locus-tag class description KD35_00020 PF01654 Cytochrome bd terminal oxidase subunit I KD35_00025 PF02322 Cytochrome bd terminal oxidase subunit II KD35_00030 PF02040 Arsenical pump membrane protein KD35_00035 PF01964 Radical SAM ThiC family KD35_00035 PF13667 ThiC-associated domain KD35_00040 PF02652 L-lactate permease KD35_00050 PF09988 Uncharacterized metal-binding protein (DUF2227) KD35_00060 PF00884 Sulfatase KD35_00065 PF01063 Amino-transferase class IV KD35_00075 PF07662 Na+ dependent nucleoside transporter C-terminus KD35_00075 PF01773 Na+ dependent nucleoside transporter N-terminus KD35_00095 PF02028 BCCT, betaine/carnitine/choline family transporter KD35_00100 PF06725 3D domain KD35_00100 PF01476 LysM domain KD35_00125 PF04434 SWIM zinc finger KD35_00130 PF00271 Helicase conserved C-terminal domain KD35_00130 PF00176 SNF2 family N-terminal domain KD35_00130 PF12419 SNF2 Helicase protein KD35_00160 PF04542 Sigma-70 region 2 KD35_00160 PF04545 Sigma-70, region 4 KD35_00165 PF04893 Yip1 domain KD35_00170 PF02687 FtsX-like permease family KD35_00170 PF12704 MacB-like periplasmic core domain KD35_00175 PF00005 ABC transporter KD35_00195 PF07690 Major Facilitator Superfamily KD35_00210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_00210 PF16736 Single Cache-like KD35_00210 PF00512 His Kinase A (phospho-acceptor) domain KD35_00210 PF00989 PAS fold KD35_00215 PF00486 Transcriptional regulatory protein, C terminal KD35_00215 PF00072 Response regulator receiver domain KD35_00220 PF16363 GDP-mannose 4,6 dehydratase KD35_00225 PF03816 Cell envelope-related transcriptional attenuator domain KD35_00235 PF07977 FabA-like domain KD35_00240 PF02350 UDP-N-acetylglucosamine 2-epimerase KD35_00245 PF00005 ABC transporter KD35_00245 PF08239 Bacterial SH3 domain KD35_00250 PF01061 ABC-2 type transporter KD35_00255 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KD35_00255 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KD35_00255 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KD35_00300 PF12116 Stage III sporulation protein D KD35_00315 PF01551 Peptidase family M23 KD35_00325 PF00005 ABC transporter KD35_00330 PF00072 Response regulator receiver domain KD35_00330 PF04397 LytTr DNA-binding domain KD35_00335 PF00005 ABC transporter KD35_00340 PF08486 Stage II sporulation protein KD35_00345 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KD35_00355 PF06612 Protein of unknown function (DUF1146) KD35_00360 PF00361 Proton-conducting membrane transporter KD35_00365 PF00361 Proton-conducting membrane transporter KD35_00370 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KD35_00370 PF00361 Proton-conducting membrane transporter KD35_00370 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus KD35_00375 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L KD35_00380 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 KD35_00390 PF00146 NADH dehydrogenase KD35_00395 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit KD35_00400 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit KD35_00405 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit KD35_00410 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 KD35_00415 PF00563 EAL domain KD35_00415 PF03707 Bacterial signalling protein N terminal repeat KD35_00415 PF00990 Diguanylate cyclase, GGDEF domain KD35_00430 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain KD35_00430 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain KD35_00435 PF02874 ATP synthase alpha/beta family, beta-barrel domain KD35_00435 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KD35_00440 PF00231 ATP synthase KD35_00445 PF02874 ATP synthase alpha/beta family, beta-barrel domain KD35_00445 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KD35_00445 PF00306 ATP synthase alpha/beta chain, C terminal domain KD35_00450 PF00213 ATP synthase delta (OSCP) subunit KD35_00455 PF00430 ATP synthase B/B' CF(0) KD35_00460 PF00137 ATP synthase subunit C KD35_00465 PF00119 ATP synthase A chain KD35_00470 PF03899 ATP synthase I chain KD35_00490 PF00464 Serine hydroxymethyltransferase KD35_00495 PF04260 Protein of unknown function (DUF436) KD35_00500 PF02502 Ribose/Galactose Isomerase KD35_00505 PF01451 Low molecular weight phosphotyrosine protein phosphatase KD35_00510 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 KD35_00515 PF07681 DoxX KD35_00520 PF01613 Flavin reductase like domain KD35_00530 PF02659 Putative manganese efflux pump KD35_00535 PF03481 Putative GTP-binding controlling metal-binding KD35_00535 PF01300 Telomere recombination KD35_00545 PF09551 Stage II sporulation protein R (spore_II_R) KD35_00550 PF13847 Methyltransferase domain KD35_00550 PF17827 PrmC N-terminal domain KD35_00555 PF03462 PCRF domain KD35_00555 PF00472 RF-1 domain KD35_00560 PF00265 Thymidine kinase KD35_00565 PF01197 Ribosomal protein L31 KD35_00570 PF07497 Rho termination factor, RNA-binding domain KD35_00570 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KD35_00570 PF07498 Rho termination factor, N-terminal domain KD35_00575 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded KD35_00580 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KD35_00585 PF01116 Fructose-bisphosphate aldolase class-II KD35_00590 PF00072 Response regulator receiver domain KD35_00595 PF10740 Domain of unknown function (DUF2529) KD35_00600 PF00117 Glutamine amidotransferase class-I KD35_00600 PF06418 CTP synthase N-terminus KD35_00605 PF05066 HB1, ASXL, restriction endonuclease HTH domain KD35_00615 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KD35_00615 PF02770 Acyl-CoA dehydrogenase, middle domain KD35_00615 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KD35_00620 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KD35_00620 PF02770 Acyl-CoA dehydrogenase, middle domain KD35_00620 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KD35_00625 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KD35_00625 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KD35_00630 PF00108 Thiolase, N-terminal domain KD35_00630 PF02803 Thiolase, C-terminal domain KD35_00635 PF13183 4Fe-4S dicluster domain KD35_00635 PF02754 Cysteine-rich domain KD35_00640 PF13091 PLD-like domain KD35_00645 PF03851 UV-endonuclease UvdE KD35_00650 PF03707 Bacterial signalling protein N terminal repeat KD35_00650 PF00563 EAL domain KD35_00650 PF00990 Diguanylate cyclase, GGDEF domain KD35_00665 PF00196 Bacterial regulatory proteins, luxR family KD35_00665 PF00072 Response regulator receiver domain KD35_00670 PF07730 Histidine kinase KD35_00670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_00680 PF00005 ABC transporter KD35_00685 PF00557 Metallopeptidase family M24 KD35_00700 PF01473 Putative cell wall binding repeat KD35_00700 PF02324 Glycosyl hydrolase family 70 KD35_00705 PF04389 Peptidase family M28 KD35_00705 PF02225 PA domain KD35_00725 PF08281 Sigma-70, region 4 KD35_00725 PF04542 Sigma-70 region 2 KD35_00730 PF05746 DALR anticodon binding domain KD35_00730 PF00750 tRNA synthetases class I (R) KD35_00730 PF03485 Arginyl tRNA synthetase N terminal domain KD35_00735 PF09148 Domain of unknown function (DUF1934) KD35_00740 PF17676 LD-carboxypeptidase C-terminal domain KD35_00740 PF02016 LD-carboxypeptidase N-terminal domain KD35_00760 PF00491 Arginase family KD35_00765 PF17284 Spermidine synthase tetramerisation domain KD35_00770 PF07690 Major Facilitator Superfamily KD35_00775 PF13411 MerR HTH family regulatory protein KD35_00780 PF03009 Glycerophosphoryl diester phosphodiesterase family KD35_00785 PF00912 Transglycosylase KD35_00785 PF00905 Penicillin binding protein transpeptidase domain KD35_00790 PF08741 YwhD family KD35_00795 PF02163 Peptidase family M50 KD35_00800 PF01361 Tautomerase enzyme KD35_00805 PF01966 HD domain KD35_00810 PF01497 Periplasmic binding protein KD35_00815 PF00005 ABC transporter KD35_00820 PF01032 FecCD transport family KD35_00825 PF01032 FecCD transport family KD35_00830 PF01032 FecCD transport family KD35_00835 PF07293 Protein of unknown function (DUF1450) KD35_00850 PF03099 Biotin/lipoate A/B protein ligase family KD35_00855 PF01515 Phosphate acetyl/butaryl transferase KD35_00865 PF00768 D-alanyl-D-alanine carboxypeptidase KD35_00865 PF07943 Penicillin-binding protein 5, C-terminal domain KD35_00870 PF07486 Cell Wall Hydrolase KD35_00875 PF09671 Spore coat protein (Spore_GerQ) KD35_00880 PF04241 Protein of unknown function (DUF423) KD35_00890 PF07885 Ion channel KD35_00890 PF02254 TrkA-N domain KD35_00895 PF00860 Permease family KD35_00905 PF12823 Domain of unknown function (DUF3817) KD35_00910 PF03167 Uracil DNA glycosylase superfamily KD35_00915 PF12679 ABC-2 family transporter protein KD35_00920 PF00005 ABC transporter KD35_00925 PF13472 GDSL-like Lipase/Acylhydrolase family KD35_00930 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family KD35_00930 PF00356 Bacterial regulatory proteins, lacI family KD35_00940 PF03447 Homoserine dehydrogenase, NAD binding domain KD35_00940 PF00742 Homoserine dehydrogenase KD35_00940 PF01842 ACT domain KD35_00945 PF04204 Homoserine O-succinyltransferase KD35_00950 PF01053 Cys/Met metabolism PLP-dependent enzyme KD35_00960 PF13419 Haloacid dehalogenase-like hydrolase KD35_00965 PF00027 Cyclic nucleotide-binding domain KD35_00970 PF02525 Flavodoxin-like fold KD35_00975 PF00072 Response regulator receiver domain KD35_00975 PF00196 Bacterial regulatory proteins, luxR family KD35_00985 PF08543 Phosphomethylpyrimidine kinase KD35_00990 PF07694 5TMR of 5TMR-LYT KD35_00990 PF00990 Diguanylate cyclase, GGDEF domain KD35_00995 PF04328 Selenoprotein, putative KD35_01000 PF02554 Carbon starvation protein CstA KD35_01000 PF13722 5TM C-terminal transporter carbon starvation CstA KD35_01005 PF00072 Response regulator receiver domain KD35_01005 PF04397 LytTr DNA-binding domain KD35_01010 PF07690 Major Facilitator Superfamily KD35_01015 PF03808 Glycosyl transferase WecB/TagA/CpsF family KD35_01030 PF03458 UPF0126 domain KD35_01035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KD35_01045 PF03061 Thioesterase superfamily KD35_01055 PF00535 Glycosyl transferase family 2 KD35_01060 PF00005 ABC transporter KD35_01060 PF12848 ABC transporter KD35_01085 PF00535 Glycosyl transferase family 2 KD35_01090 PF00440 Bacterial regulatory proteins, tetR family KD35_01095 PF00873 AcrB/AcrD/AcrF family KD35_01100 PF01641 SelR domain KD35_01100 PF01625 Peptide methionine sulfoxide reductase KD35_01105 PF01594 AI-2E family transporter KD35_01110 PF04172 LrgB-like family KD35_01115 PF03788 LrgA family KD35_01120 PF04397 LytTr DNA-binding domain KD35_01120 PF00072 Response regulator receiver domain KD35_01125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_01125 PF06580 Histidine kinase KD35_01125 PF13492 GAF domain KD35_01125 PF07694 5TMR of 5TMR-LYT KD35_01130 PF07690 Major Facilitator Superfamily KD35_01135 PF02028 BCCT, betaine/carnitine/choline family transporter KD35_01140 PF02898 Nitric oxide synthase, oxygenase domain KD35_01145 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KD35_01145 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KD35_01155 PF02293 AmiS/UreI family transporter KD35_01165 PF16363 GDP-mannose 4,6 dehydratase KD35_01170 PF03006 Haemolysin-III related KD35_01180 PF00271 Helicase conserved C-terminal domain KD35_01180 PF00270 DEAD/DEAH box helicase KD35_01180 PF03880 DbpA RNA binding domain KD35_01190 PF00478 IMP dehydrogenase / GMP reductase domain KD35_01195 PF08439 Oligopeptidase F KD35_01195 PF01432 Peptidase family M3 KD35_01205 PF02590 Predicted SPOUT methyltransferase KD35_01215 PF13180 PDZ domain KD35_01220 PF00753 Metallo-beta-lactamase superfamily KD35_01225 PF09648 YycH protein KD35_01230 PF07435 YycH protein KD35_01235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_01235 PF00512 His Kinase A (phospho-acceptor) domain KD35_01235 PF00672 HAMP domain KD35_01235 PF13426 PAS domain KD35_01240 PF00072 Response regulator receiver domain KD35_01240 PF00486 Transcriptional regulatory protein, C terminal KD35_01265 PF00709 Adenylosuccinate synthetase KD35_01270 PF00772 DnaB-like helicase N terminal domain KD35_01270 PF03796 DnaB-like helicase C terminal domain KD35_01275 PF03948 Ribosomal protein L9, C-terminal domain KD35_01275 PF01281 Ribosomal protein L9, N-terminal domain KD35_01280 PF01368 DHH family KD35_01280 PF02272 DHHA1 domain KD35_01285 PF09991 Predicted membrane protein (DUF2232) KD35_01290 PF01084 Ribosomal protein S18 KD35_01295 PF00436 Single-strand binding protein family KD35_01300 PF01250 Ribosomal protein S6 KD35_01305 PF01926 50S ribosome-binding GTPase KD35_01305 PF06071 Protein of unknown function (DUF933) KD35_01310 PF06107 Bacterial protein of unknown function (DUF951) KD35_01315 PF00924 Mechanosensitive ion channel KD35_01320 PF06866 Protein of unknown function (DUF1256) KD35_01325 PF17762 HTH domain found in ParB protein KD35_01325 PF02195 ParB-like nuclease domain KD35_01330 PF13614 AAA domain KD35_01335 PF17762 HTH domain found in ParB protein KD35_01335 PF02195 ParB-like nuclease domain KD35_01340 PF02527 rRNA small subunit methyltransferase G KD35_01345 PF01134 Glucose inhibited division protein A KD35_01345 PF13932 GidA associated domain KD35_01350 PF12631 MnmE helical domain KD35_01350 PF10396 GTP-binding protein TrmE N-terminus KD35_01350 PF01926 50S ribosome-binding GTPase KD35_01355 PF01424 R3H domain KD35_01355 PF14804 Jag N-terminus KD35_01360 PF02096 60Kd inner membrane protein KD35_01365 PF00825 Ribonuclease P KD35_01370 PF00468 Ribosomal protein L34 KD35_01375 PF00308 Bacterial dnaA protein KD35_01375 PF08299 Bacterial dnaA protein helix-turn-helix KD35_01375 PF11638 DnaA N-terminal domain KD35_01380 PF02768 DNA polymerase III beta subunit, C-terminal domain KD35_01380 PF00712 DNA polymerase III beta subunit, N-terminal domain KD35_01380 PF02767 DNA polymerase III beta subunit, central domain KD35_01390 PF02463 RecF/RecN/SMC N terminal domain KD35_01395 PF00986 DNA gyrase B subunit, carboxyl terminus KD35_01395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_01395 PF00204 DNA gyrase B KD35_01395 PF01751 Toprim domain KD35_01400 PF00521 DNA gyrase/topoisomerase IV, subunit A KD35_01400 PF03989 DNA gyrase C-terminal domain, beta-propeller KD35_01430 PF14175 YaaC-like Protein KD35_01435 PF00478 IMP dehydrogenase / GMP reductase domain KD35_01435 PF00571 CBS domain KD35_01440 PF07943 Penicillin-binding protein 5, C-terminal domain KD35_01440 PF00768 D-alanyl-D-alanine carboxypeptidase KD35_01445 PF01680 SOR/SNZ family KD35_01450 PF01174 SNO glutamine amidotransferase family KD35_01455 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KD35_01455 PF02403 Seryl-tRNA synthetase N-terminal domain KD35_01470 PF01712 Deoxynucleoside kinase KD35_01475 PF01712 Deoxynucleoside kinase KD35_01480 PF00857 Isochorismatase family KD35_01490 PF14437 MafB19-like deaminase KD35_01495 PF12169 DNA polymerase III subunits gamma and tau domain III KD35_01500 PF02575 YbaB/EbfC DNA-binding family KD35_01505 PF13662 Toprim domain KD35_01505 PF02132 RecR protein KD35_01510 PF10704 Protein of unknown function (DUF2508) KD35_01515 PF07441 SigmaK-factor processing regulatory protein BofA KD35_01550 PF01276 Orn/Lys/Arg decarboxylase, major domain KD35_01550 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain KD35_01555 PF02223 Thymidylate kinase KD35_01560 PF09115 DNA polymerase III, delta subunit, C terminal KD35_01565 PF04468 PSP1 C-terminal conserved region KD35_01570 PF06156 Initiation control protein YabA KD35_01575 PF05175 Methyltransferase small domain KD35_01580 PF01541 GIY-YIG catalytic domain KD35_01585 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KD35_01590 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin KD35_01590 PF18277 AbrB C-terminal domain KD35_01595 PF09334 tRNA synthetases class I (M) KD35_01595 PF08264 Anticodon-binding domain of tRNA KD35_01595 PF01588 Putative tRNA binding domain KD35_01600 PF01026 TatD related DNase KD35_01605 PF13662 Toprim domain KD35_01605 PF13331 Domain of unknown function (DUF4093) KD35_01610 PF00398 Ribosomal RNA adenine dimethylase KD35_01615 PF05582 YabG peptidase U57 KD35_01620 PF06257 Biofilm formation stimulator VEG KD35_01625 PF00269 Small, acid-soluble spore proteins, alpha/beta type KD35_01630 PF00288 GHMP kinases N terminal domain KD35_01630 PF08544 GHMP kinases C terminal KD35_01635 PF09182 Bacterial purine repressor, N-terminal KD35_01635 PF00156 Phosphoribosyl transferase domain KD35_01640 PF01042 Endoribonuclease L-PSP KD35_01645 PF04026 SpoVG KD35_01650 PF00483 Nucleotidyl transferase KD35_01650 PF00132 Bacterial transferase hexapeptide (six repeats) KD35_01655 PF14572 Phosphoribosyl synthetase-associated domain KD35_01655 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KD35_01660 PF01195 Peptidyl-tRNA hydrolase KD35_01670 PF00271 Helicase conserved C-terminal domain KD35_01670 PF03461 TRCF domain KD35_01670 PF02559 CarD-like/TRCF domain KD35_01670 PF00270 DEAD/DEAH box helicase KD35_01670 PF17757 UvrB interaction domain KD35_01675 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin KD35_01675 PF15714 Stage V sporulation protein T C-terminal, transcription factor KD35_01680 PF01943 Polysaccharide biosynthesis protein KD35_01680 PF14667 Polysaccharide biosynthesis C-terminal domain KD35_01685 PF03819 MazG nucleotide pyrophosphohydrolase domain KD35_01685 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KD35_01690 PF01479 S4 domain KD35_01695 PF07873 YabP family KD35_01700 PF09578 Spore cortex protein YabQ (Spore_YabQ) KD35_01710 PF00575 S1 RNA binding domain KD35_01725 PF07228 Stage II sporulation protein E (SpoIIE) KD35_01730 PF01171 PP-loop family KD35_01730 PF09179 TilS substrate binding domain KD35_01730 PF11734 TilS substrate C-terminal domain KD35_01740 PF00004 ATPase family associated with various cellular activities (AAA) KD35_01740 PF17862 AAA+ lid domain KD35_01740 PF01434 Peptidase family M41 KD35_01740 PF06480 FtsH Extracellular KD35_01745 PF03309 Type III pantothenate kinase KD35_01750 PF01430 Hsp33 protein KD35_01755 PF00291 Pyridoxal-phosphate dependent enzyme KD35_01760 PF00425 chorismate binding enzyme KD35_01760 PF04715 Anthranilate synthase component I, N terminal region KD35_01765 PF00117 Glutamine amidotransferase class-I KD35_01770 PF01063 Amino-transferase class IV KD35_01775 PF00809 Pterin binding enzyme KD35_01780 PF02152 Dihydroneopterin aldolase KD35_01785 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) KD35_01790 PF01381 Helix-turn-helix KD35_01795 PF01207 Dihydrouridine synthase (Dus) KD35_01800 PF01336 OB-fold nucleic acid binding domain KD35_01800 PF00152 tRNA synthetases class II (D, K and N) KD35_01820 PF17727 CtsR C-terminal dimerization domain KD35_01820 PF05848 CtsR N-terminal HTH domain KD35_01825 PF02151 UvrB/uvrC motif KD35_01830 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain KD35_01835 PF10431 C-terminal, D2-small domain, of ClpB protein KD35_01835 PF02861 Clp amino terminal domain, pathogenicity island component KD35_01835 PF07724 AAA domain (Cdc48 subfamily) KD35_01835 PF00004 ATPase family associated with various cellular activities (AAA) KD35_01835 PF17871 AAA lid domain KD35_01840 PF18073 Rubredoxin metal binding domain KD35_01845 PF02457 DisA bacterial checkpoint controller nucleotide-binding KD35_01845 PF10635 DisA bacterial checkpoint controller linker region KD35_01855 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase KD35_01860 PF02542 YgbB family KD35_01865 PF00749 tRNA synthetases class I (E and Q), catalytic domain KD35_01870 PF06426 Serine acetyltransferase, N-terminal KD35_01870 PF00132 Bacterial transferase hexapeptide (six repeats) KD35_01875 PF09190 DALR domain KD35_01875 PF01406 tRNA synthetases class I (C) catalytic domain KD35_01880 PF00636 Ribonuclease III domain KD35_01885 PF08032 RNA 2'-O ribose methyltransferase substrate binding KD35_01885 PF00588 SpoU rRNA Methylase family KD35_01890 PF05991 YacP-like NYN domain KD35_01895 PF08281 Sigma-70, region 4 KD35_01895 PF04542 Sigma-70 region 2 KD35_01900 PF00471 Ribosomal protein L33 KD35_01905 PF00584 SecE/Sec61-gamma subunits of protein translocation complex KD35_01910 PF02357 Transcription termination factor nusG KD35_01910 PF00467 KOW motif KD35_01915 PF00298 Ribosomal protein L11, RNA binding domain KD35_01915 PF03946 Ribosomal protein L11, N-terminal domain KD35_01920 PF00687 Ribosomal protein L1p/L10e family KD35_01925 PF00466 Ribosomal protein L10 KD35_01930 PF00542 Ribosomal protein L7/L12 C-terminal domain KD35_01930 PF16320 Ribosomal protein L7/L12 dimerisation domain KD35_01935 PF05175 Methyltransferase small domain KD35_01940 PF04563 RNA polymerase beta subunit KD35_01940 PF04565 RNA polymerase Rpb2, domain 3 KD35_01940 PF10385 RNA polymerase beta subunit external 1 domain KD35_01940 PF04561 RNA polymerase Rpb2, domain 2 KD35_01940 PF00562 RNA polymerase Rpb2, domain 6 KD35_01940 PF04560 RNA polymerase Rpb2, domain 7 KD35_01945 PF04997 RNA polymerase Rpb1, domain 1 KD35_01945 PF00623 RNA polymerase Rpb1, domain 2 KD35_01945 PF04998 RNA polymerase Rpb1, domain 5 KD35_01945 PF04983 RNA polymerase Rpb1, domain 3 KD35_01945 PF05000 RNA polymerase Rpb1, domain 4 KD35_01950 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KD35_01955 PF00164 Ribosomal protein S12/S23 KD35_01960 PF00177 Ribosomal protein S7p/S5e KD35_01965 PF00009 Elongation factor Tu GTP binding domain KD35_01965 PF03144 Elongation factor Tu domain 2 KD35_01965 PF03764 Elongation factor G, domain IV KD35_01965 PF14492 Elongation Factor G, domain II KD35_01965 PF00679 Elongation factor G C-terminus KD35_01970 PF03143 Elongation factor Tu C-terminal domain KD35_01970 PF00009 Elongation factor Tu GTP binding domain KD35_01970 PF03144 Elongation factor Tu domain 2 KD35_01975 PF00338 Ribosomal protein S10p/S20e KD35_01980 PF00297 Ribosomal protein L3 KD35_01985 PF00573 Ribosomal protein L4/L1 family KD35_01990 PF00276 Ribosomal protein L23 KD35_01995 PF00181 Ribosomal Proteins L2, RNA binding domain KD35_01995 PF03947 Ribosomal Proteins L2, C-terminal domain KD35_02000 PF00203 Ribosomal protein S19 KD35_02005 PF00237 Ribosomal protein L22p/L17e KD35_02010 PF00189 Ribosomal protein S3, C-terminal domain KD35_02010 PF07650 KH domain KD35_02015 PF00252 Ribosomal protein L16p/L10e KD35_02020 PF00831 Ribosomal L29 protein KD35_02025 PF00366 Ribosomal protein S17 KD35_02030 PF00238 Ribosomal protein L14p/L23e KD35_02035 PF00467 KOW motif KD35_02035 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 KD35_02040 PF00281 Ribosomal protein L5 KD35_02040 PF00673 ribosomal L5P family C-terminus KD35_02045 PF00253 Ribosomal protein S14p/S29e KD35_02050 PF00410 Ribosomal protein S8 KD35_02055 PF00347 Ribosomal protein L6 KD35_02060 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast KD35_02065 PF03719 Ribosomal protein S5, C-terminal domain KD35_02065 PF00333 Ribosomal protein S5, N-terminal domain KD35_02070 PF00327 Ribosomal protein L30p/L7e KD35_02075 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A KD35_02080 PF00344 SecY translocase KD35_02085 PF05191 Adenylate kinase, active site lid KD35_02090 PF00557 Metallopeptidase family M24 KD35_02095 PF01176 Translation initiation factor 1A / IF-1 KD35_02100 PF00444 Ribosomal protein L36 KD35_02105 PF00416 Ribosomal protein S13/S18 KD35_02110 PF00411 Ribosomal protein S11 KD35_02115 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain KD35_02115 PF01000 RNA polymerase Rpb3/RpoA insert domain KD35_02115 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain KD35_02120 PF01196 Ribosomal protein L17 KD35_02125 PF00005 ABC transporter KD35_02130 PF00005 ABC transporter KD35_02135 PF02361 Cobalt transport protein KD35_02140 PF01416 tRNA pseudouridine synthase KD35_02145 PF00572 Ribosomal protein L13 KD35_02150 PF00380 Ribosomal protein S9/S16 KD35_02160 PF01520 N-acetylmuramoyl-L-alanine amidase KD35_02165 PF10609 NUBPL iron-transfer P-loop NTPase KD35_02170 PF17898 Spore germination GerD central core domain KD35_02175 PF14089 KinB-signalling pathway activation in sporulation KD35_02180 PF01522 Polysaccharide deacetylase KD35_02250 PF02595 Glycerate kinase family KD35_02255 PF02595 Glycerate kinase family KD35_02260 PF00491 Arginase family KD35_02265 PF02457 DisA bacterial checkpoint controller nucleotide-binding KD35_02270 PF07949 YbbR-like protein KD35_02275 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KD35_02275 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KD35_02275 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KD35_02275 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KD35_02285 PF01380 SIS domain KD35_02290 PF00561 alpha/beta hydrolase fold KD35_02295 PF00392 Bacterial regulatory proteins, gntR family KD35_02295 PF07729 FCD domain KD35_02305 PF02447 GntP family permease KD35_02310 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain KD35_02310 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KD35_02315 PF00326 Prolyl oligopeptidase family KD35_02315 PF07676 WD40-like Beta Propeller Repeat KD35_02355 PF00528 Binding-protein-dependent transport system inner membrane component KD35_02360 PF00005 ABC transporter KD35_02360 PF09383 NIL domain KD35_02365 PF03180 NLPA lipoprotein KD35_02380 PF01565 FAD binding domain KD35_02385 PF07690 Major Facilitator Superfamily KD35_02395 PF07690 Major Facilitator Superfamily KD35_02410 PF00528 Binding-protein-dependent transport system inner membrane component KD35_02415 PF00528 Binding-protein-dependent transport system inner membrane component KD35_02415 PF12911 N-terminal TM domain of oligopeptide transport permease C KD35_02420 PF00005 ABC transporter KD35_02420 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KD35_02425 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KD35_02425 PF00005 ABC transporter KD35_02430 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KD35_02440 PF12833 Helix-turn-helix domain KD35_02455 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KD35_02460 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KD35_02465 PF00248 Aldo/keto reductase family KD35_02470 PF14748 Pyrroline-5-carboxylate reductase dimerisation KD35_02470 PF03807 NADP oxidoreductase coenzyme F420-dependent KD35_02480 PF04973 Nicotinamide mononucleotide transporter KD35_02485 PF06800 Sugar transport protein KD35_02490 PF00528 Binding-protein-dependent transport system inner membrane component KD35_02505 PF12728 Helix-turn-helix domain KD35_02505 PF12727 PBP superfamily domain KD35_02520 PF03466 LysR substrate binding domain KD35_02520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KD35_02525 PF00892 EamA-like transporter family KD35_02530 PF14142 YrzO-like protein KD35_02535 PF01553 Acyltransferase KD35_02545 PF00356 Bacterial regulatory proteins, lacI family KD35_02545 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family KD35_02555 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KD35_02555 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KD35_02570 PF01026 TatD related DNase KD35_02575 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) KD35_02600 PF12848 ABC transporter KD35_02600 PF16326 ABC transporter C-terminal domain KD35_02600 PF00005 ABC transporter KD35_02615 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KD35_02620 PF00528 Binding-protein-dependent transport system inner membrane component KD35_02630 PF00005 ABC transporter KD35_02630 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KD35_02635 PF00005 ABC transporter KD35_02635 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KD35_02675 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KD35_02680 PF01557 Fumarylacetoacetate (FAA) hydrolase family KD35_02690 PF07690 Major Facilitator Superfamily KD35_02695 PF01820 D-ala D-ala ligase N-terminus KD35_02695 PF07478 D-ala D-ala ligase C-terminus KD35_02700 PF01820 D-ala D-ala ligase N-terminus KD35_02700 PF07478 D-ala D-ala ligase C-terminus KD35_02705 PF08245 Mur ligase middle domain KD35_02705 PF02875 Mur ligase family, glutamate ligase domain KD35_02705 PF01225 Mur ligase family, catalytic domain KD35_02710 PF00270 DEAD/DEAH box helicase KD35_02710 PF00271 Helicase conserved C-terminal domain KD35_02715 PF03851 UV-endonuclease UvdE KD35_02720 PF01694 Rhomboid family KD35_02725 PF01648 4'-phosphopantetheinyl transferase superfamily KD35_02735 PF01168 Alanine racemase, N-terminal domain KD35_02735 PF00842 Alanine racemase, C-terminal domain KD35_02740 PF01402 Ribbon-helix-helix protein, copG family KD35_02745 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system KD35_02750 PF16921 Tex protein YqgF-like domain KD35_02750 PF09371 Tex-like protein N-terminal domain KD35_02750 PF00575 S1 RNA binding domain KD35_02750 PF17674 HHH domain KD35_02760 PF17283 SprT-like zinc ribbon domain KD35_02760 PF10263 SprT-like family KD35_02845 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE KD35_02850 PF00814 Glycoprotease family KD35_02855 PF00583 Acetyltransferase (GNAT) family KD35_02860 PF00814 Glycoprotease family KD35_02865 PF12848 ABC transporter KD35_02865 PF16326 ABC transporter C-terminal domain KD35_02865 PF00005 ABC transporter KD35_02870 PF02629 CoA binding domain KD35_02870 PF06971 Putative DNA-binding protein N-terminus KD35_02880 PF02517 CPBP intramembrane metalloprotease KD35_02885 PF00166 Chaperonin 10 Kd subunit KD35_02890 PF00118 TCP-1/cpn60 chaperonin family KD35_02895 PF00117 Glutamine amidotransferase class-I KD35_02895 PF02540 NAD synthase KD35_02895 PF00958 GMP synthase C terminal domain KD35_02900 PF00860 Permease family KD35_02905 PF00072 Response regulator receiver domain KD35_02905 PF00486 Transcriptional regulatory protein, C terminal KD35_02910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_02910 PF00512 His Kinase A (phospho-acceptor) domain KD35_02910 PF00989 PAS fold