48_2328	PWY-5481	pyruvate fermentation to lactate
DJ48_2328	PWY-6901	superpathway of glucose and xylose degradation
DJ48_233	PWY-3781	aerobic respiration I (cytochrome c)
DJ48_233	PWY-4521	arsenite oxidation I (respiratory)
DJ48_233	PWY-6692	Fe(II) oxidation
DJ48_233	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
DJ48_2330	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
DJ48_235	PWY-3781	aerobic respiration I (cytochrome c)
DJ48_235	PWY-4521	arsenite oxidation I (respiratory)
DJ48_235	PWY-6692	Fe(II) oxidation
DJ48_235	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
DJ48_2355	PWY-6556	pyrimidine ribonucleosides salvage II
DJ48_2355	PWY-7181	pyrimidine deoxyribonucleosides degradation
DJ48_2355	PWY-7193	pyrimidine ribonucleosides salvage I
DJ48_2355	PWY-7199	pyrimidine deoxyribonucleosides salvage
DJ48_2356	PWY-7181	pyrimidine deoxyribonucleosides degradation
DJ48_2358	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
DJ48_2367	PWY-6654	phosphopantothenate biosynthesis III
DJ48_237	PWY-7142	cyanide detoxification II
DJ48_2396	PWY-5101	L-isoleucine biosynthesis II
DJ48_2396	PWY-5103	L-isoleucine biosynthesis III
DJ48_2396	PWY-5104	L-isoleucine biosynthesis IV
DJ48_2396	PWY-7111	pyruvate fermentation to isobutanol (engineered)
DJ48_2397	PWY-5103	L-isoleucine biosynthesis III
DJ48_2397	PWY-7111	pyruvate fermentation to isobutanol (engineered)
DJ48_2399	PWY-5101	L-isoleucine biosynthesis II
DJ48_2399	PWY-5103	L-isoleucine biosynthesis III
DJ48_2399	PWY-5104	L-isoleucine biosynthesis IV
DJ48_2399	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
DJ48_2399	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
DJ48_2399	PWY-6389	(<i>S</i>)-acetoin biosynthesis
DJ48_2399	PWY-7111	pyruvate fermentation to isobutanol (engineered)
DJ48_2400	PWY-5057	L-valine degradation II
DJ48_2400	PWY-5076	L-leucine degradation III
DJ48_2400	PWY-5078	L-isoleucine degradation II
DJ48_2400	PWY-5101	L-isoleucine biosynthesis II
DJ48_2400	PWY-5103	L-isoleucine biosynthesis III
DJ48_2400	PWY-5104	L-isoleucine biosynthesis IV
DJ48_2400	PWY-5108	L-isoleucine biosynthesis V
DJ48_2400	PWY-7767	DJ48_2400
DJ48_2416	PWY-6936	seleno-amino acid biosynthesis
DJ48_2421	PWY-4381	fatty acid biosynthesis initiation I
DJ48_2434	PWY-2941	L-lysine biosynthesis II
DJ48_2434	PWY-2942	L-lysine biosynthesis III
DJ48_2434	PWY-5097	L-lysine biosynthesis VI
DJ48_2434	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
DJ48_2434	PWY-6559	spermidine biosynthesis II
DJ48_2434	PWY-6562	norspermidine biosynthesis
DJ48_2434	PWY-7153	grixazone biosynthesis
DJ48_2434	PWY-7977	DJ48_2434
DJ48_2444	PWY-5392	reductive TCA cycle II
DJ48_2444	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
DJ48_2444	PWY-5690	TCA cycle II (plants and fungi)
DJ48_2444	PWY-5913	TCA cycle VI (obligate autotrophs)
DJ48_2444	PWY-6728	methylaspartate cycle
DJ48_2444	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
DJ48_2444	PWY-7254	TCA cycle VII (acetate-producers)
DJ48_2444	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
DJ48_2472	PWY-5392	reductive TCA cycle II
DJ48_2472	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
DJ48_2472	PWY-5690	TCA cycle II (plants and fungi)
DJ48_2472	PWY-5913	TCA cycle VI (obligate autotrophs)
DJ48_2472	PWY-6728	methylaspartate cycle
DJ48_2472	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
DJ48_2472	PWY-7254	TCA cycle VII (acetate-producers)
DJ48_2472	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
DJ48_248	PWY-7851	DJ48_248
DJ48_2551	PWY-7980	DJ48_2551
DJ48_2637	PWY-7799	DJ48_2637
DJ48_2637	PWY-7800	DJ48_2637
DJ48_2654	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
DJ48_2654	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
DJ48_2654	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
DJ48_2654	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
DJ48_2662	PWY-5155	&beta;-alanine biosynthesis III
DJ48_2664	PWY-6654	phosphopantothenate biosynthesis III
DJ48_2666	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
DJ48_2666	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
DJ48_2671	PWY-2941	L-lysine biosynthesis II
DJ48_2671	PWY-2942	L-lysine biosynthesis III
DJ48_2671	PWY-5097	L-lysine biosynthesis VI
DJ48_2686	PWY-6164	3-dehydroquinate biosynthesis I
DJ48_2687	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
DJ48_2688	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
DJ48_2688	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
DJ48_2688	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
DJ48_2688	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
DJ48_2688	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
DJ48_2688	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
DJ48_2688	PWY-7205	CMP phosphorylation
DJ48_2688	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
DJ48_2688	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
DJ48_2688	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
DJ48_2688	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
DJ48_2688	PWY-7224	purine deoxyribonucleosides salvage
DJ48_2688	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
DJ48_2688	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
DJ48_2689	PWY-5807	heptaprenyl diphosphate biosynthesis
DJ48_2690	PWY-5839	menaquinol-7 biosynthesis
DJ48_2690	PWY-5844	menaquinol-9 biosynthesis
DJ48_2690	PWY-5849	menaquinol-6 biosynthesis
DJ48_2690	PWY-5890	menaquinol-10 biosynthesis
DJ48_2690	PWY-5891	menaquinol-11 biosynthesis
DJ48_2690	PWY-5892	menaquinol-12 biosynthesis
DJ48_2690	PWY-5895	menaquinol-13 biosynthesis
DJ48_2691	PWY-5807	heptaprenyl diphosphate biosynthesis
DJ48_2692	PWY-5663	tetrahydrobiopterin biosynthesis I
DJ48_2692	PWY-5664	tetrahydrobiopterin biosynthesis II
DJ48_2692	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
DJ48_2692	PWY-6703	preQ<sub>0</sub> biosynthesis
DJ48_2692	PWY-6983	tetrahydrobiopterin biosynthesis III
DJ48_2692	PWY-7442	drosopterin and aurodrosopterin biosynthesis
DJ48_2692	PWY-7852	DJ48_2692
DJ48_2698	PWY-5667	CDP-diacylglycerol biosynthesis I
DJ48_2698	PWY-5981	CDP-diacylglycerol biosynthesis III
DJ48_2698	PWY-7902	DJ48_2698
DJ48_2704	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
DJ48_2704	PWY-6174	mevalonate pathway II (archaea)
DJ48_2704	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
DJ48_2704	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
DJ48_2704	PWY-7102	bisabolene biosynthesis
DJ48_2704	PWY-7391	isoprene biosynthesis II (engineered)
DJ48_2704	PWY-7524	mevalonate pathway III (archaea)
DJ48_2704	PWY-7560	methylerythritol phosphate pathway II
DJ48_2704	PWY-922	mevalonate pathway I
DJ48_2706	PWY-7205	CMP phosphorylation
DJ48_2734	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
DJ48_2734	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
DJ48_2735	PWY-6854	ethylene biosynthesis III (microbes)
DJ48_2741	PWY-4202	arsenate detoxification I (glutaredoxin)
DJ48_2741	PWY-5532	adenosine nucleotides degradation IV
DJ48_2741	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
DJ48_2741	PWY-6608	guanosine nucleotides degradation III
DJ48_2741	PWY-6609	adenine and adenosine salvage III
DJ48_2741	PWY-6611	adenine and adenosine salvage V
DJ48_2741	PWY-6620	guanine and guanosine salvage
DJ48_2741	PWY-6627	salinosporamide A biosynthesis
DJ48_2741	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
DJ48_2741	PWY-7179	purine deoxyribonucleosides degradation I
DJ48_2741	PWY-7179-1	purine deoxyribonucleosides degradation
DJ48_2749	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
DJ48_2749	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
DJ48_2749	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
DJ48_2749	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
DJ48_2775	PWY-5194	siroheme biosynthesis
DJ48_2775	PWY-5196	factor 430 biosynthesis
DJ48_2775	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
DJ48_2776	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
DJ48_2777	PWY-5194	siroheme biosynthesis
DJ48_2777	PWY-5196	factor 430 biosynthesis
DJ48_2777	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
DJ48_2779	PWY-6683	sulfate reduction III (assimilatory)
