BF25_1001 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BF25_1001 SM00534 ATPase domain of DNA mismatch repair MUTS family BF25_1002 SM00853 MutL C terminal dimerisation domain BF25_1002 SM01340 BF25_1002 BF25_1003 SM00382 ATPases associated with a variety of cellular activities BF25_1006 SM00448 cheY-homologous receiver domain BF25_1006 SM00862 Transcriptional regulatory protein, C terminal BF25_1007 SM00387 Histidine kinase-like ATPases BF25_1007 SM00388 His Kinase A (phosphoacceptor) domain BF25_1013 SM00257 Lysin motif BF25_1015 SM00148 Phospholipase C, catalytic domain (part); domain X BF25_1019 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF25_1024 SM00052 Putative diguanylate phosphodiesterase BF25_1024 SM00091 PAS domain BF25_1024 SM00267 diguanylate cyclase BF25_1031 SM00478 endonuclease III BF25_1033 SM00342 helix_turn_helix, arabinose operon control protein BF25_1039 SM00382 ATPases associated with a variety of cellular activities BF25_1045 SM00411 bacterial (prokaryotic) histone like domain BF25_1049 SM00636 BF25_1049 BF25_105 SM01329 BF25_105 BF25_1056 SM00420 helix_turn_helix, Deoxyribose operon repressor BF25_1056 SM01134 BF25_1056 BF25_1059 SM00287 Bacterial SH3 domain homologues BF25_1066 SM00382 ATPases associated with a variety of cellular activities BF25_1071 SM00422 helix_turn_helix, mercury resistance BF25_1072 SM01230 BF25_1072 BF25_1077 SM00530 Helix-turn-helix XRE-family like proteins BF25_1078 SM00530 Helix-turn-helix XRE-family like proteins BF25_1088 SM00382 ATPases associated with a variety of cellular activities BF25_109 SM00448 cheY-homologous receiver domain BF25_109 SM00862 Transcriptional regulatory protein, C terminal BF25_110 SM00091 PAS domain BF25_110 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF25_110 SM00387 Histidine kinase-like ATPases BF25_110 SM00388 His Kinase A (phosphoacceptor) domain BF25_1103 SM00530 Helix-turn-helix XRE-family like proteins BF25_111 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BF25_111 SM00474 3'-5' exonuclease BF25_111 SM00475 5'-3' exonuclease BF25_111 SM00482 DNA polymerase A domain BF25_112 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BF25_112 SM01232 BF25_112 BF25_1134 SM00287 Bacterial SH3 domain homologues BF25_1134 SM00644 BF25_1134 BF25_1140 SM00028 Tetratricopeptide repeats BF25_1146 SM00857 Resolvase, N terminal domain BF25_115 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BF25_1150 SM00062 Bacterial periplasmic substrate-binding proteins BF25_1151 SM00382 ATPases associated with a variety of cellular activities BF25_1155 SM00861 Transketolase, pyrimidine binding domain BF25_1158 SM00382 ATPases associated with a variety of cellular activities BF25_1159 SM00382 ATPases associated with a variety of cellular activities BF25_1162 SM00644 BF25_1162 BF25_1188 SM01058 CarD-like/TRCF domain BF25_119 SM00382 ATPases associated with a variety of cellular activities BF25_1194 SM00091 PAS domain BF25_1194 SM00387 Histidine kinase-like ATPases BF25_1194 SM00388 His Kinase A (phosphoacceptor) domain BF25_1197 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BF25_1198 SM00644 BF25_1198 BF25_1198 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. BF25_121 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF25_1211 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF25_1219 SM00382 ATPases associated with a variety of cellular activities BF25_1222 SM00479 BF25_1222 BF25_1226 SM00257 Lysin motif BF25_1226 SM00636 BF25_1226 BF25_1229 SM01207 BF25_1229 BF25_1232 SM00448 cheY-homologous receiver domain BF25_1232 SM00862 Transcriptional regulatory protein, C terminal BF25_1233 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF25_1234 SM00881 CoA binding domain BF25_1235 SM00387 Histidine kinase-like ATPases BF25_1235 SM00433 TopoisomeraseII BF25_1236 SM00434 DNA Topoisomerase IV BF25_1239 SM00382 ATPases associated with a variety of cellular activities BF25_1261 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BF25_1261 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BF25_1265 SM00729 Elongator protein 3, MiaB family, Radical SAM BF25_1268 SM00852 Probable molybdopterin binding domain BF25_1290 SM01022 BF25_1290 BF25_1295 SM00357 Cold shock protein domain BF25_1296 SM00479 BF25_1296 BF25_1305 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BF25_1320 SM00028 Tetratricopeptide repeats BF25_1322 SM00829 Enoylreductase BF25_1323 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF25_1336 SM00642 Alpha-amylase domain BF25_1338 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BF25_1338 SM00534 ATPase domain of DNA mismatch repair MUTS family BF25_1340 SM00855 Phosphoglycerate mutase family BF25_1341 SM00829 Enoylreductase BF25_136 SM00967 RNA 2'-O ribose methyltransferase substrate binding BF25_1367 SM00829 Enoylreductase BF25_1368 SM00849 Metallo-beta-lactamase superfamily BF25_138 SM00873 B3/4 domain BF25_138 SM00874 tRNA synthetase B5 domain BF25_138 SM00896 Ferredoxin-fold anticodon binding domain BF25_1381 SM00641 Glycosyl hydrolases family 25 BF25_1382 SM00849 Metallo-beta-lactamase superfamily BF25_1388 SM00382 ATPases associated with a variety of cellular activities BF25_1392 SM00871 Bacterial transcription activator, effector binding domain BF25_1400 SM00636 BF25_1400 BF25_1401 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF25_1402 SM00248 ankyrin repeats BF25_1415 SM00849 Metallo-beta-lactamase superfamily BF25_1423 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF25_1423 SM00866 BF25_1423 BF25_1429 SM00914 BF25_1429 BF25_1438 SM01276 BF25_1438 BF25_1441 SM00829 Enoylreductase BF25_1444 SM00829 Enoylreductase BF25_1447 SM00861 Transketolase, pyrimidine binding domain BF25_1448 SM01350 BF25_1448 BF25_1456 SM00422 helix_turn_helix, mercury resistance BF25_1457 SM01091 Transporter associated domain BF25_146 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF25_146 SM00481 DNA polymerase alpha chain like domain BF25_146 SM00483 DNA polymerase X family BF25_1462 SM00028 Tetratricopeptide repeats BF25_147 SM00463 Small MutS-related domain BF25_147 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BF25_147 SM00534 ATPase domain of DNA mismatch repair MUTS family BF25_1473 SM00382 ATPases associated with a variety of cellular activities BF25_1476 SM01266 BF25_1476 BF25_1488 SM00530 Helix-turn-helix XRE-family like proteins BF25_149 SM00363 S4 RNA-binding domain BF25_1491 SM00382 ATPases associated with a variety of cellular activities BF25_1503 SM01207 BF25_1503 BF25_1504 SM00530 Helix-turn-helix XRE-family like proteins BF25_151 SM00725 NEAr Transporter domain BF25_1513 SM00382 ATPases associated with a variety of cellular activities BF25_152 SM00725 NEAr Transporter domain BF25_1526 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF25_1528 SM00382 ATPases associated with a variety of cellular activities BF25_153 SM00725 NEAr Transporter domain BF25_1533 SM00347 helix_turn_helix multiple antibiotic resistance protein BF25_1543 SM00287 Bacterial SH3 domain homologues BF25_1546 SM00342 helix_turn_helix, arabinose operon control protein BF25_1558 SM00344 helix_turn_helix ASNC type BF25_156 SM00382 ATPases associated with a variety of cellular activities BF25_1566 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF25_1572 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BF25_1577 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF25_1577 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF25_1577 SM00319 Homologues of the ligand binding domain of Tar BF25_1584 SM00028 Tetratricopeptide repeats BF25_1585 SM00354 helix_turn _helix lactose operon repressor BF25_160 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BF25_1604 SM00347 helix_turn_helix multiple antibiotic resistance protein BF25_1606 SM00448 cheY-homologous receiver domain BF25_1606 SM00862 Transcriptional regulatory protein, C terminal BF25_1607 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF25_1607 SM00387 Histidine kinase-like ATPases BF25_1607 SM00388 His Kinase A (phosphoacceptor) domain BF25_1609 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF25_1611 SM00382 ATPases associated with