DJ48_1 SM00861 Transketolase, pyrimidine binding domain DJ48_1004 SM00347 helix_turn_helix multiple antibiotic resistance protein DJ48_1013 SM00287 Bacterial SH3 domain homologues DJ48_1013 SM00644 DJ48_1013 DJ48_1016 SM00342 helix_turn_helix, arabinose operon control protein DJ48_1028 SM00344 helix_turn_helix ASNC type DJ48_1036 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DJ48_1042 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins DJ48_1047 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DJ48_1047 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ48_1047 SM00319 Homologues of the ligand binding domain of Tar DJ48_1054 SM00028 Tetratricopeptide repeats DJ48_1055 SM00354 helix_turn _helix lactose operon repressor DJ48_1073 SM00347 helix_turn_helix multiple antibiotic resistance protein DJ48_1075 SM00448 cheY-homologous receiver domain DJ48_1075 SM00862 Transcriptional regulatory protein, C terminal DJ48_1076 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ48_1076 SM00387 Histidine kinase-like ATPases DJ48_1076 SM00388 His Kinase A (phosphoacceptor) domain DJ48_1078 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DJ48_1080 SM00382 ATPases associated with a variety of cellular activities DJ48_1090 SM00530 Helix-turn-helix XRE-family like proteins DJ48_11 SM00091 PAS domain DJ48_11 SM00382 ATPases associated with a variety of cellular activities DJ48_1100 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ48_1100 SM00387 Histidine kinase-like ATPases DJ48_1100 SM00388 His Kinase A (phosphoacceptor) domain DJ48_1101 SM00448 cheY-homologous receiver domain DJ48_1101 SM00862 Transcriptional regulatory protein, C terminal DJ48_1108 SM00347 helix_turn_helix multiple antibiotic resistance protein DJ48_1113 SM00342 helix_turn_helix, arabinose operon control protein DJ48_1120 SM00344 helix_turn_helix ASNC type DJ48_1124 SM00028 Tetratricopeptide repeats DJ48_1127 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DJ48_1130 SM00226 Low molecular weight phosphatase family DJ48_1135 SM00382 ATPases associated with a variety of cellular activities DJ48_1160 SM01060 DJ48_1160 DJ48_117 SM00849 Metallo-beta-lactamase superfamily DJ48_1170 SM00387 Histidine kinase-like ATPases DJ48_1171 SM00448 cheY-homologous receiver domain DJ48_1176 SM00919 Malic enzyme, NAD binding domain DJ48_1176 SM01274 DJ48_1176 DJ48_1184 SM00530 Helix-turn-helix XRE-family like proteins DJ48_1185 SM00870 DJ48_1185 DJ48_120 SM00345 helix_turn_helix gluconate operon transcriptional repressor DJ48_120 SM00866 DJ48_120 DJ48_1203 SM00849 Metallo-beta-lactamase superfamily DJ48_1216 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DJ48_122 SM01061 CAT RNA binding domain DJ48_1220 SM00346 helix_turn_helix isocitrate lyase regulation DJ48_1221 SM00796 Allophanate hydrolase subunit 1 DJ48_1222 SM00797 Allophanate hydrolase subunit 2 DJ48_1250 SM00448 cheY-homologous receiver domain DJ48_1250 SM00862 Transcriptional regulatory protein, C terminal DJ48_1251 SM00387 Histidine kinase-like ATPases DJ48_1251 SM00388 His Kinase A (phosphoacceptor) domain DJ48_1255 SM00345 helix_turn_helix gluconate operon transcriptional repressor DJ48_1260 SM00342 helix_turn_helix, arabinose operon control protein DJ48_1260 SM00871 Bacterial transcription activator, effector binding domain DJ48_1265 SM00382 ATPases associated with a variety of cellular activities DJ48_1267 SM00345 helix_turn_helix gluconate operon transcriptional repressor DJ48_1268 SM00382 ATPases associated with a variety of cellular activities DJ48_1273 SM00889 Elongation factor G, domain IV DJ48_1274 SM00347 helix_turn_helix multiple antibiotic resistance protein DJ48_1285 SM01060 DJ48_1285 DJ48_129 SM00267 diguanylate cyclase DJ48_13 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DJ48_1304 SM00850 LytTr DNA-binding domain DJ48_1309 SM00530 Helix-turn-helix XRE-family like proteins DJ48_1311 SM00098 Alkaline phosphatase homologues DJ48_1315 SM00346 helix_turn_helix isocitrate lyase regulation DJ48_1318 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase DJ48_1322 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DJ48_1328 SM01133 DJ48_1328 DJ48_1332 SM00382 ATPases associated with a variety of cellular activities DJ48_1343 SM00287 Bacterial SH3 domain homologues DJ48_135 SM01007 Class II Aldolase and Adducin N-terminal domain DJ48_1351 SM00830 Chorismate mutase type II DJ48_1361 SM00382 ATPases associated with a variety of cellular activities DJ48_1379 SM00028 Tetratricopeptide repeats DJ48_1387 SM00062 Bacterial periplasmic substrate-binding proteins DJ48_1398 SM00345 helix_turn_helix gluconate operon transcriptional repressor DJ48_1399 SM00382 ATPases associated with a variety of cellular activities DJ48_1437 SM00448 cheY-homologous receiver domain DJ48_1437 SM00862 Transcriptional regulatory protein, C terminal DJ48_1438 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ48_1438 SM00387 Histidine kinase-like ATPases DJ48_1438 SM00388 His Kinase A (phosphoacceptor) domain DJ48_1439 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain DJ48_1446 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain DJ48_1460 SM00091 PAS domain DJ48_1460 SM00382 ATPases associated with a variety of cellular activities DJ48_1464 SM01130 DJ48_1464 DJ48_1470 SM01131 DJ48_1470 DJ48_1478 SM00341 Helicase and RNase D C-terminal DJ48_1478 SM00487 DEAD-like helicases superfamily DJ48_1478 SM00490 helicase superfamily c-terminal domain DJ48_1478 SM00956 DJ48_1478 DJ48_1493 SM00849 Metallo-beta-lactamase superfamily DJ48_1502 SM00060 Fibronectin type 3 domain DJ48_1502 SM00495 Chitin-binding domain type 3 DJ48_1509 SM00116 Domain in cystathionine beta-synthase and other proteins. DJ48_1509 SM00382 ATPases associated with a variety of cellular activities DJ48_152 SM00382 ATPases associated with a variety of cellular activities DJ48_1520 SM00861 Transketolase, pyrimidine binding domain DJ48_1531 SM00420 helix_turn_helix, Deoxyribose operon repressor DJ48_1531 SM01134 DJ48_1531 DJ48_1535 SM00382 ATPases associated with a variety of cellular activities DJ48_1558 SM00345 helix_turn_helix gluconate operon transcriptional repressor DJ48_1562 SM00871 Bacterial transcription activator, effector binding domain DJ48_1566 SM00642 Alpha-amylase domain DJ48_1586 SM00465 GIY-YIG type nucleases (URI domain) DJ48_159 SM00382 ATPases associated with a variety of cellular activities DJ48_160 SM00642 Alpha-amylase domain DJ48_1608 SM00480 DNA polymerase III beta subunit DJ48_161 SM00642 Alpha-amylase domain DJ48_1619 SM00345 helix_turn_helix gluconate operon transcriptional repressor DJ48_1628 SM00422 helix_turn_helix, mercury resistance DJ48_1641 SM00740 DJ48_1641 DJ48_1642 SM00829 Enoylreductase DJ48_1645 SM00387 Histidine kinase-like ATPases DJ48_1645 SM00388 His Kinase A (phosphoacceptor) domain DJ48_1648 SM00382 ATPases associated with a variety of cellular activities DJ48_165 SM00354 helix_turn _helix lactose operon repressor DJ48_1653 SM00091 PAS domain DJ48_1653 SM00387 Histidine kinase-like ATPases DJ48_1653 SM00388 His Kinase A (phosphoacceptor) domain DJ48_1679 SM01209 DJ48_1679 DJ48_168 SM00387 Histidine kinase-like ATPases DJ48_168 SM00388 His Kinase A (phosphoacceptor) domain DJ48_1680 SM00345 helix_turn_helix gluconate operon transcriptional repressor DJ48_1686 SM00382 ATPases associated with a variety of cellular activities DJ48_1689 SM00382 ATPases associated with a variety of cellular activities DJ48_1691 SM00387 Histidine kinase-like ATPases DJ48_1693 SM00448 cheY-homologous receiver domain DJ48_1693 SM00862 Transcriptional regulatory protein, C terminal DJ48_17 SM00861 Transketolase, pyrimidine binding domain DJ48_1703 SM00345 helix_turn_helix gluconate operon transcriptional repressor DJ48_1706 SM00342 helix_turn_helix, arabinose operon control protein DJ48_1712 SM00422 helix_turn_helix, mercury resistance DJ48_1712 SM00871 Bacterial transcription activator, effector binding domain DJ48_1716 SM00382 ATPases associated with a variety of cellular activities DJ48_1728 SM00448 cheY-homologous receiver domain DJ48_1728 SM00862 Transcriptional regulatory protein, C terminal DJ48_1729 SM00387 Histidine