DJ48_2780	PWY-5340	sulfate activation for sulfonation
DJ48_2781	PWY-5278	sulfite oxidation III
DJ48_2781	PWY-5340	sulfate activation for sulfonation
DJ48_2781	PWY-6683	sulfate reduction III (assimilatory)
DJ48_2781	PWY-6932	selenate reduction
DJ48_2784	PWY-2941	L-lysine biosynthesis II
DJ48_2784	PWY-2942	L-lysine biosynthesis III
DJ48_2784	PWY-5097	L-lysine biosynthesis VI
DJ48_2787	PWY-5669	phosphatidylethanolamine biosynthesis I
DJ48_2802	PWY-7396	butanol and isobutanol biosynthesis (engineered)
DJ48_2803	PWY-6871	3-methylbutanol biosynthesis
DJ48_2804	PWY-5103	L-isoleucine biosynthesis III
DJ48_2804	PWY-7111	pyruvate fermentation to isobutanol (engineered)
DJ48_2805	PWY-5101	L-isoleucine biosynthesis II
DJ48_2805	PWY-5103	L-isoleucine biosynthesis III
DJ48_2805	PWY-5104	L-isoleucine biosynthesis IV
DJ48_2805	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
DJ48_2805	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
DJ48_2805	PWY-6389	(<i>S</i>)-acetoin biosynthesis
DJ48_2805	PWY-7111	pyruvate fermentation to isobutanol (engineered)
DJ48_2806	PWY-5101	L-isoleucine biosynthesis II
DJ48_2806	PWY-5103	L-isoleucine biosynthesis III
DJ48_2806	PWY-5104	L-isoleucine biosynthesis IV
DJ48_2806	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
DJ48_2806	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
DJ48_2806	PWY-6389	(<i>S</i>)-acetoin biosynthesis
DJ48_2806	PWY-7111	pyruvate fermentation to isobutanol (engineered)
DJ48_2807	PWY-5057	L-valine degradation II
DJ48_2807	PWY-5076	L-leucine degradation III
DJ48_2807	PWY-5078	L-isoleucine degradation II
DJ48_2807	PWY-5101	L-isoleucine biosynthesis II
DJ48_2807	PWY-5103	L-isoleucine biosynthesis III
DJ48_2807	PWY-5104	L-isoleucine biosynthesis IV
DJ48_2807	PWY-5108	L-isoleucine biosynthesis V
DJ48_2807	PWY-7767	DJ48_2807
DJ48_2820	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
DJ48_2837	PWY-723	alkylnitronates degradation
DJ48_2850	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
DJ48_2850	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
DJ48_2850	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
DJ48_2850	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
DJ48_2850	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
DJ48_2850	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
DJ48_2850	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
DJ48_2850	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
DJ48_2851	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
DJ48_2851	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
DJ48_2851	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
DJ48_2851	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
DJ48_2851	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
DJ48_2851	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
DJ48_2851	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
DJ48_2851	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
DJ48_2853	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
DJ48_2853	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
DJ48_2853	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
DJ48_2853	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
DJ48_2853	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
DJ48_2853	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
DJ48_2853	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
DJ48_2853	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
DJ48_2861	PWY-6700	queuosine biosynthesis
DJ48_2862	PWY-6703	preQ<sub>0</sub> biosynthesis
DJ48_2864	PWY-6703	preQ<sub>0</sub> biosynthesis
DJ48_2875	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
DJ48_2881	PWY-6832	2-aminoethylphosphonate degradation II
DJ48_2894	PWY-5676	acetyl-CoA fermentation to butanoate II
DJ48_2894	PWY-5741	ethylmalonyl-CoA pathway
DJ48_2894	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
DJ48_2894	PWY-7948	DJ48_2894
DJ48_2933	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
DJ48_2933	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
DJ48_2947	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
DJ48_2948	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
DJ48_2968	PWY-5958	acridone alkaloid biosynthesis
DJ48_2968	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
DJ48_2968	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
DJ48_2982	PWY-5971	palmitate biosynthesis II (bacteria and plants)
DJ48_2982	PWY-5973	<i>cis</i>-vaccenate biosynthesis
DJ48_2982	PWY-5989	stearate biosynthesis II (bacteria and plants)
DJ48_2982	PWY-6113	superpathway of mycolate biosynthesis
DJ48_2982	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
DJ48_2982	PWY-6519	8-amino-7-oxononanoate biosynthesis I
DJ48_2982	PWY-7663	gondoate biosynthesis (anaerobic)
DJ48_2982	PWY-7664	oleate biosynthesis IV (anaerobic)
DJ48_2982	PWY-7858	DJ48_2982
DJ48_2982	PWYG-321	mycolate biosynthesis
DJ48_2984	PWY-3221	dTDP-L-rhamnose biosynthesis II
DJ48_2984	PWY-6808	dTDP-D-forosamine biosynthesis
DJ48_2984	PWY-6942	dTDP-D-desosamine biosynthesis
DJ48_2984	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
DJ48_2984	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
DJ48_2984	PWY-6974	dTDP-L-olivose biosynthesis
DJ48_2984	PWY-6976	dTDP-L-mycarose biosynthesis
DJ48_2984	PWY-7104	dTDP-L-megosamine biosynthesis
DJ48_2984	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
DJ48_2984	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
DJ48_2984	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
DJ48_2984	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
DJ48_2984	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
DJ48_2984	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
DJ48_2984	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
DJ48_2984	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
DJ48_2984	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
DJ48_2984	PWY-7688	DJ48_2984
DJ48_2984	PWY-7814	DJ48_2984
DJ48_2996	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
DJ48_2996	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
DJ48_2996	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
DJ48_2996	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
DJ48_3000	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
DJ48_3000	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
DJ48_3000	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
DJ48_3027	PWY-4381	fatty acid biosynthesis initiation I
DJ48_3028	PWY-4381	fatty acid biosynthesis initiation I
DJ48_3052	PWY-3341	L-proline biosynthesis III
DJ48_3052	PWY-4981	L-proline biosynthesis II (from arginine)
DJ48_3052	PWY-6344	L-ornithine degradation II (Stickland reaction)
DJ48_3052	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
DJ48_3072	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
DJ48_3073	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
DJ48_3073	PWY-7118	chitin degradation to ethanol
DJ48_3073	PWY-7294	xylose degradation IV
DJ48_3073	PWY-7295	L-arabinose degradation IV
DJ48_3073	PWY-7854	DJ48_3073
DJ48_308	PWY-7883	DJ48_308
DJ48_3105	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
DJ48_3105	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
DJ48_3121	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
DJ48_3123	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
DJ48_3123	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
DJ48_3123	PWY-7766	DJ48_3123
DJ48_3124	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
DJ48_3124	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
DJ48_3124	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
DJ48_3124	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
DJ48_3156	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
DJ48_3156	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
DJ48_3156	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
DJ48_3156	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
DJ48_3161	PWY-4261	glycerol degradation I
DJ48_3161	PWY-6118	glycerol-3-phosphate shuttle
DJ48_3161	PWY-6952	glycerophosphodiester degradation
DJ48_3162	PWY-4261	glycerol degradation I