a variety of cellular activities BF25_1621 SM00530 Helix-turn-helix XRE-family like proteins BF25_163 SM00448 cheY-homologous receiver domain BF25_163 SM00862 Transcriptional regulatory protein, C terminal BF25_1632 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF25_1632 SM00387 Histidine kinase-like ATPases BF25_1632 SM00388 His Kinase A (phosphoacceptor) domain BF25_1633 SM00448 cheY-homologous receiver domain BF25_1633 SM00862 Transcriptional regulatory protein, C terminal BF25_164 SM00387 Histidine kinase-like ATPases BF25_164 SM00388 His Kinase A (phosphoacceptor) domain BF25_1640 SM00347 helix_turn_helix multiple antibiotic resistance protein BF25_165 SM00382 ATPases associated with a variety of cellular activities BF25_1653 SM00344 helix_turn_helix ASNC type BF25_1657 SM00028 Tetratricopeptide repeats BF25_1660 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF25_1663 SM00226 Low molecular weight phosphatase family BF25_1668 SM00382 ATPases associated with a variety of cellular activities BF25_1695 SM01060 BF25_1695 BF25_17 SM00354 helix_turn _helix lactose operon repressor BF25_1708 SM00448 cheY-homologous receiver domain BF25_1716 SM00919 Malic enzyme, NAD binding domain BF25_1716 SM01274 BF25_1716 BF25_1723 SM00530 Helix-turn-helix XRE-family like proteins BF25_1724 SM00870 BF25_1724 BF25_1742 SM00849 Metallo-beta-lactamase superfamily BF25_1755 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF25_1759 SM00346 helix_turn_helix isocitrate lyase regulation BF25_1760 SM00796 Allophanate hydrolase subunit 1 BF25_1761 SM00797 Allophanate hydrolase subunit 2 BF25_178 SM00893 Electron transfer flavoprotein domain BF25_1789 SM00448 cheY-homologous receiver domain BF25_1789 SM00862 Transcriptional regulatory protein, C terminal BF25_179 SM00893 Electron transfer flavoprotein domain BF25_1790 SM00387 Histidine kinase-like ATPases BF25_1790 SM00388 His Kinase A (phosphoacceptor) domain BF25_1794 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF25_1799 SM00342 helix_turn_helix, arabinose operon control protein BF25_1799 SM00871 Bacterial transcription activator, effector binding domain BF25_1804 SM00382 ATPases associated with a variety of cellular activities BF25_1806 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF25_1807 SM00382 ATPases associated with a variety of cellular activities BF25_181 SM00465 GIY-YIG type nucleases (URI domain) BF25_1812 SM00889 Elongation factor G, domain IV BF25_1813 SM00347 helix_turn_helix multiple antibiotic resistance protein BF25_1824 SM01060 BF25_1824 BF25_1844 SM00850 LytTr DNA-binding domain BF25_1849 SM00530 Helix-turn-helix XRE-family like proteins BF25_1851 SM00098 Alkaline phosphatase homologues BF25_1855 SM00346 helix_turn_helix isocitrate lyase regulation BF25_1858 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BF25_1862 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF25_1869 SM01133 BF25_1869 BF25_1874 SM00382 ATPases associated with a variety of cellular activities BF25_1885 SM00287 Bacterial SH3 domain homologues BF25_1893 SM00830 Chorismate mutase type II BF25_1903 SM00382 ATPases associated with a variety of cellular activities BF25_192 SM00382 ATPases associated with a variety of cellular activities BF25_1921 SM00028 Tetratricopeptide repeats BF25_1927 SM00382 ATPases associated with a variety of cellular activities BF25_1928 SM00062 Bacterial periplasmic substrate-binding proteins BF25_1939 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF25_1941 SM00382 ATPases associated with a variety of cellular activities BF25_197 SM00530 Helix-turn-helix XRE-family like proteins BF25_1980 SM00448 cheY-homologous receiver domain BF25_1980 SM00862 Transcriptional regulatory protein, C terminal BF25_1981 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF25_1981 SM00387 Histidine kinase-like ATPases BF25_1981 SM00388 His Kinase A (phosphoacceptor) domain BF25_1982 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BF25_1990 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BF25_2003 SM00091 PAS domain BF25_2003 SM00382 ATPases associated with a variety of cellular activities BF25_2007 SM01130 BF25_2007 BF25_201 SM00342 helix_turn_helix, arabinose operon control protein BF25_201 SM00448 cheY-homologous receiver domain BF25_2013 SM01131 BF25_2013 BF25_2020 SM00341 Helicase and RNase D C-terminal BF25_2020 SM00487 DEAD-like helicases superfamily BF25_2020 SM00490 helicase superfamily c-terminal domain BF25_2020 SM00956 BF25_2020 BF25_203 SM00382 ATPases associated with a variety of cellular activities BF25_2035 SM00849 Metallo-beta-lactamase superfamily BF25_204 SM00382 ATPases associated with a variety of cellular activities BF25_2044 SM00060 Fibronectin type 3 domain BF25_2044 SM00495 Chitin-binding domain type 3 BF25_2051 SM00116 Domain in cystathionine beta-synthase and other proteins. BF25_2051 SM00382 ATPases associated with a variety of cellular activities BF25_2062 SM00861 Transketolase, pyrimidine binding domain BF25_2072 SM00420 helix_turn_helix, Deoxyribose operon repressor BF25_2072 SM01134 BF25_2072 BF25_2076 SM00382 ATPases associated with a variety of cellular activities BF25_2099 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF25_2103 SM00871 Bacterial transcription activator, effector binding domain BF25_2107 SM00642 Alpha-amylase domain BF25_212 SM00421 helix_turn_helix, Lux Regulon BF25_2129 SM00465 GIY-YIG type nucleases (URI domain) BF25_2152 SM00480 DNA polymerase III beta subunit BF25_2163 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF25_2172 SM00422 helix_turn_helix, mercury resistance BF25_2184 SM00740 BF25_2184 BF25_2185 SM00829 Enoylreductase BF25_2188 SM00387 Histidine kinase-like ATPases BF25_2188 SM00388 His Kinase A (phosphoacceptor) domain BF25_219 SM00909 Sporulation and spore germination BF25_2191 SM00382 ATPases associated with a variety of cellular activities BF25_2196 SM00091 PAS domain BF25_2196 SM00387 Histidine kinase-like ATPases BF25_2196 SM00388 His Kinase A (phosphoacceptor) domain BF25_2222 SM01209 BF25_2222 BF25_2223 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF25_2230 SM00382 ATPases associated with a variety of cellular activities BF25_2236 SM00387 Histidine kinase-like ATPases BF25_2238 SM00448 cheY-homologous receiver domain BF25_2238 SM00862 Transcriptional regulatory protein, C terminal BF25_2249 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF25_2252 SM00342 helix_turn_helix, arabinose operon control protein BF25_2258 SM00422 helix_turn_helix, mercury resistance BF25_2258 SM00871 Bacterial transcription activator, effector binding domain BF25_2262 SM00382 ATPases associated with a variety of cellular activities BF25_2274 SM00448 cheY-homologous receiver domain BF25_2274 SM00862 Transcriptional regulatory protein, C terminal BF25_2275 SM00387 Histidine kinase-like ATPases BF25_2275 SM00388 His Kinase A (phosphoacceptor) domain BF25_2287 SM00878 Biotin carboxylase C-terminal domain BF25_2293 SM00382 ATPases associated with a variety of cellular activities BF25_2296 SM00450 Rhodanese Homology Domain BF25_2296 SM00849 Metallo-beta-lactamase superfamily BF25_2298 SM00860 SMI1 / KNR4 family BF25_2300 SM00052 Putative diguanylate phosphodiesterase BF25_2300 SM00091 PAS domain BF25_2300 SM00267 diguanylate cyclase BF25_2302 SM00382 ATPases associated with a variety of cellular activities BF25_2306 SM00646 BF25_2306 BF25_231 SM00382 ATPases associated with a variety of cellular activities BF25_231 SM00994 ClpX C4-type zinc finger BF25_231 SM01086 C-terminal, D2-small domain, of ClpB protein BF25_2311 SM00530 Helix-turn-helix XRE-family like proteins BF25_232 SM00382 ATPases associated with a variety of cellular activities BF25_2328 SM00354 helix_turn _helix lactose operon repressor BF25_2329 SM00014 Acid phosphatase homologues BF25_233 SM00382 ATPases associated with a variety of cellular activities BF25_233 SM00464 Found in ATP-dependent protease La (LON) BF25_2346 SM00855 Phosphoglycerate mutase family BF25_2347 SM00347 helix_turn_helix multiple antibiotic resistance protein BF25_2352 SM00382 ATPases associated with a variety of cellular activities BF25_2357 SM00487 