locus-tag class description BG01_1000 PF00202 Aminotransferase class-III BG01_1001 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BG01_1001 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BG01_1004 PF01037 Lrp/AsnC ligand binding domain BG01_1004 PF13404 AsnC-type helix-turn-helix domain BG01_1006 PF02872 5'-nucleotidase, C-terminal domain BG01_1006 PF00149 Calcineurin-like phosphoesterase BG01_1009 PF00202 Aminotransferase class-III BG01_1011 PF00155 Aminotransferase class I and II BG01_1012 PF12697 Alpha/beta hydrolase family BG01_1012 PF08241 Methyltransferase domain BG01_1013 PF13847 Methyltransferase domain BG01_1014 PF04055 Radical SAM superfamily BG01_1014 PF06968 Biotin and Thiamin Synthesis associated domain BG01_1015 PF00885 6,7-dimethyl-8-ribityllumazine synthase BG01_1017 PF00925 GTP cyclohydrolase II BG01_1017 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BG01_1018 PF00677 Lumazine binding domain BG01_1019 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BG01_1019 PF01872 RibD C-terminal domain BG01_1021 PF10827 Protein of unknown function (DUF2552) BG01_1022 PF12146 Serine aminopeptidase, S33 BG01_1023 PF00583 Acetyltransferase (GNAT) family BG01_1026 PF13726 Na+-H+ antiporter family BG01_1026 PF03553 Na+/H+ antiporter family BG01_1027 PF12146 Serine aminopeptidase, S33 BG01_1029 PF00565 Staphylococcal nuclease homologue BG01_1029 PF00149 Calcineurin-like phosphoesterase BG01_1029 PF02872 5'-nucleotidase, C-terminal domain BG01_1029 PF00746 LPXTG cell wall anchor motif BG01_103 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BG01_103 PF01276 Orn/Lys/Arg decarboxylase, major domain BG01_1031 PF13673 Acetyltransferase (GNAT) domain BG01_1031 PF04229 GrpB protein BG01_1032 PF00248 Aldo/keto reductase family BG01_1033 PF00248 Aldo/keto reductase family BG01_1034 PF13072 Mother cell inhibitor of FtsZ BG01_1035 PF00293 NUDIX domain BG01_1037 PF01944 Stage II sporulation protein M BG01_1038 PF01475 Ferric uptake regulator family BG01_1039 PF14004 Protein of unknown function (DUF4227) BG01_104 PF02223 Thymidylate kinase BG01_1040 PF00589 Phage integrase family BG01_1040 PF02899 Phage integrase, N-terminal SAM-like domain BG01_1042 PF01676 Metalloenzyme superfamily BG01_1043 PF01048 Phosphorylase superfamily BG01_1044 PF02885 Glycosyl transferase family, helical bundle domain BG01_1044 PF00591 Glycosyl transferase family, a/b domain BG01_1044 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain BG01_1045 PF01544 CorA-like Mg2+ transporter protein BG01_1046 PF00860 Permease family BG01_1048 PF01047 MarR family BG01_105 PF09115 DNA polymerase III, delta subunit, C terminal BG01_1051 PF00005 ABC transporter BG01_1052 PF00392 Bacterial regulatory proteins, gntR family BG01_1053 PF00768 D-alanyl-D-alanine carboxypeptidase BG01_1053 PF07943 Penicillin-binding protein 5, C-terminal domain BG01_1054 PF01740 STAS domain BG01_1055 PF13581 Histidine kinase-like ATPase domain BG01_1056 PF04545 Sigma-70, region 4 BG01_1056 PF04542 Sigma-70 region 2 BG01_1056 PF04539 Sigma-70 region 3 BG01_1057 PF00209 Sodium:neurotransmitter symporter family BG01_1059 PF12164 Stage V sporulation protein AA BG01_106 PF04468 PSP1 C-terminal conserved region BG01_1060 PF13782 Stage V sporulation protein AB BG01_1061 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BG01_1062 PF07451 Stage V sporulation protein AD (SpoVAD) BG01_1063 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BG01_1064 PF14097 Stage V sporulation protein AE1 BG01_1065 PF03323 Bacillus/Clostridium GerA spore germination protein BG01_1067 PF06207 Protein of unknown function (DUF1002) BG01_1068 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BG01_1069 PF00583 Acetyltransferase (GNAT) family BG01_107 PF06156 Initiation control protein YabA BG01_1070 PF03745 Domain of unknown function (DUF309) BG01_1072 PF02616 Segregation and condensation protein ScpA BG01_1073 PF04079 Segregation and condensation complex subunit ScpB BG01_1075 PF01979 Amidohydrolase family BG01_1076 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BG01_1079 PF00874 PRD domain BG01_1079 PF03123 CAT RNA binding domain BG01_108 PF05175 Methyltransferase small domain BG01_1080 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BG01_1080 PF00367 phosphotransferase system, EIIB BG01_1080 PF02378 Phosphotransferase system, EIIC BG01_1081 PF00381 PTS HPr component phosphorylation site BG01_1082 PF05524 PEP-utilising enzyme, N-terminal BG01_1082 PF00391 PEP-utilising enzyme, mobile domain BG01_1082 PF02896 PEP-utilising enzyme, TIM barrel domain BG01_1085 PF00881 Nitroreductase family BG01_1086 PF00990 Diguanylate cyclase, GGDEF domain BG01_1087 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BG01_1087 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BG01_1088 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BG01_1088 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BG01_109 PF01541 GIY-YIG catalytic domain BG01_1091 PF03079 ARD/ARD' family BG01_1092 PF00596 Class II Aldolase and Adducin N-terminal domain BG01_1094 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain BG01_1094 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain BG01_1095 PF00155 Aminotransferase class I and II BG01_1096 PF00795 Carbon-nitrogen hydrolase BG01_1097 PF01636 Phosphotransferase enzyme family BG01_110 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BG01_1101 PF03551 Transcriptional regulator PadR-like family BG01_1107 PF00293 NUDIX domain BG01_1108 PF00108 Thiolase, N-terminal domain BG01_1108 PF02803 Thiolase, C-terminal domain BG01_111 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BG01_111 PF18277 AbrB C-terminal domain BG01_1116 PF03459 TOBE domain BG01_1116 PF17912 MalK OB fold domain BG01_1116 PF00005 ABC transporter BG01_1117 PF00128 Alpha amylase, catalytic domain BG01_1117 PF16657 Maltogenic Amylase, C-terminal domain BG01_1118 PF16657 Maltogenic Amylase, C-terminal domain BG01_1118 PF02903 Alpha amylase, N-terminal ig-like domain BG01_1118 PF00128 Alpha amylase, catalytic domain BG01_1119 PF13416 Bacterial extracellular solute-binding protein BG01_112 PF08264 Anticodon-binding domain of tRNA BG01_112 PF01588 Putative tRNA binding domain BG01_112 PF09334 tRNA synthetases class I (M) BG01_1120 PF00528 Binding-protein-dependent transport system inner membrane component BG01_1121 PF00528 Binding-protein-dependent transport system inner membrane component BG01_1122 PF00356 Bacterial regulatory proteins, lacI family BG01_1122 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BG01_1123 PF00155 Aminotransferase class I and II BG01_1125 PF00512 His Kinase A (phospho-acceptor) domain BG01_1125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_1127 PF14040 Deoxyribonuclease NucA/NucB BG01_1129 PF01717 Cobalamin-independent synthase, Catalytic domain BG01_1129 PF08267 Cobalamin-independent synthase, N-terminal domain BG01_113 PF01026 TatD related DNase BG01_1131 PF07690 Major Facilitator Superfamily BG01_1136 PF14177 YkyB-like protein BG01_1137 PF02541 Ppx/GppA phosphatase family BG01_1138 PF17941 Polyphosphate kinase C-terminal domain 1 BG01_1138 PF02503 Polyphosphate kinase middle domain BG01_1138 PF13090 Polyphosphate kinase C-terminal domain 2 BG01_1138 PF13089 Polyphosphate kinase N-terminal domain BG01_114 PF13662 Toprim domain BG01_114 PF13331 Domain of unknown function (DUF4093) BG01_1140 PF10518 TAT (twin-arginine translocation) pathway signal sequence BG01_1140 PF00149 Calcineurin-like phosphoesterase BG01_1142 PF10388 EAL-domain associated signalling protein domain BG01_1142 PF00563 EAL domain BG01_1145 PF08796 Protein of unknown function (DUF1797) BG01_1147 PF04308 Ribonuclease H-like BG01_115 PF00398 Ribosomal RNA adenine dimethylase BG01_1150 PF03466 LysR substrate binding domain BG01_1150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG01_1151 PF14602 Hexapeptide repeat of succinyl-transferase BG01_1151 PF00132 Bacterial transferase hexapeptide (six repeats) BG01_1151 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal BG01_1152 PF01546 Peptidase family M20/M25/M40 BG01_1152 PF07687 Peptidase dimerisation domain BG01_1154 PF02080 TrkA-C domain BG01_1154 PF02254 TrkA-N domain BG01_1155 PF00753 Metallo-beta-lactamase superfamily BG01_1155 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BG01_1155 PF17770 Ribonuclease J C-terminal domain BG01_1158 PF01327 Polypeptide deformylase BG01_116 PF05582 YabG peptidase U57 BG01_1160 PF00676 Dehydrogenase E1 component BG01_1161 PF02780 Transketolase, C-terminal domain BG01_1161 PF02779 Transketolase, pyrimidine binding domain BG01_1162 PF00364 Biotin-requiring enzyme BG01_1162 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BG01_1162 PF02817 e3 binding domain BG01_1163 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG01_1163 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BG01_117 PF06257 Biofilm formation stimulator VEG BG01_1171 PF01276 Orn/Lys/Arg decarboxylase, major domain BG01_1171 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BG01_1172 PF05256 Uncharacterised protein family (UPF0223) BG01_1173 PF06335 Protein of unknown function (DUF1054) BG01_1175 PF00459 Inositol monophosphatase family BG01_1178 PF14036 YlaH-like protein BG01_118 PF00269 Small, acid-soluble spore proteins, alpha/beta type BG01_1180 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) BG01_1182 PF13638 PIN domain BG01_1182 PF02562 PhoH-like protein BG01_1184 PF07408 Protein of unknown function (DUF1507) BG01_1185 PF01098 Cell cycle protein BG01_1186 PF00364 Biotin-requiring enzyme BG01_1186 PF02785 Biotin carboxylase C-terminal domain BG01_1186 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BG01_1186 PF00682 HMGL-like BG01_1186 PF02436 Conserved carboxylase domain BG01_1186 PF00289 Biotin carboxylase, N-terminal domain BG01_1187 PF02628 Cytochrome oxidase assembly protein BG01_1188 PF01040 UbiA prenyltransferase family BG01_1189 PF00034 Cytochrome c BG01_1189 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BG01_1189 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BG01_119 PF00288 GHMP kinases N terminal domain BG01_119 PF08544 GHMP kinases C terminal BG01_1190 PF00115 Cytochrome C and Quinol oxidase polypeptide I BG01_1191 PF00510 Cytochrome c oxidase subunit III BG01_1192 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BG01_1193 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) BG01_1194 PF00795 Carbon-nitrogen hydrolase BG01_1195 PF08868 YugN-like family BG01_1196 PF00188 Cysteine-rich secretory protein family BG01_1196 PF14504 CAP-associated N-terminal BG01_1197 PF14071 Putative coat protein BG01_1198 PF14003 YlbE-like protein BG01_1199 PF00300 Histidine phosphatase superfamily (branch 1) BG01_120 PF09182 Bacterial purine repressor, N-terminal BG01_120 PF00156 Phosphoribosyl transferase domain BG01_1200 PF06133 Control of competence regulator ComK, YlbF/YmcA BG01_1201 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) BG01_1205 PF07670 Nucleoside recognition BG01_1206 PF01467 Cytidylyltransferase-like BG01_1207 PF01734 Patatin-like phospholipase BG01_1208 PF13180 PDZ domain BG01_1208 PF05362 Lon protease (S16) C-terminal proteolytic domain BG01_1209 PF05636 HIGH Nucleotidyl Transferase BG01_121 PF01042 Endoribonuclease L-PSP BG01_1210 PF14659 Phage integrase, N-terminal SAM-like domain BG01_1210 PF00589 Phage integrase family BG01_1214 PF01381 Helix-turn-helix BG01_1218 PF01381 Helix-turn-helix BG01_122 PF04026 SpoVG BG01_1224 PF01695 IstB-like ATP binding protein BG01_1224 PF07319 Primosomal protein DnaI N-terminus BG01_1229 PF04539 Sigma-70 region 3 BG01_1229 PF04545 Sigma-70, region 4 BG01_1229 PF04542 Sigma-70 region 2 BG01_123 PF00132 Bacterial transferase hexapeptide (six repeats) BG01_123 PF00483 Nucleotidyl transferase BG01_1234 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG01_124 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BG01_124 PF14572 Phosphoribosyl synthetase-associated domain BG01_1244 PF00589 Phage integrase family BG01_1245 PF10137 Predicted nucleotide-binding protein containing TIR-like domain BG01_1249 PF03354 Phage Terminase BG01_125 PF01195 Peptidyl-tRNA hydrolase BG01_1251 PF00574 Clp protease BG01_1268 PF05105 Bacteriophage holin family BG01_1269 PF01510 N-acetylmuramoyl-L-alanine amidase BG01_1269 PF12123 N-acetylmuramoyl-l-alanine amidase BG01_127 PF17757 UvrB interaction domain BG01_127 PF02559 CarD-like/TRCF domain BG01_127 PF00270 DEAD/DEAH box helicase BG01_127 PF03461 TRCF domain BG01_127 PF00271 Helicase conserved C-terminal domain BG01_1278 PF02620 Large ribosomal RNA subunit accumulation protein YceD BG01_1279 PF01783 Ribosomal L32p protein family BG01_128 PF15714 Stage V sporulation protein T C-terminal, transcription factor BG01_128 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BG01_1281 PF00583 Acetyltransferase (GNAT) family BG01_1282 PF02558 Ketopantoate reductase PanE/ApbA BG01_1282 PF08546 Ketopantoate reductase PanE/ApbA C terminal BG01_1283 PF10079 Bacillithiol biosynthesis BshC BG01_1284 PF01795 MraW methylase family BG01_1285 PF04977 Septum formation initiator BG01_1287 PF03793 PASTA domain BG01_1287 PF03717 Penicillin-binding Protein dimerisation domain BG01_1287 PF00905 Penicillin binding protein transpeptidase domain BG01_1288 PF08245 Mur ligase middle domain BG01_1288 PF02875 Mur ligase family, glutamate ligase domain BG01_1288 PF01225 Mur ligase family, catalytic domain BG01_1289 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 BG01_1289 PF00953 Glycosyl transferase family 4 BG01_129 PF01943 Polysaccharide biosynthesis protein BG01_129 PF14667 Polysaccharide biosynthesis C-terminal domain BG01_1290 PF08245 Mur ligase middle domain BG01_1290 PF02875 Mur ligase family, glutamate ligase domain BG01_1291 PF01098 Cell cycle protein BG01_1292 PF03033 Glycosyltransferase family 28 N-terminal domain BG01_1292 PF04101 Glycosyltransferase family 28 C-terminal domain BG01_1293 PF01565 FAD binding domain BG01_1293 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BG01_1294 PF08478 POTRA domain, FtsQ-type BG01_1294 PF03799 Cell division protein FtsQ BG01_1295 PF02491 SHS2 domain inserted in FTSA BG01_1296 PF12327 FtsZ family, C-terminal domain BG01_1296 PF00091 Tubulin/FtsZ family, GTPase domain BG01_1297 PF03419 Sporulation factor SpoIIGA BG01_1298 PF04542 Sigma-70 region 2 BG01_1298 PF04545 Sigma-70, region 4 BG01_1299 PF04545 Sigma-70, region 4 BG01_1299 PF04539 Sigma-70 region 3 BG01_1299 PF04542 Sigma-70 region 2 BG01_13 PF00535 Glycosyl transferase family 2 BG01_130 PF03819 MazG nucleotide pyrophosphohydrolase domain BG01_130 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BG01_1300 PF05239 PRC-barrel domain BG01_1302 PF01168 Alanine racemase, N-terminal domain BG01_1303 PF04472 Cell division protein SepF BG01_1304 PF02325 YGGT family BG01_1305 PF01479 S4 domain BG01_1305 PF17774 Putative RNA-binding domain in YlmH BG01_1306 PF05103 DivIVA protein BG01_1307 PF06827 Zinc finger found in FPG and IleRS BG01_1307 PF00133 tRNA synthetases class I (I, L, M and V) BG01_1307 PF08264 Anticodon-binding domain of tRNA BG01_1309 PF01252 Signal peptidase (SPase) II BG01_131 PF01479 S4 domain BG01_1310 PF01479 S4 domain BG01_1310 PF00849 RNA pseudouridylate synthase BG01_1311 PF00156 Phosphoribosyl transferase domain BG01_1312 PF00860 Permease family BG01_1313 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BG01_1313 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BG01_1314 PF01979 Amidohydrolase family BG01_1315 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BG01_1315 PF00117 Glutamine amidotransferase class-I BG01_1316 PF02142 MGS-like domain BG01_1316 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BG01_1316 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BG01_1317 PF00175 Oxidoreductase NAD-binding domain BG01_1317 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B BG01_1318 PF01180 Dihydroorotate dehydrogenase BG01_1319 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BG01_132 PF07873 YabP family BG01_1320 PF00156 Phosphoribosyl transferase domain BG01_1326 PF00557 Metallopeptidase family M24 BG01_1326 PF01321 Creatinase/Prolidase N-terminal domain BG01_1328 PF00689 Cation transporting ATPase, C-terminus BG01_1328 PF00690 Cation transporter/ATPase, N-terminus BG01_1329 PF08340 Domain of unknown function (DUF1732) BG01_1329 PF03755 YicC-like family, N-terminal region BG01_133 PF09578 Spore cortex protein YabQ (Spore_YabQ) BG01_1330 PF04025 Domain of unknown function (DUF370) BG01_1331 PF00625 Guanylate kinase BG01_1332 PF01192 RNA polymerase Rpb6 BG01_1333 PF02441 Flavoprotein BG01_1333 PF04127 DNA / pantothenate metabolism flavoprotein BG01_1334 PF04851 Type III restriction enzyme, res subunit BG01_1334 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BG01_1334 PF18074 Primosomal protein N C-terminal domain BG01_1334 PF17764 3′ DNA-binding domain (3′BD) BG01_1334 PF00271 Helicase conserved C-terminal domain BG01_1335 PF01327 Polypeptide deformylase BG01_1336 PF00551 Formyl transferase BG01_1336 PF02911 Formyl transferase, C-terminal domain BG01_1337 PF01189 16S rRNA methyltransferase RsmB/F BG01_1337 PF01029 NusB family BG01_1338 PF04055 Radical SAM superfamily BG01_1340 PF03793 PASTA domain BG01_1340 PF00069 Protein kinase domain BG01_1341 PF03193 RsgA GTPase BG01_1341 PF16745 RsgA N-terminal domain BG01_1342 PF00834 Ribulose-phosphate 3 epimerase family BG01_1343 PF04263 Thiamin pyrophosphokinase, catalytic domain BG01_1343 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain BG01_1344 PF00830 Ribosomal L28 family BG01_1345 PF03780 Asp23 family, cell envelope-related function BG01_1346 PF13684 Dihydroxyacetone kinase family BG01_1346 PF02734 DAK2 domain BG01_1347 PF00271 Helicase conserved C-terminal domain BG01_1347 PF00270 DEAD/DEAH box helicase BG01_1347 PF17191 RecG wedge domain BG01_1348 PF03061 Thioesterase superfamily BG01_1349 PF02504 Fatty acid synthesis protein BG01_135 PF00575 S1 RNA binding domain BG01_1350 PF00698 Acyl transferase domain BG01_1352 PF00550 Phosphopantetheine attachment site BG01_1353 PF00035 Double-stranded RNA binding motif BG01_1353 PF14622 Ribonuclease-III-like BG01_1354 PF02463 RecF/RecN/SMC N terminal domain BG01_1354 PF06470 SMC proteins Flexible Hinge Domain BG01_1355 PF00448 SRP54-type protein, GTPase domain BG01_1355 PF02881 SRP54-type protein, helical bundle domain BG01_1356 PF04297 Putative helix-turn-helix protein, YlxM / p13 like BG01_1357 PF00448 SRP54-type protein, GTPase domain BG01_1357 PF02978 Signal peptide binding domain BG01_1357 PF02881 SRP54-type protein, helical bundle domain BG01_1358 PF00886 Ribosomal protein S16 BG01_1360 PF01782 RimM N-terminal domain BG01_1360 PF05239 PRC-barrel domain BG01_1361 PF01746 tRNA (Guanine-1)-methyltransferase BG01_1362 PF01245 Ribosomal protein L19 BG01_1363 PF10502 Signal peptidase, peptidase S26 BG01_1364 PF01926 50S ribosome-binding GTPase BG01_1365 PF01351 Ribonuclease HII BG01_1366 PF08442 ATP-grasp domain BG01_1366 PF00549 CoA-ligase BG01_1367 PF02629 CoA binding domain BG01_1367 PF00549 CoA-ligase BG01_1369 PF01131 DNA topoisomerase BG01_1369 PF01751 Toprim domain BG01_1369 PF01396 Topoisomerase DNA binding C4 zinc finger BG01_1370 PF01134 Glucose inhibited division protein A BG01_1371 PF02899 Phage integrase, N-terminal SAM-like domain BG01_1371 PF00589 Phage integrase family BG01_1372 PF00227 Proteasome subunit BG01_1373 PF10431 C-terminal, D2-small domain, of ClpB protein BG01_1373 PF07724 AAA domain (Cdc48 subfamily) BG01_1373 PF00004 ATPase family associated with various cellular activities (AAA) BG01_1374 PF08222 CodY helix-turn-helix domain BG01_1374 PF06018 CodY GAF-like domain BG01_1375 PF00318 Ribosomal protein S2 BG01_1376 PF00889 Elongation factor TS BG01_1377 PF00696 Amino acid kinase family BG01_1378 PF01765 Ribosome recycling factor BG01_1379 PF01255 Putative undecaprenyl diphosphate synthase BG01_138 PF07228 Stage II sporulation protein E (SpoIIE) BG01_1381 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BG01_1381 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BG01_1381 PF13288 DXP reductoisomerase C-terminal domain BG01_1382 PF17820 PDZ domain BG01_1382 PF02163 Peptidase family M50 BG01_1383 PF04073 Aminoacyl-tRNA editing domain BG01_1383 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BG01_1383 PF03129 Anticodon binding domain BG01_1384 PF02811 PHP domain BG01_1384 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BG01_1384 PF07733 Bacterial DNA polymerase III alpha NTPase domain BG01_1384 PF14579 Helix-hairpin-helix motif BG01_1384 PF14480 DNA polymerase III polC-type N-terminus I BG01_1384 PF00929 Exonuclease BG01_1384 PF11490 DNA polymerase III polC-type N-terminus II BG01_1385 PF17384 RimP C-terminal SH3 domain BG01_1385 PF02576 RimP N-terminal domain BG01_1386 PF08529 NusA N-terminal domain BG01_1386 PF13184 NusA-like KH domain BG01_1386 PF00575 S1 RNA binding domain BG01_1387 PF04296 Protein of unknown function (DUF448) BG01_1388 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family BG01_1389 PF00009 Elongation factor Tu GTP binding domain BG01_1389 PF04760 Translation initiation factor IF-2, N-terminal region BG01_1389 PF11987 Translation-initiation factor 2 BG01_139 PF01171 PP-loop family BG01_139 PF11734 TilS substrate C-terminal domain BG01_139 PF09179 TilS substrate binding domain BG01_1390 PF04456 Protein of unknown function (DUF503) BG01_1391 PF02033 Ribosome-binding factor A BG01_1392 PF16198 tRNA pseudouridylate synthase B C-terminal domain BG01_1392 PF01509 TruB family pseudouridylate synthase (N terminal domain) BG01_1393 PF01687 Riboflavin kinase BG01_1393 PF06574 FAD synthetase BG01_1394 PF00312 Ribosomal protein S15 BG01_1395 PF03725 3' exoribonuclease family, domain 2 BG01_1395 PF00013 KH domain BG01_1395 PF00575 S1 RNA binding domain BG01_1395 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BG01_1395 PF01138 3' exoribonuclease family, domain 1 BG01_1396 PF01522 Polysaccharide deacetylase BG01_1397 PF05193 Peptidase M16 inactive domain BG01_1397 PF00675 Insulinase (Peptidase family M16) BG01_1398 PF05239 PRC-barrel domain BG01_1399 PF16924 Dipicolinate synthase subunit A N-terminal domain BG01_1399 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BG01_14 PF00440 Bacterial regulatory proteins, tetR family BG01_1400 PF02441 Flavoprotein BG01_1401 PF02774 Semialdehyde dehydrogenase, dimerisation domain BG01_1401 PF01118 Semialdehyde dehydrogenase, NAD binding domain BG01_1402 PF13840 ACT domain BG01_1402 PF00696 Amino acid kinase family BG01_1403 PF00701 Dihydrodipicolinate synthetase family BG01_1404 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BG01_1404 PF00753 Metallo-beta-lactamase superfamily BG01_1404 PF17770 Ribonuclease J C-terminal domain BG01_1405 PF00574 Clp protease BG01_1406 PF14035 YlzJ-like protein BG01_1407 PF09397 Ftsk gamma domain BG01_1407 PF17854 FtsK alpha domain BG01_1407 PF01580 FtsK/SpoIIIE family BG01_1408 PF00392 Bacterial regulatory proteins, gntR family BG01_1408 PF07702 UTRA domain BG01_141 PF01434 Peptidase family M41 BG01_141 PF00004 ATPase family associated with various cellular activities (AAA) BG01_141 PF17862 AAA+ lid domain BG01_141 PF06480 FtsH Extracellular BG01_1414 PF05193 Peptidase M16 inactive domain BG01_1415 PF05193 Peptidase M16 inactive domain BG01_1415 PF00675 Insulinase (Peptidase family M16) BG01_1417 PF11588 Protein of unknown function (DUF3243) BG01_1418 PF11868 Protein of unknown function (DUF3388) BG01_1419 PF13464 Domain of unknown function (DUF4115) BG01_142 PF03309 Type III pantothenate kinase BG01_1420 PF01066 CDP-alcohol phosphatidyltransferase BG01_1421 PF02464 Competence-damaged protein BG01_1421 PF18146 Damage-inducible protein CinA KH domain BG01_1421 PF00994 Probable molybdopterin binding domain BG01_1422 PF00154 recA bacterial DNA recombination protein BG01_1423 PF00154 recA bacterial DNA recombination protein BG01_1424 PF12072 Domain of unknown function (DUF3552) BG01_1424 PF01966 HD domain BG01_1424 PF00013 KH domain BG01_1425 PF13277 YmdB-like protein BG01_1426 PF04232 Stage V sporulation protein S (SpoVS) BG01_1427 PF01244 Membrane dipeptidase (Peptidase family M19) BG01_1428 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg BG01_1428 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase BG01_1428 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II BG01_1429 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BG01_143 PF01430 Hsp33 protein BG01_1430 PF01938 TRAM domain BG01_1430 PF04055 Radical SAM superfamily BG01_1430 PF00919 Uncharacterized protein family UPF0004 BG01_1431 PF06133 Control of competence regulator ComK, YlbF/YmcA BG01_1432 PF10628 Outer spore coat protein E (CotE) BG01_1433 PF05188 MutS domain II BG01_1433 PF00488 MutS domain V BG01_1433 PF05192 MutS domain III BG01_1433 PF05190 MutS family domain IV BG01_1433 PF01624 MutS domain I BG01_1434 PF01119 DNA mismatch repair protein, C-terminal domain BG01_1434 PF08676 MutL C terminal dimerisation domain BG01_1435 PF00005 ABC transporter BG01_1438 PF00486 Transcriptional regulatory protein, C terminal BG01_1438 PF00072 Response regulator receiver domain BG01_1439 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_1439 PF00512 His Kinase A (phospho-acceptor) domain BG01_144 PF00291 Pyridoxal-phosphate dependent enzyme BG01_1440 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family BG01_1442 PF00350 Dynamin family BG01_1443 PF00884 Sulfatase BG01_1444 PF03275 UDP-galactopyranose mutase BG01_1445 PF07486 Cell Wall Hydrolase BG01_1446 PF00082 Subtilase family BG01_1447 PF00388 Phosphatidylinositol-specific phospholipase C, X domain BG01_1449 PF02585 GlcNAc-PI de-N-acetylase BG01_145 PF04715 Anthranilate synthase component I, N terminal region BG01_145 PF00425 chorismate binding enzyme BG01_1450 PF00364 Biotin-requiring enzyme BG01_1450 PF00561 alpha/beta hydrolase fold BG01_1451 PF00155 Aminotransferase class I and II BG01_1451 PF00392 Bacterial regulatory proteins, gntR family BG01_1452 PF03788 LrgA family BG01_1453 PF04172 LrgB-like family BG01_1454 PF10787 Uncharacterised protein from bacillus cereus group BG01_1456 PF00990 Diguanylate cyclase, GGDEF domain BG01_1456 PF03707 Bacterial signalling protein N terminal repeat BG01_1456 PF00563 EAL domain BG01_1457 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG01_1458 PF00561 alpha/beta hydrolase fold BG01_146 PF00117 Glutamine amidotransferase class-I BG01_1462 PF01546 Peptidase family M20/M25/M40 BG01_1462 PF07687 Peptidase dimerisation domain BG01_1463 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain BG01_1463 PF00730 HhH-GPD superfamily base excision DNA repair protein BG01_1464 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BG01_1464 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BG01_1465 PF02805 Metal binding domain of Ada BG01_1465 PF12833 Helix-turn-helix domain BG01_1466 PF03372 Endonuclease/Exonuclease/phosphatase family BG01_1468 PF01497 Periplasmic binding protein BG01_1469 PF01032 FecCD transport family BG01_147 PF01063 Amino-transferase class IV BG01_1470 PF01032 FecCD transport family BG01_1471 PF00005 ABC transporter BG01_1472 PF00756 Putative esterase BG01_1474 PF02583 Metal-sensitive transcriptional repressor BG01_1475 PF00403 Heavy-metal-associated domain BG01_1476 PF00403 Heavy-metal-associated domain BG01_1477 PF00216 Bacterial DNA-binding protein BG01_1478 PF01226 Formate/nitrite transporter BG01_1479 PF10518 TAT (twin-arginine translocation) pathway signal sequence BG01_1479 PF00149 Calcineurin-like phosphoesterase BG01_148 PF00809 Pterin binding enzyme BG01_1481 PF00704 Glycosyl hydrolases family 18 BG01_1481 PF00041 Fibronectin type III domain BG01_1482 PF00324 Amino acid permease BG01_1485 PF04238 Protein of unknown function (DUF420) BG01_1486 PF00465 Iron-containing alcohol dehydrogenase BG01_1487 PF00465 Iron-containing alcohol dehydrogenase BG01_1488 PF08220 DeoR-like helix-turn-helix domain BG01_1488 PF00455 DeoR C terminal sensor domain BG01_1489 PF00294 pfkB family carbohydrate kinase BG01_149 PF02152 Dihydroneopterin aldolase BG01_1490 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BG01_1490 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BG01_1491 PF01476 LysM domain BG01_1491 PF06725 3D domain BG01_1494 PF17209 Hfq protein BG01_1498 PF00004 ATPase family associated with various cellular activities (AAA) BG01_1498 PF17866 AAA lid domain BG01_1499 PF03458 UPF0126 domain BG01_15 PF00873 AcrB/AcrD/AcrF family BG01_150 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BG01_1500 PF13167 GTP-binding GTPase N-terminal BG01_1500 PF01926 50S ribosome-binding GTPase BG01_1500 PF16360 GTP-binding GTPase Middle Region BG01_1501 PF16360 GTP-binding GTPase Middle Region BG01_1501 PF01926 50S ribosome-binding GTPase BG01_1501 PF13167 GTP-binding GTPase N-terminal BG01_1502 PF06838 Methionine gamma-lyase BG01_1503 PF13411 MerR HTH family regulatory protein BG01_1504 PF00120 Glutamine synthetase, catalytic domain BG01_1504 PF03951 Glutamine synthetase, beta-Grasp domain BG01_1505 PF00589 Phage integrase family BG01_1505 PF02899 Phage integrase, N-terminal SAM-like domain BG01_1509 PF01381 Helix-turn-helix BG01_151 PF01381 Helix-turn-helix BG01_152 PF01207 Dihydrouridine synthase (Dus) BG01_1524 PF00145 C-5 cytosine-specific DNA methylase BG01_1525 PF02511 Thymidylate synthase complementing protein BG01_153 PF01336 OB-fold nucleic acid binding domain BG01_153 PF00152 tRNA synthetases class II (D, K and N) BG01_1533 PF08281 Sigma-70, region 4 BG01_1565 PF05105 Bacteriophage holin family BG01_1566 PF01471 Putative peptidoglycan binding domain BG01_1566 PF01510 N-acetylmuramoyl-L-alanine amidase BG01_1566 PF01476 LysM domain BG01_1574 PF03551 Transcriptional regulator PadR-like family BG01_1577 PF00717 Peptidase S24-like BG01_1577 PF01726 LexA DNA binding domain BG01_1578 