DJ48_321	PWY-6654	phosphopantothenate biosynthesis III
DJ48_3222	PWY-5669	phosphatidylethanolamine biosynthesis I
DJ48_328	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
DJ48_328	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
DJ48_328	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
DJ48_329	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
DJ48_329	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
DJ48_330	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
DJ48_330	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
DJ48_330	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
DJ48_330	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
DJ48_3306	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
DJ48_3307	PWY-5101	L-isoleucine biosynthesis II
DJ48_3307	PWY-5103	L-isoleucine biosynthesis III
DJ48_3307	PWY-5104	L-isoleucine biosynthesis IV
DJ48_3307	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
DJ48_3307	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
DJ48_3307	PWY-6389	(<i>S</i>)-acetoin biosynthesis
DJ48_3307	PWY-7111	pyruvate fermentation to isobutanol (engineered)
DJ48_331	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
DJ48_331	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
DJ48_331	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
DJ48_331	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
DJ48_332	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
DJ48_332	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
DJ48_332	PWY-7953	DJ48_332
DJ48_3324	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
DJ48_3324	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
DJ48_3333	PWY-7352	daunorubicin biosynthesis
DJ48_3333	PWY-7354	aclacinomycin biosynthesis
DJ48_3359	PWY-7511	protein ubiquitylation
DJ48_3399	PWY-6483	ceramide degradation
DJ48_3399	PWY-7119	sphingolipid recycling and degradation (yeast)
DJ48_341	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
DJ48_3430	PWY-6910	hydroxymethylpyrimidine salvage
DJ48_3430	PWY-7356	thiamin salvage IV (yeast)
DJ48_3430	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
DJ48_3432	PWY-6891	thiazole biosynthesis II (Bacillus)
DJ48_3432	PWY-6892	thiazole biosynthesis I (E. coli)
DJ48_3434	PWY-7396	butanol and isobutanol biosynthesis (engineered)
DJ48_3434	PWY-7806	DJ48_3434
DJ48_3435	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
DJ48_3435	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
DJ48_3435	PWY-6897	thiamin salvage II
DJ48_3435	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
DJ48_3435	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
DJ48_3435	PWY-7356	thiamin salvage IV (yeast)
DJ48_3435	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
DJ48_3439	PWY-6899	base-degraded thiamin salvage
DJ48_3439	PWY-7356	thiamin salvage IV (yeast)
DJ48_348	PWY-7884	DJ48_348
DJ48_3485	PWY-3781	aerobic respiration I (cytochrome c)
DJ48_3485	PWY-4521	arsenite oxidation I (respiratory)
DJ48_3485	PWY-6692	Fe(II) oxidation
DJ48_3485	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
DJ48_3505	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
DJ48_3509	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
DJ48_351	PWY-7183	pyrimidine nucleobases salvage I
DJ48_3511	PWY-7782	DJ48_3511
DJ48_3511	PWY-7783	DJ48_3511
DJ48_3517	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
DJ48_3517	PWY-5723	Rubisco shunt
DJ48_353	PWY-5686	UMP biosynthesis
DJ48_353	PWY-7790	DJ48_353
DJ48_353	PWY-7791	DJ48_353
DJ48_354	PWY-5686	UMP biosynthesis
DJ48_354	PWY-7790	DJ48_354
DJ48_354	PWY-7791	DJ48_354
DJ48_355	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
DJ48_355	PWY-5686	UMP biosynthesis
DJ48_355	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
DJ48_355	PWY-7790	DJ48_355
DJ48_355	PWY-7791	DJ48_355
DJ48_356	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
DJ48_356	PWY-5686	UMP biosynthesis
DJ48_356	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
DJ48_356	PWY-7790	DJ48_356
DJ48_356	PWY-7791	DJ48_356
DJ48_3578	PWY-5392	reductive TCA cycle II
DJ48_3578	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
DJ48_3578	PWY-5690	TCA cycle II (plants and fungi)
DJ48_3578	PWY-5913	TCA cycle VI (obligate autotrophs)
DJ48_3578	PWY-6728	methylaspartate cycle
DJ48_3578	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
DJ48_3578	PWY-7254	TCA cycle VII (acetate-producers)
DJ48_3578	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
DJ48_359	PWY-5686	UMP biosynthesis
DJ48_359	PWY-7790	DJ48_359
DJ48_359	PWY-7791	DJ48_359
DJ48_3590	PWY-5381	pyridine nucleotide cycling (plants)
DJ48_3598	PWY-1881	formate oxidation to CO<sub>2</sub>
DJ48_3598	PWY-5497	purine nucleobases degradation II (anaerobic)
DJ48_3598	PWY-6696	oxalate degradation III
DJ48_3598	PWY-7985	DJ48_3598
DJ48_360	PWY-5686	UMP biosynthesis
DJ48_360	PWY-7790	DJ48_360
DJ48_360	PWY-7791	DJ48_360
DJ48_3643	PWY-6700	queuosine biosynthesis
DJ48_3646	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
DJ48_3646	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
DJ48_3646	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
DJ48_3646	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
DJ48_366	PWY-7799	DJ48_366
DJ48_366	PWY-7800	DJ48_366
DJ48_3677	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
DJ48_3696	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
DJ48_3696	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
DJ48_3696	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
DJ48_3696	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
DJ48_3696	PWY-7817	DJ48_3696
DJ48_3698	PWY-5480	pyruvate fermentation to ethanol I
DJ48_3698	PWY-5485	pyruvate fermentation to acetate IV
DJ48_3698	PWY-5493	reductive monocarboxylic acid cycle
DJ48_37	PWY-3341	L-proline biosynthesis III
DJ48_37	PWY-4981	L-proline biosynthesis II (from arginine)
DJ48_37	PWY-6344	L-ornithine degradation II (Stickland reaction)
DJ48_371	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
DJ48_3712	PWY-7511	protein ubiquitylation
DJ48_3720	PWY-7883	DJ48_3720
DJ48_373	PWY-7851	DJ48_373
DJ48_3781	PWY-5392	reductive TCA cycle II
DJ48_3781	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
DJ48_3781	PWY-5690	TCA cycle II (plants and fungi)
DJ48_3781	PWY-5913	TCA cycle VI (obligate autotrophs)
DJ48_3781	PWY-6728	methylaspartate cycle
DJ48_3781	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
DJ48_3781	PWY-7254	TCA cycle VII (acetate-producers)
DJ48_3781	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
DJ48_382	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
DJ48_382	PWY-5723	Rubisco shunt
DJ48_3820	PWY-6855	chitin degradation I (archaea)
DJ48_3820	PWY-6902	chitin degradation II
DJ48_3820	PWY-7822	DJ48_3820
DJ48_3829	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
DJ48_3829	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
DJ48_3829	PWY-6897	thiamin salvage II
DJ48_3829	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
DJ48_3829	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
DJ48_3829	PWY-7356	thiamin salvage IV (yeast)
DJ48_3829	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
DJ48_383	PWY-6898	thiamin salvage III
DJ48_383	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
DJ48_383	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
DJ48_383	PWY-7356	thiamin salvage IV (yeast)
DJ48_3830	PWY-6897	thiamin salvage II
DJ48_3830	PWY-7356	thiamin salvage IV (yeast)
DJ48_3830	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
DJ48_3846	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
DJ48_3846	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
DJ48_3846	PWY-7717	DJ48_3846
DJ48_3846	PWY-7733	DJ48_3846
DJ48_3846	PWY-7734	DJ48_3846
DJ48_3846	PWY-7765	DJ48_3846
DJ48_3856	PWY-101	photosynthesis light reactions
DJ48_3861	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
DJ48_3861	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
DJ48_3862	PWY-6754	<i>S</i>-methyl-5'-thioadenosine degradation I
DJ48_3887	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
DJ48_3899	PWY-6853	ethylene biosynthesis II (microbes)
DJ48_390	PWY-4381	fatty acid biosynthesis initiation I