DEAD-like helicases superfamily BF25_2357 SM00490 helicase superfamily c-terminal domain BF25_236 SM00347 helix_turn_helix multiple antibiotic resistance protein BF25_2360 SM00849 Metallo-beta-lactamase superfamily BF25_2364 SM01207 BF25_2364 BF25_2381 SM00530 Helix-turn-helix XRE-family like proteins BF25_2383 SM00646 BF25_2383 BF25_2385 SM00382 ATPases associated with a variety of cellular activities BF25_2386 SM00382 ATPases associated with a variety of cellular activities BF25_2393 SM00859 Semialdehyde dehydrogenase, NAD binding domain BF25_24 SM00248 ankyrin repeats BF25_2406 SM00357 Cold shock protein domain BF25_241 SM01004 Delta-aminolevulinic acid dehydratase BF25_2414 SM00530 Helix-turn-helix XRE-family like proteins BF25_2419 SM01059 Chloramphenicol acetyltransferase BF25_2423 SM00849 Metallo-beta-lactamase superfamily BF25_2429 SM00849 Metallo-beta-lactamase superfamily BF25_243 SM00257 Lysin motif BF25_2442 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF25_2443 SM00363 S4 RNA-binding domain BF25_2451 SM00411 bacterial (prokaryotic) histone like domain BF25_2455 SM00923 MbtH-like protein BF25_2456 SM00823 Phosphopantetheine attachment site BF25_2456 SM00824 Thioesterase BF25_2463 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF25_2491 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. BF25_25 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF25_25 SM00387 Histidine kinase-like ATPases BF25_25 SM00388 His Kinase A (phosphoacceptor) domain BF25_2502 SM00530 Helix-turn-helix XRE-family like proteins BF25_2507 SM00860 SMI1 / KNR4 family BF25_2509 SM00014 Acid phosphatase homologues BF25_2512 SM00219 Tyrosine kinase, catalytic domain BF25_2520 SM00382 ATPases associated with a variety of cellular activities BF25_2523 SM00882 Coenzyme A transferase BF25_2524 SM00882 Coenzyme A transferase BF25_2527 SM00387 Histidine kinase-like ATPases BF25_2527 SM00388 His Kinase A (phosphoacceptor) domain BF25_2530 SM01091 Transporter associated domain BF25_2538 SM00382 ATPases associated with a variety of cellular activities BF25_2552 SM00829 Enoylreductase BF25_2555 SM00421 helix_turn_helix, Lux Regulon BF25_2555 SM00448 cheY-homologous receiver domain BF25_2556 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BF25_2578 SM00563 Phosphate acyltransferases BF25_2590 SM00382 ATPases associated with a variety of cellular activities BF25_26 SM00448 cheY-homologous receiver domain BF25_26 SM00862 Transcriptional regulatory protein, C terminal BF25_2606 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF25_2606 SM00387 Histidine kinase-like ATPases BF25_2606 SM00388 His Kinase A (phosphoacceptor) domain BF25_2607 SM00448 cheY-homologous receiver domain BF25_2607 SM00862 Transcriptional regulatory protein, C terminal BF25_261 SM01317 BF25_261 BF25_2618 SM00857 Resolvase, N terminal domain BF25_2625 SM00028 Tetratricopeptide repeats BF25_2628 SM00382 ATPases associated with a variety of cellular activities BF25_263 SM00448 cheY-homologous receiver domain BF25_263 SM00862 Transcriptional regulatory protein, C terminal BF25_2631 SM00327 von Willebrand factor (vWF) type A domain BF25_2637 SM00028 Tetratricopeptide repeats BF25_2638 SM00028 Tetratricopeptide repeats BF25_2642 SM00836 DALR anticodon binding domain BF25_2642 SM01016 Arginyl tRNA synthetase N terminal dom BF25_2646 SM00567 E-Z type HEAT repeats BF25_2646 SM00932 Scaffold protein Nfu/NifU N terminal BF25_265 SM00387 Histidine kinase-like ATPases BF25_2653 SM00382 ATPases associated with a variety of cellular activities BF25_2654 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF25_266 SM00382 ATPases associated with a variety of cellular activities BF25_2665 SM00894 Excalibur calcium-binding domain BF25_2678 SM00852 Probable molybdopterin binding domain BF25_2680 SM00729 Elongator protein 3, MiaB family, Radical SAM BF25_2681 SM00100 Cyclic nucleotide-monophosphate binding domain BF25_2681 SM00419 helix_turn_helix, cAMP Regulatory protein BF25_2683 SM00382 ATPases associated with a variety of cellular activities BF25_2684 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF25_2688 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BF25_2693 SM00460 Transglutaminase/protease-like homologues BF25_2696 SM00849 Metallo-beta-lactamase superfamily BF25_2700 SM00829 Enoylreductase BF25_2704 SM00487 DEAD-like helicases superfamily BF25_2704 SM00490 helicase superfamily c-terminal domain BF25_2727 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF25_2733 SM01005 Alanine racemase, C-terminal domain BF25_2736 SM00855 Phosphoglycerate mutase family BF25_2737 SM00244 prohibitin homologues BF25_2752 SM01091 Transporter associated domain BF25_2757 SM00155 Phospholipase D. Active site motifs. BF25_276 SM00257 Lysin motif BF25_2768 SM00855 Phosphoglycerate mutase family BF25_2789 SM00833 Cobalamin synthesis protein cobW C-terminal domain BF25_279 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF25_2801 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF25_2801 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF25_2808 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF25_2810 SM00966 SpoVT / AbrB like domain BF25_2816 SM00460 Transglutaminase/protease-like homologues BF25_2836 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF25_2836 SM00387 Histidine kinase-like ATPases BF25_2836 SM00388 His Kinase A (phosphoacceptor) domain BF25_2837 SM00448 cheY-homologous receiver domain BF25_2837 SM00862 Transcriptional regulatory protein, C terminal BF25_284 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF25_285 SM00382 ATPases associated with a variety of cellular activities BF25_2852 SM00387 Histidine kinase-like ATPases BF25_2852 SM00388 His Kinase A (phosphoacceptor) domain BF25_2853 SM00448 cheY-homologous receiver domain BF25_2853 SM00862 Transcriptional regulatory protein, C terminal BF25_2854 SM00382 ATPases associated with a variety of cellular activities BF25_2857 SM00287 Bacterial SH3 domain homologues BF25_2863 SM00382 ATPases associated with a variety of cellular activities BF25_2864 SM00382 ATPases associated with a variety of cellular activities BF25_2868 SM00347 helix_turn_helix multiple antibiotic resistance protein BF25_2875 SM00382 ATPases associated with a variety of cellular activities BF25_2876 SM00382 ATPases associated with a variety of cellular activities BF25_2883 SM00833 Cobalamin synthesis protein cobW C-terminal domain BF25_289 SM01323 BF25_289 BF25_29 SM00116 Domain in cystathionine beta-synthase and other proteins. BF25_2903 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF25_2903 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF25_2903 SM00493 BF25_2903 BF25_2905 SM00287 Bacterial SH3 domain homologues BF25_2907 SM01011 Aminopeptidase P, N-terminal domain BF25_2913 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BF25_2915 SM01133 BF25_2915 BF25_2926 SM00450 Rhodanese Homology Domain BF25_2929 SM00387 Histidine kinase-like ATPases BF25_2929 SM00388 His Kinase A (phosphoacceptor) domain BF25_2930 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF25_2931 SM00448 cheY-homologous receiver domain BF25_2931 SM00862 Transcriptional regulatory protein, C terminal BF25_2933 SM00729 Elongator protein 3, MiaB family, Radical SAM BF25_2944 SM00850 LytTr DNA-binding domain BF25_2950 SM00854 Bacterial capsule synthesis protein PGA_cap BF25_298 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF25_298 SM00954 Region found in RelA / SpoT proteins BF25_2987 SM00047 Lysozyme subfamily 2 BF25_2988 SM00646 BF25_2988 BF25_3000 SM00487 DEAD-like helicases superfamily BF25_3000 SM00490 helicase superfamily c-terminal domain BF25_3001 SM00448 cheY-homologous receiver domain BF25_3002 SM00387 Histidine kinase-like ATPases BF25_3003 SM00919 Malic enzyme, NAD binding domain BF25_3003 SM01274 BF25_3003 BF25_3007 SM00155 Phospholipase D. Active site motifs. BF25_3010 SM00382 ATPases associated with a variety of cellular activities BF25_3012 SM00421 helix_turn_helix, Lux Regulon BF25_3012 SM00448 cheY-homologous receiver domain BF25_3021 SM00530 Helix-turn-helix XRE-family like proteins BF25_3039 SM00833 Cobalamin synthesis protein