KD35_02910 PF16736 Single Cache-like KD35_02930 PF14307 Glycosyltransferase WbsX KD35_02930 PF05045 Rhamnan synthesis protein F KD35_02940 PF08241 Methyltransferase domain KD35_02980 PF02673 Bacitracin resistance protein BacA KD35_02990 PF00005 ABC transporter KD35_02995 PF00512 His Kinase A (phospho-acceptor) domain KD35_02995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_03000 PF00486 Transcriptional regulatory protein, C terminal KD35_03000 PF00072 Response regulator receiver domain KD35_03020 PF00731 AIR carboxylase KD35_03025 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain KD35_03025 PF02222 ATP-grasp domain KD35_03030 PF10397 Adenylosuccinate lyase C-terminus KD35_03030 PF00206 Lyase KD35_03035 PF01259 SAICAR synthetase KD35_03040 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase KD35_03050 PF00586 AIR synthase related protein, N-terminal domain KD35_03050 PF02769 AIR synthase related protein, C-terminal domain KD35_03050 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain KD35_03055 PF00156 Phosphoribosyl transferase domain KD35_03060 PF00586 AIR synthase related protein, N-terminal domain KD35_03060 PF02769 AIR synthase related protein, C-terminal domain KD35_03065 PF00551 Formyl transferase KD35_03070 PF02142 MGS-like domain KD35_03070 PF01808 AICARFT/IMPCHase bienzyme KD35_03075 PF02843 Phosphoribosylglycinamide synthetase, C domain KD35_03075 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KD35_03075 PF02844 Phosphoribosylglycinamide synthetase, N domain KD35_03095 PF01884 PcrB family KD35_03100 PF00580 UvrD/REP helicase N-terminal domain KD35_03100 PF13361 UvrD-like helicase C-terminal domain KD35_03105 PF12826 Helix-hairpin-helix motif KD35_03105 PF01653 NAD-dependent DNA ligase adenylation domain KD35_03105 PF00533 BRCA1 C Terminus (BRCT) domain KD35_03105 PF03119 NAD-dependent DNA ligase C4 zinc finger domain KD35_03105 PF03120 NAD-dependent DNA ligase OB-fold domain KD35_03110 PF07537 CamS sex pheromone cAM373 precursor KD35_03115 PF01925 Sulfite exporter TauE/SafE KD35_03120 PF00171 Aldehyde dehydrogenase family KD35_03130 PF00857 Isochorismatase family KD35_03135 PF09383 NIL domain KD35_03135 PF00005 ABC transporter KD35_03140 PF00528 Binding-protein-dependent transport system inner membrane component KD35_03145 PF03180 NLPA lipoprotein KD35_03165 PF01047 MarR family KD35_03175 PF02686 Glu-tRNAGln amidotransferase C subunit KD35_03180 PF01425 Amidase KD35_03185 PF02637 GatB domain KD35_03185 PF02934 GatB/GatE catalytic domain KD35_03190 PF00781 Diacylglycerol kinase catalytic domain KD35_03195 PF13419 Haloacid dehalogenase-like hydrolase KD35_03200 PF00202 Aminotransferase class-III KD35_03205 PF00158 Sigma-54 interaction domain KD35_03210 PF00171 Aldehyde dehydrogenase family KD35_03215 PF00893 Small Multidrug Resistance protein KD35_03220 PF02073 Thermophilic metalloprotease (M29) KD35_03235 PF07670 Nucleoside recognition KD35_03235 PF01773 Na+ dependent nucleoside transporter N-terminus KD35_03235 PF07662 Na+ dependent nucleoside transporter C-terminus KD35_03240 PF01938 TRAM domain KD35_03240 PF02475 Met-10+ like-protein KD35_03240 PF05958 tRNA (Uracil-5-)-methyltransferase KD35_03245 PF01207 Dihydrouridine synthase (Dus) KD35_03255 PF07308 Protein of unknown function (DUF1456) KD35_03270 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KD35_03270 PF13378 Enolase C-terminal domain-like KD35_03285 PF07687 Peptidase dimerisation domain KD35_03285 PF01546 Peptidase family M20/M25/M40 KD35_03295 PF07992 Pyridine nucleotide-disulphide oxidoreductase KD35_03295 PF13192 Thioredoxin domain KD35_03300 PF00578 AhpC/TSA family KD35_03305 PF01636 Phosphotransferase enzyme family KD35_03315 PF00596 Class II Aldolase and Adducin N-terminal domain KD35_03320 PF01032 FecCD transport family KD35_03325 PF01032 FecCD transport family KD35_03330 PF01497 Periplasmic binding protein KD35_03335 PF07992 Pyridine nucleotide-disulphide oxidoreductase KD35_03350 PF12728 Helix-turn-helix domain KD35_03385 PF13188 PAS domain KD35_03385 PF00989 PAS fold KD35_03385 PF13426 PAS domain KD35_03385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_03385 PF00512 His Kinase A (phospho-acceptor) domain KD35_03405 PF10127 RNA repair pathway DNA polymerase beta family KD35_03410 PF07690 Major Facilitator Superfamily KD35_03415 PF01266 FAD dependent oxidoreductase KD35_03415 PF00355 Rieske [2Fe-2S] domain KD35_03425 PF00528 Binding-protein-dependent transport system inner membrane component KD35_03430 PF00497 Bacterial extracellular solute-binding proteins, family 3 KD35_03435 PF00005 ABC transporter KD35_03445 PF12729 Four helix bundle sensory module for signal transduction KD35_03445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KD35_03445 PF00672 HAMP domain KD35_03450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KD35_03450 PF12729 Four helix bundle sensory module for signal transduction KD35_03450 PF00672 HAMP domain KD35_03455 PF16657 Maltogenic Amylase, C-terminal domain KD35_03455 PF00128 Alpha amylase, catalytic domain KD35_03460 PF02378 Phosphotransferase system, EIIC KD35_03460 PF00367 phosphotransferase system, EIIB KD35_03460 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 KD35_03465 PF03372 Endonuclease/Exonuclease/phosphatase family KD35_03470 PF01061 ABC-2 type transporter KD35_03475 PF01131 DNA topoisomerase KD35_03475 PF01751 Toprim domain KD35_03480 PF02110 Hydroxyethylthiazole kinase family KD35_03485 PF02581 Thiamine monophosphate synthase KD35_03490 PF03605 Anaerobic c4-dicarboxylate membrane transporter KD35_03495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KD35_03495 PF00672 HAMP domain KD35_03500 PF01910 Thiamine-binding protein KD35_03505 PF00528 Binding-protein-dependent transport system inner membrane component KD35_03515 PF00005 ABC transporter KD35_03520 PF12848 ABC transporter KD35_03520 PF00005 ABC transporter KD35_03525 PF00704 Glycosyl hydrolases family 18 KD35_03525 PF00041 Fibronectin type III domain KD35_03545 PF08360 QacR-like protein, C-terminal region KD35_03545 PF00440 Bacterial regulatory proteins, tetR family KD35_03565 PF11700 Vacuole effluxer Atg22 like KD35_03580 PF09180 Prolyl-tRNA synthetase, C-terminal KD35_03580 PF03129 Anticodon binding domain KD35_03580 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KD35_03590 PF00480 ROK family KD35_03595 PF02342 TerD domain KD35_03600 PF02342 TerD domain KD35_03605 PF02342 TerD domain KD35_03610 PF03741 Integral membrane protein TerC family KD35_03615 PF14266 Putative component of 'biosynthetic module' KD35_03620 PF05816 Toxic anion resistance protein (TelA) KD35_03625 PF00689 Cation transporting ATPase, C-terminus KD35_03625 PF00690 Cation transporter/ATPase, N-terminus KD35_03630 PF06569 Protein of unknown function (DUF1128) KD35_03635 PF01451 Low molecular weight phosphotyrosine protein phosphatase KD35_03645 PF03631 Virulence factor BrkB KD35_03655 PF00892 EamA-like transporter family KD35_03675 PF09335 SNARE associated Golgi protein KD35_03690 PF16242 Pyridoxamine 5'-phosphate oxidase like KD35_03695 PF01699 Sodium/calcium exchanger protein KD35_03700 PF14167 YfkD-like protein KD35_03705 PF08756 YfkB-like domain KD35_03705 PF04055 Radical SAM superfamily KD35_03715 PF05681 Fumarate hydratase (Fumerase) KD35_03715 PF05683 Fumarase C-terminus KD35_03720 PF01522 Polysaccharide deacetylase KD35_03730 PF00730 HhH-GPD superfamily base excision DNA repair protein KD35_03735 PF05958 tRNA (Uracil-5-)-methyltransferase KD35_03735 PF01938 TRAM domain KD35_03740 PF00589 Phage integrase family KD35_03740 PF14659 Phage integrase, N-terminal SAM-like domain KD35_03745 PF01381 Helix-turn-helix KD35_03760 PF01381 Helix-turn-helix KD35_03795 PF07319 Primosomal protein DnaI N-terminus KD35_03795 PF01695 IstB-like ATP binding protein KD35_03890 PF00589 Phage integrase family KD35_03895 PF00589 Phage integrase family KD35_04010 PF01183 Glycosyl hydrolases family 25 KD35_04020 PF01416 tRNA pseudouridine synthase KD35_04030 PF02954 Bacterial regulatory protein, Fis family KD35_04030 PF13426 PAS domain KD35_04030 PF00158 Sigma-54 interaction domain KD35_04040 PF00324 Amino acid permease KD35_04045 PF07687 Peptidase dimerisation domain KD35_04045 PF01546 Peptidase family M20/M25/M40 KD35_04075 PF04960 Glutaminase KD35_04080 PF00367 phosphotransferase system, EIIB KD35_04080 PF02378 Phosphotransferase system, EIIC KD35_04085 PF00144 Beta-lactamase KD35_04100 PF00535 Glycosyl transferase family 2 KD35_04105 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KD35_04105 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KD35_04105 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KD35_04110 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KD35_04110 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KD35_04110 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KD35_04115 PF00551 Formyl transferase KD35_04115 PF02911 Formyl transferase, C-terminal domain KD35_04115 PF01370 NAD dependent epimerase/dehydratase family KD35_04120 PF00535 Glycosyl transferase family 2 KD35_04130 PF01228 Glycine radical KD35_04130 PF02901 Pyruvate formate lyase-like KD35_04135 PF04055 Radical SAM superfamily KD35_04140 PF04101 Glycosyltransferase family 28 C-terminal domain KD35_04140 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase KD35_04155 PF01979 Amidohydrolase family KD35_04160 PF01370 NAD dependent epimerase/dehydratase family KD35_04160 PF08338 Domain of unknown function (DUF1731) KD35_04165 PF02631 RecX family KD35_04180 PF08176 Small acid-soluble spore protein K family KD35_04185 PF14043 WVELL protein KD35_04190 PF04307 LexA-binding, inner membrane-associated putative hydrolase KD35_04195 PF14815 NUDIX domain KD35_04195 PF00730 HhH-GPD superfamily base excision DNA repair protein KD35_04205 PF04259 Small, acid-soluble spore protein, gamma-type KD35_04210 PF14182 YgaB-like protein KD35_04215 PF04167 Protein of unknown function (DUF402) KD35_04220 PF00005 ABC transporter KD35_04220 PF00664 ABC transporter transmembrane region KD35_04225 PF06081 Aromatic acid exporter family member 1 KD35_04230 PF04898 Glutamate synthase central domain KD35_04230 PF00310 Glutamine amidotransferases class-II KD35_04230 PF01645 Conserved region in glutamate synthase KD35_04230 PF01493 GXGXG motif KD35_04235 PF00202 Aminotransferase class-III KD35_04240 PF00005 ABC transporter KD35_04255 PF07885 Ion channel KD35_04260 PF00578 AhpC/TSA family KD35_04265 PF01475 Ferric uptake regulator family KD35_04270 PF11023 Zinc-ribbon containing domain KD35_04370 PF01709 Transcriptional regulator KD35_04375 PF00293 NUDIX domain KD35_04375 PF13344 Haloacid dehalogenase-like hydrolase KD35_04380 PF00905 Penicillin binding protein transpeptidase domain KD35_04380 PF00912 Transglycosylase KD35_04385 PF13462 Thioredoxin KD35_04395 PF08331 Domain of unknown function (DUF1730) KD35_04400 PF12671 Putative amidase domain KD35_04405 PF00588 SpoU rRNA Methylase family KD35_04410 PF03707 Bacterial signalling protein N terminal repeat KD35_04410 PF00990 Diguanylate cyclase, GGDEF domain KD35_04410 PF00563 EAL domain KD35_04420 PF06798 PrkA serine protein kinase C-terminal domain KD35_04420 PF08298 PrkA AAA domain KD35_04430 PF04285 Protein of unknown function (DUF444) KD35_04445 PF02028 BCCT, betaine/carnitine/choline family transporter KD35_04450 PF18496 Collagenase G catalytic helper subdomain KD35_04450 PF08453 Peptidase family M9 N-terminal KD35_04450 PF01752 Collagenase KD35_04460 PF15975 Flotillin KD35_04460 PF01145 SPFH domain / Band 7 family KD35_04465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KD35_04465 PF00672 HAMP domain KD35_04465 PF02743 Cache domain KD35_04470 PF00989 PAS fold KD35_04470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_04470 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain KD35_04470 PF17203 Single cache domain 3 KD35_04475 PF12431 Transcriptional regulator KD35_04475 PF00072 Response regulator receiver domain KD35_04475 PF08279 HTH domain KD35_04480 PF03600 Citrate transporter KD35_04500 PF04309 Glycerol-3-phosphate responsive antiterminator KD35_04505 PF17912 MalK OB fold domain KD35_04505 PF00005 ABC transporter KD35_04510 PF00528 Binding-protein-dependent transport system inner membrane component KD35_04515 PF00528 Binding-protein-dependent transport system inner membrane component KD35_04520 PF13416 Bacterial extracellular solute-binding protein KD35_04525 PF00149 Calcineurin-like phosphoesterase KD35_04530 PF00072 Response regulator receiver domain KD35_04530 PF00486 Transcriptional regulatory protein, C terminal KD35_04535 PF00512 His Kinase A (phospho-acceptor) domain KD35_04535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_04545 PF13529 Peptidase_C39 like family KD35_04550 PF02743 Cache domain KD35_04550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KD35_04550 PF00672 HAMP domain KD35_04555 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain KD35_04555 PF17203 Single cache domain 3 KD35_04555 PF00989 PAS fold KD35_04555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_04560 PF00072 Response regulator receiver domain KD35_04565 PF03390 2-hydroxycarboxylate transporter family KD35_04570 PF03949 Malic enzyme, NAD binding domain KD35_04570 PF00390 Malic enzyme, N-terminal domain KD35_04580 PF00892 EamA-like transporter family KD35_04585 PF00155 Aminotransferase class I and II KD35_04585 PF00392 Bacterial regulatory proteins, gntR family KD35_04595 PF00512 His Kinase A (phospho-acceptor) domain KD35_04595 PF18698 Histidine kinase sensor domain KD35_04595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_04595 PF00672 HAMP domain KD35_04595 PF00989 PAS fold KD35_04600 PF00072 Response regulator receiver domain KD35_04600 PF00486 Transcriptional regulatory protein, C terminal KD35_04610 PF00583 Acetyltransferase (GNAT) family KD35_04610 PF13508 Acetyltransferase (GNAT) domain KD35_04615 PF02634 FdhD/NarQ family KD35_04620 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region KD35_04620 PF00037 4Fe-4S binding domain KD35_04620 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KD35_04620 PF01568 Molydopterin dinucleotide binding domain KD35_04620 PF00384 Molybdopterin oxidoreductase KD35_04625 PF07849 Protein of unknown function (DUF1641) KD35_04635 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KD35_04635 PF05222 Alanine dehydrogenase/PNT, N-terminal domain KD35_04640 PF13520 Amino acid permease KD35_04645 PF01022 Bacterial regulatory protein, arsR family KD35_04650 PF00403 Heavy-metal-associated domain KD35_04655 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain KD35_04655 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family KD35_04655 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain KD35_04665 PF01447 Thermolysin metallopeptidase, catalytic domain KD35_04665 PF02868 Thermolysin metallopeptidase, alpha-helical domain KD35_04665 PF03413 Peptidase propeptide and YPEB domain KD35_04665 PF07504 Fungalysin/Thermolysin Propeptide Motif KD35_04685 PF04294 VanW like protein KD35_04690 PF03816 Cell envelope-related transcriptional attenuator domain KD35_04695 PF01773 Na+ dependent nucleoside transporter N-terminus KD35_04695 PF07662 Na+ dependent nucleoside transporter C-terminus KD35_04700 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KD35_04705 PF03471 Transporter associated domain KD35_04705 PF00571 CBS domain KD35_04705 PF01595 Cyclin M transmembrane N-terminal domain KD35_04710 PF00206 Lyase KD35_04710 PF10415 Fumarase C C-terminus KD35_04715 PF02652 L-lactate permease KD35_04720 PF01022 Bacterial regulatory protein, arsR family KD35_04725 PF08141 Small acid-soluble spore protein H family KD35_04730 PF00854 POT family KD35_04735 PF01497 Periplasmic binding protein KD35_04740 PF01032 FecCD transport family KD35_04745 PF01032 FecCD transport family KD35_04750 PF00005 ABC transporter KD35_04755 PF08241 Methyltransferase domain KD35_04760 PF00155 Aminotransferase class I and II KD35_04765 PF01370 NAD dependent epimerase/dehydratase family KD35_04770 PF00293 NUDIX domain KD35_04770 PF13344 Haloacid dehalogenase-like hydrolase KD35_04775 PF00092 von Willebrand factor type A domain KD35_04780 PF07728 AAA domain (dynein-related subfamily) KD35_04785 PF13396 Phospholipase_D-nuclease N-terminal KD35_04785 PF13091 PLD-like domain KD35_04800 PF00990 Diguanylate cyclase, GGDEF domain KD35_04800 PF00563 EAL domain KD35_04800 PF03707 Bacterial signalling protein N terminal repeat KD35_04805 PF13520 Amino acid permease KD35_04810 PF00392 Bacterial regulatory proteins, gntR family KD35_04810 PF07702 UTRA domain KD35_04815 PF00367 phosphotransferase system, EIIB KD35_04815 PF02378 Phosphotransferase system, EIIC KD35_04820 PF16657 Maltogenic Amylase, C-terminal domain KD35_04820 PF00128 Alpha amylase, catalytic domain KD35_04835 PF03323 Bacillus/Clostridium GerA spore germination protein KD35_04845 PF01636 Phosphotransferase enzyme family KD35_04850 PF01235 Sodium:alanine symporter family KD35_04855 PF00005 ABC transporter KD35_04860 PF00497 Bacterial extracellular solute-binding proteins, family 3 KD35_04865 PF00528 Binding-protein-dependent transport system inner membrane component KD35_04870 PF00528 Binding-protein-dependent transport system inner membrane component KD35_04875 PF00324 Amino acid permease KD35_04900 PF13280 WYL domain KD35_04900 PF08279 HTH domain KD35_04905 PF01872 RibD C-terminal domain KD35_04910 PF00672 HAMP domain KD35_04910 PF18698 Histidine kinase sensor domain KD35_04910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_04910 PF00989 PAS fold KD35_04910 PF00512 His Kinase A (phospho-acceptor) domain KD35_04915 PF00072 Response regulator receiver domain KD35_04915 PF00486 Transcriptional regulatory protein, C terminal KD35_04925 PF01740 STAS domain KD35_04925 PF00916 Sulfate permease family KD35_04930 PF00582 Universal stress protein family KD35_04940 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KD35_04945 PF00528 Binding-protein-dependent transport system inner membrane component KD35_04950 PF00528 Binding-protein-dependent transport system inner membrane component KD35_04955 PF00005 ABC transporter KD35_04955 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KD35_04960 PF00005 ABC transporter KD35_04960 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KD35_04965 PF07690 Major Facilitator Superfamily KD35_04970 PF01047 MarR family KD35_04975 PF07690 Major Facilitator Superfamily KD35_04980 PF07690 Major Facilitator Superfamily KD35_04985 PF00356 Bacterial regulatory proteins, lacI family KD35_04990 PF00294 pfkB family carbohydrate kinase KD35_04995 PF05025 RbsD / FucU transport protein family KD35_05000 PF00005 ABC transporter KD35_05005 PF02653 Branched-chain amino acid transport system / permease component KD35_05010 PF13407 Periplasmic binding protein domain KD35_05015 PF00923 Transaldolase/Fructose-6-phosphate aldolase KD35_05020 PF05547 Immune inhibitor A peptidase M6 KD35_05035 PF00107 Zinc-binding dehydrogenase KD35_05035 PF08240 Alcohol dehydrogenase GroES-like domain KD35_05045 PF00882 Zinc dependent phospholipase C KD35_05050 PF03372 Endonuclease/Exonuclease/phosphatase family KD35_05075 PF02673 Bacitracin resistance protein BacA KD35_05080 PF02743 Cache domain KD35_05080 PF00672 HAMP domain KD35_05080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KD35_05085 PF01476 LysM domain KD35_05085 PF06725 3D domain KD35_05090 PF01381 Helix-turn-helix KD35_05100 PF04203 Sortase domain KD35_05105 PF00854 POT family KD35_05110 PF05525 Branched-chain amino acid transport protein KD35_05125 PF00324 Amino acid permease KD35_05130 PF00860 Permease family KD35_05155 PF02080 TrkA-C domain KD35_05155 PF02254 TrkA-N domain KD35_05155 PF00999 Sodium/hydrogen exchanger family KD35_05165 PF00510 Cytochrome c oxidase subunit III KD35_05170 PF00115 Cytochrome C and Quinol oxidase polypeptide I KD35_05175 PF02790 Cytochrome C oxidase subunit II, transmembrane domain KD35_05180 PF00324 Amino acid permease KD35_05185 PF13529 Peptidase_C39 like family KD35_05190 PF07687 Peptidase dimerisation domain KD35_05190 PF01546 Peptidase family M20/M25/M40 KD35_05195 PF11755 Protein of unknown function (DUF3311) KD35_05200 PF00474 Sodium:solute symporter family KD35_05205 PF03323 Bacillus/Clostridium GerA spore germination protein KD35_05210 PF03845 Spore germination protein KD35_05215 PF05504 Spore germination B3/ GerAC like, C-terminal KD35_05225 PF17910 FeoB cytosolic helical domain KD35_05225 PF02421 Ferrous iron transport protein B KD35_05225 PF07670 Nucleoside recognition KD35_05225 PF07664 Ferrous iron transport protein B C terminus KD35_05230 PF02421 Ferrous iron transport protein B KD35_05230 PF07670 Nucleoside recognition KD35_05230 PF07664 Ferrous iron transport protein B C terminus KD35_05230 PF17910 FeoB cytosolic helical domain KD35_05235 PF17910 FeoB cytosolic helical domain KD35_05235 PF07670 Nucleoside recognition KD35_05235 PF07664 Ferrous iron transport protein B C terminus KD35_05235 PF04023 FeoA domain KD35_05235 PF02421 Ferrous iron transport protein B KD35_05240 PF12849 PBP superfamily domain KD35_05245 PF00528 Binding-protein-dependent transport system inner membrane component KD35_05250 PF00528 Binding-protein-dependent transport system inner membrane component KD35_05260 PF00873 AcrB/AcrD/AcrF family KD35_05380 PF00571 CBS domain KD35_05400 PF08239 Bacterial SH3 domain KD35_05400 PF00246 Zinc carboxypeptidase KD35_05405 PF03070 TENA/THI-4/PQQC family KD35_05410 PF00005 ABC transporter KD35_05415 PF00528 Binding-protein-dependent transport system inner membrane component KD35_05420 PF09084 NMT1/THI5 like KD35_05425 PF02581 Thiamine monophosphate synthase KD35_05430 PF01266 FAD dependent oxidoreductase KD35_05435 PF02597 ThiS family KD35_05440 PF05690 Thiazole biosynthesis protein ThiG KD35_05445 PF00899 ThiF family KD35_05450 PF08543 Phosphomethylpyrimidine kinase KD35_05480 PF03814 Potassium-transporting ATPase A subunit KD35_05490 PF02669 K+-transporting ATPase, c chain KD35_05495 PF02702 Osmosensitive K+ channel His kinase sensor domain KD35_05500 PF07690 Major Facilitator Superfamily KD35_05505 PF01047 MarR family KD35_05520 PF00860 Permease family KD35_05540 PF00294 pfkB family carbohydrate kinase KD35_05550 PF02378 Phosphotransferase system, EIIC KD35_05550 PF00367 phosphotransferase system, EIIB KD35_05555 PF13407 Periplasmic binding protein domain KD35_05555 PF00356 Bacterial regulatory proteins, lacI family KD35_05565 PF00085 Thioredoxin KD35_05570 PF02600 Disulfide bond formation protein DsbB KD35_05575 PF14148 YhdB-like protein KD35_05595 PF03323 Bacillus/Clostridium GerA spore germination protein KD35_05610 PF00881 Nitroreductase family KD35_05615 PF04293 SpoVR like protein KD35_05640 PF07992 Pyridine nucleotide-disulphide oxidoreductase KD35_05640 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KD35_05645 PF02583 Metal-sensitive transcriptional repressor KD35_05650 PF00581 Rhodanese-like domain KD35_05650 PF01206 Sulfurtransferase TusA KD35_05655 PF00581 Rhodanese-like domain KD35_05655 PF00753 Metallo-beta-lactamase superfamily KD35_05660 PF01206 Sulfurtransferase TusA KD35_05665 PF00581 Rhodanese-like domain KD35_05675 PF13686 DsrE/DsrF/DrsH-like family KD35_05680 PF01925 Sulfite exporter TauE/SafE KD35_05690 PF03816 Cell envelope-related transcriptional attenuator domain KD35_05695 PF00107 Zinc-binding dehydrogenase KD35_05695 PF08240 Alcohol dehydrogenase GroES-like domain KD35_05700 PF02690 Na+/Pi-cotransporter KD35_05705 PF07690 Major Facilitator Superfamily KD35_05715 PF08279 HTH domain KD35_05715 PF00874 PRD domain KD35_05715 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KD35_05715 PF05043 Mga helix-turn-helix domain KD35_05720 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit KD35_05725 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KD35_05730 PF02378 Phosphotransferase system, EIIC KD35_05745 PF06725 3D domain KD35_05745 PF01476 LysM domain KD35_05750 PF12704 MacB-like periplasmic core domain KD35_05750 PF02687 FtsX-like permease family KD35_05755 PF00005 ABC transporter KD35_05765 PF09529 Integral membrane protein (intg_mem_TP0381) KD35_05780 PF05525 Branched-chain amino acid transport protein KD35_05785 PF05067 Manganese containing catalase KD35_05790 PF12652 CotJB protein KD35_05795 PF11007 Spore coat associated protein JA (CotJA) KD35_05810 PF02735 Ku70/Ku80 beta-barrel domain KD35_05820 PF09335 SNARE associated Golgi protein KD35_05855 PF13520 Amino acid permease KD35_05860 PF00999 Sodium/hydrogen exchanger family KD35_05870 PF01380 SIS domain KD35_05870 PF01418 Helix-turn-helix domain, rpiR family KD35_05875 PF01380 SIS domain KD35_05880 PF00367 phosphotransferase system, EIIB KD35_05880 PF02378 Phosphotransferase system, EIIC KD35_05890 PF07681 DoxX KD35_05905 PF00892 EamA-like transporter family KD35_05910 PF01037 Lrp/AsnC ligand binding domain KD35_05920 PF00893 Small Multidrug Resistance protein KD35_05925 PF00893 Small Multidrug Resistance protein KD35_05930 PF00440 Bacterial regulatory proteins, tetR family KD35_05930 PF17934 Tetracyclin repressor-like, C-terminal domain KD35_05935 PF07690 Major Facilitator Superfamily KD35_05940 PF01638 HxlR-like helix-turn-helix KD35_05950 PF02525 Flavodoxin-like fold KD35_05955 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KD35_05955 PF12793 Sugar transport-related sRNA regulator N-term KD35_05960 PF07690 Major Facilitator Superfamily KD35_05970 PF01965 DJ-1/PfpI family KD35_05975 PF06628 Catalase-related immune-responsive KD35_05975 PF00199 Catalase KD35_05975 PF18011 C-terminal domain found in long catalases KD35_05985 PF13520 Amino acid permease KD35_05990 PF01177 Asp/Glu/Hydantoin racemase KD35_06000 PF00171 Aldehyde dehydrogenase family KD35_06010 PF00664 ABC transporter transmembrane region KD35_06010 PF00005 ABC transporter KD35_06020 PF00497 Bacterial extracellular solute-binding proteins, family 3 KD35_06025 PF00528 Binding-protein-dependent transport system inner membrane component KD35_06030 PF00005 ABC transporter KD35_06035 PF00269 Small, acid-soluble spore proteins, alpha/beta type KD35_06045 PF14398 YheC/D like ATP-grasp KD35_06055 PF04286 Protein of unknown function (DUF445) KD35_06060 PF06133 Control of competence regulator ComK, YlbF/YmcA KD35_06075 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KD35_06075 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KD35_06075 PF00205 Thiamine pyrophosphate enzyme, central domain KD35_06080 PF03306 Alpha-acetolactate decarboxylase KD35_06090 PF02245 Methylpurine-DNA glycosylase (MPG) KD35_06110 PF04055 Radical SAM superfamily KD35_06115 PF13193 AMP-binding enzyme C-terminal domain KD35_06115 PF00501 AMP-binding enzyme KD35_06125 PF00916 Sulfate permease family KD35_06125 PF01740 STAS domain KD35_06145 PF01043 SecA preprotein cross-linking domain KD35_06145 PF07516 SecA Wing and Scaffold domain KD35_06145 PF07517 SecA DEAD-like domain KD35_06150 PF14667 Polysaccharide biosynthesis C-terminal domain KD35_06150 PF01943 Polysaccharide biosynthesis protein KD35_06160 PF02368 Bacterial Ig-like domain (group 2) KD35_06160 PF13205 Bacterial Ig-like domain KD35_06160 PF00395 S-layer homology domain KD35_06165 PF00395 S-layer homology domain KD35_06175 PF03062 MBOAT, membrane-bound O-acyltransferase family KD35_06180 PF03062 MBOAT, membrane-bound O-acyltransferase family KD35_06195 PF00378 Enoyl-CoA hydratase/isomerase KD35_06215 PF05343 M42 glutamyl aminopeptidase KD35_06220 PF01520 N-acetylmuramoyl-L-alanine amidase KD35_06220 PF00395 S-layer homology domain KD35_06230 PF11121 Protein of unknown function (DUF2639) KD35_06235 PF05544 Proline racemase KD35_06240 PF02423 Ornithine cyclodeaminase/mu-crystallin family KD35_06245 PF18593 CdiI immunity protein KD35_06270 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KD35_06275 PF00528 Binding-protein-dependent transport system inner membrane component KD35_06280 PF00528 Binding-protein-dependent transport system inner membrane component KD35_06280 PF12911 N-terminal TM domain of oligopeptide transport permease C KD35_06290 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KD35_06290 PF00005 ABC transporter KD35_06320 PF00083 Sugar (and other) transporter KD35_06325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_06325 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain KD35_06330 PF08279 HTH domain KD35_06330 PF00072 Response regulator receiver domain KD35_06330 PF12431 Transcriptional regulator KD35_06335 PF03401 Tripartite tricarboxylate transporter family receptor KD35_06340 PF02342 TerD domain KD35_06365 PF13411 MerR HTH family regulatory protein KD35_06365 PF06445 GyrI-like small molecule binding domain KD35_06380 PF03796 DnaB-like helicase C terminal domain KD35_06380 PF00772 DnaB-like helicase N terminal domain KD35_06405 PF01925 Sulfite exporter TauE/SafE KD35_06420 PF07690 Major Facilitator Superfamily KD35_06470 PF00550 Phosphopantetheine attachment site KD35_06470 PF07993 Male sterility protein KD35_06475 PF18665 Tetracyclin repressor-like, C-terminal domain KD35_06475 PF00440 Bacterial regulatory proteins, tetR family KD35_06495 PF01066 CDP-alcohol phosphatidyltransferase KD35_06515 PF02733 Dak1 domain KD35_06525 PF02733 Dak1 domain KD35_06530 PF02525 Flavodoxin-like fold KD35_06535 PF02082 Transcriptional regulator KD35_06560 PF00672 HAMP domain KD35_06560 PF01966 HD domain KD35_06580 PF00395 S-layer homology domain KD35_06605 PF11181 Heat induced stress protein YflT KD35_06610 PF05532 CsbD-like KD35_06625 PF01740 STAS domain KD35_06630 PF13581 Histidine kinase-like ATPase domain KD35_06635 PF04542 Sigma-70 region 2 KD35_06635 PF04545 Sigma-70, region 4 KD35_06635 PF04539 Sigma-70 region 3 KD35_06645 PF13426 PAS domain KD35_06645 PF07228 Stage II sporulation protein E (SpoIIE) KD35_06650 PF01739 CheR methyltransferase, SAM binding domain