PF00239 Resolvase, N terminal domain BG01_1579 PF05979 Bacterial protein of unknown function (DUF896) BG01_158 PF05848 CtsR N-terminal HTH domain BG01_158 PF17727 CtsR C-terminal dimerization domain BG01_1580 PF02872 5'-nucleotidase, C-terminal domain BG01_1580 PF00149 Calcineurin-like phosphoesterase BG01_1583 PF00005 ABC transporter BG01_1584 PF00528 Binding-protein-dependent transport system inner membrane component BG01_1585 PF00528 Binding-protein-dependent transport system inner membrane component BG01_1586 PF12323 Helix-turn-helix domain BG01_1586 PF01385 Probable transposase BG01_1586 PF07282 Putative transposase DNA-binding domain BG01_1587 PF00456 Transketolase, thiamine diphosphate binding domain BG01_1587 PF02779 Transketolase, pyrimidine binding domain BG01_1587 PF02780 Transketolase, C-terminal domain BG01_1588 PF10747 Sporulation inhibitor of replication protein SirA BG01_1589 PF03672 Uncharacterised protein family (UPF0154) BG01_159 PF02151 UvrB/uvrC motif BG01_1590 PF00664 ABC transporter transmembrane region BG01_1590 PF00005 ABC transporter BG01_1591 PF00664 ABC transporter transmembrane region BG01_1591 PF00005 ABC transporter BG01_1594 PF01471 Putative peptidoglycan binding domain BG01_1594 PF01510 N-acetylmuramoyl-L-alanine amidase BG01_1596 PF01925 Sulfite exporter TauE/SafE BG01_1598 PF00293 NUDIX domain BG01_1598 PF13344 Haloacid dehalogenase-like hydrolase BG01_1599 PF04172 LrgB-like family BG01_16 PF01625 Peptide methionine sulfoxide reductase BG01_16 PF01641 SelR domain BG01_160 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain BG01_1600 PF03788 LrgA family BG01_1601 PF03466 LysR substrate binding domain BG01_1601 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG01_1603 PF02683 Cytochrome C biogenesis protein transmembrane region BG01_1604 PF07301 Protein of unknown function (DUF1453) BG01_161 PF10431 C-terminal, D2-small domain, of ClpB protein BG01_161 PF00004 ATPase family associated with various cellular activities (AAA) BG01_161 PF07724 AAA domain (Cdc48 subfamily) BG01_161 PF17871 AAA lid domain BG01_161 PF02861 Clp amino terminal domain, pathogenicity island component BG01_1610 PF11084 Protein of unknown function (DUF2621) BG01_1614 PF01209 ubiE/COQ5 methyltransferase family BG01_1615 PF09021 HutP BG01_1616 PF00221 Aromatic amino acid lyase BG01_1617 PF17392 Urocanase C-terminal domain BG01_1617 PF17391 Urocanase N-terminal domain BG01_1617 PF01175 Urocanase Rossmann-like domain BG01_1618 PF01979 Amidohydrolase family BG01_1619 PF00491 Arginase family BG01_162 PF18073 Rubredoxin metal binding domain BG01_1620 PF02559 CarD-like/TRCF domain BG01_1621 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BG01_1622 PF01645 Conserved region in glutamate synthase BG01_1623 PF00474 Sodium:solute symporter family BG01_1624 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG01_1625 PF01738 Dienelactone hydrolase family BG01_1626 PF00512 His Kinase A (phospho-acceptor) domain BG01_1626 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_1626 PF00989 PAS fold BG01_1626 PF13426 PAS domain BG01_1626 PF13188 PAS domain BG01_1628 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BG01_1628 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BG01_163 PF02457 DisA bacterial checkpoint controller nucleotide-binding BG01_163 PF10635 DisA bacterial checkpoint controller linker region BG01_1634 PF05532 CsbD-like BG01_1637 PF00501 AMP-binding enzyme BG01_1637 PF13193 AMP-binding enzyme C-terminal domain BG01_1638 PF02632 BioY family BG01_1639 PF13193 AMP-binding enzyme C-terminal domain BG01_1639 PF00501 AMP-binding enzyme BG01_1640 PF02803 Thiolase, C-terminal domain BG01_1640 PF00108 Thiolase, N-terminal domain BG01_1642 PF00293 NUDIX domain BG01_1642 PF13344 Haloacid dehalogenase-like hydrolase BG01_1643 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BG01_1643 PF01411 tRNA synthetases class II (A) BG01_1643 PF02272 DHHA1 domain BG01_1645 PF07690 Major Facilitator Superfamily BG01_1648 PF01522 Polysaccharide deacetylase BG01_165 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BG01_1650 PF00694 Aconitase C-terminal domain BG01_1650 PF00330 Aconitase family (aconitate hydratase) BG01_1651 PF00005 ABC transporter BG01_1651 PF03412 Peptidase C39 family BG01_1651 PF00664 ABC transporter transmembrane region BG01_1653 PF00578 AhpC/TSA family BG01_1654 PF00929 Exonuclease BG01_1654 PF01336 OB-fold nucleic acid binding domain BG01_1654 PF02811 PHP domain BG01_1654 PF14579 Helix-hairpin-helix motif BG01_1654 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BG01_1654 PF07733 Bacterial DNA polymerase III alpha NTPase domain BG01_1654 PF11490 DNA polymerase III polC-type N-terminus II BG01_1655 PF13040 Fur-regulated basic protein B BG01_1656 PF08177 Small acid-soluble spore protein N family BG01_1658 PF01476 LysM domain BG01_1658 PF00704 Glycosyl hydrolases family 18 BG01_1659 PF03061 Thioesterase superfamily BG01_166 PF02542 YgbB family BG01_1660 PF01521 Iron-sulphur cluster biosynthesis BG01_1661 PF02660 Glycerol-3-phosphate acyltransferase BG01_1662 PF13597 Anaerobic ribonucleoside-triphosphate reductase BG01_1662 PF03477 ATP cone domain BG01_1663 PF04055 Radical SAM superfamily BG01_1664 PF00072 Response regulator receiver domain BG01_1664 PF00486 Transcriptional regulatory protein, C terminal BG01_1665 PF13180 PDZ domain BG01_1666 PF13380 CoA binding domain BG01_1667 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_1667 PF00986 DNA gyrase B subunit, carboxyl terminus BG01_1667 PF01751 Toprim domain BG01_1667 PF00204 DNA gyrase B BG01_1668 PF03989 DNA gyrase C-terminal domain, beta-propeller BG01_1668 PF00521 DNA gyrase/topoisomerase IV, subunit A BG01_1669 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BG01_1669 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BG01_167 PF00749 tRNA synthetases class I (E and Q), catalytic domain BG01_1671 PF13732 Domain of unknown function (DUF4162) BG01_1671 PF00005 ABC transporter BG01_1675 PF04542 Sigma-70 region 2 BG01_1675 PF08281 Sigma-70, region 4 BG01_1677 PF03816 Cell envelope-related transcriptional attenuator domain BG01_1678 PF00375 Sodium:dicarboxylate symporter family BG01_1679 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG01_168 PF06426 Serine acetyltransferase, N-terminal BG01_168 PF00132 Bacterial transferase hexapeptide (six repeats) BG01_1680 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG01_1681 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG01_1682 PF08241 Methyltransferase domain BG01_169 PF01406 tRNA synthetases class I (C) catalytic domain BG01_169 PF09190 DALR domain BG01_1690 PF03323 Bacillus/Clostridium GerA spore germination protein BG01_1692 PF00037 4Fe-4S binding domain BG01_1692 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BG01_1692 PF00384 Molybdopterin oxidoreductase BG01_1692 PF01568 Molydopterin dinucleotide binding domain BG01_1692 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BG01_1693 PF07849 Protein of unknown function (DUF1641) BG01_1694 PF10057 Uncharacterized conserved protein (DUF2294) BG01_1695 PF02634 FdhD/NarQ family BG01_1696 PF04055 Radical SAM superfamily BG01_1696 PF06463 Molybdenum Cofactor Synthesis C BG01_1697 PF01226 Formate/nitrite transporter BG01_1698 PF00899 ThiF family BG01_1699 PF03454 MoeA C-terminal region (domain IV) BG01_1699 PF03453 MoeA N-terminal region (domain I and II) BG01_1699 PF00994 Probable molybdopterin binding domain BG01_17 PF01594 AI-2E family transporter BG01_170 PF00636 Ribonuclease III domain BG01_1700 PF02391 MoaE protein BG01_1702 PF10609 NUBPL iron-transfer P-loop NTPase BG01_1705 PF06961 Protein of unknown function (DUF1294) BG01_1706 PF00892 EamA-like transporter family BG01_1707 PF02681 Divergent PAP2 family BG01_1708 PF13243 Squalene-hopene cyclase C-terminal domain BG01_1708 PF13249 Squalene-hopene cyclase N-terminal domain BG01_1709 PF14151 YfhD-like protein BG01_171 PF08032 RNA 2'-O ribose methyltransferase substrate binding BG01_171 PF00588 SpoU rRNA Methylase family BG01_1711 PF00171 Aldehyde dehydrogenase family BG01_1713 PF00474 Sodium:solute symporter family BG01_1714 PF01156 Inosine-uridine preferring nucleoside hydrolase BG01_1716 PF14698 Argininosuccinate lyase C-terminal BG01_1716 PF00206 Lyase BG01_1718 PF00106 short chain dehydrogenase BG01_172 PF05991 YacP-like NYN domain BG01_1720 PF00132 Bacterial transferase hexapeptide (six repeats) BG01_1723 PF00293 NUDIX domain BG01_1725 PF00258 Flavodoxin BG01_1727 PF00313 'Cold-shock' DNA-binding domain BG01_173 PF08281 Sigma-70, region 4 BG01_173 PF04542 Sigma-70 region 2 BG01_1731 PF13039 Protein of unknown function (DUF3900) BG01_1731 PF13037 Domain of unknown function (DUF3898) BG01_1733 PF04294 VanW like protein BG01_1734 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG01_1736 PF02308 MgtC family BG01_1737 PF08453 Peptidase family M9 N-terminal BG01_1737 PF01752 Collagenase BG01_1737 PF18496 Collagenase G catalytic helper subdomain BG01_1738 PF00378 Enoyl-CoA hydratase/isomerase BG01_1739 PF00535 Glycosyl transferase family 2 BG01_174 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BG01_1740 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BG01_1741 PF00132 Bacterial transferase hexapeptide (six repeats) BG01_1745 PF01565 FAD binding domain BG01_1745 PF02913 FAD linked oxidases, C-terminal domain BG01_1746 PF01758 Sodium Bile acid symporter family BG01_1748 PF04229 GrpB protein BG01_1749 PF04299 Putative FMN-binding domain BG01_175 PF02357 Transcription termination factor nusG BG01_175 PF00467 KOW motif BG01_1752 PF18801 response regulator aspartate phosphatase H, N terminal BG01_1753 PF02696 Uncharacterized ACR, YdiU/UPF0061 family BG01_1754 PF00107 Zinc-binding dehydrogenase BG01_1754 PF08240 Alcohol dehydrogenase GroES-like domain BG01_1755 PF01022 Bacterial regulatory protein, arsR family BG01_1756 PF01494 FAD binding domain BG01_1759 PF03009 Glycerophosphoryl diester phosphodiesterase family BG01_176 PF03946 Ribosomal protein L11, N-terminal domain BG01_176 PF00298 Ribosomal protein L11, RNA binding domain BG01_1762 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG01_1762 PF03466 LysR substrate binding domain BG01_1763 PF07690 Major Facilitator Superfamily BG01_1765 PF00144 Beta-lactamase BG01_1766 PF08439 Oligopeptidase F BG01_1766 PF01432 Peptidase family M3 BG01_1767 PF00797 N-acetyltransferase BG01_1768 PF00128 Alpha amylase, catalytic domain BG01_1768 PF09154 Domain of unknown function (DUF1939) BG01_177 PF00687 Ribosomal protein L1p/L10e family BG01_1770 PF01713 Smr domain BG01_1770 PF00488 MutS domain V BG01_1773 PF08240 Alcohol dehydrogenase GroES-like domain BG01_1773 PF00107 Zinc-binding dehydrogenase BG01_1774 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG01_1774 PF03466 LysR substrate binding domain BG01_1776 PF10901 Protein of unknown function (DUF2690) BG01_1779 PF13170 Protein of unknown function (DUF4003) BG01_178 PF00466 Ribosomal protein L10 BG01_1780 PF02567 Phenazine biosynthesis-like protein BG01_1781 PF05675 Protein of unknown function (DUF817) BG01_1782 PF01032 FecCD transport family BG01_1783 PF01032 FecCD transport family BG01_1785 PF01497 Periplasmic binding protein BG01_1789 PF03600 Citrate transporter BG01_179 PF00542 Ribosomal protein L7/L12 C-terminal domain BG01_179 PF16320 Ribosomal protein L7/L12 dimerisation domain BG01_1790 PF08830 Protein of unknown function (DUF1806) BG01_1791 PF02585 GlcNAc-PI de-N-acetylase BG01_1796 PF07690 Major Facilitator Superfamily BG01_1797 PF00324 Amino acid permease BG01_1798 PF08240 Alcohol dehydrogenase GroES-like domain BG01_1798 PF00107 Zinc-binding dehydrogenase BG01_1799 PF00753 Metallo-beta-lactamase superfamily BG01_18 PF04172 LrgB-like family BG01_180 PF05175 Methyltransferase small domain BG01_1807 PF00144 Beta-lactamase BG01_181 PF04561 RNA polymerase Rpb2, domain 2 BG01_181 PF04560 RNA polymerase Rpb2, domain 7 BG01_181 PF04565 RNA polymerase Rpb2, domain 3 BG01_181 PF10385 RNA polymerase beta subunit external 1 domain BG01_181 PF00562 RNA polymerase Rpb2, domain 6 BG01_181 PF04563 RNA polymerase beta subunit BG01_1812 PF01183 Glycosyl hydrolases family 25 BG01_1812 PF01471 Putative peptidoglycan binding domain BG01_1813 PF00753 Metallo-beta-lactamase superfamily BG01_1816 PF03063 Prismane/CO dehydrogenase family BG01_1819 PF13732 Domain of unknown function (DUF4162) BG01_1819 PF00005 ABC transporter BG01_182 PF04983 RNA polymerase Rpb1, domain 3 BG01_182 PF00623 RNA polymerase Rpb1, domain 2 BG01_182 PF04997 RNA polymerase Rpb1, domain 1 BG01_182 PF05000 RNA polymerase Rpb1, domain 4 BG01_182 PF04998 RNA polymerase Rpb1, domain 5 BG01_1820 PF01061 ABC-2 type transporter BG01_1821 PF05656 Protein of unknown function (DUF805) BG01_1825 PF00440 Bacterial regulatory proteins, tetR family BG01_1827 PF00535 Glycosyl transferase family 2 BG01_1827 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 BG01_1828 PF04542 Sigma-70 region 2 BG01_1829 PF12791 Anti-sigma factor N-terminus BG01_183 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family BG01_1831 PF01522 Polysaccharide deacetylase BG01_1831 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain BG01_1832 PF01022 Bacterial regulatory protein, arsR family BG01_1835 PF01638 HxlR-like helix-turn-helix BG01_1836 PF02525 Flavodoxin-like fold BG01_1838 PF00501 AMP-binding enzyme BG01_1838 PF13193 AMP-binding enzyme C-terminal domain BG01_184 PF00164 Ribosomal protein S12/S23 BG01_1842 PF02567 Phenazine biosynthesis-like protein BG01_1848 PF00248 Aldo/keto reductase family BG01_1849 PF01638 HxlR-like helix-turn-helix BG01_185 PF00177 Ribosomal protein S7p/S5e BG01_1850 PF01638 HxlR-like helix-turn-helix BG01_1853 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BG01_1853 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BG01_1854 PF00392 Bacterial regulatory proteins, gntR family BG01_1854 PF07702 UTRA domain BG01_1855 PF01638 HxlR-like helix-turn-helix BG01_1856 PF03960 ArsC family BG01_186 PF03144 Elongation factor Tu domain 2 BG01_186 PF00009 Elongation factor Tu GTP binding domain BG01_186 PF03764 Elongation factor G, domain IV BG01_186 PF14492 Elongation Factor G, domain II BG01_186 PF00679 Elongation factor G C-terminus BG01_1862 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG01_1863 PF03928 Haem-degrading BG01_1865 PF07690 Major Facilitator Superfamily BG01_1866 PF00248 Aldo/keto reductase family BG01_187 PF03144 Elongation factor Tu domain 2 BG01_187 PF03143 Elongation factor Tu C-terminal domain BG01_187 PF00009 Elongation factor Tu GTP binding domain BG01_1870 PF03413 Peptidase propeptide and YPEB domain BG01_1870 PF01447 Thermolysin metallopeptidase, catalytic domain BG01_1870 PF07504 Fungalysin/Thermolysin Propeptide Motif BG01_1870 PF02868 Thermolysin metallopeptidase, alpha-helical domain BG01_1871 PF00106 short chain dehydrogenase BG01_1872 PF00698 Acyl transferase domain BG01_1872 PF16197 Ketoacyl-synthetase C-terminal extension BG01_1872 PF00107 Zinc-binding dehydrogenase BG01_1872 PF08240 Alcohol dehydrogenase GroES-like domain BG01_1872 PF02801 Beta-ketoacyl synthase, C-terminal domain BG01_1872 PF08659 KR domain BG01_1872 PF00550 Phosphopantetheine attachment site BG01_1872 PF14765 Polyketide synthase dehydratase BG01_1872 PF00109 Beta-ketoacyl synthase, N-terminal domain BG01_1874 PF00296 Luciferase-like monooxygenase BG01_1875 PF00107 Zinc-binding dehydrogenase BG01_1875 PF08240 Alcohol dehydrogenase GroES-like domain BG01_1876 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BG01_1876 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BG01_1877 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BG01_1877 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BG01_1878 PF02779 Transketolase, pyrimidine binding domain BG01_1878 PF02780 Transketolase, C-terminal domain BG01_1878 PF00456 Transketolase, thiamine diphosphate binding domain BG01_1879 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BG01_1879 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BG01_188 PF00338 Ribosomal protein S10p/S20e BG01_1880 PF00923 Transaldolase/Fructose-6-phosphate aldolase BG01_1881 PF02447 GntP family permease BG01_1882 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BG01_1882 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BG01_1883 PF10282 Lactonase, 7-bladed beta-propeller BG01_1884 PF06906 Protein of unknown function (DUF1272) BG01_1885 PF00805 Pentapeptide repeats (8 copies) BG01_1886 PF00892 EamA-like transporter family BG01_1887 PF13411 MerR HTH family regulatory protein BG01_1888 PF00571 CBS domain BG01_1888 PF01595 Cyclin M transmembrane N-terminal domain BG01_1888 PF03471 Transporter associated domain BG01_189 PF00297 Ribosomal protein L3 BG01_1890 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BG01_1894 PF07690 Major Facilitator Superfamily BG01_1896 PF08241 Methyltransferase domain BG01_19 PF03788 LrgA family BG01_190 PF00573 Ribosomal protein L4/L1 family BG01_1900 PF01594 AI-2E family transporter BG01_1901 PF13288 DXP reductoisomerase C-terminal domain BG01_1901 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BG01_1901 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BG01_1902 PF00579 tRNA synthetases class I (W and Y) BG01_1904 PF00005 ABC transporter BG01_1907 PF12464 Maltose acetyltransferase BG01_1907 PF14602 Hexapeptide repeat of succinyl-transferase BG01_1908 PF07690 Major Facilitator Superfamily BG01_1909 PF00480 ROK family BG01_191 PF00276 Ribosomal protein L23 BG01_1910 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG01_1912 PF00293 NUDIX domain BG01_1912 PF13344 Haloacid dehalogenase-like hydrolase BG01_1917 PF13419 Haloacid dehalogenase-like hydrolase BG01_192 PF03947 Ribosomal Proteins L2, C-terminal domain BG01_192 PF00181 Ribosomal Proteins L2, RNA binding domain BG01_1922 PF00005 ABC transporter BG01_1926 PF00224 Pyruvate kinase, barrel domain BG01_1926 PF02887 Pyruvate kinase, alpha/beta domain BG01_1926 PF00391 PEP-utilising enzyme, mobile domain BG01_1928 PF00881 Nitroreductase family BG01_1929 PF01638 HxlR-like helix-turn-helix BG01_193 PF00203 Ribosomal protein S19 BG01_1932 PF13393 Histidyl-tRNA synthetase BG01_1932 PF03129 Anticodon binding domain BG01_1933 PF04073 Aminoacyl-tRNA editing domain BG01_1934 PF02660 Glycerol-3-phosphate acyltransferase BG01_1935 PF01381 Helix-turn-helix BG01_1938 PF04231 Endonuclease I BG01_1939 PF03606 C4-dicarboxylate anaerobic carrier BG01_194 PF00237 Ribosomal protein L22p/L17e BG01_1940 PF03737 Aldolase/RraA BG01_1943 PF02361 Cobalt transport protein BG01_1944 PF00005 ABC transporter BG01_1946 PF14256 YwiC-like protein BG01_195 PF07650 KH domain BG01_195 PF00189 Ribosomal protein S3, C-terminal domain BG01_1950 PF02525 Flavodoxin-like fold BG01_1952 PF02667 Short chain fatty acid transporter BG01_1953 PF17440 Thiol-activated cytolysin beta sandwich domain BG01_1953 PF01289 Thiol-activated cytolysin BG01_1954 PF00440 Bacterial regulatory proteins, tetR family BG01_1955 PF00893 Small Multidrug Resistance protein BG01_1956 PF17314 Family of unknown function (DUF5360) BG01_1958 PF13396 Phospholipase_D-nuclease N-terminal BG01_1959 PF00005 ABC transporter BG01_1959 PF13732 Domain of unknown function (DUF4162) BG01_196 PF00252 Ribosomal protein L16p/L10e BG01_1960 PF12679 ABC-2 family transporter protein BG01_1963 PF07690 Major Facilitator Superfamily BG01_1964 PF01047 MarR family BG01_1965 PF12697 Alpha/beta hydrolase family BG01_1966 PF07690 Major Facilitator Superfamily BG01_1967 PF14044 NETI protein BG01_197 PF00831 Ribosomal L29 protein BG01_1974 PF00395 S-layer homology domain BG01_1976 PF01804 Penicillin amidase BG01_1977 PF01497 Periplasmic binding protein BG01_1977 PF12833 Helix-turn-helix domain BG01_1978 PF07883 Cupin domain BG01_198 PF00366 Ribosomal protein S17 BG01_1981 PF04542 Sigma-70 region 2 BG01_1981 PF08281 Sigma-70, region 4 BG01_1984 PF00266 Aminotransferase class-V BG01_1985 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BG01_1985 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BG01_1985 PF01842 ACT domain BG01_1988 PF13520 Amino acid permease BG01_1989 PF01037 Lrp/AsnC ligand binding domain BG01_199 PF00238 Ribosomal protein L14p/L23e BG01_1990 PF00857 Isochorismatase family BG01_1991 PF00586 AIR synthase related protein, N-terminal domain BG01_1991 PF02769 AIR synthase related protein, C-terminal domain BG01_1992 PF17788 HypF Kae1-like domain BG01_1992 PF00708 Acylphosphatase BG01_1992 PF07503 HypF finger BG01_1992 PF01300 Telomere recombination BG01_1993 PF00202 Aminotransferase class-III BG01_1994 PF03315 Serine dehydratase beta chain BG01_1994 PF01842 ACT domain BG01_1995 PF03313 Serine dehydratase alpha chain BG01_1997 PF01022 Bacterial regulatory protein, arsR family BG01_1999 PF16859 Tetracyclin repressor-like, C-terminal domain BG01_1999 PF00440 Bacterial regulatory proteins, tetR family BG01_2 PF03458 UPF0126 domain BG01_20 PF00072 Response regulator receiver domain BG01_20 PF04397 LytTr DNA-binding domain BG01_200 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BG01_200 PF00467 KOW motif BG01_2000 PF07690 Major Facilitator Superfamily BG01_2001 PF02661 Fic/DOC family BG01_2002 PF01609 Transposase DDE domain BG01_2003 PF08453 Peptidase family M9 N-terminal BG01_2003 PF01752 Collagenase BG01_2003 PF18496 Collagenase G catalytic helper subdomain BG01_2004 PF01554 MatE BG01_2008 PF00672 HAMP domain BG01_2008 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG01_2008 PF02743 Cache domain BG01_201 PF00673 ribosomal L5P family C-terminus BG01_201 PF00281 Ribosomal protein L5 BG01_2011 PF00817 impB/mucB/samB family BG01_2011 PF11799 impB/mucB/samB family C-terminal domain BG01_2011 PF11798 IMS family HHH motif BG01_2015 PF18801 response regulator aspartate phosphatase H, N terminal BG01_2016 PF00356 Bacterial regulatory proteins, lacI family BG01_2017 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BG01_2018 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BG01_2019 PF05116 Sucrose-6F-phosphate phosphohydrolase BG01_202 PF00253 Ribosomal protein S14p/S29e BG01_2020 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BG01_2020 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BG01_2021 PF07690 Major Facilitator Superfamily BG01_2025 PF02016 LD-carboxypeptidase N-terminal domain BG01_2025 PF17676 LD-carboxypeptidase C-terminal domain BG01_2027 PF03466 LysR substrate binding domain BG01_2027 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG01_2028 PF02754 Cysteine-rich domain BG01_2029 PF11870 Domain of unknown function (DUF3390) BG01_2029 PF13183 4Fe-4S dicluster domain BG01_2029 PF02589 LUD domain BG01_203 PF00410 Ribosomal protein S8 BG01_2030 PF02589 LUD domain BG01_2031 PF07690 Major Facilitator Superfamily BG01_2032 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BG01_2032 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BG01_2033 PF04299 Putative FMN-binding domain BG01_2034 PF00583 Acetyltransferase (GNAT) family BG01_2035 PF01047 MarR family BG01_2037 PF00072 Response regulator receiver domain BG01_2037 PF00486 Transcriptional regulatory protein, C terminal BG01_2038 PF00512 His Kinase A (phospho-acceptor) domain BG01_2038 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_2038 PF00672 HAMP domain BG01_204 PF00347 Ribosomal protein L6 BG01_2041 PF02687 FtsX-like permease family BG01_2042 PF00005 ABC transporter BG01_2045 PF04072 Leucine carboxyl methyltransferase BG01_2046 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BG01_2046 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BG01_2048 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family BG01_2049 PF00753 Metallo-beta-lactamase superfamily BG01_205 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BG01_2052 PF01381 Helix-turn-helix BG01_2054 PF00144 Beta-lactamase BG01_2058 PF00291 Pyridoxal-phosphate dependent enzyme BG01_206 PF00333 Ribosomal protein S5, N-terminal domain BG01_206 PF03719 Ribosomal protein S5, C-terminal domain BG01_2063 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_2063 PF00512 His Kinase A (phospho-acceptor) domain BG01_2063 PF00672 HAMP domain BG01_2064 PF00486 Transcriptional regulatory protein, C terminal BG01_2064 PF00072 Response regulator receiver domain BG01_2069 PF07690 Major Facilitator Superfamily BG01_207 PF00327 Ribosomal protein L30p/L7e BG01_2070 PF00258 Flavodoxin BG01_2070 PF00667 FAD binding domain BG01_2070 PF00175 Oxidoreductase NAD-binding domain BG01_2070 PF00067 Cytochrome P450 BG01_2071 PF12802 MarR family BG01_2074 PF00144 Beta-lactamase BG01_2079 PF01609 Transposase DDE domain BG01_208 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BG01_2081 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG01_2084 PF01037 Lrp/AsnC ligand binding domain BG01_2087 PF00012 Hsp70 protein BG01_209 PF00344 SecY translocase BG01_2091 PF01022 Bacterial regulatory protein, arsR family BG01_2092 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG01_2093 PF01758 Sodium Bile acid symporter family BG01_2094 PF01451 Low molecular weight phosphotyrosine protein phosphatase BG01_2099 PF00005 ABC transporter BG01_21 PF13492 GAF domain BG01_21 PF07694 5TMR of 5TMR-LYT BG01_21 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_21 PF06580 Histidine kinase BG01_210 PF05191 Adenylate kinase, active site lid BG01_2100 PF00950 ABC 3 transport family BG01_2101 PF01297 Zinc-uptake complex component A periplasmic BG01_2102 PF00561 alpha/beta hydrolase fold BG01_2103 PF01040 UbiA prenyltransferase family BG01_2105 PF10057 Uncharacterized conserved protein (DUF2294) BG01_2106 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BG01_2106 PF00361 Proton-conducting membrane transporter BG01_2107 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) BG01_2109 PF00875 DNA photolyase BG01_2109 PF03441 FAD binding domain of DNA photolyase BG01_211 PF00557 Metallopeptidase family M24 BG01_2110 PF03073 TspO/MBR family BG01_2113 PF11181 Heat induced stress protein YflT BG01_2116 PF01544 CorA-like Mg2+ transporter protein BG01_2117 PF01544 CorA-like Mg2+ transporter protein BG01_2118 PF01047 MarR family BG01_2119 PF03466 LysR substrate binding domain BG01_2119 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG01_212 PF01176 Translation initiation factor 1A / IF-1 BG01_2121 PF01979 Amidohydrolase family BG01_2124 PF00857 Isochorismatase family BG01_2125 PF00561 alpha/beta hydrolase fold BG01_2126 PF00199 Catalase BG01_2126 PF06628 Catalase-related immune-responsive BG01_2127 PF17936 Bacterial Ig domain BG01_2127 PF02872 5'-nucleotidase, C-terminal domain BG01_2127 PF00149 Calcineurin-like phosphoesterase BG01_213 PF00444 Ribosomal protein L36 BG01_2133 PF01235 Sodium:alanine symporter family BG01_2135 PF04960 Glutaminase BG01_2136 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_2137 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_2138 PF08664 YcbB domain BG01_2138 PF00072 Response regulator receiver domain BG01_2139 PF03323 Bacillus/Clostridium GerA spore germination protein BG01_214 PF00416 Ribosomal protein S13/S18 BG01_2140 PF03845 Spore germination protein BG01_2141 PF05504 Spore germination B3/ GerAC like, C-terminal BG01_2142 PF05504 Spore germination B3/ GerAC like, C-terminal BG01_2145 PF03949 Malic enzyme, NAD binding domain BG01_2145 PF00390 Malic enzyme, N-terminal domain BG01_2146 PF13564 DoxX-like family BG01_2147 PF03807 NADP oxidoreductase coenzyme F420-dependent BG01_2147 PF14748 Pyrroline-5-carboxylate reductase dimerisation BG01_2148 PF05525 Branched-chain amino acid transport protein BG01_2149 PF13520 Amino acid permease BG01_215 PF00411 Ribosomal protein S11 BG01_2150 PF12826 Helix-hairpin-helix motif BG01_2150 PF01541 GIY-YIG catalytic domain BG01_2150 PF02151 UvrB/uvrC motif BG01_2150 PF08459 UvrC Helix-hairpin-helix N-terminal BG01_2152 PF01381 Helix-turn-helix BG01_2153 PF17763 Glutaminase/Asparaginase C-terminal domain BG01_2153 PF00710 Asparaginase, N-terminal BG01_2154 PF10415 Fumarase C C-terminus BG01_2154 PF00206 Lyase BG01_2157 PF00107 Zinc-binding dehydrogenase BG01_2157 PF13823 Alcohol dehydrogenase GroES-associated BG01_2157 PF08240 Alcohol dehydrogenase GroES-like domain BG01_2158 PF00269 Small, acid-soluble spore proteins, alpha/beta type BG01_2159 PF11553 Protein of unknown function (DUF3231) BG01_216 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BG01_216 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BG01_216 PF01000 RNA polymerase Rpb3/RpoA insert domain BG01_2160 PF10710 Protein of unknown function (DUF2512) BG01_2161 PF00269 Small, acid-soluble spore proteins, alpha/beta type BG01_2163 PF00324 Amino acid permease BG01_2166 PF01810 LysE type translocator BG01_2167 PF08892 YqcI/YcgG family BG01_2169 PF07875 Coat F domain BG01_217 PF01196 Ribosomal protein L17 BG01_2172 PF00753 Metallo-beta-lactamase superfamily BG01_2173 PF00391 PEP-utilising enzyme, mobile domain BG01_2173 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BG01_2174 PF00440 Bacterial regulatory proteins, tetR family BG01_2176 PF02915 Rubrerythrin BG01_218 PF00005 ABC transporter BG01_2183 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BG01_2183 PF02770 Acyl-CoA dehydrogenase, middle domain BG01_2183 PF08028 Acyl-CoA dehydrogenase, C-terminal domain BG01_2186 PF07454 Stage II sporulation protein P (SpoIIP) BG01_2187 PF03932 CutC family BG01_2188 PF10502 Signal peptidase, peptidase S26 BG01_2189 PF09339 IclR helix-turn-helix domain BG01_2189 PF01614 Bacterial transcriptional regulator BG01_219 PF00005 ABC transporter BG01_2190 PF02682 Carboxyltransferase domain, subdomain C and D BG01_2191 PF02626 Carboxyltransferase domain, subdomain A and B BG01_2192 PF03746 LamB/YcsF family BG01_2196 PF01470 Pyroglutamyl peptidase BG01_2197 PF02146 Sir2 family BG01_22 PF07690 Major Facilitator Superfamily BG01_220 PF02361 Cobalt transport protein BG01_2200 PF10502 Signal peptidase, peptidase S26 BG01_2202 PF00293 