cobW C-terminal domain BF25_3041 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF25_3041 SM00895 BF25_3041 BF25_305 SM00382 ATPases associated with a variety of cellular activities BF25_3054 SM00855 Phosphoglycerate mutase family BF25_3057 SM00835 Cupin BF25_3061 SM00849 Metallo-beta-lactamase superfamily BF25_3061 SM01027 Beta-Casp domain BF25_3064 SM00382 ATPases associated with a variety of cellular activities BF25_3068 SM00530 Helix-turn-helix XRE-family like proteins BF25_3079 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF25_309 SM00028 Tetratricopeptide repeats BF25_3097 SM00028 Tetratricopeptide repeats BF25_3100 SM00028 Tetratricopeptide repeats BF25_3106 SM00448 cheY-homologous receiver domain BF25_3107 SM00260 Two component signalling adaptor domain BF25_3116 SM00382 ATPases associated with a variety of cellular activities BF25_3133 SM00138 Methyltransferase, chemotaxis proteins BF25_3137 SM00260 Two component signalling adaptor domain BF25_3137 SM00387 Histidine kinase-like ATPases BF25_3137 SM01231 BF25_3137 BF25_3138 SM00073 Histidine Phosphotransfer domain BF25_3139 SM00448 cheY-homologous receiver domain BF25_3157 SM00422 helix_turn_helix, mercury resistance BF25_3157 SM00871 Bacterial transcription activator, effector binding domain BF25_3158 SM00849 Metallo-beta-lactamase superfamily BF25_316 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF25_3168 SM00357 Cold shock protein domain BF25_318 SM00732 Likely ribonuclease with RNase H fold. BF25_3192 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BF25_3192 SM00475 5'-3' exonuclease BF25_3198 SM00450 Rhodanese Homology Domain BF25_3211 SM00491 BF25_3211 BF25_3213 SM00981 BF25_3213 BF25_3224 SM00060 Fibronectin type 3 domain BF25_3226 SM00478 endonuclease III BF25_3226 SM00525 BF25_3226 BF25_3231 SM00479 BF25_3231 BF25_3231 SM00487 DEAD-like helicases superfamily BF25_3231 SM00491 BF25_3231 BF25_3240 SM00851 MGS-like domain BF25_3244 SM00986 Uracil DNA glycosylase superfamily BF25_3244 SM00987 UreE urease accessory protein, C-terminal domain BF25_3253 SM00914 BF25_3253 BF25_3254 SM00028 Tetratricopeptide repeats BF25_3258 SM00562 BF25_3258 BF25_3263 SM00411 bacterial (prokaryotic) histone like domain BF25_3274 SM01240 BF25_3274 BF25_3275 SM00316 Ribosomal protein S1-like RNA-binding domain BF25_3278 SM00870 BF25_3278 BF25_3280 SM00644 BF25_3280 BF25_3283 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF25_3285 SM00422 helix_turn_helix, mercury resistance BF25_3287 SM00257 Lysin motif BF25_3289 SM00487 DEAD-like helicases superfamily BF25_3289 SM00490 helicase superfamily c-terminal domain BF25_3294 SM00257 Lysin motif BF25_3296 SM00091 PAS domain BF25_3296 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF25_3296 SM00387 Histidine kinase-like ATPases BF25_3296 SM00388 His Kinase A (phosphoacceptor) domain BF25_3297 SM00448 cheY-homologous receiver domain BF25_3297 SM00862 Transcriptional regulatory protein, C terminal BF25_3301 SM00363 S4 RNA-binding domain BF25_3312 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF25_3312 SM00387 Histidine kinase-like ATPases BF25_3312 SM00388 His Kinase A (phosphoacceptor) domain BF25_3316 SM00091 PAS domain BF25_3316 SM00388 His Kinase A (phosphoacceptor) domain BF25_3334 SM00421 helix_turn_helix, Lux Regulon BF25_3334 SM00448 cheY-homologous receiver domain BF25_3335 SM00387 Histidine kinase-like ATPases BF25_337 SM00382 ATPases associated with a variety of cellular activities BF25_3371 SM01329 BF25_3371 BF25_3372 SM00917 LeuA allosteric (dimerisation) domain BF25_3386 SM00347 helix_turn_helix multiple antibiotic resistance protein BF25_3410 SM00344 helix_turn_helix ASNC type BF25_3414 SM00382 ATPases associated with a variety of cellular activities BF25_3416 SM00382 ATPases associated with a variety of cellular activities BF25_3417 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF25_342 SM00530 Helix-turn-helix XRE-family like proteins BF25_3420 SM00465 GIY-YIG type nucleases (URI domain) BF25_3420 SM00496 Intron-encoded nuclease repeat 2 BF25_3433 SM00387 Histidine kinase-like ATPases BF25_3433 SM00388 His Kinase A (phosphoacceptor) domain BF25_3437 SM00347 helix_turn_helix multiple antibiotic resistance protein BF25_3438 SM00387 Histidine kinase-like ATPases BF25_3438 SM00388 His Kinase A (phosphoacceptor) domain BF25_3444 SM00365 Leucine-rich repeat, SDS22-like subfamily BF25_3444 SM00369 Leucine-rich repeats, typical (most populated) subfamily BF25_3448 SM00420 helix_turn_helix, Deoxyribose operon repressor BF25_3448 SM01134 BF25_3448 BF25_3463 SM00822 BF25_3463 BF25_3477 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF25_3477 SM00895 BF25_3477 BF25_3478 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF25_3478 SM00387 Histidine kinase-like ATPases BF25_3478 SM00388 His Kinase A (phosphoacceptor) domain BF25_3479 SM00448 cheY-homologous receiver domain BF25_3479 SM00862 Transcriptional regulatory protein, C terminal BF25_3489 SM00014 Acid phosphatase homologues BF25_3493 SM00382 ATPases associated with a variety of cellular activities BF25_3496 SM00530 Helix-turn-helix XRE-family like proteins BF25_35 SM00363 S4 RNA-binding domain BF25_3514 SM00530 Helix-turn-helix XRE-family like proteins BF25_3515 SM00861 Transketolase, pyrimidine binding domain BF25_352 SM00855 Phosphoglycerate mutase family BF25_3537 SM00635 Bacterial Ig-like domain 2 BF25_3569 SM00954 Region found in RelA / SpoT proteins BF25_357 SM00098 Alkaline phosphatase homologues BF25_3571 SM01118 BF25_3571 BF25_3577 SM00155 Phospholipase D. Active site motifs. BF25_3584 SM00382 ATPases associated with a variety of cellular activities BF25_3585 SM00382 ATPases associated with a variety of cellular activities BF25_359 SM00954 Region found in RelA / SpoT proteins BF25_3593 SM00825 Beta-ketoacyl synthase BF25_3599 SM00382 ATPases associated with a variety of cellular activities BF25_3599 SM01086 C-terminal, D2-small domain, of ClpB protein BF25_3608 SM00316 Ribosomal protein S1-like RNA-binding domain BF25_3610 SM00530 Helix-turn-helix XRE-family like proteins BF25_3611 SM00642 Alpha-amylase domain BF25_3614 SM01060 BF25_3614 BF25_3636 SM00357 Cold shock protein domain BF25_3644 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF25_3644 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF25_3650 SM00448 cheY-homologous receiver domain BF25_3650 SM00862 Transcriptional regulatory protein, C terminal BF25_3651 SM00387 Histidine kinase-like ATPases BF25_3651 SM00388 His Kinase A (phosphoacceptor) domain BF25_3654 SM00342 helix_turn_helix, arabinose operon control protein BF25_3654 SM00871 Bacterial transcription activator, effector binding domain BF25_3657 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF25_3669 SM00725 NEAr Transporter domain BF25_3674 SM00849 Metallo-beta-lactamase superfamily BF25_3676 SM00354 helix_turn _helix lactose operon repressor BF25_3697 SM00422 helix_turn_helix, mercury resistance BF25_371 SM01103 BF25_371 BF25_3712 SM00382 ATPases associated with a variety of cellular activities BF25_3715 SM00347 helix_turn_helix multiple antibiotic resistance protein BF25_3724 SM00347 helix_turn_helix multiple antibiotic resistance protein BF25_373 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF25_3734 SM00530 Helix-turn-helix XRE-family like proteins BF25_3739 SM00028 Tetratricopeptide repeats BF25_3744 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF25_3752 SM00829 Enoylreductase BF25_3759 SM00387 Histidine kinase-like ATPases BF25_3759 SM00388 His Kinase A (phosphoacceptor) domain BF25_3759 SM00448 cheY-homologous receiver domain BF25_3760 SM00138 Methyltransferase, chemotaxis proteins BF25_3761 SM00331 Sigma factor PP2C-like phosphatases BF25_3761 SM00448 cheY-homologous receiver domain BF25_377 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF25_3773 SM00460 Transglutaminase/protease-like homologues BF25_3778 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF25_3785 SM01120 BF25_3785 BF25_379 SM00849 Metallo-beta-lactamase superfamily BF25_3792 SM00347 helix_turn_helix multiple antibiotic resistance protein BF25_38 SM00363 S4 RNA-binding domain BF25_38 SM01390 