DJ48_390	PWY-6799	fatty acid biosynthesis (plant mitochondria)
DJ48_390	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
DJ48_3908	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
DJ48_3908	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
DJ48_3908	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
DJ48_3909	PWY-6123	inosine-5'-phosphate biosynthesis I
DJ48_3909	PWY-6124	inosine-5'-phosphate biosynthesis II
DJ48_3909	PWY-7234	inosine-5'-phosphate biosynthesis III
DJ48_391	PWY-5367	petroselinate biosynthesis
DJ48_391	PWY-5971	palmitate biosynthesis II (bacteria and plants)
DJ48_391	PWY-5973	<i>cis</i>-vaccenate biosynthesis
DJ48_391	PWY-5989	stearate biosynthesis II (bacteria and plants)
DJ48_391	PWY-5994	palmitate biosynthesis I (animals and fungi)
DJ48_391	PWY-6113	superpathway of mycolate biosynthesis
DJ48_391	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
DJ48_391	PWY-6519	8-amino-7-oxononanoate biosynthesis I
DJ48_391	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
DJ48_391	PWY-7663	gondoate biosynthesis (anaerobic)
DJ48_391	PWY-7664	oleate biosynthesis IV (anaerobic)
DJ48_391	PWY-7858	DJ48_391
DJ48_391	PWYG-321	mycolate biosynthesis
DJ48_3910	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
DJ48_3910	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
DJ48_3911	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
DJ48_3911	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
DJ48_3911	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
DJ48_3912	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
DJ48_3912	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
DJ48_3912	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
DJ48_3912	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
DJ48_3913	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
DJ48_3913	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
DJ48_3913	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
DJ48_3914	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
DJ48_3914	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
DJ48_3914	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
DJ48_3915	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
DJ48_3915	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
DJ48_3915	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
DJ48_3916	PWY-6123	inosine-5'-phosphate biosynthesis I
DJ48_3916	PWY-6124	inosine-5'-phosphate biosynthesis II
DJ48_3916	PWY-7234	inosine-5'-phosphate biosynthesis III
DJ48_3917	PWY-6123	inosine-5'-phosphate biosynthesis I
DJ48_3917	PWY-6124	inosine-5'-phosphate biosynthesis II
DJ48_3917	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
DJ48_3917	PWY-7234	inosine-5'-phosphate biosynthesis III
DJ48_3919	PWY-6123	inosine-5'-phosphate biosynthesis I
DJ48_3919	PWY-7234	inosine-5'-phosphate biosynthesis III
DJ48_3928	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
DJ48_3948	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
DJ48_3980	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
DJ48_3982	PWY-6012	acyl carrier protein metabolism I
DJ48_3982	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
DJ48_3982	PWY-6289	petrobactin biosynthesis
DJ48_3986	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
DJ48_3986	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
DJ48_3986	PWY-7953	DJ48_3986
DJ48_3987	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
DJ48_3987	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
DJ48_3987	PWY-7953	DJ48_3987
DJ48_401	PWY-6829	tRNA methylation (yeast)
DJ48_401	PWY-7285	methylwyosine biosynthesis
DJ48_401	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
DJ48_4029	PWY-3341	L-proline biosynthesis III
DJ48_4029	PWY-4981	L-proline biosynthesis II (from arginine)
DJ48_4029	PWY-6344	L-ornithine degradation II (Stickland reaction)
DJ48_406	PWY-5392	reductive TCA cycle II
DJ48_406	PWY-5537	pyruvate fermentation to acetate V
DJ48_406	PWY-5538	pyruvate fermentation to acetate VI
DJ48_406	PWY-5690	TCA cycle II (plants and fungi)
DJ48_406	PWY-5913	TCA cycle VI (obligate autotrophs)
DJ48_406	PWY-6728	methylaspartate cycle
DJ48_406	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
DJ48_406	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
DJ48_4062	PWY-4261	glycerol degradation I
DJ48_4062	PWY-5530	sorbitol biosynthesis II
DJ48_4065	PWY-6749	CMP-legionaminate biosynthesis I
DJ48_4066	PWY-6749	CMP-legionaminate biosynthesis I
DJ48_4069	PWY-31	canavanine degradation
DJ48_4069	PWY-4984	urea cycle
DJ48_4069	PWY-6305	putrescine biosynthesis IV
DJ48_4069	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
DJ48_407	PWY-5392	reductive TCA cycle II
DJ48_407	PWY-5537	pyruvate fermentation to acetate V
DJ48_407	PWY-5538	pyruvate fermentation to acetate VI
DJ48_407	PWY-5690	TCA cycle II (plants and fungi)
DJ48_407	PWY-5913	TCA cycle VI (obligate autotrophs)
DJ48_407	PWY-6728	methylaspartate cycle
DJ48_407	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
DJ48_407	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
DJ48_4090	PWY-7883	DJ48_4090
DJ48_41	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
DJ48_41	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
DJ48_4104	PWY-7799	DJ48_4104
DJ48_4104	PWY-7800	DJ48_4104
DJ48_4105	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
DJ48_4147	PWY-6936	seleno-amino acid biosynthesis
DJ48_4147	PWY-7274	D-cycloserine biosynthesis
DJ48_4147	PWY-7870	DJ48_4147
DJ48_4148	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
DJ48_4149	PWY-7560	methylerythritol phosphate pathway II
DJ48_4150	PWY-7560	methylerythritol phosphate pathway II
DJ48_4165	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
DJ48_4165	PWY-6148	tetrahydromethanopterin biosynthesis
DJ48_4165	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
DJ48_4165	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
DJ48_4165	PWY-7852	DJ48_4165
DJ48_4165	PWY-7853	DJ48_4165
DJ48_4166	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
DJ48_4166	PWY-6148	tetrahydromethanopterin biosynthesis
DJ48_4166	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
DJ48_4166	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
DJ48_4167	PWY-6614	tetrahydrofolate biosynthesis
DJ48_4169	PWY-5958	acridone alkaloid biosynthesis
DJ48_4169	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
DJ48_4169	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
DJ48_4170	PWY-5958	acridone alkaloid biosynthesis
DJ48_4170	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
DJ48_4170	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
DJ48_4171	PWY-6936	seleno-amino acid biosynthesis
DJ48_4173	PWY-3961	phosphopantothenate biosynthesis II
DJ48_4175	PWY-6599	guanine and guanosine salvage II
DJ48_4175	PWY-6609	adenine and adenosine salvage III
DJ48_4175	PWY-6610	adenine and adenosine salvage IV
DJ48_4175	PWY-6620	guanine and guanosine salvage
DJ48_4190	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
DJ48_4192	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
DJ48_4196	PWY-7560	methylerythritol phosphate pathway II
DJ48_42	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
DJ48_420	PWY-5667	CDP-diacylglycerol biosynthesis I
DJ48_420	PWY-5981	CDP-diacylglycerol biosynthesis III
DJ48_420	PWY-7817	DJ48_420
DJ48_421	PWY-7560	methylerythritol phosphate pathway II
DJ48_4211	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
DJ48_4211	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
DJ48_4211	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
DJ48_4211	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
DJ48_4211	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
DJ48_4211	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
DJ48_4230	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
DJ48_4231	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
DJ48_4232	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
DJ48_4233	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
DJ48_4233	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
DJ48_4234	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
DJ48_4234	PWY-6596	adenosine nucleotides degradation I