kinase-like ATPases DJ48_1729 SM00388 His Kinase A (phosphoacceptor) domain DJ48_1741 SM00878 Biotin carboxylase C-terminal domain DJ48_1747 SM00382 ATPases associated with a variety of cellular activities DJ48_1750 SM00450 Rhodanese Homology Domain DJ48_1750 SM00849 Metallo-beta-lactamase superfamily DJ48_1752 SM00860 SMI1 / KNR4 family DJ48_1754 SM00052 Putative diguanylate phosphodiesterase DJ48_1754 SM00091 PAS domain DJ48_1754 SM00267 diguanylate cyclase DJ48_1756 SM00382 ATPases associated with a variety of cellular activities DJ48_1760 SM00646 DJ48_1760 DJ48_1765 SM00530 Helix-turn-helix XRE-family like proteins DJ48_177 SM00267 diguanylate cyclase DJ48_1779 SM00354 helix_turn _helix lactose operon repressor DJ48_1795 SM00855 Phosphoglycerate mutase family DJ48_1796 SM00347 helix_turn_helix multiple antibiotic resistance protein DJ48_1801 SM00382 ATPases associated with a variety of cellular activities DJ48_1806 SM00487 DEAD-like helicases superfamily DJ48_1806 SM00490 helicase superfamily c-terminal domain DJ48_1809 SM00849 Metallo-beta-lactamase superfamily DJ48_1814 SM01207 DJ48_1814 DJ48_1830 SM00530 Helix-turn-helix XRE-family like proteins DJ48_1832 SM00646 DJ48_1832 DJ48_1834 SM00382 ATPases associated with a variety of cellular activities DJ48_1835 SM00382 ATPases associated with a variety of cellular activities DJ48_1842 SM00859 Semialdehyde dehydrogenase, NAD binding domain DJ48_185 SM00052 Putative diguanylate phosphodiesterase DJ48_1855 SM00357 Cold shock protein domain DJ48_1863 SM00530 Helix-turn-helix XRE-family like proteins DJ48_1868 SM01059 Chloramphenicol acetyltransferase DJ48_1873 SM00849 Metallo-beta-lactamase superfamily DJ48_1879 SM00849 Metallo-beta-lactamase superfamily DJ48_1890 SM00382 ATPases associated with a variety of cellular activities DJ48_1891 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain DJ48_1893 SM00363 S4 RNA-binding domain DJ48_1901 SM00411 bacterial (prokaryotic) histone like domain DJ48_1905 SM00923 MbtH-like protein DJ48_1906 SM00823 Phosphopantetheine attachment site DJ48_1906 SM00824 Thioesterase DJ48_1913 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DJ48_1942 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. DJ48_1953 SM00530 Helix-turn-helix XRE-family like proteins DJ48_1958 SM00860 SMI1 / KNR4 family DJ48_1960 SM00014 Acid phosphatase homologues DJ48_1963 SM00219 Tyrosine kinase, catalytic domain DJ48_1971 SM00382 ATPases associated with a variety of cellular activities DJ48_1974 SM00882 Coenzyme A transferase DJ48_1975 SM00882 Coenzyme A transferase DJ48_1978 SM00387 Histidine kinase-like ATPases DJ48_1978 SM00388 His Kinase A (phosphoacceptor) domain DJ48_198 SM00849 Metallo-beta-lactamase superfamily DJ48_1981 SM01091 Transporter associated domain DJ48_1989 SM00382 ATPases associated with a variety of cellular activities DJ48_2 SM00363 S4 RNA-binding domain DJ48_2002 SM00829 Enoylreductase DJ48_2005 SM00421 helix_turn_helix, Lux Regulon DJ48_2005 SM00448 cheY-homologous receiver domain DJ48_2006 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. DJ48_2028 SM00563 Phosphate acyltransferases DJ48_204 SM00861 Transketolase, pyrimidine binding domain DJ48_2040 SM00382 ATPases associated with a variety of cellular activities DJ48_2056 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ48_2056 SM00387 Histidine kinase-like ATPases DJ48_2056 SM00388 His Kinase A (phosphoacceptor) domain DJ48_2057 SM00448 cheY-homologous receiver domain DJ48_2057 SM00862 Transcriptional regulatory protein, C terminal DJ48_2067 SM00857 Resolvase, N terminal domain DJ48_2074 SM00028 Tetratricopeptide repeats DJ48_2076 SM00382 ATPases associated with a variety of cellular activities DJ48_2085 SM00028 Tetratricopeptide repeats DJ48_2086 SM00028 Tetratricopeptide repeats DJ48_2090 SM00836 DALR anticodon binding domain DJ48_2090 SM01016 Arginyl tRNA synthetase N terminal dom DJ48_2094 SM00567 E-Z type HEAT repeats DJ48_2094 SM00932 Scaffold protein Nfu/NifU N terminal DJ48_2101 SM00382 ATPases associated with a variety of cellular activities DJ48_2102 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DJ48_2113 SM00894 Excalibur calcium-binding domain DJ48_2126 SM00852 Probable molybdopterin binding domain DJ48_2128 SM00729 Elongator protein 3, MiaB family, Radical SAM DJ48_2129 SM00100 Cyclic nucleotide-monophosphate binding domain DJ48_2129 SM00419 helix_turn_helix, cAMP Regulatory protein DJ48_2131 SM00382 ATPases associated with a variety of cellular activities DJ48_2132 SM00345 helix_turn_helix gluconate operon transcriptional repressor DJ48_2136 SM00926 Molybdopterin oxidoreductase Fe4S4 domain DJ48_2141 SM00460 Transglutaminase/protease-like homologues DJ48_2144 SM00849 Metallo-beta-lactamase superfamily DJ48_2148 SM00829 Enoylreductase DJ48_2152 SM00487 DEAD-like helicases superfamily DJ48_2152 SM00490 helicase superfamily c-terminal domain DJ48_2175 SM00345 helix_turn_helix gluconate operon transcriptional repressor DJ48_2181 SM01005 Alanine racemase, C-terminal domain DJ48_2184 SM00855 Phosphoglycerate mutase family DJ48_2185 SM00244 prohibitin homologues DJ48_220 SM00838 Elongation factor G C-terminus DJ48_2200 SM01091 Transporter associated domain DJ48_2205 SM00155 Phospholipase D. Active site motifs. DJ48_2215 SM00855 Phosphoglycerate mutase family DJ48_2236 SM00833 Cobalamin synthesis protein cobW C-terminal domain DJ48_2248 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DJ48_2248 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ48_225 SM00670 Large family of predicted nucleotide-binding domains DJ48_2255 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DJ48_2257 SM00966 SpoVT / AbrB like domain DJ48_2262 SM00460 Transglutaminase/protease-like homologues DJ48_2280 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ48_2280 SM00387 Histidine kinase-like ATPases DJ48_2280 SM00388 His Kinase A (phosphoacceptor) domain DJ48_2281 SM00448 cheY-homologous receiver domain DJ48_2281 SM00862 Transcriptional regulatory protein, C terminal DJ48_229 SM00878 Biotin carboxylase C-terminal domain DJ48_2296 SM00387 Histidine kinase-like ATPases DJ48_2296 SM00388 His Kinase A (phosphoacceptor) domain DJ48_2297 SM00448 cheY-homologous receiver domain DJ48_2297 SM00862 Transcriptional regulatory protein, C terminal DJ48_2298 SM00382 ATPases associated with a variety of cellular activities DJ48_23 SM00062 Bacterial periplasmic substrate-binding proteins DJ48_23 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. DJ48_2300 SM00287 Bacterial SH3 domain homologues DJ48_2306 SM00382 ATPases associated with a variety of cellular activities DJ48_2307 SM00382 ATPases associated with a variety of cellular activities DJ48_2311 SM00347 helix_turn_helix multiple antibiotic resistance protein DJ48_2318 SM00382 ATPases associated with a variety of cellular activities DJ48_2319 SM00382 ATPases associated with a variety of cellular activities DJ48_2326 SM00833 Cobalamin synthesis protein cobW C-terminal domain DJ48_2346 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain DJ48_2346 SM00437 Bacterial DNA topoisomerase I DNA-binding domain DJ48_2346 SM00493 DJ48_2346 DJ48_2348 SM00287 Bacterial SH3 domain homologues DJ48_2350 SM01011 Aminopeptidase P, N-terminal domain DJ48_2356 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain DJ48_2358 SM01133 DJ48_2358 DJ48_2369 SM00450 Rhodanese Homology Domain DJ48_2372 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ48_2372 SM00387 Histidine kinase-like ATPases DJ48_2372 SM00388 His Kinase A (phosphoacceptor) domain DJ48_2373 SM00448 cheY-homologous receiver domain DJ48_2373 SM00862 Transcriptional regulatory protein, C terminal DJ48_2375 SM00729 Elongator protein 3, MiaB family, Radical SAM DJ48_2385 SM00850 LytTr DNA-binding domain DJ48_2392 SM00854 Bacterial capsule synthesis protein PGA_cap DJ48_2393 SM00854 Bacterial capsule synthesis protein PGA_cap DJ48_242 SM00855 Phosphoglycerate mutase family DJ48_2428 SM00047 Lysozyme subfamily 2 DJ48_2429 SM00646 DJ48_2429 DJ48_2440 SM00487 DEAD-like helicases superfamily DJ48_2440 SM00490 helicase superfamily c-terminal domain DJ48_2441 SM00448 cheY-homologous receiver domain