BF25_38 BF25_3817 SM00422 helix_turn_helix, mercury resistance BF25_3823 SM00448 cheY-homologous receiver domain BF25_3824 SM00091 PAS domain BF25_3824 SM00387 Histidine kinase-like ATPases BF25_3826 SM00860 SMI1 / KNR4 family BF25_3827 SM00860 SMI1 / KNR4 family BF25_3831 SM00382 ATPases associated with a variety of cellular activities BF25_3845 SM00646 BF25_3845 BF25_385 SM00838 Elongation factor G C-terminus BF25_3856 SM00635 Bacterial Ig-like domain 2 BF25_3859 SM00957 SecA DEAD-like domain BF25_3859 SM00958 SecA preprotein cross-linking domain BF25_3866 SM00729 Elongator protein 3, MiaB family, Radical SAM BF25_3868 SM00644 BF25_3868 BF25_387 SM00729 Elongator protein 3, MiaB family, Radical SAM BF25_3883 SM00382 ATPases associated with a variety of cellular activities BF25_3885 SM00062 Bacterial periplasmic substrate-binding proteins BF25_3885 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF25_3886 SM00382 ATPases associated with a variety of cellular activities BF25_3888 SM00382 ATPases associated with a variety of cellular activities BF25_3894 SM01060 BF25_3894 BF25_3907 SM00344 helix_turn_helix ASNC type BF25_391 SM00271 DnaJ molecular chaperone homology domain BF25_3926 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen BF25_3937 SM00382 ATPases associated with a variety of cellular activities BF25_3939 SM00287 Bacterial SH3 domain homologues BF25_394 SM00729 Elongator protein 3, MiaB family, Radical SAM BF25_3949 SM00829 Enoylreductase BF25_3954 SM00450 Rhodanese Homology Domain BF25_3958 SM00450 Rhodanese Homology Domain BF25_3958 SM00849 Metallo-beta-lactamase superfamily BF25_3959 SM00450 Rhodanese Homology Domain BF25_3961 SM00450 Rhodanese Homology Domain BF25_3964 SM00347 helix_turn_helix multiple antibiotic resistance protein BF25_3978 SM00354 helix_turn _helix lactose operon repressor BF25_3980 SM00640 Glycosyl hydrolases family 32 BF25_3989 SM00347 helix_turn_helix multiple antibiotic resistance protein BF25_400 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF25_4006 SM00382 ATPases associated with a variety of cellular activities BF25_4008 SM00287 Bacterial SH3 domain homologues BF25_4011 SM00116 Domain in cystathionine beta-synthase and other proteins. BF25_4041 SM00899 BF25_4041 BF25_4059 SM00530 Helix-turn-helix XRE-family like proteins BF25_4068 SM00530 Helix-turn-helix XRE-family like proteins BF25_407 SM00116 Domain in cystathionine beta-synthase and other proteins. BF25_4070 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF25_4077 SM00770 Zinc dependent phospholipase C (alpha toxin) BF25_4079 SM00829 Enoylreductase BF25_4086 SM00382 ATPases associated with a variety of cellular activities BF25_4089 SM00354 helix_turn _helix lactose operon repressor BF25_409 SM00400 zinc finger BF25_409 SM00493 BF25_409 BF25_409 SM00766 DNA primase DnaG DnaB-binding BF25_4092 SM00347 helix_turn_helix multiple antibiotic resistance protein BF25_4094 SM00382 ATPases associated with a variety of cellular activities BF25_4095 SM00382 ATPases associated with a variety of cellular activities BF25_4104 SM00448 cheY-homologous receiver domain BF25_4104 SM00862 Transcriptional regulatory protein, C terminal BF25_4105 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF25_4105 SM00387 Histidine kinase-like ATPases BF25_4105 SM00388 His Kinase A (phosphoacceptor) domain BF25_4115 SM00062 Bacterial periplasmic substrate-binding proteins BF25_4115 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF25_4116 SM00382 ATPases associated with a variety of cellular activities BF25_4123 SM00642 Alpha-amylase domain BF25_4125 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF25_4125 SM00866 BF25_4125 BF25_4127 SM00052 Putative diguanylate phosphodiesterase BF25_4127 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BF25_4127 SM00091 PAS domain BF25_4127 SM00267 diguanylate cyclase BF25_4130 SM00155 Phospholipase D. Active site motifs. BF25_4131 SM00382 ATPases associated with a variety of cellular activities BF25_4132 SM00327 von Willebrand factor (vWF) type A domain BF25_4137 SM00382 ATPases associated with a variety of cellular activities BF25_4143 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF25_4156 SM00028 Tetratricopeptide repeats BF25_4156 SM00530 Helix-turn-helix XRE-family like proteins BF25_4159 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF25_416 SM00487 DEAD-like helicases superfamily BF25_416 SM00490 helicase superfamily c-terminal domain BF25_4161 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BF25_4161 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BF25_4165 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BF25_4165 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BF25_4169 SM00448 cheY-homologous receiver domain BF25_4169 SM00862 Transcriptional regulatory protein, C terminal BF25_417 SM00518 AP endonuclease family 2 BF25_4170 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF25_4170 SM00387 Histidine kinase-like ATPases BF25_4170 SM00388 His Kinase A (phosphoacceptor) domain BF25_4172 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF25_4175 SM00919 Malic enzyme, NAD binding domain BF25_4175 SM01274 BF25_4175 BF25_4177 SM00448 cheY-homologous receiver domain BF25_4178 SM00387 Histidine kinase-like ATPases BF25_4179 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF25_4179 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF25_4182 SM00387 Histidine kinase-like ATPases BF25_4182 SM00388 His Kinase A (phosphoacceptor) domain BF25_4183 SM00448 cheY-homologous receiver domain BF25_4183 SM00862 Transcriptional regulatory protein, C terminal BF25_4188 SM00382 ATPases associated with a variety of cellular activities BF25_4190 SM00248 ankyrin repeats BF25_4196 SM00091 PAS domain BF25_4196 SM00387 Histidine kinase-like ATPases BF25_4197 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF25_4197 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF25_4198 SM00244 prohibitin homologues BF25_420 SM00382 ATPases associated with a variety of cellular activities BF25_4200 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BF25_4203 SM00364 Leucine-rich repeats, bacterial type BF25_4203 SM00365 Leucine-rich repeat, SDS22-like subfamily BF25_4203 SM00369 Leucine-rich repeats, typical (most populated) subfamily BF25_4203 SM00725 NEAr Transporter domain BF25_4205 SM00763 PrkA AAA domain BF25_4207 SM00052 Putative diguanylate phosphodiesterase BF25_4207 SM00091 PAS domain BF25_4207 SM00267 diguanylate cyclase BF25_4210 SM00567 E-Z type HEAT repeats BF25_4243 SM00382 ATPases associated with a variety of cellular activities BF25_4247 SM00382 ATPases associated with a variety of cellular activities BF25_4251 SM00478 endonuclease III BF25_4251 SM00525 BF25_4251 BF25_4267 SM00984 UDP binding domain BF25_4278 SM00530 Helix-turn-helix XRE-family like proteins BF25_4282 SM00382 ATPases associated with a variety of cellular activities BF25_433 SM00382 ATPases associated with a variety of cellular activities BF25_4331 SM00382 ATPases associated with a variety of cellular activities BF25_4338 SM00530 Helix-turn-helix XRE-family like proteins BF25_4344 SM00478 endonuclease III BF25_4364 SM00226 Low molecular weight phosphatase family BF25_4366 SM00831 Cation transporter/ATPase, N-terminus BF25_4375 SM00946 Prolyl-tRNA synthetase, C-terminal BF25_4380 SM00530 Helix-turn-helix XRE-family like proteins BF25_4386 SM00060 Fibronectin type 3 domain BF25_4386 SM00636 BF25_4386 BF25_4386 SM00637 BF25_4386 BF25_4387 SM00382 ATPases associated with a variety of cellular activities BF25_4388 SM00382 ATPases associated with a variety of cellular activities BF25_4392 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF25_4392 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF25_4396 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF25_4396 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF25_4396 SM00493 BF25_4396 BF25_4400 SM00642 Alpha-amylase domain BF25_4401 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF25_4401 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF25_4402 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF25_4402 