DJ48_4234	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
DJ48_4266	PWY-7805	DJ48_4266
DJ48_4266	PWY-7807	DJ48_4266
DJ48_4269	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
DJ48_4289	PWY-3821	galactose degradation III
DJ48_4289	PWY-6317	galactose degradation I (Leloir pathway)
DJ48_4289	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
DJ48_4289	PWY-6527	stachyose degradation
DJ48_4289	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
DJ48_4289	PWY-7344	UDP-D-galactose biosynthesis
DJ48_4293	PWY-6854	ethylene biosynthesis III (microbes)
DJ48_43	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
DJ48_43	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
DJ48_4319	PWY-7815	DJ48_4319
DJ48_4319	PWY-7816	DJ48_4319
DJ48_4319	PWY-7819	DJ48_4319
DJ48_4325	PWY-6910	hydroxymethylpyrimidine salvage
DJ48_4325	PWY-7356	thiamin salvage IV (yeast)
DJ48_4325	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
DJ48_433	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
DJ48_433	PWY-6167	flavin biosynthesis II (archaea)
DJ48_433	PWY-6168	flavin biosynthesis III (fungi)
DJ48_433	PWY-7863	DJ48_433
DJ48_4350	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
DJ48_4350	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
DJ48_4352	PWY-1281	sulfoacetaldehyde degradation I
DJ48_4352	PWY-5482	pyruvate fermentation to acetate II
DJ48_4352	PWY-5485	pyruvate fermentation to acetate IV
DJ48_4352	PWY-5497	purine nucleobases degradation II (anaerobic)
DJ48_4352	PWY-6637	sulfolactate degradation II
DJ48_4353	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
DJ48_4353	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
DJ48_4365	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
DJ48_4365	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
DJ48_4365	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
DJ48_4365	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
DJ48_4370	PWY-40	putrescine biosynthesis I
DJ48_4370	PWY-6305	putrescine biosynthesis IV
DJ48_4383	PWY-7799	DJ48_4383
DJ48_4383	PWY-7800	DJ48_4383
DJ48_4396	PWY-1361	benzoyl-CoA degradation I (aerobic)
DJ48_4396	PWY-5109	2-methylbutanoate biosynthesis
DJ48_4396	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
DJ48_4396	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
DJ48_4396	PWY-5177	glutaryl-CoA degradation
DJ48_4396	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
DJ48_4396	PWY-6435	4-hydroxybenzoate biosynthesis V
DJ48_4396	PWY-6583	pyruvate fermentation to butanol I
DJ48_4396	PWY-6863	pyruvate fermentation to hexanol
DJ48_4396	PWY-6883	pyruvate fermentation to butanol II
DJ48_4396	PWY-6944	androstenedione degradation
DJ48_4396	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
DJ48_4396	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
DJ48_4396	PWY-7007	methyl ketone biosynthesis
DJ48_4396	PWY-7046	4-coumarate degradation (anaerobic)
DJ48_4396	PWY-7094	fatty acid salvage
DJ48_4396	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
DJ48_4396	PWY-735	jasmonic acid biosynthesis
DJ48_4396	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
DJ48_4396	PWY-7606	docosahexaenoate biosynthesis III (mammals)
DJ48_4396	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
DJ48_4396	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
DJ48_4396	PWY-7726	DJ48_4396
DJ48_4396	PWY-7778	DJ48_4396
DJ48_4396	PWY-7779	DJ48_4396
DJ48_4401	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
DJ48_4401	PWY-7177	UTP and CTP dephosphorylation II
DJ48_4401	PWY-7185	UTP and CTP dephosphorylation I
DJ48_4405	PWY-1042	glycolysis IV (plant cytosol)
DJ48_4405	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
DJ48_4405	PWY-5484	glycolysis II (from fructose 6-phosphate)
DJ48_4405	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
DJ48_4405	PWY-7385	1,3-propanediol biosynthesis (engineered)
DJ48_4406	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
DJ48_4406	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
DJ48_4406	PWY-7953	DJ48_4406
DJ48_4407	PWY-5484	glycolysis II (from fructose 6-phosphate)
DJ48_4408	PWY-7980	DJ48_4408
DJ48_441	PWY-2941	L-lysine biosynthesis II
DJ48_441	PWY-2942	L-lysine biosynthesis III
DJ48_441	PWY-5097	L-lysine biosynthesis VI
DJ48_441	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
DJ48_441	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
DJ48_441	PWY-6559	spermidine biosynthesis II
DJ48_441	PWY-6562	norspermidine biosynthesis
DJ48_441	PWY-7153	grixazone biosynthesis
DJ48_441	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
DJ48_441	PWY-7977	DJ48_441
DJ48_4410	PWY-7199	pyrimidine deoxyribonucleosides salvage
DJ48_442	PWY-2941	L-lysine biosynthesis II
DJ48_442	PWY-2942	L-lysine biosynthesis III
DJ48_442	PWY-5097	L-lysine biosynthesis VI
DJ48_442	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
DJ48_442	PWY-6559	spermidine biosynthesis II
DJ48_442	PWY-6562	norspermidine biosynthesis
DJ48_442	PWY-7153	grixazone biosynthesis
DJ48_442	PWY-7977	DJ48_442
DJ48_4424	PWY-1622	formaldehyde assimilation I (serine pathway)
DJ48_4424	PWY-181	photorespiration
DJ48_4424	PWY-2161	folate polyglutamylation
DJ48_4424	PWY-2201	folate transformations I
DJ48_4424	PWY-3661	glycine betaine degradation I
DJ48_4424	PWY-3661-1	glycine betaine degradation II (mammalian)
DJ48_4424	PWY-3841	folate transformations II
DJ48_4424	PWY-5497	purine nucleobases degradation II (anaerobic)
DJ48_4425	PWY-7183	pyrimidine nucleobases salvage I
DJ48_443	PWY-2941	L-lysine biosynthesis II
DJ48_443	PWY-2942	L-lysine biosynthesis III
DJ48_443	PWY-5097	L-lysine biosynthesis VI
DJ48_4432	PWY-7980	DJ48_4432
DJ48_4434	PWY-7980	DJ48_4434
DJ48_4452	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
DJ48_4452	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
DJ48_4452	PWY-7953	DJ48_4452
DJ48_4466	PWY-7651	heparan sulfate degradation
DJ48_4471	PWY-5971	palmitate biosynthesis II (bacteria and plants)
DJ48_4471	PWY-5973	<i>cis</i>-vaccenate biosynthesis
DJ48_4471	PWY-5989	stearate biosynthesis II (bacteria and plants)
DJ48_4471	PWY-5994	palmitate biosynthesis I (animals and fungi)
DJ48_4471	PWY-6113	superpathway of mycolate biosynthesis
DJ48_4471	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
DJ48_4471	PWY-6519	8-amino-7-oxononanoate biosynthesis I
DJ48_4471	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
DJ48_4471	PWY-7663	gondoate biosynthesis (anaerobic)
DJ48_4471	PWY-7664	oleate biosynthesis IV (anaerobic)
DJ48_4471	PWY-7858	DJ48_4471
DJ48_4471	PWYG-321	mycolate biosynthesis
DJ48_4474	PWY-3821	galactose degradation III
DJ48_4474	PWY-6317	galactose degradation I (Leloir pathway)
DJ48_4474	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
DJ48_4474	PWY-6527	stachyose degradation
DJ48_4474	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
DJ48_4474	PWY-7344	UDP-D-galactose biosynthesis
DJ48_45	PWY-4981	L-proline biosynthesis II (from arginine)
DJ48_45	PWY-4984	urea cycle
DJ48_45	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
DJ48_4509	PWY-7511	protein ubiquitylation
DJ48_4513	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
DJ48_4529	PWY-6834	spermidine biosynthesis III
DJ48_4540	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
DJ48_4540	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
DJ48_4540	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
DJ48_4541	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
DJ48_4541	PWY-7820	DJ48_4541
DJ48_4582	PWY-7805	DJ48_4582
DJ48_4582	PWY-7807	DJ48_4582
DJ48_460	PWY-5269	cardiolipin biosynthesis II
DJ48_460	PWY-5668	cardiolipin biosynthesis I
DJ48_460	PWY-7817	DJ48_460
DJ48_4604	PWY-1042	glycolysis IV (plant cytosol)
DJ48_4604	PWY-5484	glycolysis II (from fructose 6-phosphate)
DJ48_4604	PWY-6901	superpathway of glucose and xylose degradation
DJ48_4604	PWY-7003	glycerol degradation to butanol
DJ48_4605	PWY-1042	glycolysis IV (plant cytosol)
DJ48_4605	PWY-5484	glycolysis II (from fructose 6-phosphate)
DJ48_4605	PWY-6886	1-butanol autotrophic biosynthesis
DJ48_4605	PWY-6901	superpathway of glucose and xylose degradation
DJ48_4605	PWY-7003	glycerol degradation to butanol