DJ48_2442 SM00387 Histidine kinase-like ATPases DJ48_2443 SM00919 Malic enzyme, NAD binding domain DJ48_2443 SM01274 DJ48_2443 DJ48_2447 SM00155 Phospholipase D. Active site motifs. DJ48_2450 SM00382 ATPases associated with a variety of cellular activities DJ48_2460 SM00530 Helix-turn-helix XRE-family like proteins DJ48_2478 SM00833 Cobalamin synthesis protein cobW C-terminal domain DJ48_2480 SM00345 helix_turn_helix gluconate operon transcriptional repressor DJ48_2480 SM00895 DJ48_2480 DJ48_2488 SM00347 helix_turn_helix multiple antibiotic resistance protein DJ48_2492 SM00855 Phosphoglycerate mutase family DJ48_2495 SM00835 Cupin DJ48_2499 SM00849 Metallo-beta-lactamase superfamily DJ48_2499 SM01027 Beta-Casp domain DJ48_25 SM00382 ATPases associated with a variety of cellular activities DJ48_250 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. DJ48_2502 SM00382 ATPases associated with a variety of cellular activities DJ48_2507 SM00530 Helix-turn-helix XRE-family like proteins DJ48_2518 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain DJ48_2520 SM00382 ATPases associated with a variety of cellular activities DJ48_2520 SM00962 SRP54-type protein, GTPase domain DJ48_2535 SM00028 Tetratricopeptide repeats DJ48_2538 SM00028 Tetratricopeptide repeats DJ48_2544 SM00260 Two component signalling adaptor domain DJ48_2544 SM00448 cheY-homologous receiver domain DJ48_2551 SM00382 ATPases associated with a variety of cellular activities DJ48_256 SM00530 Helix-turn-helix XRE-family like proteins DJ48_2566 SM00138 Methyltransferase, chemotaxis proteins DJ48_2570 SM00073 Histidine Phosphotransfer domain DJ48_2570 SM00260 Two component signalling adaptor domain DJ48_2570 SM00387 Histidine kinase-like ATPases DJ48_2570 SM01231 DJ48_2570 DJ48_2571 SM00448 cheY-homologous receiver domain DJ48_259 SM00530 Helix-turn-helix XRE-family like proteins DJ48_2590 SM00422 helix_turn_helix, mercury resistance DJ48_2590 SM00871 Bacterial transcription activator, effector binding domain DJ48_2591 SM00849 Metallo-beta-lactamase superfamily DJ48_260 SM00530 Helix-turn-helix XRE-family like proteins DJ48_2601 SM00357 Cold shock protein domain DJ48_2622 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs DJ48_2622 SM00475 5'-3' exonuclease DJ48_2628 SM00450 Rhodanese Homology Domain DJ48_2641 SM00491 DJ48_2641 DJ48_2643 SM00981 DJ48_2643 DJ48_265 SM00382 ATPases associated with a variety of cellular activities DJ48_2654 SM00060 Fibronectin type 3 domain DJ48_2656 SM00478 endonuclease III DJ48_2656 SM00525 DJ48_2656 DJ48_2661 SM00479 DJ48_2661 DJ48_2661 SM00491 DJ48_2661 DJ48_2670 SM00851 MGS-like domain DJ48_2674 SM00986 Uracil DNA glycosylase superfamily DJ48_2674 SM00987 UreE urease accessory protein, C-terminal domain DJ48_2683 SM00914 DJ48_2683 DJ48_2684 SM00028 Tetratricopeptide repeats DJ48_2688 SM00562 DJ48_2688 DJ48_2693 SM00411 bacterial (prokaryotic) histone like domain DJ48_2704 SM01240 DJ48_2704 DJ48_2705 SM00316 Ribosomal protein S1-like RNA-binding domain DJ48_2708 SM00870 DJ48_2708 DJ48_2710 SM00644 DJ48_2710 DJ48_2713 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DJ48_2715 SM00422 helix_turn_helix, mercury resistance DJ48_2717 SM00257 Lysin motif DJ48_2719 SM00487 DEAD-like helicases superfamily DJ48_2719 SM00490 helicase superfamily c-terminal domain DJ48_2724 SM00257 Lysin motif DJ48_2726 SM00091 PAS domain DJ48_2726 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ48_2726 SM00387 Histidine kinase-like ATPases DJ48_2726 SM00388 His Kinase A (phosphoacceptor) domain DJ48_2727 SM00448 cheY-homologous receiver domain DJ48_2727 SM00862 Transcriptional regulatory protein, C terminal DJ48_2731 SM00363 S4 RNA-binding domain DJ48_2742 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ48_2742 SM00387 Histidine kinase-like ATPases DJ48_2742 SM00388 His Kinase A (phosphoacceptor) domain DJ48_2746 SM00091 PAS domain DJ48_2746 SM00387 Histidine kinase-like ATPases DJ48_2746 SM00388 His Kinase A (phosphoacceptor) domain DJ48_2765 SM00421 helix_turn_helix, Lux Regulon DJ48_2765 SM00448 cheY-homologous receiver domain DJ48_2766 SM00387 Histidine kinase-like ATPases DJ48_279 SM00530 Helix-turn-helix XRE-family like proteins DJ48_2802 SM01329 DJ48_2802 DJ48_2803 SM00917 LeuA allosteric (dimerisation) domain DJ48_2817 SM00347 helix_turn_helix multiple antibiotic resistance protein DJ48_2842 SM00344 helix_turn_helix ASNC type DJ48_2846 SM00382 ATPases associated with a variety of cellular activities DJ48_2848 SM00382 ATPases associated with a variety of cellular activities DJ48_2849 SM00345 helix_turn_helix gluconate operon transcriptional repressor DJ48_2852 SM00465 GIY-YIG type nucleases (URI domain) DJ48_2852 SM00496 Intron-encoded nuclease repeat 2 DJ48_2865 SM00388 His Kinase A (phosphoacceptor) domain DJ48_2866 SM00387 Histidine kinase-like ATPases DJ48_2870 SM00347 helix_turn_helix multiple antibiotic resistance protein DJ48_2871 SM00387 Histidine kinase-like ATPases DJ48_2871 SM00388 His Kinase A (phosphoacceptor) domain DJ48_2875 SM01007 Class II Aldolase and Adducin N-terminal domain DJ48_2876 SM00365 Leucine-rich repeat, SDS22-like subfamily DJ48_2876 SM00369 Leucine-rich repeats, typical (most populated) subfamily DJ48_2879 SM00420 helix_turn_helix, Deoxyribose operon repressor DJ48_2879 SM01134 DJ48_2879 DJ48_288 SM00507 HNH nucleases DJ48_2894 SM00822 DJ48_2894 DJ48_2908 SM00345 helix_turn_helix gluconate operon transcriptional repressor DJ48_2908 SM00895 DJ48_2908 DJ48_2909 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ48_2909 SM00387 Histidine kinase-like ATPases DJ48_2909 SM00388 His Kinase A (phosphoacceptor) domain DJ48_2910 SM00448 cheY-homologous receiver domain DJ48_2910 SM00862 Transcriptional regulatory protein, C terminal DJ48_2920 SM00014 Acid phosphatase homologues DJ48_2924 SM00382 ATPases associated with a variety of cellular activities DJ48_2928 SM00530 Helix-turn-helix XRE-family like proteins DJ48_2946 SM00530 Helix-turn-helix XRE-family like proteins DJ48_2947 SM00861 Transketolase, pyrimidine binding domain DJ48_2970 SM00635 Bacterial Ig-like domain 2 DJ48_3001 SM00954 Region found in RelA / SpoT proteins DJ48_3003 SM01118 DJ48_3003 DJ48_3010 SM00155 Phospholipase D. Active site motifs. DJ48_3017 SM00382 ATPases associated with a variety of cellular activities DJ48_3018 SM00382 ATPases associated with a variety of cellular activities DJ48_3026 SM00825 Beta-ketoacyl synthase DJ48_3033 SM00382 ATPases associated with a variety of cellular activities DJ48_3033 SM01086 C-terminal, D2-small domain, of ClpB protein DJ48_3042 SM00316 Ribosomal protein S1-like RNA-binding domain DJ48_3044 SM00530 Helix-turn-helix XRE-family like proteins DJ48_3045 SM00642 Alpha-amylase domain DJ48_3047 SM01060 DJ48_3047 DJ48_3070 SM00357 Cold shock protein domain DJ48_3078 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DJ48_3078 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ48_308 SM00644 DJ48_308 DJ48_3084 SM00448 cheY-homologous receiver domain DJ48_3084 SM00862 Transcriptional regulatory protein, C terminal DJ48_3085 SM00387 Histidine kinase-like ATPases DJ48_3085 SM00388 His Kinase A (phosphoacceptor) domain DJ48_3087 SM00342 helix_turn_helix, arabinose operon control protein DJ48_3087 SM00871 Bacterial transcription activator, effector binding domain DJ48_3090 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DJ48_3101 SM00725 NEAr Transporter domain DJ48_3106 SM00849 Metallo-beta-lactamase superfamily DJ48_3108 SM00354 helix_turn _helix lactose operon repressor DJ48_311 SM00530 Helix-turn-helix XRE-family like proteins DJ48_3130 SM00422 helix_turn_helix, mercury resistance DJ48_3143 SM00382 ATPases associated with a variety of cellular activities DJ48_3146 SM00347 helix_turn_helix multiple antibiotic resistance protein DJ48_3155 SM00347 helix_turn_helix multiple antibiotic resistance protein DJ48_3165 SM00530 Helix-turn-helix XRE-family like proteins DJ48_3170 SM00028 Tetratricopeptide repeats DJ48_3175 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DJ48_3183 SM00829 Enoylreductase DJ48_319 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains DJ48_3190 SM00387 Histidine kinase-like ATPases