NUDIX domain BG01_2206 PF10898 Protein of unknown function (DUF2716) BG01_2207 PF08713 DNA alkylation repair enzyme BG01_2209 PF00324 Amino acid permease BG01_221 PF01416 tRNA pseudouridine synthase BG01_2210 PF13302 Acetyltransferase (GNAT) domain BG01_2211 PF01925 Sulfite exporter TauE/SafE BG01_2217 PF00561 alpha/beta hydrolase fold BG01_2218 PF00486 Transcriptional regulatory protein, C terminal BG01_2218 PF00072 Response regulator receiver domain BG01_2219 PF00672 HAMP domain BG01_2219 PF00512 His Kinase A (phospho-acceptor) domain BG01_222 PF00572 Ribosomal protein L13 BG01_2221 PF13031 Protein of unknown function (DUF3892) BG01_2222 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 BG01_2223 PF00392 Bacterial regulatory proteins, gntR family BG01_2223 PF00155 Aminotransferase class I and II BG01_2224 PF00892 EamA-like transporter family BG01_2227 PF00583 Acetyltransferase (GNAT) family BG01_2228 PF12833 Helix-turn-helix domain BG01_223 PF00380 Ribosomal protein S9/S16 BG01_2233 PF00005 ABC transporter BG01_2233 PF02687 FtsX-like permease family BG01_2233 PF12704 MacB-like periplasmic core domain BG01_2235 PF00392 Bacterial regulatory proteins, gntR family BG01_2236 PF00005 ABC transporter BG01_2239 PF00293 NUDIX domain BG01_2241 PF00679 Elongation factor G C-terminus BG01_2241 PF14492 Elongation Factor G, domain II BG01_2241 PF03764 Elongation factor G, domain IV BG01_2241 PF00009 Elongation factor Tu GTP binding domain BG01_2242 PF01047 MarR family BG01_2243 PF00881 Nitroreductase family BG01_2245 PF17863 AAA lid domain BG01_2245 PF07726 ATPase family associated with various cellular activities (AAA) BG01_225 PF01520 N-acetylmuramoyl-L-alanine amidase BG01_2250 PF00144 Beta-lactamase BG01_2251 PF13382 Adenine deaminase C-terminal domain BG01_2251 PF01979 Amidohydrolase family BG01_2253 PF06628 Catalase-related immune-responsive BG01_2253 PF00199 Catalase BG01_2254 PF00202 Aminotransferase class-III BG01_2256 PF00535 Glycosyl transferase family 2 BG01_2258 PF00535 Glycosyl transferase family 2 BG01_226 PF10609 NUBPL iron-transfer P-loop NTPase BG01_2261 PF00535 Glycosyl transferase family 2 BG01_2263 PF07690 Major Facilitator Superfamily BG01_2266 PF17863 AAA lid domain BG01_2266 PF07726 ATPase family associated with various cellular activities (AAA) BG01_227 PF17898 Spore germination GerD central core domain BG01_2270 PF12681 Glyoxalase-like domain BG01_2271 PF13302 Acetyltransferase (GNAT) domain BG01_2273 PF00072 Response regulator receiver domain BG01_2273 PF04397 LytTr DNA-binding domain BG01_2275 PF10086 YhfC intramembrane metalloprotease BG01_2278 PF13443 Cro/C1-type HTH DNA-binding domain BG01_2279 PF11188 Protein of unknown function (DUF2975) BG01_228 PF14089 KinB-signalling pathway activation in sporulation BG01_2280 PF00245 Alkaline phosphatase BG01_2281 PF00487 Fatty acid desaturase BG01_2282 PF01139 tRNA-splicing ligase RtcB BG01_2283 PF00324 Amino acid permease BG01_2284 PF01614 Bacterial transcriptional regulator BG01_2284 PF09339 IclR helix-turn-helix domain BG01_2285 PF01546 Peptidase family M20/M25/M40 BG01_2286 PF14748 Pyrroline-5-carboxylate reductase dimerisation BG01_2286 PF03807 NADP oxidoreductase coenzyme F420-dependent BG01_2287 PF01472 PUA domain BG01_2287 PF00696 Amino acid kinase family BG01_2288 PF00171 Aldehyde dehydrogenase family BG01_2289 PF07662 Na+ dependent nucleoside transporter C-terminus BG01_2289 PF01773 Na+ dependent nucleoside transporter N-terminus BG01_229 PF01522 Polysaccharide deacetylase BG01_2293 PF03992 Antibiotic biosynthesis monooxygenase BG01_2297 PF01791 DeoC/LacD family aldolase BG01_2299 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BG01_2299 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BG01_23 PF02028 BCCT, betaine/carnitine/choline family transporter BG01_2300 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BG01_2300 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BG01_2301 PF00325 Bacterial regulatory proteins, crp family BG01_2301 PF04198 Putative sugar-binding domain BG01_2302 PF00005 ABC transporter BG01_2303 PF02653 Branched-chain amino acid transport system / permease component BG01_2304 PF02653 Branched-chain amino acid transport system / permease component BG01_2305 PF13407 Periplasmic binding protein domain BG01_2306 PF06039 Malate:quinone oxidoreductase (Mqo) BG01_2311 PF04542 Sigma-70 region 2 BG01_2311 PF08281 Sigma-70, region 4 BG01_2313 PF06725 3D domain BG01_2313 PF01476 LysM domain BG01_2316 PF01636 Phosphotransferase enzyme family BG01_2321 PF01817 Chorismate mutase type II BG01_2321 PF00793 DAHP synthetase I family BG01_2322 PF01264 Chorismate synthase BG01_2323 PF00155 Aminotransferase class I and II BG01_2324 PF01842 ACT domain BG01_2324 PF02153 Prephenate dehydrogenase BG01_2325 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BG01_2327 PF16295 Tetracyclin repressor-like, C-terminal domain BG01_2327 PF00440 Bacterial regulatory proteins, tetR family BG01_2328 PF03176 MMPL family BG01_2329 PF03176 MMPL family BG01_2331 PF12848 ABC transporter BG01_2331 PF00005 ABC transporter BG01_2332 PF00884 Sulfatase BG01_2333 PF03741 Integral membrane protein TerC family BG01_2335 PF01522 Polysaccharide deacetylase BG01_2337 PF08713 DNA alkylation repair enzyme BG01_2341 PF12867 DinB superfamily BG01_2342 PF13536 Putative multidrug resistance efflux transporter BG01_2347 PF02522 Aminoglycoside 3-N-acetyltransferase BG01_2356 PF00005 ABC transporter BG01_2357 PF09084 NMT1/THI5 like BG01_2358 PF00528 Binding-protein-dependent transport system inner membrane component BG01_2359 PF00296 Luciferase-like monooxygenase BG01_2361 PF01594 AI-2E family transporter BG01_2370 PF00005 ABC transporter BG01_2375 PF03630 Fumble BG01_2376 PF07977 FabA-like domain BG01_2377 PF00155 Aminotransferase class I and II BG01_238 PF05697 Bacterial trigger factor protein (TF) BG01_238 PF05698 Bacterial trigger factor protein (TF) C-terminus BG01_2383 PF08241 Methyltransferase domain BG01_2385 PF01156 Inosine-uridine preferring nucleoside hydrolase BG01_2386 PF04226 Transglycosylase associated protein BG01_2390 PF07690 Major Facilitator Superfamily BG01_2391 PF12793 Sugar transport-related sRNA regulator N-term BG01_2391 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG01_2392 PF13171 Protein of unknown function (DUF4004) BG01_2393 PF04519 Polymer-forming cytoskeletal BG01_2395 PF07690 Major Facilitator Superfamily BG01_2399 PF02645 Uncharacterised protein, DegV family COG1307 BG01_24 PF02898 Nitric oxide synthase, oxygenase domain BG01_2402 PF01432 Peptidase family M3 BG01_2402 PF08439 Oligopeptidase F BG01_2403 PF03808 Glycosyl transferase WecB/TagA/CpsF family BG01_2405 PF01048 Phosphorylase superfamily BG01_2409 PF00486 Transcriptional regulatory protein, C terminal BG01_2409 PF00072 Response regulator receiver domain BG01_2410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_2410 PF00512 His Kinase A (phospho-acceptor) domain BG01_2410 PF00989 PAS fold BG01_2410 PF16736 Single Cache-like BG01_2411 PF02129 X-Pro dipeptidyl-peptidase (S15 family) BG01_2411 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BG01_2416 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BG01_2419 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BG01_2419 PF13378 Enolase C-terminal domain-like BG01_2420 PF00877 NlpC/P60 family BG01_2420 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain BG01_2421 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG01_2422 PF13302 Acetyltransferase (GNAT) domain BG01_2422 PF03352 Methyladenine glycosylase BG01_2422 PF13673 Acetyltransferase (GNAT) domain BG01_2422 PF00117 Glutamine amidotransferase class-I BG01_2422 PF00958 GMP synthase C terminal domain BG01_2423 PF04914 DltD protein BG01_2426 PF09335 SNARE associated Golgi protein BG01_2427 PF08876 Domain of unknown function (DUF1836) BG01_2430 PF04324 BFD-like [2Fe-2S] binding domain BG01_2430 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG01_2432 PF02954 Bacterial regulatory protein, Fis family BG01_2432 PF13188 PAS domain BG01_2432 PF00158 Sigma-54 interaction domain BG01_2433 PF01266 FAD dependent oxidoreductase BG01_2434 PF05544 Proline racemase BG01_2435 PF05544 Proline racemase BG01_2436 PF00701 Dihydrodipicolinate synthetase family BG01_2437 PF00171 Aldehyde dehydrogenase family BG01_2438 PF01235 Sodium:alanine symporter family BG01_2439 PF02627 Carboxymuconolactone decarboxylase family BG01_2441 PF18416 N-acetylglucosamine binding protein domain 2 BG01_2441 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading BG01_2442 PF01368 DHH family BG01_2442 PF02833 DHHA2 domain BG01_2449 PF09382 RQC domain BG01_2449 PF00270 DEAD/DEAH box helicase BG01_2449 PF00570 HRDC domain BG01_2449 PF00271 Helicase conserved C-terminal domain BG01_2449 PF16124 RecQ zinc-binding BG01_2450 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like BG01_2453 PF13538 UvrD-like helicase C-terminal domain BG01_2464 PF03772 Competence protein BG01_2464 PF13567 Domain of unknown function (DUF4131) BG01_2464 PF00753 Metallo-beta-lactamase superfamily BG01_2469 PF10990 Protein of unknown function (DUF2809) BG01_2473 PF18416 N-acetylglucosamine binding protein domain 2 BG01_2473 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading BG01_2474 PF13673 Acetyltransferase (GNAT) domain BG01_2475 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BG01_2478 PF00574 Clp protease BG01_2479 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BG01_2480 PF00571 CBS domain BG01_2480 PF00005 ABC transporter BG01_2481 PF00528 Binding-protein-dependent transport system inner membrane component BG01_2487 PF13673 Acetyltransferase (GNAT) domain BG01_2487 PF04229 GrpB protein BG01_2488 PF00106 short chain dehydrogenase BG01_2490 PF00676 Dehydrogenase E1 component BG01_2491 PF02779 Transketolase, pyrimidine binding domain BG01_2491 PF02780 Transketolase, C-terminal domain BG01_2492 PF02817 e3 binding domain BG01_2492 PF00364 Biotin-requiring enzyme BG01_2492 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BG01_2493 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BG01_2493 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG01_2497 PF02082 Transcriptional regulator BG01_25 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BG01_25 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BG01_2501 PF00455 DeoR C terminal sensor domain BG01_2501 PF08220 DeoR-like helix-turn-helix domain BG01_2502 PF13302 Acetyltransferase (GNAT) domain BG01_2505 PF00158 Sigma-54 interaction domain BG01_2505 PF01590 GAF domain BG01_2505 PF02954 Bacterial regulatory protein, Fis family BG01_2511 PF13344 Haloacid dehalogenase-like hydrolase BG01_2511 PF00293 NUDIX domain BG01_2512 PF08359 YsiA-like protein, C-terminal region BG01_2512 PF00440 Bacterial regulatory proteins, tetR family BG01_2513 PF00266 Aminotransferase class-V BG01_2514 PF04199 Putative cyclase BG01_2515 PF03301 Tryptophan 2,3-dioxygenase BG01_2518 PF01471 Putative peptidoglycan binding domain BG01_2518 PF07486 Cell Wall Hydrolase BG01_2519 PF14620 YpeB sporulation BG01_2519 PF03413 Peptidase propeptide and YPEB domain BG01_2520 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) BG01_2523 PF06081 Aromatic acid exporter family member 1 BG01_2528 PF00561 alpha/beta hydrolase fold BG01_2529 PF00392 Bacterial regulatory proteins, gntR family BG01_2529 PF00155 Aminotransferase class I and II BG01_2530 PF00892 EamA-like transporter family BG01_2531 PF00308 Bacterial dnaA protein BG01_2531 PF11638 DnaA N-terminal domain BG01_2531 PF08299 Bacterial dnaA protein helix-turn-helix BG01_2532 PF00344 SecY translocase BG01_2536 PF02868 Thermolysin metallopeptidase, alpha-helical domain BG01_2536 PF07504 Fungalysin/Thermolysin Propeptide Motif BG01_2536 PF01447 Thermolysin metallopeptidase, catalytic domain BG01_2536 PF03413 Peptidase propeptide and YPEB domain BG01_2540 PF00668 Condensation domain BG01_2540 PF13193 AMP-binding enzyme C-terminal domain BG01_2540 PF00550 Phosphopantetheine attachment site BG01_2540 PF00501 AMP-binding enzyme BG01_2541 PF00282 Pyridoxal-dependent decarboxylase conserved domain BG01_2543 PF07859 alpha/beta hydrolase fold BG01_2546 PF13419 Haloacid dehalogenase-like hydrolase BG01_2551 PF01266 FAD dependent oxidoreductase BG01_2559 PF01541 GIY-YIG catalytic domain BG01_2561 PF02673 Bacitracin resistance protein BacA BG01_2564 PF12867 DinB superfamily BG01_2566 PF08000 Bacterial PH domain BG01_2567 PF01734 Patatin-like phospholipase BG01_257 PF00056 lactate/malate dehydrogenase, NAD binding domain BG01_257 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BG01_2573 PF09234 Domain of unknown function (DUF1963) BG01_2577 PF12706 Beta-lactamase superfamily domain BG01_258 PF00128 Alpha amylase, catalytic domain BG01_258 PF02806 Alpha amylase, C-terminal all-beta domain BG01_258 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BG01_2580 PF00293 NUDIX domain BG01_2581 PF02767 DNA polymerase III beta subunit, central domain BG01_2581 PF02768 DNA polymerase III beta subunit, C-terminal domain BG01_2581 PF00712 DNA polymerase III beta subunit, N-terminal domain BG01_2582 PF00293 NUDIX domain BG01_2582 PF09297 NADH pyrophosphatase zinc ribbon domain BG01_2584 PF07690 Major Facilitator Superfamily BG01_2588 PF00293 NUDIX domain BG01_259 PF00483 Nucleotidyl transferase BG01_2590 PF01270 Glycosyl hydrolases family 8 BG01_2591 PF00892 EamA-like transporter family BG01_2592 PF00155 Aminotransferase class I and II BG01_2592 PF00392 Bacterial regulatory proteins, gntR family BG01_2593 PF00155 Aminotransferase class I and II BG01_2593 PF00392 Bacterial regulatory proteins, gntR family BG01_2596 PF03009 Glycerophosphoryl diester phosphodiesterase family BG01_260 PF00483 Nucleotidyl transferase BG01_2600 PF07690 Major Facilitator Superfamily BG01_2602 PF00144 Beta-lactamase BG01_2605 PF01965 DJ-1/PfpI family BG01_261 PF08323 Starch synthase catalytic domain BG01_261 PF00534 Glycosyl transferases group 1 BG01_2611 PF00144 Beta-lactamase BG01_2611 PF11954 Domain of unknown function (DUF3471) BG01_2614 PF08240 Alcohol dehydrogenase GroES-like domain BG01_2614 PF00107 Zinc-binding dehydrogenase BG01_2617 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_2617 PF00512 His Kinase A (phospho-acceptor) domain BG01_262 PF00343 Carbohydrate phosphorylase BG01_2620 PF12558 ATP-binding cassette cobalt transporter BG01_2620 PF00005 ABC transporter BG01_2621 PF07155 ECF-type riboflavin transporter, S component BG01_2622 PF01177 Asp/Glu/Hydantoin racemase BG01_2623 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase BG01_2625 PF13426 PAS domain BG01_2625 PF00989 PAS fold BG01_2625 PF00512 His Kinase A (phospho-acceptor) domain BG01_2625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_2625 PF13188 PAS domain BG01_2629 PF00067 Cytochrome P450 BG01_2631 PF07561 Domain of Unknown Function (DUF1540) BG01_2632 PF00132 Bacterial transferase hexapeptide (six repeats) BG01_2634 PF00067 Cytochrome P450 BG01_2650 PF03070 TENA/THI-4/PQQC family BG01_2651 PF07478 D-ala D-ala ligase C-terminus BG01_2651 PF01820 D-ala D-ala ligase N-terminus BG01_2652 PF00392 Bacterial regulatory proteins, gntR family BG01_2652 PF00155 Aminotransferase class I and II BG01_2653 PF00742 Homoserine dehydrogenase BG01_2653 PF01842 ACT domain BG01_2653 PF03447 Homoserine dehydrogenase, NAD binding domain BG01_2657 PF02687 FtsX-like permease family BG01_2658 PF02687 FtsX-like permease family BG01_2659 PF00005 ABC transporter BG01_266 PF00313 'Cold-shock' DNA-binding domain BG01_2665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_2667 PF00072 Response regulator receiver domain BG01_2667 PF00486 Transcriptional regulatory protein, C terminal BG01_2669 PF07486 Cell Wall Hydrolase BG01_267 PF01258 Prokaryotic dksA/traR C4-type zinc finger BG01_2672 PF08245 Mur ligase middle domain BG01_2672 PF02875 Mur ligase family, glutamate ligase domain BG01_2672 PF01225 Mur ligase family, catalytic domain BG01_2673 PF08245 Mur ligase middle domain BG01_2673 PF02875 Mur ligase family, glutamate ligase domain BG01_2673 PF01225 Mur ligase family, catalytic domain BG01_2676 PF08240 Alcohol dehydrogenase GroES-like domain BG01_2676 PF00107 Zinc-binding dehydrogenase BG01_2678 PF00155 Aminotransferase class I and II BG01_2678 PF00392 Bacterial regulatory proteins, gntR family BG01_268 PF01040 UbiA prenyltransferase family BG01_2683 PF01636 Phosphotransferase enzyme family BG01_2687 PF07690 Major Facilitator Superfamily BG01_2688 PF00376 MerR family regulatory protein BG01_2688 PF09278 MerR, DNA binding BG01_269 PF00425 chorismate binding enzyme BG01_2693 PF17760 UvrA interaction domain BG01_2693 PF17755 UvrA DNA-binding domain BG01_2693 PF17760 UvrA interaction domain BG01_2693 PF17755 UvrA DNA-binding domain BG01_2697 PF07504 Fungalysin/Thermolysin Propeptide Motif BG01_2697 PF01447 Thermolysin metallopeptidase, catalytic domain BG01_2697 PF03413 Peptidase propeptide and YPEB domain BG01_2697 PF02868 Thermolysin metallopeptidase, alpha-helical domain BG01_2698 PF02868 Thermolysin metallopeptidase, alpha-helical domain BG01_2698 PF07504 Fungalysin/Thermolysin Propeptide Motif BG01_2698 PF03413 Peptidase propeptide and YPEB domain BG01_2698 PF01447 Thermolysin metallopeptidase, catalytic domain BG01_27 PF02293 AmiS/UreI family transporter BG01_270 PF16582 Middle domain of thiamine pyrophosphate BG01_270 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BG01_270 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BG01_2702 PF01048 Phosphorylase superfamily BG01_2703 PF13021 Domain of unknown function (DUF3885) BG01_2704 PF01966 HD domain BG01_2705 PF00486 Transcriptional regulatory protein, C terminal BG01_2705 PF00072 Response regulator receiver domain BG01_2706 PF00512 His Kinase A (phospho-acceptor) domain BG01_2706 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_2707 PF00768 D-alanyl-D-alanine carboxypeptidase BG01_2707 PF07943 Penicillin-binding protein 5, C-terminal domain BG01_2708 PF05163 DinB family BG01_271 PF00561 alpha/beta hydrolase fold BG01_2710 PF00485 Phosphoribulokinase / Uridine kinase family BG01_2711 PF00583 Acetyltransferase (GNAT) family BG01_2713 PF13193 AMP-binding enzyme C-terminal domain BG01_2713 PF16177 Acetyl-coenzyme A synthetase N-terminus BG01_2713 PF00501 AMP-binding enzyme BG01_2714 PF01039 Carboxyl transferase domain BG01_2715 PF00378 Enoyl-CoA hydratase/isomerase BG01_2716 PF00682 HMGL-like BG01_2717 PF00364 Biotin-requiring enzyme BG01_2718 PF00289 Biotin carboxylase, N-terminal domain BG01_2718 PF02785 Biotin carboxylase C-terminal domain BG01_2718 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BG01_2719 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BG01_2719 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BG01_2719 PF02770 Acyl-CoA dehydrogenase, middle domain BG01_272 PF00378 Enoyl-CoA hydratase/isomerase BG01_2722 PF08359 YsiA-like protein, C-terminal region BG01_2722 PF00440 Bacterial regulatory proteins, tetR family BG01_2724 PF00005 ABC transporter BG01_2727 PF00581 Rhodanese-like domain BG01_2728 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG01_273 PF13193 AMP-binding enzyme C-terminal domain BG01_273 PF00501 AMP-binding enzyme BG01_2730 PF13302 Acetyltransferase (GNAT) domain BG01_2731 PF03707 Bacterial signalling protein N terminal repeat BG01_2731 PF00990 Diguanylate cyclase, GGDEF domain BG01_2731 PF00563 EAL domain BG01_2734 PF00440 Bacterial regulatory proteins, tetR family BG01_2737 PF00395 S-layer homology domain BG01_2737 PF01520 N-acetylmuramoyl-L-alanine amidase BG01_2739 PF02557 D-alanyl-D-alanine carboxypeptidase BG01_274 PF13378 Enolase C-terminal domain-like BG01_274 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BG01_2742 PF01381 Helix-turn-helix BG01_2743 PF18801 response regulator aspartate phosphatase H, N terminal BG01_2747 PF02872 5'-nucleotidase, C-terminal domain BG01_2747 PF00149 Calcineurin-like phosphoesterase BG01_275 PF00486 Transcriptional regulatory protein, C terminal BG01_275 PF00072 Response regulator receiver domain BG01_2751 PF04962 KduI/IolB family BG01_2752 PF01116 Fructose-bisphosphate aldolase class-II BG01_2753 PF01261 Xylose isomerase-like TIM barrel BG01_2754 PF01261 Xylose isomerase-like TIM barrel BG01_2755 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BG01_2755 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BG01_2755 PF00205 Thiamine pyrophosphate enzyme, central domain BG01_2756 PF00171 Aldehyde dehydrogenase family BG01_2757 PF00294 pfkB family carbohydrate kinase BG01_2758 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BG01_2758 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BG01_2759 PF07690 Major Facilitator Superfamily BG01_276 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_276 PF00512 His Kinase A (phospho-acceptor) domain BG01_2760 PF00356 Bacterial regulatory proteins, lacI family BG01_2761 PF01569 PAP2 superfamily BG01_2765 PF00905 Penicillin binding protein transpeptidase domain BG01_2765 PF03717 Penicillin-binding Protein dimerisation domain BG01_2767 PF04542 Sigma-70 region 2 BG01_2767 PF08281 Sigma-70, region 4 BG01_277 PF02557 D-alanyl-D-alanine carboxypeptidase BG01_2771 PF01546 Peptidase family M20/M25/M40 BG01_2771 PF07687 Peptidase dimerisation domain BG01_2777 PF14171 Toxin SpoIISA, type II toxin-antitoxin system BG01_2778 PF00300 Histidine phosphatase superfamily (branch 1) BG01_2779 PF12802 MarR family BG01_2780 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BG01_2780 PF00205 Thiamine pyrophosphate enzyme, central domain BG01_2780 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BG01_2781 PF08241 Methyltransferase domain BG01_2783 PF03848 Tellurite resistance protein TehB BG01_2783 PF09313 Domain of unknown function (DUF1971) BG01_2784 PF00005 ABC transporter BG01_2784 PF02687 FtsX-like permease family BG01_2784 PF12704 MacB-like periplasmic core domain BG01_2788 PF17932 Tetracyclin repressor-like, C-terminal domain BG01_2788 PF00440 Bacterial regulatory proteins, tetR family BG01_2790 PF00270 DEAD/DEAH box helicase BG01_2790 PF00271 Helicase conserved C-terminal domain BG01_2793 PF00753 Metallo-beta-lactamase superfamily BG01_2793 PF16123 Hydroxyacylglutathione hydrolase C-terminus BG01_2795 PF00291 Pyridoxal-phosphate dependent enzyme BG01_2796 PF00266 Aminotransferase class-V BG01_2797 PF02660 Glycerol-3-phosphate acyltransferase BG01_2798 PF01869 BadF/BadG/BcrA/BcrD ATPase family BG01_2799 PF03702 Anhydro-N-acetylmuramic acid kinase BG01_280 PF01979 Amidohydrolase family BG01_2801 PF02378 Phosphotransferase system, EIIC BG01_2803 PF02638 Glycosyl hydrolase-like 10 BG01_2808 PF04542 Sigma-70 region 2 BG01_2808 PF12680 SnoaL-like domain BG01_2808 PF08281 Sigma-70, region 4 BG01_281 PF03841 L-seryl-tRNA selenium transferase BG01_2814 PF01381 Helix-turn-helix BG01_2814 PF07883 Cupin domain BG01_2815 PF01810 LysE type translocator BG01_2818 PF00005 ABC transporter BG01_2818 PF00664 ABC transporter transmembrane region BG01_2819 PF00664 ABC transporter transmembrane region BG01_2819 PF00005 ABC transporter BG01_282 PF07071 KDGP aldolase BG01_2822 PF03473 MOSC domain BG01_2822 PF03475 3-alpha domain BG01_2823 PF03466 LysR substrate binding domain BG01_2823 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG01_2826 PF01118 Semialdehyde dehydrogenase, NAD binding domain BG01_2826 PF02774 Semialdehyde dehydrogenase, dimerisation domain BG01_2827 PF03466 LysR substrate binding domain BG01_2827 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG01_2839 PF00313 'Cold-shock' DNA-binding domain BG01_2841 PF13302 Acetyltransferase (GNAT) domain BG01_2849 PF00583 Acetyltransferase (GNAT) family BG01_285 PF02447 GntP family permease BG01_2852 PF00302 Chloramphenicol acetyltransferase BG01_2854 PF03176 MMPL family BG01_2856 PF00753 Metallo-beta-lactamase superfamily BG01_2856 PF16123 Hydroxyacylglutathione hydrolase C-terminus BG01_2865 PF13649 Methyltransferase domain BG01_287 PF02687 FtsX-like permease family BG01_2870 PF07690 Major Facilitator Superfamily BG01_2871 PF12146 Serine aminopeptidase, S33 BG01_2875 PF03129 Anticodon binding domain BG01_2875 PF02824 TGS domain BG01_2875 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BG01_2875 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BG01_2876 PF01479 S4 domain BG01_2876 PF00849 RNA pseudouridylate synthase BG01_2877 PF16291 Domain of unknown function (DUF4937 BG01_288 PF02687 FtsX-like permease family BG01_2880 PF01235 Sodium:alanine symporter family BG01_2881 PF00082 Subtilase family BG01_2882 PF05163 DinB family BG01_2884 PF00216 Bacterial DNA-binding protein BG01_2887 PF07690 Major Facilitator Superfamily BG01_2888 PF03621 MbtH-like protein BG01_2889 PF13193 AMP-binding enzyme C-terminal domain BG01_2889 PF00668 Condensation domain BG01_2889 PF00550 Phosphopantetheine attachment site BG01_2889 PF00975 Thioesterase domain BG01_2889 PF00501 AMP-binding enzyme BG01_289 PF00005 ABC transporter BG01_2890 PF00857 Isochorismatase family BG01_2890 PF00550 Phosphopantetheine attachment site BG01_2891 PF13193 AMP-binding enzyme C-terminal domain BG01_2891 PF00501 AMP-binding enzyme BG01_2892 PF00425 chorismate binding enzyme BG01_2893 PF00106 short chain dehydrogenase BG01_2894 PF07690 Major Facilitator Superfamily BG01_2896 PF01022 Bacterial regulatory protein, arsR family BG01_2898 PF13476 AAA domain BG01_2899 PF00149 Calcineurin-like phosphoesterase BG01_2899 PF12320 Type 5 capsule protein repressor C-terminal domain BG01_29 PF16363 GDP-mannose 4,6 dehydratase BG01_290 PF02687 FtsX-like permease family BG01_2900 PF10763 Protein of unknown function (DUF2584) BG01_2902 PF00378 Enoyl-CoA hydratase/isomerase BG01_2903 PF01810 LysE type translocator BG01_2904 PF00171 Aldehyde dehydrogenase family BG01_2905 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BG01_2905 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BG01_2906 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BG01_2906 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BG01_2906 PF02770 Acyl-CoA dehydrogenase, middle domain BG01_2908 PF03972 MmgE/PrpD family BG01_2909 PF00285 Citrate synthase, C-terminal domain BG01_291 PF02687 FtsX-like permease family BG01_2910 PF01521 Iron-sulphur cluster biosynthesis BG01_2911 PF07690 Major Facilitator Superfamily BG01_2917 PF10676 Spore germination protein gerPA/gerPF BG01_293 PF02687 FtsX-like permease family BG01_2937 PF04471 Restriction endonuclease BG01_2939 PF03424 Carbohydrate binding domain (family 17/28) BG01_2939 PF00395 S-layer homology domain BG01_2939 PF00150 Cellulase (glycosyl hydrolase family 5) BG01_294 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_2940 PF14436 Bacterial EndoU nuclease BG01_2940 PF04740 LXG domain of WXG superfamily BG01_2942 PF00085 Thioredoxin BG01_2943 PF01569 PAP2 superfamily BG01_2944 PF01545 Cation efflux family BG01_2944 PF16916 Dimerisation domain of Zinc Transporter BG01_2945 PF07070 SpoOM protein BG01_2948 PF14162 YozD-like protein BG01_295 PF00486 Transcriptional regulatory protein, C terminal BG01_295 PF00072 Response regulator receiver domain BG01_2951 PF06855 YozE SAM-like fold BG01_2952 PF14122 YokU-like protein, putative antitoxin BG01_2953 PF12544 Lysine-2,3-aminomutase BG01_2954 PF00158 Sigma-54 interaction domain BG01_2954 PF02954 Bacterial regulatory protein, Fis family BG01_2954 PF13426 PAS domain BG01_2955 PF00583 Acetyltransferase (GNAT) family BG01_2956 PF01546 Peptidase family M20/M25/M40 BG01_2956 PF07687 Peptidase dimerisation domain BG01_2957 PF01144 Coenzyme A transferase BG01_2958 PF01144 Coenzyme A transferase BG01_2959 PF00202 Aminotransferase class-III BG01_296 PF12833 Helix-turn-helix domain BG01_296 PF06445 GyrI-like small molecule binding domain BG01_2961 PF09385 Histidine kinase N terminal BG01_2962 PF07997 Protein of unknown function (DUF1694) BG01_2963 PF00171 Aldehyde dehydrogenase family BG01_2964 PF00571 CBS domain BG01_2964 PF03471 Transporter associated domain BG01_2964 PF01595 Cyclin M transmembrane N-terminal domain BG01_297 PF00005 ABC transporter BG01_2970 PF13520 Amino acid permease BG01_2971 PF00528 Binding-protein-dependent transport system inner membrane component BG01_2972 PF00005 ABC transporter BG01_2972 PF00571 CBS domain BG01_2975 PF03358 NADPH-dependent FMN reductase BG01_2978 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BG01_2978 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BG01_2979 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BG01_2979 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BG01_298 PF02687 FtsX-like permease family BG01_2983 PF00144 Beta-lactamase BG01_2986 PF08240 Alcohol dehydrogenase GroES-like domain BG01_2986 PF00107 Zinc-binding dehydrogenase BG01_2987 PF01418 Helix-turn-helix domain, rpiR family BG01_2987 PF01380 SIS domain BG01_2989 PF00196 Bacterial regulatory proteins, luxR family BG01_2989 PF00072 Response regulator receiver domain BG01_299 PF00398 Ribosomal RNA adenine dimethylase BG01_2990 PF13185 GAF domain BG01_2990 PF07730 Histidine kinase BG01_2991 PF00924 Mechanosensitive ion channel BG01_2992 PF00011 Hsp20/alpha crystallin family BG01_2993 PF00293 NUDIX domain BG01_2994 PF00857 Isochorismatase family BG01_2997 PF00881 Nitroreductase family BG01_2998 PF01063 Amino-transferase class IV BG01_2999 PF01497 Periplasmic binding protein BG01_3 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG01_30 PF03006 Haemolysin-III related BG01_300 PF09335 SNARE associated Golgi protein BG01_3003 PF00733 Asparagine synthase BG01_3003 PF13537 Glutamine amidotransferase domain BG01_3004 PF00011 Hsp20/alpha crystallin family BG01_3005 PF02630 SCO1/SenC BG01_3007 PF02645 Uncharacterised protein, DegV family COG1307 BG01_3009 PF00902 Sec-independent protein translocase protein (TatC) BG01_3010 PF02416 mttA/Hcf106 family BG01_3011 PF03006 Haemolysin-III related BG01_3012 PF01553 Acyltransferase BG01_3013 PF02525 Flavodoxin-like