KD35_06650 PF03705 CheR methyltransferase, all-alpha domain KD35_06655 PF00512 His Kinase A (phospho-acceptor) domain KD35_06655 PF00497 Bacterial extracellular solute-binding proteins, family 3 KD35_06655 PF01627 Hpt domain KD35_06655 PF00072 Response regulator receiver domain KD35_06655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_06680 PF01906 Putative heavy-metal-binding KD35_06695 PF00107 Zinc-binding dehydrogenase KD35_06695 PF08240 Alcohol dehydrogenase GroES-like domain KD35_06700 PF11121 Protein of unknown function (DUF2639) KD35_06715 PF00149 Calcineurin-like phosphoesterase KD35_06720 PF13514 AAA domain KD35_06725 PF12323 Helix-turn-helix domain KD35_06725 PF07282 Putative transposase DNA-binding domain KD35_06725 PF01385 Probable transposase KD35_06735 PF01336 OB-fold nucleic acid binding domain KD35_06735 PF01966 HD domain KD35_06740 PF00440 Bacterial regulatory proteins, tetR family KD35_06745 PF07690 Major Facilitator Superfamily KD35_06750 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KD35_06755 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KD35_06760 PF18801 response regulator aspartate phosphatase H, N terminal KD35_06765 PF08386 TAP-like protein KD35_06765 PF00561 alpha/beta hydrolase fold KD35_06785 PF04309 Glycerol-3-phosphate responsive antiterminator KD35_06790 PF00230 Major intrinsic protein KD35_06795 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KD35_06795 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KD35_06800 PF01266 FAD dependent oxidoreductase KD35_06800 PF16901 C-terminal domain of alpha-glycerophosphate oxidase KD35_06815 PF08281 Sigma-70, region 4 KD35_06815 PF04542 Sigma-70 region 2 KD35_06840 PF07690 Major Facilitator Superfamily KD35_06845 PF07690 Major Facilitator Superfamily KD35_06855 PF13538 UvrD-like helicase C-terminal domain KD35_06880 PF01047 MarR family KD35_06885 PF12732 YtxH-like protein KD35_06890 PF01230 HIT domain KD35_06895 PF00005 ABC transporter KD35_06900 PF05975 Bacterial ABC transporter protein EcsB KD35_06905 PF12787 EcsC protein family KD35_06910 PF17934 Tetracyclin repressor-like, C-terminal domain KD35_06910 PF00440 Bacterial regulatory proteins, tetR family KD35_06920 PF03703 Bacterial PH domain KD35_06930 PF03703 Bacterial PH domain KD35_06975 PF03703 Bacterial PH domain KD35_06980 PF03703 Bacterial PH domain KD35_06985 PF03992 Antibiotic biosynthesis monooxygenase KD35_06990 PF00905 Penicillin binding protein transpeptidase domain KD35_06990 PF00912 Transglycosylase KD35_06995 PF01208 Uroporphyrinogen decarboxylase (URO-D) KD35_07030 PF03965 Penicillinase repressor KD35_07040 PF17932 Tetracyclin repressor-like, C-terminal domain KD35_07040 PF00440 Bacterial regulatory proteins, tetR family KD35_07070 PF00356 Bacterial regulatory proteins, lacI family KD35_07075 PF14149 YhfH-like protein KD35_07080 PF12706 Beta-lactamase superfamily domain KD35_07085 PF10437 Bacterial lipoate protein ligase C-terminus KD35_07085 PF03099 Biotin/lipoate A/B protein ligase family KD35_07095 PF13193 AMP-binding enzyme C-terminal domain KD35_07095 PF00501 AMP-binding enzyme KD35_07105 PF01520 N-acetylmuramoyl-L-alanine amidase KD35_07105 PF00395 S-layer homology domain KD35_07110 PF05593 RHS Repeat KD35_07125 PF05593 RHS Repeat KD35_07160 PF02129 X-Pro dipeptidyl-peptidase (S15 family) KD35_07170 PF00149 Calcineurin-like phosphoesterase KD35_07175 PF01966 HD domain KD35_07185 PF08281 Sigma-70, region 4 KD35_07185 PF04542 Sigma-70 region 2 KD35_07190 PF06445 GyrI-like small molecule binding domain KD35_07190 PF12833 Helix-turn-helix domain KD35_07205 PF00512 His Kinase A (phospho-acceptor) domain KD35_07205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_07210 PF00486 Transcriptional regulatory protein, C terminal KD35_07210 PF00072 Response regulator receiver domain KD35_07235 PF01435 Peptidase family M48 KD35_07235 PF16491 CAAX prenyl protease N-terminal, five membrane helices KD35_07240 PF00672 HAMP domain KD35_07240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KD35_07240 PF02743 Cache domain KD35_07245 PF00892 EamA-like transporter family KD35_07250 PF03424 Carbohydrate binding domain (family 17/28) KD35_07250 PF00395 S-layer homology domain KD35_07250 PF00150 Cellulase (glycosyl hydrolase family 5) KD35_07260 PF00395 S-layer homology domain KD35_07265 PF01274 Malate synthase KD35_07270 PF00463 Isocitrate lyase family KD35_07280 PF00313 'Cold-shock' DNA-binding domain KD35_07295 PF06338 ComK protein KD35_07300 PF09335 SNARE associated Golgi protein KD35_07305 PF10502 Signal peptidase, peptidase S26 KD35_07310 PF12705 PD-(D/E)XK nuclease superfamily KD35_07310 PF13361 UvrD-like helicase C-terminal domain KD35_07315 PF12705 PD-(D/E)XK nuclease superfamily KD35_07315 PF13361 UvrD-like helicase C-terminal domain KD35_07315 PF00580 UvrD/REP helicase N-terminal domain KD35_07325 PF10676 Spore germination protein gerPA/gerPF KD35_07330 PF10970 Spore germination protein GerPE KD35_07340 PF10737 Spore germination protein GerPC KD35_07345 PF10803 Spore germination GerPB KD35_07350 PF10676 Spore germination protein gerPA/gerPF KD35_07355 PF09388 Spo0E like sporulation regulatory protein KD35_07360 PF01557 Fumarylacetoacetate (FAA) hydrolase family KD35_07370 PF00202 Aminotransferase class-III KD35_07375 PF07457 Protein of unknown function (DUF1516) KD35_07385 PF00733 Asparagine synthase KD35_07385 PF13537 Glutamine amidotransferase domain KD35_07395 PF00199 Catalase KD35_07395 PF06628 Catalase-related immune-responsive KD35_07400 PF00909 Ammonium Transporter Family KD35_07410 PF00128 Alpha amylase, catalytic domain KD35_07420 PF04461 Protein of unknown function (DUF520) KD35_07425 PF13509 S1 domain KD35_07425 PF17783 CvfB-like winged helix domain KD35_07435 PF00639 PPIC-type PPIASE domain KD35_07445 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KD35_07445 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KD35_07450 PF12758 Protein of unknown function (DUF3813) KD35_07470 PF14168 YjzC-like protein KD35_07475 PF02861 Clp amino terminal domain, pathogenicity island component KD35_07475 PF07724 AAA domain (Cdc48 subfamily) KD35_07475 PF10431 C-terminal, D2-small domain, of ClpB protein KD35_07475 PF17871 AAA lid domain KD35_07475 PF00004 ATPase family associated with various cellular activities (AAA) KD35_07495 PF10815 ComZ KD35_07500 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KD35_07500 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KD35_07505 PF02801 Beta-ketoacyl synthase, C-terminal domain KD35_07505 PF00109 Beta-ketoacyl synthase, N-terminal domain KD35_07510 PF10026 Predicted Zn-dependent protease (DUF2268) KD35_07515 PF12227 Protein of unknown function (DUF3603) KD35_07520 PF00579 tRNA synthetases class I (W and Y) KD35_07530 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KD35_07535 PF00528 Binding-protein-dependent transport system inner membrane component KD35_07540 PF00528 Binding-protein-dependent transport system inner membrane component KD35_07540 PF12911 N-terminal TM domain of oligopeptide transport permease C KD35_07545 PF00005 ABC transporter KD35_07545 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KD35_07550 PF00005 ABC transporter KD35_07550 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KD35_07555 PF01554 MatE KD35_07560 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KD35_07575 PF03960 ArsC family KD35_07580 PF03741 Integral membrane protein TerC family KD35_07585 PF05389 Negative regulator of genetic competence (MecA) KD35_07590 PF13396 Phospholipase_D-nuclease N-terminal KD35_07590 PF13091 PLD-like domain KD35_07600 PF01432 Peptidase family M3 KD35_07600 PF08439 Oligopeptidase F KD35_07615 PF01152 Bacterial-like globin KD35_07620 PF01928 CYTH domain KD35_07630 PF04607 Region found in RelA / SpoT proteins KD35_07635 PF01513 ATP-NAD kinase KD35_07640 PF00849 RNA pseudouridylate synthase KD35_07650 PF00149 Calcineurin-like phosphoesterase KD35_07655 PF01098 Cell cycle protein KD35_07660 PF00535 Glycosyl transferase family 2 KD35_07665 PF08241 Methyltransferase domain KD35_07670 PF05711 Macrocin-O-methyltransferase (TylF) KD35_07680 PF00535 Glycosyl transferase family 2 KD35_07680 PF13181 Tetratricopeptide repeat KD35_07700 PF00483 Nucleotidyl transferase KD35_07705 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase KD35_07710 PF16363 GDP-mannose 4,6 dehydratase KD35_07715 PF04321 RmlD substrate binding domain KD35_07735 PF07098 Protein of unknown function (DUF1360) KD35_07755 PF00580 UvrD/REP helicase N-terminal domain KD35_07755 PF13361 UvrD-like helicase C-terminal domain KD35_07760 PF13673 Acetyltransferase (GNAT) domain KD35_07770 PF00756 Putative esterase KD35_07785 PF02368 Bacterial Ig-like domain (group 2) KD35_07790 PF00474 Sodium:solute symporter family KD35_07805 PF02885 Glycosyl transferase family, helical bundle domain KD35_07805 PF00591 Glycosyl transferase family, a/b domain KD35_07805 PF00117 Glutamine amidotransferase class-I KD35_07810 PF00591 Glycosyl transferase family, a/b domain KD35_07810 PF02885 Glycosyl transferase family, helical bundle domain KD35_07815 PF00218 Indole-3-glycerol phosphate synthase KD35_07820 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase KD35_07825 PF00291 Pyridoxal-phosphate dependent enzyme KD35_07830 PF00290 Tryptophan synthase alpha chain KD35_07840 PF02652 L-lactate permease KD35_07845 PF10042 Uncharacterized conserved protein (DUF2278) KD35_07865 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KD35_07865 PF07992 Pyridine nucleotide-disulphide oxidoreductase KD35_07895 PF02817 e3 binding domain KD35_07895 PF00364 Biotin-requiring enzyme KD35_07895 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KD35_07900 PF02779 Transketolase, pyrimidine binding domain KD35_07900 PF16870 2-oxoglutarate dehydrogenase C-terminal KD35_07900 PF00676 Dehydrogenase E1 component KD35_07905 PF01381 Helix-turn-helix KD35_07965 PF13649 Methyltransferase domain KD35_07985 PF08671 Anti-repressor SinI KD35_07985 PF01381 Helix-turn-helix KD35_07995 PF05547 Immune inhibitor A peptidase M6 KD35_08000 PF00171 Aldehyde dehydrogenase family KD35_08005 PF00005 ABC transporter KD35_08005 PF08402 TOBE domain KD35_08010 PF00528 Binding-protein-dependent transport system inner membrane component KD35_08015 PF00528 Binding-protein-dependent transport system inner membrane component KD35_08020 PF13416 Bacterial extracellular solute-binding protein KD35_08030 PF03176 MMPL family KD35_08040 PF00849 RNA pseudouridylate synthase KD35_08040 PF01479 S4 domain KD35_08050 PF00188 Cysteine-rich secretory protein family KD35_08055 PF02754 Cysteine-rich domain KD35_08055 PF13183 4Fe-4S dicluster domain KD35_08060 PF01565 FAD binding domain KD35_08060 PF02913 FAD linked oxidases, C-terminal domain KD35_08065 PF05651 Putative sugar diacid recognition KD35_08065 PF13556 PucR C-terminal helix-turn-helix domain KD35_08065 PF17853 GGDEF-like domain KD35_08075 PF00072 Response regulator receiver domain KD35_08075 PF00486 Transcriptional regulatory protein, C terminal KD35_08080 PF00672 HAMP domain KD35_08080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_08080 PF00512 His Kinase A (phospho-acceptor) domain KD35_08080 PF00989 PAS fold KD35_08080 PF18698 Histidine kinase sensor domain KD35_08085 PF07729 FCD domain KD35_08085 PF00392 Bacterial regulatory proteins, gntR family KD35_08090 PF02754 Cysteine-rich domain KD35_08095 PF13183 4Fe-4S dicluster domain KD35_08095 PF02589 LUD domain KD35_08095 PF11870 Domain of unknown function (DUF3390) KD35_08100 PF02589 LUD domain KD35_08105 PF01478 Type IV leader peptidase family KD35_08105 PF06750 Bacterial Peptidase A24 N-terminal domain KD35_08115 PF01226 Formate/nitrite transporter KD35_08120 PF03741 Integral membrane protein TerC family KD35_08125 PF02386 Cation transport protein KD35_08130 PF00269 Small, acid-soluble spore proteins, alpha/beta type KD35_08135 PF01575 MaoC like domain KD35_08160 PF00561 alpha/beta hydrolase fold KD35_08170 PF02386 Cation transport protein KD35_08195 PF00528 Binding-protein-dependent transport system inner membrane component KD35_08200 PF13419 Haloacid dehalogenase-like hydrolase KD35_08205 PF00266 Aminotransferase class-V KD35_08215 PF08220 DeoR-like helix-turn-helix domain KD35_08215 PF00455 DeoR C terminal sensor domain KD35_08240 PF04748 Divergent polysaccharide deacetylase KD35_08245 PF09388 Spo0E like sporulation regulatory protein KD35_08250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_08250 PF00512 His Kinase A (phospho-acceptor) domain KD35_08250 PF02743 Cache domain KD35_08255 PF01047 MarR family KD35_08265 PF12867 DinB superfamily KD35_08275 PF00989 PAS fold KD35_08275 PF13188 PAS domain KD35_08275 PF13426 PAS domain KD35_08275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_08275 PF00512 His Kinase A (phospho-acceptor) domain KD35_08280 PF06508 Queuosine biosynthesis protein QueC KD35_08285 PF01242 6-pyruvoyl tetrahydropterin synthase KD35_08290 PF04055 Radical SAM superfamily KD35_08295 PF14489 QueF-like protein KD35_08300 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) KD35_08335 PF07972 NrdI Flavodoxin like KD35_08355 PF00268 Ribonucleotide reductase, small chain KD35_08360 PF00392 Bacterial regulatory proteins, gntR family KD35_08365 PF00005 ABC transporter KD35_08375 PF00005 ABC transporter KD35_08395 PF01037 Lrp/AsnC ligand binding domain KD35_08405 PF00857 Isochorismatase family KD35_08415 PF02016 LD-carboxypeptidase N-terminal domain KD35_08415 PF17676 LD-carboxypeptidase C-terminal domain KD35_08420 PF03060 Nitronate monooxygenase KD35_08425 PF04914 DltD protein KD35_08430 PF00550 Phosphopantetheine attachment site KD35_08435 PF03062 MBOAT, membrane-bound O-acyltransferase family KD35_08440 PF13193 AMP-binding enzyme C-terminal domain KD35_08440 PF00501 AMP-binding enzyme KD35_08450 PF07687 Peptidase dimerisation domain KD35_08450 PF01546 Peptidase family M20/M25/M40 KD35_08460 PF00258 Flavodoxin KD35_08475 PF01636 Phosphotransferase enzyme family KD35_08495 PF01554 MatE KD35_08500 PF02673 Bacitracin resistance protein BacA KD35_08515 PF01047 MarR family KD35_08525 PF00375 Sodium:dicarboxylate symporter family KD35_08530 PF02386 Cation transport protein KD35_08540 PF09579 Sporulation protein YtfJ (Spore_YtfJ) KD35_08555 PF03698 Uncharacterised protein family (UPF0180) KD35_08570 PF01063 Amino-transferase class IV KD35_08575 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KD35_08575 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KD35_08575 PF00205 Thiamine pyrophosphate enzyme, central domain KD35_08580 PF10369 Small subunit of acetolactate synthase KD35_08580 PF01842 ACT domain KD35_08585 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain KD35_08585 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain KD35_08590 PF00682 HMGL-like KD35_08590 PF08502 LeuA allosteric (dimerisation) domain KD35_08595 PF00180 Isocitrate/isopropylmalate dehydrogenase KD35_08600 PF00330 Aconitase family (aconitate hydratase) KD35_08605 PF00694 Aconitase C-terminal domain KD35_08610 PF13393 Histidyl-tRNA synthetase KD35_08615 PF01634 ATP phosphoribosyltransferase KD35_08620 PF00815 Histidinol dehydrogenase KD35_08625 PF00475 Imidazoleglycerol-phosphate dehydratase KD35_08630 PF00117 Glutamine amidotransferase class-I KD35_08635 PF00977 Histidine biosynthesis protein KD35_08640 PF00977 Histidine biosynthesis protein KD35_08645 PF01502 Phosphoribosyl-AMP cyclohydrolase KD35_08650 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase KD35_08655 PF02811 PHP domain KD35_08665 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KD35_08665 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KD35_08670 PF01066 CDP-alcohol phosphatidyltransferase KD35_08675 PF00884 Sulfatase KD35_08685 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain KD35_08685 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain KD35_08695 PF01507 Phosphoadenosine phosphosulfate reductase family KD35_08700 PF01747 ATP-sulfurylase KD35_08700 PF14306 PUA-like domain KD35_08710 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KD35_08710 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KD35_08720 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KD35_08725 PF01903 CbiX KD35_08740 PF00209 Sodium:neurotransmitter symporter family KD35_08750 PF00375 Sodium:dicarboxylate symporter family KD35_08760 PF03553 Na+/H+ antiporter family KD35_08775 PF09922 Cell wall-active antibiotics response 4TMS YvqF KD35_08780 PF07730 Histidine kinase KD35_08780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_08780 PF00672 HAMP domain KD35_08785 PF00072 Response regulator receiver domain KD35_08785 PF00196 Bacterial regulatory proteins, luxR family KD35_08795 PF05525 Branched-chain amino acid transport protein KD35_08805 PF08241 Methyltransferase domain KD35_08830 PF00042 Globin KD35_08830 PF00970 Oxidoreductase FAD-binding domain KD35_08830 PF00175 Oxidoreductase NAD-binding domain KD35_08850 PF01925 Sulfite exporter TauE/SafE KD35_08855 PF01384 Phosphate transporter family KD35_08860 PF01865 Protein of unknown function DUF47 KD35_08865 PF00905 Penicillin binding protein transpeptidase domain KD35_08865 PF00912 Transglycosylase KD35_08880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_08880 PF00512 His Kinase A (phospho-acceptor) domain KD35_08880 PF00989 PAS fold KD35_08885 PF01904 Protein of unknown function DUF72 KD35_08895 PF00589 Phage integrase family KD35_08900 PF00989 PAS fold KD35_08900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_08900 PF00512 His Kinase A (phospho-acceptor) domain KD35_08900 PF16736 Single Cache-like KD35_08905 PF01048 Phosphorylase superfamily KD35_08920 PF09924 Uncharacterised conserved protein (DUF2156) KD35_08920 PF03706 Lysylphosphatidylglycerol synthase TM region KD35_08935 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KD35_08935 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KD35_08940 PF07943 Penicillin-binding protein 5, C-terminal domain KD35_08940 PF00768 D-alanyl-D-alanine carboxypeptidase KD35_08945 PF07670 Nucleoside recognition KD35_08950 PF07670 Nucleoside recognition KD35_08955 PF00849 RNA pseudouridylate synthase KD35_08955 PF01479 S4 domain KD35_08960 PF00578 AhpC/TSA family KD35_08965 PF05140 ResB-like family KD35_08970 PF01578 Cytochrome C assembly protein KD35_08975 PF00486 Transcriptional regulatory protein, C terminal KD35_08975 PF00072 Response regulator receiver domain KD35_08980 PF18698 Histidine kinase sensor domain KD35_08980 PF00672 HAMP domain KD35_08980 PF00989 PAS fold KD35_08980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_08980 PF00512 His Kinase A (phospho-acceptor) domain KD35_08985 PF01923 Cobalamin adenosyltransferase KD35_09000 PF12822 ECF transporter, substrate-specific component KD35_09010 PF14493 Helix-turn-helix domain KD35_09015 PF00271 Helicase conserved C-terminal domain KD35_09015 PF00270 DEAD/DEAH box helicase KD35_09020 PF02517 CPBP intramembrane metalloprotease KD35_09035 PF02607 B12 binding domain KD35_09035 PF02310 B12 binding domain KD35_09035 PF13411 MerR HTH family regulatory protein KD35_09040 PF05389 Negative regulator of genetic competence (MecA) KD35_09045 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KD35_09045 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain KD35_09070 PF00710 Asparaginase, N-terminal KD35_09070 PF17763 Glutaminase/Asparaginase C-terminal domain KD35_09080 PF02224 Cytidylate kinase KD35_09085 PF00575 S1 RNA binding domain KD35_09090 PF01070 FMN-dependent dehydrogenase KD35_09095 PF14140 YpzI-like protein KD35_09105 PF14045 YIEGIA protein KD35_09115 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal KD35_09115 PF01926 50S ribosome-binding GTPase KD35_09120 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KD35_09120 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus KD35_09130 PF10966 Protein of unknown function (DUF2768) KD35_09140 PF09547 Stage IV sporulation protein A (spore_IV_A) KD35_09145 PF00216 Bacterial DNA-binding protein KD35_09150 PF01227 GTP cyclohydrolase I KD35_09155 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 KD35_09160 PF01209 ubiE/COQ5 methyltransferase family KD35_09165 PF00348 Polyprenyl synthetase KD35_09170 PF00334 Nucleoside diphosphate kinase KD35_09175 PF01264 Chorismate synthase KD35_09180 PF01761 3-dehydroquinate synthase KD35_09185 PF00155 Aminotransferase class I and II KD35_09195 PF08864 UPF0302 domain KD35_09195 PF08858 IDEAL domain KD35_09200 PF10673 Protein of unknown function (DUF2487) KD35_09205 PF00355 Rieske [2Fe-2S] domain KD35_09210 PF00033 Cytochrome b/b6/petB KD35_09215 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KD35_09215 PF00032 Cytochrome b(C-terminal)/b6/petD KD35_09220 PF07187 Protein of unknown function (DUF1405) KD35_09230 PF09577 Sporulation protein YpjB (SpoYpjB) KD35_09235 PF04298 Putative neutral zinc metallopeptidase KD35_09245 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KD35_09245 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KD35_09250 PF03819 MazG nucleotide pyrophosphohydrolase domain KD35_09255 PF01113 Dihydrodipicolinate reductase, N-terminus KD35_09255 PF05173 Dihydrodipicolinate reductase, C-terminus KD35_09260 PF02142 MGS-like domain KD35_09265 PF02585 GlcNAc-PI de-N-acetylase KD35_09270 PF00534 Glycosyl transferases group 1 KD35_09270 PF13439 Glycosyltransferase Family 4 KD35_09275 PF12627 Probable RNA and SrmB- binding site of polymerase A KD35_09275 PF01743 Poly A polymerase head domain KD35_09275 PF13735 tRNA nucleotidyltransferase domain 2 putative KD35_09280 PF03099 Biotin/lipoate A/B protein ligase family KD35_09280 PF08279 HTH domain KD35_09280 PF02237 Biotin protein ligase C terminal domain KD35_09295 PF02548 Ketopantoate hydroxymethyltransferase KD35_09300 PF02569 Pantoate-beta-alanine ligase KD35_09305 PF02261 Aspartate decarboxylase KD35_09310 PF13307 Helicase C-terminal domain KD35_09310 PF04851 Type III restriction enzyme, res subunit KD35_09310 PF00929 Exonuclease KD35_09315 PF14084 Protein of unknown function (DUF4264) KD35_09325 PF00155 Aminotransferase class I and II KD35_09330 PF07261 Replication initiation and membrane attachment KD35_09335 PF10576 Iron-sulfur binding domain of endonuclease III KD35_09335 PF00730 HhH-GPD superfamily base excision DNA repair protein KD35_09335 PF00633 Helix-hairpin-helix motif KD35_09350 PF03838 Recombination protein U KD35_09355 PF10720 Protein of unknown function (DUF2515) KD35_09385 PF06908 YspA SLOG family KD35_09390 PF05103 DivIVA protein KD35_09395 PF01170 Putative RNA methylase family UPF0020 KD35_09395 PF02926 THUMP domain KD35_09405 PF13307 Helicase C-terminal domain KD35_09410 PF02074 Carboxypeptidase Taq (M32) metallopeptidase KD35_09420 PF01636 Phosphotransferase enzyme family KD35_09425 PF00557 Metallopeptidase family M24 KD35_09430 PF00156 Phosphoribosyl transferase domain KD35_09435 PF00860 Permease family KD35_09440 PF04235 Protein of unknown function (DUF418) KD35_09445 PF00350 Dynamin family KD35_09455 PF00583 Acetyltransferase (GNAT) family KD35_09460 PF10752 Protein of unknown function (DUF2533) KD35_09465 PF00581 Rhodanese-like domain KD35_09480 PF03738 Glutathionylspermidine synthase preATP-grasp KD35_09490 PF00689 Cation transporting ATPase, C-terminus KD35_09490 PF00690 Cation transporter/ATPase, N-terminus KD35_09495 PF01367 5'-3' exonuclease, C-terminal SAM fold KD35_09495 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KD35_09520 PF02397 Bacterial sugar transferase KD35_09535 PF00535 Glycosyl transferase family 2 KD35_09540 PF13439 Glycosyltransferase Family 4 KD35_09540 PF00534 Glycosyl transferases group 1 KD35_09555 PF18014 Acetyltransferase (GNAT) domain KD35_09555 PF13673 Acetyltransferase (GNAT) domain KD35_09575 PF13456 Reverse transcriptase-like KD35_09580 PF01263 Aldose 1-epimerase KD35_09605 PF00313 'Cold-shock' DNA-binding domain KD35_09615 PF01810 LysE type translocator KD35_09630 PF04341 Protein of unknown function, DUF485 KD35_09640 PF00202 Aminotransferase class-III KD35_09650 PF00999 Sodium/hydrogen exchanger family KD35_09655 PF17770 Ribonuclease J C-terminal domain KD35_09655 PF00753 Metallo-beta-lactamase superfamily KD35_09655 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain KD35_09660 PF06445 GyrI-like small molecule binding domain KD35_09660 PF13411 MerR HTH family regulatory protein KD35_09670 PF04239 Protein of unknown function (DUF421) KD35_09675 PF02698 DUF218 domain KD35_09685 PF00881 Nitroreductase family KD35_09730 PF17209 Hfq protein KD35_09740 PF01618 MotA/TolQ/ExbB proton channel family KD35_09745 PF13677 Membrane MotB of proton-channel complex MotA/MotB KD35_09745 PF00691 OmpA family KD35_09750 PF00072 Response regulator receiver domain KD35_09760 PF04509 CheC-like family KD35_09760 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term KD35_09775 PF03705 CheR methyltransferase, all-alpha domain KD35_09775 PF01739 CheR methyltransferase, SAM binding domain KD35_09795 PF00460 Flagella basal body rod protein KD35_09795 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KD35_09800 PF00700 Bacterial flagellin C-terminal helical region KD35_09800 PF00669 Bacterial flagellin N-terminal helical region KD35_09825 PF00460 Flagella basal body rod protein KD35_09830 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KD35_09830 PF00460 Flagella basal body rod protein KD35_09835 PF02049 Flagellar hook-basal body complex protein FliE KD35_09840 PF08345 Flagellar M-ring protein C-terminal KD35_09840 PF01514 Secretory protein of YscJ/FliF family KD35_09850 PF14841 FliG middle domain KD35_09850 PF14842 FliG N-terminal domain KD35_09850 PF01706 FliG C-terminal domain KD35_09860 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KD35_09860 PF02874 ATP synthase alpha/beta family, beta-barrel domain KD35_09860 PF18269 T3SS EscN ATPase C-terminal domain KD35_09885 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KD35_09885 PF07559 Flagellar basal body protein FlaE KD35_09885 PF00460 Flagella basal body rod protein KD35_09900 PF01584 CheW-like domain KD35_09900 PF00072 Response regulator receiver domain KD35_09905 PF12181 DNA binding domain of the motility gene repressor (MogR) KD35_09910 PF00535 Glycosyl transferase family 2 KD35_09940 PF00535 Glycosyl transferase family 2 KD35_09940 PF13181 Tetratricopeptide repeat KD35_09965 PF00669 Bacterial flagellin N-terminal helical region KD35_09965 PF00700 Bacterial flagellin C-terminal helical region KD35_09970 PF01464 Transglycosylase SLT domain KD35_09985 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term KD35_09985 PF04509 CheC-like family KD35_09995 PF00813 FliP family KD35_10000 PF01313 Bacterial export proteins, family 3 KD35_10010 PF01312 FlhB HrpN YscU SpaS Family KD35_10015 PF00771 FHIPEP family KD35_10020 PF00448 SRP54-type protein, GTPase domain KD35_10025 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KD35_10025 PF00460 Flagella basal body rod protein KD35_10030 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KD35_10030 PF01411 tRNA synthetases class II (A) KD35_10030 PF02272 DHHA1 domain KD35_10055 PF17932 Tetracyclin repressor-like, C-terminal domain KD35_10055 PF00440 Bacterial regulatory proteins, tetR family KD35_10060 PF17329 Family of unknown function (DUF5367) KD35_10075 PF03992 Antibiotic biosynthesis monooxygenase KD35_10080 PF08141 Small acid-soluble spore protein H family KD35_10105 PF00005 ABC transporter KD35_10105 PF08402 TOBE domain KD35_10115 PF00528 Binding-protein-dependent transport system inner membrane component KD35_10120 PF00753 Metallo-beta-lactamase superfamily KD35_10120 PF12706 Beta-lactamase superfamily domain KD35_10130 PF10787 Uncharacterised protein from bacillus cereus group KD35_10145 PF07943 Penicillin-binding protein 5, C-terminal domain KD35_10145 PF00768 D-alanyl-D-alanine carboxypeptidase KD35_10155 PF00300 Histidine phosphatase superfamily (branch 1) KD35_10195 PF00291 Pyridoxal-phosphate dependent enzyme KD35_10200 PF04286 Protein of unknown function (DUF445) KD35_10225 PF00072 Response regulator receiver domain KD35_10225 PF00196 Bacterial regulatory proteins, luxR family KD35_10230 PF13492 GAF domain KD35_10230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_10230 PF07730 Histidine kinase KD35_10230 PF13185 GAF domain KD35_10235 PF00005 ABC transporter KD35_10250 PF13091 PLD-like domain KD35_10255 PF00696 Amino acid kinase family KD35_10260 PF00375 Sodium:dicarboxylate symporter family KD35_10265 PF10415 Fumarase C C-terminus KD35_10265 PF00206 Lyase KD35_10270 PF03949 Malic enzyme, NAD binding domain KD35_10270 PF00390 Malic enzyme, N-terminal domain KD35_10275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_10280 PF00072 Response regulator receiver domain KD35_10280 PF08664 YcbB domain KD35_10285 PF00271 Helicase conserved C-terminal domain KD35_10285 PF04434 SWIM zinc finger KD35_10285 PF00176 SNF2 family N-terminal domain KD35_10305 PF03590 Aspartate-ammonia ligase KD35_10320 PF13840 ACT domain KD35_10320 PF00696 Amino acid kinase family KD35_10335 PF13761 Domain of unknown function (DUF4166) KD35_10340 PF14158 YndJ-like protein KD35_10345 PF00293 NUDIX domain KD35_10350 PF02368 Bacterial Ig-like domain (group 2) KD35_10350 PF13205 Bacterial Ig-like domain KD35_10350 PF00395 S-layer homology domain KD35_10360 PF07690 Major Facilitator Superfamily KD35_10375 PF02554 Carbon starvation protein CstA KD35_10380 PF03976 Polyphosphate kinase 2 (PPK2) KD35_10390 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KD35_10390 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KD35_10400 PF16360 GTP-binding GTPase Middle Region KD35_10400 PF13167 GTP-binding GTPase N-terminal KD35_10400 PF01926 50S ribosome-binding GTPase KD35_10410 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KD35_10415 PF07690 Major Facilitator Superfamily KD35_10420 PF00291 Pyridoxal-phosphate