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF25_4403 SM00382 ATPases associated with a variety of cellular activities BF25_4404 SM00062 Bacterial periplasmic substrate-binding proteins BF25_4404 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF25_441 SM00849 Metallo-beta-lactamase superfamily BF25_4425 SM01007 Class II Aldolase and Adducin N-terminal domain BF25_443 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF25_4434 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BF25_4448 SM00382 ATPases associated with a variety of cellular activities BF25_4451 SM00046 Diacylglycerol kinase catalytic domain (presumed) BF25_4452 SM00845 GatB domain BF25_4456 SM00347 helix_turn_helix multiple antibiotic resistance protein BF25_4463 SM00382 ATPases associated with a variety of cellular activities BF25_4463 SM00930 BF25_4463 BF25_4469 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF25_4469 SM00292 breast cancer carboxy-terminal domain BF25_4469 SM00532 Ligase N family BF25_4473 SM00244 prohibitin homologues BF25_4475 SM01209 BF25_4475 BF25_4475 SM01210 BF25_4475 BF25_4476 SM00798 AICARFT/IMPCHase bienzyme BF25_4476 SM00851 MGS-like domain BF25_448 SM01018 B12 binding domain BF25_4481 SM01211 BF25_4481 BF25_4484 SM00998 Adenylosuccinate lyase C-terminus BF25_4486 SM01001 AIR carboxylase BF25_4491 SM00448 cheY-homologous receiver domain BF25_4491 SM00862 Transcriptional regulatory protein, C terminal BF25_4492 SM00387 Histidine kinase-like ATPases BF25_4492 SM00388 His Kinase A (phosphoacceptor) domain BF25_4493 SM00382 ATPases associated with a variety of cellular activities BF25_4514 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF25_4514 SM00387 Histidine kinase-like ATPases BF25_4514 SM00388 His Kinase A (phosphoacceptor) domain BF25_4515 SM00448 cheY-homologous receiver domain BF25_4515 SM00862 Transcriptional regulatory protein, C terminal BF25_4519 SM00883 Chaperonin 10 Kd subunit BF25_4522 SM00881 CoA binding domain BF25_4523 SM00382 ATPases associated with a variety of cellular activities BF25_4544 SM00731 SprT homologues. BF25_4545 SM00316 Ribosomal protein S1-like RNA-binding domain BF25_4545 SM00732 Likely ribonuclease with RNase H fold. BF25_4548 SM01005 Alanine racemase, C-terminal domain BF25_4553 SM00487 DEAD-like helicases superfamily BF25_4553 SM00490 helicase superfamily c-terminal domain BF25_4564 SM00382 ATPases associated with a variety of cellular activities BF25_4566 SM00382 ATPases associated with a variety of cellular activities BF25_4572 SM00382 ATPases associated with a variety of cellular activities BF25_4582 SM00354 helix_turn _helix lactose operon repressor BF25_4584 SM00563 Phosphate acyltransferases BF25_459 SM00382 ATPases associated with a variety of cellular activities BF25_4603 SM00342 helix_turn_helix, arabinose operon control protein BF25_4606 SM00382 ATPases associated with a variety of cellular activities BF25_4607 SM00382 ATPases associated with a variety of cellular activities BF25_4617 SM00829 Enoylreductase BF25_4619 SM00382 ATPases associated with a variety of cellular activities BF25_4619 SM00930 BF25_4619 BF25_4630 SM01350 BF25_4630 BF25_4634 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF25_4634 SM00895 BF25_4634 BF25_4658 SM01251 BF25_4658 BF25_466 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. BF25_4661 SM00646 BF25_4661 BF25_4667 SM00382 ATPases associated with a variety of cellular activities BF25_4668 SM00382 ATPases associated with a variety of cellular activities BF25_4670 SM00662 RNA polymerases D BF25_4674 SM00316 Ribosomal protein S1-like RNA-binding domain BF25_4686 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BF25_4687 SM01374 BF25_4687 BF25_4691 SM00322 K homology RNA-binding domain BF25_4694 SM01382 BF25_4694 BF25_4694 SM01383 BF25_4694 BF25_4698 SM01403 BF25_4698 BF25_47 SM00981 BF25_47 BF25_4700 SM00838 Elongation factor G C-terminus BF25_4700 SM00889 Elongation factor G, domain IV BF25_4704 SM00663 RNA polymerase I subunit A N-terminus BF25_4710 SM00649 Ribosomal protein L11/L12 BF25_4711 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BF25_4713 SM00421 helix_turn_helix, Lux Regulon BF25_4715 SM00967 RNA 2'-O ribose methyltransferase substrate binding BF25_4716 SM00535 Ribonuclease III family BF25_4717 SM00840 BF25_4717 BF25_4722 SM00670 Large family of predicted nucleotide-binding domains BF25_4724 SM00382 ATPases associated with a variety of cellular activities BF25_4725 SM00382 ATPases associated with a variety of cellular activities BF25_4725 SM01086 C-terminal, D2-small domain, of ClpB protein BF25_473 SM00487 DEAD-like helicases superfamily BF25_473 SM00490 helicase superfamily c-terminal domain BF25_4735 SM00530 Helix-turn-helix XRE-family like proteins BF25_4737 SM00905 Dihydroneopterin aldolase BF25_4745 SM00382 ATPases associated with a variety of cellular activities BF25_4747 SM00977 TilS substrate C-terminal domain BF25_4748 SM00331 Sigma factor PP2C-like phosphatases BF25_4748 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BF25_4751 SM00316 Ribosomal protein S1-like RNA-binding domain BF25_4755 SM00363 S4 RNA-binding domain BF25_4758 SM00966 SpoVT / AbrB like domain BF25_4759 SM00487 DEAD-like helicases superfamily BF25_4759 SM00490 helicase superfamily c-terminal domain BF25_4759 SM00982 BF25_4759 BF25_4759 SM01058 CarD-like/TRCF domain BF25_4762 SM01400 BF25_4762 BF25_4771 SM00650 Ribosomal RNA adenine dimethylases BF25_4772 SM00493 BF25_4772 BF25_4775 SM00966 SpoVT / AbrB like domain BF25_479 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF25_4793 SM00493 BF25_4793 BF25_4795 SM00382 ATPases associated with a variety of cellular activities BF25_480 SM00382 ATPases associated with a variety of cellular activities BF25_4805 SM00936 Penicillin-binding protein 5, C-terminal domain BF25_4806 SM00116 Domain in cystathionine beta-synthase and other proteins. BF25_4806 SM01240 BF25_4806 BF25_4814 SM00434 DNA Topoisomerase IV BF25_4815 SM00387 Histidine kinase-like ATPases BF25_4815 SM00433 TopoisomeraseII BF25_4818 SM00480 DNA polymerase III beta subunit BF25_4819 SM00382 ATPases associated with a variety of cellular activities BF25_4819 SM00760 Bacterial dnaA protein helix-turn-helix domain BF25_4823 SM00393 Putative single-stranded nucleic acids-binding domain BF25_4823 SM01245 BF25_4823 BF25_4825 SM01228 BF25_4825 BF25_4827 SM00470 ParB-like nuclease domain BF25_4829 SM00470 ParB-like nuclease domain BF25_4838 SM00267 diguanylate cyclase BF25_4841 SM00788 Adenylosuccinate synthetase BF25_4846 SM00448 cheY-homologous receiver domain BF25_4846 SM00862 Transcriptional regulatory protein, C terminal BF25_4847 SM00091 PAS domain BF25_4847 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF25_4847 SM00387 Histidine kinase-like ATPases BF25_4847 SM00388 His Kinase A (phosphoacceptor) domain BF25_4850 SM00849 Metallo-beta-lactamase superfamily BF25_4851 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF25_4856 SM01240 BF25_4856 BF25_4858 SM00487 DEAD-like helicases superfamily BF25_4858 SM00490 helicase superfamily c-terminal domain BF25_4869 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BF25_4869 SM00387 Histidine kinase-like ATPases BF25_4870 SM00448 cheY-homologous receiver domain BF25_4870 SM00850 LytTr DNA-binding domain BF25_4882 SM00382 ATPases associated with a variety of cellular activities BF25_4887 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF25_4893 SM00448 cheY-homologous receiver domain BF25_4893 SM00850 LytTr DNA-binding domain BF25_4896 SM00267 diguanylate cyclase BF25_4898 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BF25_4900 SM00421 helix_turn_helix, Lux Regulon BF25_4900 SM00448 cheY-homologous receiver domain BF25_4902 SM00100 Cyclic nucleotide-monophosphate binding domain BF25_4909 SM00354 helix_turn _helix lactose operon repressor BF25_491 SM00354 helix_turn _helix lactose operon repressor BF25_4911 SM00382 ATPases associated with a variety of cellular activities BF25_4913 SM00986 Uracil DNA glycosylase superfamily BF25_4913 SM00987 UreE urease accessory protein, C-terminal domain BF25_492 SM00450 Rhodanese Homology Domain BF25_4923 SM00936 Penicillin-binding protein 