fold BG01_3014 PF00905 Penicillin binding protein transpeptidase domain BG01_3014 PF03717 Penicillin-binding Protein dimerisation domain BG01_3014 PF05223 NTF2-like N-terminal transpeptidase domain BG01_3015 PF00186 Dihydrofolate reductase BG01_3016 PF00303 Thymidylate synthase BG01_3017 PF00144 Beta-lactamase BG01_3017 PF07930 D-aminopeptidase, domain B BG01_3021 PF13419 Haloacid dehalogenase-like hydrolase BG01_3022 PF14005 YpjP-like protein BG01_3023 PF05975 Bacterial ABC transporter protein EcsB BG01_3024 PF00005 ABC transporter BG01_3028 PF00583 Acetyltransferase (GNAT) family BG01_3029 PF01980 tRNA-methyltransferase O BG01_303 PF00248 Aldo/keto reductase family BG01_3030 PF01177 Asp/Glu/Hydantoin racemase BG01_3031 PF00465 Iron-containing alcohol dehydrogenase BG01_3035 PF10997 Alternate to MurJ BG01_3038 PF00209 Sodium:neurotransmitter symporter family BG01_3041 PF00672 HAMP domain BG01_3041 PF00512 His Kinase A (phospho-acceptor) domain BG01_3041 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_3042 PF00486 Transcriptional regulatory protein, C terminal BG01_3042 PF00072 Response regulator receiver domain BG01_3043 PF00939 Sodium:sulfate symporter transmembrane region BG01_3044 PF02595 Glycerate kinase family BG01_3063 PF12538 DNA transporter BG01_3063 PF01580 FtsK/SpoIIIE family BG01_3067 PF01336 OB-fold nucleic acid binding domain BG01_3067 PF00152 tRNA synthetases class II (D, K and N) BG01_3068 PF01225 Mur ligase family, catalytic domain BG01_3068 PF08245 Mur ligase middle domain BG01_3068 PF02875 Mur ligase family, glutamate ligase domain BG01_307 PF00781 Diacylglycerol kinase catalytic domain BG01_3071 PF00133 tRNA synthetases class I (I, L, M and V) BG01_3071 PF08264 Anticodon-binding domain of tRNA BG01_3077 PF00750 tRNA synthetases class I (R) BG01_3077 PF03485 Arginyl tRNA synthetase N terminal domain BG01_3077 PF05746 DALR anticodon binding domain BG01_3078 PF04445 Putative SAM-dependent methyltransferase BG01_3079 PF06491 Disulphide isomerase BG01_308 PF00156 Phosphoribosyl transferase domain BG01_3081 PF08712 Scaffold protein Nfu/NifU N terminal BG01_3081 PF13769 Virulence factor BG01_3082 PF01494 FAD binding domain BG01_3083 PF01494 FAD binding domain BG01_3084 PF00440 Bacterial regulatory proteins, tetR family BG01_3085 PF00436 Single-strand binding protein family BG01_3088 PF00005 ABC transporter BG01_3088 PF16326 ABC transporter C-terminal domain BG01_3088 PF12848 ABC transporter BG01_3089 PF01966 HD domain BG01_3092 PF01510 N-acetylmuramoyl-L-alanine amidase BG01_3095 PF04232 Stage V sporulation protein S (SpoVS) BG01_3102 PF01814 Hemerythrin HHE cation binding domain BG01_3102 PF04405 Domain of Unknown function (DUF542) BG01_3103 PF18267 Rubredoxin NAD+ reductase C-terminal domain BG01_3103 PF04324 BFD-like [2Fe-2S] binding domain BG01_3103 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BG01_3103 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BG01_3103 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG01_3104 PF00355 Rieske [2Fe-2S] domain BG01_3105 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BG01_3106 PF01903 CbiX BG01_3110 PF07690 Major Facilitator Superfamily BG01_3112 PF02391 MoaE protein BG01_3113 PF03453 MoeA N-terminal region (domain I and II) BG01_3113 PF00994 Probable molybdopterin binding domain BG01_3113 PF03454 MoeA C-terminal region (domain IV) BG01_3114 PF00899 ThiF family BG01_3115 PF06463 Molybdenum Cofactor Synthesis C BG01_3115 PF04055 Radical SAM superfamily BG01_3116 PF00027 Cyclic nucleotide-binding domain BG01_3116 PF00325 Bacterial regulatory proteins, crp family BG01_3118 PF00005 ABC transporter BG01_3119 PF00392 Bacterial regulatory proteins, gntR family BG01_3119 PF00155 Aminotransferase class I and II BG01_3120 PF02665 Nitrate reductase gamma subunit BG01_3121 PF02613 Nitrate reductase delta subunit BG01_3122 PF13247 4Fe-4S dicluster domain BG01_3122 PF14711 Respiratory nitrate reductase beta C-terminal BG01_3123 PF00384 Molybdopterin oxidoreductase BG01_3123 PF01568 Molydopterin dinucleotide binding domain BG01_3123 PF14710 Respiratory nitrate reductase alpha N-terminal BG01_3126 PF17863 AAA lid domain BG01_3126 PF07726 ATPase family associated with various cellular activities (AAA) BG01_3127 PF01882 Protein of unknown function DUF58 BG01_3128 PF01841 Transglutaminase-like superfamily BG01_3128 PF11992 Domain of unknown function (DUF3488) BG01_3128 PF13559 Domain of unknown function (DUF4129) BG01_3129 PF00255 Glutathione peroxidase BG01_313 PF00072 Response regulator receiver domain BG01_313 PF00486 Transcriptional regulatory protein, C terminal BG01_3134 PF04542 Sigma-70 region 2 BG01_3134 PF08281 Sigma-70, region 4 BG01_3135 PF00107 Zinc-binding dehydrogenase BG01_3135 PF08240 Alcohol dehydrogenase GroES-like domain BG01_3137 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG01_3138 PF01261 Xylose isomerase-like TIM barrel BG01_3139 PF00270 DEAD/DEAH box helicase BG01_3139 PF00271 Helicase conserved C-terminal domain BG01_314 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_314 PF00672 HAMP domain BG01_314 PF00512 His Kinase A (phospho-acceptor) domain BG01_3141 PF01268 Formate--tetrahydrofolate ligase BG01_3142 PF01209 ubiE/COQ5 methyltransferase family BG01_3147 PF09579 Sporulation protein YtfJ (Spore_YtfJ) BG01_315 PF09515 Thiamine transporter protein (Thia_YuaJ) BG01_3156 PF00583 Acetyltransferase (GNAT) family BG01_3162 PF00392 Bacterial regulatory proteins, gntR family BG01_3162 PF00155 Aminotransferase class I and II BG01_3163 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BG01_3163 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BG01_3164 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase BG01_3168 PF01168 Alanine racemase, N-terminal domain BG01_3168 PF00842 Alanine racemase, C-terminal domain BG01_317 PF02421 Ferrous iron transport protein B BG01_317 PF07670 Nucleoside recognition BG01_317 PF07664 Ferrous iron transport protein B C terminus BG01_317 PF17910 FeoB cytosolic helical domain BG01_3171 PF00300 Histidine phosphatase superfamily (branch 1) BG01_3172 PF01145 SPFH domain / Band 7 family BG01_3174 PF07690 Major Facilitator Superfamily BG01_3175 PF01425 Amidase BG01_3177 PF02557 D-alanyl-D-alanine carboxypeptidase BG01_3179 PF07454 Stage II sporulation protein P (SpoIIP) BG01_3182 PF01588 Putative tRNA binding domain BG01_3183 PF05525 Branched-chain amino acid transport protein BG01_3186 PF03471 Transporter associated domain BG01_3186 PF01595 Cyclin M transmembrane N-terminal domain BG01_3186 PF00571 CBS domain BG01_3187 PF04306 Protein of unknown function (DUF456) BG01_3188 PF13460 NAD(P)H-binding BG01_3191 PF13091 PLD-like domain BG01_3191 PF13396 Phospholipase_D-nuclease N-terminal BG01_3192 PF03061 Thioesterase superfamily BG01_3193 PF09323 Domain of unknown function (DUF1980) BG01_3194 PF03773 Predicted permease BG01_3196 PF14667 Polysaccharide biosynthesis C-terminal domain BG01_3196 PF01943 Polysaccharide biosynthesis protein BG01_3197 PF09335 SNARE associated Golgi protein BG01_3198 PF00293 NUDIX domain BG01_3199 PF08757 CotH kinase protein BG01_32 PF03880 DbpA RNA binding domain BG01_32 PF00270 DEAD/DEAH box helicase BG01_32 PF00271 Helicase conserved C-terminal domain BG01_3201 PF00300 Histidine phosphatase superfamily (branch 1) BG01_3203 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG01_3204 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG01_3206 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BG01_3206 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BG01_3207 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BG01_3208 PF13460 NAD(P)H-binding BG01_321 PF04012 PspA/IM30 family BG01_3210 PF01297 Zinc-uptake complex component A periplasmic BG01_3210 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment BG01_3221 PF00583 Acetyltransferase (GNAT) family BG01_3222 PF02492 CobW/HypB/UreG, nucleotide-binding domain BG01_3222 PF07683 Cobalamin synthesis protein cobW C-terminal domain BG01_3223 PF00248 Aldo/keto reductase family BG01_3225 PF01593 Flavin containing amine oxidoreductase BG01_3227 PF00296 Luciferase-like monooxygenase BG01_3230 PF00210 Ferritin-like domain BG01_3234 PF00672 HAMP domain BG01_3234 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG01_3234 PF02743 Cache domain BG01_3235 PF03193 RsgA GTPase BG01_3239 PF07690 Major Facilitator Superfamily BG01_3240 PF00248 Aldo/keto reductase family BG01_3241 PF01022 Bacterial regulatory protein, arsR family BG01_3242 PF00082 Subtilase family BG01_3243 PF18277 AbrB C-terminal domain BG01_3243 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BG01_3244 PF02687 FtsX-like permease family BG01_3245 PF02687 FtsX-like permease family BG01_3246 PF02540 NAD synthase BG01_3247 PF00293 NUDIX domain BG01_3247 PF13344 Haloacid dehalogenase-like hydrolase BG01_3252 PF01734 Patatin-like phospholipase BG01_3254 PF01810 LysE type translocator BG01_3255 PF07690 Major Facilitator Superfamily BG01_3256 PF07690 Major Facilitator Superfamily BG01_3257 PF07690 Major Facilitator Superfamily BG01_3258 PF00269 Small, acid-soluble spore proteins, alpha/beta type BG01_3259 PF01261 Xylose isomerase-like TIM barrel BG01_326 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BG01_326 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BG01_3262 PF00501 AMP-binding enzyme BG01_3262 PF13193 AMP-binding enzyme C-terminal domain BG01_3263 PF06276 Ferric iron reductase FhuF-like transporter BG01_3263 PF04183 IucA / IucC family BG01_3264 PF06276 Ferric iron reductase FhuF-like transporter BG01_3264 PF04183 IucA / IucC family BG01_3265 PF00583 Acetyltransferase (GNAT) family BG01_3266 PF02308 MgtC family BG01_3268 PF01522 Polysaccharide deacetylase BG01_3269 PF16736 Single Cache-like BG01_3269 PF00989 PAS fold BG01_3269 PF00512 His Kinase A (phospho-acceptor) domain BG01_3269 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_3270 PF00072 Response regulator receiver domain BG01_3270 PF00486 Transcriptional regulatory protein, C terminal BG01_3272 PF03816 Cell envelope-related transcriptional attenuator domain BG01_3275 PF08544 GHMP kinases C terminal BG01_3275 PF00288 GHMP kinases N terminal domain BG01_3276 PF00291 Pyridoxal-phosphate dependent enzyme BG01_3277 PF03447 Homoserine dehydrogenase, NAD binding domain BG01_3277 PF00742 Homoserine dehydrogenase BG01_3277 PF01842 ACT domain BG01_3281 PF01522 Polysaccharide deacetylase BG01_3281 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain BG01_3282 PF04439 Streptomycin adenylyltransferase BG01_3283 PF00106 short chain dehydrogenase BG01_3285 PF16736 Single Cache-like BG01_3285 PF00989 PAS fold BG01_3285 PF00512 His Kinase A (phospho-acceptor) domain BG01_3285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_3286 PF00486 Transcriptional regulatory protein, C terminal BG01_3286 PF00072 Response regulator receiver domain BG01_3287 PF00664 ABC transporter transmembrane region BG01_3287 PF00005 ABC transporter BG01_3288 PF00664 ABC transporter transmembrane region BG01_3288 PF00005 ABC transporter BG01_329 PF10676 Spore germination protein gerPA/gerPF BG01_3290 PF01476 LysM domain BG01_3290 PF00877 NlpC/P60 family BG01_3292 PF00768 D-alanyl-D-alanine carboxypeptidase BG01_3292 PF07943 Penicillin-binding protein 5, C-terminal domain BG01_3293 PF17676 LD-carboxypeptidase C-terminal domain BG01_3293 PF02016 LD-carboxypeptidase N-terminal domain BG01_3296 PF00664 ABC transporter transmembrane region BG01_3296 PF00005 ABC transporter BG01_3297 PF00005 ABC transporter BG01_3297 PF00664 ABC transporter transmembrane region BG01_3298 PF02322 Cytochrome bd terminal oxidase subunit II BG01_3299 PF01654 Cytochrome bd terminal oxidase subunit I BG01_330 PF02322 Cytochrome bd terminal oxidase subunit II BG01_3301 PF01047 MarR family BG01_3305 PF03466 LysR substrate binding domain BG01_3305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG01_3307 PF02653 Branched-chain amino acid transport system / permease component BG01_3308 PF00005 ABC transporter BG01_3309 PF00005 ABC transporter BG01_3309 PF12399 Branched-chain amino acid ATP-binding cassette transporter BG01_331 PF01654 Cytochrome bd terminal oxidase subunit I BG01_3311 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BG01_3311 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BG01_3312 PF01575 MaoC like domain BG01_3313 PF00501 AMP-binding enzyme BG01_3313 PF13193 AMP-binding enzyme C-terminal domain BG01_3316 PF07683 Cobalamin synthesis protein cobW C-terminal domain BG01_3316 PF02492 CobW/HypB/UreG, nucleotide-binding domain BG01_3317 PF01593 Flavin containing amine oxidoreductase BG01_3318 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BG01_3318 PF00056 lactate/malate dehydrogenase, NAD binding domain BG01_3319 PF01594 AI-2E family transporter BG01_332 PF01809 Putative membrane protein insertion efficiency factor BG01_3320 PF01425 Amidase BG01_3322 PF00881 Nitroreductase family BG01_3323 PF01323 DSBA-like thioredoxin domain BG01_3324 PF02082 Transcriptional regulator BG01_3325 PF03466 LysR substrate binding domain BG01_3325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG01_3326 PF00892 EamA-like transporter family BG01_3328 PF07987 Domain of unkown function (DUF1775) BG01_3329 PF04234 CopC domain BG01_3329 PF05425 Copper resistance protein D BG01_3329 PF13115 YtkA-like BG01_333 PF00484 Carbonic anhydrase BG01_3331 PF05525 Branched-chain amino acid transport protein BG01_3332 PF05525 Branched-chain amino acid transport protein BG01_3333 PF02525 Flavodoxin-like fold BG01_3338 PF01551 Peptidase family M23 BG01_3339 PF07731 Multicopper oxidase BG01_3339 PF07732 Multicopper oxidase BG01_334 PF02664 S-Ribosylhomocysteinase (LuxS) BG01_3340 PF05195 Aminopeptidase P, N-terminal domain BG01_3340 PF00557 Metallopeptidase family M24 BG01_3344 PF05979 Bacterial protein of unknown function (DUF896) BG01_3345 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BG01_3346 PF02885 Glycosyl transferase family, helical bundle domain BG01_3346 PF00591 Glycosyl transferase family, a/b domain BG01_3346 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain BG01_3347 PF07662 Na+ dependent nucleoside transporter C-terminus BG01_3347 PF01773 Na+ dependent nucleoside transporter N-terminus BG01_3348 PF01791 DeoC/LacD family aldolase BG01_3349 PF04198 Putative sugar-binding domain BG01_3351 PF05791 Bacillus haemolytic enterotoxin (HBL) BG01_3352 PF05791 Bacillus haemolytic enterotoxin (HBL) BG01_3354 PF13520 Amino acid permease BG01_3355 PF13520 Amino acid permease BG01_3357 PF08546 Ketopantoate reductase PanE/ApbA C terminal BG01_3357 PF02558 Ketopantoate reductase PanE/ApbA BG01_3360 PF01566 Natural resistance-associated macrophage protein BG01_3362 PF00512 His Kinase A (phospho-acceptor) domain BG01_3362 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_3364 PF00072 Response regulator receiver domain BG01_3364 PF00486 Transcriptional regulatory protein, C terminal BG01_3365 PF13302 Acetyltransferase (GNAT) domain BG01_3366 PF04055 Radical SAM superfamily BG01_3366 PF13186 Iron-sulfur cluster-binding domain BG01_3371 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG01_3372 PF12146 Serine aminopeptidase, S33 BG01_3372 PF13026 Protein of unknown function (DUF3887) BG01_3373 PF01979 Amidohydrolase family BG01_3378 PF04397 LytTr DNA-binding domain BG01_3378 PF00072 Response regulator receiver domain BG01_338 PF00293 NUDIX domain BG01_3380 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BG01_3381 PF07690 Major Facilitator Superfamily BG01_3384 PF09587 Bacterial capsule synthesis protein PGA_cap BG01_3386 PF00585 C-terminal regulatory domain of Threonine dehydratase BG01_3386 PF00291 Pyridoxal-phosphate dependent enzyme BG01_3387 PF00920 Dehydratase family BG01_3388 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BG01_3388 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BG01_3389 PF10369 Small subunit of acetolactate synthase BG01_3390 PF00205 Thiamine pyrophosphate enzyme, central domain BG01_3390 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BG01_3390 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BG01_3391 PF01063 Amino-transferase class IV BG01_3393 PF01625 Peptide methionine sulfoxide reductase BG01_3397 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BG01_3397 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BG01_34 PF00478 IMP dehydrogenase / GMP reductase domain BG01_3400 PF04239 Protein of unknown function (DUF421) BG01_3402 PF03422 Carbohydrate binding module (family 6) BG01_3402 PF01522 Polysaccharide deacetylase BG01_3402 PF00457 Glycosyl hydrolases family 11 BG01_3403 PF00209 Sodium:neurotransmitter symporter family BG01_3404 PF14667 Polysaccharide biosynthesis C-terminal domain BG01_3404 PF01943 Polysaccharide biosynthesis protein BG01_3407 PF00291 Pyridoxal-phosphate dependent enzyme BG01_3408 PF07690 Major Facilitator Superfamily BG01_3409 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG01_3411 PF13167 GTP-binding GTPase N-terminal BG01_3411 PF01926 50S ribosome-binding GTPase BG01_3411 PF16360 GTP-binding GTPase Middle Region BG01_3413 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BG01_3413 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BG01_3414 PF07690 Major Facilitator Superfamily BG01_3415 PF07690 Major Facilitator Superfamily BG01_3416 PF03976 Polyphosphate kinase 2 (PPK2) BG01_3417 PF02554 Carbon starvation protein CstA BG01_3420 PF07690 Major Facilitator Superfamily BG01_3422 PF02368 Bacterial Ig-like domain (group 2) BG01_3422 PF13205 Bacterial Ig-like domain BG01_3422 PF00395 S-layer homology domain BG01_3423 PF00293 NUDIX domain BG01_3424 PF14158 YndJ-like protein BG01_3425 PF13761 Domain of unknown function (DUF4166) BG01_3428 PF13840 ACT domain BG01_3428 PF00696 Amino acid kinase family BG01_3432 PF03590 Aspartate-ammonia ligase BG01_3434 PF04434 SWIM zinc finger BG01_3434 PF00271 Helicase conserved C-terminal domain BG01_3434 PF00176 SNF2 family N-terminal domain BG01_3435 PF08664 YcbB domain BG01_3435 PF00072 Response regulator receiver domain BG01_3436 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_3437 PF03949 Malic enzyme, NAD binding domain BG01_3437 PF00390 Malic enzyme, N-terminal domain BG01_3438 PF10415 Fumarase C C-terminus BG01_3438 PF00206 Lyase BG01_3439 PF00375 Sodium:dicarboxylate symporter family BG01_344 PF00528 Binding-protein-dependent transport system inner membrane component BG01_3440 PF00696 Amino acid kinase family BG01_3441 PF13091 PLD-like domain BG01_3444 PF00005 ABC transporter BG01_3445 PF13492 GAF domain BG01_3445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_3445 PF13185 GAF domain BG01_3445 PF07730 Histidine kinase BG01_3446 PF00196 Bacterial regulatory proteins, luxR family BG01_3446 PF00072 Response regulator receiver domain BG01_345 PF00005 ABC transporter BG01_3451 PF04286 Protein of unknown function (DUF445) BG01_3452 PF00291 Pyridoxal-phosphate dependent enzyme BG01_3457 PF00578 AhpC/TSA family BG01_3458 PF02683 Cytochrome C biogenesis protein transmembrane region BG01_3462 PF03575 Peptidase family S51 BG01_3463 PF01554 MatE BG01_3464 PF01554 MatE BG01_3468 PF00206 Lyase BG01_3468 PF10415 Fumarase C C-terminus BG01_3469 PF03553 Na+/H+ antiporter family BG01_3470 PF00535 Glycosyl transferase family 2 BG01_3472 PF03773 Predicted permease BG01_3473 PF02492 CobW/HypB/UreG, nucleotide-binding domain BG01_3473 PF07683 Cobalamin synthesis protein cobW C-terminal domain BG01_3474 PF00892 EamA-like transporter family BG01_3475 PF07729 FCD domain BG01_3475 PF00392 Bacterial regulatory proteins, gntR family BG01_3477 PF01545 Cation efflux family BG01_3477 PF16916 Dimerisation domain of Zinc Transporter BG01_3481 PF00733 Asparagine synthase BG01_3481 PF13537 Glutamine amidotransferase domain BG01_3488 PF00300 Histidine phosphatase superfamily (branch 1) BG01_3490 PF00768 D-alanyl-D-alanine carboxypeptidase BG01_3490 PF07943 Penicillin-binding protein 5, C-terminal domain BG01_3493 PF10787 Uncharacterised protein from bacillus cereus group BG01_3495 PF12706 Beta-lactamase superfamily domain BG01_3495 PF00753 Metallo-beta-lactamase superfamily BG01_3496 PF00528 Binding-protein-dependent transport system inner membrane component BG01_3498 PF08402 TOBE domain BG01_3498 PF00005 ABC transporter BG01_35 PF01432 Peptidase family M3 BG01_35 PF08439 Oligopeptidase F BG01_350 PF00884 Sulfatase BG01_3503 PF08141 Small acid-soluble spore protein H family BG01_3504 PF03992 Antibiotic biosynthesis monooxygenase BG01_3507 PF17329 Family of unknown function (DUF5367) BG01_3508 PF00440 Bacterial regulatory proteins, tetR family BG01_3508 PF17932 Tetracyclin repressor-like, C-terminal domain BG01_351 PF08386 TAP-like protein BG01_351 PF00561 alpha/beta hydrolase fold BG01_3513 PF02272 DHHA1 domain BG01_3513 PF01411 tRNA synthetases class II (A) BG01_3513 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BG01_3514 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BG01_3514 PF00460 Flagella basal body rod protein BG01_3517 PF00771 FHIPEP family BG01_3518 PF01312 FlhB HrpN YscU SpaS Family BG01_352 PF08447 PAS fold BG01_352 PF00989 PAS fold BG01_352 PF00512 His Kinase A (phospho-acceptor) domain BG01_352 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_3520 PF01313 Bacterial export proteins, family 3 BG01_3521 PF00813 FliP family BG01_3523 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BG01_3523 PF04509 CheC-like family BG01_3525 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BG01_3525 PF02154 Flagellar motor switch protein FliM BG01_3526 PF01464 Transglycosylase SLT domain BG01_3527 PF00669 Bacterial flagellin N-terminal helical region BG01_3527 PF00700 Bacterial flagellin C-terminal helical region BG01_353 PF13188 PAS domain BG01_353 PF00989 PAS fold BG01_353 PF00512 His Kinase A (phospho-acceptor) domain BG01_353 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_353 PF13426 PAS domain BG01_3532 PF13181 Tetratricopeptide repeat BG01_3532 PF00535 Glycosyl transferase family 2 BG01_3538 PF00535 Glycosyl transferase family 2 BG01_3539 PF12181 DNA binding domain of the motility gene repressor (MogR) BG01_354 PF01784 NIF3 (NGG1p interacting factor 3) BG01_3540 PF01584 CheW-like domain BG01_3540 PF00072 Response regulator receiver domain BG01_3544 PF07559 Flagellar basal body protein FlaE BG01_3544 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BG01_3544 PF00460 Flagella basal body rod protein BG01_3549 PF02874 ATP synthase alpha/beta family, beta-barrel domain BG01_3549 PF18269 T3SS EscN ATPase C-terminal domain BG01_3549 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BG01_3551 PF14842 FliG N-terminal domain BG01_3551 PF14841 FliG middle domain BG01_3551 PF01706 FliG C-terminal domain BG01_3553 PF08345 Flagellar M-ring protein C-terminal BG01_3553 PF01514 Secretory protein of YscJ/FliF family BG01_3554 PF02049 Flagellar hook-basal body complex protein FliE BG01_3555 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BG01_3555 PF00460 Flagella basal body rod protein BG01_3556 PF00460 Flagella basal body rod protein BG01_3561 PF00700 Bacterial flagellin C-terminal helical region BG01_3561 PF00669 Bacterial flagellin N-terminal helical region BG01_3562 PF00460 Flagella basal body rod protein BG01_3562 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BG01_3566 PF01739 CheR methyltransferase, SAM binding domain BG01_3566 PF03705 CheR methyltransferase, all-alpha domain BG01_3569 PF04509 CheC-like family BG01_3569 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BG01_3570 PF01584 CheW-like domain BG01_3570 PF07194 P2 response regulator binding domain BG01_3570 PF01627 Hpt domain BG01_3570 PF02895 Signal transducing histidine kinase, homodimeric domain BG01_3570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_3571 PF01584 CheW-like domain BG01_3571 PF01627 Hpt domain BG01_3571 PF02895 Signal transducing histidine kinase, homodimeric domain BG01_3571 PF07194 P2 response regulator binding domain BG01_3571 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_3572 PF00072 Response regulator receiver domain BG01_3573 PF00691 OmpA family BG01_3573 PF13677 Membrane MotB of proton-channel complex MotA/MotB BG01_3574 PF01618 MotA/TolQ/ExbB proton channel family BG01_3576 PF17209 Hfq protein BG01_3585 PF00881 Nitroreductase family BG01_3587 PF02698 DUF218 domain BG01_3588 PF04239 Protein of unknown function (DUF421) BG01_3592 PF17770 Ribonuclease J C-terminal domain BG01_3592 PF00753 Metallo-beta-lactamase superfamily BG01_3592 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BG01_3593 PF00999 Sodium/hydrogen exchanger family BG01_3595 PF00202 Aminotransferase class-III BG01_3596 PF00474 Sodium:solute symporter family BG01_3597 PF04341 Protein of unknown function, DUF485 BG01_360 PF01293 Phosphoenolpyruvate carboxykinase BG01_3600 PF01810 LysE type translocator BG01_3602 PF00313 'Cold-shock' DNA-binding domain BG01_3607 PF01263 Aldose 1-epimerase BG01_3608 PF13456 Reverse transcriptase-like BG01_361 PF00438 S-adenosylmethionine synthetase, N-terminal domain BG01_361 PF02772 S-adenosylmethionine synthetase, central domain BG01_361 PF02773 S-adenosylmethionine synthetase, C-terminal domain BG01_3612 PF13673 Acetyltransferase (GNAT) domain BG01_3612 PF18014 Acetyltransferase (GNAT) domain BG01_3618 PF00535 Glycosyl transferase family 2 BG01_3621 PF02397 Bacterial sugar transferase BG01_3627 PF01367 5'-3' exonuclease, C-terminal SAM fold BG01_3627 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BG01_3628 PF00690 Cation transporter/ATPase, N-terminus BG01_3628 PF00689 Cation transporting ATPase, C-terminus BG01_3630 PF03738 Glutathionylspermidine synthase preATP-grasp BG01_3633 PF00581 Rhodanese-like domain BG01_3634 PF10752 Protein of unknown function (DUF2533) BG01_3635 PF00583 Acetyltransferase (GNAT) family BG01_3637 PF00350 Dynamin family BG01_3639 PF04235 Protein of unknown function (DUF418) BG01_364 PF00994 Probable molybdopterin binding domain BG01_3640 PF00860 Permease family BG01_3641 PF00156 Phosphoribosyl transferase domain BG01_3642 PF00557 Metallopeptidase family M24 BG01_3643 PF01636 Phosphotransferase enzyme family BG01_3645 PF02074 Carboxypeptidase Taq (M32) metallopeptidase BG01_3646 PF13307 Helicase C-terminal domain BG01_3648 PF01170 Putative RNA methylase family UPF0020 BG01_3648 PF02926 THUMP domain BG01_3649 PF05103 DivIVA protein BG01_365 PF12804 MobA-like NTP transferase domain BG01_3650 PF06908 YspA SLOG family BG01_3657 PF10720 Protein of unknown function (DUF2515) BG01_3658 PF03838 Recombination protein U BG01_3659 PF00905 Penicillin binding protein transpeptidase domain BG01_3659 PF00912 Transglycosylase BG01_366 PF13439 Glycosyltransferase Family 4 BG01_366 PF00534 Glycosyl transferases group 1 BG01_3661 PF00633 Helix-hairpin-helix motif BG01_3661 PF10576 Iron-sulfur binding domain of endonuclease III BG01_3661 PF00730 HhH-GPD superfamily base excision DNA repair protein BG01_3662 PF07261 Replication initiation and membrane attachment BG01_3663 PF00155 Aminotransferase class I and II BG01_3665 PF14084 Protein of unknown function (DUF4264) BG01_3666 PF13307 Helicase C-terminal domain BG01_3666 PF00929 Exonuclease BG01_3666 PF04851 Type III restriction enzyme, res subunit BG01_3667 PF02261 Aspartate decarboxylase BG01_3668 PF02569 Pantoate-beta-alanine ligase BG01_3669 PF02548 Ketopantoate hydroxymethyltransferase BG01_367 PF01569 PAP2 superfamily BG01_3671 PF02237 Biotin protein ligase C terminal domain BG01_3671 PF03099 Biotin/lipoate A/B protein ligase family BG01_3671 PF08279 HTH domain BG01_3672 PF01743 Poly A polymerase head domain BG01_3672 PF12627 Probable RNA and SrmB- binding site of polymerase A BG01_3672 PF13735 tRNA nucleotidyltransferase domain 2 putative BG01_3673 PF00534 Glycosyl transferases group 1 BG01_3673 PF13439 Glycosyltransferase Family 4 BG01_3674 PF02585 GlcNAc-PI de-N-acetylase BG01_3675 PF02142 MGS-like domain BG01_3676 PF05173 Dihydrodipicolinate reductase, C-terminus BG01_3676 PF01113 Dihydrodipicolinate reductase, N-terminus BG01_3677 PF03819 MazG nucleotide pyrophosphohydrolase domain BG01_3678 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BG01_3678 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BG01_368 PF00132 Bacterial transferase hexapeptide (six repeats) BG01_3680 PF04298 Putative neutral zinc metallopeptidase BG01_3681 PF09577 Sporulation protein YpjB (SpoYpjB) BG01_3683 PF07187 Protein of unknown function (DUF1405) BG01_3684 PF00032 Cytochrome b(C-terminal)/b6/petD BG01_3684 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BG01_3685 PF00033 Cytochrome b/b6/petB BG01_3686 PF00355 Rieske [2Fe-2S] domain BG01_3687 PF10673 Protein of unknown function (DUF2487) BG01_3688 PF08864 UPF0302 domain BG01_3688 PF08858 IDEAL domain BG01_369 PF12146 Serine aminopeptidase, S33 BG01_3690 PF00155 Aminotransferase class I and II BG01_3691 PF01761 3-dehydroquinate synthase BG01_3692 PF01264 Chorismate synthase BG01_3693 PF00334 Nucleoside diphosphate kinase BG01_3694 PF00348 Polyprenyl synthetase BG01_3695 PF01209 ubiE/COQ5 methyltransferase family BG01_3696 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 BG01_3697 PF01227 GTP cyclohydrolase I BG01_3698 PF00216 Bacterial DNA-binding protein BG01_3699 PF09547 Stage IV sporulation protein A (spore_IV_A) BG01_37 PF02590 Predicted SPOUT methyltransferase BG01_370 PF10776 Protein of unknown function (DUF2600) BG01_3701 PF10966 Protein of unknown function (DUF2768) BG01_3703 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BG01_3703 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BG01_3704 PF01926 50S ribosome-binding GTPase BG01_3704 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BG01_3706 PF14045 YIEGIA protein BG01_3708 PF14140 YpzI-like protein BG01_3709 PF01070 FMN-dependent dehydrogenase BG01_3710 PF00575 S1 RNA binding domain BG01_3711 PF02224 Cytidylate kinase BG01_3713 PF17763 Glutaminase/Asparaginase C-terminal domain BG01_3713 PF00710 Asparaginase, N-terminal BG01_3718 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BG01_3718 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BG01_3719 PF05389 Negative regulator of genetic competence (MecA) BG01_3720 PF02310 B12 binding domain BG01_3720 PF02607 B12 binding domain BG01_3720 PF13411 MerR HTH family regulatory protein BG01_3721 PF00149 Calcineurin-like phosphoesterase BG01_3723 PF02517 CPBP intramembrane metalloprotease BG01_3724 PF00270 DEAD/DEAH box helicase BG01_3724 PF00271 Helicase conserved C-terminal domain BG01_3725 PF14493 Helix-turn-helix domain BG01_3727 PF12822 ECF transporter, substrate-specific component BG01_373 PF01177 Asp/Glu/Hydantoin racemase BG01_3730 PF01923 Cobalamin adenosyltransferase BG01_3731 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_3731 PF00989 PAS fold BG01_3731 PF00512 His Kinase A (phospho-acceptor) domain BG01_3731 PF18698 Histidine kinase sensor domain BG01_3731 PF00672 HAMP domain BG01_3732 PF00486 Transcriptional regulatory protein, C terminal BG01_3732 PF00072 Response regulator receiver domain BG01_3733 PF01578 Cytochrome C assembly protein BG01_3734 PF05140 ResB-like family BG01_3735 PF00578 AhpC/TSA family BG01_3736 PF01479 S4 domain BG01_3736 PF00849 RNA pseudouridylate synthase BG01_3737 PF07670 Nucleoside recognition BG01_3738 PF07670 Nucleoside recognition BG01_3739 PF00768 D-alanyl-D-alanine carboxypeptidase BG01_3739 PF07943 Penicillin-binding protein 5, C-terminal domain BG01_3740 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BG01_3740 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BG01_3743 PF03706 Lysylphosphatidylglycerol synthase TM region BG01_3743 PF09924 Uncharacterised conserved protein (DUF2156) BG01_3746 PF01048 Phosphorylase superfamily BG01_3747 PF00989 PAS fold BG01_3747 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_3747 PF00512 His Kinase A (phospho-acceptor) domain BG01_3747 PF16736 Single Cache-like BG01_3748 PF00589 Phage integrase family BG01_375 PF00005 ABC transporter BG01_375 PF13732 Domain of unknown function (DUF4162) BG01_3750 PF01904 Protein of unknown function DUF72 BG01_3751 PF00989 PAS fold BG01_3751 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_3751 PF00512 His Kinase A (phospho-acceptor) domain BG01_3754 PF00912 Transglycosylase BG01_3754 PF00905 Penicillin binding protein transpeptidase domain BG01_3755 PF01865 Protein of unknown function DUF47 BG01_3756 PF01384 Phosphate transporter family BG01_3757 PF01925 Sulfite exporter TauE/SafE BG01_376 PF06962 Putative rRNA methylase BG01_3760 PF00042 Globin BG01_3760 PF00175 Oxidoreductase NAD-binding domain BG01_3760 PF00970 Oxidoreductase FAD-binding domain BG01_3765 PF08241 Methyltransferase domain BG01_3767 PF05525 Branched-chain amino acid transport protein BG01_3769 PF00196 Bacterial regulatory proteins, luxR family BG01_3769 PF00072 Response regulator receiver domain BG01_377 PF04055 Radical SAM superfamily BG01_377 PF16199 Radical_SAM C-terminal domain BG01_3770 PF07730 Histidine kinase BG01_3770 PF00672 HAMP domain BG01_3770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_3771 PF09922 Cell wall-active antibiotics response 4TMS YvqF BG01_3774 PF03553 Na+/H+ antiporter family BG01_3776 PF00375 Sodium:dicarboxylate symporter family BG01_3778 PF00209 Sodium:neurotransmitter symporter family BG01_378 PF10732 Protein of unknown function (DUF2524) BG01_3780 PF01903 CbiX BG01_3781 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BG01_3783 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BG01_3783 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BG01_3785 PF14306 PUA-like domain BG01_3785 PF01747 ATP-sulfurylase BG01_3786 PF01507 Phosphoadenosine phosphosulfate reductase family BG01_3788 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BG01_3788 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BG01_3790 PF00884 Sulfatase BG01_3791 PF01066 CDP-alcohol phosphatidyltransferase BG01_3792 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BG01_3792 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BG01_3794 PF02811 PHP domain BG01_3795 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BG01_3796 PF01502 Phosphoribosyl-AMP cyclohydrolase BG01_3797 PF00977 Histidine biosynthesis protein BG01_3798 PF00977 Histidine biosynthesis protein BG01_3799 PF00117 Glutamine amidotransferase class-I BG01_380 PF04235 Protein of unknown function (DUF418) BG01_380 PF07786 Protein of unknown function (DUF1624) BG01_3800 PF00475 Imidazoleglycerol-phosphate dehydratase BG01_3801 PF00815 Histidinol dehydrogenase BG01_3802 PF01634 ATP phosphoribosyltransferase BG01_3803 PF13393 Histidyl-tRNA synthetase BG01_3804 PF00694 Aconitase C-terminal domain BG01_3805 PF00330 Aconitase family (aconitate hydratase) BG01_3806 PF00180 Isocitrate/isopropylmalate dehydrogenase BG01_3807 PF08502 LeuA allosteric (dimerisation) domain BG01_3807 PF00682 HMGL-like BG01_3808 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BG01_3808 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BG01_3809 PF10369 Small subunit of acetolactate synthase BG01_3809 PF01842 ACT domain BG01_381 PF00005 ABC transporter BG01_3810 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BG01_3810 PF00205 Thiamine pyrophosphate enzyme, central domain BG01_3810 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BG01_3811 PF01063 Amino-transferase class IV BG01_3814 PF03698 Uncharacterised protein family (UPF0180) BG01_3816 PF09579 Sporulation protein YtfJ (Spore_YtfJ) BG01_3818 PF02386 Cation transport protein BG01_3819 PF00375 Sodium:dicarboxylate symporter family BG01_3821 PF01047 MarR family BG01_3824 PF02673 Bacitracin resistance protein BacA BG01_3825 PF01554 MatE BG01_3829 PF01636 Phosphotransferase enzyme family BG01_383 PF00589 Phage integrase family BG01_3832 PF00258 Flavodoxin BG01_3834 PF01546 Peptidase family M20/M25/M40 BG01_3834 PF07687 Peptidase dimerisation domain BG01_3836 PF00501 AMP-binding enzyme BG01_3836 PF13193 AMP-binding enzyme C-terminal domain BG01_3837 PF03062 MBOAT, membrane-bound O-acyltransferase family BG01_3838 PF00550 Phosphopantetheine attachment site BG01_3839 PF04914 DltD protein BG01_384 PF02080 TrkA-C domain BG01_3840 PF03060 Nitronate monooxygenase BG01_3841 PF02016 LD-carboxypeptidase N-terminal domain BG01_3841 PF17676 LD-carboxypeptidase C-terminal domain BG01_3843 PF00857 Isochorismatase family BG01_3845 PF01037 Lrp/AsnC ligand binding domain BG01_3849 PF00005 ABC transporter BG01_385 PF00999 Sodium/hydrogen exchanger family BG01_3851 PF00005 ABC transporter BG01_3852 PF00392 Bacterial regulatory proteins, gntR family BG01_3853 PF00268 Ribonucleotide reductase, small chain BG01_3854 PF02867 Ribonucleotide reductase, barrel domain BG01_3854 PF08343 Ribonucleotide reductase N-terminal BG01_3854 PF00317 Ribonucleotide reductase, all-alpha domain BG01_3856 PF00317 Ribonucleotide reductase, all-alpha domain BG01_3856 PF02867 Ribonucleotide reductase, barrel domain BG01_3856 PF08343 Ribonucleotide reductase N-terminal BG01_3857 PF07972 NrdI Flavodoxin like BG01_386 PF07690 Major Facilitator Superfamily BG01_3864 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) BG01_3865 PF14489 QueF-like protein BG01_3866 PF04055 Radical SAM superfamily BG01_3867 PF01242 6-pyruvoyl tetrahydropterin synthase BG01_3868 PF06508 Queuosine biosynthesis protein QueC BG01_3869 PF13426 PAS domain BG01_3869 PF00989 PAS fold BG01_3869 PF13188 PAS domain BG01_3869 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_3869 PF00512 His Kinase A (phospho-acceptor) domain BG01_387 PF00133 tRNA synthetases class I (I, L, M and V) BG01_387 PF08264 Anticodon-binding domain of tRNA BG01_387 PF09334 tRNA synthetases class I (M) BG01_387 PF13603 Leucyl-tRNA synthetase, Domain 2 BG01_3871 PF12867 DinB superfamily BG01_3873 PF01047 MarR family BG01_3874 PF00512 His Kinase A (phospho-acceptor) domain BG01_3874 PF02743 Cache domain BG01_3874 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_3875 PF09388 Spo0E like sporulation regulatory protein BG01_3876 PF04748 Divergent polysaccharide deacetylase BG01_3878 PF00596 Class II Aldolase and Adducin N-terminal domain BG01_3879 PF00596 Class II Aldolase and Adducin N-terminal domain BG01_3880 PF01520 N-acetylmuramoyl-L-alanine amidase BG01_3880 PF00395 S-layer homology domain BG01_3884 PF00455 DeoR C terminal sensor domain BG01_3884 PF08220 DeoR-like helix-turn-helix domain BG01_3886 PF00266 Aminotransferase class-V BG01_3887 PF13419 Haloacid dehalogenase-like hydrolase BG01_3888 PF00528 Binding-protein-dependent transport system inner membrane component BG01_3890 PF00005 ABC transporter BG01_3891 PF00005 ABC transporter BG01_3891 PF08402 TOBE domain BG01_3896 PF02386 Cation transport protein BG01_3898 PF00561 alpha/beta hydrolase fold BG01_39 PF13180 PDZ domain BG01_3903 PF01575 MaoC like domain BG01_3904 PF00269 Small, acid-soluble spore proteins, alpha/beta type BG01_3905 PF02386 Cation transport protein BG01_3906 PF03741 Integral membrane protein TerC family BG01_3907 PF01226 Formate/nitrite transporter BG01_3909 PF06750 Bacterial Peptidase A24 N-terminal domain BG01_3909 PF01478 Type IV leader peptidase family BG01_3910 PF02589 LUD domain BG01_3911 PF02589 LUD domain BG01_3911 PF13183 4Fe-4S dicluster domain BG01_3911 PF11870 Domain of unknown function (DUF3390) BG01_3912 PF02754 Cysteine-rich domain BG01_3913 PF07729 FCD domain BG01_3913 PF00392 Bacterial regulatory proteins, gntR family BG01_3914 PF00989 PAS fold BG01_3914 PF00512 His Kinase A (phospho-acceptor) domain BG01_3914 PF18698 Histidine kinase sensor domain BG01_3914 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_3914 PF00672 HAMP domain BG01_3915 PF00486 Transcriptional regulatory protein, C terminal BG01_3915 PF00072 Response regulator receiver domain BG01_3917 PF13556 PucR C-terminal helix-turn-helix domain BG01_3917 PF05651 Putative sugar diacid recognition BG01_3917 PF17853 GGDEF-like domain BG01_3918 PF02913 FAD linked oxidases, C-terminal domain BG01_3918 PF01565 FAD binding domain BG01_3919 PF13183 4Fe-4S dicluster domain BG01_3919 PF02754 Cysteine-rich domain BG01_392 PF03845 Spore germination protein BG01_3920 PF00188 Cysteine-rich secretory protein family BG01_3922 PF01479 S4 domain BG01_3922 PF00849 RNA pseudouridylate synthase BG01_3924 PF03176 MMPL family BG01_3926 PF13416 Bacterial extracellular solute-binding protein BG01_3927 PF00528 Binding-protein-dependent transport system inner membrane component BG01_3928 PF00528 Binding-protein-dependent transport system inner membrane component BG01_3929 PF00005 ABC transporter BG01_3929 PF08402 TOBE domain BG01_393 PF03323 Bacillus/Clostridium GerA spore germination protein BG01_3930 PF00171 Aldehyde dehydrogenase family BG01_3931 PF05547 Immune inhibitor A peptidase M6 BG01_3932 PF01381 Helix-turn-helix BG01_3932 PF08671 Anti-repressor SinI BG01_3933 PF12389 Camelysin metallo-endopeptidase BG01_3935 PF12389 Camelysin metallo-endopeptidase BG01_3937 PF07943 Penicillin-binding protein 5, C-terminal domain BG01_3937 PF00768 D-alanyl-D-alanine carboxypeptidase BG01_3939 PF13649 Methyltransferase domain BG01_395 PF00561 alpha/beta hydrolase fold BG01_3950 PF01381 Helix-turn-helix BG01_3951 PF16870 2-oxoglutarate dehydrogenase C-terminal BG01_3951 PF00676 Dehydrogenase E1 component BG01_3951 PF02779 Transketolase, pyrimidine binding domain BG01_3952 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BG01_3952 PF02817 e3 binding domain BG01_3952 PF00364 Biotin-requiring enzyme BG01_3958 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BG01_3958 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG01_3962 PF10042 Uncharacterized conserved protein (DUF2278) BG01_3963 PF02652 L-lactate permease BG01_3965 PF00290 Tryptophan synthase alpha chain BG01_3966 PF00291 Pyridoxal-phosphate dependent enzyme BG01_3967 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BG01_3968 PF00218 Indole-3-glycerol phosphate synthase BG01_3969 PF02885 Glycosyl transferase family, helical bundle domain BG01_3969 PF00591 Glycosyl transferase family, a/b domain BG01_397 PF00581 Rhodanese-like domain BG01_3970 PF00117 Glutamine amidotransferase class-I BG01_3970 PF02885 Glycosyl transferase family, helical bundle domain BG01_3970 PF00591 Glycosyl transferase family, a/b domain BG01_3972 PF00474 Sodium:solute symporter family BG01_3973 PF02368 Bacterial Ig-like domain (group 2) BG01_3976 PF00756 Putative esterase BG01_3978 PF13673 Acetyltransferase (GNAT) domain BG01_3979 PF13361 UvrD-like helicase C-terminal domain BG01_3979 PF00580 UvrD/REP helicase N-terminal domain BG01_3982 PF07098 Protein of unknown function (DUF1360) BG01_3986 PF04321 RmlD substrate binding domain BG01_3987 PF16363 GDP-mannose 4,6 dehydratase BG01_3988 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BG01_3989 PF00483 Nucleotidyl transferase BG01_3993 PF13181 Tetratricopeptide repeat BG01_3993 PF00535 Glycosyl transferase family 2 BG01_3995 PF05711 Macrocin-O-methyltransferase (TylF) BG01_3996 PF08241 Methyltransferase domain BG01_3997 PF00535 Glycosyl transferase family 2 BG01_3998 PF01098 Cell cycle protein BG01_3999 PF01098 Cell cycle protein BG01_40 PF00753 Metallo-beta-lactamase superfamily BG01_4000 PF00149 Calcineurin-like phosphoesterase BG01_4003 PF00849 RNA pseudouridylate synthase BG01_4004 PF01513 ATP-NAD kinase BG01_4005 PF04607 Region found in RelA / SpoT proteins BG01_4007 PF01928 CYTH domain BG01_4008 PF01152 Bacterial-like globin BG01_401 PF06463 Molybdenum Cofactor Synthesis C BG01_401 PF04055 Radical SAM superfamily BG01_4011 PF08439 Oligopeptidase F BG01_4011 PF01432 Peptidase family M3 BG01_4013 PF13396 Phospholipase_D-nuclease N-terminal BG01_4013 PF13091 PLD-like domain BG01_4014 PF05389 Negative regulator of genetic competence (MecA) BG01_4015 PF03741 Integral membrane protein TerC family BG01_4016 PF03960 ArsC family BG01_4018 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG01_4019 PF01554 MatE BG01_402 PF00899 ThiF family BG01_4020 PF00005 ABC transporter BG01_4020 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BG01_4021 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BG01_4021 PF00005 ABC transporter BG01_4022 PF00528 Binding-protein-dependent transport system inner membrane component BG01_4022 PF12911 N-terminal TM domain of oligopeptide transport permease C BG01_4023 PF00528 Binding-protein-dependent transport system inner membrane component BG01_4024 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG01_4026 PF00579 tRNA synthetases class I (W and Y) BG01_4027 PF12227 Protein of unknown function (DUF3603) BG01_4028 PF10026 Predicted Zn-dependent protease (DUF2268) BG01_4029 PF02801 Beta-ketoacyl synthase, C-terminal domain BG01_4029 PF00109 Beta-ketoacyl synthase, N-terminal domain BG01_403 PF01967 MoaC family BG01_4030 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BG01_4030 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BG01_4031 PF10815 ComZ BG01_4035 PF00004 ATPase family associated with various cellular activities (AAA) BG01_4035 PF07724 AAA domain (Cdc48 subfamily) BG01_4035 PF17871 AAA lid domain BG01_4035 PF02861 Clp amino terminal domain, pathogenicity island component BG01_4035 PF10431 C-terminal, D2-small domain, of ClpB protein BG01_4036 PF14168 YjzC-like protein BG01_4039 PF12758 Protein of unknown function (DUF3813) BG01_404 PF03454 MoeA C-terminal region (domain IV) BG01_404 PF00994 Probable molybdopterin binding domain BG01_404 PF03453 MoeA N-terminal region (domain I and II) BG01_4040 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BG01_4040 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BG01_4042 PF00639 PPIC-type PPIASE domain BG01_4044 PF17783 CvfB-like winged helix domain BG01_4044 PF13509 S1 domain BG01_4045 PF17783 CvfB-like winged helix domain BG01_4045 PF13509 S1 domain BG01_4046 PF04461 Protein of unknown function (DUF520) BG01_4048 PF00128 Alpha amylase, catalytic domain BG01_4049 PF00909 Ammonium Transporter Family BG01_405 PF03205 Molybdopterin guanine dinucleotide synthesis protein B BG01_4050 PF06628 Catalase-related immune-responsive BG01_4050 PF00199 Catalase BG01_4052 PF00733 Asparagine synthase BG01_4052 PF13537 Glutamine amidotransferase domain BG01_4054 PF07457 Protein of unknown function (DUF1516) BG01_4055 PF00202 Aminotransferase class-III BG01_4057 PF01557 Fumarylacetoacetate (FAA) hydrolase family BG01_4058 PF10676 Spore germination protein gerPA/gerPF BG01_4059 PF10803 Spore germination GerPB BG01_406 PF02391 MoaE protein BG01_4060 PF10737 Spore germination protein GerPC BG01_4062 PF10970 Spore germination protein GerPE BG01_4063 PF10676 Spore germination protein gerPA/gerPF BG01_4065 PF12705 PD-(D/E)XK nuclease superfamily BG01_4065 PF00580 UvrD/REP helicase N-terminal domain BG01_4065 PF13361 UvrD-like helicase C-terminal domain BG01_4066 PF13361 UvrD-like helicase C-terminal domain BG01_4066 PF12705 PD-(D/E)XK nuclease superfamily BG01_4067 PF10502 Signal peptidase, peptidase S26 BG01_4068 PF09335 SNARE associated Golgi protein BG01_4069 PF06338 ComK protein BG01_4072 PF00313 'Cold-shock' DNA-binding domain BG01_4074 PF00463 Isocitrate lyase family BG01_4075 PF01274 Malate synthase BG01_4076 PF00395 S-layer homology domain BG01_4078 PF03424 Carbohydrate binding domain (family 17/28) BG01_4078 PF00150 Cellulase (glycosyl hydrolase family 5) BG01_4078 PF00395 S-layer homology domain BG01_4079 PF00892 EamA-like transporter family BG01_4080 PF00672 HAMP domain BG01_4080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG01_4080 PF02743 Cache domain BG01_4081 PF16491 CAAX prenyl protease N-terminal, five membrane helices BG01_4081 PF01435 Peptidase family M48 BG01_4086 PF00072 Response regulator receiver domain BG01_4086 PF00486 Transcriptional regulatory protein, C terminal BG01_4087 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_4087 PF00512 His Kinase A (phospho-acceptor) domain BG01_409 PF06800 Sugar transport protein BG01_4090 PF06445 GyrI-like small molecule binding domain BG01_4090 PF12833 Helix-turn-helix domain BG01_4091 PF04542 Sigma-70 region 2 BG01_4091 PF08281 Sigma-70, region 4 BG01_4093 PF01966 HD domain BG01_4094 PF00149 Calcineurin-like phosphoesterase BG01_4096 PF02129 X-Pro dipeptidyl-peptidase (S15 family) BG01_41 PF09648 YycH protein BG01_4101 PF05593 RHS Repeat BG01_4104 PF05593 RHS Repeat BG01_4105 PF00395 S-layer homology domain BG01_4105 PF01520 N-acetylmuramoyl-L-alanine amidase BG01_4107 PF13193 AMP-binding enzyme C-terminal domain BG01_4107 PF00501 AMP-binding enzyme BG01_4109 PF10437 Bacterial lipoate protein ligase C-terminus BG01_4109 PF03099 Biotin/lipoate A/B protein ligase family BG01_411 PF02559 CarD-like/TRCF domain BG01_4110 PF12706 Beta-lactamase superfamily domain BG01_4111 PF14149 YhfH-like protein BG01_4112 PF00356 Bacterial regulatory proteins, lacI family BG01_4118 PF00440 Bacterial regulatory proteins, tetR family BG01_4118 PF17932 Tetracyclin repressor-like, C-terminal domain BG01_4120 PF03965 Penicillinase repressor BG01_4127 PF01208 Uroporphyrinogen decarboxylase (URO-D) BG01_4128 PF00905 Penicillin binding protein transpeptidase domain BG01_4128 PF00912 Transglycosylase BG01_4129 PF03992 Antibiotic biosynthesis monooxygenase BG01_413 PF10957 Sporulation protein Cse60 BG01_4130 PF03703 Bacterial PH domain BG01_4131 PF03703 Bacterial PH domain BG01_4140 PF03703 Bacterial PH domain BG01_4142 PF03703 Bacterial PH domain BG01_4144 PF17934 Tetracyclin repressor-like, C-terminal domain BG01_4144 PF00440 Bacterial regulatory proteins, tetR family BG01_4146 PF12787 EcsC protein family BG01_4147 PF05975 Bacterial ABC transporter protein EcsB BG01_4148 PF00005 ABC transporter BG01_4149 PF01230 HIT domain BG01_415 PF08327 Activator of Hsp90 ATPase homolog 1-like protein BG01_4150 PF12732 YtxH-like protein BG01_4151 PF01047 MarR family BG01_4155 PF13538 UvrD-like helicase C-terminal domain BG01_4157 PF07690 Major Facilitator Superfamily BG01_4158 PF07690 Major Facilitator Superfamily BG01_416 PF01022 Bacterial regulatory protein, arsR family BG01_4163 PF08281 Sigma-70, region 4 BG01_4163 PF04542 Sigma-70 region 2 BG01_4166 PF16901 C-terminal domain of alpha-glycerophosphate oxidase BG01_4166 PF01266 FAD dependent oxidoreductase BG01_4167 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BG01_4167 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BG01_4168 PF00230 Major intrinsic protein BG01_4169 PF04309 Glycerol-3-phosphate responsive antiterminator BG01_417 PF07690 Major Facilitator Superfamily BG01_4173 PF08386 TAP-like protein BG01_4173 PF00561 alpha/beta hydrolase fold BG01_4175 PF18801 response regulator aspartate phosphatase H, N terminal BG01_4176 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG01_4177 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG01_4178 PF07690 Major Facilitator Superfamily BG01_4179 PF00440 Bacterial regulatory proteins, tetR family BG01_4180 PF01336 OB-fold nucleic acid binding domain BG01_4180 PF01966 HD domain BG01_4182 PF12323 Helix-turn-helix domain BG01_4182 PF07282 Putative transposase DNA-binding domain BG01_4182 PF01385 Probable transposase BG01_4183 PF13514 AAA domain BG01_4184 PF00149 Calcineurin-like phosphoesterase BG01_4187 PF11121 Protein of unknown function (DUF2639) BG01_4188 PF08240 Alcohol dehydrogenase GroES-like domain BG01_4188 PF00107 Zinc-binding dehydrogenase BG01_419 PF14667 Polysaccharide biosynthesis C-terminal domain BG01_419 PF01943 Polysaccharide biosynthesis protein BG01_4190 PF01906 Putative heavy-metal-binding BG01_4195 PF00072 Response regulator receiver domain BG01_4195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_4195 PF00497 Bacterial extracellular solute-binding proteins, family 3 BG01_4195 PF01627 Hpt domain BG01_4195 PF00512 His Kinase A (phospho-acceptor) domain BG01_4196 PF01739 CheR methyltransferase, SAM binding domain BG01_4196 PF03705 CheR methyltransferase, all-alpha domain BG01_4197 PF13426 PAS domain BG01_4197 PF07228 Stage II sporulation protein E (SpoIIE) BG01_4199 PF04545 Sigma-70, region 4 BG01_4199 PF04539 Sigma-70 region 3 BG01_4199 PF04542 Sigma-70 region 2 BG01_42 PF07435 YycH protein BG01_420 PF01479 S4 domain BG01_420 PF00849 RNA pseudouridylate synthase BG01_4200 PF13581 Histidine kinase-like ATPase domain BG01_4201 PF01740 STAS domain BG01_4204 PF05532 CsbD-like BG01_4205 PF11181 Heat induced stress protein YflT BG01_4209 PF00395 S-layer homology domain BG01_421 PF08220 DeoR-like helix-turn-helix domain BG01_4214 PF00672 HAMP domain BG01_4214 PF01966 HD domain BG01_4219 PF02082 Transcriptional regulator BG01_422 PF01546 Peptidase family M20/M25/M40 BG01_4220 PF02525 Flavodoxin-like fold BG01_4221 PF02733 Dak1 domain BG01_4223 PF02733 Dak1 domain BG01_4227 PF01066 CDP-alcohol phosphatidyltransferase BG01_423 PF01546 Peptidase family M20/M25/M40 BG01_4231 PF18665 Tetracyclin repressor-like, C-terminal domain BG01_4231 PF00440 Bacterial regulatory proteins, tetR family BG01_4232 PF07993 Male sterility protein BG01_4232 PF00550 Phosphopantetheine attachment site BG01_424 PF02834 LigT like Phosphoesterase BG01_4242 PF07690 Major Facilitator Superfamily BG01_4245 PF01925 Sulfite exporter TauE/SafE BG01_425 PF17999 Pullulanase N1-terminal domain BG01_425 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BG01_425 PF00128 Alpha amylase, catalytic domain BG01_4250 PF03796 DnaB-like helicase C terminal domain BG01_4250 PF00772 DnaB-like helicase N terminal domain BG01_4253 PF13411 MerR HTH family regulatory protein BG01_4253 PF06445 GyrI-like small molecule binding domain BG01_4257 PF02342 TerD domain BG01_4258 PF03401 Tripartite tricarboxylate transporter family receptor BG01_4259 PF00072 Response regulator receiver domain BG01_4259 PF08279 HTH domain BG01_4259 PF12431 Transcriptional regulator BG01_426 PF01636 Phosphotransferase enzyme family BG01_4260 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BG01_4260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_4261 PF00083 Sugar (and other) transporter BG01_4267 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BG01_4267 PF00005 ABC transporter BG01_4268 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BG01_4268 PF00005 ABC transporter BG01_4269 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BG01_4269 PF00005 ABC transporter BG01_427 PF14165 YtzH-like protein BG01_4270 PF12911 N-terminal TM domain of oligopeptide transport permease C BG01_4270 PF00528 Binding-protein-dependent transport system inner membrane component BG01_4271 PF00528 Binding-protein-dependent transport system inner membrane component BG01_4272 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG01_4276 PF18593 CdiI immunity protein BG01_4277 PF02423 Ornithine cyclodeaminase/mu-crystallin family BG01_4278 PF05544 Proline racemase BG01_4279 PF11121 Protein of unknown function (DUF2639) BG01_428 PF02390 Putative methyltransferase BG01_4282 PF01520 N-acetylmuramoyl-L-alanine amidase BG01_4282 PF00395 S-layer homology domain BG01_4283 PF05343 M42 glutamyl aminopeptidase BG01_4286 PF00378 Enoyl-CoA hydratase/isomerase BG01_4289 PF03062 MBOAT, membrane-bound O-acyltransferase family BG01_429 PF00753 Metallo-beta-lactamase superfamily BG01_4290 PF03062 MBOAT, membrane-bound O-acyltransferase family BG01_4292 PF00395 S-layer homology domain BG01_4293 PF02368 Bacterial Ig-like domain (group 2) BG01_4293 PF13205 Bacterial Ig-like domain BG01_4293 PF00395 S-layer homology domain BG01_4295 PF14667 Polysaccharide biosynthesis C-terminal domain BG01_4295 PF01943 Polysaccharide biosynthesis protein BG01_4296 PF07517 SecA DEAD-like domain BG01_4296 PF01043 SecA preprotein cross-linking domain BG01_4296 PF07516 SecA Wing and Scaffold domain BG01_43 PF13426 PAS domain BG01_43 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_43 PF00512 His Kinase A (phospho-acceptor) domain BG01_43 PF00672 HAMP domain BG01_4300 PF00916 Sulfate permease family BG01_4300 PF01740 STAS domain BG01_4302 PF00501 AMP-binding enzyme BG01_4302 PF13193 AMP-binding enzyme C-terminal domain BG01_4303 PF04055 Radical SAM superfamily BG01_4305 PF01471 Putative peptidoglycan binding domain BG01_4305 PF01476 LysM domain BG01_4305 PF01510 N-acetylmuramoyl-L-alanine amidase BG01_4308 PF02245 Methylpurine-DNA glycosylase (MPG) BG01_431 PF05343 M42 glutamyl aminopeptidase BG01_4310 PF03306 Alpha-acetolactate decarboxylase BG01_4311 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BG01_4311 PF00205 Thiamine pyrophosphate enzyme, central domain BG01_4311 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BG01_4314 PF06133 Control of competence regulator ComK, YlbF/YmcA BG01_4315 PF04286 Protein of unknown function (DUF445) BG01_4317 PF14398 YheC/D like ATP-grasp BG01_4319 PF00269 Small, acid-soluble spore proteins, alpha/beta type BG01_432 PF01931 Protein of unknown function DUF84 BG01_4320 PF00005 ABC transporter BG01_4321 PF00528 Binding-protein-dependent transport system inner membrane component BG01_4322 PF00497 Bacterial extracellular solute-binding proteins, family 3 BG01_4323 PF00664 ABC transporter transmembrane region BG01_4323 PF00005 ABC transporter BG01_4324 PF00005 ABC transporter BG01_4324 PF00664 ABC transporter transmembrane region BG01_4325 PF00664 ABC transporter transmembrane region BG01_4325 PF00005 ABC transporter BG01_4326 PF00171 Aldehyde dehydrogenase family BG01_4328 PF01177 Asp/Glu/Hydantoin racemase BG01_4329 PF13520 Amino acid permease BG01_433 PF00085 Thioredoxin BG01_4331 PF18011 C-terminal domain found in long catalases BG01_4331 PF06628 Catalase-related immune-responsive BG01_4331 PF00199 Catalase BG01_4332 PF01965 DJ-1/PfpI family BG01_4334 PF07690 Major Facilitator Superfamily BG01_4335 PF12793 Sugar transport-related sRNA regulator N-term BG01_4335 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG01_4336 PF02525 Flavodoxin-like fold BG01_4338 PF01638 HxlR-like helix-turn-helix BG01_4339 PF07690 Major Facilitator Superfamily BG01_434 PF07285 Protein of unknown function (DUF1444) BG01_4340 PF17934 Tetracyclin repressor-like, C-terminal domain BG01_4340 PF00440 Bacterial regulatory proteins, tetR family BG01_4341 PF00893 Small Multidrug Resistance protein BG01_4342 PF00893 Small Multidrug Resistance protein BG01_4344 PF01037 Lrp/AsnC ligand binding domain BG01_4345 PF00892 EamA-like transporter family BG01_4348 PF07681 DoxX BG01_435 PF01588 Putative tRNA binding domain BG01_435 PF14794 Domain of unknown function (DUF4479) BG01_4350 PF02378 Phosphotransferase system, EIIC BG01_4350 PF00367 phosphotransferase system, EIIB BG01_4351 PF01380 SIS domain BG01_4352 PF01418 Helix-turn-helix domain, rpiR family BG01_4352 PF01380 SIS domain BG01_4354 PF00999 Sodium/hydrogen exchanger family BG01_4355 PF13520 Amino acid permease BG01_4361 PF09335 SNARE associated Golgi protein BG01_4363 PF02735 Ku70/Ku80 beta-barrel domain BG01_4366 PF11007 Spore coat associated protein JA (CotJA) BG01_4367 PF12652 CotJB protein BG01_4368 PF05067 Manganese containing catalase BG01_4369 PF05525 Branched-chain amino acid transport protein BG01_437 PF09397 Ftsk gamma domain BG01_437 PF01580 FtsK/SpoIIIE family BG01_437 PF17854 FtsK alpha domain BG01_4372 PF09529 Integral membrane protein (intg_mem_TP0381) BG01_4374 PF00005 ABC transporter BG01_4375 PF12704 MacB-like periplasmic core domain BG01_4375 PF02687 FtsX-like permease family BG01_4376 PF06725 3D domain BG01_4376 PF01476 LysM domain BG01_4379 PF02378 Phosphotransferase system, EIIC BG01_4380 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BG01_4381 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BG01_4382 PF05043 Mga helix-turn-helix domain BG01_4382 PF08279 HTH domain BG01_4382 PF00874 PRD domain BG01_4382 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BG01_4384 PF07690 Major Facilitator Superfamily BG01_4385 PF02690 Na+/Pi-cotransporter BG01_4386 PF08240 Alcohol dehydrogenase GroES-like domain BG01_4386 PF00107 Zinc-binding dehydrogenase BG01_4387 PF03816 Cell envelope-related transcriptional attenuator domain BG01_4389 PF01925 Sulfite exporter TauE/SafE BG01_439 PF01225 Mur ligase family, catalytic domain BG01_439 PF02875 Mur ligase family, glutamate ligase domain BG01_439 PF08245 Mur ligase middle domain BG01_4390 PF13686 DsrE/DsrF/DrsH-like family BG01_4392 PF00581 Rhodanese-like domain BG01_4394 PF01206 Sulfurtransferase TusA BG01_4395 PF00581 Rhodanese-like domain BG01_4395 PF00753 Metallo-beta-lactamase superfamily BG01_4396 PF01206 Sulfurtransferase TusA BG01_4396 PF00581 Rhodanese-like domain BG01_4397 PF02583 Metal-sensitive transcriptional repressor BG01_4398 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BG01_4398 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG01_44 PF00072 Response regulator receiver domain BG01_44 PF00486 Transcriptional regulatory protein, C terminal BG01_440 PF13302 Acetyltransferase (GNAT) domain BG01_4403 PF04293 SpoVR like protein BG01_4404 PF00881 Nitroreductase family BG01_4407 PF03323 Bacillus/Clostridium GerA spore germination protein BG01_4409 PF03845 Spore germination protein BG01_4411 PF14148 YhdB-like protein BG01_4412 PF02600 Disulfide bond formation protein DsbB BG01_4413 PF00085 Thioredoxin BG01_4415 PF00356 Bacterial regulatory proteins, lacI family BG01_4415 PF13407 Periplasmic binding protein domain BG01_4416 PF02378 Phosphotransferase system, EIIC BG01_4416 PF00367 phosphotransferase system, EIIB BG01_4417 PF00251 Glycosyl hydrolases family 32 N-terminal domain BG01_4417 PF08244 Glycosyl hydrolases family 32 C terminal BG01_4418 PF00294 pfkB family carbohydrate kinase BG01_4423 PF00860 Permease family BG01_4426 PF01047 MarR family BG01_4427 PF07690 Major Facilitator Superfamily BG01_4428 PF02702 Osmosensitive K+ channel His kinase sensor domain BG01_4429 PF02669 K+-transporting ATPase, c chain BG01_4431 PF03814 Potassium-transporting ATPase A subunit BG01_4435 PF08543 Phosphomethylpyrimidine kinase BG01_4436 PF00899 ThiF family BG01_4437 PF05690 Thiazole biosynthesis protein ThiG BG01_4438 PF02597 ThiS family BG01_4439 PF01266 FAD dependent oxidoreductase BG01_444 PF02073 Thermophilic metalloprotease (M29) BG01_4440 PF02581 Thiamine monophosphate synthase BG01_4441 PF09084 NMT1/THI5 like BG01_4442 PF00528 Binding-protein-dependent transport system inner membrane component BG01_4443 PF00005 ABC transporter BG01_4444 PF03070 TENA/THI-4/PQQC family BG01_4445 PF08239 Bacterial SH3 domain BG01_4445 PF00246 Zinc carboxypeptidase BG01_4448 PF00571 CBS domain BG01_446 PF11009 Protein of unknown function (DUF2847) BG01_447 PF07537 CamS sex pheromone cAM373 precursor BG01_4473 PF00873 AcrB/AcrD/AcrF family BG01_4475 PF00528 Binding-protein-dependent transport system inner membrane component BG01_4476 PF00528 Binding-protein-dependent transport system inner membrane component BG01_4477 PF12849 PBP superfamily domain BG01_4478 PF17910 FeoB cytosolic helical domain BG01_4478 PF04023 FeoA domain BG01_4478 PF07664 Ferrous iron transport protein B C terminus BG01_4478 PF07670 Nucleoside recognition BG01_4478 PF02421 Ferrous iron transport protein B BG01_4479 PF07664 Ferrous iron transport protein B C terminus BG01_4479 PF17910 FeoB cytosolic helical domain BG01_4479 PF02421 Ferrous iron transport protein B BG01_4479 PF07670 Nucleoside recognition BG01_448 PF00356 Bacterial regulatory proteins, lacI family BG01_4480 PF07670 Nucleoside recognition BG01_4480 PF02421 Ferrous iron transport protein B BG01_4480 PF17910 FeoB cytosolic helical domain BG01_4480 PF07664 Ferrous iron transport protein B C terminus BG01_4481 PF05504 Spore germination B3/ GerAC like, C-terminal BG01_4482 PF03845 Spore germination protein BG01_4483 PF03323 Bacillus/Clostridium GerA spore germination protein BG01_4484 PF00474 Sodium:solute symporter family BG01_4485 PF11755 Protein of unknown function (DUF3311) BG01_4486 PF01546 Peptidase family M20/M25/M40 BG01_4486 PF07687 Peptidase dimerisation domain BG01_4487 PF13529 Peptidase_C39 like family BG01_4488 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BG01_4489 PF00115 Cytochrome C and Quinol oxidase polypeptide I BG01_4490 PF00510 Cytochrome c oxidase subunit III BG01_4492 PF00999 Sodium/hydrogen exchanger family BG01_4492 PF02254 TrkA-N domain BG01_4492 PF02080 TrkA-C domain BG01_4497 PF00860 Permease family BG01_4498 PF00324 Amino acid permease BG01_4501 PF05525 Branched-chain amino acid transport protein BG01_4502 PF00854 POT family BG01_4503 PF04203 Sortase domain BG01_4505 PF01381 Helix-turn-helix BG01_4506 PF06725 3D domain BG01_4506 PF01476 LysM domain BG01_4507 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG01_4507 PF02743 Cache domain BG01_4507 PF00672 HAMP domain BG01_4508 PF02673 Bacitracin resistance protein BacA BG01_4513 PF03372 Endonuclease/Exonuclease/phosphatase family BG01_4514 PF00882 Zinc dependent phospholipase C BG01_4516 PF08240 Alcohol dehydrogenase GroES-like domain BG01_4516 PF00107 Zinc-binding dehydrogenase BG01_4519 PF05547 Immune inhibitor A peptidase M6 BG01_4520 PF00923 Transaldolase/Fructose-6-phosphate aldolase BG01_4521 PF13407 Periplasmic binding protein domain BG01_4522 PF02653 Branched-chain amino acid transport system / permease component BG01_4523 PF00005 ABC transporter BG01_4524 PF05025 RbsD / FucU transport protein family BG01_4525 PF00294 pfkB family carbohydrate kinase BG01_4526 PF00356 Bacterial regulatory proteins, lacI family BG01_4527 PF07690 Major Facilitator Superfamily BG01_4528 PF07690 Major Facilitator Superfamily BG01_4529 PF01047 MarR family BG01_453 PF01741 Large-conductance mechanosensitive channel, MscL BG01_4530 PF07690 Major Facilitator Superfamily BG01_4531 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BG01_4531 PF00005 ABC transporter BG01_4532 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BG01_4532 PF00005 ABC transporter BG01_4533 PF00528 Binding-protein-dependent transport system inner membrane component BG01_4534 PF00528 Binding-protein-dependent transport system inner membrane component BG01_4535 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG01_4537 PF00582 Universal stress protein family BG01_4538 PF01740 STAS domain BG01_4538 PF00916 Sulfate permease family BG01_454 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BG01_4540 PF00486 Transcriptional regulatory protein, C terminal BG01_4540 PF00072 Response regulator receiver domain BG01_4541 PF00672 HAMP domain BG01_4541 PF00512 His Kinase A (phospho-acceptor) domain BG01_4541 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_4541 PF18698 Histidine kinase sensor domain BG01_4541 PF00989 PAS fold BG01_4542 PF01872 RibD C-terminal domain BG01_4543 PF13280 WYL domain BG01_4543 PF08279 HTH domain BG01_4548 PF00324 Amino acid permease BG01_4549 PF00528 Binding-protein-dependent transport system inner membrane component BG01_455 PF12796 Ankyrin repeats (3 copies) BG01_4550 PF00528 Binding-protein-dependent transport system inner membrane component BG01_4551 PF00497 Bacterial extracellular solute-binding proteins, family 3 BG01_4552 PF00005 ABC transporter BG01_4553 PF01235 Sodium:alanine symporter family BG01_4554 PF01636 Phosphotransferase enzyme family BG01_4556 PF03323 Bacillus/Clostridium GerA spore germination protein BG01_4559 PF00128 Alpha amylase, catalytic domain BG01_4559 PF16657 Maltogenic Amylase, C-terminal domain BG01_456 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_456 PF00672 HAMP domain BG01_456 PF00512 His Kinase A (phospho-acceptor) domain BG01_456 PF13426 PAS domain BG01_4560 PF02378 Phosphotransferase system, EIIC BG01_4560 PF00367 phosphotransferase system, EIIB BG01_4561 PF00392 Bacterial regulatory proteins, gntR family BG01_4561 PF07702 UTRA domain BG01_4562 PF13520 Amino acid permease BG01_4563 PF00563 EAL domain BG01_4563 PF00990 Diguanylate cyclase, GGDEF domain BG01_4563 PF03707 Bacterial signalling protein N terminal repeat BG01_4566 PF13091 PLD-like domain BG01_4566 PF13396 Phospholipase_D-nuclease N-terminal BG01_4567 PF07728 AAA domain (dynein-related subfamily) BG01_4568 PF00092 von Willebrand factor type A domain BG01_4569 PF13344 Haloacid dehalogenase-like hydrolase BG01_4569 PF00293 NUDIX domain BG01_457 PF00072 Response regulator receiver domain BG01_457 PF00486 Transcriptional regulatory protein, C terminal BG01_4570 PF01370 NAD dependent epimerase/dehydratase family BG01_4571 PF00155 Aminotransferase class I and II BG01_4572 PF08241 Methyltransferase domain BG01_4573 PF00005 ABC transporter BG01_4574 PF01032 FecCD transport family BG01_4575 PF01032 FecCD transport family BG01_4576 PF01497 Periplasmic binding protein BG01_4577 PF00854 POT family BG01_4578 PF08141 Small acid-soluble spore protein H family BG01_4579 PF01022 Bacterial regulatory protein, arsR family BG01_4580 PF02652 L-lactate permease BG01_4581 PF00206 Lyase BG01_4581 PF10415 Fumarase C C-terminus BG01_4582 PF00571 CBS domain BG01_4582 PF01595 Cyclin M transmembrane N-terminal domain BG01_4582 PF03471 Transporter associated domain BG01_4583 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG01_4584 PF07662 Na+ dependent nucleoside transporter C-terminus BG01_4584 PF01773 Na+ dependent nucleoside transporter N-terminus BG01_4585 PF03816 Cell envelope-related transcriptional attenuator domain BG01_4586 PF04294 VanW like protein BG01_459 PF00850 Histone deacetylase domain BG01_4590 PF07504 Fungalysin/Thermolysin Propeptide Motif BG01_4590 PF02868 Thermolysin metallopeptidase, alpha-helical domain BG01_4590 PF01447 Thermolysin metallopeptidase, catalytic domain BG01_4590 PF03413 Peptidase propeptide and YPEB domain BG01_4593 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BG01_4593 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain BG01_4593 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain BG01_4594 PF00403 Heavy-metal-associated domain BG01_4595 PF01022 Bacterial regulatory protein, arsR family BG01_4596 PF13520 Amino acid permease BG01_4597 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BG01_4597 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BG01_460 PF00571 CBS domain BG01_4601 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BG01_4601 PF01568 Molydopterin dinucleotide binding domain BG01_4601 PF00384 Molybdopterin oxidoreductase BG01_4601 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BG01_4601 PF00037 4Fe-4S binding domain BG01_4602 PF02634 FdhD/NarQ family BG01_4603 PF00583 Acetyltransferase (GNAT) family BG01_4603 PF13508 Acetyltransferase (GNAT) domain BG01_4605 PF00072 Response regulator receiver domain BG01_4605 PF00486 Transcriptional regulatory protein, C terminal BG01_4606 PF00512 His Kinase A (phospho-acceptor) domain BG01_4606 PF00989 PAS fold BG01_4606 PF00672 HAMP domain BG01_4606 PF18698 Histidine kinase sensor domain BG01_4606 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_4608 PF00155 Aminotransferase class I and II BG01_4608 PF00392 Bacterial regulatory proteins, gntR family BG01_4609 PF00892 EamA-like transporter family BG01_461 PF00583 Acetyltransferase (GNAT) family BG01_4611 PF03949 Malic enzyme, NAD binding domain BG01_4611 PF00390 Malic enzyme, N-terminal domain BG01_4612 PF03390 2-hydroxycarboxylate transporter family BG01_4613 PF00072 Response regulator receiver domain BG01_4614 PF17203 Single cache domain 3 BG01_4614 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BG01_4614 PF00989 PAS fold BG01_4614 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_4615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG01_4615 PF00672 HAMP domain BG01_4615 PF02743 Cache domain BG01_4616 PF13529 Peptidase_C39 like family BG01_4618 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_4618 PF00512 His Kinase A (phospho-acceptor) domain BG01_4619 PF00072 Response regulator receiver domain BG01_4619 PF00486 Transcriptional regulatory protein, C terminal BG01_462 PF00501 AMP-binding enzyme BG01_462 PF13193 AMP-binding enzyme C-terminal domain BG01_4620 PF00149 Calcineurin-like phosphoesterase BG01_4621 PF13416 Bacterial extracellular solute-binding protein BG01_4622 PF00528 Binding-protein-dependent transport system inner membrane component BG01_4623 PF00528 Binding-protein-dependent transport system inner membrane component BG01_4624 PF00005 ABC transporter BG01_4624 PF17912 MalK OB fold domain BG01_4625 PF04309 Glycerol-3-phosphate responsive antiterminator BG01_4629 PF03600 Citrate transporter BG01_4632 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BG01_4632 PF17203 Single cache domain 3 BG01_4632 PF00989 PAS fold BG01_4632 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_4633 PF00672 HAMP domain BG01_4633 PF02743 Cache domain BG01_4633 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG01_4634 PF15975 Flotillin BG01_4634 PF01145 SPFH domain / Band 7 family BG01_4636 PF18496 Collagenase G catalytic helper subdomain BG01_4636 PF08453 Peptidase family M9 N-terminal BG01_4636 PF01752 Collagenase BG01_4637 PF02028 BCCT, betaine/carnitine/choline family transporter BG01_464 PF04542 Sigma-70 region 2 BG01_464 PF08281 Sigma-70, region 4 BG01_4640 PF04285 Protein of unknown function (DUF444) BG01_4641 PF08298 PrkA AAA domain BG01_4641 PF06798 PrkA serine protein kinase C-terminal domain BG01_4643 PF00990 Diguanylate cyclase, GGDEF domain BG01_4643 PF03707 Bacterial signalling protein N terminal repeat BG01_4643 PF00563 EAL domain BG01_4644 PF00588 SpoU rRNA Methylase family BG01_4645 PF12671 Putative amidase domain BG01_4646 PF08331 Domain of unknown function (DUF1730) BG01_4648 PF13462 Thioredoxin BG01_4649 PF00912 Transglycosylase BG01_4649 PF00905 Penicillin binding protein transpeptidase domain BG01_4650 PF00293 NUDIX domain BG01_4650 PF13344 Haloacid dehalogenase-like hydrolase BG01_4651 PF01709 Transcriptional regulator BG01_466 PF01479 S4 domain BG01_466 PF00579 tRNA synthetases class I (W and Y) BG01_4675 PF11023 Zinc-ribbon containing domain BG01_4676 PF01475 Ferric uptake regulator family BG01_4677 PF00578 AhpC/TSA family BG01_4678 PF07885 Ion channel BG01_4681 PF00005 ABC transporter BG01_4682 PF00202 Aminotransferase class-III BG01_4683 PF00310 Glutamine amidotransferases class-II BG01_4683 PF04898 Glutamate synthase central domain BG01_4683 PF01645 Conserved region in glutamate synthase BG01_4683 PF01493 GXGXG motif BG01_4684 PF06081 Aromatic acid exporter family member 1 BG01_4685 PF00005 ABC transporter BG01_4685 PF00664 ABC transporter transmembrane region BG01_4686 PF04167 Protein of unknown function (DUF402) BG01_4687 PF14182 YgaB-like protein BG01_4688 PF04259 Small, acid-soluble spore protein, gamma-type BG01_469 PF00163 Ribosomal protein S4/S9 N-terminal domain BG01_469 PF01479 S4 domain BG01_4690 PF14815 NUDIX domain BG01_4690 PF00730 HhH-GPD superfamily base excision DNA repair protein BG01_4691 PF04307 LexA-binding, inner membrane-associated putative hydrolase BG01_4692 PF14043 WVELL protein BG01_4693 PF08176 Small acid-soluble spore protein K family BG01_4696 PF02631 RecX family BG01_4697 PF08338 Domain of unknown function (DUF1731) BG01_4697 PF01370 NAD dependent epimerase/dehydratase family BG01_4698 PF01979 Amidohydrolase family BG01_470 PF01053 Cys/Met metabolism PLP-dependent enzyme BG01_4701 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase BG01_4701 PF04101 Glycosyltransferase family 28 C-terminal domain BG01_4702 PF04055 Radical SAM superfamily BG01_4703 PF01228 Glycine radical BG01_4703 PF02901 Pyruvate formate lyase-like BG01_4704 PF00535 Glycosyl transferase family 2 BG01_4705 PF02911 Formyl transferase, C-terminal domain BG01_4705 PF01370 NAD dependent epimerase/dehydratase family BG01_4705 PF00551 Formyl transferase BG01_4706 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BG01_4706 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BG01_4706 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BG01_4707 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BG01_4707 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BG01_4707 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BG01_4708 PF00535 Glycosyl transferase family 2 BG01_471 PF13185 GAF domain BG01_4711 PF00144 Beta-lactamase BG01_4712 PF02378 Phosphotransferase system, EIIC BG01_4712 PF00367 phosphotransferase system, EIIB BG01_4713 PF04960 Glutaminase BG01_4718 PF01546 Peptidase family M20/M25/M40 BG01_4718 PF07687 Peptidase dimerisation domain BG01_4719 PF00324 Amino acid permease BG01_472 PF00440 Bacterial regulatory proteins, tetR family BG01_4721 PF13426 PAS domain BG01_4721 PF00158 Sigma-54 interaction domain BG01_4721 PF02954 Bacterial regulatory protein, Fis family BG01_4723 PF01416 tRNA pseudouridine synthase BG01_473 PF00440 Bacterial regulatory proteins, tetR family BG01_474 PF00892 EamA-like transporter family BG01_475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG01_475 PF03466 LysR substrate binding domain BG01_476 PF06160 Septation ring formation regulator, EzrA BG01_477 PF00266 Aminotransferase class-V BG01_4770 PF07319 Primosomal protein DnaI N-terminus BG01_4770 PF01695 IstB-like ATP binding protein BG01_4777 PF01381 Helix-turn-helix BG01_478 PF02926 THUMP domain BG01_478 PF02568 Thiamine biosynthesis protein (ThiI) BG01_4781 PF14659 Phage integrase, N-terminal SAM-like domain BG01_4781 PF00589 Phage integrase family BG01_4782 PF01938 TRAM domain BG01_4782 PF05958 tRNA (Uracil-5-)-methyltransferase BG01_4783 PF00730 HhH-GPD superfamily base excision DNA repair protein BG01_4785 PF01522 Polysaccharide deacetylase BG01_4786 PF05683 Fumarase C-terminus BG01_4786 PF05681 Fumarate hydratase (Fumerase) BG01_4788 PF08756 YfkB-like domain BG01_4788 PF04055 Radical SAM superfamily BG01_4789 PF14167 YfkD-like protein BG01_479 PF00269 Small, acid-soluble spore proteins, alpha/beta type BG01_4790 PF01699 Sodium/calcium exchanger protein BG01_4791 PF16242 Pyridoxamine 5'-phosphate oxidase like BG01_4794 PF09335 SNARE associated Golgi protein BG01_4796 PF10502 Signal peptidase, peptidase S26 BG01_4797 PF10502 Signal peptidase, peptidase S26 BG01_4799 PF00892 EamA-like transporter family BG01_4801 PF03631 Virulence factor BrkB BG01_4803 PF01451 Low molecular weight phosphotyrosine protein phosphatase BG01_4804 PF06569 Protein of unknown function (DUF1128) BG01_4805 PF00690 Cation transporter/ATPase, N-terminus BG01_4805 PF00689 Cation transporting ATPase, C-terminus BG01_4806 PF05816 Toxic anion resistance protein (TelA) BG01_4807 PF14266 Putative component of 'biosynthetic module' BG01_4808 PF03741 Integral membrane protein TerC family BG01_4809 PF02342 TerD domain BG01_4810 PF02342 TerD domain BG01_4811 PF02342 TerD domain BG01_4812 PF00480 ROK family BG01_4814 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BG01_4814 PF09180 Prolyl-tRNA synthetase, C-terminal BG01_4814 PF03129 Anticodon binding domain BG01_4817 PF11700 Vacuole effluxer Atg22 like BG01_4821 PF00440 Bacterial regulatory proteins, tetR family BG01_4821 PF08360 QacR-like protein, C-terminal region BG01_4825 PF00041 Fibronectin type III domain BG01_4825 PF00704 Glycosyl hydrolases family 18 BG01_4826 PF00005 ABC transporter BG01_4826 PF12848 ABC transporter BG01_4827 PF00005 ABC transporter BG01_4829 PF00528 Binding-protein-dependent transport system inner membrane component BG01_483 PF07969 Amidohydrolase family BG01_4830 PF01910 Thiamine-binding protein BG01_4831 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG01_4831 PF00672 HAMP domain BG01_4832 PF03605 Anaerobic c4-dicarboxylate membrane transporter BG01_4833 PF02581 Thiamine monophosphate synthase BG01_4834 PF02110 Hydroxyethylthiazole kinase family BG01_4835 PF01131 DNA topoisomerase BG01_4835 PF01751 Toprim domain BG01_4836 PF01061 ABC-2 type transporter BG01_4837 PF03372 Endonuclease/Exonuclease/phosphatase family BG01_4838 PF00367 phosphotransferase system, EIIB BG01_4838 PF02378 Phosphotransferase system, EIIC BG01_4838 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BG01_4839 PF16657 Maltogenic Amylase, C-terminal domain BG01_4839 PF00128 Alpha amylase, catalytic domain BG01_484 PF01513 ATP-NAD kinase BG01_4840 PF12729 Four helix bundle sensory module for signal transduction BG01_4840 PF00672 HAMP domain BG01_4840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG01_4841 PF12729 Four helix bundle sensory module for signal transduction BG01_4841 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG01_4841 PF00672 HAMP domain BG01_4842 PF00005 ABC transporter BG01_4843 PF00497 Bacterial extracellular solute-binding proteins, family 3 BG01_4844 PF00528 Binding-protein-dependent transport system inner membrane component BG01_4846 PF01266 FAD dependent oxidoreductase BG01_4846 PF00355 Rieske [2Fe-2S] domain BG01_4847 PF07690 Major Facilitator Superfamily BG01_4848 PF10127 RNA repair pathway DNA polymerase beta family BG01_4852 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_4852 PF00512 His Kinase A (phospho-acceptor) domain BG01_4852 PF13426 PAS domain BG01_4852 PF13188 PAS domain BG01_4852 PF00989 PAS fold BG01_4858 PF12728 Helix-turn-helix domain BG01_486 PF09579 Sporulation protein YtfJ (Spore_YtfJ) BG01_4860 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG01_4861 PF01497 Periplasmic binding protein BG01_4862 PF01032 FecCD transport family BG01_4863 PF01032 FecCD transport family BG01_4864 PF00596 Class II Aldolase and Adducin N-terminal domain BG01_4866 PF01636 Phosphotransferase enzyme family BG01_4867 PF00578 AhpC/TSA family BG01_4868 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG01_4868 PF13192 Thioredoxin domain BG01_487 PF08534 Redoxin BG01_4870 PF01546 Peptidase family M20/M25/M40 BG01_4870 PF07687 Peptidase dimerisation domain BG01_4873 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BG01_4873 PF13378 Enolase C-terminal domain-like BG01_4876 PF07308 Protein of unknown function (DUF1456) BG01_4878 PF01207 Dihydrouridine synthase (Dus) BG01_4879 PF05958 tRNA (Uracil-5-)-methyltransferase BG01_4879 PF01938 TRAM domain BG01_4879 PF02475 Met-10+ like-protein BG01_488 PF02384 N-6 DNA Methylase BG01_4880 PF07670 Nucleoside recognition BG01_4880 PF07662 Na+ dependent nucleoside transporter C-terminus BG01_4880 PF01773 Na+ dependent nucleoside transporter N-terminus BG01_4883 PF02073 Thermophilic metalloprotease (M29) BG01_4884 PF00893 Small Multidrug Resistance protein BG01_4885 PF00171 Aldehyde dehydrogenase family BG01_4886 PF00158 Sigma-54 interaction domain BG01_4887 PF00202 Aminotransferase class-III BG01_4888 PF13419 Haloacid dehalogenase-like hydrolase BG01_4889 PF00781 Diacylglycerol kinase catalytic domain BG01_489 PF00871 Acetokinase family BG01_4890 PF02934 GatB/GatE catalytic domain BG01_4890 PF02637 GatB domain BG01_4891 PF01425 Amidase BG01_4892 PF02686 Glu-tRNAGln amidotransferase C subunit BG01_4894 PF01047 MarR family BG01_4895 PF17886 HSP20-like domain found in ArsA BG01_4895 PF02374 Anion-transporting ATPase BG01_4896 PF02374 Anion-transporting ATPase BG01_4896 PF17886 HSP20-like domain found in ArsA BG01_4899 PF03180 NLPA lipoprotein BG01_49 PF00709 Adenylosuccinate synthetase BG01_4900 PF00528 Binding-protein-dependent transport system inner membrane component BG01_4901 PF00005 ABC transporter BG01_4901 PF09383 NIL domain BG01_4902 PF00857 Isochorismatase family BG01_4904 PF00171 Aldehyde dehydrogenase family BG01_4905 PF01925 Sulfite exporter TauE/SafE BG01_4906 PF07537 CamS sex pheromone cAM373 precursor BG01_4907 PF01653 NAD-dependent DNA ligase adenylation domain BG01_4907 PF00533 BRCA1 C Terminus (BRCT) domain BG01_4907 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BG01_4907 PF12826 Helix-hairpin-helix motif BG01_4907 PF03120 NAD-dependent DNA ligase OB-fold domain BG01_4908 PF00580 UvrD/REP helicase N-terminal domain BG01_4908 PF13361 UvrD-like helicase C-terminal domain BG01_4909 PF01884 PcrB family BG01_4913 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BG01_4913 PF02843 Phosphoribosylglycinamide synthetase, C domain BG01_4913 PF02844 Phosphoribosylglycinamide synthetase, N domain BG01_4914 PF02142 MGS-like domain BG01_4914 PF01808 AICARFT/IMPCHase bienzyme BG01_4915 PF00551 Formyl transferase BG01_4916 PF00586 AIR synthase related protein, N-terminal domain BG01_4916 PF02769 AIR synthase related protein, C-terminal domain BG01_4917 PF00156 Phosphoribosyl transferase domain BG01_4918 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BG01_4918 PF00586 AIR synthase related protein, N-terminal domain BG01_4918 PF02769 AIR synthase related protein, C-terminal domain BG01_492 PF12787 EcsC protein family BG01_4920 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase BG01_4921 PF01259 SAICAR synthetase BG01_4922 PF00206 Lyase BG01_4922 PF10397 Adenylosuccinate lyase C-terminus BG01_4923 PF02222 ATP-grasp domain BG01_4923 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BG01_4924 PF00731 AIR carboxylase BG01_4929 PF00486 Transcriptional regulatory protein, C terminal BG01_4929 PF00072 Response regulator receiver domain BG01_493 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BG01_493 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BG01_4930 PF00512 His Kinase A (phospho-acceptor) domain BG01_4930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_4931 PF00005 ABC transporter BG01_4933 PF02673 Bacitracin resistance protein BacA BG01_4938 PF00512 His Kinase A (phospho-acceptor) domain BG01_4938 PF00989 PAS fold BG01_4938 PF16736 Single Cache-like BG01_4938 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_4939 PF00072 Response regulator receiver domain BG01_4939 PF00486 Transcriptional regulatory protein, C terminal BG01_4940 PF00860 Permease family BG01_4941 PF02540 NAD synthase BG01_4941 PF00958 GMP synthase C terminal domain BG01_4941 PF00117 Glutamine amidotransferase class-I BG01_4942 PF00118 TCP-1/cpn60 chaperonin family BG01_4943 PF00166 Chaperonin 10 Kd subunit BG01_4944 PF02517 CPBP intramembrane metalloprotease BG01_4946 PF02629 CoA binding domain BG01_4946 PF06971 Putative DNA-binding protein N-terminus BG01_4947 PF12848 ABC transporter BG01_4947 PF16326 ABC transporter C-terminal domain BG01_4947 PF00005 ABC transporter BG01_4948 PF00814 Glycoprotease family BG01_4949 PF00583 Acetyltransferase (GNAT) family BG01_4950 PF00814 Glycoprotease family BG01_4951 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BG01_4969 PF10263 SprT-like family BG01_4969 PF17283 SprT-like zinc ribbon domain BG01_497 PF00764 Arginosuccinate synthase BG01_4970 PF00575 S1 RNA binding domain BG01_4970 PF16921 Tex protein YqgF-like domain BG01_4970 PF17674 HHH domain BG01_4970 PF09371 Tex-like protein N-terminal domain BG01_4971 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system BG01_4972 PF01402 Ribbon-helix-helix protein, copG family BG01_4973 PF00842 Alanine racemase, C-terminal domain BG01_4973 PF01168 Alanine racemase, N-terminal domain BG01_4975 PF01648 4'-phosphopantetheinyl transferase superfamily BG01_4976 PF03851 UV-endonuclease UvdE BG01_4977 PF01694 Rhomboid family BG01_4978 PF00270 DEAD/DEAH box helicase BG01_4978 PF00271 Helicase conserved C-terminal domain BG01_4979 PF01225 Mur ligase family, catalytic domain BG01_4979 PF02875 Mur ligase family, glutamate ligase domain BG01_4979 PF08245 Mur ligase middle domain BG01_498 PF00206 Lyase BG01_498 PF14698 Argininosuccinate lyase C-terminal BG01_4980 PF01820 D-ala D-ala ligase N-terminus BG01_4980 PF07478 D-ala D-ala ligase C-terminus BG01_4981 PF07478 D-ala D-ala ligase C-terminus BG01_4981 PF01820 D-ala D-ala ligase N-terminus BG01_4982 PF07690 Major Facilitator Superfamily BG01_4984 PF01557 Fumarylacetoacetate (FAA) hydrolase family BG01_4985 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG01_4989 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BG01_4989 PF00005 ABC transporter BG01_4991 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BG01_4991 PF00005 ABC transporter BG01_4993 PF00528 Binding-protein-dependent transport system inner membrane component BG01_4994 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG01_4997 PF16326 ABC transporter C-terminal domain BG01_4997 PF00005 ABC transporter BG01_4997 PF12848 ABC transporter BG01_5 PF03061 Thioesterase superfamily BG01_50 PF00772 DnaB-like helicase N terminal domain BG01_50 PF03796 DnaB-like helicase C terminal domain BG01_5001 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) BG01_5002 PF01026 TatD related DNase BG01_5005 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BG01_5005 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BG01_5007 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BG01_5007 PF00356 Bacterial regulatory proteins, lacI family BG01_5009 PF01553 Acyltransferase BG01_5011 PF14142 YrzO-like protein BG01_5012 PF00892 EamA-like transporter family BG01_5013 PF03466 LysR substrate binding domain BG01_5013 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG01_5016 PF12727 PBP superfamily domain BG01_5016 PF12728 Helix-turn-helix domain BG01_5019 PF00528 Binding-protein-dependent transport system inner membrane component BG01_502 PF00582 Universal stress protein family BG01_5020 PF06800 Sugar transport protein BG01_5021 PF04973 Nicotinamide mononucleotide transporter BG01_5022 PF14748 Pyrroline-5-carboxylate reductase dimerisation BG01_5022 PF03807 NADP oxidoreductase coenzyme F420-dependent BG01_5023 PF00248 Aldo/keto reductase family BG01_5024 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG01_5025 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG01_5028 PF12833 Helix-turn-helix domain BG01_5030 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG01_5031 PF00005 ABC transporter BG01_5031 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BG01_5032 PF00005 ABC transporter BG01_5032 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BG01_5033 PF00528 Binding-protein-dependent transport system inner membrane component BG01_5033 PF12911 N-terminal TM domain of oligopeptide transport permease C BG01_5034 PF00528 Binding-protein-dependent transport system inner membrane component BG01_5037 PF07690 Major Facilitator Superfamily BG01_5039 PF07690 Major Facilitator Superfamily BG01_504 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BG01_504 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BG01_5040 PF01565 FAD binding domain BG01_5043 PF03180 NLPA lipoprotein BG01_5044 PF00005 ABC transporter BG01_5044 PF09383 NIL domain BG01_5045 PF00528 Binding-protein-dependent transport system inner membrane component BG01_5054 PF00326 Prolyl oligopeptidase family BG01_5054 PF07676 WD40-like Beta Propeller Repeat BG01_5055 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BG01_5055 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BG01_5056 PF02447 GntP family permease BG01_5057 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BG01_5057 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BG01_5058 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BG01_5058 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BG01_5059 PF00392 Bacterial regulatory proteins, gntR family BG01_5059 PF07729 FCD domain BG01_506 PF01381 Helix-turn-helix BG01_5060 PF00561 alpha/beta hydrolase fold BG01_5061 PF01380 SIS domain BG01_5062 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BG01_5062 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BG01_5062 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BG01_5062 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BG01_5063 PF07949 YbbR-like protein BG01_5064 PF02457 DisA bacterial checkpoint controller nucleotide-binding BG01_5065 PF00491 Arginase family BG01_5066 PF02595 Glycerate kinase family BG01_5067 PF02595 Glycerate kinase family BG01_508 PF07883 Cupin domain BG01_5081 PF02308 MgtC family BG01_5082 PF08868 YugN-like family BG01_5083 PF02254 TrkA-N domain BG01_5083 PF07885 Ion channel BG01_5084 PF00342 Phosphoglucose isomerase BG01_5085 PF04070 Domain of unknown function (DUF378) BG01_5086 PF00575 S1 RNA binding domain BG01_5087 PF00155 Aminotransferase class I and II BG01_5088 PF01037 Lrp/AsnC ligand binding domain BG01_5089 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BG01_5089 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BG01_509 PF12746 GNAT acetyltransferase BG01_5090 PF08386 TAP-like protein BG01_5090 PF00561 alpha/beta hydrolase fold BG01_5092 PF00155 Aminotransferase class I and II BG01_5095 PF08810 Kinase associated protein B BG01_5096 PF00929 Exonuclease BG01_5097 PF03600 Citrate transporter BG01_51 PF03948 Ribosomal protein L9, C-terminal domain BG01_51 PF01281 Ribosomal protein L9, N-terminal domain BG01_5100 PF03129 Anticodon binding domain BG01_5100 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BG01_5101 PF03061 Thioesterase superfamily BG01_5103 PF02632 BioY family BG01_5105 PF00483 Nucleotidyl transferase BG01_5106 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BG01_5106 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BG01_5106 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BG01_5106 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BG01_5107 PF02457 DisA bacterial checkpoint controller nucleotide-binding BG01_5107 PF10372 Bacterial membrane-spanning protein N-terminus BG01_5108 PF00883 Cytosol aminopeptidase family, catalytic domain BG01_5108 PF02789 Cytosol aminopeptidase family, N-terminal domain BG01_5109 PF06725 3D domain BG01_5111 PF13344 Haloacid dehalogenase-like hydrolase BG01_5111 PF00293 NUDIX domain BG01_5112 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG01_5113 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG01_5115 PF06445 GyrI-like small molecule binding domain BG01_5118 PF04463 Protein of unknown function (DUF523) BG01_5121 PF01521 Iron-sulphur cluster biosynthesis BG01_5122 PF01678 Diaminopimelate epimerase BG01_5123 PF07293 Protein of unknown function (DUF1450) BG01_5124 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG01_5125 PF09383 NIL domain BG01_5125 PF00005 ABC transporter BG01_5126 PF03649 Uncharacterised protein family (UPF0014) BG01_5127 PF08274 PhnA Zinc-Ribbon BG01_5127 PF03831 PhnA domain BG01_5135 PF07315 Protein of unknown function (DUF1462) BG01_5136 PF01106 NifU-like domain BG01_5139 PF04608 Phosphatidylglycerophosphatase A BG01_5141 PF02525 Flavodoxin-like fold BG01_5142 PF13344 Haloacid dehalogenase-like hydrolase BG01_5144 PF01934 Protein of unknown function DUF86 BG01_5145 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded BG01_5148 PF06265 Protein of unknown function (DUF1027) BG01_5149 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) BG01_515 PF11518 Protein of unknown function (DUF3221) BG01_5150 PF13411 MerR HTH family regulatory protein BG01_5150 PF07739 TipAS antibiotic-recognition domain BG01_5151 PF10086 YhfC intramembrane metalloprotease BG01_5155 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family BG01_5155 PF04055 Radical SAM superfamily BG01_5156 PF01551 Peptidase family M23 BG01_5158 PF08827 Domain of unknown function (DUF1805) BG01_5159 PF02872 5'-nucleotidase, C-terminal domain BG01_516 PF00557 Metallopeptidase family M24 BG01_516 PF01321 Creatinase/Prolidase N-terminal domain BG01_5160 PF03551 Transcriptional regulator PadR-like family BG01_5161 PF04892 VanZ like family BG01_5162 PF01458 Uncharacterized protein family (UPF0051) BG01_5163 PF01592 NifU-like N terminal domain BG01_5164 PF00266 Aminotransferase class-V BG01_5165 PF01458 Uncharacterized protein family (UPF0051) BG01_5166 PF00005 ABC transporter BG01_5167 PF03180 NLPA lipoprotein BG01_5168 PF03180 NLPA lipoprotein BG01_5169 PF00528 Binding-protein-dependent transport system inner membrane component BG01_5170 PF00005 ABC transporter BG01_5170 PF09383 NIL domain BG01_5172 PF00085 Thioredoxin BG01_5173 PF01751 Toprim domain BG01_5174 PF01597 Glycine cleavage H-protein BG01_5175 PF03960 ArsC family BG01_5184 PF00056 lactate/malate dehydrogenase, NAD binding domain BG01_5184 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BG01_5189 PF00440 Bacterial regulatory proteins, tetR family BG01_5189 PF13305 Tetracyclin repressor-like, C-terminal domain BG01_519 PF00571 CBS domain BG01_519 PF07085 DRTGG domain BG01_519 PF00392 Bacterial regulatory proteins, gntR family BG01_519 PF03061 Thioesterase superfamily BG01_5190 PF00753 Metallo-beta-lactamase superfamily BG01_5191 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BG01_5191 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BG01_5191 PF02770 Acyl-CoA dehydrogenase, middle domain BG01_5192 PF00108 Thiolase, N-terminal domain BG01_5192 PF02803 Thiolase, C-terminal domain BG01_5193 PF00378 Enoyl-CoA hydratase/isomerase BG01_5193 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BG01_5193 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BG01_5194 PF14115 YuzL-like protein BG01_5195 PF07943 Penicillin-binding protein 5, C-terminal domain BG01_5195 PF00768 D-alanyl-D-alanine carboxypeptidase BG01_5196 PF01619 Proline dehydrogenase BG01_5197 PF10835 Protein of unknown function (DUF2573) BG01_5198 PF01910 Thiamine-binding protein BG01_5199 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG01_5199 PF00672 HAMP domain BG01_5199 PF02743 Cache domain BG01_52 PF02272 DHHA1 domain BG01_52 PF01368 DHH family BG01_5203 PF07690 Major Facilitator Superfamily BG01_5204 PF13520 Amino acid permease BG01_5206 PF02096 60Kd inner membrane protein BG01_5208 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BG01_5208 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BG01_5215 PF09335 SNARE associated Golgi protein BG01_5217 PF03734 L,D-transpeptidase catalytic domain BG01_5217 PF17969 L,D-transpeptidase C-terminal domain BG01_5218 PF00072 Response regulator receiver domain BG01_5218 PF00486 Transcriptional regulatory protein, C terminal BG01_5219 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_5219 PF00512 His Kinase A (phospho-acceptor) domain BG01_5219 PF00989 PAS fold BG01_5219 PF16736 Single Cache-like BG01_522 PF14007 YtpI-like protein BG01_5221 PF08264 Anticodon-binding domain of tRNA BG01_5221 PF09334 tRNA synthetases class I (M) BG01_5223 PF02743 Cache domain BG01_5223 PF00672 HAMP domain BG01_5223 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG01_5224 PF01883 Iron-sulfur cluster assembly protein BG01_5225 PF02868 Thermolysin metallopeptidase, alpha-helical domain BG01_5225 PF01447 Thermolysin metallopeptidase, catalytic domain BG01_5225 PF07504 Fungalysin/Thermolysin Propeptide Motif BG01_5225 PF03413 Peptidase propeptide and YPEB domain BG01_5226 PF02678 Pirin BG01_5226 PF17954 Quercetinase C-terminal cupin domain BG01_5227 PF01047 MarR family BG01_5229 PF00999 Sodium/hydrogen exchanger family BG01_523 PF02272 DHHA1 domain BG01_523 PF01368 DHH family BG01_5230 PF02080 TrkA-C domain BG01_5231 PF01235 Sodium:alanine symporter family BG01_5232 PF00210 Ferritin-like domain BG01_5235 PF03641 Possible lysine decarboxylase BG01_5237 PF00210 Ferritin-like domain BG01_5238 PF04235 Protein of unknown function (DUF418) BG01_5240 PF07662 Na+ dependent nucleoside transporter C-terminus BG01_5240 PF01773 Na+ dependent nucleoside transporter N-terminus BG01_5241 PF07662 Na+ dependent nucleoside transporter C-terminus BG01_5241 PF01773 Na+ dependent nucleoside transporter N-terminus BG01_5242 PF01235 Sodium:alanine symporter family BG01_5243 PF01235 Sodium:alanine symporter family BG01_5244 PF13460 NAD(P)H-binding BG01_5249 PF00248 Aldo/keto reductase family BG01_525 PF14034 Sporulation protein YtrH BG01_5250 PF07690 Major Facilitator Superfamily BG01_5251 PF01638 HxlR-like helix-turn-helix BG01_5252 PF07849 Protein of unknown function (DUF1641) BG01_5253 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG01_5254 PF01479 S4 domain BG01_5254 PF00579 tRNA synthetases class I (W and Y) BG01_5255 PF01565 FAD binding domain BG01_5255 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BG01_5257 PF17202 Single cache domain 3 BG01_5257 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG01_5257 PF00672 HAMP domain BG01_5259 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BG01_526 PF02811 PHP domain BG01_526 PF14579 Helix-hairpin-helix motif BG01_526 PF07733 Bacterial DNA polymerase III alpha NTPase domain BG01_526 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BG01_526 PF01336 OB-fold nucleic acid binding domain BG01_5260 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BG01_5263 PF13302 Acetyltransferase (GNAT) domain BG01_5264 PF06146 Phosphate-starvation-inducible E BG01_5267 PF00005 ABC transporter BG01_5268 PF01032 FecCD transport family BG01_5269 PF01032 FecCD transport family BG01_527 PF00390 Malic enzyme, N-terminal domain BG01_527 PF03949 Malic enzyme, NAD binding domain BG01_5271 PF00486 Transcriptional regulatory protein, C terminal BG01_5271 PF00072 Response regulator receiver domain BG01_5272 PF01668 SmpB protein BG01_5273 PF00773 RNB domain BG01_5273 PF17876 Cold shock domain BG01_5273 PF00575 S1 RNA binding domain BG01_5273 PF08206 Ribonuclease B OB domain BG01_5274 PF12146 Serine aminopeptidase, S33 BG01_5275 PF03840 Preprotein translocase SecG subunit BG01_5276 PF04172 LrgB-like family BG01_5277 PF03788 LrgA family BG01_5278 PF01156 Inosine-uridine preferring nucleoside hydrolase BG01_528 PF00392 Bacterial regulatory proteins, gntR family BG01_529 PF17848 Acetyl-coA carboxylase zinc finger domain BG01_529 PF01039 Carboxyl transferase domain BG01_5295 PF04860 Phage portal protein BG01_53 PF09991 Predicted membrane protein (DUF2232) BG01_530 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BG01_5300 PF02899 Phage integrase, N-terminal SAM-like domain BG01_5300 PF00589 Phage integrase family BG01_5301 PF03952 Enolase, N-terminal domain BG01_5301 PF00113 Enolase, C-terminal TIM barrel domain BG01_5302 PF06415 BPG-independent PGAM N-terminus (iPGM_N) BG01_5302 PF01676 Metalloenzyme superfamily BG01_5303 PF00121 Triosephosphate isomerase BG01_5304 PF00162 Phosphoglycerate kinase BG01_5305 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BG01_5305 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BG01_5306 PF04198 Putative sugar-binding domain BG01_5308 PF00309 Sigma-54 factor, Activator interacting domain (AID) BG01_5308 PF04963 Sigma-54 factor, core binding domain BG01_5308 PF04552 Sigma-54, DNA binding domain BG01_531 PF00365 Phosphofructokinase BG01_5312 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BG01_5313 PF07451 Stage V sporulation protein AD (SpoVAD) BG01_5314 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BG01_5316 PF04239 Protein of unknown function (DUF421) BG01_5317 PF00574 Clp protease BG01_5318 PF00381 PTS HPr component phosphorylation site BG01_5319 PF10298 WhiA N-terminal LAGLIDADG-like domain BG01_5319 PF14527 WhiA LAGLIDADG-like domain BG01_5319 PF02650 WhiA C-terminal HTH domain BG01_532 PF00391 PEP-utilising enzyme, mobile domain BG01_532 PF00224 Pyruvate kinase, barrel domain BG01_532 PF02887 Pyruvate kinase, alpha/beta domain BG01_5320 PF01933 Uncharacterised protein family UPF0052 BG01_5321 PF03668 P-loop ATPase protein family BG01_5322 PF00293 NUDIX domain BG01_5324 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG01_5326 PF14602 Hexapeptide repeat of succinyl-transferase BG01_5327 PF13419 Haloacid dehalogenase-like hydrolase BG01_5328 PF01790 Prolipoprotein diacylglyceryl transferase BG01_5329 PF07475 HPr Serine kinase C-terminal domain BG01_5329 PF02603 HPr Serine kinase N terminus BG01_533 PF04186 FxsA cytoplasmic membrane protein BG01_5330 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV BG01_5332 PF17755 UvrA DNA-binding domain BG01_5332 PF00005 ABC transporter BG01_5332 PF17760 UvrA interaction domain BG01_5333 PF00271 Helicase conserved C-terminal domain BG01_5333 PF02151 UvrB/uvrC motif BG01_5333 PF17757 UvrB interaction domain BG01_5333 PF12344 Ultra-violet resistance protein B BG01_5333 PF04851 Type III restriction enzyme, res subunit BG01_5334 PF07282 Putative transposase DNA-binding domain BG01_5334 PF01385 Probable transposase BG01_5334 PF12323 Helix-turn-helix domain BG01_5337 PF13411 MerR HTH family regulatory protein BG01_5337 PF07739 TipAS antibiotic-recognition domain BG01_534 PF01594 AI-2E family transporter BG01_5341 PF03601 Conserved hypothetical protein 698 BG01_5342 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG01_5342 PF03466 LysR substrate binding domain BG01_5343 PF13411 MerR HTH family regulatory protein BG01_5344 PF03358 NADPH-dependent FMN reductase BG01_5346 PF01906 Putative heavy-metal-binding BG01_5347 PF00005 ABC transporter BG01_5347 PF00664 ABC transporter transmembrane region BG01_5348 PF17820 PDZ domain BG01_5349 PF01471 Putative peptidoglycan binding domain BG01_5349 PF03572 Peptidase family S41 BG01_5349 PF17820 PDZ domain BG01_535 PF04284 Protein of unknown function (DUF441) BG01_5350 PF18075 FtsX extracellular domain BG01_5350 PF02687 FtsX-like permease family BG01_5351 PF00005 ABC transporter BG01_5352 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BG01_5353 PF03462 PCRF domain BG01_5353 PF00472 RF-1 domain BG01_5354 PF02810 SEC-C motif BG01_5354 PF07517 SecA DEAD-like domain BG01_5354 PF01043 SecA preprotein cross-linking domain BG01_5354 PF07516 SecA Wing and Scaffold domain BG01_5355 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BG01_5355 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus BG01_5356 PF00313 'Cold-shock' DNA-binding domain BG01_5358 PF04851 Type III restriction enzyme, res subunit BG01_5358 PF00271 Helicase conserved C-terminal domain BG01_5359 PF01476 LysM domain BG01_5359 PF00877 NlpC/P60 family BG01_536 PF00285 Citrate synthase, C-terminal domain BG01_5360 PF01638 HxlR-like helix-turn-helix BG01_5361 PF02645 Uncharacterised protein, DegV family COG1307 BG01_5362 PF01205 Uncharacterized protein family UPF0029 BG01_5362 PF09186 Domain of unknown function (DUF1949) BG01_5363 PF03816 Cell envelope-related transcriptional attenuator domain BG01_5364 PF02350 UDP-N-acetylglucosamine 2-epimerase BG01_5365 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BG01_5365 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BG01_5365 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BG01_5366 PF00953 Glycosyl transferase family 4 BG01_5368 PF00874 PRD domain BG01_5368 PF03610 PTS system fructose IIA component BG01_5368 PF00158 Sigma-54 interaction domain BG01_537 PF00180 Isocitrate/isopropylmalate dehydrogenase BG01_5370 PF02417 Chromate transporter BG01_5371 PF04794 YdjC-like protein BG01_5372 PF02056 Family 4 glycosyl hydrolase BG01_5372 PF11975 Family 4 glycosyl hydrolase C-terminal domain BG01_5373 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BG01_5374 PF02378 Phosphotransferase system, EIIC BG01_5375 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BG01_5377 PF02675 S-adenosylmethionine decarboxylase BG01_5378 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BG01_5379 PF02378 Phosphotransferase system, EIIC BG01_538 PF00056 lactate/malate dehydrogenase, NAD binding domain BG01_538 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BG01_5380 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BG01_5381 PF00375 Sodium:dicarboxylate symporter family BG01_5383 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG01_5385 PF03466 LysR substrate binding domain BG01_5385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG01_5389 PF01654 Cytochrome bd terminal oxidase subunit I BG01_5390 PF02322 Cytochrome bd terminal oxidase subunit II BG01_5391 PF02040 Arsenical pump membrane protein BG01_5392 PF01964 Radical SAM ThiC family BG01_5392 PF13667 ThiC-associated domain BG01_5393 PF02652 L-lactate permease BG01_5395 PF09988 Uncharacterized metal-binding protein (DUF2227) BG01_5397 PF00884 Sulfatase BG01_5398 PF01063 Amino-transferase class IV BG01_54 PF01084 Ribosomal protein S18 BG01_5400 PF00877 NlpC/P60 family BG01_5400 PF01476 LysM domain BG01_5401 PF01773 Na+ dependent nucleoside transporter N-terminus BG01_5401 PF07662 Na+ dependent nucleoside transporter C-terminus BG01_5406 PF02028 BCCT, betaine/carnitine/choline family transporter BG01_5407 PF01476 LysM domain BG01_5407 PF06725 3D domain BG01_541 PF00072 Response regulator receiver domain BG01_541 PF00486 Transcriptional regulatory protein, C terminal BG01_5412 PF04434 SWIM zinc finger BG01_5413 PF12419 SNF2 Helicase protein BG01_5413 PF00271 Helicase conserved C-terminal domain BG01_5413 PF00176 SNF2 family N-terminal domain BG01_5419 PF04545 Sigma-70, region 4 BG01_5419 PF04542 Sigma-70 region 2 BG01_542 PF16736 Single Cache-like BG01_542 PF00989 PAS fold BG01_542 PF00512 His Kinase A (phospho-acceptor) domain BG01_542 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_5420 PF04893 Yip1 domain BG01_5421 PF12704 MacB-like periplasmic core domain BG01_5421 PF02687 FtsX-like permease family BG01_5422 PF00005 ABC transporter BG01_5426 PF07690 Major Facilitator Superfamily BG01_5429 PF00512 His Kinase A (phospho-acceptor) domain BG01_5429 PF16736 Single Cache-like BG01_5429 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_5429 PF00989 PAS fold BG01_543 PF01367 5'-3' exonuclease, C-terminal SAM fold BG01_543 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BG01_543 PF00476 DNA polymerase family A BG01_5430 PF00072 Response regulator receiver domain BG01_5430 PF00486 Transcriptional regulatory protein, C terminal BG01_5431 PF16363 GDP-mannose 4,6 dehydratase BG01_5432 PF03816 Cell envelope-related transcriptional attenuator domain BG01_5433 PF07977 FabA-like domain BG01_5434 PF02350 UDP-N-acetylglucosamine 2-epimerase BG01_5435 PF08239 Bacterial SH3 domain BG01_5435 PF00005 ABC transporter BG01_5436 PF01061 ABC-2 type transporter BG01_5437 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BG01_5437 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BG01_5437 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BG01_544 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BG01_544 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BG01_544 PF06827 Zinc finger found in FPG and IleRS BG01_5446 PF12116 Stage III sporulation protein D BG01_5448 PF01551 Peptidase family M23 BG01_545 PF02659 Putative manganese efflux pump BG01_5450 PF00005 ABC transporter BG01_5451 PF04397 LytTr DNA-binding domain BG01_5451 PF00072 Response regulator receiver domain BG01_5452 PF00005 ABC transporter BG01_5453 PF08486 Stage II sporulation protein BG01_5454 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BG01_5456 PF06612 Protein of unknown function (DUF1146) BG01_5457 PF00361 Proton-conducting membrane transporter BG01_5458 PF00361 Proton-conducting membrane transporter BG01_5459 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus BG01_5459 PF00361 Proton-conducting membrane transporter BG01_5459 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BG01_546 PF01121 Dephospho-CoA kinase BG01_5460 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BG01_5461 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 BG01_5463 PF00146 NADH dehydrogenase BG01_5464 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BG01_5465 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BG01_5466 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BG01_5467 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 BG01_5468 PF00990 Diguanylate cyclase, GGDEF domain BG01_5468 PF00563 EAL domain BG01_5468 PF03707 Bacterial signalling protein N terminal repeat BG01_547 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BG01_547 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BG01_5471 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BG01_5471 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain BG01_5472 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BG01_5472 PF02874 ATP synthase alpha/beta family, beta-barrel domain BG01_5473 PF00231 ATP synthase BG01_5474 PF00306 ATP synthase alpha/beta chain, C terminal domain BG01_5474 PF02874 ATP synthase alpha/beta family, beta-barrel domain BG01_5474 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BG01_5475 PF00213 ATP synthase delta (OSCP) subunit BG01_5476 PF00430 ATP synthase B/B' CF(0) BG01_5477 PF00137 ATP synthase subunit C BG01_5478 PF00119 ATP synthase A chain BG01_5479 PF03899 ATP synthase I chain BG01_548 PF02675 S-adenosylmethionine decarboxylase BG01_5482 PF00464 Serine hydroxymethyltransferase BG01_5483 PF04260 Protein of unknown function (DUF436) BG01_5484 PF02502 Ribose/Galactose Isomerase BG01_5485 PF01451 Low molecular weight phosphotyrosine protein phosphatase BG01_5486 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BG01_5487 PF07681 DoxX BG01_5488 PF01613 Flavin reductase like domain BG01_549 PF03477 ATP cone domain BG01_5490 PF02659 Putative manganese efflux pump BG01_5491 PF01300 Telomere recombination BG01_5491 PF03481 Putative GTP-binding controlling metal-binding BG01_5493 PF09551 Stage II sporulation protein R (spore_II_R) BG01_5494 PF13847 Methyltransferase domain BG01_5494 PF17827 PrmC N-terminal domain BG01_5495 PF00472 RF-1 domain BG01_5495 PF03462 PCRF domain BG01_5496 PF00265 Thymidine kinase BG01_5497 PF01197 Ribosomal protein L31 BG01_5498 PF07497 Rho termination factor, RNA-binding domain BG01_5498 PF07498 Rho termination factor, N-terminal domain BG01_5498 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BG01_5499 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded BG01_55 PF00436 Single-strand binding protein family BG01_550 PF07261 Replication initiation and membrane attachment BG01_5500 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BG01_5501 PF01116 Fructose-bisphosphate aldolase class-II BG01_5502 PF00072 Response regulator receiver domain BG01_5503 PF10740 Domain of unknown function (DUF2529) BG01_5504 PF00117 Glutamine amidotransferase class-I BG01_5504 PF06418 CTP synthase N-terminus BG01_5505 PF05066 HB1, ASXL, restriction endonuclease HTH domain BG01_5507 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BG01_5507 PF02770 Acyl-CoA dehydrogenase, middle domain BG01_5507 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BG01_5508 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BG01_5508 PF02770 Acyl-CoA dehydrogenase, middle domain BG01_5508 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BG01_5509 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BG01_5509 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BG01_551 PF01695 IstB-like ATP binding protein BG01_551 PF07319 Primosomal protein DnaI N-terminus BG01_5510 PF02803 Thiolase, C-terminal domain BG01_5510 PF00108 Thiolase, N-terminal domain BG01_5511 PF02754 Cysteine-rich domain BG01_5511 PF13183 4Fe-4S dicluster domain BG01_5512 PF13091 PLD-like domain BG01_5513 PF03851 UV-endonuclease UvdE BG01_5514 PF03707 Bacterial signalling protein N terminal repeat BG01_5514 PF00990 Diguanylate cyclase, GGDEF domain BG01_5514 PF00563 EAL domain BG01_5518 PF00072 Response regulator receiver domain BG01_5518 PF00196 Bacterial regulatory proteins, luxR family BG01_5519 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_5519 PF07730 Histidine kinase BG01_552 PF08812 YtxC-like family BG01_5522 PF00005 ABC transporter BG01_5523 PF00557 Metallopeptidase family M24 BG01_5526 PF02324 Glycosyl hydrolase family 70 BG01_5526 PF01473 Putative cell wall binding repeat BG01_5527 PF04389 Peptidase family M28 BG01_5527 PF02225 PA domain BG01_553 PF03129 Anticodon binding domain BG01_553 PF02824 TGS domain BG01_553 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BG01_553 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BG01_5531 PF04542 Sigma-70 region 2 BG01_5531 PF08281 Sigma-70, region 4 BG01_5532 PF00750 tRNA synthetases class I (R) BG01_5532 PF03485 Arginyl tRNA synthetase N terminal domain BG01_5532 PF05746 DALR anticodon binding domain BG01_5533 PF09148 Domain of unknown function (DUF1934) BG01_5534 PF02016 LD-carboxypeptidase N-terminal domain BG01_5534 PF17676 LD-carboxypeptidase C-terminal domain BG01_5537 PF00491 Arginase family BG01_5538 PF17284 Spermidine synthase tetramerisation domain BG01_5539 PF07690 Major Facilitator Superfamily BG01_554 PF05198 Translation initiation factor IF-3, N-terminal domain BG01_554 PF00707 Translation initiation factor IF-3, C-terminal domain BG01_5540 PF13411 MerR HTH family regulatory protein BG01_5541 PF03009 Glycerophosphoryl diester phosphodiesterase family BG01_5542 PF00905 Penicillin binding protein transpeptidase domain BG01_5542 PF00912 Transglycosylase BG01_5543 PF08741 YwhD family BG01_5544 PF02163 Peptidase family M50 BG01_5545 PF01361 Tautomerase enzyme BG01_5546 PF01966 HD domain BG01_5547 PF01497 Periplasmic binding protein BG01_5548 PF00005 ABC transporter BG01_5549 PF01032 FecCD transport family BG01_555 PF01632 Ribosomal protein L35 BG01_5550 PF01032 FecCD transport family BG01_5551 PF01032 FecCD transport family BG01_5552 PF07293 Protein of unknown function (DUF1450) BG01_5555 PF03099 Biotin/lipoate A/B protein ligase family BG01_5556 PF01515 Phosphate acetyl/butaryl transferase BG01_5558 PF00768 D-alanyl-D-alanine carboxypeptidase BG01_5558 PF07943 Penicillin-binding protein 5, C-terminal domain BG01_5559 PF07486 Cell Wall Hydrolase BG01_556 PF00453 Ribosomal protein L20 BG01_5560 PF09671 Spore coat protein (Spore_GerQ) BG01_5561 PF04241 Protein of unknown function (DUF423) BG01_5563 PF02254 TrkA-N domain BG01_5563 PF07885 Ion channel BG01_5564 PF00860 Permease family BG01_5566 PF12823 Domain of unknown function (DUF3817) BG01_5567 PF03167 Uracil DNA glycosylase superfamily BG01_5568 PF12679 ABC-2 family transporter protein BG01_5569 PF00005 ABC transporter BG01_5570 PF13472 GDSL-like Lipase/Acylhydrolase family BG01_5571 PF00356 Bacterial regulatory proteins, lacI family BG01_5571 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BG01_5573 PF03447 Homoserine dehydrogenase, NAD binding domain BG01_5573 PF00742 Homoserine dehydrogenase BG01_5573 PF01842 ACT domain BG01_5574 PF04204 Homoserine O-succinyltransferase BG01_5575 PF01053 Cys/Met metabolism PLP-dependent enzyme BG01_5577 PF13419 Haloacid dehalogenase-like hydrolase BG01_5578 PF00027 Cyclic nucleotide-binding domain BG01_5579 PF02525 Flavodoxin-like fold BG01_558 PF05343 M42 glutamyl aminopeptidase BG01_5580 PF00196 Bacterial regulatory proteins, luxR family BG01_5580 PF00072 Response regulator receiver domain BG01_5581 PF07730 Histidine kinase BG01_5581 PF13185 GAF domain BG01_5582 PF07730 Histidine kinase BG01_5582 PF13185 GAF domain BG01_5583 PF08543 Phosphomethylpyrimidine kinase BG01_5584 PF00990 Diguanylate cyclase, GGDEF domain BG01_5584 PF07694 5TMR of 5TMR-LYT BG01_5585 PF04328 Selenoprotein, putative BG01_5586 PF13722 5TM C-terminal transporter carbon starvation CstA BG01_5586 PF02554 Carbon starvation protein CstA BG01_5587 PF04397 LytTr DNA-binding domain BG01_5587 PF00072 Response regulator receiver domain BG01_5588 PF07690 Major Facilitator Superfamily BG01_5589 PF03808 Glycosyl transferase WecB/TagA/CpsF family BG01_559 PF16859 Tetracyclin repressor-like, C-terminal domain BG01_559 PF00440 Bacterial regulatory proteins, tetR family BG01_5596 PF10087 Uncharacterized protein conserved in bacteria (DUF2325) BG01_5599 PF04235 Protein of unknown function (DUF418) BG01_56 PF01250 Ribosomal protein S6 BG01_5605 PF00395 S-layer homology domain BG01_5606 PF01569 PAP2 superfamily BG01_5609 PF00535 Glycosyl transferase family 2 BG01_561 PF07690 Major Facilitator Superfamily BG01_5610 PF00483 Nucleotidyl transferase BG01_5611 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BG01_5611 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BG01_5611 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BG01_5614 PF13276 HTH-like domain BG01_5614 PF13333 Integrase core domain BG01_5614 PF00665 Integrase core domain BG01_5621 PF03497 Anthrax toxin LF subunit BG01_5621 PF07737 Anthrax toxin lethal factor, N- and C-terminal domain BG01_5622 PF00156 Phosphoribosyl transferase domain BG01_5627 PF05043 Mga helix-turn-helix domain BG01_5627 PF00874 PRD domain BG01_5627 PF08279 HTH domain BG01_5628 PF09385 Histidine kinase N terminal BG01_5632 PF01526 Tn3 transposase DDE domain BG01_5632 PF13700 Domain of unknown function (DUF4158) BG01_5633 PF02796 Helix-turn-helix domain of resolvase BG01_5633 PF00239 Resolvase, N terminal domain BG01_5634 PF03845 Spore germination protein BG01_5635 PF03323 Bacillus/Clostridium GerA spore germination protein BG01_5636 PF05504 Spore germination B3/ GerAC like, C-terminal BG01_5638 PF17475 Clostridial binary toxin B/anthrax toxin PA domain 2 BG01_5638 PF03495 Clostridial binary toxin B/anthrax toxin PA Ca-binding domain BG01_5638 PF17476 Clostridial binary toxin B/anthrax toxin PA domain 3 BG01_5638 PF07691 PA14 domain BG01_5639 PF01022 Bacterial regulatory protein, arsR family BG01_5643 PF07737 Anthrax toxin lethal factor, N- and C-terminal domain BG01_5643 PF09156 Anthrax toxin lethal factor, middle domain BG01_5648 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BG01_5648 PF18277 AbrB C-terminal domain BG01_5651 PF00589 Phage integrase family BG01_5651 PF02899 Phage integrase, N-terminal SAM-like domain BG01_5658 PF04740 LXG domain of WXG superfamily BG01_5658 PF14436 Bacterial EndoU nuclease BG01_566 PF01966 HD domain BG01_5665 PF13276 HTH-like domain BG01_5665 PF00665 Integrase core domain BG01_5665 PF13333 Integrase core domain BG01_5666 PF13276 HTH-like domain BG01_5666 PF00665 Integrase core domain BG01_5666 PF13333 Integrase core domain BG01_5667 PF01609 Transposase DDE domain BG01_5668 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment BG01_567 PF14098 Small, acid-soluble spore protein I BG01_5670 PF00589 Phage integrase family BG01_5675 PF18801 response regulator aspartate phosphatase H, N terminal BG01_5677 PF17209 Hfq protein BG01_5678 PF01022 Bacterial regulatory protein, arsR family BG01_5679 PF02600 Disulfide bond formation protein DsbB BG01_5682 PF00565 Staphylococcal nuclease homologue BG01_5684 PF13342 C-terminal repeat of topoisomerase BG01_5684 PF01751 Toprim domain BG01_5684 PF01131 DNA topoisomerase BG01_5690 PF08378 Nuclease-related domain BG01_5698 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) BG01_57 PF01926 50S ribosome-binding GTPase BG01_57 PF06071 Protein of unknown function (DUF933) BG01_570 PF01409 tRNA synthetases class II core domain (F) BG01_570 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BG01_571 PF03483 B3/4 domain BG01_571 PF03484 tRNA synthetase B5 domain BG01_571 PF03147 Ferredoxin-fold anticodon binding domain BG01_571 PF01588 Putative tRNA binding domain BG01_571 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BG01_5719 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) BG01_572 PF01336 OB-fold nucleic acid binding domain BG01_572 PF00152 tRNA synthetases class II (D, K and N) BG01_5733 PF01609 Transposase DDE domain BG01_5738 PF01609 Transposase DDE domain BG01_5739 PF01609 Transposase DDE domain BG01_5744 PF13491 4TM region of DNA translocase FtsK/SpoIIIE BG01_5744 PF01580 FtsK/SpoIIIE family BG01_5744 PF09397 Ftsk gamma domain BG01_5744 PF17854 FtsK alpha domain BG01_576 PF11858 Domain of unknown function (DUF3378) BG01_576 PF01351 Ribonuclease HII BG01_5764 PF00437 Type II/IV secretion system protein BG01_577 PF05164 Cell division protein ZapA BG01_578 PF02674 Colicin V production protein BG01_5786 PF08708 Primase C terminal 1 (PriCT-1) BG01_579 PF02811 PHP domain BG01_579 PF14791 DNA polymerase beta thumb BG01_579 PF14716 Helix-hairpin-helix domain BG01_5791 PF17362 Family of unknown function BG01_5794 PF17631 Family of unknown function (DUF5512) BG01_58 PF06107 Bacterial protein of unknown function (DUF951) BG01_580 PF00488 MutS domain V BG01_580 PF01713 Smr domain BG01_5803 PF00437 Type II/IV secretion system protein BG01_5809 PF04956 TrbC/VIRB2 family BG01_5813 PF12696 TraM recognition site of TraD and TraG BG01_582 PF00849 RNA pseudouridylate synthase BG01_582 PF01479 S4 domain BG01_5820 PF00877 NlpC/P60 family BG01_5822 PF17632 Family of unknown function (DUF5513) BG01_5828 PF17633 Family of unknown function (DUF5514) BG01_5829 PF17630 Family of unknown function (DUF5511) BG01_583 PF05525 Branched-chain amino acid transport protein BG01_5830 PF18840 Large polyvalent protein associated domain 25 BG01_5833 PF13154 Protein of unknown function (DUF3991) BG01_5834 PF01131 DNA topoisomerase BG01_5834 PF01751 Toprim domain BG01_5835 PF01131 DNA topoisomerase BG01_5835 PF01751 Toprim domain BG01_584 PF05031 Iron Transport-associated domain BG01_5841 PF17443 Uncharacterized protein pXO2-72 BG01_5845 PF00817 impB/mucB/samB family BG01_5845 PF11798 IMS family HHH motif BG01_5845 PF11799 impB/mucB/samB family C-terminal domain BG01_5846 PF13152 Protein of unknown function (DUF3967) BG01_5846 PF13411 MerR HTH family regulatory protein BG01_5849 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG01_5853 PF00874 PRD domain BG01_5853 PF05043 Mga helix-turn-helix domain BG01_5853 PF08280 M protein trans-acting positive regulator (MGA) HTH domain BG01_5855 PF01810 LysE type translocator BG01_5858 PF08279 HTH domain BG01_5858 PF00874 PRD domain BG01_5858 PF05043 Mga helix-turn-helix domain BG01_5859 PF05043 Mga helix-turn-helix domain BG01_5859 PF00874 PRD domain BG01_5859 PF08279 HTH domain BG01_586 PF05031 Iron Transport-associated domain BG01_5860 PF09385 Histidine kinase N terminal BG01_5863 PF10502 Signal peptidase, peptidase S26 BG01_5865 PF01609 Transposase DDE domain BG01_5866 PF01022 Bacterial regulatory protein, arsR family BG01_5868 PF08245 Mur ligase middle domain BG01_5869 PF14102 Capsule biosynthesis CapC BG01_587 PF01497 Periplasmic binding protein BG01_5870 PF09587 Bacterial capsule synthesis protein PGA_cap BG01_5874 PF05043 Mga helix-turn-helix domain BG01_5874 PF08280 M protein trans-acting positive regulator (MGA) HTH domain BG01_5876 PF01569 PAP2 superfamily BG01_5878 PF01569 PAP2 superfamily BG01_5879 PF01609 Transposase DDE domain BG01_588 PF01032 FecCD transport family BG01_5880 PF01609 Transposase DDE domain BG01_5881 PF00440 Bacterial regulatory proteins, tetR family BG01_5882 PF04463 Protein of unknown function (DUF523) BG01_5883 PF02517 CPBP intramembrane metalloprotease BG01_5885 PF01906 Putative heavy-metal-binding BG01_5889 PF13276 HTH-like domain BG01_5889 PF00665 Integrase core domain BG01_5889 PF13333 Integrase core domain BG01_589 PF00005 ABC transporter BG01_5891 PF01520 N-acetylmuramoyl-L-alanine amidase BG01_5891 PF00395 S-layer homology domain BG01_5894 PF13614 AAA domain BG01_59 PF00924 Mechanosensitive ion channel BG01_590 PF04203 Sortase domain BG01_591 PF03992 Antibiotic biosynthesis monooxygenase BG01_593 PF17785 PUA-like domain BG01_593 PF10672 S-adenosylmethionine-dependent methyltransferase BG01_594 PF09962 Uncharacterized conserved protein (DUF2196) BG01_596 PF00072 Response regulator receiver domain BG01_596 PF00486 Transcriptional regulatory protein, C terminal BG01_597 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_597 PF00512 His Kinase A (phospho-acceptor) domain BG01_598 PF00005 ABC transporter BG01_60 PF06866 Protein of unknown function (DUF1256) BG01_604 PF05163 DinB family BG01_605 PF01032 FecCD transport family BG01_606 PF01497 Periplasmic binding protein BG01_608 PF13193 AMP-binding enzyme C-terminal domain BG01_608 PF00501 AMP-binding enzyme BG01_609 PF00440 Bacterial regulatory proteins, tetR family BG01_609 PF08359 YsiA-like protein, C-terminal region BG01_61 PF17762 HTH domain found in ParB protein BG01_61 PF02195 ParB-like nuclease domain BG01_610 PF00378 Enoyl-CoA hydratase/isomerase BG01_611 PF01012 Electron transfer flavoprotein domain BG01_612 PF00766 Electron transfer flavoprotein FAD-binding domain BG01_612 PF01012 Electron transfer flavoprotein domain BG01_613 PF00085 Thioredoxin BG01_614 PF01541 GIY-YIG catalytic domain BG01_614 PF08459 UvrC Helix-hairpin-helix N-terminal BG01_614 PF02151 UvrB/uvrC motif BG01_615 PF10702 Protein of unknown function (DUF2507) BG01_616 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BG01_617 PF00890 FAD binding domain BG01_617 PF02910 Fumarate reductase flavoprotein C-term BG01_618 PF13085 2Fe-2S iron-sulfur cluster binding domain BG01_618 PF13183 4Fe-4S dicluster domain BG01_619 PF03061 Thioesterase superfamily BG01_62 PF13614 AAA domain BG01_620 PF02557 D-alanyl-D-alanine carboxypeptidase BG01_621 PF01618 MotA/TolQ/ExbB proton channel family BG01_622 PF00691 OmpA family BG01_622 PF13677 Membrane MotB of proton-channel complex MotA/MotB BG01_623 PF13677 Membrane MotB of proton-channel complex MotA/MotB BG01_623 PF00691 OmpA family BG01_624 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) BG01_625 PF13732 Domain of unknown function (DUF4162) BG01_625 PF00005 ABC transporter BG01_627 PF02082 Transcriptional regulator BG01_628 PF00230 Major intrinsic protein BG01_629 PF13536 Putative multidrug resistance efflux transporter BG01_63 PF17762 HTH domain found in ParB protein BG01_63 PF02195 ParB-like nuclease domain BG01_630 PF07883 Cupin domain BG01_630 PF01381 Helix-turn-helix BG01_631 PF04024 PspC domain BG01_634 PF04397 LytTr DNA-binding domain BG01_634 PF00072 Response regulator receiver domain BG01_635 PF06580 Histidine kinase BG01_635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_635 PF07694 5TMR of 5TMR-LYT BG01_636 PF00005 ABC transporter BG01_636 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BG01_637 PF00005 ABC transporter BG01_637 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BG01_638 PF00528 Binding-protein-dependent transport system inner membrane component BG01_64 PF02527 rRNA small subunit methyltransferase G BG01_640 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG01_641 PF07969 Amidohydrolase family BG01_642 PF07969 Amidohydrolase family BG01_644 PF00860 Permease family BG01_645 PF00196 Bacterial regulatory proteins, luxR family BG01_648 PF00440 Bacterial regulatory proteins, tetR family BG01_65 PF01134 Glucose inhibited division protein A BG01_65 PF13932 GidA associated domain BG01_650 PF07690 Major Facilitator Superfamily BG01_651 PF01177 Asp/Glu/Hydantoin racemase BG01_652 PF10646 Sporulation and spore germination BG01_653 PF03725 3' exoribonuclease family, domain 2 BG01_653 PF01138 3' exoribonuclease family, domain 1 BG01_654 PF01725 Ham1 family BG01_655 PF12850 Calcineurin-like phosphoesterase superfamily domain BG01_659 PF08000 Bacterial PH domain BG01_659 PF11724 YvbH-like oligomerisation region BG01_66 PF10396 GTP-binding protein TrmE N-terminus BG01_66 PF01926 50S ribosome-binding GTPase BG01_66 PF12631 MnmE helical domain BG01_663 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BG01_663 PF05697 Bacterial trigger factor protein (TF) BG01_663 PF05698 Bacterial trigger factor protein (TF) C-terminus BG01_664 PF07724 AAA domain (Cdc48 subfamily) BG01_664 PF10431 C-terminal, D2-small domain, of ClpB protein BG01_664 PF06689 ClpX C4-type zinc finger BG01_665 PF05362 Lon protease (S16) C-terminal proteolytic domain BG01_665 PF00004 ATPase family associated with various cellular activities (AAA) BG01_666 PF02190 ATP-dependent protease La (LON) substrate-binding domain BG01_666 PF05362 Lon protease (S16) C-terminal proteolytic domain BG01_666 PF00004 ATPase family associated with various cellular activities (AAA) BG01_667 PF01926 50S ribosome-binding GTPase BG01_668 PF02566 OsmC-like protein BG01_669 PF01047 MarR family BG01_67 PF01424 R3H domain BG01_67 PF14804 Jag N-terminus BG01_670 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BG01_670 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BG01_670 PF01488 Shikimate / quinate 5-dehydrogenase BG01_671 PF01578 Cytochrome C assembly protein BG01_672 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BG01_672 PF03900 Porphobilinogen deaminase, C-terminal domain BG01_673 PF02602 Uroporphyrinogen-III synthase HemD BG01_674 PF00490 Delta-aminolevulinic acid dehydratase BG01_675 PF00202 Aminotransferase class-III BG01_676 PF01476 LysM domain BG01_678 PF08264 Anticodon-binding domain of tRNA BG01_678 PF00133 tRNA synthetases class I (I, L, M and V) BG01_678 PF10458 Valyl tRNA synthetase tRNA binding arm BG01_679 PF02875 Mur ligase family, glutamate ligase domain BG01_679 PF08245 Mur ligase middle domain BG01_68 PF02096 60Kd inner membrane protein BG01_681 PF02545 Maf-like protein BG01_682 PF04002 RadC-like JAB domain BG01_684 PF04085 rod shape-determining protein MreC BG01_686 PF03775 Septum formation inhibitor MinC, C-terminal domain BG01_687 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BG01_688 PF01551 Peptidase family M23 BG01_689 PF02163 Peptidase family M50 BG01_69 PF00825 Ribonuclease P BG01_690 PF00575 S1 RNA binding domain BG01_690 PF10150 Ribonuclease E/G family BG01_691 PF00829 Ribosomal prokaryotic L21 protein BG01_692 PF04327 Cysteine protease Prp BG01_693 PF01016 Ribosomal L27 protein BG01_694 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BG01_694 PF14682 Sporulation initiation phospho-transferase B, C-terminal BG01_695 PF01926 50S ribosome-binding GTPase BG01_695 PF09269 Domain of unknown function (DUF1967) BG01_695 PF01018 GTP1/OBG BG01_696 PF00072 Response regulator receiver domain BG01_696 PF00486 Transcriptional regulatory protein, C terminal BG01_698 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_699 PF00005 ABC transporter BG01_7 PF00535 Glycosyl transferase family 2 BG01_70 PF00468 Ribosomal protein L34 BG01_700 PF02687 FtsX-like permease family BG01_701 PF02687 FtsX-like permease family BG01_702 PF00800 Prephenate dehydratase BG01_702 PF01842 ACT domain BG01_703 PF03473 MOSC domain BG01_703 PF03475 3-alpha domain BG01_704 PF08279 HTH domain BG01_704 PF02829 3H domain BG01_705 PF00266 Aminotransferase class-V BG01_706 PF02910 Fumarate reductase flavoprotein C-term BG01_706 PF00890 FAD binding domain BG01_707 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BG01_707 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BG01_708 PF02445 Quinolinate synthetase A protein BG01_709 PF01476 LysM domain BG01_71 PF08299 Bacterial dnaA protein helix-turn-helix BG01_71 PF11638 DnaA N-terminal domain BG01_71 PF00308 Bacterial dnaA protein BG01_712 PF01022 Bacterial regulatory protein, arsR family BG01_713 PF00892 EamA-like transporter family BG01_714 PF00892 EamA-like transporter family BG01_716 PF01497 Periplasmic binding protein BG01_717 PF01330 RuvA N terminal domain BG01_717 PF07499 RuvA, C-terminal domain BG01_718 PF17864 RuvB AAA lid domain BG01_718 PF05496 Holliday junction DNA helicase RuvB P-loop domain BG01_718 PF05491 RuvB C-terminal winged helix domain BG01_719 PF11146 Protein of unknown function (DUF2905) BG01_72 PF02768 DNA polymerase III beta subunit, C-terminal domain BG01_72 PF02767 DNA polymerase III beta subunit, central domain BG01_72 PF00712 DNA polymerase III beta subunit, N-terminal domain BG01_720 PF02547 Queuosine biosynthesis protein BG01_721 PF01702 Queuine tRNA-ribosyltransferase BG01_722 PF02699 Preprotein translocase subunit BG01_724 PF04239 Protein of unknown function (DUF421) BG01_725 PF01943 Polysaccharide biosynthesis protein BG01_725 PF14667 Polysaccharide biosynthesis C-terminal domain BG01_726 PF13797 Post-transcriptional regulator BG01_727 PF07549 SecD/SecF GG Motif BG01_727 PF02355 Protein export membrane protein BG01_728 PF01545 Cation efflux family BG01_728 PF16916 Dimerisation domain of Zinc Transporter BG01_729 PF10141 Single-strand DNA-specific exonuclease, C terminal domain BG01_729 PF17768 RecJ OB domain BG01_729 PF02272 DHHA1 domain BG01_729 PF01368 DHH family BG01_730 PF00156 Phosphoribosyl transferase domain BG01_731 PF13291 ACT domain BG01_731 PF02824 TGS domain BG01_731 PF04607 Region found in RelA / SpoT proteins BG01_732 PF02580 D-Tyr-tRNA(Tyr) deacylase BG01_734 PF13393 Histidyl-tRNA synthetase BG01_734 PF03129 Anticodon binding domain BG01_735 PF00152 tRNA synthetases class II (D, K and N) BG01_735 PF01336 OB-fold nucleic acid binding domain BG01_735 PF02938 GAD domain BG01_736 PF00899 ThiF family BG01_738 PF05496 Holliday junction DNA helicase RuvB P-loop domain BG01_738 PF12002 MgsA AAA+ ATPase C terminal BG01_738 PF16193 AAA C-terminal domain BG01_739 PF02082 Transcriptional regulator BG01_74 PF02463 RecF/RecN/SMC N terminal domain BG01_740 PF00266 Aminotransferase class-V BG01_743 PF13538 UvrD-like helicase C-terminal domain BG01_743 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain BG01_743 PF14490 Helix-hairpin-helix containing domain BG01_747 PF01594 AI-2E family transporter BG01_749 PF02272 DHHA1 domain BG01_749 PF01411 tRNA synthetases class II (A) BG01_749 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BG01_75 PF01751 Toprim domain BG01_75 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG01_75 PF00986 DNA gyrase B subunit, carboxyl terminus BG01_75 PF00204 DNA gyrase B BG01_750 PF06135 IreB regulatory phosphoprotein BG01_751 PF03652 Holliday junction resolvase BG01_752 PF06949 Protein of unknown function (DUF1292) BG01_753 PF02618 YceG-like family BG01_757 PF00485 Phosphoribulokinase / Uridine kinase family BG01_758 PF03449 Transcription elongation factor, N-terminal BG01_758 PF01272 Transcription elongation factor, GreA/GreB, C-term BG01_759 PF00905 Penicillin binding protein transpeptidase domain BG01_759 PF03717 Penicillin-binding Protein dimerisation domain BG01_76 PF00521 DNA gyrase/topoisomerase IV, subunit A BG01_76 PF03989 DNA gyrase C-terminal domain, beta-propeller BG01_762 PF08241 Methyltransferase domain BG01_763 PF01048 Phosphorylase superfamily BG01_764 PF00291 Pyridoxal-phosphate dependent enzyme BG01_765 PF01053 Cys/Met metabolism PLP-dependent enzyme BG01_766 PF00171 Aldehyde dehydrogenase family BG01_766 PF00465 Iron-containing alcohol dehydrogenase BG01_767 PF14143 YrhC-like protein BG01_768 PF01497 Periplasmic binding protein BG01_769 PF01032 FecCD transport family BG01_770 PF00005 ABC transporter BG01_776 PF07681 DoxX BG01_777 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG01_778 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG01_780 PF00351 Biopterin-dependent aromatic amino acid hydroxylase BG01_781 PF05922 Peptidase inhibitor I9 BG01_781 PF13860 FlgD Ig-like domain BG01_781 PF02225 PA domain BG01_781 PF00082 Subtilase family BG01_788 PF00561 alpha/beta hydrolase fold BG01_788 PF08386 TAP-like protein BG01_790 PF00245 Alkaline phosphatase BG01_792 PF04607 Region found in RelA / SpoT proteins BG01_793 PF00881 Nitroreductase family BG01_794 PF00471 Ribosomal protein L33 BG01_795 PF16244 Domain of unknown function (DUF4901) BG01_798 PF04545 Sigma-70, region 4 BG01_798 PF04542 Sigma-70 region 2 BG01_799 PF02666 Phosphatidylserine decarboxylase BG01_8 PF12848 ABC transporter BG01_8 PF00005 ABC transporter BG01_801 PF01926 50S ribosome-binding GTPase BG01_802 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BG01_802 PF08501 Shikimate dehydrogenase substrate binding domain BG01_802 PF01488 Shikimate / quinate 5-dehydrogenase BG01_803 PF01985 CRS1 / YhbY (CRM) domain BG01_804 PF01467 Cytidylyltransferase-like BG01_805 PF01966 HD domain BG01_807 PF13649 Methyltransferase domain BG01_808 PF14748 Pyrroline-5-carboxylate reductase dimerisation BG01_808 PF03807 NADP oxidoreductase coenzyme F420-dependent BG01_809 PF10531 SLBB domain BG01_81 PF14175 YaaC-like Protein BG01_810 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BG01_813 PF14141 YqzM-like protein BG01_814 PF06144 DNA polymerase III, delta subunit BG01_815 PF01649 Ribosomal protein S20 BG01_816 PF03418 Germination protease BG01_818 PF00009 Elongation factor Tu GTP binding domain BG01_818 PF03144 Elongation factor Tu domain 2 BG01_818 PF00679 Elongation factor G C-terminus BG01_818 PF06421 GTP-binding protein LepA C-terminus BG01_819 PF01638 HxlR-like helix-turn-helix BG01_82 PF00478 IMP dehydrogenase / GMP reductase domain BG01_82 PF00571 CBS domain BG01_820 PF04055 Radical SAM superfamily BG01_820 PF06969 HemN C-terminal domain BG01_821 PF01628 HrcA protein C terminal domain BG01_822 PF01025 GrpE BG01_823 PF00012 Hsp70 protein BG01_824 PF00226 DnaJ domain BG01_824 PF01556 DnaJ C terminal domain BG01_824 PF00684 DnaJ central domain BG01_826 PF04452 RNA methyltransferase BG01_827 PF00919 Uncharacterized protein family UPF0004 BG01_827 PF01938 TRAM domain BG01_827 PF04055 Radical SAM superfamily BG01_828 PF01165 Ribosomal protein S21 BG01_829 PF09424 Yqey-like protein BG01_83 PF00768 D-alanyl-D-alanine carboxypeptidase BG01_83 PF07943 Penicillin-binding protein 5, C-terminal domain BG01_830 PF07873 YabP family BG01_831 PF06898 Putative stage IV sporulation protein YqfD BG01_832 PF02562 PhoH-like protein BG01_833 PF01966 HD domain BG01_833 PF07698 7TM receptor with intracellular HD hydrolase BG01_833 PF07697 7TM-HD extracellular BG01_834 PF02130 Uncharacterized protein family UPF0054 BG01_835 PF01219 Prokaryotic diacylglycerol kinase BG01_836 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BG01_837 PF07650 KH domain BG01_837 PF01926 50S ribosome-binding GTPase BG01_839 PF02565 Recombination protein O C terminal BG01_839 PF11967 Recombination protein O N terminal BG01_84 PF01680 SOR/SNZ family BG01_840 PF08279 HTH domain BG01_840 PF00571 CBS domain BG01_841 PF03618 Kinase/pyrophosphorylase BG01_842 PF10410 DnaB-helicase binding domain of primase BG01_842 PF08275 DNA primase catalytic core, N-terminal domain BG01_842 PF01807 CHC2 zinc finger BG01_843 PF04542 Sigma-70 region 2 BG01_843 PF04545 Sigma-70, region 4 BG01_843 PF03979 Sigma-70 factor, region 1.1 BG01_843 PF00140 Sigma-70 factor, region 1.2 BG01_843 PF04539 Sigma-70 region 3 BG01_844 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BG01_845 PF04816 tRNA (adenine(22)-N(1))-methyltransferase BG01_846 PF01784 NIF3 (NGG1p interacting factor 3) BG01_847 PF02401 LytB protein BG01_849 PF00271 Helicase conserved C-terminal domain BG01_849 PF00270 DEAD/DEAH box helicase BG01_85 PF01174 SNO glutamine amidotransferase family BG01_850 PF01261 Xylose isomerase-like TIM barrel BG01_851 PF11116 Protein of unknown function (DUF2624) BG01_852 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BG01_852 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BG01_853 PF00005 ABC transporter BG01_854 PF00950 ABC 3 transport family BG01_855 PF01475 Ferric uptake regulator family BG01_856 PF04551 GcpE protein BG01_86 PF02403 Seryl-tRNA synthetase N-terminal domain BG01_86 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BG01_860 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BG01_860 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BG01_861 PF07690 Major Facilitator Superfamily BG01_863 PF12849 PBP superfamily domain BG01_864 PF00528 Binding-protein-dependent transport system inner membrane component BG01_865 PF00528 Binding-protein-dependent transport system inner membrane component BG01_866 PF00005 ABC transporter BG01_867 PF01895 PhoU domain BG01_868 PF00483 Nucleotidyl transferase BG01_869 PF00471 Ribosomal protein L33 BG01_870 PF01812 5-formyltetrahydrofolate cyclo-ligase family BG01_871 PF06014 Bacterial protein of unknown function (DUF910) BG01_872 PF00480 ROK family BG01_873 PF10958 Protein of unknown function (DUF2759) BG01_874 PF00753 Metallo-beta-lactamase superfamily BG01_876 PF01022 Bacterial regulatory protein, arsR family BG01_878 PF01053 Cys/Met metabolism PLP-dependent enzyme BG01_879 PF01053 Cys/Met metabolism PLP-dependent enzyme BG01_880 PF02219 Methylenetetrahydrofolate reductase BG01_880 PF02574 Homocysteine S-methyltransferase BG01_881 PF02574 Homocysteine S-methyltransferase BG01_881 PF00809 Pterin binding enzyme BG01_881 PF02965 Vitamin B12 dependent methionine synthase, activation domain BG01_881 PF02607 B12 binding domain BG01_881 PF02310 B12 binding domain BG01_882 PF03033 Glycosyltransferase family 28 N-terminal domain BG01_882 PF04101 Glycosyltransferase family 28 C-terminal domain BG01_889 PF00375 Sodium:dicarboxylate symporter family BG01_89 PF01712 Deoxynucleoside kinase BG01_890 PF11117 Protein of unknown function (DUF2626) BG01_892 PF00437 Type II/IV secretion system protein BG01_893 PF00482 Type II secretion system (T2SS), protein F BG01_895 PF07963 Prokaryotic N-terminal methylation motif BG01_90 PF01712 Deoxynucleoside kinase BG01_900 PF01202 Shikimate kinase BG01_901 PF14038 YqzE-like protein BG01_905 PF11079 Bacterial protein YqhG of unknown function BG01_906 PF00271 Helicase conserved C-terminal domain BG01_906 PF00176 SNF2 family N-terminal domain BG01_907 PF08669 Glycine cleavage T-protein C-terminal barrel domain BG01_907 PF01571 Aminomethyltransferase folate-binding domain BG01_908 PF02347 Glycine cleavage system P-protein BG01_909 PF02347 Glycine cleavage system P-protein BG01_91 PF00857 Isochorismatase family BG01_912 PF00392 Bacterial regulatory proteins, gntR family BG01_913 PF00005 ABC transporter BG01_92 PF14437 MafB19-like deaminase BG01_920 PF00893 Small Multidrug Resistance protein BG01_921 PF00893 Small Multidrug Resistance protein BG01_923 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BG01_923 PF00356 Bacterial regulatory proteins, lacI family BG01_924 PF00581 Rhodanese-like domain BG01_925 PF03099 Biotin/lipoate A/B protein ligase family BG01_928 PF01325 Iron dependent repressor, N-terminal DNA binding domain BG01_928 PF02742 Iron dependent repressor, metal binding and dimerisation domain BG01_93 PF12169 DNA polymerase III subunits gamma and tau domain III BG01_930 PF13419 Haloacid dehalogenase-like hydrolase BG01_931 PF07136 Protein of unknown function (DUF1385) BG01_932 PF11085 Conserved membrane protein YqhR BG01_933 PF01220 Dehydroquinase class II BG01_934 PF01321 Creatinase/Prolidase N-terminal domain BG01_934 PF00557 Metallopeptidase family M24 BG01_935 PF08207 Elongation factor P (EF-P) KOW-like domain BG01_935 PF01132 Elongation factor P (EF-P) OB domain BG01_935 PF09285 Elongation factor P, C-terminal BG01_94 PF02575 YbaB/EbfC DNA-binding family BG01_940 PF09548 Stage III sporulation protein AB (spore_III_AB) BG01_941 PF06686 Stage III sporulation protein AC/AD protein family BG01_942 PF06686 Stage III sporulation protein AC/AD protein family BG01_943 PF09546 Stage III sporulation protein AE (spore_III_AE) BG01_944 PF09581 Stage III sporulation protein AF (Spore_III_AF) BG01_946 PF12685 SpoIIIAH-like protein BG01_948 PF00364 Biotin-requiring enzyme BG01_949 PF02785 Biotin carboxylase C-terminal domain BG01_949 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BG01_949 PF00289 Biotin carboxylase, N-terminal domain BG01_95 PF02132 RecR protein BG01_95 PF13662 Toprim domain BG01_950 PF03780 Asp23 family, cell envelope-related function BG01_951 PF01029 NusB family BG01_952 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BG01_952 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BG01_953 PF13742 OB-fold nucleic acid binding domain BG01_953 PF02601 Exonuclease VII, large subunit BG01_954 PF02609 Exonuclease VII small subunit BG01_955 PF00348 Polyprenyl synthetase BG01_956 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BG01_956 PF02779 Transketolase, pyrimidine binding domain BG01_956 PF02780 Transketolase, C-terminal domain BG01_957 PF01728 FtsJ-like methyltransferase BG01_957 PF01479 S4 domain BG01_958 PF02863 Arginine repressor, C-terminal domain BG01_958 PF01316 Arginine repressor, DNA binding domain BG01_959 PF13476 AAA domain BG01_96 PF10704 Protein of unknown function (DUF2508) BG01_960 PF17820 PDZ domain BG01_960 PF05580 SpoIVB peptidase S55 BG01_961 PF08769 Sporulation initiation factor Spo0A C terminal BG01_961 PF00072 Response regulator receiver domain BG01_963 PF14174 YycC-like protein BG01_964 PF03009 Glycerophosphoryl diester phosphodiesterase family BG01_966 PF00158 Sigma-54 interaction domain BG01_966 PF02954 Bacterial regulatory protein, Fis family BG01_966 PF00989 PAS fold BG01_967 PF01515 Phosphate acetyl/butaryl transferase BG01_968 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BG01_968 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BG01_969 PF00871 Acetokinase family BG01_97 PF07441 SigmaK-factor processing regulatory protein BofA BG01_970 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BG01_970 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG01_971 PF00676 Dehydrogenase E1 component BG01_972 PF02780 Transketolase, C-terminal domain BG01_972 PF02779 Transketolase, pyrimidine binding domain BG01_973 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BG01_973 PF00364 Biotin-requiring enzyme BG01_973 PF02817 e3 binding domain BG01_974 PF01098 Cell cycle protein BG01_975 PF09297 NADH pyrophosphatase zinc ribbon domain BG01_975 PF00293 NUDIX domain BG01_976 PF11208 Protein of unknown function (DUF2992) BG01_977 PF06491 Disulphide isomerase BG01_978 PF00497 Bacterial extracellular solute-binding proteins, family 3 BG01_979 PF00528 Binding-protein-dependent transport system inner membrane component BG01_980 PF00005 ABC transporter BG01_981 PF06081 Aromatic acid exporter family member 1 BG01_981 PF11728 Putative aromatic acid exporter C-terminal domain BG01_982 PF03734 L,D-transpeptidase catalytic domain BG01_984 PF13302 Acetyltransferase (GNAT) domain BG01_985 PF07687 Peptidase dimerisation domain BG01_985 PF01546 Peptidase family M20/M25/M40 BG01_987 PF00817 impB/mucB/samB family BG01_987 PF11798 IMS family HHH motif BG01_987 PF11799 impB/mucB/samB family C-terminal domain BG01_989 PF12706 Beta-lactamase superfamily domain BG01_989 PF00753 Metallo-beta-lactamase superfamily BG01_990 PF01842 ACT domain BG01_990 PF03315 Serine dehydratase beta chain BG01_991 PF03313 Serine dehydratase alpha chain BG01_992 PF14748 Pyrroline-5-carboxylate reductase dimerisation BG01_992 PF03807 NADP oxidoreductase coenzyme F420-dependent BG01_994 PF00753 Metallo-beta-lactamase superfamily BG01_995 PF00106 short chain dehydrogenase BG01_997 PF02774 Semialdehyde dehydrogenase, dimerisation domain BG01_997 PF01118 Semialdehyde dehydrogenase, NAD binding domain BG01_998 PF01960 ArgJ family BG01_999 PF00696 Amino acid kinase family