DJ48_3190 SM00388 His Kinase A (phosphoacceptor) domain DJ48_3190 SM00448 cheY-homologous receiver domain DJ48_3191 SM00138 Methyltransferase, chemotaxis proteins DJ48_3192 SM00331 Sigma factor PP2C-like phosphatases DJ48_3192 SM00448 cheY-homologous receiver domain DJ48_3204 SM00460 Transglutaminase/protease-like homologues DJ48_3209 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DJ48_3216 SM01120 DJ48_3216 DJ48_3223 SM00347 helix_turn_helix multiple antibiotic resistance protein DJ48_3248 SM00422 helix_turn_helix, mercury resistance DJ48_325 SM00740 DJ48_325 DJ48_3254 SM00448 cheY-homologous receiver domain DJ48_3255 SM00091 PAS domain DJ48_3255 SM00387 Histidine kinase-like ATPases DJ48_3258 SM00860 SMI1 / KNR4 family DJ48_326 SM00740 DJ48_326 DJ48_3262 SM00382 ATPases associated with a variety of cellular activities DJ48_3276 SM00646 DJ48_3276 DJ48_3288 SM00635 Bacterial Ig-like domain 2 DJ48_3291 SM00957 SecA DEAD-like domain DJ48_3291 SM00958 SecA preprotein cross-linking domain DJ48_3298 SM00729 Elongator protein 3, MiaB family, Radical SAM DJ48_3300 SM00644 DJ48_3300 DJ48_3316 SM00382 ATPases associated with a variety of cellular activities DJ48_3318 SM00062 Bacterial periplasmic substrate-binding proteins DJ48_3318 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. DJ48_3319 SM00382 ATPases associated with a variety of cellular activities DJ48_3321 SM00382 ATPases associated with a variety of cellular activities DJ48_3327 SM01060 DJ48_3327 DJ48_334 SM00842 Cell division protein FtsA DJ48_3340 SM00344 helix_turn_helix ASNC type DJ48_335 SM00864 Tubulin/FtsZ family, GTPase domain DJ48_335 SM00865 Tubulin/FtsZ family, C-terminal domain DJ48_3360 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen DJ48_3371 SM00382 ATPases associated with a variety of cellular activities DJ48_3373 SM00287 Bacterial SH3 domain homologues DJ48_3383 SM00829 Enoylreductase DJ48_3388 SM00450 Rhodanese Homology Domain DJ48_3392 SM00450 Rhodanese Homology Domain DJ48_3392 SM00849 Metallo-beta-lactamase superfamily DJ48_3393 SM00450 Rhodanese Homology Domain DJ48_3395 SM00450 Rhodanese Homology Domain DJ48_3398 SM00347 helix_turn_helix multiple antibiotic resistance protein DJ48_34 SM00849 Metallo-beta-lactamase superfamily DJ48_3411 SM00354 helix_turn _helix lactose operon repressor DJ48_3413 SM00640 Glycosyl hydrolases family 32 DJ48_3421 SM00347 helix_turn_helix multiple antibiotic resistance protein DJ48_3438 SM00382 ATPases associated with a variety of cellular activities DJ48_344 SM00363 S4 RNA-binding domain DJ48_3440 SM00287 Bacterial SH3 domain homologues DJ48_3443 SM00116 Domain in cystathionine beta-synthase and other proteins. DJ48_3473 SM00899 DJ48_3473 DJ48_349 SM00363 S4 RNA-binding domain DJ48_3492 SM00530 Helix-turn-helix XRE-family like proteins DJ48_3502 SM00530 Helix-turn-helix XRE-family like proteins DJ48_3504 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DJ48_3511 SM00770 Zinc dependent phospholipase C (alpha toxin) DJ48_3513 SM00829 Enoylreductase DJ48_3520 SM00382 ATPases associated with a variety of cellular activities DJ48_3523 SM00354 helix_turn _helix lactose operon repressor DJ48_3526 SM00347 helix_turn_helix multiple antibiotic resistance protein DJ48_3528 SM00382 ATPases associated with a variety of cellular activities DJ48_3529 SM00382 ATPases associated with a variety of cellular activities DJ48_3537 SM00448 cheY-homologous receiver domain DJ48_3537 SM00862 Transcriptional regulatory protein, C terminal DJ48_3538 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ48_3538 SM00387 Histidine kinase-like ATPases DJ48_3538 SM00388 His Kinase A (phosphoacceptor) domain DJ48_3548 SM00062 Bacterial periplasmic substrate-binding proteins DJ48_3548 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. DJ48_3549 SM00382 ATPases associated with a variety of cellular activities DJ48_355 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain DJ48_3556 SM00642 Alpha-amylase domain DJ48_3558 SM00345 helix_turn_helix gluconate operon transcriptional repressor DJ48_3558 SM00866 DJ48_3558 DJ48_356 SM00851 MGS-like domain DJ48_356 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DJ48_356 SM01209 DJ48_356 DJ48_3560 SM00052 Putative diguanylate phosphodiesterase DJ48_3560 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) DJ48_3560 SM00091 PAS domain DJ48_3560 SM00267 diguanylate cyclase DJ48_3563 SM00155 Phospholipase D. Active site motifs. DJ48_3564 SM00382 ATPases associated with a variety of cellular activities DJ48_3565 SM00327 von Willebrand factor (vWF) type A domain DJ48_3570 SM00382 ATPases associated with a variety of cellular activities DJ48_3576 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DJ48_3580 SM01091 Transporter associated domain DJ48_3589 SM00028 Tetratricopeptide repeats DJ48_3589 SM00530 Helix-turn-helix XRE-family like proteins DJ48_359 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family DJ48_3593 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DJ48_3595 SM01002 Alanine dehydrogenase/PNT, C-terminal domain DJ48_3595 SM01003 Alanine dehydrogenase/PNT, N-terminal domain DJ48_3598 SM00926 Molybdopterin oxidoreductase Fe4S4 domain DJ48_3598 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DJ48_3602 SM00448 cheY-homologous receiver domain DJ48_3602 SM00862 Transcriptional regulatory protein, C terminal DJ48_3603 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ48_3603 SM00387 Histidine kinase-like ATPases DJ48_3603 SM00388 His Kinase A (phosphoacceptor) domain DJ48_3605 SM00345 helix_turn_helix gluconate operon transcriptional repressor DJ48_3608 SM00919 Malic enzyme, NAD binding domain DJ48_3608 SM01274 DJ48_3608 DJ48_3610 SM00448 cheY-homologous receiver domain DJ48_3611 SM00387 Histidine kinase-like ATPases DJ48_3612 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DJ48_3612 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ48_3615 SM00387 Histidine kinase-like ATPases DJ48_3615 SM00388 His Kinase A (phosphoacceptor) domain DJ48_3616 SM00448 cheY-homologous receiver domain DJ48_3616 SM00862 Transcriptional regulatory protein, C terminal DJ48_3621 SM00382 ATPases associated with a variety of cellular activities DJ48_3623 SM00248 ankyrin repeats DJ48_3627 SM00448 cheY-homologous receiver domain DJ48_3628 SM00091 PAS domain DJ48_3628 SM00387 Histidine kinase-like ATPases DJ48_3629 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DJ48_3629 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ48_3631 SM00244 prohibitin homologues DJ48_3633 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins DJ48_3636 SM00364 Leucine-rich repeats, bacterial type DJ48_3636 SM00365 Leucine-rich repeat, SDS22-like subfamily DJ48_3636 SM00369 Leucine-rich repeats, typical (most populated) subfamily DJ48_3636 SM00725 NEAr Transporter domain DJ48_3638 SM00763 PrkA AAA domain DJ48_3640 SM00052 Putative diguanylate phosphodiesterase DJ48_3640 SM00091 PAS domain DJ48_3640 SM00267 diguanylate cyclase DJ48_3643 SM00567 E-Z type HEAT repeats DJ48_3676 SM00382 ATPases associated with a variety of cellular activities DJ48_368 SM00831 Cation transporter/ATPase, N-terminus DJ48_3680 SM00382 ATPases associated with a variety of cellular activities DJ48_3685 SM00478 endonuclease III DJ48_3685 SM00525 DJ48_3685 DJ48_3701 SM00984 UDP binding domain DJ48_371 SM00072 Guanylate kinase homologues. DJ48_3712 SM00530 Helix-turn-helix XRE-family like proteins DJ48_3716 SM00382 ATPases associated with a variety of cellular activities DJ48_372 SM01409 DJ48_372 DJ48_374 SM00487 DEAD-like helicases superfamily DJ48_374 SM00490 helicase superfamily c-terminal domain DJ48_3765 SM00382 ATPases associated with a variety of cellular activities DJ48_3772 SM00530 Helix-turn-helix XRE-family like proteins DJ48_3778 SM00478 endonuclease III DJ48_379 SM00331 Sigma factor PP2C-like phosphatases DJ48_379 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain DJ48_3797 SM00226 Low molecular weight phosphatase family DJ48_3799 SM00831 Cation transporter/ATPase, N-terminus DJ48_38 SM00849 Metallo-beta-lactamase superfamily DJ48_380 SM00220 Serine/Threonine protein kinases, catalytic domain DJ48_380 SM00740 