5, C-terminal domain BF25_4933 SM00382 ATPases associated with a variety of cellular activities BF25_4935 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF25_4941 SM00422 helix_turn_helix, mercury resistance BF25_4949 SM00836 DALR anticodon binding domain BF25_4949 SM01016 Arginyl tRNA synthetase N terminal dom BF25_4959 SM00382 ATPases associated with a variety of cellular activities BF25_496 SM00529 Helix-turn-helix diphteria tox regulatory element BF25_4961 SM00387 Histidine kinase-like ATPases BF25_4962 SM00421 helix_turn_helix, Lux Regulon BF25_4962 SM00448 cheY-homologous receiver domain BF25_4963 SM00530 Helix-turn-helix XRE-family like proteins BF25_4966 SM00052 Putative diguanylate phosphodiesterase BF25_4966 SM00267 diguanylate cyclase BF25_4968 SM00155 Phospholipase D. Active site motifs. BF25_4978 SM00448 cheY-homologous receiver domain BF25_4982 SM00357 Cold shock protein domain BF25_4982 SM00382 ATPases associated with a variety of cellular activities BF25_4982 SM00959 Rho termination factor, N-terminal domain BF25_4985 SM00937 BF25_4985 BF25_4992 SM00903 Flavin reductase like domain BF25_4995 SM00226 Low molecular weight phosphatase family BF25_5008 SM00382 ATPases associated with a variety of cellular activities BF25_5012 SM00052 Putative diguanylate phosphodiesterase BF25_5012 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BF25_5012 SM00091 PAS domain BF25_5012 SM00267 diguanylate cyclase BF25_5029 SM00850 LytTr DNA-binding domain BF25_503 SM00841 Elongation factor P, C-terminal BF25_503 SM01185 BF25_503 BF25_5030 SM00382 ATPases associated with a variety of cellular activities BF25_5042 SM00984 UDP binding domain BF25_5044 SM00287 Bacterial SH3 domain homologues BF25_5044 SM00382 ATPases associated with a variety of cellular activities BF25_5049 SM00448 cheY-homologous receiver domain BF25_5049 SM00862 Transcriptional regulatory protein, C terminal BF25_5050 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF25_5050 SM00387 Histidine kinase-like ATPases BF25_5050 SM00388 His Kinase A (phosphoacceptor) domain BF25_5055 SM00530 Helix-turn-helix XRE-family like proteins BF25_5057 SM00382 ATPases associated with a variety of cellular activities BF25_5066 SM00487 DEAD-like helicases superfamily BF25_5066 SM00490 helicase superfamily c-terminal domain BF25_507 SM00382 ATPases associated with a variety of cellular activities BF25_5072 SM00287 Bacterial SH3 domain homologues BF25_5079 SM00287 Bacterial SH3 domain homologues BF25_5080 SM00287 Bacterial SH3 domain homologues BF25_5112 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. BF25_5113 SM00382 ATPases associated with a variety of cellular activities BF25_5116 SM00984 UDP binding domain BF25_5123 SM00487 DEAD-like helicases superfamily BF25_5123 SM00490 helicase superfamily c-terminal domain BF25_5125 SM00357 Cold shock protein domain BF25_5127 SM00957 SecA DEAD-like domain BF25_5127 SM00958 SecA preprotein cross-linking domain BF25_5128 SM00937 BF25_5128 BF25_5130 SM00382 ATPases associated with a variety of cellular activities BF25_5132 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF25_5132 SM00245 tail specific protease BF25_5134 SM00382 ATPases associated with a variety of cellular activities BF25_5136 SM00382 ATPases associated with a variety of cellular activities BF25_5138 SM00422 helix_turn_helix, mercury resistance BF25_5141 SM00530 Helix-turn-helix XRE-family like proteins BF25_5144 SM00422 helix_turn_helix, mercury resistance BF25_5148 SM00487 DEAD-like helicases superfamily BF25_5148 SM00490 helicase superfamily c-terminal domain BF25_5156 SM00028 Tetratricopeptide repeats BF25_517 SM00878 Biotin carboxylase C-terminal domain BF25_5176 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BF25_5180 SM01192 BF25_5180 BF25_5180 SM01193 BF25_5180 BF25_5208 SM00316 Ribosomal protein S1-like RNA-binding domain BF25_5208 SM00357 Cold shock protein domain BF25_5208 SM00955 BF25_5208 BF25_5210 SM00448 cheY-homologous receiver domain BF25_5210 SM00862 Transcriptional regulatory protein, C terminal BF25_5214 SM00382 ATPases associated with a variety of cellular activities BF25_5224 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF25_5225 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain BF25_5227 SM00363 S4 RNA-binding domain BF25_5234 SM01276 BF25_5234 BF25_524 SM00861 Transketolase, pyrimidine binding domain BF25_525 SM00363 S4 RNA-binding domain BF25_5254 SM00347 helix_turn_helix multiple antibiotic resistance protein BF25_5258 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF25_5258 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF25_5262 SM00387 Histidine kinase-like ATPases BF25_5262 SM00388 His Kinase A (phosphoacceptor) domain BF25_5263 SM00448 cheY-homologous receiver domain BF25_5263 SM00862 Transcriptional regulatory protein, C terminal BF25_5268 SM00530 Helix-turn-helix XRE-family like proteins BF25_528 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF25_5282 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF25_5282 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF25_529 SM00448 cheY-homologous receiver domain BF25_5291 SM00849 Metallo-beta-lactamase superfamily BF25_5308 SM00493 BF25_5308 BF25_5311 SM00382 ATPases associated with a variety of cellular activities BF25_5311 SM00930 BF25_5311 BF25_5315 SM00382 ATPases associated with a variety of cellular activities BF25_5326 SM00729 Elongator protein 3, MiaB family, Radical SAM BF25_5328 SM00855 Phosphoglycerate mutase family BF25_5331 SM00422 helix_turn_helix, mercury resistance BF25_5338 SM00420 helix_turn_helix, Deoxyribose operon repressor BF25_534 SM00091 PAS domain BF25_534 SM00382 ATPases associated with a variety of cellular activities BF25_5351 SM00860 SMI1 / KNR4 family BF25_5356 SM00382 ATPases associated with a variety of cellular activities BF25_536 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF25_5366 SM00871 Bacterial transcription activator, effector binding domain BF25_5386 SM00479 BF25_5386 BF25_5387 SM01298 BF25_5387 BF25_5394 SM00344 helix_turn_helix ASNC type BF25_5396 SM00316 Ribosomal protein S1-like RNA-binding domain BF25_540 SM00861 Transketolase, pyrimidine binding domain BF25_5429 SM00642 Alpha-amylase domain BF25_5437 SM00357 Cold shock protein domain BF25_5445 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BF25_5446 SM00448 cheY-homologous receiver domain BF25_5446 SM00862 Transcriptional regulatory protein, C terminal BF25_5447 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF25_5447 SM00387 Histidine kinase-like ATPases BF25_5447 SM00388 His Kinase A (phosphoacceptor) domain BF25_5455 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF25_5455 SM00866 BF25_5455 BF25_546 SM00062 Bacterial periplasmic substrate-binding proteins BF25_546 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF25_5460 SM00382 ATPases associated with a variety of cellular activities BF25_5465 SM00387 Histidine kinase-like ATPases BF25_5466 SM00448 cheY-homologous receiver domain BF25_5466 SM00862 Transcriptional regulatory protein, C terminal BF25_5467 SM00342 helix_turn_helix, arabinose operon control protein BF25_5467 SM00871 Bacterial transcription activator, effector binding domain BF25_5468 SM00382 ATPases associated with a variety of cellular activities BF25_5478 SM00046 Diacylglycerol kinase catalytic domain (presumed) BF25_548 SM00382 ATPases associated with a variety of cellular activities BF25_5484 SM00448 cheY-homologous receiver domain BF25_5484 SM00862 Transcriptional regulatory protein, C terminal BF25_5485 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF25_5485 SM00387 Histidine kinase-like ATPases BF25_5485 SM00388 His Kinase A (phosphoacceptor) domain BF25_5487 SM00899 BF25_5487 BF25_5499 SM00894 Excalibur calcium-binding domain BF25_5503 SM01234 BF25_5503 BF25_5504 SM00947 Carbonic anhydrase BF25_5516 SM00382 ATPases associated with a variety of cellular activities BF25_5523 SM00387 Histidine kinase-like ATPases BF25_5523 SM00388 His Kinase A (phosphoacceptor) domain BF25_5524 SM00387 Histidine kinase-like ATPases BF25_5535 SM00852 Probable molybdopterin binding domain BF25_5538 SM00014 