dependent enzyme KD35_10435 PF14667 Polysaccharide biosynthesis C-terminal domain KD35_10435 PF01943 Polysaccharide biosynthesis protein KD35_10440 PF00209 Sodium:neurotransmitter symporter family KD35_10445 PF00457 Glycosyl hydrolases family 11 KD35_10445 PF03422 Carbohydrate binding module (family 6) KD35_10445 PF01522 Polysaccharide deacetylase KD35_10455 PF04239 Protein of unknown function (DUF421) KD35_10470 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KD35_10470 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KD35_10485 PF01625 Peptide methionine sulfoxide reductase KD35_10495 PF01063 Amino-transferase class IV KD35_10500 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KD35_10500 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KD35_10500 PF00205 Thiamine pyrophosphate enzyme, central domain KD35_10505 PF10369 Small subunit of acetolactate synthase KD35_10510 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain KD35_10510 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain KD35_10515 PF00920 Dehydratase family KD35_10520 PF00291 Pyridoxal-phosphate dependent enzyme KD35_10520 PF00585 C-terminal regulatory domain of Threonine dehydratase KD35_10530 PF09587 Bacterial capsule synthesis protein PGA_cap KD35_10545 PF07690 Major Facilitator Superfamily KD35_10550 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase KD35_10560 PF00072 Response regulator receiver domain KD35_10560 PF04397 LytTr DNA-binding domain KD35_10565 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain KD35_10565 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain KD35_10580 PF01979 Amidohydrolase family KD35_10585 PF13026 Protein of unknown function (DUF3887) KD35_10585 PF12146 Serine aminopeptidase, S33 KD35_10590 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KD35_10615 PF13186 Iron-sulfur cluster-binding domain KD35_10615 PF04055 Radical SAM superfamily KD35_10620 PF13302 Acetyltransferase (GNAT) domain KD35_10625 PF00072 Response regulator receiver domain KD35_10625 PF00486 Transcriptional regulatory protein, C terminal KD35_10640 PF01566 Natural resistance-associated macrophage protein KD35_10655 PF08546 Ketopantoate reductase PanE/ApbA C terminal KD35_10655 PF02558 Ketopantoate reductase PanE/ApbA KD35_10675 PF05791 Bacillus haemolytic enterotoxin (HBL) KD35_10680 PF05791 Bacillus haemolytic enterotoxin (HBL) KD35_10690 PF04198 Putative sugar-binding domain KD35_10695 PF01791 DeoC/LacD family aldolase KD35_10700 PF07662 Na+ dependent nucleoside transporter C-terminus KD35_10700 PF01773 Na+ dependent nucleoside transporter N-terminus KD35_10705 PF02885 Glycosyl transferase family, helical bundle domain KD35_10705 PF00591 Glycosyl transferase family, a/b domain KD35_10705 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain KD35_10710 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KD35_10720 PF05979 Bacterial protein of unknown function (DUF896) KD35_10740 PF00557 Metallopeptidase family M24 KD35_10740 PF05195 Aminopeptidase P, N-terminal domain KD35_10745 PF07731 Multicopper oxidase KD35_10745 PF07732 Multicopper oxidase KD35_10750 PF01551 Peptidase family M23 KD35_10775 PF02525 Flavodoxin-like fold KD35_10790 PF13115 YtkA-like KD35_10790 PF04234 CopC domain KD35_10790 PF05425 Copper resistance protein D KD35_10795 PF07987 Domain of unkown function (DUF1775) KD35_10805 PF00892 EamA-like transporter family KD35_10810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KD35_10810 PF03466 LysR substrate binding domain KD35_10815 PF02082 Transcriptional regulator KD35_10820 PF01323 DSBA-like thioredoxin domain KD35_10825 PF00881 Nitroreductase family KD35_10835 PF01425 Amidase KD35_10840 PF01594 AI-2E family transporter KD35_10845 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KD35_10845 PF00056 lactate/malate dehydrogenase, NAD binding domain KD35_10850 PF01593 Flavin containing amine oxidoreductase KD35_10855 PF02492 CobW/HypB/UreG, nucleotide-binding domain KD35_10855 PF07683 Cobalamin synthesis protein cobW C-terminal domain KD35_10870 PF00501 AMP-binding enzyme KD35_10870 PF13193 AMP-binding enzyme C-terminal domain KD35_10875 PF01575 MaoC like domain KD35_10880 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KD35_10880 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KD35_10890 PF00005 ABC transporter KD35_10890 PF12399 Branched-chain amino acid ATP-binding cassette transporter KD35_10895 PF00005 ABC transporter KD35_10900 PF02653 Branched-chain amino acid transport system / permease component KD35_10910 PF03466 LysR substrate binding domain KD35_10910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KD35_10930 PF01047 MarR family KD35_10940 PF01654 Cytochrome bd terminal oxidase subunit I KD35_10945 PF02322 Cytochrome bd terminal oxidase subunit II KD35_10950 PF00005 ABC transporter KD35_10950 PF00664 ABC transporter transmembrane region KD35_10955 PF00005 ABC transporter KD35_10955 PF00664 ABC transporter transmembrane region KD35_10970 PF02016 LD-carboxypeptidase N-terminal domain KD35_10970 PF17676 LD-carboxypeptidase C-terminal domain KD35_10975 PF07943 Penicillin-binding protein 5, C-terminal domain KD35_10975 PF00768 D-alanyl-D-alanine carboxypeptidase KD35_10990 PF01476 LysM domain KD35_10990 PF00877 NlpC/P60 family KD35_11000 PF00664 ABC transporter transmembrane region KD35_11000 PF00005 ABC transporter KD35_11005 PF00664 ABC transporter transmembrane region KD35_11005 PF00005 ABC transporter KD35_11010 PF00486 Transcriptional regulatory protein, C terminal KD35_11010 PF00072 Response regulator receiver domain KD35_11015 PF16736 Single Cache-like KD35_11015 PF00989 PAS fold KD35_11015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_11015 PF00512 His Kinase A (phospho-acceptor) domain KD35_11025 PF00106 short chain dehydrogenase KD35_11035 PF04439 Streptomycin adenylyltransferase KD35_11040 PF01522 Polysaccharide deacetylase KD35_11040 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain KD35_11060 PF00742 Homoserine dehydrogenase KD35_11060 PF01842 ACT domain KD35_11060 PF03447 Homoserine dehydrogenase, NAD binding domain KD35_11065 PF00291 Pyridoxal-phosphate dependent enzyme KD35_11070 PF00288 GHMP kinases N terminal domain KD35_11070 PF08544 GHMP kinases C terminal KD35_11085 PF03816 Cell envelope-related transcriptional attenuator domain KD35_11095 PF00486 Transcriptional regulatory protein, C terminal KD35_11095 PF00072 Response regulator receiver domain KD35_11100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_11100 PF00512 His Kinase A (phospho-acceptor) domain KD35_11100 PF00989 PAS fold KD35_11100 PF16736 Single Cache-like KD35_11105 PF01522 Polysaccharide deacetylase KD35_11115 PF02308 MgtC family KD35_11120 PF00583 Acetyltransferase (GNAT) family KD35_11125 PF06276 Ferric iron reductase FhuF-like transporter KD35_11125 PF04183 IucA / IucC family KD35_11130 PF06276 Ferric iron reductase FhuF-like transporter KD35_11130 PF04183 IucA / IucC family KD35_11135 PF13193 AMP-binding enzyme C-terminal domain KD35_11135 PF00501 AMP-binding enzyme KD35_11150 PF01261 Xylose isomerase-like TIM barrel KD35_11155 PF00269 Small, acid-soluble spore proteins, alpha/beta type KD35_11165 PF01810 LysE type translocator KD35_11175 PF01734 Patatin-like phospholipase KD35_11200 PF00293 NUDIX domain KD35_11200 PF13344 Haloacid dehalogenase-like hydrolase KD35_11205 PF02540 NAD synthase KD35_11215 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin KD35_11215 PF18277 AbrB C-terminal domain KD35_11220 PF00082 Subtilase family KD35_11225 PF01022 Bacterial regulatory protein, arsR family KD35_11230 PF00248 Aldo/keto reductase family KD35_11235 PF07690 Major Facilitator Superfamily KD35_11255 PF03193 RsgA GTPase KD35_11260 PF00672 HAMP domain KD35_11260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KD35_11260 PF02743 Cache domain KD35_11285 PF00210 Ferritin-like domain KD35_11300 PF00296 Luciferase-like monooxygenase KD35_11310 PF01593 Flavin containing amine oxidoreductase KD35_11320 PF00248 Aldo/keto reductase family KD35_11325 PF07683 Cobalamin synthesis protein cobW C-terminal domain KD35_11325 PF02492 CobW/HypB/UreG, nucleotide-binding domain KD35_11330 PF00583 Acetyltransferase (GNAT) family KD35_11395 PF01297 Zinc-uptake complex component A periplasmic KD35_11395 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment KD35_11405 PF13460 NAD(P)H-binding KD35_11410 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KD35_11415 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KD35_11415 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KD35_11425 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KD35_11430 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KD35_11440 PF00300 Histidine phosphatase superfamily (branch 1) KD35_11450 PF08757 CotH kinase protein KD35_11455 PF00293 NUDIX domain KD35_11460 PF09335 SNARE associated Golgi protein KD35_11465 PF01943 Polysaccharide biosynthesis protein KD35_11465 PF14667 Polysaccharide biosynthesis C-terminal domain KD35_11475 PF03773 Predicted permease KD35_11480 PF09323 Domain of unknown function (DUF1980) KD35_11485 PF03061 Thioesterase superfamily KD35_11490 PF13091 PLD-like domain KD35_11490 PF13396 Phospholipase_D-nuclease N-terminal KD35_11505 PF13460 NAD(P)H-binding KD35_11510 PF04306 Protein of unknown function (DUF456) KD35_11515 PF03471 Transporter associated domain KD35_11515 PF01595 Cyclin M transmembrane N-terminal domain KD35_11515 PF00571 CBS domain KD35_11530 PF05525 Branched-chain amino acid transport protein KD35_11535 PF01588 Putative tRNA binding domain KD35_11555 PF07454 Stage II sporulation protein P (SpoIIP) KD35_11565 PF02557 D-alanyl-D-alanine carboxypeptidase KD35_11575 PF01425 Amidase KD35_11580 PF07690 Major Facilitator Superfamily KD35_11590 PF01145 SPFH domain / Band 7 family KD35_11595 PF00300 Histidine phosphatase superfamily (branch 1) KD35_11610 PF01168 Alanine racemase, N-terminal domain KD35_11610 PF00842 Alanine racemase, C-terminal domain KD35_11630 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase KD35_11635 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KD35_11635 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KD35_11640 PF00155 Aminotransferase class I and II KD35_11640 PF00392 Bacterial regulatory proteins, gntR family KD35_11665 PF00583 Acetyltransferase (GNAT) family KD35_11715 PF09579 Sporulation protein YtfJ (Spore_YtfJ) KD35_11740 PF01209 ubiE/COQ5 methyltransferase family KD35_11745 PF01268 Formate--tetrahydrofolate ligase KD35_11755 PF00271 Helicase conserved C-terminal domain KD35_11755 PF00270 DEAD/DEAH box helicase KD35_11760 PF01261 Xylose isomerase-like TIM barrel KD35_11765 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KD35_11775 PF00107 Zinc-binding dehydrogenase KD35_11775 PF08240 Alcohol dehydrogenase GroES-like domain KD35_11780 PF08281 Sigma-70, region 4 KD35_11780 PF04542 Sigma-70 region 2 KD35_11805 PF00255 Glutathione peroxidase KD35_11810 PF01841 Transglutaminase-like superfamily KD35_11810 PF13559 Domain of unknown function (DUF4129) KD35_11810 PF11992 Domain of unknown function (DUF3488) KD35_11815 PF01882 Protein of unknown function DUF58 KD35_11820 PF17863 AAA lid domain KD35_11820 PF07726 ATPase family associated with various cellular activities (AAA) KD35_11835 PF01568 Molydopterin dinucleotide binding domain KD35_11835 PF00384 Molybdopterin oxidoreductase KD35_11835 PF14710 Respiratory nitrate reductase alpha N-terminal KD35_11840 PF13247 4Fe-4S dicluster domain KD35_11840 PF14711 Respiratory nitrate reductase beta C-terminal KD35_11845 PF02613 Nitrate reductase delta subunit KD35_11850 PF02665 Nitrate reductase gamma subunit KD35_11855 PF00392 Bacterial regulatory proteins, gntR family KD35_11855 PF00155 Aminotransferase class I and II KD35_11860 PF00005 ABC transporter KD35_11870 PF00027 Cyclic nucleotide-binding domain KD35_11870 PF00325 Bacterial regulatory proteins, crp family KD35_11875 PF06463 Molybdenum Cofactor Synthesis C KD35_11875 PF04055 Radical SAM superfamily KD35_11880 PF00899 ThiF family KD35_11885 PF03453 MoeA N-terminal region (domain I and II) KD35_11885 PF03454 MoeA C-terminal region (domain IV) KD35_11885 PF00994 Probable molybdopterin binding domain KD35_11890 PF02391 MoaE protein KD35_11900 PF07690 Major Facilitator Superfamily KD35_11920 PF01903 CbiX KD35_11925 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KD35_11930 PF00355 Rieske [2Fe-2S] domain KD35_11935 PF18267 Rubredoxin NAD+ reductase C-terminal domain KD35_11935 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KD35_11935 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KD35_11935 PF04324 BFD-like [2Fe-2S] binding domain KD35_11935 PF07992 Pyridine nucleotide-disulphide oxidoreductase KD35_11940 PF04405 Domain of Unknown function (DUF542) KD35_11940 PF01814 Hemerythrin HHE cation binding domain KD35_11975 PF04232 Stage V sporulation protein S (SpoVS) KD35_11990 PF01510 N-acetylmuramoyl-L-alanine amidase KD35_12005 PF01966 HD domain KD35_12010 PF12848 ABC transporter KD35_12010 PF16326 ABC transporter C-terminal domain KD35_12010 PF00005 ABC transporter KD35_12025 PF00436 Single-strand binding protein family KD35_12030 PF00440 Bacterial regulatory proteins, tetR family KD35_12035 PF01494 FAD binding domain KD35_12040 PF01494 FAD binding domain KD35_12045 PF13769 Virulence factor KD35_12045 PF08712 Scaffold protein Nfu/NifU N terminal KD35_12055 PF06491 Disulphide isomerase KD35_12060 PF04445 Putative SAM-dependent methyltransferase KD35_12065 PF03485 Arginyl tRNA synthetase N terminal domain KD35_12065 PF05746 DALR anticodon binding domain KD35_12065 PF00750 tRNA synthetases class I (R) KD35_12090 PF00133 tRNA synthetases class I (I, L, M and V) KD35_12090 PF08264 Anticodon-binding domain of tRNA KD35_12105 PF01225 Mur ligase family, catalytic domain KD35_12105 PF02875 Mur ligase family, glutamate ligase domain KD35_12105 PF08245 Mur ligase middle domain KD35_12110 PF01336 OB-fold nucleic acid binding domain KD35_12110 PF00152 tRNA synthetases class II (D, K and N) KD35_12130 PF01580 FtsK/SpoIIIE family KD35_12130 PF12538 DNA transporter KD35_12225 PF02595 Glycerate kinase family KD35_12230 PF00939 Sodium:sulfate symporter transmembrane region KD35_12235 PF00486 Transcriptional regulatory protein, C terminal KD35_12235 PF00072 Response regulator receiver domain KD35_12240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_12240 PF00672 HAMP domain KD35_12240 PF00512 His Kinase A (phospho-acceptor) domain KD35_12255 PF00209 Sodium:neurotransmitter symporter family KD35_12270 PF10997 Alternate to MurJ KD35_12275 PF13419 Haloacid dehalogenase-like hydrolase KD35_12285 PF00465 Iron-containing alcohol dehydrogenase KD35_12290 PF01177 Asp/Glu/Hydantoin racemase KD35_12295 PF01980 tRNA-methyltransferase O KD35_12300 PF00583 Acetyltransferase (GNAT) family KD35_12315 PF00005 ABC transporter KD35_12320 PF05975 Bacterial ABC transporter protein EcsB KD35_12325 PF14005 YpjP-like protein KD35_12330 PF13419 Haloacid dehalogenase-like hydrolase KD35_12350 PF00144 Beta-lactamase KD35_12350 PF07930 D-aminopeptidase, domain B KD35_12355 PF00303 Thymidylate synthase KD35_12360 PF00186 Dihydrofolate reductase KD35_12365 PF03717 Penicillin-binding Protein dimerisation domain KD35_12365 PF00905 Penicillin binding protein transpeptidase domain KD35_12365 PF05223 NTF2-like N-terminal transpeptidase domain KD35_12370 PF02525 Flavodoxin-like fold KD35_12375 PF01553 Acyltransferase KD35_12380 PF03006 Haemolysin-III related KD35_12385 PF02416 mttA/Hcf106 family KD35_12390 PF00902 Sec-independent protein translocase protein (TatC) KD35_12400 PF02645 Uncharacterised protein, DegV family COG1307 KD35_12410 PF02630 SCO1/SenC KD35_12415 PF00011 Hsp20/alpha crystallin family KD35_12420 PF13537 Glutamine amidotransferase domain KD35_12420 PF00733 Asparagine synthase KD35_12440 PF01497 Periplasmic binding protein KD35_12445 PF01063 Amino-transferase class IV KD35_12450 PF00881 Nitroreductase family KD35_12475 PF00011 Hsp20/alpha crystallin family KD35_12480 PF00924 Mechanosensitive ion channel KD35_12485 PF07730 Histidine kinase KD35_12485 PF13185 GAF domain KD35_12490 PF00072 Response regulator receiver domain KD35_12490 PF00196 Bacterial regulatory proteins, luxR family KD35_12500 PF01418 Helix-turn-helix domain, rpiR family KD35_12500 PF01380 SIS domain KD35_12505 PF00107 Zinc-binding dehydrogenase KD35_12505 PF08240 Alcohol dehydrogenase GroES-like domain KD35_12535 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KD35_12535 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KD35_12540 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KD35_12540 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KD35_12555 PF03358 NADPH-dependent FMN reductase KD35_12570 PF00005 ABC transporter KD35_12570 PF00571 CBS domain KD35_12575 PF00528 Binding-protein-dependent transport system inner membrane component KD35_12580 PF13520 Amino acid permease KD35_12610 PF01595 Cyclin M transmembrane N-terminal domain KD35_12610 PF03471 Transporter associated domain KD35_12610 PF00571 CBS domain KD35_12615 PF00171 Aldehyde dehydrogenase family KD35_12620 PF07997 Protein of unknown function (DUF1694) KD35_12625 PF09385 Histidine kinase N terminal KD35_12635 PF00202 Aminotransferase class-III KD35_12640 PF01144 Coenzyme A transferase KD35_12645 PF01144 Coenzyme A transferase KD35_12650 PF01546 Peptidase family M20/M25/M40 KD35_12650 PF07687 Peptidase dimerisation domain KD35_12655 PF00583 Acetyltransferase (GNAT) family KD35_12660 PF02954 Bacterial regulatory protein, Fis family KD35_12660 PF13426 PAS domain KD35_12660 PF00158 Sigma-54 interaction domain KD35_12665 PF12544 Lysine-2,3-aminomutase KD35_12670 PF14122 YokU-like protein, putative antitoxin KD35_12675 PF06855 YozE SAM-like fold KD35_12690 PF14162 YozD-like protein KD35_12705 PF07070 SpoOM protein KD35_12710 PF01569 PAP2 superfamily KD35_12715 PF01545 Cation efflux family KD35_12715 PF16916 Dimerisation domain of Zinc Transporter KD35_12720 PF00085 Thioredoxin KD35_12735 PF14436 Bacterial EndoU nuclease KD35_12735 PF04740 LXG domain of WXG superfamily KD35_12740 PF03424 Carbohydrate binding domain (family 17/28) KD35_12740 PF00150 Cellulase (glycosyl hydrolase family 5) KD35_12740 PF00395 S-layer homology domain KD35_12750 PF04471 Restriction endonuclease KD35_12860 PF10676 Spore germination protein gerPA/gerPF KD35_12880 PF00905 Penicillin binding protein transpeptidase domain KD35_12880 PF00912 Transglycosylase KD35_12885 PF07690 Major Facilitator Superfamily KD35_12890 PF01521 Iron-sulphur cluster biosynthesis KD35_12895 PF00285 Citrate synthase, C-terminal domain KD35_12900 PF03972 MmgE/PrpD family KD35_12910 PF02770 Acyl-CoA dehydrogenase, middle domain KD35_12910 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KD35_12910 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KD35_12915 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KD35_12915 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KD35_12920 PF00171 Aldehyde dehydrogenase family KD35_12925 PF01810 LysE type translocator KD35_12930 PF00378 Enoyl-CoA hydratase/isomerase KD35_12940 PF10763 Protein of unknown function (DUF2584) KD35_12945 PF12320 Type 5 capsule protein repressor C-terminal domain KD35_12945 PF00149 Calcineurin-like phosphoesterase KD35_12950 PF13476 AAA domain KD35_12965 PF01022 Bacterial regulatory protein, arsR family KD35_12980 PF07690 Major Facilitator Superfamily KD35_12985 PF00106 short chain dehydrogenase KD35_12990 PF00425 chorismate binding enzyme KD35_12995 PF13193 AMP-binding enzyme C-terminal domain KD35_12995 PF00501 AMP-binding enzyme KD35_13000 PF00550 Phosphopantetheine attachment site KD35_13000 PF00857 Isochorismatase family KD35_13005 PF00501 AMP-binding enzyme KD35_13005 PF13193 AMP-binding enzyme C-terminal domain KD35_13005 PF00975 Thioesterase domain KD35_13005 PF00550 Phosphopantetheine attachment site KD35_13005 PF00668 Condensation domain KD35_13010 PF03621 MbtH-like protein KD35_13015 PF07690 Major Facilitator Superfamily KD35_13030 PF00216 Bacterial DNA-binding protein KD35_13040 PF05163 DinB family KD35_13045 PF00082 Subtilase family KD35_13050 PF01235 Sodium:alanine symporter family KD35_13070 PF16291 Domain of unknown function (DUF4937 KD35_13075 PF01479 S4 domain KD35_13075 PF00849 RNA pseudouridylate synthase KD35_13080 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KD35_13080 PF02824 TGS domain KD35_13080 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KD35_13080 PF03129 Anticodon binding domain KD35_13095 PF12146 Serine aminopeptidase, S33 KD35_13100 PF07690 Major Facilitator Superfamily KD35_13120 PF13649 Methyltransferase domain KD35_13165 PF00753 Metallo-beta-lactamase superfamily KD35_13165 PF16123 Hydroxyacylglutathione hydrolase C-terminus KD35_13175 PF03176 MMPL family KD35_13185 PF00302 Chloramphenicol acetyltransferase KD35_13200 PF00583 Acetyltransferase (GNAT) family KD35_13240 PF13302 Acetyltransferase (GNAT) domain KD35_13250 PF00313 'Cold-shock' DNA-binding domain KD35_13315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KD35_13315 PF03466 LysR substrate binding domain KD35_13320 PF02774 Semialdehyde dehydrogenase, dimerisation domain KD35_13320 PF01118 Semialdehyde dehydrogenase, NAD binding domain KD35_13335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KD35_13335 PF03466 LysR substrate binding domain KD35_13340 PF03473 MOSC domain KD35_13340 PF03475 3-alpha domain KD35_13355 PF00005 ABC transporter KD35_13355 PF00664 ABC transporter transmembrane region KD35_13360 PF00664 ABC transporter transmembrane region KD35_13360 PF00005 ABC transporter KD35_13375 PF01810 LysE type translocator KD35_13380 PF07883 Cupin domain KD35_13380 PF01381 Helix-turn-helix KD35_13405 PF00890 FAD binding domain KD35_13410 PF04542 Sigma-70 region 2 KD35_13410 PF12680 SnoaL-like domain KD35_13410 PF08281 Sigma-70, region 4 KD35_13435 PF02638 Glycosyl hydrolase-like 10 KD35_13445 PF02378 Phosphotransferase system, EIIC KD35_13455 PF03702 Anhydro-N-acetylmuramic acid kinase KD35_13460 PF01869 BadF/BadG/BcrA/BcrD ATPase family KD35_13465 PF02660 Glycerol-3-phosphate acyltransferase KD35_13470 PF00266 Aminotransferase class-V KD35_13475 PF00291 Pyridoxal-phosphate dependent enzyme KD35_13490 PF00753 Metallo-beta-lactamase superfamily KD35_13490 PF16123 Hydroxyacylglutathione hydrolase C-terminus KD35_13505 PF00270 DEAD/DEAH box helicase KD35_13505 PF00271 Helicase conserved C-terminal domain KD35_13520 PF17932 Tetracyclin repressor-like, C-terminal domain KD35_13520 PF00440 Bacterial regulatory proteins, tetR family KD35_13535 PF12704 MacB-like periplasmic core domain KD35_13535 PF00005 ABC transporter KD35_13535 PF02687 FtsX-like permease family KD35_13540 PF03848 Tellurite resistance protein TehB KD35_13540 PF09313 Domain of unknown function (DUF1971) KD35_13550 PF08241 Methyltransferase domain KD35_13555 PF00205 Thiamine pyrophosphate enzyme, central domain KD35_13555 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KD35_13555 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KD35_13560 PF12802 MarR family KD35_13565 PF00300 Histidine phosphatase superfamily (branch 1) KD35_13570 PF14171 Toxin SpoIISA, type II toxin-antitoxin system KD35_13600 PF01546 Peptidase family M20/M25/M40 KD35_13600 PF07687 Peptidase dimerisation domain KD35_13615 PF08281 Sigma-70, region 4 KD35_13615 PF04542 Sigma-70 region 2 KD35_13625 PF00905 Penicillin binding protein transpeptidase domain KD35_13625 PF03717 Penicillin-binding Protein dimerisation domain KD35_13640 PF01569 PAP2 superfamily KD35_13645 PF00356 Bacterial regulatory proteins, lacI family KD35_13650 PF07690 Major Facilitator Superfamily KD35_13655 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KD35_13655 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KD35_13660 PF00294 pfkB family carbohydrate kinase KD35_13665 PF00171 Aldehyde dehydrogenase family KD35_13670 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KD35_13670 PF00205 Thiamine pyrophosphate enzyme, central domain KD35_13670 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KD35_13675 PF01261 Xylose isomerase-like TIM barrel KD35_13680 PF01116 Fructose-bisphosphate aldolase class-II KD35_13685 PF04962 KduI/IolB family KD35_13700 PF02872 5'-nucleotidase, C-terminal domain KD35_13700 PF00149 Calcineurin-like phosphoesterase KD35_13715 PF18801 response regulator aspartate phosphatase H, N terminal KD35_13720 PF01381 Helix-turn-helix KD35_13735 PF02557 D-alanyl-D-alanine carboxypeptidase KD35_13745 PF01520 N-acetylmuramoyl-L-alanine amidase KD35_13745 PF00395 S-layer homology domain KD35_13755 PF00440 Bacterial regulatory proteins, tetR family KD35_13770 PF00563 EAL domain KD35_13770 PF00990 Diguanylate cyclase, GGDEF domain KD35_13770 PF03707 Bacterial signalling protein N terminal repeat KD35_13775 PF13302 Acetyltransferase (GNAT) domain KD35_13785 PF07992 Pyridine nucleotide-disulphide oxidoreductase KD35_13790 PF00581 Rhodanese-like domain KD35_13805 PF00005 ABC transporter KD35_13815 PF00440 Bacterial regulatory proteins, tetR family KD35_13815 PF08359 YsiA-like protein, C-terminal region KD35_13830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KD35_13830 PF02770 Acyl-CoA dehydrogenase, middle domain KD35_13830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KD35_13835 PF00289 Biotin carboxylase, N-terminal domain KD35_13835 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KD35_13835 PF02785 Biotin carboxylase C-terminal domain KD35_13840 PF00364 Biotin-requiring enzyme KD35_13845 PF00682 HMGL-like KD35_13850 PF00378 Enoyl-CoA hydratase/isomerase KD35_13855 PF01039 Carboxyl transferase domain KD35_13860 PF16177 Acetyl-coenzyme A synthetase N-terminus KD35_13860 PF00501 AMP-binding enzyme KD35_13860 PF13193 AMP-binding enzyme C-terminal domain KD35_13870 PF00583 Acetyltransferase (GNAT) family KD35_13875 PF00485 Phosphoribulokinase / Uridine kinase family KD35_13885 PF05163 DinB family KD35_13890 PF00768 D-alanyl-D-alanine carboxypeptidase KD35_13890 PF07943 Penicillin-binding protein 5, C-terminal domain KD35_13895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_13895 PF00512 His Kinase A (phospho-acceptor) domain KD35_13900 PF00486 Transcriptional regulatory protein, C terminal KD35_13900 PF00072 Response regulator receiver domain KD35_13905 PF01966 HD domain KD35_13910 PF13021 Domain of unknown function (DUF3885) KD35_13915 PF01048 Phosphorylase superfamily KD35_13955 PF17755 UvrA DNA-binding domain KD35_13955 PF17760 UvrA interaction domain KD35_13955 PF17755 UvrA DNA-binding domain KD35_13955 PF17760 UvrA interaction domain KD35_13970 PF00144 Beta-lactamase KD35_13975 PF09278 MerR, DNA binding KD35_13975 PF00376 MerR family regulatory protein KD35_13980 PF07690 Major Facilitator Superfamily KD35_14000 PF01636 Phosphotransferase enzyme family KD35_14005 PF12833 Helix-turn-helix domain KD35_14020 PF00155 Aminotransferase class I and II KD35_14020 PF00392 Bacterial regulatory proteins, gntR family KD35_14035 PF08240 Alcohol dehydrogenase GroES-like domain KD35_14035 PF00107 Zinc-binding dehydrogenase KD35_14050 PF02875 Mur ligase family, glutamate ligase domain KD35_14050 PF08245 Mur ligase middle domain KD35_14050 PF01225 Mur ligase family, catalytic domain KD35_14055 PF08245 Mur ligase middle domain KD35_14055 PF02875 Mur ligase family, glutamate ligase domain KD35_14055 PF01225 Mur ligase family, catalytic domain KD35_14070 PF07486 Cell Wall Hydrolase KD35_14080 PF00486 Transcriptional regulatory protein, C terminal KD35_14080 PF00072 Response regulator receiver domain KD35_14110 PF00005 ABC transporter KD35_14135 PF00742 Homoserine dehydrogenase KD35_14135 PF01842 ACT domain KD35_14135 PF03447 Homoserine dehydrogenase, NAD binding domain KD35_14140 PF00155 Aminotransferase class I and II KD35_14140 PF00392 Bacterial regulatory proteins, gntR family KD35_14145 PF01820 D-ala D-ala ligase N-terminus KD35_14145 PF07478 D-ala D-ala ligase C-terminus KD35_14150 PF03070 TENA/THI-4/PQQC family KD35_14225 PF00067 Cytochrome P450 KD35_14235 PF00132 Bacterial transferase hexapeptide (six repeats) KD35_14240 PF07561 Domain of Unknown Function (DUF1540) KD35_14250 PF00067 Cytochrome P450 KD35_14270 PF00989 PAS fold KD35_14270 PF00512 His Kinase A (phospho-acceptor) domain KD35_14270 PF13188 PAS domain KD35_14270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_14270 PF13426 PAS domain KD35_14280 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase KD35_14285 PF01177 Asp/Glu/Hydantoin racemase KD35_14290 PF07155 ECF-type riboflavin transporter, S component KD35_14295 PF00005 ABC transporter KD35_14295 PF12558 ATP-binding cassette cobalt transporter KD35_14305 PF00512 His Kinase A (phospho-acceptor) domain KD35_14305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_14320 PF00107 Zinc-binding dehydrogenase KD35_14320 PF08240 Alcohol dehydrogenase GroES-like domain KD35_14335 PF00144 Beta-lactamase KD35_14335 PF11954 Domain of unknown function (DUF3471) KD35_14370 PF01965 DJ-1/PfpI family KD35_14385 PF00144 Beta-lactamase KD35_14390 PF01609 Transposase DDE domain KD35_14400 PF07690 Major Facilitator Superfamily KD35_14415 PF03009 Glycerophosphoryl diester phosphodiesterase family KD35_14435 PF00892 EamA-like transporter family KD35_14440 PF01270 Glycosyl hydrolases family 8 KD35_14450 PF00293 NUDIX domain KD35_14470 PF07690 Major Facilitator Superfamily KD35_14485 PF09297 NADH pyrophosphatase zinc ribbon domain KD35_14485 PF00293 NUDIX domain KD35_14490 PF02768 DNA polymerase III beta subunit, C-terminal domain KD35_14490 PF00712 DNA polymerase III beta subunit, N-terminal domain KD35_14490 PF02767 DNA polymerase III beta subunit, central domain KD35_14495 PF00293 NUDIX domain KD35_14510 PF12706 Beta-lactamase superfamily domain KD35_14530 PF09234 Domain of unknown function (DUF1963) KD35_14560 PF01734 Patatin-like phospholipase KD35_14565 PF08000 Bacterial PH domain KD35_14575 PF12867 DinB superfamily KD35_14590 PF02673 Bacitracin resistance protein BacA KD35_14600 PF01541 GIY-YIG catalytic domain KD35_14640 PF01266 FAD dependent oxidoreductase KD35_14665 PF13419 Haloacid dehalogenase-like hydrolase KD35_14685 PF00282 Pyridoxal-dependent decarboxylase conserved domain KD35_14690 PF13193 AMP-binding enzyme C-terminal domain KD35_14690 PF00668 Condensation domain KD35_14690 PF00550 Phosphopantetheine attachment site KD35_14690 PF00501 AMP-binding enzyme KD35_14700 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KD35_14700 PF00128 Alpha amylase, catalytic domain KD35_14700 PF03714 Bacterial pullanase-associated domain KD35_14705 PF01447 Thermolysin metallopeptidase, catalytic domain KD35_14705 PF02868 Thermolysin metallopeptidase, alpha-helical domain KD35_14705 PF03413 Peptidase propeptide and YPEB domain KD35_14705 PF07504 Fungalysin/Thermolysin Propeptide Motif KD35_14725 PF00344 SecY translocase KD35_14730 PF08299 Bacterial dnaA protein helix-turn-helix KD35_14730 PF00308 Bacterial dnaA protein KD35_14730 PF11638 DnaA N-terminal domain KD35_14735 PF00892 EamA-like transporter family KD35_14740 PF00155 Aminotransferase class I and II KD35_14740 PF00392 Bacterial regulatory proteins, gntR family KD35_14745 PF00561 alpha/beta hydrolase fold KD35_14770 PF06081 Aromatic acid exporter family member 1 KD35_14785 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) KD35_14790 PF03413 Peptidase propeptide and YPEB domain KD35_14790 PF14620 YpeB sporulation KD35_14795 PF01471 Putative peptidoglycan binding domain KD35_14795 PF07486 Cell Wall Hydrolase KD35_14810 PF03301 Tryptophan 2,3-dioxygenase KD35_14815 PF04199 Putative cyclase KD35_14820 PF00266 Aminotransferase class-V KD35_14825 PF00440 Bacterial regulatory proteins, tetR family KD35_14825 PF08359 YsiA-like protein, C-terminal region KD35_14830 PF00293 NUDIX domain KD35_14830 PF13344 Haloacid dehalogenase-like hydrolase KD35_14855 PF01590 GAF domain KD35_14855 PF00158 Sigma-54 interaction domain KD35_14855 PF02954 Bacterial regulatory protein, Fis family KD35_14875 PF00455 DeoR C terminal sensor domain KD35_14875 PF08220 DeoR-like helix-turn-helix domain KD35_14890 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KD35_14890 PF00403 Heavy-metal-associated domain KD35_14890 PF07992 Pyridine nucleotide-disulphide oxidoreductase KD35_14895 PF02082 Transcriptional regulator KD35_14910 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KD35_14910 PF07992 Pyridine nucleotide-disulphide oxidoreductase KD35_14915 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KD35_14915 PF02817 e3 binding domain KD35_14915 PF00364 Biotin-requiring enzyme KD35_14920 PF02780 Transketolase, C-terminal domain KD35_14920 PF02779 Transketolase, pyrimidine binding domain KD35_14925 PF00676 Dehydrogenase E1 component KD35_14935 PF00106 short chain dehydrogenase KD35_14940 PF04229 GrpB protein KD35_14940 PF13673 Acetyltransferase (GNAT) domain KD35_14975 PF00528 Binding-protein-dependent transport system inner membrane component KD35_14980 PF00005 ABC transporter KD35_14980 PF00571 CBS domain KD35_14985 PF04069 Substrate binding domain of ABC-type glycine betaine transport system KD35_14990 PF00574 Clp protease KD35_15005 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) KD35_15010 PF13673 Acetyltransferase (GNAT) domain KD35_15015 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading KD35_15015 PF18416 N-acetylglucosamine binding protein domain 2 KD35_15030 PF10990 Protein of unknown function (DUF2809) KD35_15060 PF00753 Metallo-beta-lactamase superfamily KD35_15060 PF13567 Domain of unknown function (DUF4131) KD35_15060 PF03772 Competence protein KD35_15110 PF13538 UvrD-like helicase C-terminal domain KD35_15125 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like KD35_15130 PF00270 DEAD/DEAH box helicase KD35_15130 PF00271 Helicase conserved C-terminal domain KD35_15130 PF09382 RQC domain KD35_15130 PF16124 RecQ zinc-binding KD35_15130 PF00570 HRDC domain KD35_15180 PF01368 DHH family KD35_15180 PF02833 DHHA2 domain KD35_15185 PF18416 N-acetylglucosamine binding protein domain 2 KD35_15185 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading KD35_15195 PF02627 Carboxymuconolactone decarboxylase family KD35_15200 PF01235 Sodium:alanine symporter family KD35_15205 PF00171 Aldehyde dehydrogenase family KD35_15210 PF00701 Dihydrodipicolinate synthetase family KD35_15215 PF05544 Proline racemase KD35_15220 PF05544 Proline racemase KD35_15225 PF01266 FAD dependent oxidoreductase KD35_15230 PF02954 Bacterial regulatory protein, Fis family KD35_15230 PF00158 Sigma-54 interaction domain KD35_15230 PF13188 PAS domain KD35_15245 PF04324 BFD-like [2Fe-2S] binding domain KD35_15245 PF07992 Pyridine nucleotide-disulphide oxidoreductase KD35_15260 PF08876 Domain of unknown function (DUF1836) KD35_15265 PF09335 SNARE associated Golgi protein KD35_15280 PF04914 DltD protein KD35_15285 PF03352 Methyladenine glycosylase KD35_15285 PF00958 GMP synthase C terminal domain KD35_15285 PF13673 Acetyltransferase (GNAT) domain KD35_15285 PF00117 Glutamine amidotransferase class-I KD35_15285 PF13302 Acetyltransferase (GNAT) domain KD35_15290 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KD35_15295 PF00877 NlpC/P60 family KD35_15295 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain KD35_15300 PF13378 Enolase C-terminal domain-like KD35_15300 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KD35_15315 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KD35_15340 PF02129 X-Pro dipeptidyl-peptidase (S15 family) KD35_15340 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain KD35_15345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_15345 PF00512 His Kinase A (phospho-acceptor) domain KD35_15345 PF16736 Single Cache-like KD35_15345 PF00989 PAS fold KD35_15350 PF00486 Transcriptional regulatory protein, C terminal KD35_15350 PF00072 Response regulator receiver domain KD35_15370 PF01048 Phosphorylase superfamily KD35_15380 PF03808 Glycosyl transferase WecB/TagA/CpsF family KD35_15390 PF02645 Uncharacterised protein, DegV family COG1307 KD35_15410 PF07690 Major Facilitator Superfamily KD35_15420 PF04519 Polymer-forming cytoskeletal KD35_15425 PF13171 Protein of unknown function (DUF4004) KD35_15430 PF12793 Sugar transport-related sRNA regulator N-term KD35_15430 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KD35_15435 PF07690 Major Facilitator Superfamily KD35_15455 PF04226 Transglycosylase associated protein KD35_15460 PF01156 Inosine-uridine preferring nucleoside hydrolase KD35_15470 PF08241 Methyltransferase domain KD35_15505 PF00155 Aminotransferase class I and II KD35_15510 PF07977 FabA-like domain KD35_15515 PF03630 Fumble KD35_15535 PF00005 ABC transporter KD35_15585 PF01594 AI-2E family transporter KD35_15600 PF00296 Luciferase-like monooxygenase KD35_15605 PF00528 Binding-protein-dependent transport system inner membrane component KD35_15610 PF09084 NMT1/THI5 like KD35_15615 PF00005 ABC transporter KD35_15655 PF02522 Aminoglycoside 3-N-acetyltransferase KD35_15680 PF13536 Putative multidrug resistance efflux transporter KD35_15685 PF12867 DinB superfamily KD35_15705 PF08713 DNA alkylation repair enzyme KD35_15715 PF01522 Polysaccharide deacetylase KD35_15725 PF03741 Integral membrane protein TerC family KD35_15730 PF00884 Sulfatase KD35_15735 PF12848 ABC transporter KD35_15735 PF00005 ABC transporter KD35_15745 PF03176 MMPL family KD35_15750 PF03176 MMPL family KD35_15755 PF03176 MMPL family KD35_15760 PF16295 Tetracyclin repressor-like, C-terminal domain KD35_15760 PF00440 Bacterial regulatory proteins, tetR family KD35_15770 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KD35_15775 PF01842 ACT domain KD35_15775 PF02153 Prephenate dehydrogenase KD35_15780 PF00155 Aminotransferase class I and II KD35_15785 PF01264 Chorismate synthase KD35_15790 PF01817 Chorismate mutase type II KD35_15790 PF00793 DAHP synthetase I family KD35_15810 PF01636 Phosphotransferase enzyme family KD35_15825 PF01476 LysM domain KD35_15825 PF06725 3D domain KD35_15835 PF04542 Sigma-70 region 2 KD35_15835 PF08281 Sigma-70, region 4 KD35_15855 PF06039 Malate:quinone oxidoreductase (Mqo) KD35_15860 PF13407 Periplasmic binding protein domain KD35_15865 PF02653 Branched-chain amino acid transport system / permease component KD35_15870 PF02653 Branched-chain amino acid transport system / permease component KD35_15875 PF00005 ABC transporter KD35_15880 PF04198 Putative sugar-binding domain KD35_15880 PF00325 Bacterial regulatory proteins, crp family KD35_15895 PF01791 DeoC/LacD family aldolase KD35_15915 PF03992 Antibiotic biosynthesis monooxygenase KD35_15935 PF01773 Na+ dependent nucleoside transporter N-terminus KD35_15935 PF07662 Na+ dependent nucleoside transporter C-terminus KD35_15940 PF00171 Aldehyde dehydrogenase family KD35_15945 PF01472 PUA domain KD35_15945 PF00696 Amino acid kinase family KD35_15950 PF14748 Pyrroline-5-carboxylate reductase dimerisation KD35_15950 PF03807 NADP oxidoreductase coenzyme F420-dependent KD35_15955 PF01546 Peptidase family M20/M25/M40 KD35_15960 PF09339 IclR helix-turn-helix domain KD35_15960 PF01614 Bacterial transcriptional regulator KD35_15965 PF00324 Amino acid permease KD35_15970 PF01139 tRNA-splicing ligase RtcB KD35_15975 PF00487 Fatty acid desaturase KD35_15980 PF00245 Alkaline phosphatase KD35_15985 PF11188 Protein of unknown function (DUF2975) KD35_15990 PF13443 Cro/C1-type HTH DNA-binding domain KD35_16005 PF10086 YhfC intramembrane metalloprotease KD35_16015 PF00072 Response regulator receiver domain KD35_16015 PF04397 LytTr DNA-binding domain KD35_16025 PF13302 Acetyltransferase (GNAT) domain KD35_16030 PF12681 Glyoxalase-like domain KD35_16050 PF17863 AAA lid domain KD35_16050 PF07726 ATPase family associated with various cellular activities (AAA) KD35_16065 PF07690 Major Facilitator Superfamily KD35_16090 PF00535 Glycosyl transferase family 2 KD35_16100 PF00535 Glycosyl transferase family 2 KD35_16110 PF00202 Aminotransferase class-III KD35_16115 PF06628 Catalase-related immune-responsive KD35_16115 PF00199 Catalase KD35_16125 PF01979 Amidohydrolase family KD35_16125 PF13382 Adenine deaminase C-terminal domain KD35_16130 PF00144 Beta-lactamase KD35_16150 PF17863 AAA lid domain KD35_16150 PF07726 ATPase family associated with various cellular activities (AAA) KD35_16160 PF00881 Nitroreductase family KD35_16165 PF01047 MarR family KD35_16170 PF00009 Elongation factor Tu GTP binding domain KD35_16170 PF03764 Elongation factor G, domain IV KD35_16170 PF14492 Elongation Factor G, domain II KD35_16170 PF00679 Elongation factor G C-terminus KD35_16180 PF00293 NUDIX domain KD35_16195 PF00005 ABC transporter KD35_16200 PF00392 Bacterial regulatory proteins, gntR family KD35_16210 PF12704 MacB-like periplasmic core domain KD35_16210 PF02687 FtsX-like permease family KD35_16210 PF00005 ABC transporter KD35_16235 PF12833 Helix-turn-helix domain KD35_16240 PF00583 Acetyltransferase (GNAT) family KD35_16255 PF00892 EamA-like transporter family KD35_16260 PF00155 Aminotransferase class I and II KD35_16260 PF00392 Bacterial regulatory proteins, gntR family KD35_16265 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 KD35_16270 PF13031 Protein of unknown function (DUF3892) KD35_16280 PF00672 HAMP domain KD35_16280 PF00512 His Kinase A (phospho-acceptor) domain KD35_16285 PF00072 Response regulator receiver domain KD35_16285 PF00486 Transcriptional regulatory protein, C terminal KD35_16290 PF00561 alpha/beta hydrolase fold KD35_16320 PF01925 Sulfite exporter TauE/SafE KD35_16325 PF13302 Acetyltransferase (GNAT) domain KD35_16330 PF00324 Amino acid permease KD35_16340 PF08713 DNA alkylation repair enzyme KD35_16345 PF10898 Protein of unknown function (DUF2716) KD35_16375 PF10502 Signal peptidase, peptidase S26 KD35_16390 PF02146 Sir2 family KD35_16395 PF01470 Pyroglutamyl peptidase KD35_16415 PF03746 LamB/YcsF family KD35_16425 PF02682 Carboxyltransferase domain, subdomain C and D KD35_16430 PF09339 IclR helix-turn-helix domain KD35_16430 PF01614 Bacterial transcriptional regulator KD35_16435 PF10502 Signal peptidase, peptidase S26 KD35_16440 PF03932 CutC family KD35_16445 PF07454 Stage II sporulation protein P (SpoIIP) KD35_16460 PF02770 Acyl-CoA dehydrogenase, middle domain KD35_16460 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KD35_16460 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KD35_16495 PF02915 Rubrerythrin KD35_16505 PF00440 Bacterial regulatory proteins, tetR family KD35_16510 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain KD35_16510 PF00391 PEP-utilising enzyme, mobile domain KD35_16515 PF00753 Metallo-beta-lactamase superfamily KD35_16530 PF07875 Coat F domain KD35_16535 PF08892 YqcI/YcgG family KD35_16540 PF01810 LysE type translocator KD35_16555 PF00269 Small, acid-soluble spore proteins, alpha/beta type KD35_16560 PF10710 Protein of unknown function (DUF2512) KD35_16565 PF11553 Protein of unknown function (DUF3231) KD35_16570 PF00269 Small, acid-soluble spore proteins, alpha/beta type KD35_16575 PF00107 Zinc-binding dehydrogenase KD35_16575 PF13823 Alcohol dehydrogenase GroES-associated KD35_16575 PF08240 Alcohol dehydrogenase GroES-like domain KD35_16590 PF10415 Fumarase C C-terminus KD35_16590 PF00206 Lyase KD35_16595 PF17763 Glutaminase/Asparaginase C-terminal domain KD35_16595 PF00710 Asparaginase, N-terminal KD35_16600 PF01381 Helix-turn-helix KD35_16610 PF01541 GIY-YIG catalytic domain KD35_16610 PF12826 Helix-hairpin-helix motif KD35_16610 PF02151 UvrB/uvrC motif KD35_16610 PF08459 UvrC Helix-hairpin-helix N-terminal KD35_16615 PF13520 Amino acid permease KD35_16620 PF05525 Branched-chain amino acid transport protein KD35_16625 PF14748 Pyrroline-5-carboxylate reductase dimerisation KD35_16625 PF03807 NADP oxidoreductase coenzyme F420-dependent KD35_16630 PF13564 DoxX-like family KD35_16635 PF03949 Malic enzyme, NAD binding domain KD35_16635 PF00390 Malic enzyme, N-terminal domain KD35_16645 PF05504 Spore germination B3/ GerAC like, C-terminal KD35_16650 PF05504 Spore germination B3/ GerAC like, C-terminal KD35_16655 PF03845 Spore germination protein KD35_16660 PF03323 Bacillus/Clostridium GerA spore germination protein KD35_16665 PF08664 YcbB domain KD35_16665 PF00072 Response regulator receiver domain KD35_16675 PF04960 Glutaminase KD35_16680 PF01235 Sodium:alanine symporter family KD35_16705 PF17936 Bacterial Ig domain KD35_16705 PF00149 Calcineurin-like phosphoesterase KD35_16705 PF02872 5'-nucleotidase, C-terminal domain KD35_16710 PF00199 Catalase KD35_16710 PF06628 Catalase-related immune-responsive KD35_16715 PF00561 alpha/beta hydrolase fold KD35_16720 PF00857 Isochorismatase family KD35_16735 PF01979 Amidohydrolase family KD35_16745 PF03466 LysR substrate binding domain KD35_16745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KD35_16770 PF11181 Heat induced stress protein YflT KD35_16785 PF03073 TspO/MBR family KD35_16790 PF03441 FAD binding domain of DNA photolyase KD35_16790 PF00875 DNA photolyase KD35_16800 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) KD35_16805 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KD35_16805 PF00361 Proton-conducting membrane transporter KD35_16810 PF10057 Uncharacterized conserved protein (DUF2294) KD35_16820 PF01040 UbiA prenyltransferase family KD35_16825 PF00561 alpha/beta hydrolase fold KD35_16830 PF01297 Zinc-uptake complex component A periplasmic KD35_16835 PF00950 ABC 3 transport family KD35_16840 PF00005 ABC transporter KD35_16865 PF01451 Low molecular weight phosphotyrosine protein phosphatase KD35_16870 PF01758 Sodium Bile acid symporter family KD35_16875 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KD35_16880 PF01022 Bacterial regulatory protein, arsR family KD35_16895 PF00012 Hsp70 protein KD35_16910 PF01037 Lrp/AsnC ligand binding domain KD35_16925 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KD35_16935 PF01609 Transposase DDE domain KD35_16950 PF12833 Helix-turn-helix domain KD35_16950 PF02805 Metal binding domain of Ada KD35_16960 PF00144 Beta-lactamase KD35_16965 PF01609 Transposase DDE domain KD35_16980 PF12802 MarR family KD35_16985 PF00067 Cytochrome P450 KD35_16985 PF00175 Oxidoreductase NAD-binding domain KD35_16985 PF00258 Flavodoxin KD35_16985 PF00667 FAD binding domain KD35_16995 PF07690 Major Facilitator Superfamily KD35_17020 PF00072 Response regulator receiver domain KD35_17020 PF00486 Transcriptional regulatory protein, C terminal KD35_17025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_17025 PF00512 His Kinase A (phospho-acceptor) domain KD35_17025 PF00672 HAMP domain KD35_17055 PF00291 Pyridoxal-phosphate dependent enzyme KD35_17080 PF01381 Helix-turn-helix KD35_17095 PF00753 Metallo-beta-lactamase superfamily KD35_17100 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family KD35_17110 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KD35_17110 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KD35_17115 PF04072 Leucine carboxyl methyltransferase KD35_17130 PF00005 ABC transporter KD35_17135 PF02687 FtsX-like permease family KD35_17155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_17155 PF00672 HAMP domain KD35_17155 PF00512 His Kinase A (phospho-acceptor) domain KD35_17160 PF00072 Response regulator receiver domain KD35_17160 PF00486 Transcriptional regulatory protein, C terminal KD35_17170 PF01047 MarR family KD35_17180 PF04299 Putative FMN-binding domain KD35_17185 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KD35_17185 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KD35_17190 PF07690 Major Facilitator Superfamily KD35_17195 PF02589 LUD domain KD35_17200 PF11870 Domain of unknown function (DUF3390) KD35_17200 PF02589 LUD domain KD35_17200 PF13183 4Fe-4S dicluster domain KD35_17205 PF02754 Cysteine-rich domain KD35_17210 PF03466 LysR substrate binding domain KD35_17210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KD35_17220 PF02016 LD-carboxypeptidase N-terminal domain KD35_17220 PF17676 LD-carboxypeptidase C-terminal domain KD35_17245 PF07690 Major Facilitator Superfamily KD35_17250 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KD35_17250 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KD35_17255 PF05116 Sucrose-6F-phosphate phosphohydrolase KD35_17265 PF00356 Bacterial regulatory proteins, lacI family KD35_17270 PF18801 response regulator aspartate phosphatase H, N terminal KD35_17290 PF00817 impB/mucB/samB family KD35_17290 PF11799 impB/mucB/samB family C-terminal domain KD35_17290 PF11798 IMS family HHH motif KD35_17305 PF02743 Cache domain KD35_17305 PF00672 HAMP domain KD35_17305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KD35_17320 PF01554 MatE KD35_17325 PF18496 Collagenase G catalytic helper subdomain KD35_17325 PF01752 Collagenase KD35_17325 PF08453 Peptidase family M9 N-terminal KD35_17335 PF07690 Major Facilitator Superfamily KD35_17340 PF00440 Bacterial regulatory proteins, tetR family KD35_17340 PF16859 Tetracyclin repressor-like, C-terminal domain KD35_17350 PF01022 Bacterial regulatory protein, arsR family KD35_17360 PF03313 Serine dehydratase alpha chain KD35_17365 PF03315 Serine dehydratase beta chain KD35_17365 PF01842 ACT domain KD35_17375 PF00202 Aminotransferase class-III KD35_17380 PF07503 HypF finger KD35_17380 PF17788 HypF Kae1-like domain KD35_17380 PF00708 Acylphosphatase KD35_17380 PF01300 Telomere recombination KD35_17385 PF02769 AIR synthase related protein, C-terminal domain KD35_17385 PF00586 AIR synthase related protein, N-terminal domain KD35_17390 PF00857 Isochorismatase family KD35_17395 PF01037 Lrp/AsnC ligand binding domain KD35_17400 PF13520 Amino acid permease KD35_17415 PF01842 ACT domain KD35_17415 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KD35_17415 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KD35_17420 PF00266 Aminotransferase class-V KD35_17435 PF04542 Sigma-70 region 2 KD35_17435 PF08281 Sigma-70, region 4 KD35_17450 PF07883 Cupin domain KD35_17460 PF12833 Helix-turn-helix domain KD35_17460 PF01497 Periplasmic binding protein KD35_17465 PF01804 Penicillin amidase KD35_17475 PF00395 S-layer homology domain KD35_17510 PF14044 NETI protein KD35_17515 PF07690 Major Facilitator Superfamily KD35_17520 PF12697 Alpha/beta hydrolase family KD35_17525 PF01047 MarR family KD35_17530 PF07690 Major Facilitator Superfamily KD35_17545 PF12679 ABC-2 family transporter protein KD35_17550 PF13732 Domain of unknown function (DUF4162) KD35_17550 PF00005 ABC transporter KD35_17555 PF13396 Phospholipase_D-nuclease N-terminal KD35_17565 PF17314 Family of unknown function (DUF5360) KD35_17570 PF00893 Small Multidrug Resistance protein KD35_17575 PF00440 Bacterial regulatory proteins, tetR family KD35_17580 PF17440 Thiol-activated cytolysin beta sandwich domain KD35_17580 PF01289 Thiol-activated cytolysin KD35_17590 PF02667 Short chain fatty acid transporter KD35_17600 PF02525 Flavodoxin-like fold KD35_17620 PF14256 YwiC-like protein KD35_17630 PF00005 ABC transporter KD35_17635 PF02361 Cobalt transport protein KD35_17650 PF03737 Aldolase/RraA KD35_17655 PF03606 C4-dicarboxylate anaerobic carrier KD35_17660 PF04231 Endonuclease I KD35_17675 PF01381 Helix-turn-helix KD35_17680 PF02660 Glycerol-3-phosphate acyltransferase KD35_17685 PF04073 Aminoacyl-tRNA editing domain KD35_17690 PF13393 Histidyl-tRNA synthetase KD35_17690 PF03129 Anticodon binding domain KD35_17705 PF01638 HxlR-like helix-turn-helix KD35_17710 PF00881 Nitroreductase family KD35_17720 PF00224 Pyruvate kinase, barrel domain KD35_17720 PF02887 Pyruvate kinase, alpha/beta domain KD35_17720 PF00391 PEP-utilising enzyme, mobile domain KD35_17740 PF00005 ABC transporter KD35_17765 PF13419 Haloacid dehalogenase-like hydrolase KD35_17790 PF13344 Haloacid dehalogenase-like hydrolase KD35_17790 PF00293 NUDIX domain KD35_17800 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KD35_17805 PF00480 ROK family KD35_17810 PF07690 Major Facilitator Superfamily KD35_17815 PF14602 Hexapeptide repeat of succinyl-transferase KD35_17815 PF12464 Maltose acetyltransferase KD35_17825 PF00005 ABC transporter KD35_17830 PF00579 tRNA synthetases class I (W and Y) KD35_17835 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase KD35_17835 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain KD35_17835 PF13288 DXP reductoisomerase C-terminal domain KD35_17840 PF01594 AI-2E family transporter KD35_17860 PF08241 Methyltransferase domain KD35_17870 PF07690 Major Facilitator Superfamily KD35_17890 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KD35_17900 PF00571 CBS domain KD35_17900 PF01595 Cyclin M transmembrane N-terminal domain KD35_17900 PF03471 Transporter associated domain KD35_17905 PF13411 MerR HTH family regulatory protein KD35_17910 PF00892 EamA-like transporter family KD35_17915 PF00805 Pentapeptide repeats (8 copies) KD35_17920 PF06906 Protein of unknown function (DUF1272) KD35_17925 PF10282 Lactonase, 7-bladed beta-propeller KD35_17930 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KD35_17930 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KD35_17935 PF02447 GntP family permease KD35_17940 PF00923 Transaldolase/Fructose-6-phosphate aldolase KD35_17945 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain KD35_17945 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KD35_17950 PF02779 Transketolase, pyrimidine binding domain KD35_17950 PF00456 Transketolase, thiamine diphosphate binding domain KD35_17950 PF02780 Transketolase, C-terminal domain KD35_17955 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain KD35_17955 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain KD35_17960 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain KD35_17960 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain KD35_17965 PF08240 Alcohol dehydrogenase GroES-like domain KD35_17965 PF00107 Zinc-binding dehydrogenase KD35_17970 PF00296 Luciferase-like monooxygenase KD35_17980 PF16197 Ketoacyl-synthetase C-terminal extension KD35_17980 PF14765 Polyketide synthase dehydratase KD35_17980 PF00107 Zinc-binding dehydrogenase KD35_17980 PF00109 Beta-ketoacyl synthase, N-terminal domain KD35_17980 PF00550 Phosphopantetheine attachment site KD35_17980 PF00698 Acyl transferase domain KD35_17980 PF08240 Alcohol dehydrogenase GroES-like domain KD35_17980 PF08659 KR domain KD35_17980 PF02801 Beta-ketoacyl synthase, C-terminal domain KD35_17990 PF00106 short chain dehydrogenase KD35_17995 PF03413 Peptidase propeptide and YPEB domain KD35_17995 PF07504 Fungalysin/Thermolysin Propeptide Motif KD35_17995 PF02868 Thermolysin metallopeptidase, alpha-helical domain KD35_17995 PF01447 Thermolysin metallopeptidase, catalytic domain KD35_18015 PF00248 Aldo/keto reductase family KD35_18020 PF07690 Major Facilitator Superfamily KD35_18030 PF03928 Haem-degrading KD35_18035 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KD35_18065 PF03960 ArsC family KD35_18075 PF01638 HxlR-like helix-turn-helix KD35_18080 PF00392 Bacterial regulatory proteins, gntR family KD35_18080 PF07702 UTRA domain KD35_18095 PF01638 HxlR-like helix-turn-helix KD35_18100 PF01638 HxlR-like helix-turn-helix KD35_18105 PF00248 Aldo/keto reductase family KD35_18135 PF02567 Phenazine biosynthesis-like protein KD35_18155 PF00501 AMP-binding enzyme KD35_18155 PF13193 AMP-binding enzyme C-terminal domain KD35_18165 PF01638 HxlR-like helix-turn-helix KD35_18185 PF01022 Bacterial regulatory protein, arsR family KD35_18195 PF12791 Anti-sigma factor N-terminus KD35_18200 PF04542 Sigma-70 region 2 KD35_18215 PF00440 Bacterial regulatory proteins, tetR family KD35_18235 PF05656 Protein of unknown function (DUF805) KD35_18240 PF01061 ABC-2 type transporter KD35_18245 PF00005 ABC transporter KD35_18245 PF13732 Domain of unknown function (DUF4162) KD35_18260 PF03063 Prismane/CO dehydrogenase family KD35_18270 PF00753 Metallo-beta-lactamase superfamily KD35_18275 PF01471 Putative peptidoglycan binding domain KD35_18275 PF01183 Glycosyl hydrolases family 25 KD35_18300 PF00144 Beta-lactamase KD35_18340 PF00753 Metallo-beta-lactamase superfamily KD35_18345 PF08240 Alcohol dehydrogenase GroES-like domain KD35_18345 PF00107 Zinc-binding dehydrogenase KD35_18350 PF00324 Amino acid permease KD35_18355 PF07690 Major Facilitator Superfamily KD35_18385 PF02585 GlcNAc-PI de-N-acetylase KD35_18390 PF08830 Protein of unknown function (DUF1806) KD35_18395 PF03600 Citrate transporter KD35_18415 PF01497 Periplasmic binding protein KD35_18425 PF01032 FecCD transport family KD35_18430 PF01032 FecCD transport family KD35_18435 PF05675 Protein of unknown function (DUF817) KD35_18440 PF02567 Phenazine biosynthesis-like protein KD35_18445 PF13170 Protein of unknown function (DUF4003) KD35_18460 PF10901 Protein of unknown function (DUF2690) KD35_18470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KD35_18470 PF03466 LysR substrate binding domain KD35_18475 PF00107 Zinc-binding dehydrogenase KD35_18475 PF08240 Alcohol dehydrogenase GroES-like domain KD35_18490 PF00488 MutS domain V KD35_18490 PF01713 Smr domain KD35_18500 PF09154 Domain of unknown function (DUF1939) KD35_18500 PF00128 Alpha amylase, catalytic domain KD35_18505 PF00797 N-acetyltransferase KD35_18515 PF00144 Beta-lactamase KD35_18525 PF07690 Major Facilitator Superfamily KD35_18530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KD35_18530 PF03466 LysR substrate binding domain KD35_18545 PF03009 Glycerophosphoryl diester phosphodiesterase family KD35_18565 PF01494 FAD binding domain KD35_18570 PF01022 Bacterial regulatory protein, arsR family KD35_18575 PF00107 Zinc-binding dehydrogenase KD35_18575 PF08240 Alcohol dehydrogenase GroES-like domain KD35_18580 PF02696 Uncharacterized ACR, YdiU/UPF0061 family KD35_18595 PF04299 Putative FMN-binding domain KD35_18600 PF04229 GrpB protein KD35_18610 PF01758 Sodium Bile acid symporter family KD35_18615 PF01565 FAD binding domain KD35_18615 PF02913 FAD linked oxidases, C-terminal domain KD35_18640 PF00132 Bacterial transferase hexapeptide (six repeats) KD35_18645 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family KD35_18650 PF00535 Glycosyl transferase family 2 KD35_18655 PF00378 Enoyl-CoA hydratase/isomerase KD35_18660 PF08453 Peptidase family M9 N-terminal KD35_18660 PF01752 Collagenase KD35_18660 PF18496 Collagenase G catalytic helper subdomain KD35_18665 PF02308 MgtC family KD35_18675 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KD35_18680 PF04294 VanW like protein KD35_18690 PF13037 Domain of unknown function (DUF3898) KD35_18690 PF13039 Protein of unknown function (DUF3900) KD35_18710 PF00313 'Cold-shock' DNA-binding domain KD35_18720 PF00258 Flavodoxin KD35_18730 PF00293 NUDIX domain KD35_18740 PF00132 Bacterial transferase hexapeptide (six repeats) KD35_18750 PF00106 short chain dehydrogenase KD35_18760 PF14698 Argininosuccinate lyase C-terminal KD35_18760 PF00206 Lyase KD35_18770 PF01156 Inosine-uridine preferring nucleoside hydrolase KD35_18775 PF00474 Sodium:solute symporter family KD35_18785 PF00171 Aldehyde dehydrogenase family KD35_18795 PF14151 YfhD-like protein KD35_18800 PF13249 Squalene-hopene cyclase N-terminal domain KD35_18800 PF13243 Squalene-hopene cyclase C-terminal domain KD35_18805 PF02681 Divergent PAP2 family KD35_18810 PF00892 EamA-like transporter family KD35_18815 PF06961 Protein of unknown function (DUF1294) KD35_18830 PF10609 NUBPL iron-transfer P-loop NTPase KD35_18840 PF02391 MoaE protein KD35_18845 PF03453 MoeA N-terminal region (domain I and II) KD35_18845 PF00994 Probable molybdopterin binding domain KD35_18845 PF03454 MoeA C-terminal region (domain IV) KD35_18850 PF00899 ThiF family KD35_18855 PF01226 Formate/nitrite transporter KD35_18860 PF04055 Radical SAM superfamily KD35_18860 PF06463 Molybdenum Cofactor Synthesis C KD35_18865 PF02634 FdhD/NarQ family KD35_18870 PF10057 Uncharacterized conserved protein (DUF2294) KD35_18875 PF07849 Protein of unknown function (DUF1641) KD35_18880 PF00037 4Fe-4S binding domain KD35_18880 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KD35_18880 PF00384 Molybdopterin oxidoreductase KD35_18880 PF01568 Molydopterin dinucleotide binding domain KD35_18880 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region KD35_18890 PF03323 Bacillus/Clostridium GerA spore germination protein KD35_18930 PF08241 Methyltransferase domain KD35_18935 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KD35_18940 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KD35_18945 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KD35_18950 PF00375 Sodium:dicarboxylate symporter family KD35_18955 PF03816 Cell envelope-related transcriptional attenuator domain KD35_18965 PF08281 Sigma-70, region 4 KD35_18965 PF04542 Sigma-70 region 2 KD35_18990 PF00005 ABC transporter KD35_18990 PF13732 Domain of unknown function (DUF4162) KD35_19000 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KD35_19000 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KD35_19005 PF03989 DNA gyrase C-terminal domain, beta-propeller KD35_19005 PF00521 DNA gyrase/topoisomerase IV, subunit A KD35_19010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_19010 PF00204 DNA gyrase B KD35_19010 PF00986 DNA gyrase B subunit, carboxyl terminus KD35_19010 PF01751 Toprim domain KD35_19020 PF13380 CoA binding domain KD35_19025 PF13180 PDZ domain KD35_19030 PF00072 Response regulator receiver domain KD35_19030 PF00486 Transcriptional regulatory protein, C terminal KD35_19035 PF04055 Radical SAM superfamily KD35_19040 PF13597 Anaerobic ribonucleoside-triphosphate reductase KD35_19040 PF03477 ATP cone domain KD35_19045 PF02660 Glycerol-3-phosphate acyltransferase KD35_19050 PF01521 Iron-sulphur cluster biosynthesis KD35_19055 PF03061 Thioesterase superfamily KD35_19060 PF00704 Glycosyl hydrolases family 18 KD35_19060 PF01476 LysM domain KD35_19070 PF08177 Small acid-soluble spore protein N family KD35_19075 PF13040 Fur-regulated basic protein B KD35_19080 PF11490 DNA polymerase III polC-type N-terminus II KD35_19080 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KD35_19080 PF14579 Helix-hairpin-helix motif KD35_19080 PF02811 PHP domain KD35_19080 PF00929 Exonuclease KD35_19080 PF01336 OB-fold nucleic acid binding domain KD35_19080 PF07733 Bacterial DNA polymerase III alpha NTPase domain KD35_19085 PF00578 AhpC/TSA family KD35_19095 PF00005 ABC transporter KD35_19095 PF00664 ABC transporter transmembrane region KD35_19095 PF03412 Peptidase C39 family KD35_19100 PF00330 Aconitase family (aconitate hydratase) KD35_19100 PF00694 Aconitase C-terminal domain KD35_19110 PF01522 Polysaccharide deacetylase KD35_19130 PF07690 Major Facilitator Superfamily KD35_19140 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KD35_19140 PF01411 tRNA synthetases class II (A) KD35_19140 PF02272 DHHA1 domain KD35_19145 PF00293 NUDIX domain KD35_19145 PF13344 Haloacid dehalogenase-like hydrolase KD35_19155 PF02803 Thiolase, C-terminal domain KD35_19155 PF00108 Thiolase, N-terminal domain KD35_19160 PF13193 AMP-binding enzyme C-terminal domain KD35_19160 PF00501 AMP-binding enzyme KD35_19165 PF02632 BioY family KD35_19170 PF00501 AMP-binding enzyme KD35_19170 PF13193 AMP-binding enzyme C-terminal domain KD35_19185 PF05532 CsbD-like KD35_19215 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KD35_19215 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KD35_19225 PF00989 PAS fold KD35_19225 PF00512 His Kinase A (phospho-acceptor) domain KD35_19225 PF13426 PAS domain KD35_19225 PF13188 PAS domain KD35_19225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_19230 PF01738 Dienelactone hydrolase family KD35_19235 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KD35_19240 PF00474 Sodium:solute symporter family KD35_19245 PF01645 Conserved region in glutamate synthase KD35_19250 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KD35_19255 PF02559 CarD-like/TRCF domain KD35_19260 PF00491 Arginase family KD35_19265 PF01979 Amidohydrolase family KD35_19270 PF01175 Urocanase Rossmann-like domain KD35_19270 PF17391 Urocanase N-terminal domain KD35_19270 PF17392 Urocanase C-terminal domain KD35_19275 PF00221 Aromatic amino acid lyase KD35_19280 PF09021 HutP KD35_19285 PF01209 ubiE/COQ5 methyltransferase family KD35_19310 PF11084 Protein of unknown function (DUF2621) KD35_19340 PF07301 Protein of unknown function (DUF1453) KD35_19345 PF02683 Cytochrome C biogenesis protein transmembrane region KD35_19355 PF03466 LysR substrate binding domain KD35_19355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KD35_19360 PF03788 LrgA family KD35_19365 PF04172 LrgB-like family KD35_19370 PF00293 NUDIX domain KD35_19370 PF13344 Haloacid dehalogenase-like hydrolase KD35_19380 PF01925 Sulfite exporter TauE/SafE KD35_19390 PF01471 Putative peptidoglycan binding domain KD35_19390 PF01510 N-acetylmuramoyl-L-alanine amidase KD35_19405 PF00005 ABC transporter KD35_19405 PF00664 ABC transporter transmembrane region KD35_19410 PF00664 ABC transporter transmembrane region KD35_19410 PF00005 ABC transporter KD35_19415 PF03672 Uncharacterised protein family (UPF0154) KD35_19420 PF10747 Sporulation inhibitor of replication protein SirA KD35_19425 PF00456 Transketolase, thiamine diphosphate binding domain KD35_19425 PF02780 Transketolase, C-terminal domain KD35_19425 PF02779 Transketolase, pyrimidine binding domain KD35_19430 PF07282 Putative transposase DNA-binding domain KD35_19430 PF12323 Helix-turn-helix domain KD35_19430 PF01385 Probable transposase KD35_19440 PF00528 Binding-protein-dependent transport system inner membrane component KD35_19445 PF00528 Binding-protein-dependent transport system inner membrane component KD35_19450 PF00005 ABC transporter KD35_19465 PF00149 Calcineurin-like phosphoesterase KD35_19465 PF02872 5'-nucleotidase, C-terminal domain KD35_19470 PF05979 Bacterial protein of unknown function (DUF896) KD35_19475 PF00239 Resolvase, N terminal domain KD35_19480 PF00717 Peptidase S24-like KD35_19480 PF01726 LexA DNA binding domain KD35_19495 PF03551 Transcriptional regulator PadR-like family KD35_19530 PF01510 N-acetylmuramoyl-L-alanine amidase KD35_19530 PF01476 LysM domain KD35_19530 PF01471 Putative peptidoglycan binding domain KD35_19535 PF05105 Bacteriophage holin family KD35_19695 PF08281 Sigma-70, region 4 KD35_19740 PF02511 Thymidylate synthase complementing protein KD35_19745 PF00145 C-5 cytosine-specific DNA methylase KD35_19820 PF01381 Helix-turn-helix KD35_19840 PF02899 Phage integrase, N-terminal SAM-like domain KD35_19840 PF00589 Phage integrase family KD35_19845 PF00120 Glutamine synthetase, catalytic domain KD35_19845 PF03951 Glutamine synthetase, beta-Grasp domain KD35_19850 PF13411 MerR HTH family regulatory protein KD35_19855 PF06838 Methionine gamma-lyase KD35_19865 PF03458 UPF0126 domain KD35_19870 PF00004 ATPase family associated with various cellular activities (AAA) KD35_19870 PF17866 AAA lid domain KD35_19885 PF17209 Hfq protein KD35_19900 PF06725 3D domain KD35_19900 PF01476 LysM domain KD35_19905 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KD35_19905 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KD35_19910 PF00294 pfkB family carbohydrate kinase KD35_19915 PF08220 DeoR-like helix-turn-helix domain KD35_19915 PF00455 DeoR C terminal sensor domain KD35_19925 PF04238 Protein of unknown function (DUF420) KD35_19940 PF00324 Amino acid permease KD35_19945 PF00704 Glycosyl hydrolases family 18 KD35_19945 PF00041 Fibronectin type III domain KD35_19950 PF10518 TAT (twin-arginine translocation) pathway signal sequence KD35_19950 PF00149 Calcineurin-like phosphoesterase KD35_19955 PF01226 Formate/nitrite transporter KD35_19960 PF00216 Bacterial DNA-binding protein KD35_19965 PF00403 Heavy-metal-associated domain KD35_19970 PF00403 Heavy-metal-associated domain KD35_19975 PF02583 Metal-sensitive transcriptional repressor KD35_19985 PF00756 Putative esterase KD35_19990 PF00005 ABC transporter KD35_19995 PF01032 FecCD transport family KD35_20000 PF01032 FecCD transport family KD35_20005 PF01497 Periplasmic binding protein KD35_20015 PF03372 Endonuclease/Exonuclease/phosphatase family KD35_20020 PF02805 Metal binding domain of Ada KD35_20020 PF12833 Helix-turn-helix domain KD35_20025 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KD35_20025 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KD35_20030 PF00730 HhH-GPD superfamily base excision DNA repair protein KD35_20030 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain KD35_20035 PF07687 Peptidase dimerisation domain KD35_20035 PF01546 Peptidase family M20/M25/M40 KD35_20055 PF00561 alpha/beta hydrolase fold KD35_20060 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KD35_20065 PF00990 Diguanylate cyclase, GGDEF domain KD35_20065 PF03707 Bacterial signalling protein N terminal repeat KD35_20065 PF00563 EAL domain KD35_20080 PF10787 Uncharacterised protein from bacillus cereus group KD35_20085 PF04172 LrgB-like family KD35_20090 PF03788 LrgA family KD35_20095 PF00155 Aminotransferase class I and II KD35_20095 PF00392 Bacterial regulatory proteins, gntR family KD35_20100 PF00364 Biotin-requiring enzyme KD35_20100 PF00561 alpha/beta hydrolase fold KD35_20105 PF02585 GlcNAc-PI de-N-acetylase KD35_20115 PF00388 Phosphatidylinositol-specific phospholipase C, X domain KD35_20120 PF00082 Subtilase family KD35_20125 PF07486 Cell Wall Hydrolase KD35_20130 PF03275 UDP-galactopyranose mutase KD35_20135 PF00884 Sulfatase KD35_20140 PF00350 Dynamin family KD35_20150 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family KD35_20155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_20155 PF00512 His Kinase A (phospho-acceptor) domain KD35_20160 PF00072 Response regulator receiver domain KD35_20160 PF00486 Transcriptional regulatory protein, C terminal KD35_20175 PF00005 ABC transporter KD35_20180 PF01119 DNA mismatch repair protein, C-terminal domain KD35_20180 PF08676 MutL C terminal dimerisation domain KD35_20185 PF00488 MutS domain V KD35_20185 PF05192 MutS domain III KD35_20185 PF01624 MutS domain I KD35_20185 PF05188 MutS domain II KD35_20185 PF05190 MutS family domain IV KD35_20190 PF10628 Outer spore coat protein E (CotE) KD35_20195 PF06133 Control of competence regulator ComK, YlbF/YmcA KD35_20200 PF04055 Radical SAM superfamily KD35_20200 PF01938 TRAM domain KD35_20200 PF00919 Uncharacterized protein family UPF0004 KD35_20205 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KD35_20210 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II KD35_20210 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase KD35_20210 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg KD35_20215 PF01244 Membrane dipeptidase (Peptidase family M19) KD35_20220 PF04232 Stage V sporulation protein S (SpoVS) KD35_20225 PF13277 YmdB-like protein KD35_20230 PF00013 KH domain KD35_20230 PF01966 HD domain KD35_20230 PF12072 Domain of unknown function (DUF3552) KD35_20245 PF02464 Competence-damaged protein KD35_20245 PF18146 Damage-inducible protein CinA KH domain KD35_20245 PF00994 Probable molybdopterin binding domain KD35_20250 PF01066 CDP-alcohol phosphatidyltransferase KD35_20255 PF13464 Domain of unknown function (DUF4115) KD35_20260 PF11868 Protein of unknown function (DUF3388) KD35_20265 PF11588 Protein of unknown function (DUF3243) KD35_20275 PF05193 Peptidase M16 inactive domain KD35_20275 PF00675 Insulinase (Peptidase family M16) KD35_20280 PF05193 Peptidase M16 inactive domain KD35_20310 PF07702 UTRA domain KD35_20310 PF00392 Bacterial regulatory proteins, gntR family KD35_20315 PF09397 Ftsk gamma domain KD35_20315 PF01580 FtsK/SpoIIIE family KD35_20315 PF17854 FtsK alpha domain KD35_20320 PF14035 YlzJ-like protein KD35_20325 PF00574 Clp protease KD35_20330 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain KD35_20330 PF17770 Ribonuclease J C-terminal domain KD35_20330 PF00753 Metallo-beta-lactamase superfamily KD35_20340 PF00701 Dihydrodipicolinate synthetase family KD35_20345 PF00696 Amino acid kinase family KD35_20345 PF13840 ACT domain KD35_20350 PF01118 Semialdehyde dehydrogenase, NAD binding domain KD35_20350 PF02774 Semialdehyde dehydrogenase, dimerisation domain KD35_20355 PF02441 Flavoprotein KD35_20360 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KD35_20360 PF16924 Dipicolinate synthase subunit A N-terminal domain KD35_20365 PF05239 PRC-barrel domain KD35_20370 PF00675 Insulinase (Peptidase family M16) KD35_20370 PF05193 Peptidase M16 inactive domain KD35_20375 PF01522 Polysaccharide deacetylase KD35_20380 PF00575 S1 RNA binding domain KD35_20380 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain KD35_20380 PF00013 KH domain KD35_20380 PF03725 3' exoribonuclease family, domain 2 KD35_20380 PF01138 3' exoribonuclease family, domain 1 KD35_20385 PF00312 Ribosomal protein S15 KD35_20390 PF06574 FAD synthetase KD35_20390 PF01687 Riboflavin kinase KD35_20395 PF01509 TruB family pseudouridylate synthase (N terminal domain) KD35_20395 PF16198 tRNA pseudouridylate synthase B C-terminal domain KD35_20400 PF02033 Ribosome-binding factor A KD35_20405 PF04456 Protein of unknown function (DUF503) KD35_20410 PF04760 Translation initiation factor IF-2, N-terminal region KD35_20410 PF00009 Elongation factor Tu GTP binding domain KD35_20410 PF11987 Translation-initiation factor 2 KD35_20415 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KD35_20420 PF04296 Protein of unknown function (DUF448) KD35_20425 PF00575 S1 RNA binding domain KD35_20425 PF08529 NusA N-terminal domain KD35_20425 PF13184 NusA-like KH domain KD35_20430 PF02576 RimP N-terminal domain KD35_20430 PF17384 RimP C-terminal SH3 domain KD35_20435 PF14579 Helix-hairpin-helix motif KD35_20435 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KD35_20435 PF02811 PHP domain KD35_20435 PF07733 Bacterial DNA polymerase III alpha NTPase domain KD35_20435 PF11490 DNA polymerase III polC-type N-terminus II KD35_20435 PF00929 Exonuclease KD35_20435 PF14480 DNA polymerase III polC-type N-terminus I KD35_20440 PF04073 Aminoacyl-tRNA editing domain KD35_20440 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KD35_20440 PF03129 Anticodon binding domain KD35_20445 PF02163 Peptidase family M50 KD35_20445 PF17820 PDZ domain KD35_20450 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain KD35_20450 PF13288 DXP reductoisomerase C-terminal domain KD35_20450 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase KD35_20460 PF01255 Putative undecaprenyl diphosphate synthase KD35_20465 PF01765 Ribosome recycling factor KD35_20470 PF00696 Amino acid kinase family KD35_20475 PF00889 Elongation factor TS KD35_20480 PF00318 Ribosomal protein S2 KD35_20485 PF08222 CodY helix-turn-helix domain KD35_20485 PF06018 CodY GAF-like domain KD35_20490 PF07724 AAA domain (Cdc48 subfamily) KD35_20490 PF00004 ATPase family associated with various cellular activities (AAA) KD35_20490 PF10431 C-terminal, D2-small domain, of ClpB protein KD35_20495 PF00227 Proteasome subunit KD35_20500 PF02899 Phage integrase, N-terminal SAM-like domain KD35_20500 PF00589 Phage integrase family KD35_20505 PF01134 Glucose inhibited division protein A KD35_20510 PF01751 Toprim domain KD35_20510 PF01396 Topoisomerase DNA binding C4 zinc finger KD35_20510 PF01131 DNA topoisomerase KD35_20520 PF00549 CoA-ligase KD35_20520 PF02629 CoA binding domain KD35_20525 PF08442 ATP-grasp domain KD35_20525 PF00549 CoA-ligase KD35_20530 PF01351 Ribonuclease HII KD35_20535 PF01926 50S ribosome-binding GTPase KD35_20540 PF10502 Signal peptidase, peptidase S26 KD35_20545 PF01245 Ribosomal protein L19 KD35_20550 PF01746 tRNA (Guanine-1)-methyltransferase KD35_20555 PF01782 RimM N-terminal domain KD35_20555 PF05239 PRC-barrel domain KD35_20565 PF00886 Ribosomal protein S16 KD35_20570 PF02881 SRP54-type protein, helical bundle domain KD35_20570 PF00448 SRP54-type protein, GTPase domain KD35_20570 PF02978 Signal peptide binding domain KD35_20575 PF04297 Putative helix-turn-helix protein, YlxM / p13 like KD35_20580 PF00448 SRP54-type protein, GTPase domain KD35_20580 PF02881 SRP54-type protein, helical bundle domain KD35_20585 PF06470 SMC proteins Flexible Hinge Domain KD35_20585 PF02463 RecF/RecN/SMC N terminal domain KD35_20590 PF00035 Double-stranded RNA binding motif KD35_20590 PF14622 Ribonuclease-III-like KD35_20595 PF00550 Phosphopantetheine attachment site KD35_20605 PF00698 Acyl transferase domain KD35_20610 PF02504 Fatty acid synthesis protein KD35_20615 PF03061 Thioesterase superfamily KD35_20620 PF17191 RecG wedge domain KD35_20620 PF00271 Helicase conserved C-terminal domain KD35_20620 PF00270 DEAD/DEAH box helicase KD35_20625 PF02734 DAK2 domain KD35_20625 PF13684 Dihydroxyacetone kinase family KD35_20630 PF03780 Asp23 family, cell envelope-related function KD35_20635 PF00830 Ribosomal L28 family KD35_20640 PF08183 Stage V sporulation protein family KD35_20645 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain KD35_20645 PF04263 Thiamin pyrophosphokinase, catalytic domain KD35_20650 PF00834 Ribulose-phosphate 3 epimerase family KD35_20655 PF16745 RsgA N-terminal domain KD35_20655 PF03193 RsgA GTPase KD35_20660 PF00069 Protein kinase domain KD35_20660 PF03793 PASTA domain KD35_20670 PF04055 Radical SAM superfamily KD35_20675 PF01029 NusB family KD35_20675 PF01189 16S rRNA methyltransferase RsmB/F KD35_20680 PF00551 Formyl transferase KD35_20680 PF02911 Formyl transferase, C-terminal domain KD35_20685 PF01327 Polypeptide deformylase KD35_20690 PF18074 Primosomal protein N C-terminal domain KD35_20690 PF18319 PriA DNA helicase Cys-rich region (CRR) domain KD35_20690 PF04851 Type III restriction enzyme, res subunit KD35_20690 PF00271 Helicase conserved C-terminal domain KD35_20690 PF17764 3′ DNA-binding domain (3′BD) KD35_20695 PF02441 Flavoprotein KD35_20695 PF04127 DNA / pantothenate metabolism flavoprotein KD35_20700 PF01192 RNA polymerase Rpb6 KD35_20705 PF00625 Guanylate kinase KD35_20710 PF04025 Domain of unknown function (DUF370) KD35_20715 PF08340 Domain of unknown function (DUF1732) KD35_20715 PF03755 YicC-like family, N-terminal region KD35_20720 PF00689 Cation transporting ATPase, C-terminus KD35_20720 PF00690 Cation transporter/ATPase, N-terminus KD35_20730 PF01321 Creatinase/Prolidase N-terminal domain KD35_20730 PF00557 Metallopeptidase family M24 KD35_20760 PF00156 Phosphoribosyl transferase domain KD35_20765 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family KD35_20770 PF01180 Dihydroorotate dehydrogenase KD35_20775 PF00175 Oxidoreductase NAD-binding domain KD35_20775 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B KD35_20780 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain KD35_20780 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KD35_20780 PF02142 MGS-like domain KD35_20785 PF00117 Glutamine amidotransferase class-I KD35_20785 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain KD35_20790 PF01979 Amidohydrolase family KD35_20795 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KD35_20795 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KD35_20800 PF00860 Permease family KD35_20805 PF00156 Phosphoribosyl transferase domain KD35_20810 PF00849 RNA pseudouridylate synthase KD35_20810 PF01479 S4 domain KD35_20815 PF01252 Signal peptidase (SPase) II KD35_20825 PF08264 Anticodon-binding domain of tRNA KD35_20825 PF00133 tRNA synthetases class I (I, L, M and V) KD35_20825 PF06827 Zinc finger found in FPG and IleRS KD35_20830 PF05103 DivIVA protein KD35_20835 PF17774 Putative RNA-binding domain in YlmH KD35_20835 PF01479 S4 domain KD35_20840 PF02325 YGGT family KD35_20845 PF04472 Cell division protein SepF KD35_20850 PF01168 Alanine racemase, N-terminal domain KD35_20860 PF05239 PRC-barrel domain KD35_20865 PF04539 Sigma-70 region 3 KD35_20865 PF04545 Sigma-70, region 4 KD35_20865 PF04542 Sigma-70 region 2 KD35_20870 PF04542 Sigma-70 region 2 KD35_20870 PF04545 Sigma-70, region 4 KD35_20875 PF03419 Sporulation factor SpoIIGA KD35_20880 PF00091 Tubulin/FtsZ family, GTPase domain KD35_20880 PF12327 FtsZ family, C-terminal domain KD35_20885 PF02491 SHS2 domain inserted in FTSA KD35_20890 PF08478 POTRA domain, FtsQ-type KD35_20890 PF03799 Cell division protein FtsQ KD35_20895 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain KD35_20895 PF01565 FAD binding domain KD35_20900 PF03033 Glycosyltransferase family 28 N-terminal domain KD35_20900 PF04101 Glycosyltransferase family 28 C-terminal domain KD35_20905 PF01098 Cell cycle protein KD35_20910 PF08245 Mur ligase middle domain KD35_20910 PF02875 Mur ligase family, glutamate ligase domain KD35_20915 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 KD35_20915 PF00953 Glycosyl transferase family 4 KD35_20920 PF01225 Mur ligase family, catalytic domain KD35_20920 PF08245 Mur ligase middle domain KD35_20920 PF02875 Mur ligase family, glutamate ligase domain KD35_20925 PF00905 Penicillin binding protein transpeptidase domain KD35_20925 PF03717 Penicillin-binding Protein dimerisation domain KD35_20925 PF03793 PASTA domain KD35_20935 PF04977 Septum formation initiator KD35_20940 PF01795 MraW methylase family KD35_20945 PF10079 Bacillithiol biosynthesis BshC KD35_20950 PF08546 Ketopantoate reductase PanE/ApbA C terminal KD35_20950 PF02558 Ketopantoate reductase PanE/ApbA KD35_20955 PF00583 Acetyltransferase (GNAT) family KD35_20965 PF01783 Ribosomal L32p protein family KD35_20970 PF02620 Large ribosomal RNA subunit accumulation protein YceD KD35_21015 PF01510 N-acetylmuramoyl-L-alanine amidase KD35_21015 PF12123 N-acetylmuramoyl-l-alanine amidase KD35_21020 PF05105 Bacteriophage holin family KD35_21105 PF00574 Clp protease KD35_21115 PF03354 Phage Terminase KD35_21135 PF10137 Predicted nucleotide-binding protein containing TIR-like domain KD35_21140 PF00589 Phage integrase family KD35_21195 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KD35_21220 PF04542 Sigma-70 region 2 KD35_21220 PF04539 Sigma-70 region 3 KD35_21220 PF04545 Sigma-70, region 4 KD35_21245 PF01695 IstB-like ATP binding protein KD35_21245 PF07319 Primosomal protein DnaI N-terminus KD35_21275 PF01381 Helix-turn-helix KD35_21285 PF01381 Helix-turn-helix KD35_21300 PF00589 Phage integrase family KD35_21300 PF14659 Phage integrase, N-terminal SAM-like domain KD35_21305 PF05636 HIGH Nucleotidyl Transferase KD35_21310 PF05362 Lon protease (S16) C-terminal proteolytic domain KD35_21310 PF13180 PDZ domain KD35_21315 PF01734 Patatin-like phospholipase KD35_21320 PF07670 Nucleoside recognition KD35_21325 PF01467 Cytidylyltransferase-like KD35_21340 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) KD35_21345 PF06133 Control of competence regulator ComK, YlbF/YmcA KD35_21350 PF00300 Histidine phosphatase superfamily (branch 1) KD35_21355 PF14003 YlbE-like protein KD35_21360 PF14071 Putative coat protein KD35_21365 PF00188 Cysteine-rich secretory protein family KD35_21365 PF14504 CAP-associated N-terminal KD35_21370 PF08868 YugN-like family KD35_21375 PF00795 Carbon-nitrogen hydrolase KD35_21380 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) KD35_21385 PF03626 Prokaryotic Cytochrome C oxidase subunit IV KD35_21390 PF00510 Cytochrome c oxidase subunit III KD35_21395 PF00115 Cytochrome C and Quinol oxidase polypeptide I KD35_21400 PF00116 Cytochrome C oxidase subunit II, periplasmic domain KD35_21400 PF00034 Cytochrome c KD35_21400 PF02790 Cytochrome C oxidase subunit II, transmembrane domain KD35_21405 PF01040 UbiA prenyltransferase family KD35_21410 PF02628 Cytochrome oxidase assembly protein KD35_21415 PF02785 Biotin carboxylase C-terminal domain KD35_21415 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KD35_21415 PF00364 Biotin-requiring enzyme KD35_21415 PF02436 Conserved carboxylase domain KD35_21415 PF00289 Biotin carboxylase, N-terminal domain KD35_21415 PF00682 HMGL-like KD35_21420 PF01098 Cell cycle protein KD35_21425 PF07408 Protein of unknown function (DUF1507) KD35_21435 PF02562 PhoH-like protein KD35_21435 PF13638 PIN domain KD35_21445 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) KD35_21455 PF14036 YlaH-like protein KD35_21470 PF00459 Inositol monophosphatase family KD35_21480 PF06335 Protein of unknown function (DUF1054) KD35_21485 PF05256 Uncharacterised protein family (UPF0223) KD35_21490 PF01276 Orn/Lys/Arg decarboxylase, major domain KD35_21490 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain KD35_21530 PF07992 Pyridine nucleotide-disulphide oxidoreductase KD35_21530 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KD35_21535 PF02817 e3 binding domain KD35_21535 PF00364 Biotin-requiring enzyme KD35_21535 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KD35_21540 PF02779 Transketolase, pyrimidine binding domain KD35_21540 PF02780 Transketolase, C-terminal domain KD35_21545 PF00676 Dehydrogenase E1 component KD35_21555 PF01327 Polypeptide deformylase KD35_21570 PF17770 Ribonuclease J C-terminal domain KD35_21570 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain KD35_21570 PF00753 Metallo-beta-lactamase superfamily KD35_21575 PF02254 TrkA-N domain KD35_21575 PF02080 TrkA-C domain KD35_21585 PF01546 Peptidase family M20/M25/M40 KD35_21585 PF07687 Peptidase dimerisation domain KD35_21590 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal KD35_21590 PF00132 Bacterial transferase hexapeptide (six repeats) KD35_21590 PF14602 Hexapeptide repeat of succinyl-transferase KD35_21595 PF03466 LysR substrate binding domain KD35_21595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KD35_21610 PF04308 Ribonuclease H-like KD35_21620 PF08796 Protein of unknown function (DUF1797) KD35_21635 PF10388 EAL-domain associated signalling protein domain KD35_21635 PF00563 EAL domain KD35_21645 PF00149 Calcineurin-like phosphoesterase KD35_21645 PF10518 TAT (twin-arginine translocation) pathway signal sequence KD35_21655 PF13090 Polyphosphate kinase C-terminal domain 2 KD35_21655 PF13089 Polyphosphate kinase N-terminal domain KD35_21655 PF17941 Polyphosphate kinase C-terminal domain 1 KD35_21655 PF02503 Polyphosphate kinase middle domain KD35_21660 PF02541 Ppx/GppA phosphatase family KD35_21665 PF14177 YkyB-like protein KD35_21695 PF07690 Major Facilitator Superfamily KD35_21710 PF08267 Cobalamin-independent synthase, N-terminal domain KD35_21710 PF01717 Cobalamin-independent synthase, Catalytic domain KD35_21720 PF14040 Deoxyribonuclease NucA/NucB KD35_21730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_21730 PF00512 His Kinase A (phospho-acceptor) domain KD35_21740 PF00155 Aminotransferase class I and II KD35_21745 PF00356 Bacterial regulatory proteins, lacI family KD35_21745 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family KD35_21750 PF00528 Binding-protein-dependent transport system inner membrane component KD35_21755 PF00528 Binding-protein-dependent transport system inner membrane component KD35_21760 PF13416 Bacterial extracellular solute-binding protein KD35_21765 PF16657 Maltogenic Amylase, C-terminal domain KD35_21765 PF00128 Alpha amylase, catalytic domain KD35_21765 PF02903 Alpha amylase, N-terminal ig-like domain KD35_21770 PF00128 Alpha amylase, catalytic domain KD35_21770 PF16657 Maltogenic Amylase, C-terminal domain KD35_21775 PF00005 ABC transporter KD35_21775 PF17912 MalK OB fold domain KD35_21775 PF03459 TOBE domain KD35_21815 PF00108 Thiolase, N-terminal domain KD35_21815 PF02803 Thiolase, C-terminal domain KD35_21820 PF00293 NUDIX domain KD35_21855 PF03551 Transcriptional regulator PadR-like family KD35_21875 PF01636 Phosphotransferase enzyme family KD35_21880 PF00795 Carbon-nitrogen hydrolase KD35_21885 PF00155 Aminotransferase class I and II KD35_21890 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain KD35_21890 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain KD35_21900 PF00596 Class II Aldolase and Adducin N-terminal domain KD35_21905 PF03079 ARD/ARD' family KD35_21925 PF00990 Diguanylate cyclase, GGDEF domain KD35_21930 PF00881 Nitroreductase family KD35_21945 PF02896 PEP-utilising enzyme, TIM barrel domain KD35_21945 PF05524 PEP-utilising enzyme, N-terminal KD35_21945 PF00391 PEP-utilising enzyme, mobile domain KD35_21950 PF00381 PTS HPr component phosphorylation site KD35_21955 PF00367 phosphotransferase system, EIIB KD35_21955 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 KD35_21955 PF02378 Phosphotransferase system, EIIC KD35_21960 PF00874 PRD domain KD35_21960 PF03123 CAT RNA binding domain KD35_21975 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase KD35_21980 PF01979 Amidohydrolase family KD35_21990 PF04079 Segregation and condensation complex subunit ScpB KD35_22000 PF02616 Segregation and condensation protein ScpA KD35_22010 PF03745 Domain of unknown function (DUF309) KD35_22015 PF00583 Acetyltransferase (GNAT) family KD35_22025 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KD35_22030 PF06207 Protein of unknown function (DUF1002) KD35_22040 PF03323 Bacillus/Clostridium GerA spore germination protein KD35_22045 PF14097 Stage V sporulation protein AE1 KD35_22050 PF03862 SpoVAC/SpoVAEB sporulation membrane protein KD35_22055 PF07451 Stage V sporulation protein AD (SpoVAD) KD35_22060 PF03862 SpoVAC/SpoVAEB sporulation membrane protein KD35_22065 PF13782 Stage V sporulation protein AB KD35_22070 PF12164 Stage V sporulation protein AA KD35_22080 PF00209 Sodium:neurotransmitter symporter family KD35_22085 PF04545 Sigma-70, region 4 KD35_22085 PF04539 Sigma-70 region 3 KD35_22085 PF04542 Sigma-70 region 2 KD35_22090 PF13581 Histidine kinase-like ATPase domain KD35_22095 PF01740 STAS domain KD35_22100 PF07943 Penicillin-binding protein 5, C-terminal domain KD35_22100 PF00768 D-alanyl-D-alanine carboxypeptidase KD35_22105 PF00392 Bacterial regulatory proteins, gntR family KD35_22110 PF00005 ABC transporter KD35_22130 PF01047 MarR family KD35_22140 PF00860 Permease family KD35_22145 PF01544 CorA-like Mg2+ transporter protein KD35_22150 PF00591 Glycosyl transferase family, a/b domain KD35_22150 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain KD35_22150 PF02885 Glycosyl transferase family, helical bundle domain KD35_22155 PF01048 Phosphorylase superfamily KD35_22160 PF01676 Metalloenzyme superfamily KD35_22170 PF02899 Phage integrase, N-terminal SAM-like domain KD35_22170 PF00589 Phage integrase family KD35_22175 PF14004 Protein of unknown function (DUF4227) KD35_22180 PF01475 Ferric uptake regulator family KD35_22185 PF01944 Stage II sporulation protein M KD35_22195 PF00293 NUDIX domain KD35_22200 PF13072 Mother cell inhibitor of FtsZ KD35_22205 PF00248 Aldo/keto reductase family KD35_22210 PF00248 Aldo/keto reductase family KD35_22215 PF04229 GrpB protein KD35_22215 PF13673 Acetyltransferase (GNAT) domain KD35_22225 PF00746 LPXTG cell wall anchor motif KD35_22225 PF00565 Staphylococcal nuclease homologue KD35_22225 PF00149 Calcineurin-like phosphoesterase KD35_22225 PF02872 5'-nucleotidase, C-terminal domain KD35_22235 PF12146 Serine aminopeptidase, S33 KD35_22240 PF13726 Na+-H+ antiporter family KD35_22240 PF03553 Na+/H+ antiporter family KD35_22245 PF00356 Bacterial regulatory proteins, lacI family KD35_22250 PF00583 Acetyltransferase (GNAT) family KD35_22255 PF12146 Serine aminopeptidase, S33 KD35_22260 PF10827 Protein of unknown function (DUF2552) KD35_22270 PF01872 RibD C-terminal domain KD35_22270 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KD35_22275 PF00677 Lumazine binding domain KD35_22280 PF00925 GTP cyclohydrolase II KD35_22280 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KD35_22285 PF00885 6,7-dimethyl-8-ribityllumazine synthase KD35_22295 PF04055 Radical SAM superfamily KD35_22295 PF06968 Biotin and Thiamin Synthesis associated domain KD35_22300 PF13847 Methyltransferase domain KD35_22305 PF12697 Alpha/beta hydrolase family KD35_22305 PF08241 Methyltransferase domain KD35_22310 PF00155 Aminotransferase class I and II KD35_22320 PF00202 Aminotransferase class-III KD35_22335 PF02872 5'-nucleotidase, C-terminal domain KD35_22335 PF00149 Calcineurin-like phosphoesterase KD35_22345 PF13404 AsnC-type helix-turn-helix domain KD35_22345 PF01037 Lrp/AsnC ligand binding domain KD35_22360 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KD35_22360 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KD35_22365 PF00202 Aminotransferase class-III KD35_22370 PF00696 Amino acid kinase family KD35_22375 PF01960 ArgJ family KD35_22380 PF02774 Semialdehyde dehydrogenase, dimerisation domain KD35_22380 PF01118 Semialdehyde dehydrogenase, NAD binding domain KD35_22390 PF00106 short chain dehydrogenase KD35_22395 PF00753 Metallo-beta-lactamase superfamily KD35_22405 PF03807 NADP oxidoreductase coenzyme F420-dependent KD35_22405 PF14748 Pyrroline-5-carboxylate reductase dimerisation KD35_22410 PF03313 Serine dehydratase alpha chain KD35_22415 PF01842 ACT domain KD35_22415 PF03315 Serine dehydratase beta chain KD35_22425 PF00753 Metallo-beta-lactamase superfamily KD35_22425 PF12706 Beta-lactamase superfamily domain KD35_22435 PF00817 impB/mucB/samB family KD35_22435 PF11799 impB/mucB/samB family C-terminal domain KD35_22435 PF11798 IMS family HHH motif KD35_22445 PF01546 Peptidase family M20/M25/M40 KD35_22445 PF07687 Peptidase dimerisation domain KD35_22450 PF13302 Acetyltransferase (GNAT) domain KD35_22465 PF03734 L,D-transpeptidase catalytic domain KD35_22470 PF11728 Putative aromatic acid exporter C-terminal domain KD35_22470 PF06081 Aromatic acid exporter family member 1 KD35_22475 PF00005 ABC transporter KD35_22480 PF00528 Binding-protein-dependent transport system inner membrane component KD35_22485 PF00497 Bacterial extracellular solute-binding proteins, family 3 KD35_22495 PF06491 Disulphide isomerase KD35_22500 PF11208 Protein of unknown function (DUF2992) KD35_22510 PF01098 Cell cycle protein KD35_22520 PF02817 e3 binding domain KD35_22520 PF00364 Biotin-requiring enzyme KD35_22520 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KD35_22525 PF02780 Transketolase, C-terminal domain KD35_22525 PF02779 Transketolase, pyrimidine binding domain KD35_22530 PF00676 Dehydrogenase E1 component KD35_22535 PF07992 Pyridine nucleotide-disulphide oxidoreductase KD35_22535 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KD35_22540 PF00871 Acetokinase family KD35_22545 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain KD35_22545 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KD35_22550 PF01515 Phosphate acetyl/butaryl transferase KD35_22560 PF00158 Sigma-54 interaction domain KD35_22560 PF00989 PAS fold KD35_22560 PF02954 Bacterial regulatory protein, Fis family KD35_22570 PF03009 Glycerophosphoryl diester phosphodiesterase family KD35_22575 PF14174 YycC-like protein KD35_22585 PF08769 Sporulation initiation factor Spo0A C terminal KD35_22585 PF00072 Response regulator receiver domain KD35_22590 PF17820 PDZ domain KD35_22590 PF05580 SpoIVB peptidase S55 KD35_22595 PF13476 AAA domain KD35_22600 PF02863 Arginine repressor, C-terminal domain KD35_22600 PF01316 Arginine repressor, DNA binding domain KD35_22605 PF01728 FtsJ-like methyltransferase KD35_22605 PF01479 S4 domain KD35_22610 PF02780 Transketolase, C-terminal domain KD35_22610 PF02779 Transketolase, pyrimidine binding domain KD35_22610 PF13292 1-deoxy-D-xylulose-5-phosphate synthase KD35_22615 PF00348 Polyprenyl synthetase KD35_22620 PF02609 Exonuclease VII small subunit KD35_22625 PF13742 OB-fold nucleic acid binding domain KD35_22625 PF02601 Exonuclease VII, large subunit KD35_22630 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain KD35_22630 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain KD35_22635 PF01029 NusB family KD35_22640 PF03780 Asp23 family, cell envelope-related function KD35_22645 PF02785 Biotin carboxylase C-terminal domain KD35_22645 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KD35_22645 PF00289 Biotin carboxylase, N-terminal domain KD35_22650 PF00364 Biotin-requiring enzyme KD35_22660 PF12685 SpoIIIAH-like protein KD35_22670 PF09581 Stage III sporulation protein AF (Spore_III_AF) KD35_22675 PF09546 Stage III sporulation protein AE (spore_III_AE) KD35_22680 PF06686 Stage III sporulation protein AC/AD protein family KD35_22685 PF06686 Stage III sporulation protein AC/AD protein family KD35_22690 PF09548 Stage III sporulation protein AB (spore_III_AB) KD35_22715 PF01132 Elongation factor P (EF-P) OB domain KD35_22715 PF09285 Elongation factor P, C-terminal KD35_22715 PF08207 Elongation factor P (EF-P) KOW-like domain KD35_22720 PF01321 Creatinase/Prolidase N-terminal domain KD35_22720 PF00557 Metallopeptidase family M24 KD35_22725 PF01220 Dehydroquinase class II KD35_22730 PF11085 Conserved membrane protein YqhR KD35_22735 PF07136 Protein of unknown function (DUF1385) KD35_22745 PF13419 Haloacid dehalogenase-like hydrolase KD35_22750 PF02742 Iron dependent repressor, metal binding and dimerisation domain KD35_22750 PF01325 Iron dependent repressor, N-terminal DNA binding domain KD35_22765 PF03099 Biotin/lipoate A/B protein ligase family KD35_22770 PF00581 Rhodanese-like domain KD35_22775 PF00356 Bacterial regulatory proteins, lacI family KD35_22775 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family KD35_22785 PF00893 Small Multidrug Resistance protein KD35_22790 PF00893 Small Multidrug Resistance protein KD35_22830 PF00005 ABC transporter KD35_22835 PF00392 Bacterial regulatory proteins, gntR family KD35_22850 PF02347 Glycine cleavage system P-protein KD35_22855 PF02347 Glycine cleavage system P-protein KD35_22860 PF01571 Aminomethyltransferase folate-binding domain KD35_22860 PF08669 Glycine cleavage T-protein C-terminal barrel domain KD35_22865 PF00176 SNF2 family N-terminal domain KD35_22865 PF00271 Helicase conserved C-terminal domain KD35_22870 PF11079 Bacterial protein YqhG of unknown function KD35_22890 PF14038 YqzE-like protein KD35_22895 PF01202 Shikimate kinase KD35_22920 PF07963 Prokaryotic N-terminal methylation motif KD35_22930 PF00482 Type II secretion system (T2SS), protein F KD35_22935 PF00437 Type II/IV secretion system protein KD35_22945 PF11117 Protein of unknown function (DUF2626) KD35_22950 PF00375 Sodium:dicarboxylate symporter family KD35_22985 PF04101 Glycosyltransferase family 28 C-terminal domain KD35_22985 PF03033 Glycosyltransferase family 28 N-terminal domain KD35_22990 PF00809 Pterin binding enzyme KD35_22990 PF02965 Vitamin B12 dependent methionine synthase, activation domain KD35_22990 PF02310 B12 binding domain KD35_22990 PF02574 Homocysteine S-methyltransferase KD35_22990 PF02607 B12 binding domain KD35_22995 PF02219 Methylenetetrahydrofolate reductase KD35_22995 PF02574 Homocysteine S-methyltransferase KD35_23005 PF01053 Cys/Met metabolism PLP-dependent enzyme KD35_23010 PF01053 Cys/Met metabolism PLP-dependent enzyme KD35_23025 PF01022 Bacterial regulatory protein, arsR family KD35_23035 PF00753 Metallo-beta-lactamase superfamily KD35_23040 PF10958 Protein of unknown function (DUF2759) KD35_23045 PF00480 ROK family KD35_23050 PF06014 Bacterial protein of unknown function (DUF910) KD35_23055 PF01812 5-formyltetrahydrofolate cyclo-ligase family KD35_23060 PF00471 Ribosomal protein L33 KD35_23065 PF00483 Nucleotidyl transferase KD35_23070 PF01895 PhoU domain KD35_23075 PF00005 ABC transporter KD35_23080 PF00528 Binding-protein-dependent transport system inner membrane component KD35_23085 PF00528 Binding-protein-dependent transport system inner membrane component KD35_23090 PF12849 PBP superfamily domain KD35_23100 PF07690 Major Facilitator Superfamily KD35_23105 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KD35_23105 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KD35_23125 PF04551 GcpE protein KD35_23130 PF01475 Ferric uptake regulator family KD35_23135 PF00950 ABC 3 transport family KD35_23140 PF00005 ABC transporter KD35_23145 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KD35_23145 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KD35_23150 PF11116 Protein of unknown function (DUF2624) KD35_23155 PF01261 Xylose isomerase-like TIM barrel KD35_23160 PF00270 DEAD/DEAH box helicase KD35_23160 PF00271 Helicase conserved C-terminal domain KD35_23170 PF02401 LytB protein KD35_23175 PF01784 NIF3 (NGG1p interacting factor 3) KD35_23180 PF04816 tRNA (adenine(22)-N(1))-methyltransferase KD35_23185 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KD35_23190 PF04545 Sigma-70, region 4 KD35_23190 PF04539 Sigma-70 region 3 KD35_23190 PF04542 Sigma-70 region 2 KD35_23190 PF00140 Sigma-70 factor, region 1.2 KD35_23190 PF03979 Sigma-70 factor, region 1.1 KD35_23195 PF01807 CHC2 zinc finger KD35_23195 PF08275 DNA primase catalytic core, N-terminal domain KD35_23195 PF10410 DnaB-helicase binding domain of primase KD35_23210 PF03618 Kinase/pyrophosphorylase KD35_23215 PF08279 HTH domain KD35_23215 PF00571 CBS domain KD35_23220 PF11967 Recombination protein O N terminal KD35_23220 PF02565 Recombination protein O C terminal KD35_23230 PF01926 50S ribosome-binding GTPase KD35_23230 PF07650 KH domain KD35_23235 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KD35_23240 PF01219 Prokaryotic diacylglycerol kinase KD35_23245 PF02130 Uncharacterized protein family UPF0054 KD35_23250 PF07698 7TM receptor with intracellular HD hydrolase KD35_23250 PF01966 HD domain KD35_23250 PF07697 7TM-HD extracellular KD35_23255 PF02562 PhoH-like protein KD35_23260 PF06898 Putative stage IV sporulation protein YqfD KD35_23270 PF07873 YabP family KD35_23275 PF09424 Yqey-like protein KD35_23280 PF01165 Ribosomal protein S21 KD35_23285 PF00919 Uncharacterized protein family UPF0004 KD35_23285 PF04055 Radical SAM superfamily KD35_23285 PF01938 TRAM domain KD35_23290 PF04452 RNA methyltransferase KD35_23300 PF01556 DnaJ C terminal domain KD35_23300 PF00684 DnaJ central domain KD35_23300 PF00226 DnaJ domain KD35_23305 PF00012 Hsp70 protein KD35_23310 PF01025 GrpE KD35_23315 PF01628 HrcA protein C terminal domain KD35_23320 PF04055 Radical SAM superfamily KD35_23320 PF06969 HemN C-terminal domain KD35_23325 PF01638 HxlR-like helix-turn-helix KD35_23330 PF03144 Elongation factor Tu domain 2 KD35_23330 PF00679 Elongation factor G C-terminus KD35_23330 PF00009 Elongation factor Tu GTP binding domain KD35_23330 PF06421 GTP-binding protein LepA C-terminus KD35_23340 PF03418 Germination protease KD35_23345 PF01649 Ribosomal protein S20 KD35_23350 PF06144 DNA polymerase III, delta subunit KD35_23355 PF14141 YqzM-like protein KD35_23360 PF00753 Metallo-beta-lactamase superfamily KD35_23360 PF13567 Domain of unknown function (DUF4131) KD35_23360 PF03772 Competence protein KD35_23365 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KD35_23370 PF10531 SLBB domain KD35_23375 PF03807 NADP oxidoreductase coenzyme F420-dependent KD35_23375 PF14748 Pyrroline-5-carboxylate reductase dimerisation KD35_23380 PF13649 Methyltransferase domain KD35_23390 PF01966 HD domain KD35_23395 PF01467 Cytidylyltransferase-like KD35_23400 PF01985 CRS1 / YhbY (CRM) domain KD35_23405 PF08501 Shikimate dehydrogenase substrate binding domain KD35_23405 PF18317 Shikimate 5'-dehydrogenase C-terminal domain KD35_23405 PF01488 Shikimate / quinate 5-dehydrogenase KD35_23410 PF01926 50S ribosome-binding GTPase KD35_23425 PF02666 Phosphatidylserine decarboxylase KD35_23430 PF04542 Sigma-70 region 2 KD35_23430 PF04545 Sigma-70, region 4 KD35_23440 PF16244 Domain of unknown function (DUF4901) KD35_23445 PF00471 Ribosomal protein L33 KD35_23450 PF00881 Nitroreductase family KD35_23455 PF04607 Region found in RelA / SpoT proteins KD35_23465 PF00245 Alkaline phosphatase KD35_23475 PF08386 TAP-like protein KD35_23475 PF00561 alpha/beta hydrolase fold KD35_23510 PF05922 Peptidase inhibitor I9 KD35_23510 PF02225 PA domain KD35_23510 PF00082 Subtilase family KD35_23510 PF13860 FlgD Ig-like domain KD35_23515 PF00351 Biopterin-dependent aromatic amino acid hydroxylase KD35_23525 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KD35_23530 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KD35_23535 PF07681 DoxX KD35_23565 PF00005 ABC transporter KD35_23570 PF01032 FecCD transport family KD35_23575 PF01497 Periplasmic binding protein KD35_23580 PF14143 YrhC-like protein KD35_23585 PF00465 Iron-containing alcohol dehydrogenase KD35_23585 PF00171 Aldehyde dehydrogenase family KD35_23590 PF01053 Cys/Met metabolism PLP-dependent enzyme KD35_23595 PF00291 Pyridoxal-phosphate dependent enzyme KD35_23600 PF01048 Phosphorylase superfamily KD35_23605 PF08241 Methyltransferase domain KD35_23620 PF00905 Penicillin binding protein transpeptidase domain KD35_23620 PF03717 Penicillin-binding Protein dimerisation domain KD35_23625 PF03449 Transcription elongation factor, N-terminal KD35_23625 PF01272 Transcription elongation factor, GreA/GreB, C-term KD35_23630 PF00485 Phosphoribulokinase / Uridine kinase family KD35_23650 PF02618 YceG-like family KD35_23655 PF06949 Protein of unknown function (DUF1292) KD35_23660 PF03652 Holliday junction resolvase KD35_23665 PF06135 IreB regulatory phosphoprotein KD35_23670 PF01411 tRNA synthetases class II (A) KD35_23670 PF02272 DHHA1 domain KD35_23670 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KD35_23680 PF01594 AI-2E family transporter KD35_23700 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain KD35_23700 PF14490 Helix-hairpin-helix containing domain KD35_23700 PF13538 UvrD-like helicase C-terminal domain KD35_23715 PF00266 Aminotransferase class-V KD35_23720 PF02082 Transcriptional regulator KD35_23725 PF16193 AAA C-terminal domain KD35_23725 PF12002 MgsA AAA+ ATPase C terminal KD35_23725 PF05496 Holliday junction DNA helicase RuvB P-loop domain KD35_23735 PF00899 ThiF family KD35_23740 PF02938 GAD domain KD35_23740 PF00152 tRNA synthetases class II (D, K and N) KD35_23740 PF01336 OB-fold nucleic acid binding domain KD35_23745 PF03129 Anticodon binding domain KD35_23745 PF13393 Histidyl-tRNA synthetase KD35_23755 PF02580 D-Tyr-tRNA(Tyr) deacylase KD35_23760 PF04607 Region found in RelA / SpoT proteins KD35_23760 PF02824 TGS domain KD35_23760 PF13291 ACT domain KD35_23765 PF00156 Phosphoribosyl transferase domain KD35_23770 PF10141 Single-strand DNA-specific exonuclease, C terminal domain KD35_23770 PF17768 RecJ OB domain KD35_23770 PF02272 DHHA1 domain KD35_23770 PF01368 DHH family KD35_23775 PF01545 Cation efflux family KD35_23775 PF16916 Dimerisation domain of Zinc Transporter KD35_23780 PF02355 Protein export membrane protein KD35_23780 PF07549 SecD/SecF GG Motif KD35_23785 PF13797 Post-transcriptional regulator KD35_23790 PF14667 Polysaccharide biosynthesis C-terminal domain KD35_23790 PF01943 Polysaccharide biosynthesis protein KD35_23795 PF04239 Protein of unknown function (DUF421) KD35_23805 PF02699 Preprotein translocase subunit KD35_23810 PF01702 Queuine tRNA-ribosyltransferase KD35_23815 PF02547 Queuosine biosynthesis protein KD35_23820 PF11146 Protein of unknown function (DUF2905) KD35_23825 PF05491 RuvB C-terminal winged helix domain KD35_23825 PF05496 Holliday junction DNA helicase RuvB P-loop domain KD35_23825 PF17864 RuvB AAA lid domain KD35_23830 PF07499 RuvA, C-terminal domain KD35_23830 PF01330 RuvA N terminal domain KD35_23835 PF01497 Periplasmic binding protein KD35_23845 PF00892 EamA-like transporter family KD35_23850 PF00892 EamA-like transporter family KD35_23855 PF01022 Bacterial regulatory protein, arsR family KD35_23870 PF01476 LysM domain KD35_23875 PF02445 Quinolinate synthetase A protein KD35_23880 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain KD35_23880 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain KD35_23885 PF02910 Fumarate reductase flavoprotein C-term KD35_23885 PF00890 FAD binding domain KD35_23890 PF00266 Aminotransferase class-V KD35_23895 PF02829 3H domain KD35_23895 PF08279 HTH domain KD35_23900 PF03475 3-alpha domain KD35_23900 PF03473 MOSC domain KD35_23905 PF01842 ACT domain KD35_23905 PF00800 Prephenate dehydratase KD35_23910 PF02687 FtsX-like permease family KD35_23915 PF02687 FtsX-like permease family KD35_23920 PF00005 ABC transporter KD35_23925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_23935 PF00486 Transcriptional regulatory protein, C terminal KD35_23935 PF00072 Response regulator receiver domain KD35_23940 PF01018 GTP1/OBG KD35_23940 PF01926 50S ribosome-binding GTPase KD35_23940 PF09269 Domain of unknown function (DUF1967) KD35_23945 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain KD35_23945 PF14682 Sporulation initiation phospho-transferase B, C-terminal KD35_23950 PF01016 Ribosomal L27 protein KD35_23955 PF04327 Cysteine protease Prp KD35_23960 PF00829 Ribosomal prokaryotic L21 protein KD35_23965 PF10150 Ribonuclease E/G family KD35_23965 PF00575 S1 RNA binding domain KD35_23970 PF02163 Peptidase family M50 KD35_23975 PF01551 Peptidase family M23 KD35_23980 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain KD35_23985 PF03775 Septum formation inhibitor MinC, C-terminal domain KD35_23995 PF04085 rod shape-determining protein MreC KD35_24005 PF04002 RadC-like JAB domain KD35_24010 PF02545 Maf-like protein KD35_24020 PF02875 Mur ligase family, glutamate ligase domain KD35_24020 PF08245 Mur ligase middle domain KD35_24025 PF00133 tRNA synthetases class I (I, L, M and V) KD35_24025 PF08264 Anticodon-binding domain of tRNA KD35_24025 PF10458 Valyl tRNA synthetase tRNA binding arm KD35_24035 PF01476 LysM domain KD35_24040 PF00202 Aminotransferase class-III KD35_24045 PF00490 Delta-aminolevulinic acid dehydratase KD35_24050 PF02602 Uroporphyrinogen-III synthase HemD KD35_24055 PF03900 Porphobilinogen deaminase, C-terminal domain KD35_24055 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain KD35_24060 PF01578 Cytochrome C assembly protein KD35_24065 PF01488 Shikimate / quinate 5-dehydrogenase KD35_24065 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain KD35_24065 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain KD35_24070 PF01047 MarR family KD35_24075 PF02566 OsmC-like protein KD35_24080 PF01926 50S ribosome-binding GTPase KD35_24085 PF02190 ATP-dependent protease La (LON) substrate-binding domain KD35_24085 PF00004 ATPase family associated with various cellular activities (AAA) KD35_24085 PF05362 Lon protease (S16) C-terminal proteolytic domain KD35_24090 PF05362 Lon protease (S16) C-terminal proteolytic domain KD35_24090 PF00004 ATPase family associated with various cellular activities (AAA) KD35_24095 PF07724 AAA domain (Cdc48 subfamily) KD35_24095 PF10431 C-terminal, D2-small domain, of ClpB protein KD35_24095 PF06689 ClpX C4-type zinc finger KD35_24100 PF05697 Bacterial trigger factor protein (TF) KD35_24100 PF05698 Bacterial trigger factor protein (TF) C-terminus KD35_24100 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KD35_24120 PF08000 Bacterial PH domain KD35_24120 PF11724 YvbH-like oligomerisation region KD35_24140 PF12850 Calcineurin-like phosphoesterase superfamily domain KD35_24145 PF01725 Ham1 family KD35_24150 PF03725 3' exoribonuclease family, domain 2 KD35_24150 PF01138 3' exoribonuclease family, domain 1 KD35_24155 PF10646 Sporulation and spore germination KD35_24160 PF01177 Asp/Glu/Hydantoin racemase KD35_24165 PF07690 Major Facilitator Superfamily KD35_24175 PF00440 Bacterial regulatory proteins, tetR family KD35_24190 PF00196 Bacterial regulatory proteins, luxR family KD35_24195 PF00860 Permease family KD35_24205 PF07969 Amidohydrolase family KD35_24210 PF07969 Amidohydrolase family KD35_24215 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KD35_24225 PF00528 Binding-protein-dependent transport system inner membrane component KD35_24230 PF00005 ABC transporter KD35_24230 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KD35_24235 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KD35_24235 PF00005 ABC transporter KD35_24240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_24240 PF07694 5TMR of 5TMR-LYT KD35_24240 PF06580 Histidine kinase KD35_24245 PF00072 Response regulator receiver domain KD35_24245 PF04397 LytTr DNA-binding domain KD35_24260 PF04024 PspC domain KD35_24265 PF01381 Helix-turn-helix KD35_24265 PF07883 Cupin domain KD35_24270 PF13536 Putative multidrug resistance efflux transporter KD35_24275 PF00230 Major intrinsic protein KD35_24280 PF02082 Transcriptional regulator KD35_24290 PF13732 Domain of unknown function (DUF4162) KD35_24290 PF00005 ABC transporter KD35_24295 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) KD35_24305 PF01618 MotA/TolQ/ExbB proton channel family KD35_24310 PF02557 D-alanyl-D-alanine carboxypeptidase KD35_24315 PF03061 Thioesterase superfamily KD35_24320 PF13085 2Fe-2S iron-sulfur cluster binding domain KD35_24320 PF13183 4Fe-4S dicluster domain KD35_24325 PF02910 Fumarate reductase flavoprotein C-term KD35_24325 PF00890 FAD binding domain KD35_24330 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KD35_24335 PF10702 Protein of unknown function (DUF2507) KD35_24340 PF01541 GIY-YIG catalytic domain KD35_24340 PF02151 UvrB/uvrC motif KD35_24340 PF08459 UvrC Helix-hairpin-helix N-terminal KD35_24345 PF00085 Thioredoxin KD35_24350 PF00766 Electron transfer flavoprotein FAD-binding domain KD35_24350 PF01012 Electron transfer flavoprotein domain KD35_24355 PF01012 Electron transfer flavoprotein domain KD35_24360 PF00378 Enoyl-CoA hydratase/isomerase KD35_24365 PF00440 Bacterial regulatory proteins, tetR family KD35_24365 PF08359 YsiA-like protein, C-terminal region KD35_24370 PF00501 AMP-binding enzyme KD35_24370 PF13193 AMP-binding enzyme C-terminal domain KD35_24380 PF01497 Periplasmic binding protein KD35_24385 PF01032 FecCD transport family KD35_24390 PF05163 DinB family KD35_24420 PF00005 ABC transporter KD35_24425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_24425 PF00512 His Kinase A (phospho-acceptor) domain KD35_24430 PF00486 Transcriptional regulatory protein, C terminal KD35_24430 PF00072 Response regulator receiver domain KD35_24440 PF09962 Uncharacterized conserved protein (DUF2196) KD35_24445 PF10672 S-adenosylmethionine-dependent methyltransferase KD35_24445 PF17785 PUA-like domain KD35_24455 PF03992 Antibiotic biosynthesis monooxygenase KD35_24460 PF04203 Sortase domain KD35_24465 PF00005 ABC transporter KD35_24470 PF01032 FecCD transport family KD35_24475 PF01497 Periplasmic binding protein KD35_24480 PF05031 Iron Transport-associated domain KD35_24490 PF05031 Iron Transport-associated domain KD35_24495 PF05525 Branched-chain amino acid transport protein KD35_24500 PF01479 S4 domain KD35_24500 PF00849 RNA pseudouridylate synthase KD35_24510 PF00488 MutS domain V KD35_24510 PF01713 Smr domain KD35_24515 PF02811 PHP domain KD35_24515 PF14716 Helix-hairpin-helix domain KD35_24515 PF14791 DNA polymerase beta thumb KD35_24520 PF02674 Colicin V production protein KD35_24525 PF05164 Cell division protein ZapA KD35_24530 PF11858 Domain of unknown function (DUF3378) KD35_24530 PF01351 Ribonuclease HII KD35_24550 PF01336 OB-fold nucleic acid binding domain KD35_24550 PF00152 tRNA synthetases class II (D, K and N) KD35_24555 PF03147 Ferredoxin-fold anticodon binding domain KD35_24555 PF03484 tRNA synthetase B5 domain KD35_24555 PF03483 B3/4 domain KD35_24555 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain KD35_24555 PF01588 Putative tRNA binding domain KD35_24560 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain KD35_24560 PF01409 tRNA synthetases class II core domain (F) KD35_24565 PF00588 SpoU rRNA Methylase family KD35_24565 PF08032 RNA 2'-O ribose methyltransferase substrate binding KD35_24570 PF14098 Small, acid-soluble spore protein I KD35_24575 PF01966 HD domain KD35_24600 PF07690 Major Facilitator Superfamily KD35_24610 PF00440 Bacterial regulatory proteins, tetR family KD35_24610 PF16859 Tetracyclin repressor-like, C-terminal domain KD35_24615 PF05343 M42 glutamyl aminopeptidase KD35_24625 PF00453 Ribosomal protein L20 KD35_24630 PF01632 Ribosomal protein L35 KD35_24635 PF00707 Translation initiation factor IF-3, C-terminal domain KD35_24635 PF05198 Translation initiation factor IF-3, N-terminal domain KD35_24640 PF02824 TGS domain KD35_24640 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KD35_24640 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KD35_24640 PF03129 Anticodon binding domain KD35_24645 PF08812 YtxC-like family KD35_24650 PF01695 IstB-like ATP binding protein KD35_24650 PF07319 Primosomal protein DnaI N-terminus KD35_24655 PF07261 Replication initiation and membrane attachment KD35_24660 PF03477 ATP cone domain KD35_24665 PF02675 S-adenosylmethionine decarboxylase KD35_24670 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KD35_24670 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KD35_24675 PF01121 Dephospho-CoA kinase KD35_24680 PF02659 Putative manganese efflux pump KD35_24685 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain KD35_24685 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain KD35_24685 PF06827 Zinc finger found in FPG and IleRS KD35_24690 PF01367 5'-3' exonuclease, C-terminal SAM fold KD35_24690 PF00476 DNA polymerase family A KD35_24690 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KD35_24695 PF16736 Single Cache-like KD35_24695 PF00989 PAS fold KD35_24695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_24695 PF00512 His Kinase A (phospho-acceptor) domain KD35_24700 PF00486 Transcriptional regulatory protein, C terminal KD35_24700 PF00072 Response regulator receiver domain KD35_24715 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KD35_24715 PF00056 lactate/malate dehydrogenase, NAD binding domain KD35_24720 PF00180 Isocitrate/isopropylmalate dehydrogenase KD35_24725 PF00285 Citrate synthase, C-terminal domain KD35_24735 PF04284 Protein of unknown function (DUF441) KD35_24740 PF01594 AI-2E family transporter KD35_24745 PF04186 FxsA cytoplasmic membrane protein KD35_24750 PF00224 Pyruvate kinase, barrel domain KD35_24750 PF00391 PEP-utilising enzyme, mobile domain KD35_24750 PF02887 Pyruvate kinase, alpha/beta domain KD35_24755 PF00365 Phosphofructokinase KD35_24760 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit KD35_24765 PF01039 Carboxyl transferase domain KD35_24765 PF17848 Acetyl-coA carboxylase zinc finger domain KD35_24770 PF00392 Bacterial regulatory proteins, gntR family KD35_24775 PF00390 Malic enzyme, N-terminal domain KD35_24775 PF03949 Malic enzyme, NAD binding domain KD35_24780 PF07733 Bacterial DNA polymerase III alpha NTPase domain KD35_24780 PF02811 PHP domain KD35_24780 PF14579 Helix-hairpin-helix motif KD35_24780 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KD35_24780 PF01336 OB-fold nucleic acid binding domain KD35_24785 PF14034 Sporulation protein YtrH KD35_24795 PF02272 DHHA1 domain KD35_24795 PF01368 DHH family KD35_24800 PF14007 YtpI-like protein KD35_24815 PF00571 CBS domain KD35_24815 PF00392 Bacterial regulatory proteins, gntR family KD35_24815 PF07085 DRTGG domain KD35_24815 PF03061 Thioesterase superfamily KD35_24830 PF00557 Metallopeptidase family M24 KD35_24830 PF01321 Creatinase/Prolidase N-terminal domain KD35_24835 PF11518 Protein of unknown function (DUF3221) KD35_24865 PF12746 GNAT acetyltransferase KD35_24870 PF07883 Cupin domain KD35_24880 PF01381 Helix-turn-helix KD35_24890 PF05222 Alanine dehydrogenase/PNT, N-terminal domain KD35_24890 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KD35_24900 PF00582 Universal stress protein family KD35_24920 PF00206 Lyase KD35_24920 PF14698 Argininosuccinate lyase C-terminal KD35_24925 PF00764 Arginosuccinate synthase KD35_24940 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KD35_24940 