DJ48_380 DJ48_3808 SM00946 Prolyl-tRNA synthetase, C-terminal DJ48_3814 SM00530 Helix-turn-helix XRE-family like proteins DJ48_3820 SM00060 Fibronectin type 3 domain DJ48_3820 SM00636 DJ48_3820 DJ48_3820 SM00637 DJ48_3820 DJ48_3821 SM00382 ATPases associated with a variety of cellular activities DJ48_3827 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DJ48_3827 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ48_383 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain DJ48_3831 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain DJ48_3831 SM00437 Bacterial DNA topoisomerase I DNA-binding domain DJ48_3831 SM00493 DJ48_3831 DJ48_3835 SM00642 Alpha-amylase domain DJ48_3836 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DJ48_3836 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ48_3837 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DJ48_3837 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ48_3838 SM00382 ATPases associated with a variety of cellular activities DJ48_3839 SM00062 Bacterial periplasmic substrate-binding proteins DJ48_3839 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. DJ48_386 SM01120 DJ48_386 DJ48_386 SM01121 DJ48_386 DJ48_3860 SM01007 Class II Aldolase and Adducin N-terminal domain DJ48_3869 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain DJ48_387 SM00487 DEAD-like helicases superfamily DJ48_387 SM00490 helicase superfamily c-terminal domain DJ48_3882 SM00382 ATPases associated with a variety of cellular activities DJ48_3885 SM00046 Diacylglycerol kinase catalytic domain (presumed) DJ48_3886 SM00845 GatB domain DJ48_3890 SM00347 helix_turn_helix multiple antibiotic resistance protein DJ48_3896 SM00382 ATPases associated with a variety of cellular activities DJ48_3896 SM00930 DJ48_3896 DJ48_390 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. DJ48_3902 SM00278 Helix-hairpin-helix DNA-binding motif class 1 DJ48_3902 SM00292 breast cancer carboxy-terminal domain DJ48_3902 SM00532 Ligase N family DJ48_3906 SM00244 prohibitin homologues DJ48_3908 SM01209 DJ48_3908 DJ48_3908 SM01210 DJ48_3908 DJ48_3909 SM00798 AICARFT/IMPCHase bienzyme DJ48_3909 SM00851 MGS-like domain DJ48_391 SM00822 DJ48_391 DJ48_3914 SM01211 DJ48_3914 DJ48_3917 SM00998 Adenylosuccinate lyase C-terminus DJ48_3919 SM01001 AIR carboxylase DJ48_3924 SM00448 cheY-homologous receiver domain DJ48_3924 SM00862 Transcriptional regulatory protein, C terminal DJ48_3925 SM00387 Histidine kinase-like ATPases DJ48_3925 SM00388 His Kinase A (phosphoacceptor) domain DJ48_3926 SM00382 ATPases associated with a variety of cellular activities DJ48_393 SM00358 Double-stranded RNA binding motif DJ48_393 SM00535 Ribonuclease III family DJ48_394 SM00968 SMC proteins Flexible Hinge Domain DJ48_3945 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ48_3945 SM00387 Histidine kinase-like ATPases DJ48_3945 SM00388 His Kinase A (phosphoacceptor) domain DJ48_3946 SM00448 cheY-homologous receiver domain DJ48_3946 SM00862 Transcriptional regulatory protein, C terminal DJ48_395 SM00382 ATPases associated with a variety of cellular activities DJ48_395 SM00962 SRP54-type protein, GTPase domain DJ48_395 SM00963 SRP54-type protein, helical bundle domain DJ48_3950 SM00883 Chaperonin 10 Kd subunit DJ48_3953 SM00881 CoA binding domain DJ48_3954 SM00382 ATPases associated with a variety of cellular activities DJ48_397 SM00382 ATPases associated with a variety of cellular activities DJ48_397 SM00962 SRP54-type protein, GTPase domain DJ48_397 SM00963 SRP54-type protein, helical bundle domain DJ48_3976 SM00731 SprT homologues. DJ48_3977 SM00316 Ribosomal protein S1-like RNA-binding domain DJ48_3977 SM00732 Likely ribonuclease with RNase H fold. DJ48_3980 SM01005 Alanine racemase, C-terminal domain DJ48_3985 SM00487 DEAD-like helicases superfamily DJ48_3985 SM00490 helicase superfamily c-terminal domain DJ48_3998 SM00382 ATPases associated with a variety of cellular activities DJ48_3999 SM00382 ATPases associated with a variety of cellular activities DJ48_4005 SM00382 ATPases associated with a variety of cellular activities DJ48_4015 SM00354 helix_turn _helix lactose operon repressor DJ48_4017 SM00563 Phosphate acyltransferases DJ48_4035 SM00342 helix_turn_helix, arabinose operon control protein DJ48_4038 SM00382 ATPases associated with a variety of cellular activities DJ48_4039 SM00382 ATPases associated with a variety of cellular activities DJ48_4049 SM00829 Enoylreductase DJ48_4051 SM00382 ATPases associated with a variety of cellular activities DJ48_4051 SM00930 DJ48_4051 DJ48_4060 SM01350 DJ48_4060 DJ48_4063 SM00345 helix_turn_helix gluconate operon transcriptional repressor DJ48_4063 SM00895 DJ48_4063 DJ48_407 SM00881 CoA binding domain DJ48_4087 SM01251 DJ48_4087 DJ48_409 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain DJ48_409 SM00437 Bacterial DNA topoisomerase I DNA-binding domain DJ48_409 SM00493 DJ48_409 DJ48_4090 SM00646 DJ48_4090 DJ48_4096 SM00382 ATPases associated with a variety of cellular activities DJ48_4097 SM00382 ATPases associated with a variety of cellular activities DJ48_4099 SM00662 RNA polymerases D DJ48_41 SM00859 Semialdehyde dehydrogenase, NAD binding domain DJ48_4103 SM00316 Ribosomal protein S1-like RNA-binding domain DJ48_4115 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. DJ48_4116 SM01374 DJ48_4116 DJ48_4120 SM00322 K homology RNA-binding domain DJ48_4123 SM01382 DJ48_4123 DJ48_4123 SM01383 DJ48_4123 DJ48_4127 SM01403 DJ48_4127 DJ48_4129 SM00838 Elongation factor G C-terminus DJ48_4129 SM00889 Elongation factor G, domain IV DJ48_413 SM00382 ATPases associated with a variety of cellular activities DJ48_413 SM01086 C-terminal, D2-small domain, of ClpB protein DJ48_4133 SM00663 RNA polymerase I subunit A N-terminus DJ48_4139 SM00649 Ribosomal protein L11/L12 DJ48_4140 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. DJ48_4142 SM00421 helix_turn_helix, Lux Regulon DJ48_4144 SM00967 RNA 2'-O ribose methyltransferase substrate binding DJ48_4145 SM00535 Ribonuclease III family DJ48_4146 SM00840 DJ48_4146 DJ48_4151 SM00670 Large family of predicted nucleotide-binding domains DJ48_4153 SM00382 ATPases associated with a variety of cellular activities DJ48_4154 SM00382 ATPases associated with a variety of cellular activities DJ48_4154 SM01086 C-terminal, D2-small domain, of ClpB protein DJ48_4164 SM00530 Helix-turn-helix XRE-family like proteins DJ48_4166 SM00905 Dihydroneopterin aldolase DJ48_4174 SM00382 ATPases associated with a variety of cellular activities DJ48_4176 SM00977 TilS substrate C-terminal domain DJ48_4177 SM00331 Sigma factor PP2C-like phosphatases DJ48_4177 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain DJ48_4180 SM00316 Ribosomal protein S1-like RNA-binding domain DJ48_4184 SM00363 S4 RNA-binding domain DJ48_4187 SM00966 SpoVT / AbrB like domain DJ48_4188 SM00487 DEAD-like helicases superfamily DJ48_4188 SM00490 helicase superfamily c-terminal domain DJ48_4188 SM00982 DJ48_4188 DJ48_4188 SM01058 CarD-like/TRCF domain DJ48_4191 SM01400 DJ48_4191 DJ48_4200 SM00650 Ribosomal RNA adenine dimethylases DJ48_4201 SM00493 DJ48_4201 DJ48_4204 SM00966 SpoVT / AbrB like domain DJ48_422 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. DJ48_4221 SM00493 DJ48_4221 DJ48_4223 SM00382 ATPases associated with a variety of cellular activities DJ48_4233 SM00936 Penicillin-binding protein 5, C-terminal domain DJ48_4234 SM00116 Domain in cystathionine beta-synthase and other proteins. DJ48_4234 SM01240 DJ48_4234 DJ48_424 SM00479 DJ48_424 DJ48_424 SM00481 DNA polymerase alpha chain like domain DJ48_4242 SM00434 DNA Topoisomerase IV DJ48_4243 SM00387 Histidine kinase-like ATPases DJ48_4243 SM00433 TopoisomeraseII DJ48_4246 SM00480 DNA polymerase III beta subunit DJ48_4247 SM00382 ATPases associated with a variety of cellular activities DJ48_4247 SM00760 Bacterial dnaA protein helix-turn-helix domain DJ48_4251 SM00393 Putative single-stranded nucleic acids-binding domain DJ48_4251 SM01245 DJ48_4251 DJ48_4253 SM01228 DJ48_4253 DJ48_4255 SM00470 ParB-like nuclease domain DJ48_4257 SM00470 ParB-like nuclease domain DJ48_426 SM00316 Ribosomal protein S1-like RNA-binding domain DJ48_426 