DJ48_4606	PWY-1042	glycolysis IV (plant cytosol)
DJ48_4606	PWY-5484	glycolysis II (from fructose 6-phosphate)
DJ48_4606	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
DJ48_4606	PWY-7003	glycerol degradation to butanol
DJ48_4607	PWY-1042	glycolysis IV (plant cytosol)
DJ48_4607	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
DJ48_4607	PWY-5484	glycolysis II (from fructose 6-phosphate)
DJ48_4607	PWY-5723	Rubisco shunt
DJ48_4607	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
DJ48_4607	PWY-6886	1-butanol autotrophic biosynthesis
DJ48_4607	PWY-6901	superpathway of glucose and xylose degradation
DJ48_4607	PWY-7003	glycerol degradation to butanol
DJ48_4607	PWY-7124	ethylene biosynthesis V (engineered)
DJ48_4607	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
DJ48_4608	PWY-1042	glycolysis IV (plant cytosol)
DJ48_4608	PWY-1622	formaldehyde assimilation I (serine pathway)
DJ48_4608	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
DJ48_4608	PWY-5484	glycolysis II (from fructose 6-phosphate)
DJ48_4608	PWY-5723	Rubisco shunt
DJ48_4608	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
DJ48_4608	PWY-6886	1-butanol autotrophic biosynthesis
DJ48_4608	PWY-6901	superpathway of glucose and xylose degradation
DJ48_4608	PWY-7003	glycerol degradation to butanol
DJ48_4608	PWY-7124	ethylene biosynthesis V (engineered)
DJ48_4608	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
DJ48_4653	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
DJ48_4653	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
DJ48_4653	PWY-7953	DJ48_4653
DJ48_467	PWY-7533	gliotoxin biosynthesis
DJ48_468	PWY-5392	reductive TCA cycle II
DJ48_468	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
DJ48_4711	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
DJ48_4711	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
DJ48_4714	PWY-1361	benzoyl-CoA degradation I (aerobic)
DJ48_4714	PWY-5109	2-methylbutanoate biosynthesis
DJ48_4714	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
DJ48_4714	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
DJ48_4714	PWY-5177	glutaryl-CoA degradation
DJ48_4714	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
DJ48_4714	PWY-6435	4-hydroxybenzoate biosynthesis V
DJ48_4714	PWY-6583	pyruvate fermentation to butanol I
DJ48_4714	PWY-6863	pyruvate fermentation to hexanol
DJ48_4714	PWY-6883	pyruvate fermentation to butanol II
DJ48_4714	PWY-6944	androstenedione degradation
DJ48_4714	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
DJ48_4714	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
DJ48_4714	PWY-7007	methyl ketone biosynthesis
DJ48_4714	PWY-7046	4-coumarate degradation (anaerobic)
DJ48_4714	PWY-7094	fatty acid salvage
DJ48_4714	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
DJ48_4714	PWY-735	jasmonic acid biosynthesis
DJ48_4714	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
DJ48_4714	PWY-7606	docosahexaenoate biosynthesis III (mammals)
DJ48_4714	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
DJ48_4714	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
DJ48_4714	PWY-7726	DJ48_4714
DJ48_4714	PWY-7778	DJ48_4714
DJ48_4714	PWY-7779	DJ48_4714
DJ48_4723	PWY-5481	pyruvate fermentation to lactate
DJ48_4723	PWY-6901	superpathway of glucose and xylose degradation
DJ48_4743	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
DJ48_4752	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
DJ48_4752	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
DJ48_4762	PWY-5484	glycolysis II (from fructose 6-phosphate)
DJ48_4785	PWY-2941	L-lysine biosynthesis II
DJ48_4785	PWY-5097	L-lysine biosynthesis VI
DJ48_4795	PWY-101	photosynthesis light reactions
DJ48_4802	PWY-6749	CMP-legionaminate biosynthesis I
DJ48_4803	PWY-3801	sucrose degradation II (sucrose synthase)
DJ48_4803	PWY-6527	stachyose degradation
DJ48_4803	PWY-7238	sucrose biosynthesis II
DJ48_4803	PWY-7343	UDP-glucose biosynthesis
DJ48_4803	PWY-7817	DJ48_4803
DJ48_4815	PWY-6854	ethylene biosynthesis III (microbes)
DJ48_4824	PWY-3801	sucrose degradation II (sucrose synthase)
DJ48_4824	PWY-5054	sorbitol biosynthesis I
DJ48_4824	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
DJ48_4824	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
DJ48_4824	PWY-5659	GDP-mannose biosynthesis
DJ48_4824	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
DJ48_4824	PWY-621	sucrose degradation III (sucrose invertase)
DJ48_4824	PWY-622	starch biosynthesis
DJ48_4824	PWY-6981	chitin biosynthesis
DJ48_4824	PWY-6992	1,5-anhydrofructose degradation
DJ48_4824	PWY-7238	sucrose biosynthesis II
DJ48_4824	PWY-7347	sucrose biosynthesis III
DJ48_4824	PWY-7385	1,3-propanediol biosynthesis (engineered)
DJ48_4854	PWY-5481	pyruvate fermentation to lactate
DJ48_4854	PWY-6901	superpathway of glucose and xylose degradation
DJ48_4855	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
DJ48_4855	PWY-622	starch biosynthesis
DJ48_4855	PWY-7900	DJ48_4855
DJ48_4856	PWY-622	starch biosynthesis
DJ48_4856	PWY-7902	DJ48_4856
DJ48_4858	PWY-622	starch biosynthesis
DJ48_4859	PWY-5941	glycogen degradation II (eukaryotic)
DJ48_4859	PWY-6731	starch degradation III
DJ48_4859	PWY-6737	starch degradation V
DJ48_4859	PWY-7238	sucrose biosynthesis II
DJ48_4865	PWY-5839	menaquinol-7 biosynthesis
DJ48_4865	PWY-5851	demethylmenaquinol-9 biosynthesis
DJ48_4865	PWY-5852	demethylmenaquinol-8 biosynthesis I
DJ48_4865	PWY-5853	demethylmenaquinol-6 biosynthesis I
DJ48_4865	PWY-5890	menaquinol-10 biosynthesis
DJ48_4865	PWY-5891	menaquinol-11 biosynthesis
DJ48_4865	PWY-5892	menaquinol-12 biosynthesis
DJ48_4865	PWY-5895	menaquinol-13 biosynthesis
DJ48_4866	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
DJ48_4866	PWY-5901	2,3-dihydroxybenzoate biosynthesis
DJ48_4866	PWY-6406	salicylate biosynthesis I
DJ48_4867	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
DJ48_4868	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
DJ48_4869	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
DJ48_4870	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
DJ48_4871	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
DJ48_4879	PWY-7310	D-glucosaminate degradation
DJ48_4880	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
DJ48_4880	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
DJ48_4880	PWY-7242	D-fructuronate degradation
DJ48_4880	PWY-7310	D-glucosaminate degradation
DJ48_4880	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
DJ48_4903	PWY-6599	guanine and guanosine salvage II
DJ48_4903	PWY-6609	adenine and adenosine salvage III
DJ48_4903	PWY-6610	adenine and adenosine salvage IV
DJ48_4903	PWY-6620	guanine and guanosine salvage
DJ48_4928	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
DJ48_4928	PWY-5743	3-hydroxypropanoate cycle
DJ48_4928	PWY-5744	glyoxylate assimilation
DJ48_4928	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
DJ48_4928	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
DJ48_4928	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
DJ48_4928	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
DJ48_4929	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
DJ48_4929	PWY-6153	autoinducer AI-2 biosynthesis I
DJ48_4929	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
DJ48_4933	PWY-6502	oxidized GTP and dGTP detoxification
DJ48_4954	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
DJ48_4954	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
DJ48_4955	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
DJ48_4955	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
DJ48_4959	PWY-5964	guanylyl molybdenum cofactor biosynthesis
DJ48_4959	PWY-7639	bis(guanylyl molybdenum cofactor) biosynthesis
DJ48_4967	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
DJ48_4967	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
DJ48_4994	PWY-6823	molybdenum cofactor biosynthesis
DJ48_4996	PWY-6823	molybdenum cofactor biosynthesis
DJ48_4997	PWY-6823	molybdenum cofactor biosynthesis
DJ48_4999	PWY-6823	molybdenum cofactor biosynthesis
DJ48_4999	PWY-7887	DJ48_4999
DJ48_5032	PWY-5381	pyridine nucleotide cycling (plants)
DJ48_5033	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
DJ48_5033	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
DJ48_5033	PWY-7953	DJ48_5033
DJ48_5065	PWY-7793	DJ48_5065
DJ48_5071	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
DJ48_5077	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
DJ48_5077	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
DJ48_5077	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
DJ48_5082	PWY-5482	pyruvate fermentation to acetate II
DJ48_5082	PWY-5485	pyruvate fermentation to acetate IV
DJ48_5082	PWY-5497	purine nucleobases degradation II (anaerobic)
DJ48_5090	PWY-4983	L-citrulline-nitric oxide cycle
DJ48_5090	PWY-4984	urea cycle
DJ48_5090	PWY-5	canavanine biosynthesis
DJ48_5090	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
DJ48_5090	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
DJ48_5091	PWY-4983	L-citrulline-nitric oxide cycle
DJ48_5091	PWY-4984	urea cycle
DJ48_5091	PWY-5	canavanine biosynthesis
DJ48_5091	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
DJ48_5091	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
DJ48_5109	PWY-7799	DJ48_5109
DJ48_5109	PWY-7800	DJ48_5109
DJ48_5112	PWY-1281	sulfoacetaldehyde degradation I
DJ48_5112	PWY-5482	pyruvate fermentation to acetate II
DJ48_5112	PWY-5485	pyruvate fermentation to acetate IV
DJ48_5112	PWY-5497	purine nucleobases degradation II (anaerobic)
DJ48_5112	PWY-6637	sulfolactate degradation II
DJ48_5116	PWY-7805	DJ48_5116
DJ48_5116	PWY-7807	DJ48_5116
DJ48_5122	PWY-4381	fatty acid biosynthesis initiation I
DJ48_5122	PWY-5743	3-hydroxypropanoate cycle
DJ48_5122	PWY-5744	glyoxylate assimilation
DJ48_5122	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
DJ48_5122	PWY-6722	candicidin biosynthesis
DJ48_5123	PWY-4381	fatty acid biosynthesis initiation I
DJ48_5123	PWY-5743	3-hydroxypropanoate cycle
DJ48_5123	PWY-5744	glyoxylate assimilation
DJ48_5123	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
DJ48_5123	PWY-6722	candicidin biosynthesis
DJ48_5124	PWY-1042	glycolysis IV (plant cytosol)
DJ48_5124	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
DJ48_5124	PWY-5484	glycolysis II (from fructose 6-phosphate)
DJ48_5124	PWY-7385	1,3-propanediol biosynthesis (engineered)
DJ48_5125	PWY-1042	glycolysis IV (plant cytosol)
DJ48_5125	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
DJ48_5125	PWY-5484	glycolysis II (from fructose 6-phosphate)
DJ48_5125	PWY-5723	Rubisco shunt
DJ48_5125	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
DJ48_5125	PWY-6886	1-butanol autotrophic biosynthesis
DJ48_5125	PWY-6901	superpathway of glucose and xylose degradation
DJ48_5125	PWY-7003	glycerol degradation to butanol
DJ48_5125	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
DJ48_5125	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
DJ48_5130	PWY-5913	TCA cycle VI (obligate autotrophs)
DJ48_5130	PWY-6549	L-glutamine biosynthesis III
DJ48_5130	PWY-6728	methylaspartate cycle
DJ48_5130	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
DJ48_5130	PWY-7124	ethylene biosynthesis V (engineered)
DJ48_5130	PWY-7254	TCA cycle VII (acetate-producers)
DJ48_5130	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
DJ48_5131	PWY-1622	formaldehyde assimilation I (serine pathway)
DJ48_5131	PWY-5392	reductive TCA cycle II
DJ48_5131	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
DJ48_5131	PWY-5690	TCA cycle II (plants and fungi)
DJ48_5131	PWY-5913	TCA cycle VI (obligate autotrophs)
DJ48_5131	PWY-6728	methylaspartate cycle
DJ48_5131	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
DJ48_5131	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
DJ48_5131	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
DJ48_5139	PWY-7851	DJ48_5139
DJ48_5140	PWY-1042	glycolysis IV (plant cytosol)
DJ48_5140	PWY-5484	glycolysis II (from fructose 6-phosphate)
DJ48_5140	PWY-6901	superpathway of glucose and xylose degradation
DJ48_5140	PWY-7003	glycerol degradation to butanol
DJ48_5141	PWY-6834	spermidine biosynthesis III
DJ48_5210	PWY-3781	aerobic respiration I (cytochrome c)
DJ48_5210	PWY-4302	aerobic respiration III (alternative oxidase pathway)
DJ48_5210	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
DJ48_5210	PWY-5690	TCA cycle II (plants and fungi)
DJ48_5210	PWY-6728	methylaspartate cycle
DJ48_5210	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
DJ48_5210	PWY-7254	TCA cycle VII (acetate-producers)
DJ48_5210	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
DJ48_5211	PWY-3781	aerobic respiration I (cytochrome c)
DJ48_5211	PWY-4302	aerobic respiration III (alternative oxidase pathway)
DJ48_5211	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
DJ48_5211	PWY-5690	TCA cycle II (plants and fungi)
DJ48_5211	PWY-6728	methylaspartate cycle
DJ48_5211	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
DJ48_5211	PWY-7254	TCA cycle VII (acetate-producers)
DJ48_5211	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
DJ48_522	PWY-6855	chitin degradation I (archaea)
DJ48_522	PWY-6902	chitin degradation II
DJ48_522	PWY-7822	DJ48_522
DJ48_5243	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
DJ48_5243	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
DJ48_5262	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
DJ48_5264	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
DJ48_5264	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
DJ48_5265	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
DJ48_5265	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
DJ48_5266	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
DJ48_5266	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
DJ48_5267	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
DJ48_5271	PWY-2161	folate polyglutamylation
DJ48_5294	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
DJ48_5297	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
DJ48_5298	PWY-5316	nicotine biosynthesis
DJ48_5298	PWY-7342	superpathway of nicotine biosynthesis
DJ48_5299	PWY-5316	nicotine biosynthesis
DJ48_5299	PWY-5381	pyridine nucleotide cycling (plants)
DJ48_5299	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
DJ48_5299	PWY-7342	superpathway of nicotine biosynthesis
DJ48_5300	PWY-5316	nicotine biosynthesis
DJ48_5300	PWY-7342	superpathway of nicotine biosynthesis
DJ48_5312	PWY-6700	queuosine biosynthesis
DJ48_5313	PWY-6700	queuosine biosynthesis
DJ48_5321	PWY-7805	DJ48_5321
DJ48_5321	PWY-7807	DJ48_5321
DJ48_5322	PWY-6605	adenine and adenosine salvage II
DJ48_5322	PWY-6610	adenine and adenosine salvage IV
DJ48_5322	PWY-7805	DJ48_5322
DJ48_5322	PWY-7807	DJ48_5322
DJ48_5332	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
DJ48_5333	PWY-7887	DJ48_5333
DJ48_5333	PWY-7892	DJ48_5333
DJ48_534	PWY-2781	<i>cis</i>-zeatin biosynthesis
DJ48_5349	PWY-7193	pyrimidine ribonucleosides salvage I
DJ48_5355	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
DJ48_5355	PWY-6153	autoinducer AI-2 biosynthesis I
DJ48_5355	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
DJ48_5358	PWY-3162	L-tryptophan degradation V (side chain pathway)
DJ48_5358	PWY-5057	L-valine degradation II
DJ48_5358	PWY-5076	L-leucine degradation III
DJ48_5358	PWY-5078	L-isoleucine degradation II
DJ48_5358	PWY-5079	L-phenylalanine degradation III
DJ48_5358	PWY-5082	L-methionine degradation III
DJ48_5358	PWY-5480	pyruvate fermentation to ethanol I
DJ48_5358	PWY-5486	pyruvate fermentation to ethanol II
DJ48_5358	PWY-5751	phenylethanol biosynthesis
DJ48_5358	PWY-6313	serotonin degradation
DJ48_5358	PWY-6333	acetaldehyde biosynthesis I
DJ48_5358	PWY-6342	noradrenaline and adrenaline degradation
DJ48_5358	PWY-6587	pyruvate fermentation to ethanol III
DJ48_5358	PWY-6802	salidroside biosynthesis
DJ48_5358	PWY-6871	3-methylbutanol biosynthesis
DJ48_5358	PWY-7013	L-1,2-propanediol degradation
DJ48_5358	PWY-7111	pyruvate fermentation to isobutanol (engineered)
DJ48_5358	PWY-7118	chitin degradation to ethanol
DJ48_5358	PWY-7396	butanol and isobutanol biosynthesis (engineered)
DJ48_5370	PWY-7158	L-phenylalanine degradation V
DJ48_5382	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
DJ48_5382	PWY-5491	diethylphosphate degradation
DJ48_5391	PWY-5669	phosphatidylethanolamine biosynthesis I
DJ48_5392	PWY-5269	cardiolipin biosynthesis II
DJ48_5392	PWY-5668	cardiolipin biosynthesis I
DJ48_5392	PWY-7817	DJ48_5392
DJ48_5394	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
DJ48_5396	PWY-5381	pyridine nucleotide cycling (plants)
DJ48_5396	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
DJ48_5396	PWY-7761	DJ48_5396
DJ48_54	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
DJ48_5400	PWY-3341	L-proline biosynthesis III
DJ48_5400	PWY-4981	L-proline biosynthesis II (from arginine)
DJ48_5400	PWY-6344	L-ornithine degradation II (Stickland reaction)
DJ48_5402	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
DJ48_5426	PWY-7039	phosphatidate metabolism, as a signaling molecule
DJ48_5426	PWY-7817	DJ48_5426
DJ48_5427	PWY-6556	pyrimidine ribonucleosides salvage II
DJ48_5427	PWY-7181	pyrimidine deoxyribonucleosides degradation
DJ48_5427	PWY-7193	pyrimidine ribonucleosides salvage I
DJ48_5427	PWY-7199	pyrimidine deoxyribonucleosides salvage
DJ48_5438	PWY-7560	methylerythritol phosphate pathway II
DJ48_544	PWY-381	nitrate reduction II (assimilatory)
DJ48_544	PWY-5675	nitrate reduction V (assimilatory)
DJ48_544	PWY-6549	L-glutamine biosynthesis III
DJ48_544	PWY-6963	ammonia assimilation cycle I
DJ48_544	PWY-6964	ammonia assimilation cycle II
DJ48_5451	PWY-6854	ethylene biosynthesis III (microbes)
DJ48_5459	PWY-6749	CMP-legionaminate biosynthesis I
DJ48_5464	PWY-2722	trehalose degradation IV
DJ48_5464	PWY-2723	trehalose degradation V
DJ48_5464	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
DJ48_5464	PWY-5661	GDP-glucose biosynthesis
DJ48_5464	PWY-621	sucrose degradation III (sucrose invertase)
DJ48_5464	PWY-7238	sucrose biosynthesis II
DJ48_5464	PWY-7385	1,3-propanediol biosynthesis (engineered)
DJ48_5472	PWY-2201	folate transformations I
DJ48_5472	PWY-3841	folate transformations II
DJ48_5473	PWY-2201	folate transformations I
DJ48_5473	PWY-3841	folate transformations II
DJ48_5473	PWY-7977	DJ48_5473
DJ48_5474	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
DJ48_5474	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
DJ48_5474	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
DJ48_5474	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
DJ48_5492	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
DJ48_55	PWY-6519	8-amino-7-oxononanoate biosynthesis I
DJ48_55	PWY-6578	8-amino-7-oxononanoate biosynthesis III
DJ48_55	PWY-7147	8-amino-7-oxononanoate biosynthesis II
DJ48_5517	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
DJ48_5517	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
DJ48_5525	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
DJ48_5525	PWY-6416	quinate degradation II
DJ48_5525	PWY-6707	gallate biosynthesis
DJ48_5526	PWY-7799	DJ48_5526
DJ48_5526	PWY-7800	DJ48_5526
DJ48_5544	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
DJ48_5544	PWY-2201	folate transformations I
DJ48_5544	PWY-3841	folate transformations II
DJ48_5544	PWY-5030	L-histidine degradation III
DJ48_5544	PWY-5497	purine nucleobases degradation II (anaerobic)
DJ48_5544	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
DJ48_5544	PWY-7909	DJ48_5544
DJ48_564	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
DJ48_57	PWY-6519	8-amino-7-oxononanoate biosynthesis I
DJ48_58	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
DJ48_59	PWY-6167	flavin biosynthesis II (archaea)
DJ48_59	PWY-6168	flavin biosynthesis III (fungi)
DJ48_61	PWY-6167	flavin biosynthesis II (archaea)
DJ48_61	PWY-6168	flavin biosynthesis III (fungi)
DJ48_61	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
DJ48_61	PWY-7991	DJ48_61
DJ48_62	PWY-6167	flavin biosynthesis II (archaea)
DJ48_62	PWY-6168	flavin biosynthesis III (fungi)
DJ48_62	PWY-7980	DJ48_62
DJ48_624	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
DJ48_624	PWY-5723	Rubisco shunt
DJ48_624	PWY-6891	thiazole biosynthesis II (Bacillus)
DJ48_624	PWY-6892	thiazole biosynthesis I (E. coli)
DJ48_624	PWY-6901	superpathway of glucose and xylose degradation
DJ48_624	PWY-7560	methylerythritol phosphate pathway II
DJ48_63	PWY-7991	DJ48_63
DJ48_654	PWY-5028	L-histidine degradation II
DJ48_654	PWY-5030	L-histidine degradation III
DJ48_655	PWY-5028	L-histidine degradation II
DJ48_655	PWY-5030	L-histidine degradation III
DJ48_656	PWY-5028	L-histidine degradation II
DJ48_656	PWY-5030	L-histidine degradation III
DJ48_701	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
DJ48_701	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
DJ48_701	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
DJ48_731	PWY-1881	formate oxidation to CO<sub>2</sub>
DJ48_731	PWY-5497	purine nucleobases degradation II (anaerobic)
DJ48_731	PWY-6696	oxalate degradation III
DJ48_731	PWY-7985	DJ48_731
DJ48_735	PWY-6823	molybdenum cofactor biosynthesis
DJ48_739	PWY-6823	molybdenum cofactor biosynthesis
DJ48_740	PWY-6823	molybdenum cofactor biosynthesis
DJ48_740	PWY-7887	DJ48_740
DJ48_750	PWY-5367	petroselinate biosynthesis
DJ48_750	PWY-5971	palmitate biosynthesis II (bacteria and plants)
DJ48_750	PWY-5973	<i>cis</i>-vaccenate biosynthesis
DJ48_750	PWY-5989	stearate biosynthesis II (bacteria and plants)
DJ48_750	PWY-5994	palmitate biosynthesis I (animals and fungi)
DJ48_750	PWY-6113	superpathway of mycolate biosynthesis
DJ48_750	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
DJ48_750	PWY-6519	8-amino-7-oxononanoate biosynthesis I
DJ48_750	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
DJ48_750	PWY-7663	gondoate biosynthesis (anaerobic)
DJ48_750	PWY-7664	oleate biosynthesis IV (anaerobic)
DJ48_750	PWY-7858	DJ48_750
DJ48_750	PWYG-321	mycolate biosynthesis
DJ48_756	PWY-4983	L-citrulline-nitric oxide cycle
DJ48_756	PWY-4984	urea cycle
DJ48_756	PWY-5	canavanine biosynthesis
DJ48_756	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
DJ48_756	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
DJ48_85	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
DJ48_86	PWY-4202	arsenate detoxification I (glutaredoxin)
DJ48_86	PWY-5532	adenosine nucleotides degradation IV
DJ48_86	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
DJ48_86	PWY-6608	guanosine nucleotides degradation III
DJ48_86	PWY-6609	adenine and adenosine salvage III
DJ48_86	PWY-6611	adenine and adenosine salvage V
DJ48_86	PWY-6620	guanine and guanosine salvage
DJ48_86	PWY-6627	salinosporamide A biosynthesis
DJ48_86	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
DJ48_86	PWY-7179	purine deoxyribonucleosides degradation I
DJ48_86	PWY-7179-1	purine deoxyribonucleosides degradation
DJ48_87	PWY-7181	pyrimidine deoxyribonucleosides degradation
DJ48_892	PWY-6174	mevalonate pathway II (archaea)
DJ48_892	PWY-7391	isoprene biosynthesis II (engineered)
DJ48_892	PWY-7524	mevalonate pathway III (archaea)
DJ48_892	PWY-922	mevalonate pathway I
DJ48_915	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
DJ48_916	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
DJ48_917	PWY-6891	thiazole biosynthesis II (Bacillus)
DJ48_917	PWY-6892	thiazole biosynthesis I (E. coli)
DJ48_917	PWY-7560	methylerythritol phosphate pathway II
DJ48_918	PWY-6891	thiazole biosynthesis II (Bacillus)
DJ48_918	PWY-6892	thiazole biosynthesis I (E. coli)
DJ48_918	PWY-7560	methylerythritol phosphate pathway II
DJ48_920	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
DJ48_920	PWY-5723	Rubisco shunt
DJ48_922	PWY-4261	glycerol degradation I
DJ48_922	PWY-5530	sorbitol biosynthesis II
DJ48_941	PWY-7560	methylerythritol phosphate pathway II
DJ48_96	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
DJ48_96	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
DJ48_965	PWY-1042	glycolysis IV (plant cytosol)
DJ48_965	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
DJ48_965	PWY-5484	glycolysis II (from fructose 6-phosphate)
DJ48_965	PWY-5723	Rubisco shunt
DJ48_965	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
DJ48_965	PWY-6886	1-butanol autotrophic biosynthesis
DJ48_965	PWY-6901	superpathway of glucose and xylose degradation
DJ48_965	PWY-7003	glycerol degradation to butanol
DJ48_965	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
DJ48_965	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)