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KD35_24945 PF12787 EcsC protein family KD35_24960 PF00871 Acetokinase family KD35_24965 PF02384 N-6 DNA Methylase KD35_24970 PF08534 Redoxin KD35_24975 PF09579 Sporulation protein YtfJ (Spore_YtfJ) KD35_24985 PF01513 ATP-NAD kinase KD35_24990 PF07969 Amidohydrolase family KD35_25000 PF00501 AMP-binding enzyme KD35_25000 PF13193 AMP-binding enzyme C-terminal domain KD35_25005 PF00269 Small, acid-soluble spore proteins, alpha/beta type KD35_25010 PF02926 THUMP domain KD35_25010 PF02568 Thiamine biosynthesis protein (ThiI) KD35_25015 PF00266 Aminotransferase class-V KD35_25020 PF06160 Septation ring formation regulator, EzrA KD35_25025 PF03466 LysR substrate binding domain KD35_25025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KD35_25030 PF00892 EamA-like transporter family KD35_25040 PF13185 GAF domain KD35_25045 PF01053 Cys/Met metabolism PLP-dependent enzyme KD35_25050 PF00163 Ribosomal protein S4/S9 N-terminal domain KD35_25050 PF01479 S4 domain KD35_25065 PF01479 S4 domain KD35_25065 PF00579 tRNA synthetases class I (W and Y) KD35_25075 PF08281 Sigma-70, region 4 KD35_25075 PF04542 Sigma-70 region 2 KD35_25085 PF00501 AMP-binding enzyme KD35_25085 PF13193 AMP-binding enzyme C-terminal domain KD35_25090 PF00583 Acetyltransferase (GNAT) family KD35_25095 PF00571 CBS domain KD35_25100 PF00850 Histone deacetylase domain KD35_25110 PF00072 Response regulator receiver domain KD35_25110 PF00486 Transcriptional regulatory protein, C terminal KD35_25115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_25115 PF00672 HAMP domain KD35_25115 PF00512 His Kinase A (phospho-acceptor) domain KD35_25115 PF13426 PAS domain KD35_25120 PF12796 Ankyrin repeats (3 copies) KD35_25125 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KD35_25130 PF01741 Large-conductance mechanosensitive channel, MscL KD35_25155 PF00356 Bacterial regulatory proteins, lacI family KD35_25165 PF07537 CamS sex pheromone cAM373 precursor KD35_25170 PF11009 Protein of unknown function (DUF2847) KD35_25180 PF02073 Thermophilic metalloprotease (M29) KD35_25200 PF13302 Acetyltransferase (GNAT) domain KD35_25205 PF02875 Mur ligase family, glutamate ligase domain KD35_25205 PF08245 Mur ligase middle domain KD35_25205 PF01225 Mur ligase family, catalytic domain KD35_25215 PF09397 Ftsk gamma domain KD35_25215 PF01580 FtsK/SpoIIIE family KD35_25215 PF17854 FtsK alpha domain KD35_25225 PF14794 Domain of unknown function (DUF4479) KD35_25225 PF01588 Putative tRNA binding domain KD35_25230 PF07285 Protein of unknown function (DUF1444) KD35_25235 PF00085 Thioredoxin KD35_25240 PF01931 Protein of unknown function DUF84 KD35_25245 PF05343 M42 glutamyl aminopeptidase KD35_25255 PF00753 Metallo-beta-lactamase superfamily KD35_25260 PF02390 Putative methyltransferase KD35_25265 PF14165 YtzH-like protein KD35_25270 PF01636 Phosphotransferase enzyme family KD35_25275 PF00128 Alpha amylase, catalytic domain KD35_25275 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KD35_25275 PF17999 Pullulanase N1-terminal domain KD35_25285 PF02834 LigT like Phosphoesterase KD35_25290 PF01546 Peptidase family M20/M25/M40 KD35_25295 PF01546 Peptidase family M20/M25/M40 KD35_25300 PF08220 DeoR-like helix-turn-helix domain KD35_25305 PF01479 S4 domain KD35_25305 PF00849 RNA pseudouridylate synthase KD35_25310 PF14667 Polysaccharide biosynthesis C-terminal domain KD35_25310 PF01943 Polysaccharide biosynthesis protein KD35_25320 PF07690 Major Facilitator Superfamily KD35_25325 PF01022 Bacterial regulatory protein, arsR family KD35_25330 PF08327 Activator of Hsp90 ATPase homolog 1-like protein KD35_25340 PF10957 Sporulation protein Cse60 KD35_25350 PF02559 CarD-like/TRCF domain KD35_25360 PF06800 Sugar transport protein KD35_25375 PF02391 MoaE protein KD35_25380 PF03205 Molybdopterin guanine dinucleotide synthesis protein B KD35_25385 PF03453 MoeA N-terminal region (domain I and II) KD35_25385 PF00994 Probable molybdopterin binding domain KD35_25385 PF03454 MoeA C-terminal region (domain IV) KD35_25390 PF01967 MoaC family KD35_25395 PF00899 ThiF family KD35_25420 PF00581 Rhodanese-like domain KD35_25430 PF00561 alpha/beta hydrolase fold KD35_25435 PF03323 Bacillus/Clostridium GerA spore germination protein KD35_25440 PF03845 Spore germination protein KD35_25470 PF13603 Leucyl-tRNA synthetase, Domain 2 KD35_25470 PF08264 Anticodon-binding domain of tRNA KD35_25470 PF00133 tRNA synthetases class I (I, L, M and V) KD35_25470 PF09334 tRNA synthetases class I (M) KD35_25475 PF07690 Major Facilitator Superfamily KD35_25480 PF00999 Sodium/hydrogen exchanger family KD35_25485 PF02080 TrkA-C domain KD35_25490 PF00589 Phage integrase family KD35_25500 PF00005 ABC transporter KD35_25505 PF04235 Protein of unknown function (DUF418) KD35_25505 PF07786 Protein of unknown function (DUF1624) KD35_25515 PF10732 Protein of unknown function (DUF2524) KD35_25520 PF16199 Radical_SAM C-terminal domain KD35_25520 PF04055 Radical SAM superfamily KD35_25525 PF06962 Putative rRNA methylase KD35_25530 PF13732 Domain of unknown function (DUF4162) KD35_25530 PF00005 ABC transporter KD35_25540 PF01177 Asp/Glu/Hydantoin racemase KD35_25555 PF10776 Protein of unknown function (DUF2600) KD35_25560 PF12146 Serine aminopeptidase, S33 KD35_25565 PF00132 Bacterial transferase hexapeptide (six repeats) KD35_25570 PF01569 PAP2 superfamily KD35_25575 PF00534 Glycosyl transferases group 1 KD35_25575 PF13439 Glycosyltransferase Family 4 KD35_25580 PF12804 MobA-like NTP transferase domain KD35_25585 PF00994 Probable molybdopterin binding domain KD35_25600 PF02773 S-adenosylmethionine synthetase, C-terminal domain KD35_25600 PF02772 S-adenosylmethionine synthetase, central domain KD35_25600 PF00438 S-adenosylmethionine synthetase, N-terminal domain KD35_25605 PF01293 Phosphoenolpyruvate carboxykinase KD35_25640 PF01784 NIF3 (NGG1p interacting factor 3) KD35_25645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_25645 PF00512 His Kinase A (phospho-acceptor) domain KD35_25645 PF13188 PAS domain KD35_25645 PF13426 PAS domain KD35_25645 PF00989 PAS fold KD35_25650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_25650 PF08447 PAS fold KD35_25650 PF00989 PAS fold KD35_25650 PF00512 His Kinase A (phospho-acceptor) domain KD35_25655 PF00561 alpha/beta hydrolase fold KD35_25655 PF08386 TAP-like protein KD35_25680 PF00005 ABC transporter KD35_25685 PF00528 Binding-protein-dependent transport system inner membrane component KD35_25710 PF00293 NUDIX domain KD35_25730 PF02664 S-Ribosylhomocysteinase (LuxS) KD35_25735 PF01809 Putative membrane protein insertion efficiency factor KD35_25740 PF00484 Carbonic anhydrase KD35_25745 PF01654 Cytochrome bd terminal oxidase subunit I KD35_25750 PF02322 Cytochrome bd terminal oxidase subunit II KD35_25755 PF10676 Spore germination protein gerPA/gerPF KD35_25770 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KD35_25770 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KD35_25795 PF04012 PspA/IM30 family KD35_25815 PF07670 Nucleoside recognition KD35_25815 PF02421 Ferrous iron transport protein B KD35_25815 PF17910 FeoB cytosolic helical domain KD35_25815 PF07664 Ferrous iron transport protein B C terminus KD35_25825 PF09515 Thiamine transporter protein (Thia_YuaJ) KD35_25830 PF00512 His Kinase A (phospho-acceptor) domain KD35_25830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_25830 PF00672 HAMP domain KD35_25835 PF00072 Response regulator receiver domain KD35_25835 PF00486 Transcriptional regulatory protein, C terminal KD35_25860 PF00156 Phosphoribosyl transferase domain KD35_25865 PF00781 Diacylglycerol kinase catalytic domain KD35_25885 PF00248 Aldo/keto reductase family KD35_25900 PF09335 SNARE associated Golgi protein KD35_25905 PF00398 Ribosomal RNA adenine dimethylase KD35_25910 PF02687 FtsX-like permease family KD35_25915 PF00005 ABC transporter KD35_25920 PF12833 Helix-turn-helix domain KD35_25920 PF06445 GyrI-like small molecule binding domain KD35_25925 PF00486 Transcriptional regulatory protein, C terminal KD35_25925 PF00072 Response regulator receiver domain KD35_25935 PF02687 FtsX-like permease family KD35_25945 PF02687 FtsX-like permease family KD35_25950 PF02687 FtsX-like permease family KD35_25955 PF00005 ABC transporter KD35_25970 PF02447 GntP family permease KD35_25985 PF07071 KDGP aldolase KD35_25990 PF03841 L-seryl-tRNA selenium transferase KD35_25995 PF01979 Amidohydrolase family KD35_26010 PF02557 D-alanyl-D-alanine carboxypeptidase KD35_26015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_26015 PF00512 His Kinase A (phospho-acceptor) domain KD35_26020 PF00486 Transcriptional regulatory protein, C terminal KD35_26020 PF00072 Response regulator receiver domain KD35_26025 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KD35_26025 PF13378 Enolase C-terminal domain-like KD35_26030 PF13193 AMP-binding enzyme C-terminal domain KD35_26030 PF00501 AMP-binding enzyme KD35_26035 PF00378 Enoyl-CoA hydratase/isomerase KD35_26040 PF00561 alpha/beta hydrolase fold KD35_26045 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KD35_26045 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KD35_26045 PF16582 Middle domain of thiamine pyrophosphate KD35_26050 PF00425 chorismate binding enzyme KD35_26055 PF01040 UbiA prenyltransferase family KD35_26060 PF01258 Prokaryotic dksA/traR C4-type zinc finger KD35_26065 PF00313 'Cold-shock' DNA-binding domain KD35_26085 PF00343 Carbohydrate phosphorylase KD35_26090 PF08323 Starch synthase catalytic domain KD35_26090 PF00534 Glycosyl transferases group 1 KD35_26095 PF00483 Nucleotidyl transferase KD35_26100 PF00483 Nucleotidyl transferase KD35_26105 PF00128 Alpha amylase, catalytic domain KD35_26105 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KD35_26105 PF02806 Alpha amylase, C-terminal all-beta domain KD35_26110 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KD35_26110 PF00056 lactate/malate dehydrogenase, NAD binding domain KD35_26205 PF05697 Bacterial trigger factor protein (TF) KD35_26205 PF05698 Bacterial trigger factor protein (TF) C-terminus KD35_26240 PF02308 MgtC family KD35_26245 PF02254 TrkA-N domain KD35_26245 PF07885 Ion channel KD35_26250 PF08868 YugN-like family KD35_26255 PF00342 Phosphoglucose isomerase KD35_26265 PF04070 Domain of unknown function (DUF378) KD35_26270 PF00575 S1 RNA binding domain KD35_26275 PF00155 Aminotransferase class I and II KD35_26280 PF01037 Lrp/AsnC ligand binding domain KD35_26285 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KD35_26285 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KD35_26290 PF08386 TAP-like protein KD35_26290 PF00561 alpha/beta hydrolase fold KD35_26300 PF00155 Aminotransferase class I and II KD35_26315 PF08810 Kinase associated protein B KD35_26320 PF00929 Exonuclease KD35_26325 PF03600 Citrate transporter KD35_26340 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KD35_26340 PF03129 Anticodon binding domain KD35_26345 PF03061 Thioesterase superfamily KD35_26355 PF02632 BioY family KD35_26365 PF00483 Nucleotidyl transferase KD35_26370 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KD35_26370 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KD35_26370 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KD35_26370 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KD35_26375 PF02457 DisA bacterial checkpoint controller nucleotide-binding KD35_26375 PF10372 Bacterial membrane-spanning protein N-terminus KD35_26380 PF02789 Cytosol aminopeptidase family, N-terminal domain KD35_26380 PF00883 Cytosol aminopeptidase family, catalytic domain KD35_26385 PF06725 3D domain KD35_26395 PF00293 NUDIX domain KD35_26395 PF13344 Haloacid dehalogenase-like hydrolase KD35_26400 PF07992 Pyridine nucleotide-disulphide oxidoreductase KD35_26405 PF07992 Pyridine nucleotide-disulphide oxidoreductase KD35_26415 PF06445 GyrI-like small molecule binding domain KD35_26430 PF04463 Protein of unknown function (DUF523) KD35_26450 PF01521 Iron-sulphur cluster biosynthesis KD35_26455 PF01678 Diaminopimelate epimerase KD35_26460 PF07293 Protein of unknown function (DUF1450) KD35_26465 PF07992 Pyridine nucleotide-disulphide oxidoreductase KD35_26475 PF09383 NIL domain KD35_26475 PF00005 ABC transporter KD35_26480 PF03649 Uncharacterised protein family (UPF0014) KD35_26485 PF08274 PhnA Zinc-Ribbon KD35_26485 PF03831 PhnA domain KD35_26525 PF07315 Protein of unknown function (DUF1462) KD35_26530 PF01106 NifU-like domain KD35_26545 PF04608 Phosphatidylglycerophosphatase A KD35_26560 PF02525 Flavodoxin-like fold KD35_26565 PF13344 Haloacid dehalogenase-like hydrolase KD35_26575 PF01934 Protein of unknown function DUF86 KD35_26580 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded KD35_26600 PF06265 Protein of unknown function (DUF1027) KD35_26605 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) KD35_26610 PF07739 TipAS antibiotic-recognition domain KD35_26610 PF13411 MerR HTH family regulatory protein KD35_26615 PF10086 YhfC intramembrane metalloprotease KD35_26635 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family KD35_26635 PF04055 Radical SAM superfamily KD35_26640 PF01551 Peptidase family M23 KD35_26650 PF08827 Domain of unknown function (DUF1805) KD35_26655 PF02872 5'-nucleotidase, C-terminal domain KD35_26665 PF03551 Transcriptional regulator PadR-like family KD35_26670 PF04892 VanZ like family KD35_26680 PF01458 Uncharacterized protein family (UPF0051) KD35_26685 PF01592 NifU-like N terminal domain KD35_26690 PF00266 Aminotransferase class-V KD35_26695 PF01458 Uncharacterized protein family (UPF0051) KD35_26700 PF00005 ABC transporter KD35_26705 PF03180 NLPA lipoprotein KD35_26710 PF03180 NLPA lipoprotein KD35_26715 PF00528 Binding-protein-dependent transport system inner membrane component KD35_26720 PF00005 ABC transporter KD35_26720 PF09383 NIL domain KD35_26735 PF00085 Thioredoxin KD35_26740 PF01751 Toprim domain KD35_26745 PF01597 Glycine cleavage H-protein KD35_26750 PF03960 ArsC family KD35_26800 PF00056 lactate/malate dehydrogenase, NAD binding domain KD35_26800 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KD35_26825 PF13305 Tetracyclin repressor-like, C-terminal domain KD35_26825 PF00440 Bacterial regulatory proteins, tetR family KD35_26830 PF00753 Metallo-beta-lactamase superfamily KD35_26835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KD35_26835 PF02770 Acyl-CoA dehydrogenase, middle domain KD35_26835 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KD35_26845 PF00108 Thiolase, N-terminal domain KD35_26845 PF02803 Thiolase, C-terminal domain KD35_26850 PF00378 Enoyl-CoA hydratase/isomerase KD35_26850 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KD35_26850 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KD35_26855 PF14115 YuzL-like protein KD35_26860 PF00768 D-alanyl-D-alanine carboxypeptidase KD35_26860 PF07943 Penicillin-binding protein 5, C-terminal domain KD35_26865 PF01619 Proline dehydrogenase KD35_26870 PF10835 Protein of unknown function (DUF2573) KD35_26875 PF01910 Thiamine-binding protein KD35_26880 PF02743 Cache domain KD35_26880 PF00672 HAMP domain KD35_26880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KD35_26900 PF07690 Major Facilitator Superfamily KD35_26905 PF13520 Amino acid permease KD35_26915 PF02096 60Kd inner membrane protein KD35_26925 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KD35_26925 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KD35_26960 PF09335 SNARE associated Golgi protein KD35_26970 PF17969 L,D-transpeptidase C-terminal domain KD35_26970 PF03734 L,D-transpeptidase catalytic domain KD35_26975 PF00072 Response regulator receiver domain KD35_26975 PF00486 Transcriptional regulatory protein, C terminal KD35_26980 PF16736 Single Cache-like KD35_26980 PF00989 PAS fold KD35_26980 PF00512 His Kinase A (phospho-acceptor) domain KD35_26980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KD35_26990 PF08264 Anticodon-binding domain of tRNA KD35_26990 PF09334 tRNA synthetases class I (M) KD35_27000 PF00672 HAMP domain KD35_27000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KD35_27000 PF02743 Cache domain KD35_27005 PF01883 Iron-sulfur cluster assembly protein KD35_27010 PF03413 Peptidase propeptide and YPEB domain KD35_27010 PF01447 Thermolysin metallopeptidase, catalytic domain KD35_27010 PF02868 Thermolysin metallopeptidase, alpha-helical domain KD35_27010 PF07504 Fungalysin/Thermolysin Propeptide Motif KD35_27015 PF02678 Pirin KD35_27015 PF17954 Quercetinase C-terminal cupin domain KD35_27020 PF01047 MarR family KD35_27030 PF00999 Sodium/hydrogen exchanger family KD35_27035 PF02080 TrkA-C domain KD35_27045 PF01235 Sodium:alanine symporter family KD35_27050 PF00210 Ferritin-like domain KD35_27065 PF03641 Possible lysine decarboxylase KD35_27075 PF00210 Ferritin-like domain KD35_27080 PF04235 Protein of unknown function (DUF418) KD35_27090 PF07662 Na+ dependent nucleoside transporter C-terminus KD35_27090 PF01773 Na+ dependent nucleoside transporter N-terminus KD35_27095 PF07662 Na+ dependent nucleoside transporter C-terminus KD35_27095 PF01773 Na+ dependent nucleoside transporter N-terminus KD35_27100 PF01235 Sodium:alanine symporter family KD35_27105 PF01235 Sodium:alanine symporter family KD35_27110 PF13460 NAD(P)H-binding KD35_27125 PF00248 Aldo/keto reductase family KD35_27130 PF07690 Major Facilitator Superfamily KD35_27135 PF01638 HxlR-like helix-turn-helix KD35_27140 PF07849 Protein of unknown function (DUF1641) KD35_27145 PF07992 Pyridine nucleotide-disulphide oxidoreductase KD35_27150 PF00579 tRNA synthetases class I (W and Y) KD35_27150 PF01479 S4 domain KD35_27155 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain KD35_27155 PF01565 FAD binding domain KD35_27165 PF00672 HAMP domain KD35_27165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KD35_27165 PF17202 Single cache domain 3 KD35_27175 PF02537 CrcB-like protein, Camphor Resistance (CrcB) KD35_27180 PF02537 CrcB-like protein, Camphor Resistance (CrcB) KD35_27195 PF13302 Acetyltransferase (GNAT) domain KD35_27200 PF06146 Phosphate-starvation-inducible E KD35_27215 PF00005 ABC transporter KD35_27220 PF01032 FecCD transport family KD35_27225 PF01032 FecCD transport family KD35_27235 PF00072 Response regulator receiver domain KD35_27235 PF00486 Transcriptional regulatory protein, C terminal KD35_27240 PF01668 SmpB protein KD35_27245 PF08206 Ribonuclease B OB domain KD35_27245 PF00575 S1 RNA binding domain KD35_27245 PF00773 RNB domain KD35_27245 PF17876 Cold shock domain KD35_27250 PF12146 Serine aminopeptidase, S33 KD35_27255 PF03840 Preprotein translocase SecG subunit KD35_27260 PF04172 LrgB-like family KD35_27265 PF03788 LrgA family KD35_27270 PF01156 Inosine-uridine preferring nucleoside hydrolase KD35_27360 PF04860 Phage portal protein KD35_27385 PF00589 Phage integrase family KD35_27385 PF02899 Phage integrase, N-terminal SAM-like domain KD35_27390 PF03952 Enolase, N-terminal domain KD35_27390 PF00113 Enolase, C-terminal TIM barrel domain KD35_27395 PF06415 BPG-independent PGAM N-terminus (iPGM_N) KD35_27395 PF01676 Metalloenzyme superfamily KD35_27400 PF00121 Triosephosphate isomerase KD35_27405 PF00162 Phosphoglycerate kinase KD35_27410 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KD35_27410 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KD35_27415 PF04198 Putative sugar-binding domain KD35_27425 PF04552 Sigma-54, DNA binding domain KD35_27425 PF04963 Sigma-54 factor, core binding domain KD35_27425 PF00309 Sigma-54 factor, Activator interacting domain (AID) KD35_27445 PF03862 SpoVAC/SpoVAEB sporulation membrane protein KD35_27450 PF07451 Stage V sporulation protein AD (SpoVAD) KD35_27455 PF03862 SpoVAC/SpoVAEB sporulation membrane protein KD35_27465 PF04239 Protein of unknown function (DUF421) KD35_27470 PF00574 Clp protease KD35_27475 PF00381 PTS HPr component phosphorylation site KD35_27480 PF14527 WhiA LAGLIDADG-like domain KD35_27480 PF10298 WhiA N-terminal LAGLIDADG-like domain KD35_27480 PF02650 WhiA C-terminal HTH domain KD35_27485 PF01933 Uncharacterised protein family UPF0052 KD35_27490 PF03668 P-loop ATPase protein family KD35_27495 PF00293 NUDIX domain KD35_27505 PF07992 Pyridine nucleotide-disulphide oxidoreductase KD35_27515 PF14602 Hexapeptide repeat of succinyl-transferase KD35_27520 PF13419 Haloacid dehalogenase-like hydrolase KD35_27525 PF01790 Prolipoprotein diacylglyceryl transferase KD35_27530 PF07475 HPr Serine kinase C-terminal domain KD35_27530 PF02603 HPr Serine kinase N terminus KD35_27535 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV KD35_27545 PF00005 ABC transporter KD35_27545 PF17755 UvrA DNA-binding domain KD35_27545 PF17760 UvrA interaction domain KD35_27550 PF02151 UvrB/uvrC motif KD35_27550 PF00271 Helicase conserved C-terminal domain KD35_27550 PF04851 Type III restriction enzyme, res subunit KD35_27550 PF17757 UvrB interaction domain KD35_27550 PF12344 Ultra-violet resistance protein B KD35_27555 PF07282 Putative transposase DNA-binding domain KD35_27555 PF01385 Probable transposase KD35_27555 PF12323 Helix-turn-helix domain KD35_27570 PF13411 MerR HTH family regulatory protein KD35_27570 PF07739 TipAS antibiotic-recognition domain KD35_27595 PF03601 Conserved hypothetical protein 698 KD35_27600 PF03466 LysR substrate binding domain KD35_27600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KD35_27605 PF09278 MerR, DNA binding KD35_27605 PF00376 MerR family regulatory protein KD35_27610 PF03358 NADPH-dependent FMN reductase KD35_27620 PF01906 Putative heavy-metal-binding KD35_27625 PF00005 ABC transporter KD35_27625 PF00664 ABC transporter transmembrane region KD35_27630 PF17820 PDZ domain KD35_27635 PF01471 Putative peptidoglycan binding domain KD35_27635 PF03572 Peptidase family S41 KD35_27635 PF17820 PDZ domain KD35_27640 PF18075 FtsX extracellular domain KD35_27640 PF02687 FtsX-like permease family KD35_27645 PF00005 ABC transporter KD35_27650 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KD35_27660 PF03462 PCRF domain KD35_27660 PF00472 RF-1 domain KD35_27665 PF07517 SecA DEAD-like domain KD35_27665 PF07516 SecA Wing and Scaffold domain KD35_27665 PF02810 SEC-C motif KD35_27665 PF01043 SecA preprotein cross-linking domain KD35_27670 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus KD35_27670 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein KD35_27675 PF00313 'Cold-shock' DNA-binding domain KD35_27685 PF04851 Type III restriction enzyme, res subunit KD35_27685 PF00271 Helicase conserved C-terminal domain KD35_27690 PF00877 NlpC/P60 family KD35_27690 PF01476 LysM domain KD35_27695 PF01638 HxlR-like helix-turn-helix KD35_27705 PF02645 Uncharacterised protein, DegV family COG1307 KD35_27710 PF09186 Domain of unknown function (DUF1949) KD35_27710 PF01205 Uncharacterized protein family UPF0029 KD35_27715 PF03816 Cell envelope-related transcriptional attenuator domain KD35_27720 PF02350 UDP-N-acetylglucosamine 2-epimerase KD35_27725 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KD35_27725 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KD35_27725 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KD35_27730 PF00953 Glycosyl transferase family 4 KD35_27740 PF00874 PRD domain KD35_27740 PF00158 Sigma-54 interaction domain KD35_27740 PF03610 PTS system fructose IIA component KD35_27750 PF02417 Chromate transporter KD35_27755 PF04794 YdjC-like protein KD35_27760 PF11975 Family 4 glycosyl hydrolase C-terminal domain KD35_27760 PF02056 Family 4 glycosyl hydrolase KD35_27765 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit KD35_27770 PF02378 Phosphotransferase system, EIIC KD35_27775 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KD35_27785 PF02675 S-adenosylmethionine decarboxylase KD35_27790 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit KD35_27795 PF02378 Phosphotransferase system, EIIC KD35_27800 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KD35_27805 PF00375 Sodium:dicarboxylate symporter family KD35_27815 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KD35_27825 PF03466 LysR substrate binding domain KD35_27825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KD35_27845 PF08378 Nuclease-related domain KD35_27880 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) KD35_27960 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) KD35_28050 PF01609 Transposase DDE domain KD35_28080 PF01580 FtsK/SpoIIIE family KD35_28080 PF09397 Ftsk gamma domain KD35_28080 PF17854 FtsK alpha domain KD35_28080 PF13491 4TM region of DNA translocase FtsK/SpoIIIE KD35_28170 PF00437 Type II/IV secretion system protein KD35_28290 PF10087 Uncharacterized protein conserved in bacteria (DUF2325) KD35_28305 PF04235 Protein of unknown function (DUF418) KD35_28330 PF00395 S-layer homology domain KD35_28335 PF01569 PAP2 superfamily KD35_28355 PF00535 Glycosyl transferase family 2 KD35_28360 PF00483 Nucleotidyl transferase KD35_28365 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KD35_28365 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KD35_28365 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KD35_28380 PF13333 Integrase core domain KD35_28380 PF00665 Integrase core domain KD35_28380 PF13276 HTH-like domain KD35_28415 PF07737 Anthrax toxin lethal factor, N- and C-terminal domain KD35_28415 PF03497 Anthrax toxin LF subunit KD35_28420 PF00156 Phosphoribosyl transferase domain KD35_28425 PF00156 Phosphoribosyl transferase domain KD35_28440 PF05043 Mga helix-turn-helix domain KD35_28440 PF00874 PRD domain KD35_28440 PF08279 HTH domain KD35_28445 PF09385 Histidine kinase N terminal KD35_28460 PF01526 Tn3 transposase DDE domain KD35_28460 PF13700 Domain of unknown function (DUF4158) KD35_28465 PF00239 Resolvase, N terminal domain KD35_28465 PF02796 Helix-turn-helix domain of resolvase KD35_28470 PF03845 Spore germination protein KD35_28475 PF03323 Bacillus/Clostridium GerA spore germination protein KD35_28480 PF05504 Spore germination B3/ GerAC like, C-terminal KD35_28490 PF07691 PA14 domain KD35_28490 PF17476 Clostridial binary toxin B/anthrax toxin PA domain 3 KD35_28490 PF17475 Clostridial binary toxin B/anthrax toxin PA domain 2 KD35_28490 PF03495 Clostridial binary toxin B/anthrax toxin PA Ca-binding domain KD35_28495 PF01022 Bacterial regulatory protein, arsR family KD35_28515 PF09156 Anthrax toxin lethal factor, middle domain KD35_28515 PF07737 Anthrax toxin lethal factor, N- and C-terminal domain KD35_28535 PF18277 AbrB C-terminal domain KD35_28535 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin KD35_28545 PF02899 Phage integrase, N-terminal SAM-like domain KD35_28545 PF00589 Phage integrase family KD35_28575 PF04740 LXG domain of WXG superfamily KD35_28575 PF14436 Bacterial EndoU nuclease KD35_28585 PF13333 Integrase core domain KD35_28585 PF00665 Integrase core domain KD35_28585 PF13276 HTH-like domain KD35_28605 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment KD35_28615 PF00589 Phage integrase family KD35_28640 PF18801 response regulator aspartate phosphatase H, N terminal KD35_28645 PF17209 Hfq protein KD35_28650 PF01022 Bacterial regulatory protein, arsR family KD35_28655 PF02600 Disulfide bond formation protein DsbB KD35_28670 PF00565 Staphylococcal nuclease homologue KD35_28680 PF13342 C-terminal repeat of topoisomerase KD35_28680 PF01751 Toprim domain KD35_28680 PF01131 DNA topoisomerase KD35_28715 PF17632 Family of unknown function (DUF5513) KD35_28725 PF00877 NlpC/P60 family KD35_28770 PF04956 TrbC/VIRB2 family KD35_28795 PF00437 Type II/IV secretion system protein KD35_28830 PF17631 Family of unknown function (DUF5512) KD35_28845 PF17362 Family of unknown function KD35_28865 PF08708 Primase C terminal 1 (PriCT-1) KD35_28870 PF13614 AAA domain KD35_28885 PF01520 N-acetylmuramoyl-L-alanine amidase KD35_28885 PF00395 S-layer homology domain KD35_28890 PF13276 HTH-like domain KD35_28890 PF13333 Integrase core domain KD35_28890 PF00665 Integrase core domain KD35_28905 PF01906 Putative heavy-metal-binding KD35_28910 PF02517 CPBP intramembrane metalloprotease KD35_28915 PF04463 Protein of unknown function (DUF523) KD35_28920 PF00440 Bacterial regulatory proteins, tetR family KD35_28940 PF05043 Mga helix-turn-helix domain KD35_28940 PF08280 M protein trans-acting positive regulator (MGA) HTH domain KD35_28955 PF09587 Bacterial capsule synthesis protein PGA_cap KD35_28960 PF14102 Capsule biosynthesis CapC KD35_28965 PF08245 Mur ligase middle domain KD35_28970 PF01022 Bacterial regulatory protein, arsR family KD35_28975 PF01609 Transposase DDE domain KD35_28980 PF01609 Transposase DDE domain KD35_28985 PF01609 Transposase DDE domain KD35_28990 PF10502 Signal peptidase, peptidase S26 KD35_29000 PF09385 Histidine kinase N terminal KD35_29005 PF00874 PRD domain KD35_29005 PF05043 Mga helix-turn-helix domain KD35_29005 PF08279 HTH domain KD35_29010 PF05043 Mga helix-turn-helix domain KD35_29010 PF08279 HTH domain KD35_29010 PF00874 PRD domain KD35_29020 PF01810 LysE type translocator KD35_29030 PF00874 PRD domain KD35_29030 PF05043 Mga helix-turn-helix domain KD35_29030 PF08280 M protein trans-acting positive regulator (MGA) HTH domain KD35_29055 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KD35_29065 PF13152 Protein of unknown function (DUF3967) KD35_29065 PF13411 MerR HTH family regulatory protein KD35_29070 PF00817 impB/mucB/samB family KD35_29070 PF11799 impB/mucB/samB family C-terminal domain KD35_29070 PF11798 IMS family HHH motif KD35_29090 PF17443 Uncharacterized protein pXO2-72 KD35_29130 PF01131 DNA topoisomerase KD35_29130 PF01751 Toprim domain KD35_29135 PF01751 Toprim domain KD35_29135 PF01131 DNA topoisomerase KD35_29140 PF13154 Protein of unknown function (DUF3991) KD35_29155 PF18840 Large polyvalent protein associated domain 25 KD35_29160 PF17630 Family of unknown function (DUF5511) KD35_29165 PF17633 Family of unknown function (DUF5514)