SM00322 K homology RNA-binding domain DJ48_4266 SM00267 diguanylate cyclase DJ48_4269 SM00788 Adenylosuccinate synthetase DJ48_4274 SM00448 cheY-homologous receiver domain DJ48_4274 SM00862 Transcriptional regulatory protein, C terminal DJ48_4275 SM00091 PAS domain DJ48_4275 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ48_4275 SM00387 Histidine kinase-like ATPases DJ48_4275 SM00388 His Kinase A (phosphoacceptor) domain DJ48_4278 SM00849 Metallo-beta-lactamase superfamily DJ48_4279 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. DJ48_4284 SM01240 DJ48_4284 DJ48_4286 SM00487 DEAD-like helicases superfamily DJ48_4286 SM00490 helicase superfamily c-terminal domain DJ48_4297 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. DJ48_4297 SM00387 Histidine kinase-like ATPases DJ48_4298 SM00448 cheY-homologous receiver domain DJ48_4298 SM00850 LytTr DNA-binding domain DJ48_4310 SM00382 ATPases associated with a variety of cellular activities DJ48_4315 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DJ48_4321 SM00448 cheY-homologous receiver domain DJ48_4321 SM00850 LytTr DNA-binding domain DJ48_4324 SM00267 diguanylate cyclase DJ48_4326 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. DJ48_4328 SM00421 helix_turn_helix, Lux Regulon DJ48_4328 SM00448 cheY-homologous receiver domain DJ48_433 SM00904 Riboflavin kinase DJ48_4330 SM00100 Cyclic nucleotide-monophosphate binding domain DJ48_4337 SM00354 helix_turn _helix lactose operon repressor DJ48_4339 SM00382 ATPases associated with a variety of cellular activities DJ48_434 SM01387 DJ48_434 DJ48_4341 SM00986 Uracil DNA glycosylase superfamily DJ48_4341 SM00987 UreE urease accessory protein, C-terminal domain DJ48_435 SM00316 Ribosomal protein S1-like RNA-binding domain DJ48_435 SM00322 K homology RNA-binding domain DJ48_4350 SM00936 Penicillin-binding protein 5, C-terminal domain DJ48_4359 SM00382 ATPases associated with a variety of cellular activities DJ48_4361 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DJ48_4367 SM00422 helix_turn_helix, mercury resistance DJ48_4375 SM00836 DALR anticodon binding domain DJ48_4375 SM01016 Arginyl tRNA synthetase N terminal dom DJ48_4384 SM00382 ATPases associated with a variety of cellular activities DJ48_4386 SM00387 Histidine kinase-like ATPases DJ48_4387 SM00421 helix_turn_helix, Lux Regulon DJ48_4387 SM00448 cheY-homologous receiver domain DJ48_4388 SM00530 Helix-turn-helix XRE-family like proteins DJ48_4391 SM00052 Putative diguanylate phosphodiesterase DJ48_4391 SM00267 diguanylate cyclase DJ48_4393 SM00155 Phospholipase D. Active site motifs. DJ48_4403 SM00448 cheY-homologous receiver domain DJ48_4408 SM00357 Cold shock protein domain DJ48_4408 SM00382 ATPases associated with a variety of cellular activities DJ48_4408 SM00959 Rho termination factor, N-terminal domain DJ48_441 SM00859 Semialdehyde dehydrogenase, NAD binding domain DJ48_4411 SM00937 DJ48_4411 DJ48_4418 SM00903 Flavin reductase like domain DJ48_4421 SM00226 Low molecular weight phosphatase family DJ48_443 SM01130 DJ48_443 DJ48_4434 SM00382 ATPases associated with a variety of cellular activities DJ48_4438 SM00052 Putative diguanylate phosphodiesterase DJ48_4438 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) DJ48_4438 SM00091 PAS domain DJ48_4438 SM00267 diguanylate cyclase DJ48_444 SM00849 Metallo-beta-lactamase superfamily DJ48_4454 SM00850 LytTr DNA-binding domain DJ48_4455 SM00382 ATPases associated with a variety of cellular activities DJ48_4467 SM00984 UDP binding domain DJ48_4469 SM00287 Bacterial SH3 domain homologues DJ48_4469 SM00382 ATPases associated with a variety of cellular activities DJ48_447 SM00382 ATPases associated with a variety of cellular activities DJ48_447 SM00843 DJ48_447 DJ48_4475 SM00448 cheY-homologous receiver domain DJ48_4475 SM00862 Transcriptional regulatory protein, C terminal DJ48_4476 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ48_4476 SM00387 Histidine kinase-like ATPases DJ48_4476 SM00388 His Kinase A (phosphoacceptor) domain DJ48_448 SM00345 helix_turn_helix gluconate operon transcriptional repressor DJ48_448 SM00866 DJ48_448 DJ48_4481 SM00530 Helix-turn-helix XRE-family like proteins DJ48_4483 SM00382 ATPases associated with a variety of cellular activities DJ48_4492 SM00487 DEAD-like helicases superfamily DJ48_4492 SM00490 helicase superfamily c-terminal domain DJ48_4498 SM00287 Bacterial SH3 domain homologues DJ48_450 SM00382 ATPases associated with a variety of cellular activities DJ48_4504 SM00287 Bacterial SH3 domain homologues DJ48_4505 SM00287 Bacterial SH3 domain homologues DJ48_4537 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. DJ48_4538 SM00382 ATPases associated with a variety of cellular activities DJ48_4549 SM00487 DEAD-like helicases superfamily DJ48_4549 SM00490 helicase superfamily c-terminal domain DJ48_4551 SM00357 Cold shock protein domain DJ48_4553 SM00957 SecA DEAD-like domain DJ48_4553 SM00958 SecA preprotein cross-linking domain DJ48_4554 SM00937 DJ48_4554 DJ48_4556 SM00382 ATPases associated with a variety of cellular activities DJ48_4558 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. DJ48_4558 SM00245 tail specific protease DJ48_4560 SM00382 ATPases associated with a variety of cellular activities DJ48_4562 SM00382 ATPases associated with a variety of cellular activities DJ48_4564 SM00422 helix_turn_helix, mercury resistance DJ48_4567 SM00530 Helix-turn-helix XRE-family like proteins DJ48_4571 SM00422 helix_turn_helix, mercury resistance DJ48_4575 SM00487 DEAD-like helicases superfamily DJ48_4575 SM00490 helicase superfamily c-terminal domain DJ48_4584 SM00028 Tetratricopeptide repeats DJ48_4604 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DJ48_4608 SM01192 DJ48_4608 DJ48_4608 SM01193 DJ48_4608 DJ48_461 SM00852 Probable molybdopterin binding domain DJ48_462 SM00382 ATPases associated with a variety of cellular activities DJ48_4635 SM00316 Ribosomal protein S1-like RNA-binding domain DJ48_4635 SM00357 Cold shock protein domain DJ48_4635 SM00955 DJ48_4635 DJ48_4637 SM00448 cheY-homologous receiver domain DJ48_4637 SM00862 Transcriptional regulatory protein, C terminal DJ48_464 SM00322 K homology RNA-binding domain DJ48_464 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DJ48_4641 SM00382 ATPases associated with a variety of cellular activities DJ48_4651 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DJ48_4652 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain DJ48_4654 SM00363 S4 RNA-binding domain DJ48_4661 SM01276 DJ48_4661 DJ48_4680 SM00347 helix_turn_helix multiple antibiotic resistance protein DJ48_4684 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DJ48_4684 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ48_4688 SM00387 Histidine kinase-like ATPases DJ48_4688 SM00388 His Kinase A (phosphoacceptor) domain DJ48_4689 SM00448 cheY-homologous receiver domain DJ48_4689 SM00862 Transcriptional regulatory protein, C terminal DJ48_4694 SM00530 Helix-turn-helix XRE-family like proteins DJ48_470 SM00729 Elongator protein 3, MiaB family, Radical SAM DJ48_4708 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DJ48_4708 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ48_4717 SM00849 Metallo-beta-lactamase superfamily DJ48_473 SM00533 DNA-binding domain of DNA mismatch repair MUTS family DJ48_473 SM00534 ATPase domain of DNA mismatch repair MUTS family DJ48_4734 SM00493 DJ48_4734 DJ48_4737 SM00382 ATPases associated with a variety of cellular activities DJ48_4737 SM00930 DJ48_4737 DJ48_474 SM00853 MutL C terminal dimerisation domain DJ48_474 SM01340 DJ48_474 DJ48_4741 SM00382 ATPases associated with a variety of cellular activities DJ48_475 SM00382 ATPases associated with a variety of cellular activities DJ48_4752 SM00729 Elongator protein 3, MiaB family, Radical SAM DJ48_4754 SM00855 Phosphoglycerate mutase family DJ48_4757 SM00422 helix_turn_helix, mercury resistance DJ48_4764 SM00420 helix_turn_helix, Deoxyribose operon repressor DJ48_4777 SM00860 SMI1 / KNR4 family DJ48_478 SM00448 cheY-homologous receiver domain DJ48_478 SM00862 Transcriptional regulatory protein, C terminal DJ48_4782 SM00382 ATPases associated