Acid phosphatase homologues BF25_5546 SM00382 ATPases associated with a variety of cellular activities BF25_5548 SM00729 Elongator protein 3, MiaB family, Radical SAM BF25_5552 SM00382 ATPases associated with a variety of cellular activities BF25_5567 SM00450 Rhodanese Homology Domain BF25_557 SM00849 Metallo-beta-lactamase superfamily BF25_5571 SM00729 Elongator protein 3, MiaB family, Radical SAM BF25_5574 SM00852 Probable molybdopterin binding domain BF25_5581 SM01058 CarD-like/TRCF domain BF25_5586 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF25_5590 SM00363 S4 RNA-binding domain BF25_5591 SM00420 helix_turn_helix, Deoxyribose operon repressor BF25_5595 SM00642 Alpha-amylase domain BF25_5599 SM00849 Metallo-beta-lactamase superfamily BF25_5605 SM00725 NEAr Transporter domain BF25_565 SM00859 Semialdehyde dehydrogenase, NAD binding domain BF25_5652 SM00864 Tubulin/FtsZ family, GTPase domain BF25_5655 SM00843 BF25_5655 BF25_5658 SM00530 Helix-turn-helix XRE-family like proteins BF25_5681 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain BF25_5701 SM00487 DEAD-like helicases superfamily BF25_5702 SM00507 HNH nucleases BF25_5716 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF25_5716 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF25_5716 SM00493 BF25_5716 BF25_5718 SM00318 Staphylococcal nuclease homologues BF25_572 SM00347 helix_turn_helix multiple antibiotic resistance protein BF25_5722 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF25_5725 SM00028 Tetratricopeptide repeats BF25_5731 SM00954 Region found in RelA / SpoT proteins BF25_5738 SM00860 SMI1 / KNR4 family BF25_5757 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF25_5758 SM00758 BF25_5758 BF25_5763 SM00857 Resolvase, N terminal domain BF25_5786 SM00984 UDP binding domain BF25_5791 SM00014 Acid phosphatase homologues BF25_5810 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF25_5814 SM00854 Bacterial capsule synthesis protein PGA_cap BF25_582 SM00729 Elongator protein 3, MiaB family, Radical SAM BF25_582 SM00876 Biotin and Thiamin Synthesis associated domain BF25_5821 SM00014 Acid phosphatase homologues BF25_5833 SM00646 BF25_5833 BF25_588 SM00704 CDGSH-type zinc finger. Function unknown. BF25_5883 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF25_5883 SM00493 BF25_5883 BF25_5884 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF25_592 SM00354 helix_turn _helix lactose operon repressor BF25_6 SM00843 BF25_6 BF25_611 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BF25_615 SM00347 helix_turn_helix multiple antibiotic resistance protein BF25_618 SM00382 ATPases associated with a variety of cellular activities BF25_619 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF25_620 SM00936 Penicillin-binding protein 5, C-terminal domain BF25_622 SM00387 Histidine kinase-like ATPases BF25_641 SM00849 Metallo-beta-lactamase superfamily BF25_644 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF25_644 SM00866 BF25_644 BF25_646 SM01061 CAT RNA binding domain BF25_653 SM00267 diguanylate cyclase BF25_659 SM01007 Class II Aldolase and Adducin N-terminal domain BF25_676 SM00382 ATPases associated with a variety of cellular activities BF25_683 SM00382 ATPases associated with a variety of cellular activities BF25_684 SM00642 Alpha-amylase domain BF25_685 SM00642 Alpha-amylase domain BF25_689 SM00354 helix_turn _helix lactose operon repressor BF25_692 SM00387 Histidine kinase-like ATPases BF25_692 SM00388 His Kinase A (phosphoacceptor) domain BF25_709 SM00052 Putative diguanylate phosphodiesterase BF25_72 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BF25_72 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BF25_722 SM00849 Metallo-beta-lactamase superfamily BF25_728 SM00861 Transketolase, pyrimidine binding domain BF25_74 SM00530 Helix-turn-helix XRE-family like proteins BF25_744 SM00838 Elongation factor G C-terminus BF25_749 SM00670 Large family of predicted nucleotide-binding domains BF25_753 SM00878 Biotin carboxylase C-terminal domain BF25_766 SM00855 Phosphoglycerate mutase family BF25_775 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF25_781 SM00530 Helix-turn-helix XRE-family like proteins BF25_785 SM00530 Helix-turn-helix XRE-family like proteins BF25_786 SM00530 Helix-turn-helix XRE-family like proteins BF25_791 SM00382 ATPases associated with a variety of cellular activities BF25_805 SM00530 Helix-turn-helix XRE-family like proteins BF25_814 SM00507 HNH nucleases BF25_837 SM00644 BF25_837 BF25_840 SM00530 Helix-turn-helix XRE-family like proteins BF25_848 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains BF25_85 SM00849 Metallo-beta-lactamase superfamily BF25_854 SM00740 BF25_854 BF25_855 SM00740 BF25_855 BF25_863 SM00842 Cell division protein FtsA BF25_864 SM00864 Tubulin/FtsZ family, GTPase domain BF25_864 SM00865 Tubulin/FtsZ family, C-terminal domain BF25_87 SM00116 Domain in cystathionine beta-synthase and other proteins. BF25_873 SM00363 S4 RNA-binding domain BF25_878 SM00363 S4 RNA-binding domain BF25_883 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BF25_884 SM00851 MGS-like domain BF25_884 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BF25_884 SM01209 BF25_884 BF25_887 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BF25_896 SM00831 Cation transporter/ATPase, N-terminus BF25_899 SM00072 Guanylate kinase homologues. BF25_900 SM01409 BF25_900 BF25_902 SM00487 DEAD-like helicases superfamily BF25_902 SM00490 helicase superfamily c-terminal domain BF25_907 SM00331 Sigma factor PP2C-like phosphatases BF25_907 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BF25_908 SM00220 Serine/Threonine protein kinases, catalytic domain BF25_908 SM00740 BF25_908 BF25_911 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain BF25_914 SM01120 BF25_914 BF25_914 SM01121 BF25_914 BF25_915 SM00487 DEAD-like helicases superfamily BF25_915 SM00490 helicase superfamily c-terminal domain BF25_918 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BF25_919 SM00822 BF25_919 BF25_921 SM00358 Double-stranded RNA binding motif BF25_921 SM00535 Ribonuclease III family BF25_922 SM00968 SMC proteins Flexible Hinge Domain BF25_923 SM00382 ATPases associated with a variety of cellular activities BF25_923 SM00962 SRP54-type protein, GTPase domain BF25_923 SM00963 SRP54-type protein, helical bundle domain BF25_925 SM00382 ATPases associated with a variety of cellular activities BF25_925 SM00962 SRP54-type protein, GTPase domain BF25_925 SM00963 SRP54-type protein, helical bundle domain BF25_935 SM00881 CoA binding domain BF25_937 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF25_937 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF25_937 SM00493 BF25_937 BF25_94 SM00481 DNA polymerase alpha chain like domain BF25_941 SM00382 ATPases associated with a variety of cellular activities BF25_941 SM01086 C-terminal, D2-small domain, of ClpB protein BF25_95 SM00919 Malic enzyme, NAD binding domain BF25_95 SM01274 BF25_95 BF25_950 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF25_952 SM00479 BF25_952 BF25_952 SM00481 DNA polymerase alpha chain like domain BF25_954 SM00316 Ribosomal protein S1-like RNA-binding domain BF25_954 SM00322 K homology RNA-binding domain BF25_96 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF25_961 SM00904 Riboflavin kinase BF25_962 SM01387 BF25_962 BF25_963 SM00316 Ribosomal protein S1-like RNA-binding domain BF25_963 SM00322 K homology RNA-binding domain BF25_969 SM00859 Semialdehyde dehydrogenase, NAD binding domain BF25_971 SM01130 BF25_971 BF25_972 SM00849 Metallo-beta-lactamase superfamily BF25_975 SM00382 ATPases associated with a variety of cellular activities BF25_975 SM00843 BF25_975 BF25_976 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF25_976 SM00866 BF25_976 BF25_978 SM00382 ATPases associated with a variety of cellular activities BF25_989 SM00852 Probable molybdopterin binding domain BF25_990 SM00382 ATPases associated with a variety of cellular activities BF25_992 SM00322 K homology RNA-binding domain BF25_992 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF25_998 SM00729 Elongator protein 3, MiaB family, Radical SAM