with a variety of cellular activities DJ48_479 SM00387 Histidine kinase-like ATPases DJ48_479 SM00388 His Kinase A (phosphoacceptor) domain DJ48_4793 SM00871 Bacterial transcription activator, effector binding domain DJ48_48 SM00347 helix_turn_helix multiple antibiotic resistance protein DJ48_4812 SM00479 DJ48_4812 DJ48_4813 SM01298 DJ48_4813 DJ48_4820 SM00344 helix_turn_helix ASNC type DJ48_4822 SM00316 Ribosomal protein S1-like RNA-binding domain DJ48_485 SM00257 Lysin motif DJ48_4855 SM00642 Alpha-amylase domain DJ48_4863 SM00357 Cold shock protein domain DJ48_487 SM00148 Phospholipase C, catalytic domain (part); domain X DJ48_4871 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain DJ48_4872 SM00448 cheY-homologous receiver domain DJ48_4872 SM00862 Transcriptional regulatory protein, C terminal DJ48_4874 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ48_4874 SM00387 Histidine kinase-like ATPases DJ48_4874 SM00388 His Kinase A (phosphoacceptor) domain DJ48_4882 SM00345 helix_turn_helix gluconate operon transcriptional repressor DJ48_4882 SM00866 DJ48_4882 DJ48_4886 SM00382 ATPases associated with a variety of cellular activities DJ48_4889 SM00387 Histidine kinase-like ATPases DJ48_4890 SM00448 cheY-homologous receiver domain DJ48_4890 SM00862 Transcriptional regulatory protein, C terminal DJ48_4891 SM00342 helix_turn_helix, arabinose operon control protein DJ48_4891 SM00871 Bacterial transcription activator, effector binding domain DJ48_4892 SM00382 ATPases associated with a variety of cellular activities DJ48_4902 SM00046 Diacylglycerol kinase catalytic domain (presumed) DJ48_4908 SM00448 cheY-homologous receiver domain DJ48_4908 SM00862 Transcriptional regulatory protein, C terminal DJ48_4909 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ48_4909 SM00387 Histidine kinase-like ATPases DJ48_4909 SM00388 His Kinase A (phosphoacceptor) domain DJ48_4911 SM00899 DJ48_4911 DJ48_492 SM00345 helix_turn_helix gluconate operon transcriptional repressor DJ48_4923 SM00894 Excalibur calcium-binding domain DJ48_4927 SM01234 DJ48_4927 DJ48_4928 SM00947 Carbonic anhydrase DJ48_4940 SM00382 ATPases associated with a variety of cellular activities DJ48_4946 SM00387 Histidine kinase-like ATPases DJ48_4946 SM00388 His Kinase A (phosphoacceptor) domain DJ48_4947 SM00387 Histidine kinase-like ATPases DJ48_4958 SM00852 Probable molybdopterin binding domain DJ48_4961 SM00014 Acid phosphatase homologues DJ48_4969 SM00382 ATPases associated with a variety of cellular activities DJ48_497 SM00052 Putative diguanylate phosphodiesterase DJ48_497 SM00091 PAS domain DJ48_497 SM00267 diguanylate cyclase DJ48_4971 SM00729 Elongator protein 3, MiaB family, Radical SAM DJ48_4975 SM00382 ATPases associated with a variety of cellular activities DJ48_4990 SM00450 Rhodanese Homology Domain DJ48_4994 SM00729 Elongator protein 3, MiaB family, Radical SAM DJ48_4997 SM00852 Probable molybdopterin binding domain DJ48_5 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. DJ48_5004 SM01058 CarD-like/TRCF domain DJ48_5009 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DJ48_5015 SM00363 S4 RNA-binding domain DJ48_5016 SM00420 helix_turn_helix, Deoxyribose operon repressor DJ48_5019 SM00642 Alpha-amylase domain DJ48_5023 SM00849 Metallo-beta-lactamase superfamily DJ48_5031 SM00843 DJ48_5031 DJ48_504 SM00478 endonuclease III DJ48_5042 SM00354 helix_turn _helix lactose operon repressor DJ48_5050 SM00248 ankyrin repeats DJ48_5051 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ48_5051 SM00387 Histidine kinase-like ATPases DJ48_5051 SM00388 His Kinase A (phosphoacceptor) domain DJ48_5052 SM00448 cheY-homologous receiver domain DJ48_5052 SM00862 Transcriptional regulatory protein, C terminal DJ48_5055 SM00116 Domain in cystathionine beta-synthase and other proteins. DJ48_506 SM00342 helix_turn_helix, arabinose operon control protein DJ48_5061 SM00363 S4 RNA-binding domain DJ48_5064 SM00363 S4 RNA-binding domain DJ48_5064 SM01390 DJ48_5064 DJ48_5072 SM00981 DJ48_5072 DJ48_5097 SM01002 Alanine dehydrogenase/PNT, C-terminal domain DJ48_5097 SM01003 Alanine dehydrogenase/PNT, N-terminal domain DJ48_5099 SM00530 Helix-turn-helix XRE-family like proteins DJ48_5110 SM00849 Metallo-beta-lactamase superfamily DJ48_5112 SM00116 Domain in cystathionine beta-synthase and other proteins. DJ48_5119 SM00481 DNA polymerase alpha chain like domain DJ48_512 SM00382 ATPases associated with a variety of cellular activities DJ48_5120 SM00919 Malic enzyme, NAD binding domain DJ48_5120 SM01274 DJ48_5120 DJ48_5121 SM00345 helix_turn_helix gluconate operon transcriptional repressor DJ48_5130 SM01329 DJ48_5130 DJ48_5134 SM00448 cheY-homologous receiver domain DJ48_5134 SM00862 Transcriptional regulatory protein, C terminal DJ48_5135 SM00091 PAS domain DJ48_5135 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ48_5135 SM00387 Histidine kinase-like ATPases DJ48_5135 SM00388 His Kinase A (phosphoacceptor) domain DJ48_5136 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs DJ48_5136 SM00474 3'-5' exonuclease DJ48_5136 SM00475 5'-3' exonuclease DJ48_5136 SM00482 DNA polymerase A domain DJ48_5137 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain DJ48_5137 SM01232 DJ48_5137 DJ48_5140 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DJ48_5144 SM00382 ATPases associated with a variety of cellular activities DJ48_5146 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain DJ48_5161 SM00967 RNA 2'-O ribose methyltransferase substrate binding DJ48_5163 SM00873 B3/4 domain DJ48_5163 SM00874 tRNA synthetase B5 domain DJ48_5163 SM00896 Ferredoxin-fold anticodon binding domain DJ48_5171 SM00278 Helix-hairpin-helix DNA-binding motif class 1 DJ48_5171 SM00481 DNA polymerase alpha chain like domain DJ48_5171 SM00483 DNA polymerase X family DJ48_5172 SM00463 Small MutS-related domain DJ48_5172 SM00533 DNA-binding domain of DNA mismatch repair MUTS family DJ48_5172 SM00534 ATPase domain of DNA mismatch repair MUTS family DJ48_5174 SM00363 S4 RNA-binding domain DJ48_5176 SM00725 NEAr Transporter domain DJ48_5177 SM00725 NEAr Transporter domain DJ48_5178 SM00725 NEAr Transporter domain DJ48_518 SM00411 bacterial (prokaryotic) histone like domain DJ48_5182 SM00382 ATPases associated with a variety of cellular activities DJ48_5186 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase DJ48_5189 SM00448 cheY-homologous receiver domain DJ48_5189 SM00862 Transcriptional regulatory protein, C terminal DJ48_5190 SM00387 Histidine kinase-like ATPases DJ48_5190 SM00388 His Kinase A (phosphoacceptor) domain DJ48_5191 SM00382 ATPases associated with a variety of cellular activities DJ48_5204 SM00893 Electron transfer flavoprotein domain DJ48_5205 SM00893 Electron transfer flavoprotein domain DJ48_5207 SM00465 GIY-YIG type nucleases (URI domain) DJ48_5218 SM00382 ATPases associated with a variety of cellular activities DJ48_522 SM00636 DJ48_522 DJ48_5223 SM00530 Helix-turn-helix XRE-family like proteins DJ48_5226 SM00342 helix_turn_helix, arabinose operon control protein DJ48_5226 SM00448 cheY-homologous receiver domain DJ48_5228 SM00382 ATPases associated with a variety of cellular activities DJ48_5229 SM00382 ATPases associated with a variety of cellular activities DJ48_5237 SM00421 helix_turn_helix, Lux Regulon DJ48_5244 SM00909 Sporulation and spore germination DJ48_5256 SM00382 ATPases associated with a variety of cellular activities DJ48_5256 SM00994 ClpX C4-type zinc finger DJ48_5256 SM01086 C-terminal, D2-small domain, of ClpB protein DJ48_5257 SM00382 ATPases associated with a variety of cellular activities DJ48_5258 SM00382 ATPases associated with a variety of cellular activities DJ48_5258 SM00464 Found in ATP-dependent protease La (LON) DJ48_5261 SM00347 helix_turn_helix multiple antibiotic resistance protein DJ48_5266 SM01004 Delta-aminolevulinic acid dehydratase DJ48_5268 SM00257 Lysin motif DJ48_5286 SM01317 DJ48_5286 DJ48_5288 SM00448 cheY-homologous receiver domain DJ48_5288 SM00862 Transcriptional regulatory protein, C terminal DJ48_529 SM00420 helix_turn_helix, Deoxyribose operon repressor DJ48_529 SM01134 DJ48_529 DJ48_5290 SM00387 Histidine kinase-like ATPases DJ48_5291 SM00382 ATPases associated with a variety of cellular activities DJ48_5301 SM00257 Lysin motif DJ48_5304 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DJ48_5309 SM00278 Helix-hairpin-helix DNA-binding motif class 1 DJ48_5310 SM00382 ATPases associated with a variety of cellular activities DJ48_5314 SM01323 DJ48_5314 DJ48_532 SM00287 Bacterial SH3 domain homologues DJ48_5323 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DJ48_5323 SM00954 Region found in RelA / SpoT proteins DJ48_5330 SM00382 ATPases associated with a variety of cellular activities DJ48_5334 SM00028 Tetratricopeptide repeats DJ48_5341 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain DJ48_5343 SM00732 Likely ribonuclease with RNase H fold. DJ48_5362 SM00382 ATPases associated with a variety of cellular activities DJ48_5367 SM00530 Helix-turn-helix XRE-family like proteins DJ48_5377 SM00855 Phosphoglycerate mutase family DJ48_538 SM00382 ATPases associated with a variety of cellular activities DJ48_5382 SM00098 Alkaline phosphatase homologues DJ48_5385 SM00954 Region found in RelA / SpoT proteins DJ48_5395 SM01103 DJ48_5395 DJ48_5397 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DJ48_5401 SM00278 Helix-hairpin-helix DNA-binding motif class 1 DJ48_5403 SM00849 Metallo-beta-lactamase superfamily DJ48_5409 SM00838 Elongation factor G C-terminus DJ48_5411 SM00729 Elongator protein 3, MiaB family, Radical SAM DJ48_5415 SM00271 DnaJ molecular chaperone homology domain DJ48_5418 SM00729 Elongator protein 3, MiaB family, Radical SAM DJ48_5424 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DJ48_543 SM00422 helix_turn_helix, mercury resistance DJ48_5431 SM00116 Domain in cystathionine beta-synthase and other proteins. DJ48_5433 SM00400 zinc finger DJ48_5433 SM00493 DJ48_5433 DJ48_5433 SM00766 DNA primase DnaG DnaB-binding DJ48_544 SM01230 DJ48_544 DJ48_5440 SM00487 DEAD-like helicases superfamily DJ48_5440 SM00490 helicase superfamily c-terminal domain DJ48_5441 SM00518 AP endonuclease family 2 DJ48_5444 SM00382 ATPases associated with a variety of cellular activities DJ48_5457 SM00382 ATPases associated with a variety of cellular activities DJ48_5466 SM00849 Metallo-beta-lactamase superfamily DJ48_5468 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DJ48_5473 SM01018 B12 binding domain DJ48_548 SM00530 Helix-turn-helix XRE-family like proteins DJ48_5484 SM00382 ATPases associated with a variety of cellular activities DJ48_549 SM00530 Helix-turn-helix XRE-family like proteins DJ48_5491 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. DJ48_5498 SM00487 DEAD-like helicases superfamily DJ48_5498 SM00490 helicase superfamily c-terminal domain DJ48_5504 SM00345 helix_turn_helix gluconate operon transcriptional repressor DJ48_5505 SM00382 ATPases associated with a variety of cellular activities DJ48_5515 SM00354 helix_turn _helix lactose operon repressor DJ48_5516 SM00450 Rhodanese Homology Domain DJ48_5520 SM00529 Helix-turn-helix diphteria tox regulatory element DJ48_5527 SM00841 Elongation factor P, C-terminal DJ48_5527 SM01185 DJ48_5527 DJ48_5531 SM00382 ATPases associated with a variety of cellular activities DJ48_5541 SM00878 Biotin carboxylase C-terminal domain DJ48_5564 SM00646 DJ48_5564 DJ48_5575 SM00014 Acid phosphatase homologues DJ48_5582 SM00854 Bacterial capsule synthesis protein PGA_cap DJ48_5586 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DJ48_559 SM00382 ATPases associated with a variety of cellular activities DJ48_5614 SM00437 Bacterial DNA topoisomerase I DNA-binding domain DJ48_5615 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain DJ48_5615 SM00493 DJ48_5615 DJ48_574 SM00530 Helix-turn-helix XRE-family like proteins DJ48_58 SM00729 Elongator protein 3, MiaB family, Radical SAM DJ48_58 SM00876 Biotin and Thiamin Synthesis associated domain DJ48_6 SM00448 cheY-homologous receiver domain DJ48_603 SM00287 Bacterial SH3 domain homologues DJ48_603 SM00644 DJ48_603 DJ48_609 SM00028 Tetratricopeptide repeats DJ48_615 SM00857 Resolvase, N terminal domain DJ48_619 SM00062 Bacterial periplasmic substrate-binding proteins DJ48_620 SM00382 ATPases associated with a variety of cellular activities DJ48_624 SM00861 Transketolase, pyrimidine binding domain DJ48_627 SM00382 ATPases associated with a variety of cellular activities DJ48_628 SM00382 ATPases associated with a variety of cellular activities DJ48_631 SM00644 DJ48_631 DJ48_64 SM00704 CDGSH-type zinc finger. Function unknown. DJ48_640 SM00382 ATPases associated with a variety of cellular activities DJ48_658 SM01058 CarD-like/TRCF domain DJ48_664 SM00091 PAS domain DJ48_664 SM00387 Histidine kinase-like ATPases DJ48_664 SM00388 His Kinase A (phosphoacceptor) domain DJ48_667 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain DJ48_668 SM00644 DJ48_668 DJ48_668 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. DJ48_68 SM00354 helix_turn _helix lactose operon repressor DJ48_681 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain DJ48_690 SM00382 ATPases associated with a variety of cellular activities DJ48_693 SM00479 DJ48_693 DJ48_697 SM00257 Lysin motif DJ48_697 SM00636 DJ48_697 DJ48_700 SM01207 DJ48_700 DJ48_703 SM00448 cheY-homologous receiver domain DJ48_703 SM00862 Transcriptional regulatory protein, C terminal DJ48_704 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. DJ48_705 SM00881 CoA binding domain DJ48_706 SM00387 Histidine kinase-like ATPases DJ48_706 SM00433 TopoisomeraseII DJ48_707 SM00434 DNA Topoisomerase IV DJ48_710 SM00382 ATPases associated with a variety of cellular activities DJ48_731 SM00926 Molybdopterin oxidoreductase Fe4S4 domain DJ48_731 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DJ48_735 SM00729 Elongator protein 3, MiaB family, Radical SAM DJ48_739 SM00852 Probable molybdopterin binding domain DJ48_763 SM01022 DJ48_763 DJ48_768 SM00357 Cold shock protein domain DJ48_769 SM00479 DJ48_769 DJ48_778 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins DJ48_792 SM00028 Tetratricopeptide repeats DJ48_794 SM00829 Enoylreductase DJ48_795 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DJ48_808 SM00642 Alpha-amylase domain DJ48_810 SM00533 DNA-binding domain of DNA mismatch repair MUTS family DJ48_810 SM00534 ATPase domain of DNA mismatch repair MUTS family DJ48_812 SM00855 Phosphoglycerate mutase family DJ48_813 SM00829 Enoylreductase DJ48_837 SM00829 Enoylreductase DJ48_838 SM00849 Metallo-beta-lactamase superfamily DJ48_851 SM00641 Glycosyl hydrolases family 25 DJ48_852 SM00849 Metallo-beta-lactamase superfamily DJ48_858 SM00382 ATPases associated with a variety of cellular activities DJ48_862 SM00871 Bacterial transcription activator, effector binding domain DJ48_87 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain DJ48_870 SM00636 DJ48_870 DJ48_871 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DJ48_872 SM00248 ankyrin repeats DJ48_886 SM00849 Metallo-beta-lactamase superfamily DJ48_893 SM00345 helix_turn_helix gluconate operon transcriptional repressor DJ48_893 SM00866 DJ48_893 DJ48_899 SM00914 DJ48_899 DJ48_908 SM01276 DJ48_908 DJ48_91 SM00347 helix_turn_helix multiple antibiotic resistance protein DJ48_911 SM00829 Enoylreductase DJ48_914 SM00829 Enoylreductase DJ48_918 SM00861 Transketolase, pyrimidine binding domain DJ48_919 SM01350 DJ48_919 DJ48_927 SM00422 helix_turn_helix, mercury resistance DJ48_928 SM01091 Transporter associated domain DJ48_933 SM00028 Tetratricopeptide repeats DJ48_94 SM00382 ATPases associated with a variety of cellular activities DJ48_944 SM00382 ATPases associated with a variety of cellular activities DJ48_946 SM01266 DJ48_946 DJ48_95 SM00345 helix_turn_helix gluconate operon transcriptional repressor DJ48_958 SM00530 Helix-turn-helix XRE-family like proteins DJ48_96 SM00936 Penicillin-binding protein 5, C-terminal domain DJ48_961 SM00382 ATPases associated with a variety of cellular activities DJ48_973 SM01207 DJ48_973 DJ48_974 SM00530 Helix-turn-helix XRE-family like proteins DJ48_98 SM00387 Histidine kinase-like ATPases DJ48_983 SM00382 ATPases associated with a variety of cellular activities DJ48_996 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor